Citrus Sinensis ID: 024315

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
Protein Sequence
MEKVVAVAVGATRPAICSPSLAEVDFRTSVKMSGFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEVGVHVWYRFELAETWRITKWLF
Secondary Structure (PSIPRED)
ccEEEEEEEcccccccccccccHHHHcccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccEEEEcccccHHHHHHHcccccEEEEEEccccccHHHHHHHHHHHHHHccccEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHcccccEEEEEEcccHHHHHHcccHHHHHHHHcccccccccccccccccccccEEEEcccccHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEccEEEEEccccHHHHHHHHccccccccccccccccccHHccccccEEEEEccccccEcEEEEccccccccccccccccccHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHHHHccccEEEEcHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHcccccEEEEEEEccHHHHHccccccHHHHHHcccccccEcccEcccccccccEEEEcccccHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MEKVVAVAVgatrpaicspslaevdfrtsvkmsgffnvsrlrslqPIKALEESATASVVQESaaisgnnlcqnstvakstnilwhknsvdkRDRQQLLQQKGCVIwitglsgsgksTLACALSQALHwrgkltyildgdncrhglnrdlsfkaeDRVENIRRIGEVAKLFADAGVICIACLispyrkdrdacrsmlpegdfievfmdvplqvceardpkglYKLAREGkvkgftgiddpyepplncevgvHVWYRFELAETWRITKWLF
Flexible Loop (DISEMBL)
MEKVVAVAvgatrpaicspslaevDFRTSVKMSGFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRdlsfkaedrVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGftgiddpyepplnCEVGVHVWYRFELAETWRITKWLF
Low Complexity Region (SEG)
MEKVVAVAVGATRPAICSPSLAEVDFRTSVKMSGFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEVGVHVWYRFELAETWRITKWLF
Disordered region (IsUnstruct)
****VAVAVGATRPAICSPSLAEVDFRTSVKMSGFFNVSRLRSLQPIKA**************AISGNNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEVGVHVWYRFELAETWRITKWL*
Disordered Region (DISOPRED)
**KVVAVAVGATRPAICSPSLAEVDFRTSVKMSGFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHKNSVDKR**Q**LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEVGVHVWYRFELAETWRITKWLF
Disordered Region (DISEMBL)
MEKVVAVAVGATRPAICSPSLAEVDFRTSVKMSGFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEVGVHVWYRFELAETWRITKWLF
Disordered Region (DISPRO)
**KVVAVAVGATRPAICSPSLAEVDFRTSVKMSGFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEVGVHVWYRFELAETWRITKWLF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEKVVAVAVGATRPAICSPSLAEVDFRTSVKMSGFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEVGVHVWYRFELAETWRITKWLF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	269	2.2.26 [Sep-21-2011]
O49204	312	Adenylyl-sulfate kinase,	N/A	no	0.903	0.778	0.600	7e-88
Q43295	276	Adenylyl-sulfate kinase 1	yes	no	0.650	0.634	0.84	6e-87
O49196	293	Adenylyl-sulfate kinase 2	no	no	0.903	0.829	0.625	4e-86
Q97MT8	200	Adenylyl-sulfate kinase O	yes	no	0.650	0.875	0.573	2e-59
O06735	199	Probable adenylyl-sulfate	yes	no	0.639	0.864	0.563	3e-57
A5N960	199	Adenylyl-sulfate kinase O	yes	no	0.643	0.869	0.586	8e-57
A1U3X8	199	Adenylyl-sulfate kinase O	yes	no	0.628	0.849	0.597	1e-56
Q88X60	207	Adenylyl-sulfate kinase O	yes	no	0.650	0.845	0.582	3e-56
Q8EQN3	199	Adenylyl-sulfate kinase O	yes	no	0.643	0.869	0.583	1e-55
Q8ZBP3	213	Adenylyl-sulfate kinase O	yes	no	0.654	0.826	0.568	2e-55

>sp|O49204|KAPS_CATRO Adenylyl-sulfate kinase, chloroplastic OS=Catharanthus roseus GN=AKN PE=2 SV=1

 Score =  323 bits (828), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 170/283 (60%), Positives = 193/283 (68%), Gaps = 40/283 (14%)

Query: 9   VGATRPAICSPSLAEVDF---------RTSVKMSGFFNV-------SRLRSLQPIKALEE 52
           +G+ +  + S  L E DF          +SVK+   F          +L  L PIKA E 
Sbjct: 2   IGSVKRPVVSCVLPEFDFTESTGLGKKSSSVKLPVNFGAFGSGGGEVKLGFLAPIKATEG 61

Query: 53  SATASV------------------------VQESAAISGNNLCQNSTVAKSTNILWHKNS 88
           S T+S                         +       G  + Q +TV  STNILWHK +
Sbjct: 62  SKTSSFQVNGKVDNFRHLQPSDCNSNSDSSLNNCNGFPGKKILQTTTVGNSTNILWHKCA 121

Query: 89  VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD 148
           V+K +RQ+ LQQ+GCVIWITGLSGSGKSTLACALS+ LH +GKLTYILDGDN RHGLN D
Sbjct: 122 VEKSERQEPLQQRGCVIWITGLSGSGKSTLACALSRGLHAKGKLTYILDGDNVRHGLNSD 181

Query: 149 LSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDV 208
           LSFKAEDR ENIRRIGEVAKLFADAGVICIA LISPYRK  DACRS+LPEGDFIEVFMDV
Sbjct: 182 LSFKAEDRAENIRRIGEVAKLFADAGVICIASLISPYRKPPDACRSLLPEGDFIEVFMDV 241

Query: 209 PLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEVGVH 251
           PL+VCEARDPKGLYKLAR GK+KGFTGIDDPYEPPL  E+ +H
Sbjct: 242 PLKVCEARDPKGLYKLARAGKIKGFTGIDDPYEPPLKSEIVLH 284

Catalyzes the synthesis of activated sulfate.
Catharanthus roseus (taxid: 4058)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 2EC: 5

>sp|Q43295|KAP1_ARATH Adenylyl-sulfate kinase 1, chloroplastic OS=Arabidopsis thaliana GN=AKN1 PE=1 SV=1

 Score =  320 bits (821), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 147/175 (84%), Positives = 160/175 (91%)

Query: 74  STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLT 133
           STV  STNI WH+ SV+K DRQ+LL QKGCVIW+TGLSGSGKSTLACAL+Q L+ +GKL 
Sbjct: 73  STVGNSTNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLC 132

Query: 134 YILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACR 193
           YILDGDN RHGLNRDLSFKAEDR ENIRR+GEVAKLFADAG+ICIA LISPYR DRDACR
Sbjct: 133 YILDGDNVRHGLNRDLSFKAEDRAENIRRVGEVAKLFADAGIICIASLISPYRTDRDACR 192

Query: 194 SMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEV 248
           S+LPEGDF+EVFMDVPL VCEARDPKGLYKLAR GK+KGFTGIDDPYEPPLNCE+
Sbjct: 193 SLLPEGDFVEVFMDVPLSVCEARDPKGLYKLARAGKIKGFTGIDDPYEPPLNCEI 247

Catalyzes the synthesis of activated sulfate.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|O49196|KAP2_ARATH Adenylyl-sulfate kinase 2, chloroplastic OS=Arabidopsis thaliana GN=AKN2 PE=2 SV=1

 Score =  318 bits (814), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 162/259 (62%), Positives = 191/259 (73%), Gaps = 16/259 (6%)

Query: 6   AVAVGATRPAI-CSPSLAEVDFRTSVKMSGFFN-------------VSRLRSLQPIKALE 51
            +A+ A+RP++ CS      D        GF               V+   S  PI A+ 
Sbjct: 3   GLAIRASRPSVFCSIPGLGGDSHRKPPSDGFLKLPASSIPADSRKLVANSTSFHPISAVN 62

Query: 52  ESATASVVQESAAISGNNLCQ--NSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITG 109
            SA AS+  +  A+S   L +  N+   K+ NI+WH++S+ + DRQQLLQQKGCV+WITG
Sbjct: 63  VSAQASLTADFPALSETILKEGRNNGKEKAENIVWHESSICRCDRQQLLQQKGCVVWITG 122

Query: 110 LSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKL 169
           LSGSGKST+ACALS+AL  RGKLTY LDGDN RHGLNRDL+FKAE R ENIRRIGEVAKL
Sbjct: 123 LSGSGKSTVACALSKALFERGKLTYTLDGDNVRHGLNRDLTFKAEHRTENIRRIGEVAKL 182

Query: 170 FADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGK 229
           FAD GVICIA LISPYR+DRDACRS+LP+GDF+EVFMDVPL VCE+RDPKGLYKLAR GK
Sbjct: 183 FADVGVICIASLISPYRRDRDACRSLLPDGDFVEVFMDVPLHVCESRDPKGLYKLARAGK 242

Query: 230 VKGFTGIDDPYEPPLNCEV 248
           +KGFTGIDDPYE P+NCEV
Sbjct: 243 IKGFTGIDDPYEAPVNCEV 261

Catalyzes the synthesis of activated sulfate.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|Q97MT8|CYSC_CLOAB Adenylyl-sulfate kinase OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=cysC PE=3 SV=1

 Score =  229 bits (583), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 101/176 (57%), Positives = 136/176 (77%), Gaps = 1/176 (0%)

Query: 78  KSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD 137
           KSTN++W +  + +++R+++L+QKG V+W TGLSGSGKST+A AL + L+  G LTY+LD
Sbjct: 5   KSTNVVWQETKIKRQNREKMLKQKGAVLWFTGLSGSGKSTVASALEKKLYEMGYLTYLLD 64

Query: 138 GDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLP 197
           GDN R+GLN DL FK+EDR ENIRR+ EVAKLFADAG+I I   ISP+ +DR+  R +L 
Sbjct: 65  GDNLRYGLNSDLGFKSEDRTENIRRVSEVAKLFADAGIITITTFISPFIEDRNNARKLLG 124

Query: 198 EGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEVGVHVW 253
           + DF+EV++D P++VCE RDPKG+YK AR G++K FTGID PYE P   E+ V  +
Sbjct: 125 K-DFVEVYIDCPIEVCEKRDPKGIYKKARNGEIKNFTGIDSPYEKPEKPEITVETY 179

Catalyzes the synthesis of activated sulfate.

Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) (taxid: 272562)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|O06735|CYSC2_BACSU Probable adenylyl-sulfate kinase OS=Bacillus subtilis (strain 168) GN=yisZ PE=3 SV=2

 Score =  222 bits (565), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 97/172 (56%), Positives = 128/172 (74%)

Query: 76  VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYI 135
           +  + NI+WH  ++ K DRQ L   K CV+W TGLSGSGKS LA A+ + L+ +G  +Y+
Sbjct: 1   MTHNPNIIWHPAAISKSDRQSLNGHKSCVLWFTGLSGSGKSVLANAVDEKLYRKGIQSYV 60

Query: 136 LDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSM 195
           LDGDN RHGLN+DL F+  DR+ENIRRIGEVAKLF D+G + +   ISP+R+DRD  R++
Sbjct: 61  LDGDNIRHGLNKDLGFQTGDRIENIRRIGEVAKLFVDSGQMILTAFISPFREDRDMVRAL 120

Query: 196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCE 247
            P+G+F E+++  PL VCE RDPKGLYK AR G++K FTGID PYE PL+ +
Sbjct: 121 FPKGEFFEIYVKCPLHVCEQRDPKGLYKKARNGEIKHFTGIDSPYEAPLSPD 172

Catalyzes the synthesis of activated sulfate.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|A5N960|CYSC_CLOK5 Adenylyl-sulfate kinase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=cysC PE=3 SV=1

 Score =  220 bits (561), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 102/174 (58%), Positives = 130/174 (74%), Gaps = 1/174 (0%)

Query: 77  AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL 136
            KSTNI WH+  VD+  R++LL Q G +IW TGLSGSGKST+A  L   L+  G+LTY+L
Sbjct: 3   VKSTNISWHRALVDREMREKLLGQNGILIWFTGLSGSGKSTIASELEMRLYNMGRLTYLL 62

Query: 137 DGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSML 196
           DGDN RHGLN +L F  EDR+ENIRR  EV KLF D+G+I I+  ISP++ DRD  R +L
Sbjct: 63  DGDNVRHGLNSNLGFTKEDRIENIRRTAEVCKLFVDSGIITISTFISPFKDDRDKVRKLL 122

Query: 197 PEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEVGV 250
            + DF+EV++D PL+VCE+RDPKG+YK AR G++K FTG+D PYE P N E+ V
Sbjct: 123 GK-DFVEVYVDCPLEVCESRDPKGIYKKARNGEIKDFTGVDSPYEVPDNPEIVV 175

Catalyzes the synthesis of activated sulfate.

Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) (taxid: 431943)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|A1U3X8|CYSC_MARAV Adenylyl-sulfate kinase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=cysC PE=3 SV=1

 Score =  219 bits (559), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 101/169 (59%), Positives = 125/169 (73%)

Query: 80  TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139
           +NI+WH + V + +R     QK C++W TGLSGSGKST+A AL  ALH RG  T++LDGD
Sbjct: 2   SNIVWHDHKVTRAERSANKNQKPCLLWFTGLSGSGKSTIANALDVALHERGYHTFLLDGD 61

Query: 140 NCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEG 199
           N RHGL  DL F  +DRVENIRR+GEV KLFADAG+I ++  ISP+  DR   R + P G
Sbjct: 62  NVRHGLCSDLGFSDDDRVENIRRVGEVCKLFADAGLIVMSAFISPFTSDRRMVRKLFPAG 121

Query: 200 DFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEV 248
           +FIEVFMD PL+ CE+RDPKGLYK AR G++K FTGID PYE P + E+
Sbjct: 122 EFIEVFMDAPLETCESRDPKGLYKKARAGEIKHFTGIDSPYEVPSHPEI 170

Catalyzes the synthesis of activated sulfate.

Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) (taxid: 351348)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|Q88X60|CYSC_LACPL Adenylyl-sulfate kinase OS=Lactobacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1) GN=cysC PE=3 SV=1

 Score =  218 bits (555), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 102/175 (58%), Positives = 126/175 (72%)

Query: 76  VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYI 135
           + KS NI WH++ V K +RQ L   K  V+W TGLSGSGKST+A A+ +AL  +   +Y+
Sbjct: 1   MVKSDNITWHQSQVSKAERQALNHHKSVVLWFTGLSGSGKSTIANAVEKALFDQQVGSYV 60

Query: 136 LDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSM 195
           LDGDN R GLN++L F AEDR ENIRRIGEVAKLF DAGVI +   ISPYR DRD  R+ 
Sbjct: 61  LDGDNMRFGLNKNLGFSAEDREENIRRIGEVAKLFVDAGVITLTAFISPYRADRDKVRAN 120

Query: 196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEVGV 250
           L   +FIEVF+D PL+VCE RD K LY  AR G++ GFTGID PYE P++ E+ +
Sbjct: 121 LEVDEFIEVFVDTPLEVCEQRDVKQLYAKARRGEITGFTGIDAPYEAPIDPEITI 175

Catalyzes the synthesis of activated sulfate.

Lactobacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1) (taxid: 220668)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|Q8EQN3|CYSC_OCEIH Adenylyl-sulfate kinase OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE831) GN=cysC PE=3 SV=1

 Score =  216 bits (551), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 101/173 (58%), Positives = 124/173 (71%)

Query: 76  VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYI 135
           + KSTNI+W K SV K DRQ L   K  V+W TGLSGSGKSTL+ AL + L      TY 
Sbjct: 1   MNKSTNIVWQKTSVKKADRQHLNNHKSAVLWFTGLSGSGKSTLSSALEKELFSLETHTYH 60

Query: 136 LDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSM 195
           LDGDN RHGLN++L F  EDR ENIRRIGEV+KL  DAG+I +   ISPY++DRD  R+ 
Sbjct: 61  LDGDNVRHGLNKNLGFSPEDREENIRRIGEVSKLMVDAGLITLTAFISPYQEDRDHVRAT 120

Query: 196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEV 248
           L + +FIE+++   L +CEARDPKGLYK AR G++  FTGID PYE PL+ E+
Sbjct: 121 LAQDEFIEIYVKCSLDMCEARDPKGLYKKARLGEINNFTGIDAPYEEPLHPEI 173

Catalyzes the synthesis of activated sulfate.

Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE831) (taxid: 221109)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|Q8ZBP3|CYSC_YERPE Adenylyl-sulfate kinase OS=Yersinia pestis GN=cysC PE=3 SV=1

 Score =  216 bits (549), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 100/176 (56%), Positives = 125/176 (71%)

Query: 73  NSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKL 132
             T +   NI+WH +++ ++DR+Q    +G V+W TGLSGSGKSTLA AL QAL  RG  
Sbjct: 11  QETRSDDENIVWHPHAITRQDREQQHGHQGVVLWFTGLSGSGKSTLAGALEQALFARGVS 70

Query: 133 TYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDAC 192
           TY+LDGDN RHGL RDL F   DR ENIRR+GEVAKL  DAG++ +   ISP+R +R   
Sbjct: 71  TYLLDGDNVRHGLCRDLGFSDADRRENIRRVGEVAKLMVDAGLVVLTAFISPHRAERKMV 130

Query: 193 RSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEV 248
           + ML  G FIEVF+D PL +CEARDPKGLYK AR G++K FTGID  YE P + ++
Sbjct: 131 QDMLASGQFIEVFVDTPLAICEARDPKGLYKKARAGELKNFTGIDSVYESPASPDI 186

Catalyzes the synthesis of activated sulfate.

Yersinia pestis (taxid: 632)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
255568599	281	adenylsulfate kinase, putative [Ricinus	0.743	0.711	0.745	5e-87
255583305	288	adenylsulfate kinase, putative [Ricinus	0.843	0.788	0.675	6e-87
296087318	684	unnamed protein product [Vitis vinifera]	0.739	0.290	0.733	8e-87
357476475	306	Adenylyl-sulfate kinase [Medicago trunca	0.825	0.725	0.685	3e-86
359807000	296	uncharacterized protein LOC100786331 [Gl	0.873	0.793	0.644	3e-86
7387809	312	RecName: Full=Adenylyl-sulfate kinase, c	0.903	0.778	0.600	4e-86
356511963	300	PREDICTED: adenylyl-sulfate kinase, chlo	0.881	0.79	0.631	2e-85
357482591	362	Adenylyl-sulfate kinase [Medicago trunca	0.728	0.541	0.76	2e-85
359480623	274	PREDICTED: adenylyl-sulfate kinase 1, ch	0.739	0.726	0.733	2e-85
15225999	276	Adenylyl-sulfate kinase 1 [Arabidopsis t	0.650	0.634	0.84	3e-85

>gi|255568599|ref|XP_002525273.1| adenylsulfate kinase, putative [Ricinus communis] gi|223535431|gb|EEF37101.1| adenylsulfate kinase, putative [Ricinus communis]

 Score =  326 bits (836), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 158/212 (74%), Positives = 181/212 (85%), Gaps = 12/212 (5%)

Query: 37  NVSRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHKNSVDKRDRQQ 96
           ++ RLRS   +KA++ESA +         SG +L     ++ + NI+WHK+ V+K +RQ+
Sbjct: 51  DLKRLRSSPLVKAMDESAIS---------SGKDL---QMMSCNGNIVWHKSPVEKCNRQE 98

Query: 97  LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR 156
           LLQQ+GCVIWITGLSGSGKSTLACALSQ LH +GKLTYILDGDN RHGLNRDL FKAEDR
Sbjct: 99  LLQQQGCVIWITGLSGSGKSTLACALSQGLHSKGKLTYILDGDNVRHGLNRDLGFKAEDR 158

Query: 157 VENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEAR 216
            ENIRR+GEVAKLFADAGVICIACLISPYRKDRDACR++LP+GDFIEVFMDVPLQVCE R
Sbjct: 159 AENIRRVGEVAKLFADAGVICIACLISPYRKDRDACRALLPDGDFIEVFMDVPLQVCETR 218

Query: 217 DPKGLYKLAREGKVKGFTGIDDPYEPPLNCEV 248
           DPKGLYKLAR GK+KGFTGIDDPYEPPLNCE+
Sbjct: 219 DPKGLYKLARAGKIKGFTGIDDPYEPPLNCEI 250

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583305|ref|XP_002532415.1| adenylsulfate kinase, putative [Ricinus communis] gi|223527864|gb|EEF29956.1| adenylsulfate kinase, putative [Ricinus communis]

 Score =  326 bits (836), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 158/234 (67%), Positives = 185/234 (79%), Gaps = 7/234 (2%)

Query: 20  SLAEVDFRTSVKMSGFFNVSRLRSLQP-IKALEESATASVVQESAAISGNNLCQNSTVAK 78
           ++A    + +VKM+       + +L P +  LE+ + A+   E +  S       S +  
Sbjct: 34  AIASGSQQQTVKMNVATTNGNVNTLIPNVPPLEKPSAANGQAEKSQSSL------SQIGN 87

Query: 79  STNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG 138
           STNI WH+ +VDK DRQ+LL+QKGCVIWITGLSGSGKST+ACALSQ L+ RGKLTYILDG
Sbjct: 88  STNIKWHECTVDKNDRQKLLKQKGCVIWITGLSGSGKSTVACALSQMLYQRGKLTYILDG 147

Query: 139 DNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPE 198
           DN RHGLN DLSFKAEDR ENIRR+GEV KLFADAGVICIACLISPYRKDRDACR +LP 
Sbjct: 148 DNLRHGLNNDLSFKAEDRAENIRRVGEVGKLFADAGVICIACLISPYRKDRDACRKILPN 207

Query: 199 GDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEVGVHV 252
           GDFIEVFMD+PLQVCE+RDPKGLYKLAR GK+KGFTGIDDPYEPPLNCE+ + +
Sbjct: 208 GDFIEVFMDIPLQVCESRDPKGLYKLARAGKIKGFTGIDDPYEPPLNCEISLKL 261

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087318|emb|CBI33692.3| unnamed protein product [Vitis vinifera]

 Score =  326 bits (835), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 154/210 (73%), Positives = 177/210 (84%), Gaps = 11/210 (5%)

Query: 39  SRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHKNSVDKRDRQQLL 98
           +R R + PIKA++    A V  ++    G N         STNI+WH+ SVDK +RQ+LL
Sbjct: 455 ARSRHVTPIKAVK----AFVSGQADGAGGKN-------GMSTNIVWHECSVDKLERQRLL 503

Query: 99  QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE 158
           QQKGCVIWITGLSGSGKSTLACALS+ALH+RG LTY+LDGDN RHGLNRDLSF+AEDR E
Sbjct: 504 QQKGCVIWITGLSGSGKSTLACALSRALHFRGNLTYVLDGDNVRHGLNRDLSFRAEDRAE 563

Query: 159 NIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDP 218
           NIRRIGEVAKLF+D+G+ICIA LISPYRKDRDACR+ML EG+FIEVFMD+PL+VCE RDP
Sbjct: 564 NIRRIGEVAKLFSDSGIICIASLISPYRKDRDACRAMLSEGNFIEVFMDIPLEVCEERDP 623

Query: 219 KGLYKLAREGKVKGFTGIDDPYEPPLNCEV 248
           KGLYKLAR GK++GFTGIDDPYEPPLNCEV
Sbjct: 624 KGLYKLARAGKIRGFTGIDDPYEPPLNCEV 653

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357476475|ref|XP_003608523.1| Adenylyl-sulfate kinase [Medicago truncatula] gi|355509578|gb|AES90720.1| Adenylyl-sulfate kinase [Medicago truncatula]

 Score =  324 bits (830), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 159/232 (68%), Positives = 184/232 (79%), Gaps = 10/232 (4%)

Query: 27  RTSVKMSGFFNVSRLR--SLQPIKALEESATASVVQESAAISGNNLCQN--------STV 76
           R+   ++ F++ +RL+  +L+PI+A  +S ++     S + S  N   N          +
Sbjct: 44  RSQRSLALFYDRARLKAYTLKPIQAKNDSESSCSDNNSTSFSAVNETGNLVKISARCQIL 103

Query: 77  AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL 136
             STNILWH   V K DRQQLLQQKGCVIW+TGLSGSGKSTLACALSQ+LH RGKLTYIL
Sbjct: 104 GNSTNILWHDCPVQKCDRQQLLQQKGCVIWLTGLSGSGKSTLACALSQSLHSRGKLTYIL 163

Query: 137 DGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSML 196
           DGDN RHGLNRDLSF+AEDR ENIRRIGEVAKLFADAG+ICI  LISPY+KDRDACR++L
Sbjct: 164 DGDNIRHGLNRDLSFRAEDRSENIRRIGEVAKLFADAGLICITSLISPYQKDRDACRALL 223

Query: 197 PEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEV 248
           PEGDFIEVF+DVPL VCEARDPKGLYKLAR GK+KGFTGIDDPYEPP  CE+
Sbjct: 224 PEGDFIEVFIDVPLHVCEARDPKGLYKLARAGKIKGFTGIDDPYEPPCCCEI 275

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359807000|ref|NP_001241077.1| uncharacterized protein LOC100786331 [Glycine max] gi|255646419|gb|ACU23688.1| unknown [Glycine max]

 Score =  324 bits (830), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 158/245 (64%), Positives = 187/245 (76%), Gaps = 10/245 (4%)

Query: 4   VVAVAVGATRPAICSPSLAEVDFRTSVKMSGFFNVSRLRSLQPIKALEESATASVVQESA 63
           + AV +   R ++  P +A+ D   S+   G           P     +    + + +S 
Sbjct: 31  INAVGLSRGRKSLLKPIMAKEDHGASLIDDG----------NPKCQGHQVNKPNGINQST 80

Query: 64  AISGNNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALS 123
           A+SG +L + S +  S NILWH+  + K DRQQLLQQKGCVIW+TGLSGSGKSTLACALS
Sbjct: 81  ALSGKSLTEMSNIGNSMNILWHECPIQKLDRQQLLQQKGCVIWLTGLSGSGKSTLACALS 140

Query: 124 QALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLIS 183
           ++LH +GKLTYILDGDN RHGLNRDLSF+AEDR ENIRRIGEV+KL ADAGVICIA LIS
Sbjct: 141 RSLHSKGKLTYILDGDNIRHGLNRDLSFRAEDRSENIRRIGEVSKLLADAGVICIASLIS 200

Query: 184 PYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPP 243
           PYRKDRDACR++LPEGDFIEVF+DVPL VCEARDPKGLYKLAR GK+KGFTGIDDPYEPP
Sbjct: 201 PYRKDRDACRALLPEGDFIEVFIDVPLDVCEARDPKGLYKLARAGKIKGFTGIDDPYEPP 260

Query: 244 LNCEV 248
            +CE+
Sbjct: 261 YSCEI 265

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7387809|sp|O49204.1|KAPS_CATRO RecName: Full=Adenylyl-sulfate kinase, chloroplastic; AltName: Full=ATP adenosine-5'-phosphosulfate 3'-phosphotransferase; AltName: Full=Adenosine-5'-phosphosulfate kinase; Short=APS kinase; Flags: Precursor gi|2832300|gb|AAC31145.1| adenosine-5'-phosphosulfate-kinase [Catharanthus roseus]

 Score =  323 bits (828), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 170/283 (60%), Positives = 193/283 (68%), Gaps = 40/283 (14%)

Query: 9   VGATRPAICSPSLAEVDF---------RTSVKMSGFFNV-------SRLRSLQPIKALEE 52
           +G+ +  + S  L E DF          +SVK+   F          +L  L PIKA E 
Sbjct: 2   IGSVKRPVVSCVLPEFDFTESTGLGKKSSSVKLPVNFGAFGSGGGEVKLGFLAPIKATEG 61

Query: 53  SATASV------------------------VQESAAISGNNLCQNSTVAKSTNILWHKNS 88
           S T+S                         +       G  + Q +TV  STNILWHK +
Sbjct: 62  SKTSSFQVNGKVDNFRHLQPSDCNSNSDSSLNNCNGFPGKKILQTTTVGNSTNILWHKCA 121

Query: 89  VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD 148
           V+K +RQ+ LQQ+GCVIWITGLSGSGKSTLACALS+ LH +GKLTYILDGDN RHGLN D
Sbjct: 122 VEKSERQEPLQQRGCVIWITGLSGSGKSTLACALSRGLHAKGKLTYILDGDNVRHGLNSD 181

Query: 149 LSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDV 208
           LSFKAEDR ENIRRIGEVAKLFADAGVICIA LISPYRK  DACRS+LPEGDFIEVFMDV
Sbjct: 182 LSFKAEDRAENIRRIGEVAKLFADAGVICIASLISPYRKPPDACRSLLPEGDFIEVFMDV 241

Query: 209 PLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEVGVH 251
           PL+VCEARDPKGLYKLAR GK+KGFTGIDDPYEPPL  E+ +H
Sbjct: 242 PLKVCEARDPKGLYKLARAGKIKGFTGIDDPYEPPLKSEIVLH 284

Source: Catharanthus roseus

Species: Catharanthus roseus

Genus: Catharanthus

Family: Apocynaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511963|ref|XP_003524691.1| PREDICTED: adenylyl-sulfate kinase, chloroplastic-like [Glycine max]

 Score =  321 bits (822), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 163/258 (63%), Positives = 195/258 (75%), Gaps = 21/258 (8%)

Query: 10  GATRPAICSPSLAEVDFR----TSVKMSGFFN-----VSRLRSLQPIKALEESATAS--- 57
           G  R  +C PS A           + ++G        V R RS +PIK ++E+AT S   
Sbjct: 14  GVFRNIVCGPSPAAETLGFPRLRGISVAGLHRSHRNLVLRARS-KPIK-VKENATVSASL 71

Query: 58  -------VVQESAAISGNNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGL 110
                  +  +  + +G NL Q S VA STNI+WH   + K+DRQQLLQQKGCVIW+TGL
Sbjct: 72  IDDWFKPITAKEDSDAGKNLSQMSNVANSTNIMWHDCPIQKQDRQQLLQQKGCVIWLTGL 131

Query: 111 SGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLF 170
           SGSGKST+ACALS++LH +GKL+YILDGDN RHGLN+DLSF+AEDR ENIRRIGEVAKLF
Sbjct: 132 SGSGKSTIACALSRSLHSKGKLSYILDGDNIRHGLNQDLSFRAEDRSENIRRIGEVAKLF 191

Query: 171 ADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKV 230
           ADAGVICI  LISPY+KDRDACR+++P+GDFIEVF+DVPL VCEARDPKGLYKLAR GK+
Sbjct: 192 ADAGVICITSLISPYQKDRDACRALMPKGDFIEVFIDVPLHVCEARDPKGLYKLARAGKI 251

Query: 231 KGFTGIDDPYEPPLNCEV 248
           KGFTGIDDPYEPP +CE+
Sbjct: 252 KGFTGIDDPYEPPSSCEI 269

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357482591|ref|XP_003611582.1| Adenylyl-sulfate kinase [Medicago truncatula] gi|355512917|gb|AES94540.1| Adenylyl-sulfate kinase [Medicago truncatula]

 Score =  321 bits (822), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 152/200 (76%), Positives = 171/200 (85%), Gaps = 4/200 (2%)

Query: 56  ASVVQESAAISGNNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGK 115
           +S +  SAA SG NL   +T   STNILWH+ S+ K DRQQLLQQKGCV+W+TGLSGSGK
Sbjct: 91  SSFIDHSAAFSGKNLSNLTTNGNSTNILWHECSIQKLDRQQLLQQKGCVVWVTGLSGSGK 150

Query: 116 STLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIG----EVAKLFA 171
           STLACALS++LH RGKLTYILDGDN RHGLNRDLSF+AEDR ENIRRIG    EVAKL A
Sbjct: 151 STLACALSRSLHSRGKLTYILDGDNIRHGLNRDLSFRAEDRSENIRRIGELLREVAKLLA 210

Query: 172 DAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVK 231
           DAGVICI  LISPY+KDRDACR++LP+GDFIEVF+DVPL VCEARDPKGLYKLAR G +K
Sbjct: 211 DAGVICITSLISPYQKDRDACRALLPKGDFIEVFLDVPLAVCEARDPKGLYKLARAGMIK 270

Query: 232 GFTGIDDPYEPPLNCEVGVH 251
           GFTGIDDPYEPP +CE+ +H
Sbjct: 271 GFTGIDDPYEPPCSCEIVLH 290

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480623|ref|XP_002284476.2| PREDICTED: adenylyl-sulfate kinase 1, chloroplastic-like [Vitis vinifera]

 Score =  321 bits (822), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 154/210 (73%), Positives = 177/210 (84%), Gaps = 11/210 (5%)

Query: 39  SRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHKNSVDKRDRQQLL 98
           +R R + PIKA++    A V  ++    G N         STNI+WH+ SVDK +RQ+LL
Sbjct: 45  ARSRHVTPIKAVK----AFVSGQADGAGGKN-------GMSTNIVWHECSVDKLERQRLL 93

Query: 99  QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE 158
           QQKGCVIWITGLSGSGKSTLACALS+ALH+RG LTY+LDGDN RHGLNRDLSF+AEDR E
Sbjct: 94  QQKGCVIWITGLSGSGKSTLACALSRALHFRGNLTYVLDGDNVRHGLNRDLSFRAEDRAE 153

Query: 159 NIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDP 218
           NIRRIGEVAKLF+D+G+ICIA LISPYRKDRDACR+ML EG+FIEVFMD+PL+VCE RDP
Sbjct: 154 NIRRIGEVAKLFSDSGIICIASLISPYRKDRDACRAMLSEGNFIEVFMDIPLEVCEERDP 213

Query: 219 KGLYKLAREGKVKGFTGIDDPYEPPLNCEV 248
           KGLYKLAR GK++GFTGIDDPYEPPLNCEV
Sbjct: 214 KGLYKLARAGKIRGFTGIDDPYEPPLNCEV 243

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15225999|ref|NP_179082.1| Adenylyl-sulfate kinase 1 [Arabidopsis thaliana] gi|7387811|sp|Q43295.1|KAP1_ARATH RecName: Full=Adenylyl-sulfate kinase 1, chloroplastic; AltName: Full=ATP adenosine-5'-phosphosulfate 3'-phosphotransferase; AltName: Full=Adenosine-5'-phosphosulfate kinase; Short=APS kinase; Flags: Precursor gi|414737|emb|CAA53426.1| APS kinase [Arabidopsis thaliana] gi|450235|gb|AAC50035.1| APS kinase [Arabidopsis thaliana] gi|1575322|gb|AAC50034.1| APS kinase [Arabidopsis thaliana] gi|3252812|gb|AAC24182.1| putative adenosine phosphosulfate kinase [Arabidopsis thaliana] gi|15810038|gb|AAL06946.1| At2g14750/F26C24.11 [Arabidopsis thaliana] gi|22135773|gb|AAM91043.1| At2g14750/F26C24.11 [Arabidopsis thaliana] gi|330251236|gb|AEC06330.1| Adenylyl-sulfate kinase 1 [Arabidopsis thaliana]

 Score =  320 bits (821), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 147/175 (84%), Positives = 160/175 (91%)

Query: 74  STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLT 133
           STV  STNI WH+ SV+K DRQ+LL QKGCVIW+TGLSGSGKSTLACAL+Q L+ +GKL 
Sbjct: 73  STVGNSTNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLC 132

Query: 134 YILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACR 193
           YILDGDN RHGLNRDLSFKAEDR ENIRR+GEVAKLFADAG+ICIA LISPYR DRDACR
Sbjct: 133 YILDGDNVRHGLNRDLSFKAEDRAENIRRVGEVAKLFADAGIICIASLISPYRTDRDACR 192

Query: 194 SMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEV 248
           S+LPEGDF+EVFMDVPL VCEARDPKGLYKLAR GK+KGFTGIDDPYEPPLNCE+
Sbjct: 193 SLLPEGDFVEVFMDVPLSVCEARDPKGLYKLARAGKIKGFTGIDDPYEPPLNCEI 247

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
TAIR|locus:2046901	276	APK "APS kinase" [Arabidopsis	0.657	0.641	0.830	1.6e-79
TAIR|locus:2140005	293	AKN2 "APS-kinase 2" [Arabidops	0.784	0.720	0.718	2.6e-79
TAIR|locus:2158626	310	APK4 "adenosine-5'-phosphosulf	0.773	0.670	0.663	3.6e-73
TAIR|locus:2079379	208	APK3 "adenosine-5'-phosphosulf	0.650	0.841	0.771	9.6e-73
TIGR_CMR|CHY_2693	197	CHY_2693 "adenylylsulfate kina	0.631	0.862	0.629	1.4e-55
UNIPROTKB|Q9NDP8	618	Ci-ASAK "ATP sulfurylase/APS k	0.631	0.275	0.588	5.1e-51
UNIPROTKB|Q9KP21	215	cysC "Adenylyl-sulfate kinase"	0.639	0.8	0.563	1.2e-49
TIGR_CMR|VC_2558	215	VC_2558 "adenylylsulfate kinas	0.639	0.8	0.563	1.2e-49
TIGR_CMR|SO_3723	205	SO_3723 "adenylylsulfate kinas	0.635	0.834	0.555	2.9e-48
POMBASE|SPAC1782.11	202	met14 "adenylyl-sulfate kinase	0.639	0.851	0.574	6.9e-47

TAIR|locus:2046901 APK "APS kinase" [Arabidopsis thaliana (taxid:3702)]

 Score = 799 (286.3 bits), Expect = 1.6e-79, P = 1.6e-79
 Identities = 147/177 (83%), Positives = 161/177 (90%)

Query:    74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLT 133
             STV  STNI WH+ SV+K DRQ+LL QKGCVIW+TGLSGSGKSTLACAL+Q L+ +GKL 
Sbjct:    73 STVGNSTNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLC 132

Query:   134 YILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACR 193
             YILDGDN RHGLNRDLSFKAEDR ENIRR+GEVAKLFADAG+ICIA LISPYR DRDACR
Sbjct:   133 YILDGDNVRHGLNRDLSFKAEDRAENIRRVGEVAKLFADAGIICIASLISPYRTDRDACR 192

Query:   194 SMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEVGV 250
             S+LPEGDF+EVFMDVPL VCEARDPKGLYKLAR GK+KGFTGIDDPYEPPLNCE+ +
Sbjct:   193 SLLPEGDFVEVFMDVPLSVCEARDPKGLYKLARAGKIKGFTGIDDPYEPPLNCEISL 249

GO:0000103 "sulfate assimilation" evidence=IEA;IGI;ISS

GO:0004020 "adenylylsulfate kinase activity" evidence=IEA;IDA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=ISS

GO:0009536 "plastid" evidence=TAS

GO:0016310 "phosphorylation" evidence=IDA

GO:0010439 "regulation of glucosinolate biosynthetic process" evidence=IGI

GO:0048232 "male gamete generation" evidence=IGI

TAIR|locus:2140005 AKN2 "APS-kinase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 797 (285.6 bits), Expect = 2.6e-79, P = 2.6e-79
 Identities = 153/213 (71%), Positives = 177/213 (83%)

Query:    38 VSRLRSLQPIKALEESATASVVQESAAISGNNLCQ--NSTVAKSTNILWHKNSVDKRDRQ 95
             V+   S  PI A+  SA AS+  +  A+S   L +  N+   K+ NI+WH++S+ + DRQ
Sbjct:    49 VANSTSFHPISAVNVSAQASLTADFPALSETILKEGRNNGKEKAENIVWHESSICRCDRQ 108

Query:    96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED 155
             QLLQQKGCV+WITGLSGSGKST+ACALS+AL  RGKLTY LDGDN RHGLNRDL+FKAE 
Sbjct:   109 QLLQQKGCVVWITGLSGSGKSTVACALSKALFERGKLTYTLDGDNVRHGLNRDLTFKAEH 168

Query:   156 RVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEA 215
             R ENIRRIGEVAKLFAD GVICIA LISPYR+DRDACRS+LP+GDF+EVFMDVPL VCE+
Sbjct:   169 RTENIRRIGEVAKLFADVGVICIASLISPYRRDRDACRSLLPDGDFVEVFMDVPLHVCES 228

Query:   216 RDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEV 248
             RDPKGLYKLAR GK+KGFTGIDDPYE P+NCEV
Sbjct:   229 RDPKGLYKLARAGKIKGFTGIDDPYEAPVNCEV 261

GO:0000103 "sulfate assimilation" evidence=IEA;IGI;ISS

GO:0004020 "adenylylsulfate kinase activity" evidence=IEA;IGI

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=ISS

GO:0009536 "plastid" evidence=TAS

GO:0016310 "phosphorylation" evidence=IGI

GO:0010439 "regulation of glucosinolate biosynthetic process" evidence=IGI

GO:0048232 "male gamete generation" evidence=IGI

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

TAIR|locus:2158626 APK4 "adenosine-5'-phosphosulfate (APS) kinase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 739 (265.2 bits), Expect = 3.6e-73, P = 3.6e-73
 Identities = 146/220 (66%), Positives = 175/220 (79%)

Query:    29 SVKMSGFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHKNS 88
             S+K+ G  +  R+   +PI A +ES + S   E+  I+G          K  NI+WH   
Sbjct:    48 SLKLRGKIH-RRMSYFRPIMAKDESIS-SRSGETKQING----------KQKNIVWHDCP 95

Query:    89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD 148
             V K DRQ+L++QKGCVIWITGLSGSGKS+LACALS+ALH RGKL+YILDGDN RHGLN D
Sbjct:    96 VTKSDRQELIKQKGCVIWITGLSGSGKSSLACALSRALHNRGKLSYILDGDNVRHGLNSD 155

Query:   149 LSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDV 208
             LSF+A+DR ENIRR+GEVAKLFAD+G+ICIA LISPYR +R ACR++LP+GDFIEVFMDV
Sbjct:   156 LSFEADDRAENIRRVGEVAKLFADSGIICIASLISPYRIERAACRALLPQGDFIEVFMDV 215

Query:   209 PLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEV 248
             PL VCEARDPKGLYK AR GK+KGFTG+DDPYE PL+CE+
Sbjct:   216 PLHVCEARDPKGLYKRARAGKIKGFTGVDDPYEAPLDCEI 255

GO:0000103 "sulfate assimilation" evidence=IEA;ISS

GO:0004020 "adenylylsulfate kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=ISS

GO:0009536 "plastid" evidence=TAS

GO:0048232 "male gamete generation" evidence=IGI

TAIR|locus:2079379 APK3 "adenosine-5'-phosphosulfate (APS) kinase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 735 (263.8 bits), Expect = 9.6e-73, P = 9.6e-73
 Identities = 135/175 (77%), Positives = 154/175 (88%)

Query:    74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLT 133
             STV  STNI W ++ + K +RQ+LL QKGCV+WITGLSGSGKSTLAC+LS+ L+ RGKL+
Sbjct:     2 STVGNSTNIFWQESPIGKTERQKLLNQKGCVVWITGLSGSGKSTLACSLSRELNNRGKLS 61

Query:   134 YILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACR 193
             YILDGDN RHGLN+DL FKAEDRVENIRR+GEVAKLFADAG+ICIA LISPYRKDRDACR
Sbjct:    62 YILDGDNLRHGLNKDLGFKAEDRVENIRRVGEVAKLFADAGLICIASLISPYRKDRDACR 121

Query:   194 SMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEV 248
              M+    FIEVFM++ LQ+CEARDPKGLYKLAR GK+KGFTGIDDPYE PLNCE+
Sbjct:   122 EMIQNSSFIEVFMNMSLQLCEARDPKGLYKLARAGKIKGFTGIDDPYESPLNCEI 176

GO:0000103 "sulfate assimilation" evidence=IEA;ISS

GO:0004020 "adenylylsulfate kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

GO:0048232 "male gamete generation" evidence=IGI

TIGR_CMR|CHY_2693 CHY_2693 "adenylylsulfate kinase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
 Identities = 107/170 (62%), Positives = 129/170 (75%)

Query:    79 STNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG 138
             + N+ WH+  +   DR++LL QKG VIW+TGLSGSGKST+A  L   L+ +GKL Y+LDG
Sbjct:     2 ANNLFWHEGKITAEDREKLLGQKGVVIWLTGLSGSGKSTIARELEAVLYRQGKLAYVLDG 61

Query:   139 DNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPE 198
             DN R GLN+DL F  +DR ENIRRIGEVAKLF DAG+I I   ISP+R DRD  RS+LP 
Sbjct:    62 DNIRMGLNKDLGFSEKDRQENIRRIGEVAKLFVDAGIIVITAFISPFRADRDKVRSILPA 121

Query:   199 GDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEV 248
             G FIEVF+D PL+VCEARD KGLY+ AREGK+  FTGI  PYEPP+  E+
Sbjct:   122 GKFIEVFVDCPLEVCEARDVKGLYQKAREGKIPEFTGITSPYEPPVKPEI 171

GO:0004020 "adenylylsulfate kinase activity" evidence=ISS

GO:0006790 "sulfur compound metabolic process" evidence=ISS

UNIPROTKB|Q9NDP8 Ci-ASAK "ATP sulfurylase/APS kinase" [Ciona intestinalis (taxid:7719)]

 Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
 Identities = 103/175 (58%), Positives = 130/175 (74%)

Query:    79 STNILWHKNSVDKRDRQQLLQQ---KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYI 135
             S+NI++ ++ V + +R Q++ +   +GC +W TGLSG+GKSTL+  L + L  +G   Y 
Sbjct:    19 SSNIVYQQHHVSRDERGQVMGKGAFRGCTVWFTGLSGAGKSTLSMKLEEYLCSKGIPAYS 78

Query:   136 LDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSM 195
             LDGDN RHGLN+DL F   DR ENIRRIGEVAKLFADAGV+C+   ISPYRKDR + R +
Sbjct:    79 LDGDNIRHGLNKDLGFAPADREENIRRIGEVAKLFADAGVVCLVSFISPYRKDRQSARRV 138

Query:   196 LPEGD--FIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEV 248
               + +  FIEVF+D PLQVCE RD KGLYK AR+G++KGFTGID PYEPP N EV
Sbjct:   139 HNKSNLPFIEVFVDTPLQVCEGRDVKGLYKKARQGQIKGFTGIDSPYEPPENAEV 193

GO:0004781 "sulfate adenylyltransferase (ATP) activity" evidence=ISS

GO:0016779 "nucleotidyltransferase activity" evidence=ISS

UNIPROTKB|Q9KP21 cysC "Adenylyl-sulfate kinase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
 Identities = 97/172 (56%), Positives = 125/172 (72%)

Query:    77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL 136
             AK  N++WH+++VDK  R  L QQ+  V+W TGLSG+GKST+A AL   L   G  TY+L
Sbjct:    14 AKPENVVWHRHAVDKAQRATLKQQRPAVLWFTGLSGAGKSTVAGALENRLAALGYHTYLL 73

Query:   137 DGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSML 196
             DGDN RHGL  DL F  +DR ENIRRIGE+AKL +DAG+I +   ISP+R +R   R +L
Sbjct:    74 DGDNVRHGLCSDLGFSEQDRRENIRRIGELAKLMSDAGLIVLTAFISPHRAERQMVRDLL 133

Query:   197 PEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEV 248
             P G+F+EV+++  L VCEARDPKGLYK AR G+++ FTGID  YE PLN ++
Sbjct:   134 PNGEFLEVYVNTSLDVCEARDPKGLYKKARAGEIRQFTGIDSAYEAPLNPDI 185

GO:0004020 "adenylylsulfate kinase activity" evidence=ISS

GO:0006790 "sulfur compound metabolic process" evidence=ISS

TIGR_CMR|VC_2558 VC_2558 "adenylylsulfate kinase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
 Identities = 97/172 (56%), Positives = 125/172 (72%)

Query:    77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL 136
             AK  N++WH+++VDK  R  L QQ+  V+W TGLSG+GKST+A AL   L   G  TY+L
Sbjct:    14 AKPENVVWHRHAVDKAQRATLKQQRPAVLWFTGLSGAGKSTVAGALENRLAALGYHTYLL 73

Query:   137 DGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSML 196
             DGDN RHGL  DL F  +DR ENIRRIGE+AKL +DAG+I +   ISP+R +R   R +L
Sbjct:    74 DGDNVRHGLCSDLGFSEQDRRENIRRIGELAKLMSDAGLIVLTAFISPHRAERQMVRDLL 133

Query:   197 PEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEV 248
             P G+F+EV+++  L VCEARDPKGLYK AR G+++ FTGID  YE PLN ++
Sbjct:   134 PNGEFLEVYVNTSLDVCEARDPKGLYKKARAGEIRQFTGIDSAYEAPLNPDI 185

GO:0004020 "adenylylsulfate kinase activity" evidence=ISS

GO:0006790 "sulfur compound metabolic process" evidence=ISS

TIGR_CMR|SO_3723 SO_3723 "adenylylsulfate kinase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
 Identities = 95/171 (55%), Positives = 124/171 (72%)

Query:    80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139
             +NI+WH++SVD+  R +L  Q   ++W TGLSG+GKSTLA AL +AL   G  TY+LDGD
Sbjct:     2 SNIVWHQHSVDQAARARLKGQNPVLLWFTGLSGAGKSTLAGALERALFEAGFHTYLLDGD 61

Query:   140 NCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEG 199
             N RHGL +DL F   DR EN+RR+GEVAKL  DAG++ ++  ISP R++RD+ R+  PEG
Sbjct:    62 NVRHGLCKDLGFSVADRDENLRRVGEVAKLMVDAGLVVLSAFISPTREERDSIRARFPEG 121

Query:   200 DFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEVGV 250
              FIEV +  PL VCE RDPKGLY  AR+G++  FTGI  PYE PL+ E+ +
Sbjct:   122 QFIEVHVSTPLSVCELRDPKGLYVKARKGEIAHFTGISSPYEAPLSAELTI 172

GO:0004020 "adenylylsulfate kinase activity" evidence=ISS

GO:0006790 "sulfur compound metabolic process" evidence=ISS

POMBASE|SPAC1782.11 met14 "adenylyl-sulfate kinase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
 Identities = 100/174 (57%), Positives = 121/174 (69%)

Query:    79 STNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG 138
             +TNI +H  SV K +R + +   G  IW+TGLS SGKST+ACAL Q L  RG  TY LDG
Sbjct:     2 ATNITFHPGSVTKEERIKFVGHPGMTIWMTGLSASGKSTIACALEQYLLQRGVTTYRLDG 61

Query:   139 DNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSM-LP 197
             DN R GLN DL F  +DR ENIRRIG VAKLFADA V+ +   ISPYRKDRD  R     
Sbjct:    62 DNVRFGLNSDLGFSEQDRNENIRRIGHVAKLFADACVVAVTSFISPYRKDRDQAREFHKK 121

Query:   198 EG-DFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEVGV 250
             +G  FIEV+++ P++V E RDPKGLYK AR G++K FTGI  PYE P++ E+ V
Sbjct:   122 DGLPFIEVYVECPVEVAEQRDPKGLYKRARAGEIKEFTGISAPYEAPISPEIVV 175

GO:0000103 "sulfate assimilation" evidence=IC

GO:0004020 "adenylylsulfate kinase activity" evidence=ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0009086 "methionine biosynthetic process" evidence=IMP

GO:0019344 "cysteine biosynthetic process" evidence=IEA

GO:0071276 "cellular response to cadmium ion" evidence=IMP

GO:0071585 "detoxification of cadmium ion" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A8H0A6	CYSC_SHEPA	2, ., 7, ., 1, ., 2, 5	0.5380	0.6356	0.8341	yes	no
Q5HL02	CYSC_STAEQ	2, ., 7, ., 1, ., 2, 5	0.5314	0.6505	0.8793	yes	no
B2VG00	CYSC_ERWT9	2, ., 7, ., 1, ., 2, 5	0.5714	0.6245	0.8358	yes	no
A3D819	CYSC_SHEB5	2, ., 7, ., 1, ., 2, 5	0.5497	0.6356	0.8341	yes	no
Q49UM5	CYSC_STAS1	2, ., 7, ., 1, ., 2, 5	0.5606	0.6431	0.8480	yes	no
Q7MPF0	CYSC_VIBVY	2, ., 7, ., 1, ., 2, 5	0.5847	0.6356	0.8260	yes	no
B7LWK5	CYSC_ESCF3	2, ., 7, ., 1, ., 2, 5	0.5470	0.6319	0.8457	yes	no
A1AEU4	CYSC_ECOK1	2, ., 7, ., 1, ., 2, 5	0.5535	0.6245	0.8358	yes	no
B9DLK2	CYSC_STACT	2, ., 7, ., 1, ., 2, 5	0.5542	0.6505	0.8793	yes	no
Q0HYA3	CYSC_SHESR	2, ., 7, ., 1, ., 2, 5	0.5555	0.6356	0.8341	yes	no
B9M543	CYSC_GEOSF	2, ., 7, ., 1, ., 2, 5	0.5625	0.6542	0.8669	yes	no
B5XV31	CYSC_KLEP3	2, ., 7, ., 1, ., 2, 5	0.5773	0.6245	0.8358	yes	no
A8ANW4	CYSC_CITK8	2, ., 7, ., 1, ., 2, 5	0.5714	0.6245	0.8358	yes	no
A6WJU6	CYSC_SHEB8	2, ., 7, ., 1, ., 2, 5	0.5438	0.6356	0.8341	yes	no
A1RGG0	CYSC_SHESW	2, ., 7, ., 1, ., 2, 5	0.5497	0.6356	0.8341	yes	no
Q88X60	CYSC_LACPL	2, ., 7, ., 1, ., 2, 5	0.5828	0.6505	0.8454	yes	no
Q97MT8	CYSC_CLOAB	2, ., 7, ., 1, ., 2, 5	0.5738	0.6505	0.875	yes	no
A6TD42	CYSC_KLEP7	2, ., 7, ., 1, ., 2, 5	0.5773	0.6245	0.8358	yes	no
Q87SX6	CYSC_VIBPA	2, ., 7, ., 1, ., 2, 5	0.5714	0.6505	0.8536	yes	no
O06735	CYSC2_BACSU	2, ., 7, ., 1, ., 2, 5	0.5639	0.6394	0.8643	yes	no
Q8CR04	CYSC_STAES	2, ., 7, ., 1, ., 2, 5	0.5314	0.6505	0.8793	yes	no
Q4L9E6	CYSC_STAHJ	2, ., 7, ., 1, ., 2, 5	0.5444	0.6691	0.9045	yes	no
B7MYQ5	CYSC_ECO81	2, ., 7, ., 1, ., 2, 5	0.5535	0.6245	0.8358	yes	no
A0KTI5	CYSC_SHESA	2, ., 7, ., 1, ., 2, 5	0.5497	0.6356	0.8341	yes	no
A4SRG6	CYSC_AERS4	2, ., 7, ., 1, ., 2, 5	0.5798	0.6282	0.8622	yes	no
A4Y9X0	CYSC_SHEPC	2, ., 7, ., 1, ., 2, 5	0.5497	0.6356	0.8341	yes	no
Q8EB13	CYSC_SHEON	2, ., 7, ., 1, ., 2, 5	0.5555	0.6356	0.8341	yes	no
B7MKM4	CYSC_ECO45	2, ., 7, ., 1, ., 2, 5	0.5535	0.6245	0.8358	yes	no
Q9KP21	CYSC_VIBCH	2, ., 7, ., 1, ., 2, 5	0.5639	0.6394	0.8	yes	no
Q0HFM7	CYSC_SHESM	2, ., 7, ., 1, ., 2, 5	0.5438	0.6356	0.8341	yes	no
B7NT94	CYSC_ECO7I	2, ., 7, ., 1, ., 2, 5	0.5535	0.6245	0.8358	yes	no
Q12QM6	CYSC_SHEDO	2, ., 7, ., 1, ., 2, 5	0.5497	0.6356	0.8341	yes	no
Q9KCT0	CYSC1_BACHD	2, ., 7, ., 1, ., 2, 5	0.5780	0.6431	0.8564	yes	no
Q43295	KAP1_ARATH	2, ., 7, ., 1, ., 2, 5	0.84	0.6505	0.6340	yes	no
B7UHG9	CYSC_ECO27	2, ., 7, ., 1, ., 2, 5	0.5535	0.6245	0.8358	yes	no
A1U3X8	CYSC_MARAV	2, ., 7, ., 1, ., 2, 5	0.5976	0.6282	0.8492	yes	no
Q8EQN3	CYSC_OCEIH	2, ., 7, ., 1, ., 2, 5	0.5838	0.6431	0.8693	yes	no
A7MJ70	CYSC_CROS8	2, ., 7, ., 1, ., 2, 5	0.5833	0.6245	0.8358	yes	no
Q8DE75	CYSC_VIBVU	2, ., 7, ., 1, ., 2, 5	0.5847	0.6356	0.8260	yes	no
Q1R7U1	CYSC_ECOUT	2, ., 7, ., 1, ., 2, 5	0.5535	0.6245	0.8358	yes	no
Q8ZBP3	CYSC_YERPE	2, ., 7, ., 1, ., 2, 5	0.5681	0.6542	0.8262	yes	no
B8EE63	CYSC_SHEB2	2, ., 7, ., 1, ., 2, 5	0.5438	0.6356	0.8341	yes	no
A5N960	CYSC_CLOK5	2, ., 7, ., 1, ., 2, 5	0.5862	0.6431	0.8693	yes	no
A0KP33	CYSC_AERHH	2, ., 7, ., 1, ., 2, 5	0.5857	0.6282	0.8578	yes	no
Q8FEJ2	CYSC_ECOL6	2, ., 7, ., 1, ., 2, 5	0.5535	0.6245	0.8358	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.1.25	0.946
3rd Layer	2.7.1	0.963

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	269
PRK03846	198	PRK03846, PRK03846, adenylylsulfate kinase; Provis	1e-101
COG0529	197	COG0529, CysC, Adenylylsulfate kinase and related	1e-99
cd02027	149	cd02027, APSK, Adenosine 5'-phosphosulfate kinase	3e-96
pfam01583	157	pfam01583, APS_kinase, Adenylylsulphate kinase	3e-95
PRK05506	632	PRK05506, PRK05506, bifunctional sulfate adenylylt	4e-90
TIGR00455	184	TIGR00455, apsK, adenylylsulfate kinase (apsK)	1e-86
PRK00889	175	PRK00889, PRK00889, adenylylsulfate kinase; Provis	6e-64
PRK05537	568	PRK05537, PRK05537, bifunctional sulfate adenylylt	1e-55
PRK05541	176	PRK05541, PRK05541, adenylylsulfate kinase; Provis	7e-28
pfam13671	143	pfam13671, AAA_33, AAA domain	2e-07
cd02021	150	cd02021, GntK, Gluconate kinase (GntK) catalyzes t	8e-07
pfam13207	114	pfam13207, AAA_17, AAA domain	9e-06
cd01983	99	cd01983, Fer4_NifH, The Fer4_NifH superfamily cont	2e-04
pfam13481	154	pfam13481, AAA_25, AAA domain	3e-04
COG3265	161	COG3265, GntK, Gluconate kinase [Carbohydrate tran	5e-04
smart00382	148	smart00382, AAA, ATPases associated with a variety	0.001
cd02019	69	cd02019, NK, Nucleoside/nucleotide kinase (NK) is	0.002

>gnl|CDD|179661 PRK03846, PRK03846, adenylylsulfate kinase; Provisional

 Score =  293 bits (751), Expect = e-101
 Identities = 100/170 (58%), Positives = 122/170 (71%)

Query: 79  STNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG 138
             NI+WH++ V K  R+QL   KG V+W TGLSGSGKST+A AL +ALH  G  TY+LDG
Sbjct: 1   DENIVWHQHPVTKAQREQLHGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDG 60

Query: 139 DNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPE 198
           DN RHGL  DL F   DR ENIRR+GEVAKL  DAG++ +   ISP+R +R   R  L E
Sbjct: 61  DNVRHGLCSDLGFSDADRKENIRRVGEVAKLMVDAGLVVLTAFISPHRAERQMVRERLGE 120

Query: 199 GDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEV 248
           G+FIEVF+D PL +CEARDPKGLYK AR G+++ FTGID  YE P + E+
Sbjct: 121 GEFIEVFVDTPLAICEARDPKGLYKKARAGEIRNFTGIDSVYEAPESPEI 170

Length = 198

>gnl|CDD|223603 COG0529, CysC, Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

 Score =  289 bits (741), Expect = 1e-99
 Identities = 108/169 (63%), Positives = 129/169 (76%)

Query: 80  TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139
            NI+WH +SV K++R+ L  QKG VIW TGLSGSGKST+A AL + L  +G   Y+LDGD
Sbjct: 1   ENIVWHPHSVTKQEREALKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGD 60

Query: 140 NCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEG 199
           N RHGLNRDL F  EDR+ENIRR+ EVAKL ADAG+I I   ISPYR+DR   R +L EG
Sbjct: 61  NVRHGLNRDLGFSREDRIENIRRVAEVAKLLADAGLIVIVAFISPYREDRQMARELLGEG 120

Query: 200 DFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEV 248
           +FIEV++D PL+VCE RDPKGLYK AR G++K FTGID PYE P N E+
Sbjct: 121 EFIEVYVDTPLEVCERRDPKGLYKKARAGEIKNFTGIDSPYEAPENPEL 169

Length = 197

>gnl|CDD|238985 cd02027, APSK, Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

 Score =  278 bits (714), Expect = 3e-96
 Identities = 99/145 (68%), Positives = 117/145 (80%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRI 163
           VIW+TGLSGSGKST+A AL + L  RG+  Y+LDGDN RHGLN+DL F  EDR ENIRRI
Sbjct: 1   VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKDLGFSREDREENIRRI 60

Query: 164 GEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK 223
            EVAKL ADAG+I IA  ISPYR+DR+A R ++  GDF+EVF+D PL+VCE RDPKGLYK
Sbjct: 61  AEVAKLLADAGLIVIAAFISPYREDREAARKIIGGGDFLEVFVDTPLEVCEQRDPKGLYK 120

Query: 224 LAREGKVKGFTGIDDPYEPPLNCEV 248
            AR G++KGFTGIDDPYE P N ++
Sbjct: 121 KARAGEIKGFTGIDDPYEAPENPDL 145

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate. Length = 149

>gnl|CDD|216586 pfam01583, APS_kinase, Adenylylsulphate kinase

 Score =  276 bits (708), Expect = 3e-95
 Identities = 99/148 (66%), Positives = 113/148 (76%)

Query: 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENI 160
           +GC IW TGLSGSGKST+A AL + L  +G   Y+LDGDN RHGLN+DL F  EDR ENI
Sbjct: 1   RGCTIWFTGLSGSGKSTIANALERKLFAQGISVYVLDGDNVRHGLNKDLGFSEEDRTENI 60

Query: 161 RRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKG 220
           RRI EVAKLFADAG+I I   ISPYR DRD  R +  +G FIEVF+D PL+VCE RDPKG
Sbjct: 61  RRIAEVAKLFADAGLIVITSFISPYRADRDMARELHEDGKFIEVFVDTPLEVCEQRDPKG 120

Query: 221 LYKLAREGKVKGFTGIDDPYEPPLNCEV 248
           LYK AR G++KGFTGID PYE P N E+
Sbjct: 121 LYKKARAGEIKGFTGIDSPYEAPENPEL 148

Enzyme that catalyzes the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. This domain contains an ATP binding P-loop motif. Length = 157

>gnl|CDD|180120 PRK05506, PRK05506, bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

 Score =  279 bits (715), Expect = 4e-90
 Identities = 99/188 (52%), Positives = 129/188 (68%), Gaps = 9/188 (4%)

Query: 73  NSTVA---------KSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALS 123
           N+TV          ++TN+ W  + V +  R     QK   +W TGLSGSGKST+A  + 
Sbjct: 422 NATVGAGMIDFALRRATNVHWQASDVSREARAARKGQKPATVWFTGLSGSGKSTIANLVE 481

Query: 124 QALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLIS 183
           + LH  G+ TY+LDGDN RHGLNRDL F   DRVENIRR+ EVA+L ADAG+I +   IS
Sbjct: 482 RRLHALGRHTYLLDGDNVRHGLNRDLGFSDADRVENIRRVAEVARLMADAGLIVLVSFIS 541

Query: 184 PYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPP 243
           P+R++R+  R++  EG+F+EVF+D PL+VCEARDPKGLY  AR G++K FTGID PYE P
Sbjct: 542 PFREERELARALHGEGEFVEVFVDTPLEVCEARDPKGLYAKARAGEIKNFTGIDSPYEAP 601

Query: 244 LNCEVGVH 251
            N E+ + 
Sbjct: 602 ENPELRLD 609

Length = 632

>gnl|CDD|129547 TIGR00455, apsK, adenylylsulfate kinase (apsK)

 Score =  255 bits (654), Expect = 1e-86
 Identities = 103/165 (62%), Positives = 121/165 (73%), Gaps = 1/165 (0%)

Query: 84  WHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH 143
           WH   + K +RQ L   +G VIW+TGLSGSGKST+A AL + L  +G   Y+LDGDN RH
Sbjct: 1   WHPA-ITKDERQALNGHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRH 59

Query: 144 GLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIE 203
           GLN+DL F  EDR ENIRRIGEVAKLF   G+I I   ISPYR DR   R ++ +G+FIE
Sbjct: 60  GLNKDLGFSEEDRKENIRRIGEVAKLFVRNGIIVITSFISPYRADRQMVRELIEKGEFIE 119

Query: 204 VFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEV 248
           VF+D PL+VCE RDPKGLYK AR G++KGFTGID PYE P N EV
Sbjct: 120 VFVDCPLEVCEQRDPKGLYKKARNGEIKGFTGIDSPYEAPENPEV 164

This protein, adenylylsulfate kinase, is often found as a fusion protein with sulfate adenylyltransferase. Important residue (active site in E.coli) is residue 100 of the seed alignment [Central intermediary metabolism, Sulfur metabolism]. Length = 184

>gnl|CDD|179157 PRK00889, PRK00889, adenylylsulfate kinase; Provisional

 Score =  197 bits (503), Expect = 6e-64
 Identities = 81/150 (54%), Positives = 103/150 (68%), Gaps = 2/150 (1%)

Query: 99  QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE 158
           +Q+G  +W TGLSG+GK+T+A AL++ L   G    +LDGD  R  L++ L F  EDR  
Sbjct: 1   KQRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLSKGLGFSKEDRDT 60

Query: 159 NIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDP 218
           NIRRIG VA L    GVI +   ISPYR+ R+  R+ +   +F+EVF+D PL+VCE RD 
Sbjct: 61  NIRRIGFVANLLTRHGVIVLVSAISPYRETREEVRANIG--NFLEVFVDAPLEVCEQRDV 118

Query: 219 KGLYKLAREGKVKGFTGIDDPYEPPLNCEV 248
           KGLY  AR G++K FTGIDDPYEPPLN EV
Sbjct: 119 KGLYAKARAGEIKHFTGIDDPYEPPLNPEV 148

Length = 175

>gnl|CDD|180124 PRK05537, PRK05537, bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

 Score =  187 bits (477), Expect = 1e-55
 Identities = 79/153 (51%), Positives = 96/153 (62%), Gaps = 2/153 (1%)

Query: 100 QKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE 158
           ++G  ++ TGLSG+GKST+A AL   L   RG+   +LDGD  R  L+ +L F  EDR  
Sbjct: 390 KQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLSSELGFSKEDRDL 449

Query: 159 NIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPE-GDFIEVFMDVPLQVCEARD 217
           NI RIG VA      G I I   I+PYR  R   R M+   G FIEV +  PL+VCE RD
Sbjct: 450 NILRIGFVASEITKNGGIAICAPIAPYRATRREVREMIEAYGGFIEVHVATPLEVCEQRD 509

Query: 218 PKGLYKLAREGKVKGFTGIDDPYEPPLNCEVGV 250
            KGLY  AREGK+KGFTGI DPYEPP N E+ +
Sbjct: 510 RKGLYAKAREGKIKGFTGISDPYEPPANPELVI 542

Length = 568

>gnl|CDD|235498 PRK05541, PRK05541, adenylylsulfate kinase; Provisional

 Score =  105 bits (263), Expect = 7e-28
 Identities = 52/144 (36%), Positives = 78/144 (54%), Gaps = 3/144 (2%)

Query: 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVEN 159
             G VIWITGL+GSGK+T+A AL + L  +      LDGD  R  L     +  + R+E 
Sbjct: 5   PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREILGHY-GYDKQSRIEM 63

Query: 160 IRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPK 219
             +  ++AK  AD G+I I   IS + +     R  LP  ++ EV++   ++    RD K
Sbjct: 64  ALKRAKLAKFLADQGMIVIVTTISMFDEIYAYNRKHLP--NYFEVYLKCDMEELIRRDQK 121

Query: 220 GLYKLAREGKVKGFTGIDDPYEPP 243
           GLY  A +G++K   G+D P++ P
Sbjct: 122 GLYTKALKGEIKNVVGVDIPFDEP 145

Length = 176

>gnl|CDD|222307 pfam13671, AAA_33, AAA domain

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 32/121 (26%), Positives = 49/121 (40%), Gaps = 15/121 (12%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDL------SFKAEDRV 157
           +I + GL GSGKST A  L + L        +L  D  R  L  D         +A  RV
Sbjct: 1   LILMVGLPGSGKSTFARRLLRELGA-----VVLSSDTLRKRLRGDGPPDISYYARASGRV 55

Query: 158 ENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEG--DFIEVFMDVPLQVCEA 215
              +R+ E+A+    AG   I    +  R++R     +          V+++ P +V   
Sbjct: 56  --YQRLLELAREALRAGRPVIVDATNLSREERARLIDLARRYGAPVRIVYLEAPEEVLRE 113

Query: 216 R 216
           R
Sbjct: 114 R 114

This family of domains contain only a P-loop motif, that is characteristic of the AAA superfamily. Many of the proteins in this family are just short fragments so there is no Walker B motif. Length = 143

>gnl|CDD|238979 cd02021, GntK, Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

 Score = 47.2 bits (113), Expect = 8e-07
 Identities = 38/135 (28%), Positives = 54/135 (40%), Gaps = 25/135 (18%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKA-----EDR-- 156
           +I + G+SGSGKST+  AL++ L       +I DGD+     N            EDR  
Sbjct: 1   IIVVMGVSGSGKSTVGKALAERLGAP----FI-DGDDLHPPANIAKMAAGIPLNDEDRWP 55

Query: 157 -VENIRRIGEVAKLFADAGVICIAC--LISPYRKDRDACRSMLPEGDFIEVFMDVPLQVC 213
            ++ +          A  GV+ +AC  L   Y   RD  R          V +D P +V 
Sbjct: 56  WLQALTDALLAKLASAGEGVV-VACSALKRIY---RDILRGGAANPRVRFVHLDGPREVL 111

Query: 214 EARDPKGLYKLAREG 228
             R        AR+G
Sbjct: 112 AERL------AARKG 120

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits. Length = 150

>gnl|CDD|221983 pfam13207, AAA_17, AAA domain

 Score = 43.4 bits (102), Expect = 9e-06
 Identities = 34/113 (30%), Positives = 48/113 (42%), Gaps = 11/113 (9%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRI 163
           +I ITG  GSGKSTLA  L++ L         LD      GL      + +D   ++  +
Sbjct: 1   IILITGPPGSGKSTLAKKLAEKLGIP---VISLDDLLREEGLAELDDGELDDIDIDLELL 57

Query: 164 GEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEAR 216
            E+    A    +     I   R+     R  L E D + VF+D+PL  C  R
Sbjct: 58  EEILDELAKQEWV-----IDGVRESTLELR--LEEADLV-VFLDLPLPACRFR 102

Length = 114

>gnl|CDD|238941 cd01983, Fer4_NifH, The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 107 ITGLSGSGKSTLACALSQALHWRGKLTYILD 137
           +TG  G GK+TLA  L+ AL  RGK   ++D
Sbjct: 4   VTGKGGVGKTTLAANLAAALAKRGKRVLLID 34

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion. Length = 99

>gnl|CDD|222165 pfam13481, AAA_25, AAA domain

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 21/88 (23%)

Query: 101 KGCVIWITGLSGSGKSTLACALSQAL----HWRGKL------TYILDGDNCRHGLNRDLS 150
           +G +  + G  G+GKSTLA  L+ A+     + G           LDG++   GL R   
Sbjct: 32  RGGLTLLAGAPGTGKSTLALDLAAAVATGRPFLGPFPVEPGRVLYLDGEDSEAGLRR--- 88

Query: 151 FKAEDRVENIRRIGEVAKLFADAGVICI 178
                    +R +GE  +      ++ I
Sbjct: 89  --------RLRALGEALEEIEGPDLVVI 108

This AAA domain is found in a wide variety of presumed DNA repair proteins. Length = 154

>gnl|CDD|225804 COG3265, GntK, Gluconate kinase [Carbohydrate transport and metabolism]

 Score = 39.2 bits (92), Expect = 5e-04
 Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 14/114 (12%)

Query: 109 GLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD-----LSFKAEDRVENIRRI 163
           G+SGSGKST+  AL++ L       +I DGD+     N +     +    +DR   +  +
Sbjct: 2   GVSGSGKSTVGSALAERLGA----KFI-DGDDLHPPANIEKMSAGIPLNDDDRWPWLEAL 56

Query: 164 GEVAKLFADAG-VICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEAR 216
           G+ A   A     + IAC  +  R  RD  R   P   F  V++D    +   R
Sbjct: 57  GDAAASLAQKNKHVVIAC-SALKRSYRDLLREANPGLRF--VYLDGDFDLILER 107

Length = 161

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 38.1 bits (88), Expect = 0.001
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 1/68 (1%)

Query: 107 ITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE-NIRRIGE 165
           I G  GSGK+TLA AL++ L   G     +DG++    +   L        + +      
Sbjct: 7   IVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELR 66

Query: 166 VAKLFADA 173
           +    A A
Sbjct: 67  LRLALALA 74

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|238977 cd02019, NK, Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

 Score = 35.4 bits (82), Expect = 0.002
 Identities = 15/27 (55%), Positives = 19/27 (70%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRG 130
           +I ITG SGSGKST+A  L++ L  R 
Sbjct: 1   IIAITGGSGSGKSTVAKKLAEQLGGRS 27

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate. Length = 69

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	269
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	100.0
KOG0635	207	consensus Adenosine 5'-phosphosulfate kinase [Inor	100.0
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	100.0
KOG4238	627	consensus Bifunctional ATP sulfurylase/adenosine 5	99.97
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.96
PRK03846	198	adenylylsulfate kinase; Provisional	99.93
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	99.92
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	99.87
PRK00889	175	adenylylsulfate kinase; Provisional	99.86
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	99.82
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.74
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.73
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.73
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.72
PRK05541	176	adenylylsulfate kinase; Provisional	99.72
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.72
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.72
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.72
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	99.69
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.68
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.64
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.64
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.63
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.63
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.63
COG3265	161	GntK Gluconate kinase [Carbohydrate transport and	99.62
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.62
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.61
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.61
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.6
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.6
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.59
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.59
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.59
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.58
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.58
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.58
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.58
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.58
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.58
cd03246	173	ABCC_Protease_Secretion This family represents the	99.57
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.57
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.57
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.57
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.56
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.56
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.56
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.56
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.56
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.56
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.56
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.56
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.56
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.56
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.56
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.56
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.56
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.55
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.55
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.55
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.55
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.55
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.55
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.55
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.55
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.55
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.55
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.55
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.55
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.54
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.54
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.54
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.54
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.54
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.54
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.54
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.54
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.54
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.54
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.54
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.54
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.54
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.54
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.54
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.53
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.53
COG4559	259	ABC-type hemin transport system, ATPase component	99.53
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.53
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.53
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.53
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.53
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.53
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.53
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.53
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.53
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.53
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.53
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.53
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.53
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.52
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.52
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.52
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.52
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.52
PRK10908	222	cell division protein FtsE; Provisional	99.52
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.52
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.52
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.52
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.52
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.52
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.52
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	99.52
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.52
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.52
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.52
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.52
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.52
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.51
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.51
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.51
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.51
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.51
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.51
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.51
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.51
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.51
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.51
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.51
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.51
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.51
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.51
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.51
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.51
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.51
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.5
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.5
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.5
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	99.5
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.5
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.5
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.5
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.5
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.5
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.5
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.5
KOG3354	191	consensus Gluconate kinase [Carbohydrate transport	99.5
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.5
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.5
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.5
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.49
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.49
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.49
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.49
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.49
PRK09825	176	idnK D-gluconate kinase; Provisional	99.49
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.49
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.49
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.49
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.49
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.49
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.49
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.49
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.49
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.49
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.49
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.49
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.49
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.49
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.48
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.48
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.48
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.48
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.48
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.48
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.48
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.48
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.48
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.48
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.48
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.48
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.48
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.48
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.48
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.48
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.48
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.48
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.47
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.47
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.47
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.47
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.47
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.47
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.47
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.47
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.47
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.47
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.47
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.47
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.47
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.47
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.47
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.46
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.46
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.46
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.46
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.46
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.46
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.46
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.46
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.46
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.46
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.46
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.46
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.46
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.46
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.46
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.46
PRK11545	163	gntK gluconate kinase 1; Provisional	99.46
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.46
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.45
COG4598	256	HisP ABC-type histidine transport system, ATPase c	99.45
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.45
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.45
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.45
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.45
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.45
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.45
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.45
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.45
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.45
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.45
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.45
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.45
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.45
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.45
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.45
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.45
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.45
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.45
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.45
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.45
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.45
COG4987	573	CydC ABC-type transport system involved in cytochr	99.44
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.44
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.44
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.44
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.44
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.44
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.44
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.44
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.44
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.44
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.44
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.44
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.44
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.44
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.44
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.43
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.43
PRK10938	490	putative molybdenum transport ATP-binding protein	99.43
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.43
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.43
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.43
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.43
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.43
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.43
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.43
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.43
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.43
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.43
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.42
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.42
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.42
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.42
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.42
COG4181	228	Predicted ABC-type transport system involved in ly	99.42
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.42
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.41
COG4988	559	CydD ABC-type transport system involved in cytochr	99.41
KOG0056	790	consensus Heavy metal exporter HMT1, ABC superfami	99.41
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.41
COG4172	534	ABC-type uncharacterized transport system, duplica	99.41
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.41
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.4
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.4
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.4
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.4
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.4
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.4
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.4
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.4
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.4
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.4
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.4
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.4
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.4
PRK06762	166	hypothetical protein; Provisional	99.39
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.39
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.39
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.39
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.38
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.38
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.38
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.38
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.38
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.38
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	99.37
PF07931	174	CPT: Chloramphenicol phosphotransferase-like prote	99.37
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.37
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.37
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.37
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	99.37
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.37
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	99.36
COG1123	539	ATPase components of various ABC-type transport sy	99.36
PLN03211	659	ABC transporter G-25; Provisional	99.36
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.36
PRK10938	490	putative molybdenum transport ATP-binding protein	99.36
PLN03130	1622	ABC transporter C family member; Provisional	99.35
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.35
PLN03232	1495	ABC transporter C family member; Provisional	99.34
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.34
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.34
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.33
PTZ00243	1560	ABC transporter; Provisional	99.33
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.33
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.33
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.33
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.33
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.33
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.32
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.31
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.31
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.31
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.31
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.31
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.31
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.31
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.3
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.3
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.3
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.29
PRK11147	635	ABC transporter ATPase component; Reviewed	99.29
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.28
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.28
PRK11147	635	ABC transporter ATPase component; Reviewed	99.28
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.28
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.27
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	99.26
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.26
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	99.25
PRK13409	590	putative ATPase RIL; Provisional	99.25
COG1123	539	ATPase components of various ABC-type transport sy	99.25
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.25
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.25
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.23
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.23
COG0488	530	Uup ATPase components of ABC transporters with dup	99.23
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.23
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.23
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.23
PRK10535	648	macrolide transporter ATP-binding /permease protei	99.22
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.22
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.22
PRK13409	590	putative ATPase RIL; Provisional	99.21
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.2
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.18
PLN03073	718	ABC transporter F family; Provisional	99.16
PLN03073	718	ABC transporter F family; Provisional	99.16
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.15
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	99.12
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	99.11
PLN03140	1470	ABC transporter G family member; Provisional	99.09
COG0645	170	Predicted kinase [General function prediction only	99.09
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.08
PLN03130	1622	ABC transporter C family member; Provisional	99.08
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.08
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	99.08
PLN03232	1495	ABC transporter C family member; Provisional	99.06
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.05
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	99.04
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.03
COG4172	534	ABC-type uncharacterized transport system, duplica	99.03
COG0488	530	Uup ATPase components of ABC transporters with dup	98.99
PLN03140	1470	ABC transporter G family member; Provisional	98.98
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	98.96
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	98.93
KOG0054	1381	consensus Multidrug resistance-associated protein/	98.92
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	98.91
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	98.9
PTZ00243	1560	ABC transporter; Provisional	98.88
PRK00131	175	aroK shikimate kinase; Reviewed	98.88
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	98.87
COG4178	604	ABC-type uncharacterized transport system, permeas	98.87
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	98.86
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	98.83
KOG0059	885	consensus Lipid exporter ABCA1 and related protein	98.82
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	98.8
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	98.8
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	98.8
PHA02530	300	pseT polynucleotide kinase; Provisional	98.8
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	98.79
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	98.78
PRK04182	180	cytidylate kinase; Provisional	98.74
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	98.74
KOG0054	1381	consensus Multidrug resistance-associated protein/	98.72
KOG0062	582	consensus ATPase component of ABC transporters wit	98.72
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	98.71
PRK14490	369	putative bifunctional molybdopterin-guanine dinucl	98.68
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	98.68
PRK13948	182	shikimate kinase; Provisional	98.67
PRK05057	172	aroK shikimate kinase I; Reviewed	98.66
KOG0060	659	consensus Long-chain acyl-CoA transporter, ABC sup	98.64
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	98.63
PRK08233	182	hypothetical protein; Provisional	98.61
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	98.59
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	98.57
PRK13949	169	shikimate kinase; Provisional	98.56
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	98.55
PRK13947	171	shikimate kinase; Provisional	98.55
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	98.54
KOG0927	614	consensus Predicted transporter (ABC superfamily)	98.52
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	98.52
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	98.51
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	98.5
PRK06761	282	hypothetical protein; Provisional	98.5
PRK14527	191	adenylate kinase; Provisional	98.49
PRK13946	184	shikimate kinase; Provisional	98.47
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	98.46
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	98.45
PRK00300	205	gmk guanylate kinase; Provisional	98.43
PRK14532	188	adenylate kinase; Provisional	98.42
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	98.42
cd04095	103	CysN_NoDQ_III TCysN_NoDQ_II: This subfamily repres	98.42
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	98.4
KOG0927	614	consensus Predicted transporter (ABC superfamily)	98.38
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	98.33
PRK03731	171	aroL shikimate kinase II; Reviewed	98.32
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	98.28
COG0283	222	Cmk Cytidylate kinase [Nucleotide transport and me	98.27
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	98.27
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	98.26
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	98.23
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	98.23
PRK01184	184	hypothetical protein; Provisional	98.23
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	98.23
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	98.22
PRK07261	171	topology modulation protein; Provisional	98.22
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	98.22
PRK08118	167	topology modulation protein; Reviewed	98.21
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	98.21
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	98.21
COG4639	168	Predicted kinase [General function prediction only	98.21
PRK03839	180	putative kinase; Provisional	98.2
PRK06547	172	hypothetical protein; Provisional	98.2
PRK00698	205	tmk thymidylate kinase; Validated	98.2
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	98.19
PRK06217	183	hypothetical protein; Validated	98.19
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	98.17
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	98.16
PLN02199	303	shikimate kinase	98.15
KOG0064	728	consensus Peroxisomal long-chain acyl-CoA transpor	98.12
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.11
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	98.1
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	98.09
PRK14021	542	bifunctional shikimate kinase/3-dehydroquinate syn	98.09
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	98.08
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	98.07
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	98.06
PRK14530	215	adenylate kinase; Provisional	98.06
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	98.06
cd03705	104	EF1_alpha_III Domain III of EF-1. Eukaryotic elong	98.04
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	98.03
PRK13808	333	adenylate kinase; Provisional	98.02
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	98.0
PRK10416	318	signal recognition particle-docking protein FtsY;	98.0
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	98.0
PRK12339	197	2-phosphoglycerate kinase; Provisional	97.99
PRK00625	173	shikimate kinase; Provisional	97.97
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	97.96
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	97.95
PRK08533	230	flagellar accessory protein FlaH; Reviewed	97.94
PRK00023	225	cmk cytidylate kinase; Provisional	97.93
COG3896	205	Chloramphenicol 3-O-phosphotransferase [Defense me	97.93
PRK05480	209	uridine/cytidine kinase; Provisional	97.92
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	97.9
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	97.88
PRK02496	184	adk adenylate kinase; Provisional	97.86
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.86
PRK14531	183	adenylate kinase; Provisional	97.86
cd04093	107	HBS1_C HBS1_C: this family represents the C-termin	97.85
PRK00635	1809	excinuclease ABC subunit A; Provisional	97.84
PLN02200	234	adenylate kinase family protein	97.84
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.83
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.82
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	97.81
smart00382	148	AAA ATPases associated with a variety of cellular	97.8
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	97.8
PRK06696	223	uridine kinase; Validated	97.79
PRK13974	212	thymidylate kinase; Provisional	97.78

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=100.00  E-value=5.6e-45  Score=301.07  Aligned_cols=187  Identities=60%  Similarity=0.986  Sum_probs=180.6

Q ss_pred             ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHH
Q 024315           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENI  160 (269)
Q Consensus        81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~  160 (269)
                      |+.|+...++..+|..+..++|.++|++|+|||||||+|++|++.|+..|..+++||||++|++|++++||+.++|.+++
T Consensus         2 ni~w~~~~v~~~~r~~~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eni   81 (197)
T COG0529           2 NIVWHPHSVTKQEREALKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIENI   81 (197)
T ss_pred             CccccccccCHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHHHHHH
Confidence            57788888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCcceeeccCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCcccccccccccc
Q 024315          161 RRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPY  240 (269)
Q Consensus       161 ~~l~~~a~~~~~~g~~~iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~~i~~~~  240 (269)
                      +++++++.+|.++|+++++++.+|++++|+.+|+++.+.+|++||+|+|+++|++|++|+||++++.|++++|+|++++|
T Consensus        82 RRvaevAkll~daG~iviva~ISP~r~~R~~aR~~~~~~~FiEVyV~~pl~vce~RDpKGLYkKAr~GeI~~fTGid~pY  161 (197)
T COG0529          82 RRVAEVAKLLADAGLIVIVAFISPYREDRQMARELLGEGEFIEVYVDTPLEVCERRDPKGLYKKARAGEIKNFTGIDSPY  161 (197)
T ss_pred             HHHHHHHHHHHHCCeEEEEEeeCccHHHHHHHHHHhCcCceEEEEeCCCHHHHHhcCchHHHHHHHcCCCCCCcCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCeEEEcCCCcCHHHHHH-HHhhc
Q 024315          241 EPPLNCEVGVHVWYRFELAETWR-ITKWL  268 (269)
Q Consensus       241 e~p~~~e~~id~~~~~~~~~~~~-i~~~~  268 (269)
                      |+|.+||++|||+ +.++++++. |.++|
T Consensus       162 E~P~~Pel~l~t~-~~~vee~v~~i~~~l  189 (197)
T COG0529         162 EAPENPELHLDTD-RNSVEECVEQILDLL  189 (197)
T ss_pred             CCCCCCeeEeccc-cCCHHHHHHHHHHHH
Confidence            9999999999994 777888887 88876

>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.3e-44  Score=290.11  Aligned_cols=190  Identities=79%  Similarity=1.265  Sum_probs=183.1

Q ss_pred             ccceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHH
Q 024315           79 STNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE  158 (269)
Q Consensus        79 ~~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~  158 (269)
                      ..|+.|+..++++.+|..|..|+|.+||++|.|||||||+|.+|.+.|...|.-++.+|||++|++|+++++|..++|.+
T Consensus         8 atNI~wh~~~v~k~eRq~l~~qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~DL~F~a~dR~E   87 (207)
T KOG0635|consen    8 ATNITWHESSVTKEERQKLLKQKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNKDLGFKAEDRNE   87 (207)
T ss_pred             ccceeeecCCccHHHHHHHhcCCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccccccCcchhhhhh
Confidence            47899999999999999999999999999999999999999999999998999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCcceeeccCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCcccccccccc
Q 024315          159 NIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDD  238 (269)
Q Consensus       159 ~~~~l~~~a~~~~~~g~~~iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~~i~~  238 (269)
                      +++++++++.+|.+.+++.+..+.+|++.+|+.+|+++.+.+|++||+|.|+++|++|+||+||+.+|.|++++|+|+++
T Consensus        88 NIRRigeVaKLFADag~iciaSlISPYR~dRdacRel~~~~~FiEvfmdvpl~vcE~RDPKGLYK~ARaGkIKgFTGIdd  167 (207)
T KOG0635|consen   88 NIRRIGEVAKLFADAGVICIASLISPYRKDRDACRELLPEGDFIEVFMDVPLEVCEARDPKGLYKLARAGKIKGFTGIDD  167 (207)
T ss_pred             hHHHHHHHHHHHhccceeeeehhcCchhccHHHHHHhccCCCeEEEEecCcHHHhhccCchhHHHHHhcccccccccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCeEEEcCCCcCHHHHHH-HHhhc
Q 024315          239 PYEPPLNCEVGVHVWYRFELAETWR-ITKWL  268 (269)
Q Consensus       239 ~~e~p~~~e~~id~~~~~~~~~~~~-i~~~~  268 (269)
                      +||+|.++|+++.+..-..++++++ |+.+|
T Consensus       168 PYEaP~~cEi~l~~~~~~sp~~mae~iv~YL  198 (207)
T KOG0635|consen  168 PYEAPLNCEIVLKSHESSSPEEMAEIIVSYL  198 (207)
T ss_pred             cccCCCCcEEEEccCCCCCHHHHHHHHHHHH
Confidence            9999999999999976667888888 77665

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=100.00  E-value=3.2e-34  Score=236.43  Aligned_cols=153  Identities=61%  Similarity=1.033  Sum_probs=134.5

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHHHHHHHHHHHHHhCCcceeec
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIAC  180 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~l~~~a~~~~~~g~~~iv~  180 (269)
                      +|.+|||+|.|||||||||+.|...|+..+..+++||||.+++.+..+++|+.++|.++++++.+++.++.+.|.+++++
T Consensus         1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A~ll~~~G~ivIva   80 (156)
T PF01583_consen    1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVAKLLADQGIIVIVA   80 (156)
T ss_dssp             S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEe
Confidence            58899999999999999999999999988999999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCccccccccccccCCCCCCCeEEEcC
Q 024315          181 LISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEVGVHVW  253 (269)
Q Consensus       181 ~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~~i~~~~e~p~~~e~~id~~  253 (269)
                      +.+++++.|+.+|+.+.+..|++||+++|+++|.+|++|++|++++.|++++|+|++.+||+|.+||++|||+
T Consensus        81 ~isp~~~~R~~~R~~~~~~~f~eVyv~~~~e~~~~RD~KglY~ka~~g~i~~~~Gvd~~ye~P~~pdl~idt~  153 (156)
T PF01583_consen   81 FISPYREDREWARELIPNERFIEVYVDCPLEVCRKRDPKGLYAKARAGEIKNFTGVDDPYEEPLNPDLVIDTD  153 (156)
T ss_dssp             ----SHHHHHHHHHHHHTTEEEEEEEES-HHHHHHHTTTSHHHHHHTTSSSSHTTTSS-----SS-SEEEETT
T ss_pred             eccCchHHHHHHHHhCCcCceEEEEeCCCHHHHHHhCchhHHHHhhCCCcCCccccccCCCCCCCCeEEEeCC
Confidence            9999999999999999987899999999999999999999999999999999999999999999999999996

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]

Probab=99.97  E-value=1.8e-30  Score=234.68  Aligned_cols=188  Identities=49%  Similarity=0.841  Sum_probs=172.1

Q ss_pred             ccceEEeeCceeeccCcce----ecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChh
Q 024315           79 STNILWHKNSVDKRDRQQL----LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE  154 (269)
Q Consensus        79 ~~~~~~~~~~v~~~~r~sl----~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~  154 (269)
                      ..|++++...+++.+|...    -...|+++|++|.||+||||+.-+|++.|...|-..+.+|||+++++|.+++||+++
T Consensus        23 stnvtyq~h~vsr~~r~~~vg~~~gfrgctvw~tglsgagkttis~ale~~l~~~gipcy~ldgdnirhgl~knlgfs~e  102 (627)
T KOG4238|consen   23 STNVTYQAHHVSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLDGDNIRHGLNKNLGFSPE  102 (627)
T ss_pred             ccceeeehhhcchhhccceeeccCCccceeEEeeccCCCCcceeehHHHHHHHhcCCcccccCcchhhhhhhhccCCCch
Confidence            4678888888888888753    456799999999999999999999999997777778999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHhCCcceeeccCChHHHHHHHHHHhCCCC--CccEEEEeCChhHHHhcChhhHHHHHhcCcccc
Q 024315          155 DRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEG--DFIEVFMDVPLQVCEARDPKGLYKLAREGKVKG  232 (269)
Q Consensus       155 ~~~~~~~~l~~~a~~~~~~g~~~iv~~~~~~~~~r~~ar~ll~~~--~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~  232 (269)
                      +|.++++++.+++.+|.++|++.+.++.+|+.++|.-+|.+-+..  +|+++++|+|+++|++|++|++|+++|.|++.+
T Consensus       103 dreenirriaevaklfadaglvcitsfispf~~dr~~arkihe~~~l~f~ev~v~a~l~vceqrd~k~lykkaragei~g  182 (627)
T KOG4238|consen  103 DREENIRRIAEVAKLFADAGLVCITSFISPFAKDRENARKIHESAGLPFFEVFVDAPLNVCEQRDVKGLYKKARAGEIKG  182 (627)
T ss_pred             hHHHHHHHHHHHHHHHhcCCceeeehhcChhhhhhhhhhhhhcccCCceEEEEecCchhhhhhcChHHHHhhhhcccccc
Confidence            999999999999999999999999999999999999999887654  789999999999999999999999999999999


Q ss_pred             ccccccccCCCCCCCeEEEcCCCcCHHHHHH-HHhh
Q 024315          233 FTGIDDPYEPPLNCEVGVHVWYRFELAETWR-ITKW  267 (269)
Q Consensus       233 ~~~i~~~~e~p~~~e~~id~~~~~~~~~~~~-i~~~  267 (269)
                      |++|++.||+|+++|++++|+ ..+.++|++ .++.
T Consensus       183 ftgids~ye~pe~~e~vl~t~-~~~v~~cvqqvve~  217 (627)
T KOG4238|consen  183 FTGIDSDYEKPETPERVLKTN-LSTVSDCVQQVVEL  217 (627)
T ss_pred             ccccccccCCCCChhHHhhcC-CchHHHHHHHHHHH
Confidence            999999999999999999994 778899887 5443

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.96  E-value=2.4e-28  Score=242.65  Aligned_cols=244  Identities=42%  Similarity=0.714  Sum_probs=217.5

Q ss_pred             CCCcccCCCcceeeeeeccccc--CccccccccceeeccccccccccchhhhcccccccccccccccccccceEEeeCce
Q 024315           12 TRPAICSPSLAEVDFRTSVKMS--GFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHKNSV   89 (269)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~f~~idr~~~~~~~~~~~~~~~~~gagmi~~~~~~~~~~~~~~~~~v   89 (269)
                      .|..|..++.+.|.|.+..|++  +|.+++.+|.|+++||-.+.           |+|+|+|..+.. ...++.|....+
T Consensus       380 ~p~~l~~g~~~~v~l~~~~pi~~e~~~~~~~lGRfilrdr~~~~-----------Tva~G~I~~~~~-~~~~~~~~~~~~  447 (632)
T PRK05506        380 AAKTLELNEIGRCNLSTDAPIAFDPYARNRTTGSFILIDRLTNA-----------TVGAGMIDFALR-RATNVHWQASDV  447 (632)
T ss_pred             CcceeCCCCEEEEEEEECCEEeeeeccccccCceEEEEeccCCc-----------eEEEEEECcccc-cccccccccccc
Confidence            3455889999999999999998  99999999999999998876           999999877544 567899999889


Q ss_pred             eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHHHHHHHHHHH
Q 024315           90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKL  169 (269)
Q Consensus        90 ~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~l~~~a~~  169 (269)
                      +...+.+...+++.+++++|.+||||||+++.|+..|...+.+.+++++|.++..+..+.+|+++++.++++++...+..
T Consensus       448 ~~~~~~~~~~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~~~~~~~~~~r~~~~~~l~~~a~~  527 (632)
T PRK05506        448 SREARAARKGQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLNRDLGFSDADRVENIRRVAEVARL  527 (632)
T ss_pred             CHHHHHHHhCCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            98888888888899999999999999999999999987556778999999999888877899999999999999888888


Q ss_pred             HHhCCcceeeccCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCccccccccccccCCCCCCCeE
Q 024315          170 FADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEVG  249 (269)
Q Consensus       170 ~~~~g~~~iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~~i~~~~e~p~~~e~~  249 (269)
                      +...|..+++++..+.+..|+.+++++.+..+..+|+++|.+.|.+|+.+++|...+.++++.+.+++.+|++|..++++
T Consensus       528 ~~~~G~~Vivda~~~~~~~R~~~r~l~~~~~~~~v~L~~~~e~~~~R~~r~L~~~~~~~~l~~l~~~r~~y~~P~~a~~~  607 (632)
T PRK05506        528 MADAGLIVLVSFISPFREERELARALHGEGEFVEVFVDTPLEVCEARDPKGLYAKARAGEIKNFTGIDSPYEAPENPELR  607 (632)
T ss_pred             HHhCCCEEEEECCCCCHHHHHHHHHhcccCCeEEEEECCCHHHHHhhCCcchhhhccccccccccccccCCCCCCCCeEE
Confidence            88999999999998888899999998876677779999999999999999999877788999999999999999989999


Q ss_pred             EEcCCCcCHHHHHH-HHhhc
Q 024315          250 VHVWYRFELAETWR-ITKWL  268 (269)
Q Consensus       250 id~~~~~~~~~~~~-i~~~~  268 (269)
                      ||++ +.+++++.. |.+||
T Consensus       608 Id~~-~~s~~e~v~~Ii~~l  626 (632)
T PRK05506        608 LDTT-GRSPEELAEQVLELL  626 (632)
T ss_pred             EeCC-CCCHHHHHHHHHHHH
Confidence            9995 667888776 88876

>PRK03846 adenylylsulfate kinase; Provisional

Probab=99.93  E-value=4.4e-25  Score=189.41  Aligned_cols=187  Identities=54%  Similarity=0.901  Sum_probs=164.4

Q ss_pred             ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHH
Q 024315           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENI  160 (269)
Q Consensus        81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~  160 (269)
                      +..|...+++..+|+....++|.+++|+|+|||||||+++.|++.+...+.+.+++++|++++.+...+++.++++.+++
T Consensus         3 ~~~~~~~~v~~~~~~~~~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~~~~~~~~~~~~~~   82 (198)
T PRK03846          3 NIVWHQHPVTKAQREQLHGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCSDLGFSDADRKENI   82 (198)
T ss_pred             CcccccCCCCHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhhcCCcCcccHHHHH
Confidence            36788888999999999999999999999999999999999999987777889999999998777667889999999999


Q ss_pred             HHHHHHHHHHHhCCcceeeccCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCcccccccccccc
Q 024315          161 RRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPY  240 (269)
Q Consensus       161 ~~l~~~a~~~~~~g~~~iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~~i~~~~  240 (269)
                      +++...+..+...|..++.++.++.+..|+.+++++...+++.||+++|.+.+.+|+++.++...+.+++..+...+.+|
T Consensus        83 ~~l~~~a~~~~~~G~~VI~~~~~~~~~~R~~~r~~l~~~~~i~V~L~~~~e~~~~R~~r~l~~~~~~~~~~~l~~~r~~Y  162 (198)
T PRK03846         83 RRVGEVAKLMVDAGLVVLTAFISPHRAERQMVRERLGEGEFIEVFVDTPLAICEARDPKGLYKKARAGEIRNFTGIDSVY  162 (198)
T ss_pred             HHHHHHHHHHhhCCCEEEEEeCCCCHHHHHHHHHHcccCCEEEEEEcCCHHHHHhcCchhHHHHhhcCCccCcccccccC
Confidence            99888888888889988888888888999999999987777679999999999999887788777677888888899899


Q ss_pred             CCCCCCCeEEEcCCCcCHHHHHH-HHhhc
Q 024315          241 EPPLNCEVGVHVWYRFELAETWR-ITKWL  268 (269)
Q Consensus       241 e~p~~~e~~id~~~~~~~~~~~~-i~~~~  268 (269)
                      ++|..++++|||+ ..+++++.. |.++|
T Consensus       163 ~~p~~ad~~Idt~-~~~~~~vv~~Il~~l  190 (198)
T PRK03846        163 EAPESPEIHLDTG-EQLVTNLVEQLLDYL  190 (198)
T ss_pred             CCCCCCCEEEECC-CCCHHHHHHHHHHHH
Confidence            9999999999995 677777775 87765

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=99.92  E-value=2e-24  Score=182.87  Aligned_cols=182  Identities=58%  Similarity=0.948  Sum_probs=161.1

Q ss_pred             eeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHHHHHH
Q 024315           85 HKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIG  164 (269)
Q Consensus        85 ~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~l~  164 (269)
                      ... +++.+|++...++|++++|+|++||||||+++.|.+.+...+.+.++++++++++.+..+.+|..+++.++++.+.
T Consensus         2 ~~~-~~~~~~~~~~~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~~~~~~~~~~~~~~~~~~~   80 (184)
T TIGR00455         2 HPA-ITKDERQALNGHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLNKDLGFSEEDRKENIRRIG   80 (184)
T ss_pred             CCc-CCHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhccccCCCHHHHHHHHHHHH
Confidence            344 7788888889999999999999999999999999999876666688999999998888888899999998998888


Q ss_pred             HHHHHHHhCCcceeeccCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCccccccccccccCCCC
Q 024315          165 EVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPL  244 (269)
Q Consensus       165 ~~a~~~~~~g~~~iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~~i~~~~e~p~  244 (269)
                      .++..+...|..+++++..+.+..|+.++.++...++..+|+++|.+.|..|+.+++|...+.+++..+.+.+..|++|.
T Consensus        81 ~~~~~~~~~G~~VI~d~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~~~~l~~~~~~y~~p~  160 (184)
T TIGR00455        81 EVAKLFVRNGIIVITSFISPYRADRQMVRELIEKGEFIEVFVDCPLEVCEQRDPKGLYKKARNGEIKGFTGIDSPYEAPE  160 (184)
T ss_pred             HHHHHHHcCCCEEEEecCCCCHHHHHHHHHhCcCCCeEEEEEeCCHHHHHHhCchhHHHHHhcCCccCcccccCCCCCCC
Confidence            88888889999999999988889999999998877788899999999999999888888777888888888999999999


Q ss_pred             CCCeEEEcCCCcCHHHHHH-HHhhc
Q 024315          245 NCEVGVHVWYRFELAETWR-ITKWL  268 (269)
Q Consensus       245 ~~e~~id~~~~~~~~~~~~-i~~~~  268 (269)
                      .++++|||+ ..+++++.. |.+||
T Consensus       161 ~adl~Idt~-~~~~~~~~~~i~~~l  184 (184)
T TIGR00455       161 NPEVVLDTD-QNDREECVGQIIEKL  184 (184)
T ss_pred             CCcEEEECC-CCCHHHHHHHHHHhC
Confidence            999999995 677877775 88876

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=99.87  E-value=2.8e-21  Score=158.84  Aligned_cols=149  Identities=66%  Similarity=1.115  Sum_probs=131.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHHHHHHHHHHHHHhCCcceeeccCC
Q 024315          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLIS  183 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~l~~~a~~~~~~g~~~iv~~~~  183 (269)
                      +++|+|++||||||+++.|++.+..++...+.++++.+++.+....++.++++.+.++.+...+..+...|..++++...
T Consensus         1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~~~~~~~~~~~~~~~~~~~~~a~~l~~~G~~VIid~~~   80 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKDLGFSREDREENIRRIAEVAKLLADAGLIVIAAFIS   80 (149)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCEEEEccCC
Confidence            47899999999999999999998756666788999999887777778888888887777777777777889889998888


Q ss_pred             hHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCccccccccccccCCCCCCCeEEEc
Q 024315          184 PYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEVGVHV  252 (269)
Q Consensus       184 ~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~~i~~~~e~p~~~e~~id~  252 (269)
                      .....|..++++++..++..+++++|+++|.+|+.+++|...+.|.+.++.|++.+||+|.++|+++|+
T Consensus        81 ~~~~~R~~~~~l~~~~~~~~i~l~~~~e~~~~R~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (149)
T cd02027          81 PYREDREAARKIIGGGDFLEVFVDTPLEVCEQRDPKGLYKKARAGEIKGFTGIDDPYEAPENPDLVLDT  149 (149)
T ss_pred             CCHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhCchhhHHHHhCCCCCCccccCCCCCCCCCCeeEecC
Confidence            777888888888876678889999999999999999999999999999999999999999999999885

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>PRK00889 adenylylsulfate kinase; Provisional

Probab=99.86  E-value=2.4e-20  Score=156.58  Aligned_cols=166  Identities=51%  Similarity=0.824  Sum_probs=137.5

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHHHHHHHHHHHHHhCCcceee
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIA  179 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~l~~~a~~~~~~g~~~iv  179 (269)
                      |+|++++|+|++||||||+++.|++.+...+...+++++|.+++.+...+++..+++..+++++..++..+...|..+++
T Consensus         2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~~~~~~~~~~~r~~~~~~~~~~a~~~~~~g~~vi~   81 (175)
T PRK00889          2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLSKGLGFSKEDRDTNIRRIGFVANLLTRHGVIVLV   81 (175)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHhCCCEEEE
Confidence            78999999999999999999999999975555577899998887666667888888888888887777777777887777


Q ss_pred             ccCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCccccccccccccCCCCCCCeEEEcCCCcCHH
Q 024315          180 CLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEVGVHVWYRFELA  259 (269)
Q Consensus       180 ~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~~i~~~~e~p~~~e~~id~~~~~~~~  259 (269)
                      +..+++...++.++.+..  ++..+|+++|.+.|.+|..+.++...+.+++..+...+.+|++|..+++.|+++ ..+++
T Consensus        82 ~~~~~~~~~~~~l~~~~~--~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~i~~~~~~~~~~~~p~~ad~~i~~~-~~~~~  158 (175)
T PRK00889         82 SAISPYRETREEVRANIG--NFLEVFVDAPLEVCEQRDVKGLYAKARAGEIKHFTGIDDPYEPPLNPEVECRTD-LESLE  158 (175)
T ss_pred             ecCCCCHHHHHHHHhhcC--CeEEEEEcCCHHHHHHhCcccHHHHHHcCCCCCCcccCCCCCCCCCCcEEEECC-CCCHH
Confidence            777777777777777654  466799999999999999888887777778888888889999998899999996 56677


Q ss_pred             HHHH-HHhhc
Q 024315          260 ETWR-ITKWL  268 (269)
Q Consensus       260 ~~~~-i~~~~  268 (269)
                      ++.. |.+||
T Consensus       159 ~~~~~i~~~l  168 (175)
T PRK00889        159 ESVDKVLQKL  168 (175)
T ss_pred             HHHHHHHHHH
Confidence            7776 88876

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=99.82  E-value=2.7e-19  Score=175.39  Aligned_cols=223  Identities=40%  Similarity=0.590  Sum_probs=167.2

Q ss_pred             ccccceeeccccccccccchhhhcccccccccccccccccccceEEeeCceeeccCc--ceecCCCeEEEEEcCCCChHH
Q 024315           39 SRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHKNSVDKRDRQ--QLLQQKGCVIWITGLSGSGKS  116 (269)
Q Consensus        39 ~~~~~f~~idr~~~~~~~~~~~~~~~~~gagmi~~~~~~~~~~~~~~~~~v~~~~r~--sl~~~~g~~i~l~G~sGsGKS  116 (269)
                      ..-+.+...+..++..      +....+|+.|......+....-.|....|...-+.  .-..++|.+|+|+|++|||||
T Consensus       333 ~~~~~~~~~~~cph~~------~~~~~sgt~ir~~l~~G~~pP~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKS  406 (568)
T PRK05537        333 QDKAQYVPVDEVPQGA------TVLTISGTELRRRLREGLEIPEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKS  406 (568)
T ss_pred             cCCCeEEecCcCCCCc------ceeccCHHHHHHHHHCCCCCChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHH
Confidence            4444555555444431      22346666655443322211112222333322111  234578999999999999999


Q ss_pred             HHHHHHHHhhcc-CCccEEEECCeecCcccccCCCCChhhHHHHHHHHHHHHHHHHhCCcceeeccCChHHHHHHHHHHh
Q 024315          117 TLACALSQALHW-RGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSM  195 (269)
Q Consensus       117 Tla~~L~~~l~~-~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~l~~~a~~~~~~g~~~iv~~~~~~~~~r~~ar~l  195 (269)
                      |+++.|++.|.. .+...+++|+|.+++.+..+.+|+.+++..+++++...+......|..++++..+++...|+..+++
T Consensus       407 Tia~~La~~L~~~~g~~~~~lD~D~vr~~l~ge~~f~~~er~~~~~~l~~~a~~v~~~Gg~vI~~~~~p~~~~R~~nr~l  486 (568)
T PRK05537        407 TIAKALMVKLMEMRGRPVTLLDGDVVRKHLSSELGFSKEDRDLNILRIGFVASEITKNGGIAICAPIAPYRATRREVREM  486 (568)
T ss_pred             HHHHHHHHHhhhccCceEEEeCCcHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCCchHHHHHHHHHH
Confidence            999999999975 4555789999999888888889999999888888877777777889999998889999888888888


Q ss_pred             CCC-CCccEEEEeCChhHHHhcChhhHHHHHhcCccccccccccccCCCCCCCeEEEcCCCcCHHHHHH-HHhhc
Q 024315          196 LPE-GDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEVGVHVWYRFELAETWR-ITKWL  268 (269)
Q Consensus       196 l~~-~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~~i~~~~e~p~~~e~~id~~~~~~~~~~~~-i~~~~  268 (269)
                      +.. ..++.||+++|++.|.+|++++++...+.+.+..+.+.+.+|++|.+++++|||+ ..+++++.. |.++|
T Consensus       487 lk~~g~fivV~L~~p~e~l~~R~rr~Ll~~~~~~~i~~l~~~R~~yy~p~~Adl~IDt~-~~s~~eiv~~Il~~L  560 (568)
T PRK05537        487 IEAYGGFIEVHVATPLEVCEQRDRKGLYAKAREGKIKGFTGISDPYEPPANPELVIDTT-NVTPDECAHKILLYL  560 (568)
T ss_pred             HhhcCCEEEEEEcCCHHHHHHhccccccccchhchhhccccccccccCCCCCcEEEECC-CCCHHHHHHHHHHHH
Confidence            876 3466799999999999999988887666778888999999999999999999995 677888877 77665

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.74  E-value=1.6e-17  Score=152.41  Aligned_cols=142  Identities=20%  Similarity=0.224  Sum_probs=104.1

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--ccccCCCCChhh--
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--GLNRDLSFKAED--  155 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--~l~~~~g~~~~~--  155 (269)
                      .|+...++.+.+.+..++++.+|++++|+||||||||||+++|+|+. .+.+|.|+++|.++..  ...+++++..|.  
T Consensus         7 ~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe-~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yA   85 (338)
T COG3839           7 KNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLE-EPTSGEILIDGRDVTDLPPEKRGIAMVFQNYA   85 (338)
T ss_pred             eeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEECCCCChhHCCEEEEeCCcc
Confidence            46666676655788899999999999999999999999999999977 6779999999998864  111122222221  


Q ss_pred             ---------------------HHHHHHHHHHHHHHHHhCCcc-eeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhH
Q 024315          156 ---------------------RVENIRRIGEVAKLFADAGVI-CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV  212 (269)
Q Consensus       156 ---------------------~~~~~~~l~~~a~~~~~~g~~-~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~  212 (269)
                                           +.+..+++.+++..+.-..+. -....++++++|| +.+|+++.+|++  +++|||++.
T Consensus        86 LyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v--~L~DEPlSn  163 (338)
T COG3839          86 LYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKV--FLLDEPLSN  163 (338)
T ss_pred             ccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCE--EEecCchhH
Confidence                                 123344555555554333322 2355678888888 799999999998  899999999


Q ss_pred             HHhcChhhHHHH
Q 024315          213 CEARDPKGLYKL  224 (269)
Q Consensus       213 l~~R~~k~l~~~  224 (269)
                      ++.+.+..+...
T Consensus       164 LDa~lR~~mr~e  175 (338)
T COG3839         164 LDAKLRVLMRSE  175 (338)
T ss_pred             hhHHHHHHHHHH
Confidence            999988765433

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.73  E-value=1e-17  Score=146.53  Aligned_cols=142  Identities=20%  Similarity=0.277  Sum_probs=107.5

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhh
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAED  155 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~  155 (269)
                      .|+++.+....+.++++|++++|++++++|||||||||+++.+.+++ .+.+|.|+++|.+++.    .|++.+||.-|.
T Consensus         5 ~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLi-ept~G~I~i~g~~i~~~d~~~LRr~IGYviQq   83 (309)
T COG1125           5 ENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLI-EPTSGEILIDGEDISDLDPVELRRKIGYVIQQ   83 (309)
T ss_pred             eeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhccc-CCCCceEEECCeecccCCHHHHHHhhhhhhhh
Confidence            57888888899999999999999999999999999999999999988 6789999999999874    456666665542


Q ss_pred             H--------HHHHHHH-----------H-HHHHHHHhCCcc------eeeccCChHHHHH-HHHHHhCCCCCccEEEEeC
Q 024315          156 R--------VENIRRI-----------G-EVAKLFADAGVI------CIACLISPYRKDR-DACRSMLPEGDFIEVFMDV  208 (269)
Q Consensus       156 ~--------~~~~~~l-----------~-~~a~~~~~~g~~------~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~  208 (269)
                      .        .+++..+           . ..-.++...|+.      -....+|++++|| -.+|+++.+|++  ++||+
T Consensus        84 igLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~i--lLMDE  161 (309)
T COG1125          84 IGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPI--LLMDE  161 (309)
T ss_pred             cccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCe--EeecC
Confidence            2        1111111           1 112223333332      2355567888888 599999999999  99999


Q ss_pred             ChhHHHhcChhhHHHH
Q 024315          209 PLQVCEARDPKGLYKL  224 (269)
Q Consensus       209 p~~~l~~R~~k~l~~~  224 (269)
                      |+..+++=.++.+...
T Consensus       162 PFgALDpI~R~~lQ~e  177 (309)
T COG1125         162 PFGALDPITRKQLQEE  177 (309)
T ss_pred             CccccChhhHHHHHHH
Confidence            9999999888776543

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.73  E-value=1.1e-17  Score=154.17  Aligned_cols=140  Identities=21%  Similarity=0.245  Sum_probs=102.4

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--ccccCCCCChhhHH
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--GLNRDLSFKAEDRV  157 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--~l~~~~g~~~~~~~  157 (269)
                      .++...++.+.+.+++++.+++||++.|+|||||||||++++|+|+. .|.+|.|.++|.++..  .-.+++++..|+.+
T Consensus         9 ~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe-~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YA   87 (352)
T COG3842           9 RNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFE-QPSSGEILLDGEDITDVPPEKRPIGMVFQSYA   87 (352)
T ss_pred             EeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEECCCCChhhcccceeecCcc
Confidence            46777788899999999999999999999999999999999999977 6789999999999863  11222333333221


Q ss_pred             --------H----------------HHHHHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeC
Q 024315          158 --------E----------------NIRRIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDV  208 (269)
Q Consensus       158 --------~----------------~~~~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~  208 (269)
                              +                ..+++.+   .+...++..    ....+++++++| +.+|+++.+|++  +++||
T Consensus        88 LFPHltV~~NVafGLk~~~~~~~~~i~~rv~e---~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~v--LLLDE  162 (352)
T COG3842          88 LFPHMTVEENVAFGLKVRKKLKKAEIKARVEE---ALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKV--LLLDE  162 (352)
T ss_pred             cCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHH---HHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcch--hhhcC
Confidence                    1                1112222   222222222    244557778888 699999999999  89999


Q ss_pred             ChhHHHhcChhhHHHHH
Q 024315          209 PLQVCEARDPKGLYKLA  225 (269)
Q Consensus       209 p~~~l~~R~~k~l~~~~  225 (269)
                      |+..++.+.++.+...+
T Consensus       163 PlSaLD~kLR~~mr~El  179 (352)
T COG3842         163 PLSALDAKLREQMRKEL  179 (352)
T ss_pred             cccchhHHHHHHHHHHH
Confidence            99999999987755433

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.72  E-value=8.6e-18  Score=148.91  Aligned_cols=144  Identities=21%  Similarity=0.216  Sum_probs=104.9

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhh
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAED  155 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~  155 (269)
                      +++++.+......++.||++++|++++|+||||||||||+|+|++.+. +.+|.|+++|.++..    .+.+.++|.+|.
T Consensus         6 ~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~-p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~   84 (258)
T COG1120           6 ENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK-PKSGEVLLDGKDIASLSPKELAKKLAYVPQS   84 (258)
T ss_pred             EEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC-CCCCEEEECCCchhhcCHHHHhhhEEEeccC
Confidence            578888888889999999999999999999999999999999999884 779999999998763    333333333332


Q ss_pred             HH-------------------HHHH-----HHHHHHHHHHhCCcce----eeccCChHHHHHH-HHHHhCCCCCccEEEE
Q 024315          156 RV-------------------ENIR-----RIGEVAKLFADAGVIC----IACLISPYRKDRD-ACRSMLPEGDFIEVFM  206 (269)
Q Consensus       156 ~~-------------------~~~~-----~l~~~a~~~~~~g~~~----iv~~~~~~~~~r~-~ar~ll~~~~~~~i~l  206 (269)
                      ..                   .++.     -...+...+...++..    .+..+|++++||. ++++++.++++  +++
T Consensus        85 ~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~i--LLL  162 (258)
T COG1120          85 PSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPI--LLL  162 (258)
T ss_pred             CCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCE--EEe
Confidence            10                   0000     0001222233334422    2556678888885 88888999999  999


Q ss_pred             eCChhHHHhcChhhHHHHHh
Q 024315          207 DVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       207 d~p~~~l~~R~~k~l~~~~r  226 (269)
                      |||+..++-+.+-.+.+..+
T Consensus       163 DEPTs~LDi~~Q~evl~ll~  182 (258)
T COG1120         163 DEPTSHLDIAHQIEVLELLR  182 (258)
T ss_pred             CCCccccCHHHHHHHHHHHH
Confidence            99999999998877655544

>PRK05541 adenylylsulfate kinase; Provisional

Probab=99.72  E-value=3.9e-16  Score=131.11  Aligned_cols=166  Identities=34%  Similarity=0.545  Sum_probs=122.4

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHHHHHHHHHHHHHhCCccee
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICI  178 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~l~~~a~~~~~~g~~~i  178 (269)
                      .++|.+++|+|++||||||+++.|.+.+...+.+.++++++.++..+. ..++......+...+...+...+...|..++
T Consensus         4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~g~~VI   82 (176)
T PRK05541          4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREILG-HYGYDKQSRIEMALKRAKLAKFLADQGMIVI   82 (176)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhhcC-CCCCCHHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence            478999999999999999999999999976777889999988875332 2345444444444444445555556777777


Q ss_pred             eccCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCccccccccccccCCCCCCCeEEEcCCCcCH
Q 024315          179 ACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEVGVHVWYRFEL  258 (269)
Q Consensus       179 v~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~~i~~~~e~p~~~e~~id~~~~~~~  258 (269)
                      ++..+..+..+...+.++..  +..+|+++|.+.+.+|..++++.....+.+..+.+.+.+++.+. ++++|+|+...++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~--~~~v~l~~~~e~~~~R~~~~l~~~~~~~~~~~~~~~~~~~~~~~-Ad~vI~~~~~~~~  159 (176)
T PRK05541         83 VTTISMFDEIYAYNRKHLPN--YFEVYLKCDMEELIRRDQKGLYTKALKGEIKNVVGVDIPFDEPK-ADLVIDNSCRTSL  159 (176)
T ss_pred             EEeCCcHHHHHHHHHhhcCC--eEEEEEeCCHHHHHHhchhhHHHHHHcCcccccccCCCcccCCC-CCEEEeCCCCCCH
Confidence            77776655566666766643  45689999999999999888887777778888777777777665 5999999643577


Q ss_pred             HHHHH-HHhhc
Q 024315          259 AETWR-ITKWL  268 (269)
Q Consensus       259 ~~~~~-i~~~~  268 (269)
                      +++.. |.+.|
T Consensus       160 ~~~v~~i~~~l  170 (176)
T PRK05541        160 DEKVDLILNKL  170 (176)
T ss_pred             HHHHHHHHHHH
Confidence            77665 65543

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.72  E-value=2.7e-17  Score=140.92  Aligned_cols=141  Identities=21%  Similarity=0.230  Sum_probs=106.3

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-----ccccCCCCChh
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----GLNRDLSFKAE  154 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-----~l~~~~g~~~~  154 (269)
                      .|+...++.....+.+++++++|++++|+||||||||||+++|.++- .+.+|.|.++|.++..     .+++.+|+..|
T Consensus         6 ~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE-~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ   84 (240)
T COG1126           6 KNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLE-EPDSGSITVDGEDVGDKKDILKLRRKVGMVFQ   84 (240)
T ss_pred             EeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCc-CCCCceEEECCEeccchhhHHHHHHhcCeecc
Confidence            56777888999999999999999999999999999999999999955 6779999999976642     24455565555


Q ss_pred             hHH--------HHHH-------------HHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeC
Q 024315          155 DRV--------ENIR-------------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDV  208 (269)
Q Consensus       155 ~~~--------~~~~-------------~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~  208 (269)
                      ...        +++.             .......++...|+..    +...+|++++|| +++|+++-+|++  +++|+
T Consensus        85 ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~v--mLFDE  162 (240)
T COG1126          85 QFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKV--MLFDE  162 (240)
T ss_pred             cccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCE--EeecC
Confidence            331        1110             0011223445555533    456678888888 699999999999  99999


Q ss_pred             ChhHHHhcChhhHHH
Q 024315          209 PLQVCEARDPKGLYK  223 (269)
Q Consensus       209 p~~~l~~R~~k~l~~  223 (269)
                      |++.|++.......+
T Consensus       163 PTSALDPElv~EVL~  177 (240)
T COG1126         163 PTSALDPELVGEVLD  177 (240)
T ss_pred             CcccCCHHHHHHHHH
Confidence            999999998877443

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.72  E-value=2e-17  Score=145.97  Aligned_cols=144  Identities=21%  Similarity=0.264  Sum_probs=106.3

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCccc-ccCCCCChhhH--
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-NRDLSFKAEDR--  156 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l-~~~~g~~~~~~--  156 (269)
                      .|+.+.+....+.+++++.+.+|++++|+||||||||||+|++.|++ .|.+|.|.+.|.+..... +..++|.+|..  
T Consensus         8 ~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll-~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~   86 (254)
T COG1121           8 ENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLL-KPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSV   86 (254)
T ss_pred             eeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-cCCcceEEEccccccccccCCeEEEcCccccc
Confidence            56777776446889999999999999999999999999999999988 467999999998754322 12345555522  


Q ss_pred             -----------H--------HHHHHH-----HHHHHHHHhCCccee----eccCChHHHHHH-HHHHhCCCCCccEEEEe
Q 024315          157 -----------V--------ENIRRI-----GEVAKLFADAGVICI----ACLISPYRKDRD-ACRSMLPEGDFIEVFMD  207 (269)
Q Consensus       157 -----------~--------~~~~~l-----~~~a~~~~~~g~~~i----v~~~~~~~~~r~-~ar~ll~~~~~~~i~ld  207 (269)
                                 .        .++++.     ..+...+...|...+    +..+|++++||. +||+++.++++  +++|
T Consensus        87 d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~l--llLD  164 (254)
T COG1121          87 DRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDL--LLLD  164 (254)
T ss_pred             CCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCE--EEec
Confidence                       0        011110     223344455555432    345678888884 99999999999  9999


Q ss_pred             CChhHHHhcChhhHHHHHh
Q 024315          208 VPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       208 ~p~~~l~~R~~k~l~~~~r  226 (269)
                      ||+..+|....+.+|+.+.
T Consensus       165 EP~~gvD~~~~~~i~~lL~  183 (254)
T COG1121         165 EPFTGVDVAGQKEIYDLLK  183 (254)
T ss_pred             CCcccCCHHHHHHHHHHHH
Confidence            9999999999999886654

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.72  E-value=4.7e-17  Score=142.35  Aligned_cols=141  Identities=20%  Similarity=0.246  Sum_probs=100.8

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHH--
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRV--  157 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~--  157 (269)
                      .++...+..+.+.+++++.+.+||++.|+||||||||||++.|+|+. .+.+|.|.++|..+. +-.++.+|..|+..  
T Consensus         7 ~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~-~p~~G~V~~~g~~v~-~p~~~~~~vFQ~~~Ll   84 (248)
T COG1116           7 EGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLE-KPTSGEVLLDGRPVT-GPGPDIGYVFQEDALL   84 (248)
T ss_pred             EeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCcccC-CCCCCEEEEeccCccc
Confidence            35666676788999999999999999999999999999999999987 577999999998772 22222233222110  


Q ss_pred             ------HHH------------HHHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHH
Q 024315          158 ------ENI------------RRIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCE  214 (269)
Q Consensus       158 ------~~~------------~~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~  214 (269)
                            +++            .+.......+...|+..    .....|++.+|| .++|+++.++++  +++|||+..++
T Consensus        85 PW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~l--LLlDEPFgALD  162 (248)
T COG1116          85 PWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKL--LLLDEPFGALD  162 (248)
T ss_pred             chhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCE--EEEcCCcchhh
Confidence                  000            00012223334444432    344567777777 699999999999  99999999999


Q ss_pred             hcChhhHHHH
Q 024315          215 ARDPKGLYKL  224 (269)
Q Consensus       215 ~R~~k~l~~~  224 (269)
                      .-.+..+++.
T Consensus       163 alTR~~lq~~  172 (248)
T COG1116         163 ALTREELQDE  172 (248)
T ss_pred             HHHHHHHHHH
Confidence            9888776544

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.69  E-value=1e-16  Score=156.88  Aligned_cols=163  Identities=20%  Similarity=0.211  Sum_probs=113.7

Q ss_pred             ceeeccccccccccchhhhcccccccccccccccccccceEEeeCceeeccCc--------ceecCCCeEEEEEcCCCCh
Q 024315           43 SLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHKNSVDKRDRQ--------QLLQQKGCVIWITGLSGSG  114 (269)
Q Consensus        43 ~f~~idr~~~~~~~~~~~~~~~~~gagmi~~~~~~~~~~~~~~~~~v~~~~r~--------sl~~~~g~~i~l~G~sGsG  114 (269)
                      =|+++||.|.+...|.            ..+.  .....++|+++.|+|+.|.        +|++++|++++|+||||||
T Consensus       441 vFel~dr~P~i~~~G~------------~~p~--~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsG  506 (716)
T KOG0058|consen  441 VFELMDRKPRIPLTGT------------LAPD--HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSG  506 (716)
T ss_pred             HHHHhccCCCCCCCCc------------cccc--cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCC
Confidence            5999999999853332            2211  1235677888888877664        7999999999999999999


Q ss_pred             HHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhH-------HHH------------HHHHHHHH--HH
Q 024315          115 KSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDR-------VEN------------IRRIGEVA--KL  169 (269)
Q Consensus       115 KSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~-------~~~------------~~~l~~~a--~~  169 (269)
                      |||++..|++++ +|.+|.|.+||.+++.    .+++.+++..||.       +++            +....+.+  +.
T Consensus       507 KSTiasLL~rfY-~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~  585 (716)
T KOG0058|consen  507 KSTIASLLLRFY-DPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHE  585 (716)
T ss_pred             HHHHHHHHHHhc-CCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHH
Confidence            999999999988 6889999999999874    4555555555432       111            22222221  11


Q ss_pred             HH---hCCccee----eccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHH
Q 024315          170 FA---DAGVICI----ACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLY  222 (269)
Q Consensus       170 ~~---~~g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~  222 (269)
                      |.   ..|....    ....+++++|| ++||+++.+|.+  +++||-+..+|.....-..
T Consensus       586 FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~V--LILDEATSALDaeSE~lVq  644 (716)
T KOG0058|consen  586 FITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRV--LILDEATSALDAESEYLVQ  644 (716)
T ss_pred             HHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCE--EEEechhhhcchhhHHHHH
Confidence            11   1122222    23457777877 799999999999  8999999999877654443

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.68  E-value=1.5e-16  Score=142.44  Aligned_cols=143  Identities=22%  Similarity=0.249  Sum_probs=104.1

Q ss_pred             ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCe---ecCc--ccccCCCCChhh
Q 024315           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD---NCRH--GLNRDLSFKAED  155 (269)
Q Consensus        81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~---~~~~--~l~~~~g~~~~~  155 (269)
                      +++...+.+.+.+++++.++.|++++|.||||||||||+++|+|+. .|..|.|.|+|.   +..+  .-.+.+||..|+
T Consensus         7 ~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe-~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~   85 (345)
T COG1118           7 NVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLE-TPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQH   85 (345)
T ss_pred             hhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcC-CCCCceEEECCEeccchhccchhhcceeEEEec
Confidence            4555566788888999999999999999999999999999999987 577999999998   4332  111233444433


Q ss_pred             HH-------------------------HHHHHHHHHHHHHHhCCcce-eeccCChHHHHH-HHHHHhCCCCCccEEEEeC
Q 024315          156 RV-------------------------ENIRRIGEVAKLFADAGVIC-IACLISPYRKDR-DACRSMLPEGDFIEVFMDV  208 (269)
Q Consensus       156 ~~-------------------------~~~~~l~~~a~~~~~~g~~~-iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~  208 (269)
                      .+                         +...++.+...+++-.++.. ....+++++++| +.+|+++.+|++  +++||
T Consensus        86 YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~v--LLLDE  163 (345)
T COG1118          86 YALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKV--LLLDE  163 (345)
T ss_pred             hhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCe--EeecC
Confidence            21                         22223333333444333322 355567788887 689999999999  99999


Q ss_pred             ChhHHHhcChhhHHHHHh
Q 024315          209 PLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       209 p~~~l~~R~~k~l~~~~r  226 (269)
                      |+..++...++.+.+.++
T Consensus       164 Pf~ALDa~vr~~lr~wLr  181 (345)
T COG1118         164 PFGALDAKVRKELRRWLR  181 (345)
T ss_pred             CchhhhHHHHHHHHHHHH
Confidence            999999999998876665

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.64  E-value=9.4e-16  Score=129.10  Aligned_cols=142  Identities=18%  Similarity=0.224  Sum_probs=104.7

Q ss_pred             cceEEeeC-ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-------ccccCCCC
Q 024315           80 TNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-------GLNRDLSF  151 (269)
Q Consensus        80 ~~~~~~~~-~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-------~l~~~~g~  151 (269)
                      ++++..+. +..+.+++++.+++|+++.++|||||||||++|.|.+.. .|.+|.++++|.++..       .+++.+|+
T Consensus         5 ~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e-~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGv   83 (223)
T COG2884           5 ENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEE-RPTRGKILVNGHDLSRLKGREIPFLRRQIGV   83 (223)
T ss_pred             hhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhh-cCCCceEEECCeecccccccccchhhheeee
Confidence            44555553 333778899999999999999999999999999999987 5779999999999863       45666776


Q ss_pred             ChhhHH--------HHHHH------------HHHHHHHHHhCCc----ceeeccCChHHHHH-HHHHHhCCCCCccEEEE
Q 024315          152 KAEDRV--------ENIRR------------IGEVAKLFADAGV----ICIACLISPYRKDR-DACRSMLPEGDFIEVFM  206 (269)
Q Consensus       152 ~~~~~~--------~~~~~------------l~~~a~~~~~~g~----~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~l  206 (269)
                      ..|+..        +++..            -..+...+..-|+    ......+|++++|| .++|+++.+|++  ++-
T Consensus        84 VFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~v--LlA  161 (223)
T COG2884          84 VFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAV--LLA  161 (223)
T ss_pred             EeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCe--Eee
Confidence            666542        11000            0123333433444    23455668888888 699999999998  899


Q ss_pred             eCChhHHHhcChhhHHHH
Q 024315          207 DVPLQVCEARDPKGLYKL  224 (269)
Q Consensus       207 d~p~~~l~~R~~k~l~~~  224 (269)
                      |||+..+++....++...
T Consensus       162 DEPTGNLDp~~s~~im~l  179 (223)
T COG2884         162 DEPTGNLDPDLSWEIMRL  179 (223)
T ss_pred             cCCCCCCChHHHHHHHHH
Confidence            999999999998885544

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.64  E-value=2.7e-15  Score=130.64  Aligned_cols=136  Identities=23%  Similarity=0.304  Sum_probs=99.0

Q ss_pred             eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-------cc-ccCCCCChhhH----
Q 024315           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-------GL-NRDLSFKAEDR----  156 (269)
Q Consensus        89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-------~l-~~~~g~~~~~~----  156 (269)
                      +.+...++|.+++|++++|+||||||||||++.|.++. .|.+|.+.++|.++..       .+ +..+||..|..    
T Consensus        18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld-~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~   96 (226)
T COG1136          18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLD-KPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLP   96 (226)
T ss_pred             eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccc-CCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCC
Confidence            67788999999999999999999999999999999977 4689999999977752       11 22334433321    


Q ss_pred             ----HHHHH------------HHHHHHHHHHhCCcc-----eeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHH
Q 024315          157 ----VENIR------------RIGEVAKLFADAGVI-----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCE  214 (269)
Q Consensus       157 ----~~~~~------------~l~~~a~~~~~~g~~-----~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~  214 (269)
                          .+++.            .......++...|+.     ..+..+|++++|| .++|+++.+|++  |+.|||+..++
T Consensus        97 ~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~i--ilADEPTgnLD  174 (226)
T COG1136          97 DLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKI--ILADEPTGNLD  174 (226)
T ss_pred             CCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCe--EEeeCccccCC
Confidence                12211            111222333444553     2355678888888 699999999999  99999999999


Q ss_pred             hcChhhHHHHHhc
Q 024315          215 ARDPKGLYKLARE  227 (269)
Q Consensus       215 ~R~~k~l~~~~r~  227 (269)
                      ....+.+.+..++
T Consensus       175 ~~t~~~V~~ll~~  187 (226)
T COG1136         175 SKTAKEVLELLRE  187 (226)
T ss_pred             hHHHHHHHHHHHH
Confidence            9998886655543

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.63  E-value=8.5e-16  Score=132.89  Aligned_cols=144  Identities=18%  Similarity=0.251  Sum_probs=104.8

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-----ccccCCCCChh
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----GLNRDLSFKAE  154 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-----~l~~~~g~~~~  154 (269)
                      .+++..++...+...+++.+++|+++.|+|+||+|||||+++|++.++ +.+|.|.++|.++..     ..+..++|.+|
T Consensus         7 ~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~-~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPe   85 (237)
T COG0410           7 ENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR-PRSGRIIFDGEDITGLPPHERARLGIAYVPE   85 (237)
T ss_pred             EeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeeEEECCeecCCCCHHHHHhCCeEeCcc
Confidence            467777888999999999999999999999999999999999999884 558999999999874     23445566666


Q ss_pred             hHH--------HHHH-------------H-HHHHHHHHHhCC--cceeeccCChH-HHHHHHHHHhCCCCCccEEEEeCC
Q 024315          155 DRV--------ENIR-------------R-IGEVAKLFADAG--VICIACLISPY-RKDRDACRSMLPEGDFIEVFMDVP  209 (269)
Q Consensus       155 ~~~--------~~~~-------------~-l~~~a~~~~~~g--~~~iv~~~~~~-~~~r~~ar~ll~~~~~~~i~ld~p  209 (269)
                      .|.        +++.             . +.++..+|....  ........|++ +++..++|+++.+|++  +++|||
T Consensus        86 gR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~Pkl--LLLDEP  163 (237)
T COG0410          86 GRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKL--LLLDEP  163 (237)
T ss_pred             cccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCE--EEecCC
Confidence            542        1111             0 112222222110  01122233444 5556899999999999  999999


Q ss_pred             hhHHHhcChhhHHHHHh
Q 024315          210 LQVCEARDPKGLYKLAR  226 (269)
Q Consensus       210 ~~~l~~R~~k~l~~~~r  226 (269)
                      .+.+.+...+.+++.++
T Consensus       164 s~GLaP~iv~~I~~~i~  180 (237)
T COG0410         164 SEGLAPKIVEEIFEAIK  180 (237)
T ss_pred             ccCcCHHHHHHHHHHHH
Confidence            99999999988775544

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.63  E-value=3.7e-15  Score=125.81  Aligned_cols=133  Identities=22%  Similarity=0.232  Sum_probs=96.2

Q ss_pred             ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHH
Q 024315           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENI  160 (269)
Q Consensus        81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~  160 (269)
                      ++.+.+......+..++.+++|++++|+|+||||||||++.|++.+ .+.+|.|.++|.++.       .+....+...+
T Consensus         4 ~l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~-~~~~G~v~~~g~~~~-------~~~~~~~~~~i   75 (180)
T cd03214           4 NLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLL-KPSSGEILLDGKDLA-------SLSPKELARKI   75 (180)
T ss_pred             EEEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEECC-------cCCHHHHHHHH
Confidence            4555554455678889999999999999999999999999999987 467899999998875       23332222223


Q ss_pred             HHHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315          161 RRIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       161 ~~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      ..+.+   .+...++..    .+...++++++| ..+++++.++++  +++|+|+..++....+.+++.++
T Consensus        76 ~~~~q---~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~l--lllDEP~~~LD~~~~~~~~~~l~  141 (180)
T cd03214          76 AYVPQ---ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPI--LLLDEPTSHLDIAHQIELLELLR  141 (180)
T ss_pred             hHHHH---HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCE--EEEeCCccCCCHHHHHHHHHHHH
Confidence            33322   333333322    233456666666 689999999999  99999999999888887776554

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.63  E-value=1.6e-15  Score=131.61  Aligned_cols=144  Identities=19%  Similarity=0.283  Sum_probs=101.6

Q ss_pred             cceEEee-CceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-------ccccCCCC
Q 024315           80 TNILWHK-NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-------GLNRDLSF  151 (269)
Q Consensus        80 ~~~~~~~-~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-------~l~~~~g~  151 (269)
                      .+++..+ ....+.+.+++.+++||+++|+|+||||||||++.|.++. ++..|.|.++|.++..       .++.++||
T Consensus         7 ~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~-d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGm   85 (258)
T COG3638           7 KNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLV-DPTSGEILFNGVQITKLKGKELRKLRRDIGM   85 (258)
T ss_pred             eeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhccc-CCCcceEEecccchhccchHHHHHHHHhcee
Confidence            4555666 5677889999999999999999999999999999999966 6889999999987753       12333443


Q ss_pred             ChhhHH--------HH--HHHH------------------HHHHHHHHhCCccee----eccCChHHHHH-HHHHHhCCC
Q 024315          152 KAEDRV--------EN--IRRI------------------GEVAKLFADAGVICI----ACLISPYRKDR-DACRSMLPE  198 (269)
Q Consensus       152 ~~~~~~--------~~--~~~l------------------~~~a~~~~~~g~~~i----v~~~~~~~~~r-~~ar~ll~~  198 (269)
                      -.|...        ++  ..++                  .+....+...|+...    ...+++++++| .++|+++.+
T Consensus        86 IfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~  165 (258)
T COG3638          86 IFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQ  165 (258)
T ss_pred             EeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcC
Confidence            333110        00  0000                  011122333333221    34467888888 799999999


Q ss_pred             CCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315          199 GDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       199 ~~~~~i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      +++  |+-|||.+.+++...+...+.++
T Consensus       166 pki--ILADEPvasLDp~~a~~Vm~~l~  191 (258)
T COG3638         166 PKI--ILADEPVASLDPESAKKVMDILK  191 (258)
T ss_pred             CCE--EecCCcccccChhhHHHHHHHHH
Confidence            999  99999999999999888654443

>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]

Probab=99.62  E-value=3.5e-15  Score=120.75  Aligned_cols=148  Identities=26%  Similarity=0.323  Sum_probs=120.0

Q ss_pred             EcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-----ccccCCCCChhhHHHHHHHHHHHHHHHHhCCcceeeccC
Q 024315          108 TGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----GLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLI  182 (269)
Q Consensus       108 ~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-----~l~~~~g~~~~~~~~~~~~l~~~a~~~~~~g~~~iv~~~  182 (269)
                      +|.+||||||++..|+..|..     -+++||++..     .+..++.+++++|..|+.++...+......+-..++.++
T Consensus         1 MGVsG~GKStvg~~lA~~lg~-----~fidGDdlHp~aNi~KM~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~~~vi~CS   75 (161)
T COG3265           1 MGVSGSGKSTVGSALAERLGA-----KFIDGDDLHPPANIEKMSAGIPLNDDDRWPWLEALGDAAASLAQKNKHVVIACS   75 (161)
T ss_pred             CCCCccCHHHHHHHHHHHcCC-----ceecccccCCHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHhhcCCCceEEecH
Confidence            489999999999999999863     4899999864     345667899999999999998877776666767888899


Q ss_pred             ChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCcccccccccc---ccCCCCCCCeEEEcCCCcCHH
Q 024315          183 SPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDD---PYEPPLNCEVGVHVWYRFELA  259 (269)
Q Consensus       183 ~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~~i~~---~~e~p~~~e~~id~~~~~~~~  259 (269)
                      ...+..|+++|.......|  ||++.+.+.+.+|.      ..|+|+++....+++   ..|+|...|-+|..+-+.+++
T Consensus        76 ALKr~YRD~LR~~~~~~~F--v~L~g~~~~i~~Rm------~~R~gHFM~~~ll~SQfa~LE~P~~de~vi~idi~~~~e  147 (161)
T COG3265          76 ALKRSYRDLLREANPGLRF--VYLDGDFDLILERM------KARKGHFMPASLLDSQFATLEEPGADEDVLTIDIDQPPE  147 (161)
T ss_pred             HHHHHHHHHHhccCCCeEE--EEecCCHHHHHHHH------HhcccCCCCHHHHHHHHHHhcCCCCCCCEEEeeCCCCHH
Confidence            9999999999997776555  99999999999998      889999998766664   567888766444443467788


Q ss_pred             HHHH-HHhhc
Q 024315          260 ETWR-ITKWL  268 (269)
Q Consensus       260 ~~~~-i~~~~  268 (269)
                      ++.. +.+||
T Consensus       148 ~vv~~~~~~l  157 (161)
T COG3265         148 EVVAQALAWL  157 (161)
T ss_pred             HHHHHHHHHH
Confidence            8877 77776

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.62  E-value=1.5e-16  Score=138.50  Aligned_cols=144  Identities=18%  Similarity=0.223  Sum_probs=98.5

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc---------cccc---
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH---------GLNR---  147 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~---------~l~~---  147 (269)
                      .+++..++.+.+.+++++.+.+|++++|+|||||||||+.+.|.+.+ .|.+|.|.++|+++..         ++.+   
T Consensus         8 ~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~-~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ   86 (250)
T COG0411           8 RGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFY-KPSSGTVIFRGRDITGLPPHRIARLGIARTFQ   86 (250)
T ss_pred             ccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccc-cCCCceEEECCcccCCCCHHHHHhccceeecc
Confidence            56788889999999999999999999999999999999999999999 5779999999998862         1100   


Q ss_pred             ----CCCCChhhHH--------------------HHHHHHHH-HHHHHHhCCccee----eccCChHHHH-HHHHHHhCC
Q 024315          148 ----DLSFKAEDRV--------------------ENIRRIGE-VAKLFADAGVICI----ACLISPYRKD-RDACRSMLP  197 (269)
Q Consensus       148 ----~~g~~~~~~~--------------------~~~~~l~~-~a~~~~~~g~~~i----v~~~~~~~~~-r~~ar~ll~  197 (269)
                          -.+++.-+..                    +..+...+ ...++...|+...    ...++.+++. .+++++++.
T Consensus        87 ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~  166 (250)
T COG0411          87 ITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALAT  166 (250)
T ss_pred             cccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhc
Confidence                0011111100                    00011111 1223333444332    2223333333 489999999


Q ss_pred             CCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315          198 EGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       198 ~~~~~~i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      +|++  +++|||.+.+-......+.+.++
T Consensus       167 ~P~l--LLLDEPaAGln~~e~~~l~~~i~  193 (250)
T COG0411         167 QPKL--LLLDEPAAGLNPEETEELAELIR  193 (250)
T ss_pred             CCCE--EEecCccCCCCHHHHHHHHHHHH
Confidence            9999  99999999998888777665544

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.61  E-value=2.3e-15  Score=154.75  Aligned_cols=171  Identities=21%  Similarity=0.253  Sum_probs=116.7

Q ss_pred             ccccceeeccccccccccchhhhcccccccccccccccccccceEEeeCceeeccCc--------ceecCCCeEEEEEcC
Q 024315           39 SRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHKNSVDKRDRQ--------QLLQQKGCVIWITGL  110 (269)
Q Consensus        39 ~~~~~f~~idr~~~~~~~~~~~~~~~~~gagmi~~~~~~~~~~~~~~~~~v~~~~r~--------sl~~~~g~~i~l~G~  110 (269)
                      ....=|++|||.+.+++.+ .+.-       .    ......++++.++.++|+.|.        ++.+++|++++|+|+
T Consensus       320 aa~~I~~~i~~~~~i~~~~-~~~~-------~----~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~  387 (1228)
T KOG0055|consen  320 AAYRIFETIDRKPSIDPYS-KGGR-------V----LSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGP  387 (1228)
T ss_pred             chHHHHHHhcCCCCCCccc-ccCC-------c----ccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECC
Confidence            3444688999999986543 1110       0    111235677777777777664        799999999999999


Q ss_pred             CCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhH-------HHHHHH---------HHHHH---
Q 024315          111 SGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDR-------VENIRR---------IGEVA---  167 (269)
Q Consensus       111 sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~-------~~~~~~---------l~~~a---  167 (269)
                      |||||||+.+.|+|++ +|.+|.|++||.+++.    .++..+|++.|+.       .++++.         +.+.+   
T Consensus       388 SGsGKST~i~LL~Rfy-dP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~a  466 (1228)
T KOG0055|consen  388 SGSGKSTLIQLLARFY-DPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAA  466 (1228)
T ss_pred             CCCCHHHHHHHHHHhc-CCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHc
Confidence            9999999999999988 6789999999999874    5666667666652       122111         11111   


Q ss_pred             --HHH---HhCCccee----eccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHH
Q 024315          168 --KLF---ADAGVICI----ACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL  224 (269)
Q Consensus       168 --~~~---~~~g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~  224 (269)
                        ..|   ...|....    ...++++++|| +++|+++.+|++  +++|||+..||....+-..++
T Consensus       467 na~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~I--LLLDEaTSaLD~~se~~Vq~A  531 (1228)
T KOG0055|consen  467 NAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKI--LLLDEATSALDAESERVVQEA  531 (1228)
T ss_pred             cHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCE--EEecCcccccCHHHHHHHHHH
Confidence              111   11122111    22256777777 799999999999  999999999998776654433

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.61  E-value=6.5e-16  Score=130.21  Aligned_cols=133  Identities=21%  Similarity=0.267  Sum_probs=93.0

Q ss_pred             ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc------cccCCCCChh
Q 024315           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG------LNRDLSFKAE  154 (269)
Q Consensus        81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~------l~~~~g~~~~  154 (269)
                      ++.+.+......+..++++.+|++++|+|+||||||||+++|++.+ ++.+|.+.++|.++...      .+..++|.++
T Consensus         5 ~l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q   83 (178)
T cd03229           5 NVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLE-EPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQ   83 (178)
T ss_pred             EEEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEccccchhHHHHhhcEEEEec
Confidence            4555554555678889999999999999999999999999999987 46689999999876421      1111222222


Q ss_pred             hHHHHHHHHHHHHHHHHhCCcceeecc-CChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          155 DRVENIRRIGEVAKLFADAGVICIACL-ISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       155 ~~~~~~~~l~~~a~~~~~~g~~~iv~~-~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      +.           ..+....+...... .++++++| ..+++++.++++  +++|||+..++....+.+.+.+++
T Consensus        84 ~~-----------~~~~~~t~~~~l~~~lS~G~~qr~~la~al~~~p~l--lilDEP~~~LD~~~~~~l~~~l~~  145 (178)
T cd03229          84 DF-----------ALFPHLTVLENIALGLSGGQQQRVALARALAMDPDV--LLLDEPTSALDPITRREVRALLKS  145 (178)
T ss_pred             CC-----------ccCCCCCHHHheeecCCHHHHHHHHHHHHHHCCCCE--EEEeCCcccCCHHHHHHHHHHHHH
Confidence            11           11111111112221 56666666 689999999999  999999999999888887766553

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.60  E-value=2.5e-15  Score=125.13  Aligned_cols=122  Identities=22%  Similarity=0.290  Sum_probs=90.9

Q ss_pred             ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHH
Q 024315           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENI  160 (269)
Q Consensus        81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~  160 (269)
                      ++.+.+......+..++++++|++++|+|+||||||||++.|++.+ ++.+|.+.++|.++..       ....+.   .
T Consensus         5 ~l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~v~~~g~~~~~-------~~~~~~---~   73 (163)
T cd03216           5 GITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLY-KPDSGEILVDGKEVSF-------ASPRDA---R   73 (163)
T ss_pred             EEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEECCc-------CCHHHH---H
Confidence            4555555556778889999999999999999999999999999988 4668999999987641       111110   0


Q ss_pred             HHHHHHHHHHHhCCcceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          161 RRIGEVAKLFADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       161 ~~l~~~a~~~~~~g~~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                                 ...+ .++...++++++| ..+++++.++++  +++|+|+..++....+.+.+.+++
T Consensus        74 -----------~~~i-~~~~qLS~G~~qrl~laral~~~p~i--lllDEP~~~LD~~~~~~l~~~l~~  127 (163)
T cd03216          74 -----------RAGI-AMVYQLSVGERQMVEIARALARNARL--LILDEPTAALTPAEVERLFKVIRR  127 (163)
T ss_pred             -----------hcCe-EEEEecCHHHHHHHHHHHHHhcCCCE--EEEECCCcCCCHHHHHHHHHHHHH
Confidence                       0011 1111155666666 689999999999  999999999999988887766653

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.60  E-value=1.4e-14  Score=124.07  Aligned_cols=169  Identities=20%  Similarity=0.261  Sum_probs=112.3

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc-CC---ccEEEECCeecCc------ccccCC
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW-RG---KLTYILDGDNCRH------GLNRDL  149 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~-~~---~g~i~l~g~~~~~------~l~~~~  149 (269)
                      .++.+.++...+..++++.++++++++|+|||||||||+++.|.+.... ++   .|.|.++|.++..      .+++.+
T Consensus        11 ~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~v   90 (253)
T COG1117          11 RDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRV   90 (253)
T ss_pred             cceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHh
Confidence            5677888889999999999999999999999999999999999986531 11   5899999999874      345555


Q ss_pred             CCChhhH-------HHHH-----------HHHHH-HHHHHHhCCcce--------eeccCChHHHHHH-HHHHhCCCCCc
Q 024315          150 SFKAEDR-------VENI-----------RRIGE-VAKLFADAGVIC--------IACLISPYRKDRD-ACRSMLPEGDF  201 (269)
Q Consensus       150 g~~~~~~-------~~~~-----------~~l~~-~a~~~~~~g~~~--------iv~~~~~~~~~r~-~ar~ll~~~~~  201 (269)
                      |+..|..       .+++           ..+.+ +...+..+.+..        -...++++++||- ++|+++-+|++
T Consensus        91 GMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeV  170 (253)
T COG1117          91 GMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEV  170 (253)
T ss_pred             eeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcE
Confidence            5554421       0111           01111 111222223221        2234577888885 89999999998


Q ss_pred             cEEEEeCChhHHHhcChhhHHHHHhcCccccccccccccCCCCCCCeEEEcCCCcCHHHHHHHHhh
Q 024315          202 IEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEVGVHVWYRFELAETWRITKW  267 (269)
Q Consensus       202 ~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~~i~~~~e~p~~~e~~id~~~~~~~~~~~~i~~~  267 (269)
                        +++|+|.+.+++-....+.+.+.+        +.+.|      .++|-|   ++.+++.+|-++
T Consensus       171 --lLmDEPtSALDPIsT~kIEeLi~e--------Lk~~y------TIviVT---HnmqQAaRvSD~  217 (253)
T COG1117         171 --LLMDEPTSALDPISTLKIEELITE--------LKKKY------TIVIVT---HNMQQAARVSDY  217 (253)
T ss_pred             --EEecCcccccCchhHHHHHHHHHH--------HHhcc------EEEEEe---CCHHHHHHHhHh
Confidence              999999999987654443333221        22222      455554   568888887653

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.59  E-value=3.1e-15  Score=130.10  Aligned_cols=143  Identities=20%  Similarity=0.221  Sum_probs=97.2

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-------ccccCCCCC
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-------GLNRDLSFK  152 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-------~l~~~~g~~  152 (269)
                      .++.+.+++....+++++.+.+|++++|+|+||||||||++.+.+++ .|.+|.|+++|.++..       .+++.+|+.
T Consensus        12 r~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll-~P~~GeI~i~G~~i~~ls~~~~~~ir~r~Gvl   90 (263)
T COG1127          12 RGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLL-RPDKGEILIDGEDIPQLSEEELYEIRKRMGVL   90 (263)
T ss_pred             eeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccC-CCCCCeEEEcCcchhccCHHHHHHHHhheeEE
Confidence            45677777888889999999999999999999999999999999988 5779999999998762       122222222


Q ss_pred             hhh--------HHHHHH------------HHHHHH-HHHHhCCccee-----eccCChHHHHH-HHHHHhCCCCCccEEE
Q 024315          153 AED--------RVENIR------------RIGEVA-KLFADAGVICI-----ACLISPYRKDR-DACRSMLPEGDFIEVF  205 (269)
Q Consensus       153 ~~~--------~~~~~~------------~l~~~a-~~~~~~g~~~i-----v~~~~~~~~~r-~~ar~ll~~~~~~~i~  205 (269)
                      .|.        -.+++.            .+.+++ .-+...|+...     ...++++-+.| ..||+++.+|++  ++
T Consensus        91 FQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPel--l~  168 (263)
T COG1127          91 FQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPEL--LF  168 (263)
T ss_pred             eeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCE--EE
Confidence            110        001100            011111 12233344332     33345554555 699999999999  99


Q ss_pred             EeCChhHHHhcChhhHHHHH
Q 024315          206 MDVPLQVCEARDPKGLYKLA  225 (269)
Q Consensus       206 ld~p~~~l~~R~~k~l~~~~  225 (269)
                      +|||+..+++-....+.+.+
T Consensus       169 ~DEPtsGLDPI~a~~~~~LI  188 (263)
T COG1127         169 LDEPTSGLDPISAGVIDELI  188 (263)
T ss_pred             ecCCCCCCCcchHHHHHHHH
Confidence            99999999987765544443

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.59  E-value=1e-14  Score=130.97  Aligned_cols=136  Identities=21%  Similarity=0.266  Sum_probs=98.4

Q ss_pred             ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-------ccccCCCCChhhHH---
Q 024315           88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-------GLNRDLSFKAEDRV---  157 (269)
Q Consensus        88 ~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-------~l~~~~g~~~~~~~---  157 (269)
                      .+.+.+++|+.+++|++++|+|.||+|||||.+++.++ ..|.+|.|.++|+++..       .+++.+|+-.|...   
T Consensus        18 ~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~L-e~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLs   96 (339)
T COG1135          18 TVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLL-ERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLS   96 (339)
T ss_pred             ceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhcc-CCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccc
Confidence            37888999999999999999999999999999999985 47889999999988762       22333443333210   


Q ss_pred             -----HHH------------HHHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHh
Q 024315          158 -----ENI------------RRIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEA  215 (269)
Q Consensus       158 -----~~~------------~~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~  215 (269)
                           +++            ..-.++..++.-.|+..    ....++++++|| .++|+++.+|++  +++||+++.+++
T Consensus        97 srTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~i--LL~DEaTSALDP  174 (339)
T COG1135          97 SRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKI--LLCDEATSALDP  174 (339)
T ss_pred             cchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCE--EEecCccccCCh
Confidence                 000            00112333343334432    455567888888 699999999999  999999999999


Q ss_pred             cChhhHHHHHh
Q 024315          216 RDPKGLYKLAR  226 (269)
Q Consensus       216 R~~k~l~~~~r  226 (269)
                      ...+.+.+.++
T Consensus       175 ~TT~sIL~LL~  185 (339)
T COG1135         175 ETTQSILELLK  185 (339)
T ss_pred             HHHHHHHHHHH
Confidence            98877554444

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.59  E-value=8e-15  Score=133.27  Aligned_cols=144  Identities=17%  Similarity=0.249  Sum_probs=103.9

Q ss_pred             cceEEeeC-ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc---ccccCCCCChh-
Q 024315           80 TNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH---GLNRDLSFKAE-  154 (269)
Q Consensus        80 ~~~~~~~~-~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~---~l~~~~g~~~~-  154 (269)
                      .+++..+. ...+.+++|+.+++|++++|+||||||||||+++|++++. +.+|.|.++|.+...   ..+..+||.++ 
T Consensus         8 ~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~-p~~G~i~i~G~~~~~~~~~~~~~igy~~~~   86 (293)
T COG1131           8 RNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK-PTSGEILVLGYDVVKEPAKVRRRIGYVPQE   86 (293)
T ss_pred             cceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC-CCceEEEEcCEeCccCHHHHHhheEEEccC
Confidence            56777787 6889999999999999999999999999999999999985 679999999977653   23333444333 


Q ss_pred             ----------hHHHHHHHHH---------HHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCCh
Q 024315          155 ----------DRVENIRRIG---------EVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPL  210 (269)
Q Consensus       155 ----------~~~~~~~~l~---------~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~  210 (269)
                                +..+.+..+.         .+..++...++..    .+...|.+.++| ..+.+++.+|++  +++|||+
T Consensus        87 ~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~l--liLDEPt  164 (293)
T COG1131          87 PSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPEL--LILDEPT  164 (293)
T ss_pred             CCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCE--EEECCCC
Confidence                      2222222221         2334455555543    123344555555 799999999999  9999999


Q ss_pred             hHHHhcChhhHHHHHh
Q 024315          211 QVCEARDPKGLYKLAR  226 (269)
Q Consensus       211 ~~l~~R~~k~l~~~~r  226 (269)
                      ..+|...+..+.+.++
T Consensus       165 ~GLDp~~~~~~~~~l~  180 (293)
T COG1131         165 SGLDPESRREIWELLR  180 (293)
T ss_pred             cCCCHHHHHHHHHHHH
Confidence            9999988887665544

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.58  E-value=1.2e-14  Score=125.49  Aligned_cols=144  Identities=22%  Similarity=0.255  Sum_probs=98.9

Q ss_pred             ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--ccccCCCCChhhH--
Q 024315           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--GLNRDLSFKAEDR--  156 (269)
Q Consensus        81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--~l~~~~g~~~~~~--  156 (269)
                      ++.+.+......+.+++.+++|++++|+|+||||||||+++|++.+ .+.+|.|.++|.++..  ..+..++|.+++.  
T Consensus         5 ~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~   83 (213)
T cd03259           5 GLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLE-RPDSGEILIDGRDVTGVPPERRNIGMVFQDYAL   83 (213)
T ss_pred             eeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEEcCcCchhhccEEEEcCchhh
Confidence            4555555556778899999999999999999999999999999987 4668999999987642  1112233333221  


Q ss_pred             ------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHH
Q 024315          157 ------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVC  213 (269)
Q Consensus       157 ------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l  213 (269)
                            .+.+..            .......+...++..    .+...++++++| ..+++++.++++  +++|||+..+
T Consensus        84 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~--lllDEPt~~L  161 (213)
T cd03259          84 FPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSL--LLLDEPLSAL  161 (213)
T ss_pred             ccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCE--EEEcCCcccC
Confidence                  111100            001222333444422    233456676666 689999999999  9999999999


Q ss_pred             HhcChhhHHHHHhc
Q 024315          214 EARDPKGLYKLARE  227 (269)
Q Consensus       214 ~~R~~k~l~~~~r~  227 (269)
                      +....+.+++.+++
T Consensus       162 D~~~~~~l~~~l~~  175 (213)
T cd03259         162 DAKLREELREELKE  175 (213)
T ss_pred             CHHHHHHHHHHHHH
Confidence            99988887766653

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.58  E-value=5.7e-15  Score=130.80  Aligned_cols=118  Identities=19%  Similarity=0.254  Sum_probs=91.4

Q ss_pred             ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHHHHHHHHH
Q 024315           88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVA  167 (269)
Q Consensus        88 ~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~l~~~a  167 (269)
                      .+.+.+++||.+.+|++++|+|+|||||||+++.|.+++ .+.+|.|+++|.++.       .+...++.+      .+.
T Consensus        25 ~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~-~pt~G~i~f~g~~i~-------~~~~~~~~~------~v~   90 (268)
T COG4608          25 YVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLE-EPTSGEILFEGKDIT-------KLSKEERRE------RVL   90 (268)
T ss_pred             ceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCc-CCCCceEEEcCcchh-------hcchhHHHH------HHH
Confidence            478899999999999999999999999999999999987 577999999999976       333333322      233


Q ss_pred             HHHHhCCcce-----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhH
Q 024315          168 KLFADAGVIC-----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGL  221 (269)
Q Consensus       168 ~~~~~~g~~~-----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l  221 (269)
                      .++...|+..     ..-..++++.|| .++|+++-++++  +.+|+|.+.++.-.+...
T Consensus        91 elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~l--iV~DEpvSaLDvSiqaqI  148 (268)
T COG4608          91 ELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKL--IVADEPVSALDVSVQAQI  148 (268)
T ss_pred             HHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcE--EEecCchhhcchhHHHHH
Confidence            3333434322     334456777777 699999999999  999999999998666653

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.58  E-value=4.3e-15  Score=125.92  Aligned_cols=137  Identities=20%  Similarity=0.228  Sum_probs=97.6

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHH
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVEN  159 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~  159 (269)
                      .+++.+++.-...+.+|+.+++|.+..|+||||+|||||+..+.+++ ...+|.+.++|.++.       .+..+++++.
T Consensus         5 ~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~-~~d~G~i~i~g~~~~-------~~~s~~LAk~   76 (252)
T COG4604           5 ENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLL-KKDSGEITIDGLELT-------STPSKELAKK   76 (252)
T ss_pred             hhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhc-cccCceEEEeeeecc-------cCChHHHHHH
Confidence            46677777788899999999999999999999999999999999988 466899999999987       3344443333


Q ss_pred             HHHHHHHH------------------------------------HHHHhCCcc-eeeccCChHHHHHH-HHHHhCCCCCc
Q 024315          160 IRRIGEVA------------------------------------KLFADAGVI-CIACLISPYRKDRD-ACRSMLPEGDF  201 (269)
Q Consensus       160 ~~~l~~~a------------------------------------~~~~~~g~~-~iv~~~~~~~~~r~-~ar~ll~~~~~  201 (269)
                      +.-+.|.-                                    ..+.-..+. ...+.+++++++|+ .+.-++.+.++
T Consensus        77 lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdy  156 (252)
T COG4604          77 LSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDY  156 (252)
T ss_pred             HHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcE
Confidence            32222211                                    111111110 12445677888886 55666667788


Q ss_pred             cEEEEeCChhHHHhcChhhHHHHHh
Q 024315          202 IEVFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       202 ~~i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                        |++|+|+..++.+..-...+.+|
T Consensus       157 --vlLDEPLNNLDmkHsv~iMk~Lr  179 (252)
T COG4604         157 --VLLDEPLNNLDMKHSVQIMKILR  179 (252)
T ss_pred             --EEecCcccccchHHHHHHHHHHH
Confidence              99999999999888776555444

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.58  E-value=1.1e-14  Score=125.21  Aligned_cols=144  Identities=21%  Similarity=0.277  Sum_probs=98.7

Q ss_pred             ceEEeeCc-eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-ccccCCCCChhhH--
Q 024315           81 NILWHKNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-GLNRDLSFKAEDR--  156 (269)
Q Consensus        81 ~~~~~~~~-v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-~l~~~~g~~~~~~--  156 (269)
                      ++.+.+.. ....+.+++++++|++++|+|+||||||||+++|++.+ .+.+|.|.++|.++.. ..+..++|.+++.  
T Consensus         4 ~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~   82 (205)
T cd03226           4 NISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLI-KESSGSILLNGKPIKAKERRKSIGYVMQDVDY   82 (205)
T ss_pred             cEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEEhhhHHhhcceEEEecChhh
Confidence            45555544 55678889999999999999999999999999999987 4678999999987632 1122233333321  


Q ss_pred             -------HHHHHHH--------HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhc
Q 024315          157 -------VENIRRI--------GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEAR  216 (269)
Q Consensus       157 -------~~~~~~l--------~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R  216 (269)
                             .+++...        ......+...++..    .+...++++++| ..+++++.++++  +++|||+..++..
T Consensus        83 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l--lllDEPt~~LD~~  160 (205)
T cd03226          83 QLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDL--LIFDEPTSGLDYK  160 (205)
T ss_pred             hhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCE--EEEeCCCccCCHH
Confidence                   1111100        11223344444432    233456666666 688999999999  9999999999998


Q ss_pred             ChhhHHHHHhc
Q 024315          217 DPKGLYKLARE  227 (269)
Q Consensus       217 ~~k~l~~~~r~  227 (269)
                      ..+.+.+.+++
T Consensus       161 ~~~~l~~~l~~  171 (205)
T cd03226         161 NMERVGELIRE  171 (205)
T ss_pred             HHHHHHHHHHH
Confidence            88887766553

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.58  E-value=1.1e-15  Score=128.27  Aligned_cols=132  Identities=20%  Similarity=0.267  Sum_probs=93.0

Q ss_pred             ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc---ccccCCCCChhhHH
Q 024315           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH---GLNRDLSFKAEDRV  157 (269)
Q Consensus        81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~---~l~~~~g~~~~~~~  157 (269)
                      ++.+.+......+..++++++|++++|+|+||||||||++.|++.+ ++.+|.+.++|.++..   ..+..++|.+++..
T Consensus         5 ~l~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~   83 (173)
T cd03230           5 NLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLL-KPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPS   83 (173)
T ss_pred             EEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEEcccchHhhhccEEEEecCCc
Confidence            4444444445678889999999999999999999999999999987 4668999999987642   11222333333211


Q ss_pred             HHHHHHHHHHHHHHhCCcceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          158 ENIRRIGEVAKLFADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       158 ~~~~~l~~~a~~~~~~g~~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                                 .+....+...+. .++++++| ..+++++.++++  +++|||+..++....+.+++.+++
T Consensus        84 -----------~~~~~tv~~~~~-LS~G~~qrv~laral~~~p~i--lllDEPt~~LD~~~~~~l~~~l~~  140 (173)
T cd03230          84 -----------LYENLTVRENLK-LSGGMKQRLALAQALLHDPEL--LILDEPTSGLDPESRREFWELLRE  140 (173)
T ss_pred             -----------cccCCcHHHHhh-cCHHHHHHHHHHHHHHcCCCE--EEEeCCccCCCHHHHHHHHHHHHH
Confidence                       011111111111 56666666 699999999999  999999999999988887766553

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.58  E-value=1e-14  Score=127.97  Aligned_cols=145  Identities=20%  Similarity=0.209  Sum_probs=99.6

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-------ccccCCCCC
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-------GLNRDLSFK  152 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-------~l~~~~g~~  152 (269)
                      .++++.+......+++++++++|++++|+|+||||||||+++|+|.++ +.+|.|.++|.++..       .++..++|.
T Consensus         4 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v   82 (235)
T cd03261           4 RGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR-PDSGEVLIDGEDISGLSEAELYRLRRRMGML   82 (235)
T ss_pred             EEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEccccChhhHHHHhcceEEE
Confidence            355666655667889999999999999999999999999999999884 668999999977532       112233333


Q ss_pred             hhhH--------HHHHHH-------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEE
Q 024315          153 AEDR--------VENIRR-------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFM  206 (269)
Q Consensus       153 ~~~~--------~~~~~~-------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~l  206 (269)
                      +++.        .+++..             ...+...+...++..    .+...++++++| ..+++++.++++  +++
T Consensus        83 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~l--lll  160 (235)
T cd03261          83 FQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPEL--LLY  160 (235)
T ss_pred             ccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE--EEe
Confidence            3221        111100             011222334444422    223456677776 689999999999  999


Q ss_pred             eCChhHHHhcChhhHHHHHhc
Q 024315          207 DVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       207 d~p~~~l~~R~~k~l~~~~r~  227 (269)
                      |||+..++....+.+.+.+++
T Consensus       161 DEPt~~LD~~~~~~l~~~l~~  181 (235)
T cd03261         161 DEPTAGLDPIASGVIDDLIRS  181 (235)
T ss_pred             cCCcccCCHHHHHHHHHHHHH
Confidence            999999999888887665543

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.57  E-value=2e-15  Score=126.65  Aligned_cols=121  Identities=21%  Similarity=0.273  Sum_probs=86.8

Q ss_pred             eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhHHHHHHHHHH
Q 024315           90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDRVENIRRIGE  165 (269)
Q Consensus        90 ~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~~~~~~~l~~  165 (269)
                      ...+..++.+++|++++|+|+||||||||++.|++.++ +.+|.+.++|.++..    .++..++|..++.         
T Consensus        16 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~---------   85 (173)
T cd03246          16 PVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR-PTSGRVRLDGADISQWDPNELGDHVGYLPQDD---------   85 (173)
T ss_pred             cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccC-CCCCeEEECCEEcccCCHHHHHhheEEECCCC---------
Confidence            35677899999999999999999999999999999884 668999999987642    1111222322221         


Q ss_pred             HHHHHHhCCcceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          166 VAKLFADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       166 ~a~~~~~~g~~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                        .++. ..+....  .++++++| ..+++++.++++  +++|+|+..++....+.+.+.+++
T Consensus        86 --~~~~-~tv~~~l--LS~G~~qrv~la~al~~~p~~--lllDEPt~~LD~~~~~~l~~~l~~  141 (173)
T cd03246          86 --ELFS-GSIAENI--LSGGQRQRLGLARALYGNPRI--LVLDEPNSHLDVEGERALNQAIAA  141 (173)
T ss_pred             --cccc-CcHHHHC--cCHHHHHHHHHHHHHhcCCCE--EEEECCccccCHHHHHHHHHHHHH
Confidence              0010 0111111  56666666 699999999999  999999999999988887766653

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.57  E-value=1.2e-14  Score=134.62  Aligned_cols=145  Identities=14%  Similarity=0.109  Sum_probs=101.7

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc---ccccCCCCChhhH
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH---GLNRDLSFKAEDR  156 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~---~l~~~~g~~~~~~  156 (269)
                      .++.+.++...+.++++|++++|++++|+||||||||||+++|++.+ .+.+|.+.++|.++..   ..+..++|.+++.
T Consensus        45 ~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~-~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~  123 (340)
T PRK13536         45 AGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMT-SPDAGKITVLGVPVPARARLARARIGVVPQFD  123 (340)
T ss_pred             EEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC-CCCceEEEECCEECCcchHHHhccEEEEeCCc
Confidence            57788887788899999999999999999999999999999999988 4678999999987642   1222233332211


Q ss_pred             --------HHHHH---HH---------HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChh
Q 024315          157 --------VENIR---RI---------GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQ  211 (269)
Q Consensus       157 --------~~~~~---~l---------~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~  211 (269)
                              .+++.   ..         .....++...++..    .+...++++++| ..+++++.++++  +++|+|+.
T Consensus       124 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~l--LiLDEPt~  201 (340)
T PRK13536        124 NLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQL--LILDEPTT  201 (340)
T ss_pred             cCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCE--EEEECCCC
Confidence                    11111   10         01112233334322    223345666666 699999999999  99999999


Q ss_pred             HHHhcChhhHHHHHhc
Q 024315          212 VCEARDPKGLYKLARE  227 (269)
Q Consensus       212 ~l~~R~~k~l~~~~r~  227 (269)
                      .++...++.+.+.+++
T Consensus       202 gLD~~~r~~l~~~l~~  217 (340)
T PRK13536        202 GLDPHARHLIWERLRS  217 (340)
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999988887766543

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.57  E-value=2.7e-15  Score=125.63  Aligned_cols=121  Identities=21%  Similarity=0.294  Sum_probs=87.4

Q ss_pred             eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhHHHHHHHHHH
Q 024315           90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDRVENIRRIGE  165 (269)
Q Consensus        90 ~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~~~~~~~l~~  165 (269)
                      ...+.+++.+++|++++|+|+||||||||++.|++.++ +.+|.+.++|.++..    ..+..++|..++..        
T Consensus        16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~--------   86 (171)
T cd03228          16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD-PTSGEILIDGVDLRDLDLESLRKNIAYVPQDPF--------   86 (171)
T ss_pred             ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-CCCCEEEECCEEhhhcCHHHHHhhEEEEcCCch--------
Confidence            46788899999999999999999999999999999884 668999999987642    11112233332210        


Q ss_pred             HHHHHHhCCcceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          166 VAKLFADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       166 ~a~~~~~~g~~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                         ++. ..+....  .++++++| ..+++++.++++  +++|||+..++......+.+.+++
T Consensus        87 ---~~~-~t~~e~l--LS~G~~~rl~la~al~~~p~l--lllDEP~~gLD~~~~~~l~~~l~~  141 (171)
T cd03228          87 ---LFS-GTIRENI--LSGGQRQRIAIARALLRDPPI--LILDEATSALDPETEALILEALRA  141 (171)
T ss_pred             ---hcc-chHHHHh--hCHHHHHHHHHHHHHhcCCCE--EEEECCCcCCCHHHHHHHHHHHHH
Confidence               110 0111111  55666666 688999999988  999999999999888887766653

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.57  E-value=2e-14  Score=125.24  Aligned_cols=140  Identities=23%  Similarity=0.284  Sum_probs=97.2

Q ss_pred             cceEEeeCcee----eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-----cccCCC
Q 024315           80 TNILWHKNSVD----KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLS  150 (269)
Q Consensus        80 ~~~~~~~~~v~----~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-----l~~~~g  150 (269)
                      .|+++.+....    +.+.+|+++.+|++++|+|+||||||||+++|+++. .+..|.|.++|......     .++.+.
T Consensus         7 ~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~-~p~~G~I~~~G~~~~~~~~~~~~~~~VQ   85 (252)
T COG1124           7 RNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLE-KPSSGSILLDGKPLAPKKRAKAFYRPVQ   85 (252)
T ss_pred             eceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhccc-CCCCceEEECCcccCccccchhhcccee
Confidence            35555554444    788999999999999999999999999999999977 56799999999765431     122222


Q ss_pred             CChhhH------HHHHHHH--------------HHHHHHHHhCCcce-----eeccCChHHHHH-HHHHHhCCCCCccEE
Q 024315          151 FKAEDR------VENIRRI--------------GEVAKLFADAGVIC-----IACLISPYRKDR-DACRSMLPEGDFIEV  204 (269)
Q Consensus       151 ~~~~~~------~~~~~~l--------------~~~a~~~~~~g~~~-----iv~~~~~~~~~r-~~ar~ll~~~~~~~i  204 (269)
                      +..|+.      +..++++              .++..++...|+..     ....+++++.+| .++|++..++++  +
T Consensus        86 mVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~Pkl--L  163 (252)
T COG1124          86 MVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKL--L  163 (252)
T ss_pred             EEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCE--E
Confidence            211111      0001000              11344555555533     233457788888 799999999999  9


Q ss_pred             EEeCChhHHHhcChhhHH
Q 024315          205 FMDVPLQVCEARDPKGLY  222 (269)
Q Consensus       205 ~ld~p~~~l~~R~~k~l~  222 (269)
                      .+|||+..++...+..+.
T Consensus       164 IlDEptSaLD~siQa~Il  181 (252)
T COG1124         164 ILDEPTSALDVSVQAQIL  181 (252)
T ss_pred             EecCchhhhcHHHHHHHH
Confidence            999999999998887733

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.56  E-value=1.5e-14  Score=125.13  Aligned_cols=145  Identities=17%  Similarity=0.221  Sum_probs=97.9

Q ss_pred             cceEEeeCc--eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-------ccccCCC
Q 024315           80 TNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-------GLNRDLS  150 (269)
Q Consensus        80 ~~~~~~~~~--v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-------~l~~~~g  150 (269)
                      .++++.+..  ....+.+++.+.+|++++|+|+||||||||+++|++.+ .+.+|.|.++|.++..       ..+..++
T Consensus         5 ~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~   83 (216)
T TIGR00960         5 EQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIE-KPTRGKIRFNGQDLTRLRGREIPFLRRHIG   83 (216)
T ss_pred             EEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEehhhcChhHHHHHHHhce
Confidence            345555532  34678889999999999999999999999999999987 4668999999987632       0122233


Q ss_pred             CChhhH--------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEE
Q 024315          151 FKAEDR--------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVF  205 (269)
Q Consensus       151 ~~~~~~--------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~  205 (269)
                      |.+++.        .+++..            ..++...+...++..    .....++++++| ..+++++.++++  ++
T Consensus        84 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l--ll  161 (216)
T TIGR00960        84 MVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPL--LL  161 (216)
T ss_pred             EEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE--EE
Confidence            322221        111110            011223334444422    233456677777 689999999999  99


Q ss_pred             EeCChhHHHhcChhhHHHHHhc
Q 024315          206 MDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       206 ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      +|||+..++....+.+++.+++
T Consensus       162 lDEPt~~LD~~~~~~l~~~l~~  183 (216)
T TIGR00960       162 ADEPTGNLDPELSRDIMRLFEE  183 (216)
T ss_pred             EeCCCCcCCHHHHHHHHHHHHH
Confidence            9999999999988887766553

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.56  E-value=1.2e-14  Score=135.13  Aligned_cols=144  Identities=20%  Similarity=0.229  Sum_probs=100.8

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc--cccCCCCChhhH-
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--LNRDLSFKAEDR-  156 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~--l~~~~g~~~~~~-  156 (269)
                      .++++.+......+++++.+++|++++|+||||||||||+++|+|++ .+.+|.|.++|.++...  .++.++|..|+. 
T Consensus        10 ~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~-~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~   88 (351)
T PRK11432         10 KNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLE-KPTEGQIFIDGEDVTHRSIQQRDICMVFQSYA   88 (351)
T ss_pred             EeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCC-CCCceEEEECCEECCCCCHHHCCEEEEeCCcc
Confidence            45666666677788999999999999999999999999999999988 56789999999877421  112223222211 


Q ss_pred             -------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhH
Q 024315          157 -------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV  212 (269)
Q Consensus       157 -------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~  212 (269)
                             .+++..            ...+...+...++..    ....+++++++| ..+|+++.++++  +++|+|+..
T Consensus        89 lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~l--LLLDEP~s~  166 (351)
T PRK11432         89 LFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKV--LLFDEPLSN  166 (351)
T ss_pred             cCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEcCCccc
Confidence                   111110            011222333334322    234567777777 699999999999  999999999


Q ss_pred             HHhcChhhHHHHHh
Q 024315          213 CEARDPKGLYKLAR  226 (269)
Q Consensus       213 l~~R~~k~l~~~~r  226 (269)
                      ++...++.+...++
T Consensus       167 LD~~~r~~l~~~l~  180 (351)
T PRK11432        167 LDANLRRSMREKIR  180 (351)
T ss_pred             CCHHHHHHHHHHHH
Confidence            99999888765544

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.56  E-value=1.2e-14  Score=132.73  Aligned_cols=144  Identities=18%  Similarity=0.136  Sum_probs=101.0

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc---ccccCCCCChhhH
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH---GLNRDLSFKAEDR  156 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~---~l~~~~g~~~~~~  156 (269)
                      .++++.++...+.++++|++++|++++|+||||||||||+++|++.+ .+.+|.+.++|.++..   ..+..++|.+++.
T Consensus        11 ~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~-~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~   89 (306)
T PRK13537         11 RNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLT-HPDAGSISLCGEPVPSRARHARQRVGVVPQFD   89 (306)
T ss_pred             EeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEecccchHHHHhcEEEEeccC
Confidence            56777777788899999999999999999999999999999999988 4678999999988653   1222333333221


Q ss_pred             --------HHHHH---HH---------HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChh
Q 024315          157 --------VENIR---RI---------GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQ  211 (269)
Q Consensus       157 --------~~~~~---~l---------~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~  211 (269)
                              .+++.   ..         .....++...++..    .+...++++++| ..+++++.++++  +++|+|+.
T Consensus        90 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~l--llLDEPt~  167 (306)
T PRK13537         90 NLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDV--LVLDEPTT  167 (306)
T ss_pred             cCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCE--EEEeCCCc
Confidence                    11111   10         01112233333321    233446666666 699999999999  99999999


Q ss_pred             HHHhcChhhHHHHHh
Q 024315          212 VCEARDPKGLYKLAR  226 (269)
Q Consensus       212 ~l~~R~~k~l~~~~r  226 (269)
                      .++...++.+.+.++
T Consensus       168 gLD~~~~~~l~~~l~  182 (306)
T PRK13537        168 GLDPQARHLMWERLR  182 (306)
T ss_pred             CCCHHHHHHHHHHHH
Confidence            999998888765554

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.56  E-value=1.8e-14  Score=125.14  Aligned_cols=143  Identities=18%  Similarity=0.218  Sum_probs=97.3

Q ss_pred             ceEEeeCc----eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhh-
Q 024315           81 NILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED-  155 (269)
Q Consensus        81 ~~~~~~~~----v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~-  155 (269)
                      ++.+.+..    ....+++++.+.+|++++|+|+||||||||+++|++.+ .+.+|.+.++|.++.. .+..++|.+++ 
T Consensus         5 ~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~-~~~~i~~v~q~~   82 (220)
T cd03293           5 NVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLE-RPTSGEVLVDGEPVTG-PGPDRGYVFQQD   82 (220)
T ss_pred             EEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEECcc-ccCcEEEEeccc
Confidence            45555544    45678899999999999999999999999999999987 4668999999987632 11122222211 


Q ss_pred             -------HHHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChh
Q 024315          156 -------RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQ  211 (269)
Q Consensus       156 -------~~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~  211 (269)
                             ..+++..            ...+...+...++..    .+...++++++| ..+++++.++++  +++|||+.
T Consensus        83 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~l--llLDEPt~  160 (220)
T cd03293          83 ALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDV--LLLDEPFS  160 (220)
T ss_pred             ccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCE--EEECCCCC
Confidence                   1111110            011223344444422    233456666666 689999999999  99999999


Q ss_pred             HHHhcChhhHHHHHhc
Q 024315          212 VCEARDPKGLYKLARE  227 (269)
Q Consensus       212 ~l~~R~~k~l~~~~r~  227 (269)
                      .++....+.+++.+++
T Consensus       161 ~LD~~~~~~~~~~l~~  176 (220)
T cd03293         161 ALDALTREQLQEELLD  176 (220)
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999998887776653

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.56  E-value=1.5e-14  Score=136.56  Aligned_cols=144  Identities=18%  Similarity=0.228  Sum_probs=108.0

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-----ccccCCCCChh
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----GLNRDLSFKAE  154 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-----~l~~~~g~~~~  154 (269)
                      .+++..++.+.+.++++|.+.+|++.+|+|.||+|||||.+.|.|.+ .|.+|.|+++|..++-     .++..+|+..|
T Consensus         8 ~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~-~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQ   86 (501)
T COG3845           8 RGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLY-QPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQ   86 (501)
T ss_pred             eccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcc-cCCcceEEECCEEeccCCHHHHHHcCCcEEee
Confidence            46778888999999999999999999999999999999999999998 5779999999998762     22333343333


Q ss_pred             hHH-----------------------HHHHHHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEE
Q 024315          155 DRV-----------------------ENIRRIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFM  206 (269)
Q Consensus       155 ~~~-----------------------~~~~~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~l  206 (269)
                      ...                       .......++..+...+|+..    .+..++.+.+|| ++++.++..+++  +.+
T Consensus        87 HF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~i--LIL  164 (501)
T COG3845          87 HFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARL--LIL  164 (501)
T ss_pred             ccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCE--EEE
Confidence            110                       00111123444555666633    355556666666 899999999999  999


Q ss_pred             eCChhHHHhcChhhHHHHHh
Q 024315          207 DVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       207 d~p~~~l~~R~~k~l~~~~r  226 (269)
                      |||+.++-+...+.++..++
T Consensus       165 DEPTaVLTP~E~~~lf~~l~  184 (501)
T COG3845         165 DEPTAVLTPQEADELFEILR  184 (501)
T ss_pred             cCCcccCCHHHHHHHHHHHH
Confidence            99999999999988776554

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.56  E-value=2e-14  Score=124.72  Aligned_cols=144  Identities=16%  Similarity=0.195  Sum_probs=95.9

Q ss_pred             ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-----cccCCCCChhh
Q 024315           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAED  155 (269)
Q Consensus        81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-----l~~~~g~~~~~  155 (269)
                      ++.+.+......+.+++.+.+|++++|+|+||||||||+++|++.++ +.+|.+.++|.++...     .+..++|.+++
T Consensus         5 ~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~   83 (222)
T cd03224           5 NLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP-PRSGSIRFDGRDITGLPPHERARAGIGYVPEG   83 (222)
T ss_pred             eEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEEcCCCCHHHHHhcCeEEeccc
Confidence            45555555567788999999999999999999999999999999884 6689999999776421     12223333322


Q ss_pred             H--------HHHHHH----------HHHHHHHHHhC-Cc----ceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChh
Q 024315          156 R--------VENIRR----------IGEVAKLFADA-GV----ICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQ  211 (269)
Q Consensus       156 ~--------~~~~~~----------l~~~a~~~~~~-g~----~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~  211 (269)
                      .        .+++..          .......+... ++    ...+...++++++| ..+++++.++++  +++|+|+.
T Consensus        84 ~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l--lllDEPt~  161 (222)
T cd03224          84 RRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKL--LLLDEPSE  161 (222)
T ss_pred             cccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCE--EEECCCcc
Confidence            1        111100          00011111111 11    11233356666666 689999999999  99999999


Q ss_pred             HHHhcChhhHHHHHhc
Q 024315          212 VCEARDPKGLYKLARE  227 (269)
Q Consensus       212 ~l~~R~~k~l~~~~r~  227 (269)
                      .++....+.+.+.+++
T Consensus       162 ~LD~~~~~~l~~~l~~  177 (222)
T cd03224         162 GLAPKIVEEIFEAIRE  177 (222)
T ss_pred             cCCHHHHHHHHHHHHH
Confidence            9999988887766653

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.56  E-value=1.7e-14  Score=125.03  Aligned_cols=144  Identities=23%  Similarity=0.246  Sum_probs=97.3

Q ss_pred             ceEEeeCc----eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc--------cccC
Q 024315           81 NILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--------LNRD  148 (269)
Q Consensus        81 ~~~~~~~~----v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~--------l~~~  148 (269)
                      ++.+.+..    ....+.+++++++|++++|+|+||||||||+++|+|.++ +.+|.|.++|.++...        .+..
T Consensus         5 ~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~   83 (218)
T cd03255           5 NLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR-PTSGEVRVDGTDISKLSEKELAAFRRRH   83 (218)
T ss_pred             eeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC-CCceeEEECCEehhhcchhHHHHHHhhc
Confidence            45555543    456788899999999999999999999999999999884 6689999999876420        1122


Q ss_pred             CCCChhhH--------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccE
Q 024315          149 LSFKAEDR--------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIE  203 (269)
Q Consensus       149 ~g~~~~~~--------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~  203 (269)
                      ++|.+++.        .+.+..            ...+...+...++..    .+...++++++| ..+++++.++++  
T Consensus        84 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l--  161 (218)
T cd03255          84 IGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKI--  161 (218)
T ss_pred             EEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCE--
Confidence            23222210        111110            011223344444432    233456666666 689999999999  


Q ss_pred             EEEeCChhHHHhcChhhHHHHHhc
Q 024315          204 VFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       204 i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      +++|||+..++....+.+++.+++
T Consensus       162 llLDEP~~~LD~~~~~~l~~~l~~  185 (218)
T cd03255         162 ILADEPTGNLDSETGKEVMELLRE  185 (218)
T ss_pred             EEEcCCcccCCHHHHHHHHHHHHH
Confidence            999999999999888887766553

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.56  E-value=1.3e-14  Score=125.14  Aligned_cols=143  Identities=13%  Similarity=0.182  Sum_probs=95.8

Q ss_pred             ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhh-----
Q 024315           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED-----  155 (269)
Q Consensus        81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~-----  155 (269)
                      ++.+.+......+++++++.+|++++|+|+||||||||+++|+|.+ .+.+|.|.++|.++....+..++|.+++     
T Consensus         5 ~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~   83 (210)
T cd03269           5 NVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGII-LPDSGEVLFDGKPLDIAARNRIGYLPEERGLYP   83 (210)
T ss_pred             EEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCCchhHHHHccEEEeccCCcCCc
Confidence            4455554555678889999999999999999999999999999987 4668999999976532111111221111     


Q ss_pred             ---HHHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHh
Q 024315          156 ---RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEA  215 (269)
Q Consensus       156 ---~~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~  215 (269)
                         ..+++..            ..+....+...++..    .+...++++++| ..+++++.++++  +++|||+..++.
T Consensus        84 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~--lllDEP~~~LD~  161 (210)
T cd03269          84 KMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPEL--LILDEPFSGLDP  161 (210)
T ss_pred             CCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCCcCCCH
Confidence               0111110            011222333344422    233456677776 689999999999  999999999999


Q ss_pred             cChhhHHHHHh
Q 024315          216 RDPKGLYKLAR  226 (269)
Q Consensus       216 R~~k~l~~~~r  226 (269)
                      ...+.+++.++
T Consensus       162 ~~~~~~~~~l~  172 (210)
T cd03269         162 VNVELLKDVIR  172 (210)
T ss_pred             HHHHHHHHHHH
Confidence            88877776655

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.56  E-value=2.4e-14  Score=123.39  Aligned_cols=143  Identities=22%  Similarity=0.256  Sum_probs=97.2

Q ss_pred             ceEEeeCc--eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChh
Q 024315           81 NILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAE  154 (269)
Q Consensus        81 ~~~~~~~~--v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~  154 (269)
                      ++.+.+..  ....+.+++.+++|++++|+|+||||||||+++|++.+ .+.+|.+.++|.++..    ..+..++|.++
T Consensus         4 ~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q   82 (211)
T cd03225           4 NLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL-GPTSGEVLVDGKDLTKLSLKELRRKVGLVFQ   82 (211)
T ss_pred             eEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEEcccCCHHHHHhhceEEec
Confidence            44555444  55678899999999999999999999999999999988 4668999999987642    11222333332


Q ss_pred             hH---------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeC
Q 024315          155 DR---------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDV  208 (269)
Q Consensus       155 ~~---------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~  208 (269)
                      +.         .+++..            .......+...++..    .+...++++++| ..+++++.++++  +++||
T Consensus        83 ~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l--lllDE  160 (211)
T cd03225          83 NPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDI--LLLDE  160 (211)
T ss_pred             ChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCE--EEEcC
Confidence            21         111110            001122333344422    233456677666 689999999999  99999


Q ss_pred             ChhHHHhcChhhHHHHHh
Q 024315          209 PLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       209 p~~~l~~R~~k~l~~~~r  226 (269)
                      |+..++....+.+.+.++
T Consensus       161 Pt~~LD~~~~~~~~~~l~  178 (211)
T cd03225         161 PTAGLDPAGRRELLELLK  178 (211)
T ss_pred             CcccCCHHHHHHHHHHHH
Confidence            999999988888776655

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.56  E-value=3.2e-14  Score=122.08  Aligned_cols=144  Identities=21%  Similarity=0.177  Sum_probs=97.8

Q ss_pred             ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--------ccccCCCCC
Q 024315           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--------GLNRDLSFK  152 (269)
Q Consensus        81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--------~l~~~~g~~  152 (269)
                      ++.+.+......+.+++.+++|++++|+|+||||||||++.|+|.+ .+..|.+.++|.++..        ..+..++|.
T Consensus         3 ~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~   81 (206)
T TIGR03608         3 NISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLE-KFDSGQVYLNGKETPPLNSKKASKFRREKLGYL   81 (206)
T ss_pred             ceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCC-CCCCeEEEECCEEccccchhhHHHHHHhCeeEE
Confidence            4555555556788899999999999999999999999999999988 4668999999987431        011223332


Q ss_pred             hhhH--------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEe
Q 024315          153 AEDR--------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMD  207 (269)
Q Consensus       153 ~~~~--------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld  207 (269)
                      .++.        .+++..            ...+...+...++..    .+...++++++| ..+++++.++++  +++|
T Consensus        82 ~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~l--lllD  159 (206)
T TIGR03608        82 FQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPL--ILAD  159 (206)
T ss_pred             ecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEe
Confidence            2211        111110            011223334444422    233456666666 689999999999  9999


Q ss_pred             CChhHHHhcChhhHHHHHhc
Q 024315          208 VPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       208 ~p~~~l~~R~~k~l~~~~r~  227 (269)
                      +|+..++....+.+.+.+++
T Consensus       160 EPt~~LD~~~~~~l~~~l~~  179 (206)
T TIGR03608       160 EPTGSLDPKNRDEVLDLLLE  179 (206)
T ss_pred             CCcCCCCHHHHHHHHHHHHH
Confidence            99999999888887766653

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.56  E-value=5.7e-15  Score=147.82  Aligned_cols=143  Identities=22%  Similarity=0.202  Sum_probs=101.4

Q ss_pred             ceEEeeCce--eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChh
Q 024315           81 NILWHKNSV--DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAE  154 (269)
Q Consensus        81 ~~~~~~~~v--~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~  154 (269)
                      |++|++..-  ...++.++++++|+.++|+|+||||||||+|.|.|++ .|..|.|++||.++..    .+++.+++.+|
T Consensus       476 nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly-~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q  554 (709)
T COG2274         476 NVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLY-KPQQGRILLDGVDLNDIDLASLRRQVGYVLQ  554 (709)
T ss_pred             EEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEeHHhcCHHHHHhheeEEcc
Confidence            444444322  2346668999999999999999999999999999988 5779999999999863    56666676666


Q ss_pred             hHH-------HHHHH------HHHHHHHHHhCCc-----------c----eeeccCChHHHHH-HHHHHhCCCCCccEEE
Q 024315          155 DRV-------ENIRR------IGEVAKLFADAGV-----------I----CIACLISPYRKDR-DACRSMLPEGDFIEVF  205 (269)
Q Consensus       155 ~~~-------~~~~~------l~~~a~~~~~~g~-----------~----~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~  205 (269)
                      +-.       +++..      ..++......+|.           .    +-....|++++|| ..||+++.+|++  +.
T Consensus       555 ~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~I--Ll  632 (709)
T COG2274         555 DPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKI--LL  632 (709)
T ss_pred             cchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCE--EE
Confidence            431       11110      0111112222222           1    1234457788887 799999999999  99


Q ss_pred             EeCChhHHHhcChhhHHHHHh
Q 024315          206 MDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       206 ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      +|||++.+|....+..++.+.
T Consensus       633 LDEaTSaLD~~sE~~I~~~L~  653 (709)
T COG2274         633 LDEATSALDPETEAIILQNLL  653 (709)
T ss_pred             EeCcccccCHhHHHHHHHHHH
Confidence            999999999999888775544

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.56  E-value=2.8e-14  Score=123.26  Aligned_cols=144  Identities=21%  Similarity=0.257  Sum_probs=97.9

Q ss_pred             ceEEee-CceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-------ccccCCCCC
Q 024315           81 NILWHK-NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-------GLNRDLSFK  152 (269)
Q Consensus        81 ~~~~~~-~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-------~l~~~~g~~  152 (269)
                      ++.+.+ ......+..++.+++|++++|+|+||||||||+++|++.++ +.+|.+.++|.++..       .++..++|.
T Consensus         6 ~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~   84 (214)
T TIGR02673         6 NVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT-PSRGQVRIAGEDVNRLRGRQLPLLRRRIGVV   84 (214)
T ss_pred             eeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEEcccCCHHHHHHHHhheEEE
Confidence            445554 23456788899999999999999999999999999999874 668999999987642       112223333


Q ss_pred             hhhH--------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEe
Q 024315          153 AEDR--------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMD  207 (269)
Q Consensus       153 ~~~~--------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld  207 (269)
                      +++.        .+++..            .......+...++..    .+...++++++| ..+++++.++++  +++|
T Consensus        85 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l--llLD  162 (214)
T TIGR02673        85 FQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPL--LLAD  162 (214)
T ss_pred             ecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCE--EEEe
Confidence            3221        111110            011222333444422    223456666666 689999999999  9999


Q ss_pred             CChhHHHhcChhhHHHHHhc
Q 024315          208 VPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       208 ~p~~~l~~R~~k~l~~~~r~  227 (269)
                      ||+..++......+++.+++
T Consensus       163 EPt~~LD~~~~~~l~~~l~~  182 (214)
T TIGR02673       163 EPTGNLDPDLSERILDLLKR  182 (214)
T ss_pred             CCcccCCHHHHHHHHHHHHH
Confidence            99999999988887766654

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.56  E-value=1.5e-14  Score=134.64  Aligned_cols=144  Identities=22%  Similarity=0.236  Sum_probs=101.7

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--ccccCCCCChhhH-
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--GLNRDLSFKAEDR-  156 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--~l~~~~g~~~~~~-  156 (269)
                      .++++.+..+...+.+++.+.+|++++|+||||||||||+++|+|++ .+.+|.|.++|.++..  ..++.++|..|+. 
T Consensus         8 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~-~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~   86 (353)
T TIGR03265         8 DNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLE-RQTAGTIYQGGRDITRLPPQKRDYGIVFQSYA   86 (353)
T ss_pred             EEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCC-CCCceEEEECCEECCCCCHHHCCEEEEeCCcc
Confidence            46677776777788999999999999999999999999999999987 5678999999988742  1112233332221 


Q ss_pred             -------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhH
Q 024315          157 -------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV  212 (269)
Q Consensus       157 -------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~  212 (269)
                             .+++..            ...+...+...++..    ....+++++++| ..+|+++.++++  +++|||+..
T Consensus        87 lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~l--lLLDEP~s~  164 (353)
T TIGR03265        87 LFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGL--LLLDEPLSA  164 (353)
T ss_pred             cCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEcCCccc
Confidence                   111110            112223334444432    234457777777 699999999999  999999999


Q ss_pred             HHhcChhhHHHHHh
Q 024315          213 CEARDPKGLYKLAR  226 (269)
Q Consensus       213 l~~R~~k~l~~~~r  226 (269)
                      ++...++.+.+.++
T Consensus       165 LD~~~r~~l~~~L~  178 (353)
T TIGR03265       165 LDARVREHLRTEIR  178 (353)
T ss_pred             CCHHHHHHHHHHHH
Confidence            99988887665544

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.55  E-value=8.6e-15  Score=125.91  Aligned_cols=137  Identities=15%  Similarity=0.108  Sum_probs=91.8

Q ss_pred             eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc--CCccEEEECCeecCc---ccccCCCCChhhHHHHH-HH
Q 024315           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW--RGKLTYILDGDNCRH---GLNRDLSFKAEDRVENI-RR  162 (269)
Q Consensus        89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~--~~~g~i~l~g~~~~~---~l~~~~g~~~~~~~~~~-~~  162 (269)
                      ....+..++.+++|++++|+|+||||||||++.|++.+++  +.+|.+.++|.++..   ..+..++|.+++..-.. ..
T Consensus        20 ~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t   99 (202)
T cd03233          20 IPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLT   99 (202)
T ss_pred             ceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCc
Confidence            3455677999999999999999999999999999998853  668999999987642   22333444443321000 00


Q ss_pred             HHHHHHHHHhCCcceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          163 IGEVAKLFADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       163 l~~~a~~~~~~g~~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      +.+.................++++++| ..+++++.++++  +++|||+..++...++.+++.+++
T Consensus       100 v~~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~l--lllDEPt~~LD~~~~~~~~~~l~~  163 (202)
T cd03233         100 VRETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRASV--LCWDNSTRGLDSSTALEILKCIRT  163 (202)
T ss_pred             HHHHHhhhhhhccccchhhCCHHHHHHHHHHHHHhhCCCE--EEEcCCCccCCHHHHHHHHHHHHH
Confidence            011100000000122233445666666 699999999998  999999999999988887766553

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.55  E-value=1.6e-14  Score=134.58  Aligned_cols=144  Identities=18%  Similarity=0.108  Sum_probs=100.0

Q ss_pred             cceEEee-CceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc--cccCCCCChhhH
Q 024315           80 TNILWHK-NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--LNRDLSFKAEDR  156 (269)
Q Consensus        80 ~~~~~~~-~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~--l~~~~g~~~~~~  156 (269)
                      .++.+.+ ......+++++++.+|++++|+||||||||||+++|+|++ .+.+|.|.++|.++...  ..+.++|..|+.
T Consensus         7 ~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~-~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~   85 (356)
T PRK11650          7 QAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLE-RITSGEIWIGGRVVNELEPADRDIAMVFQNY   85 (356)
T ss_pred             EeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCC-CCCceEEEECCEECCCCCHHHCCEEEEeCCc
Confidence            3555555 4566788899999999999999999999999999999987 46789999999877421  112233322211


Q ss_pred             --------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChh
Q 024315          157 --------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQ  211 (269)
Q Consensus       157 --------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~  211 (269)
                              .+++..            ...+...+...++..    .+..+++++++| ..+|+++.++++  +++|||+.
T Consensus        86 ~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~l--lLLDEP~s  163 (356)
T PRK11650         86 ALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAV--FLFDEPLS  163 (356)
T ss_pred             cccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCcc
Confidence                    111110            011223333444432    234567777777 699999999999  99999999


Q ss_pred             HHHhcChhhHHHHHh
Q 024315          212 VCEARDPKGLYKLAR  226 (269)
Q Consensus       212 ~l~~R~~k~l~~~~r  226 (269)
                      .++...++.+.+.++
T Consensus       164 ~LD~~~r~~l~~~l~  178 (356)
T PRK11650        164 NLDAKLRVQMRLEIQ  178 (356)
T ss_pred             cCCHHHHHHHHHHHH
Confidence            999988887665544

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.55  E-value=1.1e-14  Score=142.00  Aligned_cols=143  Identities=25%  Similarity=0.246  Sum_probs=97.4

Q ss_pred             eEEeeCceee------ccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc---ccccCCCCC
Q 024315           82 ILWHKNSVDK------RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH---GLNRDLSFK  152 (269)
Q Consensus        82 ~~~~~~~v~~------~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~---~l~~~~g~~  152 (269)
                      +++++..++|      .++.++++++|+.++|+|+||||||||++.|.|.+ ++.+|.|.++|.++..   .+++.++|.
T Consensus       335 I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~-~p~~G~I~i~g~~i~~~~~~lr~~i~~V  413 (529)
T TIGR02868       335 LELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLL-DPLQGEVTLDGVSVSSLQDELRRRISVF  413 (529)
T ss_pred             EEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEEhhhHHHHHHhheEEE
Confidence            4444444443      45678999999999999999999999999999988 5779999999987652   222333443


Q ss_pred             hhhH-------HHHHH------------HHHHHH---HHHH--hCCccee----eccCChHHHHH-HHHHHhCCCCCccE
Q 024315          153 AEDR-------VENIR------------RIGEVA---KLFA--DAGVICI----ACLISPYRKDR-DACRSMLPEGDFIE  203 (269)
Q Consensus       153 ~~~~-------~~~~~------------~l~~~a---~~~~--~~g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~  203 (269)
                      +|+-       ++++.            ...+.+   ....  ..|+...    ....+++++|| ..+|+++.++++  
T Consensus       414 ~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~i--  491 (529)
T TIGR02868       414 AQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPI--  491 (529)
T ss_pred             ccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCE--
Confidence            3321       11111            111111   1111  1122221    23457788888 799999999999  


Q ss_pred             EEEeCChhHHHhcChhhHHHHHhc
Q 024315          204 VFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       204 i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      +.+|||++.+|....+.+++..++
T Consensus       492 liLDE~TSaLD~~te~~I~~~l~~  515 (529)
T TIGR02868       492 LLLDEPTEHLDAGTESELLEDLLA  515 (529)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHH
Confidence            999999999999998888776653

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.55  E-value=5.9e-14  Score=117.69  Aligned_cols=137  Identities=19%  Similarity=0.260  Sum_probs=92.8

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc---------------
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---------------  144 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~---------------  144 (269)
                      .++.|.+...+  -+.+++++.|++++|+||||||||||++.++|+. .|.+|.++++|.+....               
T Consensus         5 ~~V~~~y~~~~--~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~-~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnN   81 (231)
T COG3840           5 DDVRFSYGHLP--MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFE-TPASGEILINGVDHTASPPAERPVSMLFQENN   81 (231)
T ss_pred             cceEEeeCcce--EEEEEeecCCcEEEEECCCCccHHHHHHHHHhcc-CCCCceEEEcCeecCcCCcccCChhhhhhccc
Confidence            35666654332  2457889999999999999999999999999988 57899999999887520               


Q ss_pred             c--------ccCCCCChhhH--HHHHHHHHHHHHHHHhCCcc----eeeccCChHHHHH-HHHHHhCCCCCccEEEEeCC
Q 024315          145 L--------NRDLSFKAEDR--VENIRRIGEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVP  209 (269)
Q Consensus       145 l--------~~~~g~~~~~~--~~~~~~l~~~a~~~~~~g~~----~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p  209 (269)
                      +        +-.+|.++.-+  .+...++   .......|+.    -+....++++++| ..+|.++.+.++  +++|||
T Consensus        82 LFaHLtV~qNigLGl~P~LkL~a~~r~~v---~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~Pi--lLLDEP  156 (231)
T COG3840          82 LFAHLTVAQNIGLGLSPGLKLNAEQREKV---EAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPI--LLLDEP  156 (231)
T ss_pred             cchhhhhhhhhcccCCcccccCHHHHHHH---HHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCe--EEecCc
Confidence            1        11122222111  1111111   2222233332    2345567788888 688999998888  899999


Q ss_pred             hhHHHhcChhhHHHH
Q 024315          210 LQVCEARDPKGLYKL  224 (269)
Q Consensus       210 ~~~l~~R~~k~l~~~  224 (269)
                      ++.+++..+......
T Consensus       157 FsALdP~LR~eMl~L  171 (231)
T COG3840         157 FSALDPALRAEMLAL  171 (231)
T ss_pred             hhhcCHHHHHHHHHH
Confidence            999999988775433

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.55  E-value=2e-14  Score=124.70  Aligned_cols=143  Identities=20%  Similarity=0.200  Sum_probs=96.7

Q ss_pred             ceEEeeCc--eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc---ccccCCCCChhh
Q 024315           81 NILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH---GLNRDLSFKAED  155 (269)
Q Consensus        81 ~~~~~~~~--v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~---~l~~~~g~~~~~  155 (269)
                      ++.+.+..  ....+.+++++++|++++|+|+||||||||+++|++.++ +.+|.+.++|.++..   ..+..++|..++
T Consensus         5 ~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~   83 (220)
T cd03263           5 NLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR-PTSGTAYINGYSIRTDRKAARQSLGYCPQF   83 (220)
T ss_pred             eeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEecccchHHHhhhEEEecCc
Confidence            45555544  557788999999999999999999999999999999874 668999999987632   111222222221


Q ss_pred             --------HHHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCCh
Q 024315          156 --------RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPL  210 (269)
Q Consensus       156 --------~~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~  210 (269)
                              ..+++..            .......+...++..    .+...++++++| ..+++++.++++  +++|||+
T Consensus        84 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l--lllDEP~  161 (220)
T cd03263          84 DALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSV--LLLDEPT  161 (220)
T ss_pred             CCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCE--EEECCCC
Confidence                    0111110            011222333344422    133456666666 689999999999  9999999


Q ss_pred             hHHHhcChhhHHHHHh
Q 024315          211 QVCEARDPKGLYKLAR  226 (269)
Q Consensus       211 ~~l~~R~~k~l~~~~r  226 (269)
                      ..++....+.+.+.++
T Consensus       162 ~~LD~~~~~~l~~~l~  177 (220)
T cd03263         162 SGLDPASRRAIWDLIL  177 (220)
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            9999998888776655

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.55  E-value=2.7e-14  Score=124.05  Aligned_cols=144  Identities=16%  Similarity=0.226  Sum_probs=97.6

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc---ccccCCCCChhhH
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH---GLNRDLSFKAEDR  156 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~---~l~~~~g~~~~~~  156 (269)
                      .++++.+......+++++++.+|++++|+|+||||||||+++|+|.+ .+.+|.|.++|.++..   ..+..++|.+++.
T Consensus         4 ~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~   82 (220)
T cd03265           4 ENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLL-KPTSGRATVAGHDVVREPREVRRRIGIVFQDL   82 (220)
T ss_pred             EEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEecCcChHHHhhcEEEecCCc
Confidence            35566665666788899999999999999999999999999999987 4668999999976531   1111222222211


Q ss_pred             --------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChh
Q 024315          157 --------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQ  211 (269)
Q Consensus       157 --------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~  211 (269)
                              .+.+..            ...+...+...++..    .+...++++++| ..+++++.++++  +++|||+.
T Consensus        83 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~l--lllDEPt~  160 (220)
T cd03265          83 SVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEV--LFLDEPTI  160 (220)
T ss_pred             cccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEcCCcc
Confidence                    011100            011222333444422    233456666776 689999999999  99999999


Q ss_pred             HHHhcChhhHHHHHh
Q 024315          212 VCEARDPKGLYKLAR  226 (269)
Q Consensus       212 ~l~~R~~k~l~~~~r  226 (269)
                      .++....+.+++.++
T Consensus       161 ~LD~~~~~~l~~~l~  175 (220)
T cd03265         161 GLDPQTRAHVWEYIE  175 (220)
T ss_pred             CCCHHHHHHHHHHHH
Confidence            999998888776554

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.55  E-value=2.5e-14  Score=125.61  Aligned_cols=144  Identities=18%  Similarity=0.254  Sum_probs=97.2

Q ss_pred             ceEEeeCc-eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-------ccccCCCCC
Q 024315           81 NILWHKNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-------GLNRDLSFK  152 (269)
Q Consensus        81 ~~~~~~~~-v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-------~l~~~~g~~  152 (269)
                      ++.+.+.. ....+.+++++.+|++++|+|+||||||||+++|++.+ .+.+|.+.++|.++..       .++..++|.
T Consensus         5 ~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~   83 (241)
T cd03256           5 NLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLV-EPTSGSVLIDGTDINKLKGKALRQLRRQIGMI   83 (241)
T ss_pred             eEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-CCCCceEEECCEeccccCHhHHHHHHhccEEE
Confidence            45555544 55678889999999999999999999999999999987 4668999999977542       112223322


Q ss_pred             hhhH--------HHHHH--------------------HHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCC
Q 024315          153 AEDR--------VENIR--------------------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEG  199 (269)
Q Consensus       153 ~~~~--------~~~~~--------------------~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~  199 (269)
                      +++.        .+++.                    ....+...+...++..    .+...++++++| ..+++++.++
T Consensus        84 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p  163 (241)
T cd03256          84 FQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQP  163 (241)
T ss_pred             cccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCC
Confidence            2211        11110                    0011122333444422    223456666666 6899999999


Q ss_pred             CccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          200 DFIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       200 ~~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      ++  +++|||+..++....+.+++.+++
T Consensus       164 ~l--lllDEPt~~LD~~~~~~l~~~l~~  189 (241)
T cd03256         164 KL--ILADEPVASLDPASSRQVMDLLKR  189 (241)
T ss_pred             CE--EEEeCccccCCHHHHHHHHHHHHH
Confidence            99  999999999999988887766553

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.55  E-value=4e-14  Score=122.20  Aligned_cols=145  Identities=19%  Similarity=0.178  Sum_probs=98.0

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc--cccCCCCChhhH-
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--LNRDLSFKAEDR-  156 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~--l~~~~g~~~~~~-  156 (269)
                      .++.+.+......+.+++++++|++++|+|+||||||||++.|++.++ +.+|.+.++|.++...  .+..++|.+++. 
T Consensus         4 ~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~   82 (213)
T cd03301           4 ENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE-PTSGRIYIGGRDVTDLPPKDRDIAMVFQNYA   82 (213)
T ss_pred             EeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECCcCCcccceEEEEecChh
Confidence            345555555556788999999999999999999999999999999884 6689999999876421  111222222211 


Q ss_pred             -------HHHHHH-----------H-HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhH
Q 024315          157 -------VENIRR-----------I-GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV  212 (269)
Q Consensus       157 -------~~~~~~-----------l-~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~  212 (269)
                             .+++..           . ......+...++..    .+...++++++| ..+++++.++++  +++|||+..
T Consensus        83 ~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l--lllDEPt~~  160 (213)
T cd03301          83 LYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKV--FLMDEPLSN  160 (213)
T ss_pred             hccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEcCCccc
Confidence                   111100           0 11122334444422    223456666666 699999999998  999999999


Q ss_pred             HHhcChhhHHHHHhc
Q 024315          213 CEARDPKGLYKLARE  227 (269)
Q Consensus       213 l~~R~~k~l~~~~r~  227 (269)
                      ++....+.+++.+++
T Consensus       161 LD~~~~~~l~~~l~~  175 (213)
T cd03301         161 LDAKLRVQMRAELKR  175 (213)
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999988887766553

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.55  E-value=1.8e-14  Score=136.06  Aligned_cols=144  Identities=18%  Similarity=0.255  Sum_probs=100.6

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhh
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAED  155 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~  155 (269)
                      .++++.+......+..+|.+++|++++|+||||||||||++.|+|.++ +.+|.|.++|.++..    .+++.+++..++
T Consensus         7 ~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~-p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~   85 (402)
T PRK09536          7 SDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT-PTAGTVLVAGDDVEALSARAASRRVASVPQD   85 (402)
T ss_pred             eeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC-CCCcEEEECCEEcCcCCHHHHhcceEEEccC
Confidence            467777777778899999999999999999999999999999999884 678999999987643    122233333221


Q ss_pred             HH--------HHHH----------------HHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEE
Q 024315          156 RV--------ENIR----------------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFM  206 (269)
Q Consensus       156 ~~--------~~~~----------------~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~l  206 (269)
                      ..        +.+.                ....+...+...++..    .+..+|+++++| .++++++.++++  +++
T Consensus        86 ~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~i--LLL  163 (402)
T PRK09536         86 TSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPV--LLL  163 (402)
T ss_pred             CCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEE
Confidence            10        0100                0011222333334422    233456777777 699999999999  999


Q ss_pred             eCChhHHHhcChhhHHHHHh
Q 024315          207 DVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       207 d~p~~~l~~R~~k~l~~~~r  226 (269)
                      |||+..++...+..+.+.++
T Consensus       164 DEPtsgLD~~~~~~l~~lL~  183 (402)
T PRK09536        164 DEPTASLDINHQVRTLELVR  183 (402)
T ss_pred             ECCcccCCHHHHHHHHHHHH
Confidence            99999999988777665444

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.55  E-value=2.5e-14  Score=134.19  Aligned_cols=144  Identities=17%  Similarity=0.154  Sum_probs=100.5

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc--cccCCCCChhhH-
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--LNRDLSFKAEDR-  156 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~--l~~~~g~~~~~~-  156 (269)
                      .++.+.+......+.+++.+.+|++++|+||||||||||+++|+|++ .+.+|.|.++|.++...  .++.++|..|+. 
T Consensus        18 ~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~-~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~   96 (375)
T PRK09452         18 RGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFE-TPDSGRIMLDGQDITHVPAENRHVNTVFQSYA   96 (375)
T ss_pred             EEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCC-CCCceEEEECCEECCCCCHHHCCEEEEecCcc
Confidence            45666666666788899999999999999999999999999999987 56789999999987420  112223222211 


Q ss_pred             -------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhH
Q 024315          157 -------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV  212 (269)
Q Consensus       157 -------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~  212 (269)
                             .+++..            ...+...+...++..    .+..+++++++| ..+|+++.++++  +++|+|+..
T Consensus        97 lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~l--lLLDEP~s~  174 (375)
T PRK09452         97 LFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKV--LLLDESLSA  174 (375)
T ss_pred             cCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCCCc
Confidence                   111110            011222333334432    234457777777 699999999999  999999999


Q ss_pred             HHhcChhhHHHHHh
Q 024315          213 CEARDPKGLYKLAR  226 (269)
Q Consensus       213 l~~R~~k~l~~~~r  226 (269)
                      ++...++.+++.++
T Consensus       175 LD~~~r~~l~~~L~  188 (375)
T PRK09452        175 LDYKLRKQMQNELK  188 (375)
T ss_pred             CCHHHHHHHHHHHH
Confidence            99998888765554

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.55  E-value=2.8e-15  Score=126.31  Aligned_cols=123  Identities=25%  Similarity=0.248  Sum_probs=88.0

Q ss_pred             eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc---ccccCCCCChhhHHHHHHHHHHH
Q 024315           90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH---GLNRDLSFKAEDRVENIRRIGEV  166 (269)
Q Consensus        90 ~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~---~l~~~~g~~~~~~~~~~~~l~~~  166 (269)
                      ...++.++++.+|++++|+|+||||||||++.|++.+ ++.+|.+.++|.++..   .++..++|.+++..         
T Consensus        16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~---------   85 (178)
T cd03247          16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDL-KPQQGEITLDGVPVSDLEKALSSLISVLNQRPY---------   85 (178)
T ss_pred             cceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccC-CCCCCEEEECCEEHHHHHHHHHhhEEEEccCCe---------
Confidence            3567789999999999999999999999999999987 4678999999986531   11122233332210         


Q ss_pred             HHHHHhCCcce-eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          167 AKLFADAGVIC-IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       167 a~~~~~~g~~~-iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                        ++. ..+.. +....++++++| ..+++++.++++  +++|+|+..++....+.+++.+++
T Consensus        86 --~~~-~tv~~~i~~~LS~G~~qrv~laral~~~p~~--lllDEP~~~LD~~~~~~l~~~l~~  143 (178)
T cd03247          86 --LFD-TTLRNNLGRRFSGGERQRLALARILLQDAPI--VLLDEPTVGLDPITERQLLSLIFE  143 (178)
T ss_pred             --eec-ccHHHhhcccCCHHHHHHHHHHHHHhcCCCE--EEEECCcccCCHHHHHHHHHHHHH
Confidence              000 00100 133456666666 699999999999  999999999999888887776654

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.55  E-value=1.4e-14  Score=123.62  Aligned_cols=131  Identities=15%  Similarity=0.175  Sum_probs=89.9

Q ss_pred             eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhc-cCCccEEEECCeecCcccccCCCCChhhHHHHH-HHHHHH
Q 024315           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDNCRHGLNRDLSFKAEDRVENI-RRIGEV  166 (269)
Q Consensus        89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~-~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~-~~l~~~  166 (269)
                      ....+.+++.+++|++++|+|+||||||||++.|++.+. .+.+|.+.++|.++...++..++|..++..-.. ..+.+.
T Consensus        20 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~   99 (192)
T cd03232          20 RQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREA   99 (192)
T ss_pred             eEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHH
Confidence            446788899999999999999999999999999999753 356899999998764222333444443221000 000111


Q ss_pred             HHHHHhCCcceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          167 AKLFADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       167 a~~~~~~g~~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      .......      ...++++++| ..+++++.++++  +++|+|+..++....+.+.+.+++
T Consensus       100 l~~~~~~------~~LSgGe~qrv~la~al~~~p~v--lllDEP~~~LD~~~~~~l~~~l~~  153 (192)
T cd03232         100 LRFSALL------RGLSVEQRKRLTIGVELAAKPSI--LFLDEPTSGLDSQAAYNIVRFLKK  153 (192)
T ss_pred             HHHHHHH------hcCCHHHhHHHHHHHHHhcCCcE--EEEeCCCcCCCHHHHHHHHHHHHH
Confidence            0000000      0455666666 689999999999  999999999999888887766553

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.54  E-value=2.9e-14  Score=124.30  Aligned_cols=145  Identities=20%  Similarity=0.192  Sum_probs=98.9

Q ss_pred             ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhc----cCCccEEEECCeecCc------ccccCCC
Q 024315           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH----WRGKLTYILDGDNCRH------GLNRDLS  150 (269)
Q Consensus        81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~----~~~~g~i~l~g~~~~~------~l~~~~g  150 (269)
                      ++.+.+......+.+++++.+|++++|+|+||||||||+++|+|.+.    .+.+|.|.++|.++..      ..+..++
T Consensus         5 ~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~   84 (227)
T cd03260           5 DLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVG   84 (227)
T ss_pred             EEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEE
Confidence            45555555556788899999999999999999999999999999872    3568999999987532      1122233


Q ss_pred             CChhhH-------HHHHHH-------------HHHHHHHHHhCCcce----e--eccCChHHHHH-HHHHHhCCCCCccE
Q 024315          151 FKAEDR-------VENIRR-------------IGEVAKLFADAGVIC----I--ACLISPYRKDR-DACRSMLPEGDFIE  203 (269)
Q Consensus       151 ~~~~~~-------~~~~~~-------------l~~~a~~~~~~g~~~----i--v~~~~~~~~~r-~~ar~ll~~~~~~~  203 (269)
                      |.+++.       .+++..             ...+...+...++..    .  +...++++++| ..+++++.++++  
T Consensus        85 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~l--  162 (227)
T cd03260          85 MVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEV--  162 (227)
T ss_pred             EEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCE--
Confidence            322221       111100             011223344444422    1  24556777776 689999999999  


Q ss_pred             EEEeCChhHHHhcChhhHHHHHhc
Q 024315          204 VFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       204 i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      +++|||+..++....+.+.+.+++
T Consensus       163 lllDEPt~~LD~~~~~~l~~~l~~  186 (227)
T cd03260         163 LLLDEPTSALDPISTAKIEELIAE  186 (227)
T ss_pred             EEEeCCCccCCHHHHHHHHHHHHH
Confidence            999999999999988887766654

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.54  E-value=2e-14  Score=124.13  Aligned_cols=143  Identities=17%  Similarity=0.225  Sum_probs=95.2

Q ss_pred             ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhh-----
Q 024315           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED-----  155 (269)
Q Consensus        81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~-----  155 (269)
                      ++++.+......+.+++.+++|++++|+|+||||||||++.|+|.+ .+.+|.+.++|.++.. .+..++|.+++     
T Consensus         4 ~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~p~~G~i~~~g~~~~~-~~~~i~~v~q~~~~~~   81 (213)
T cd03235           4 DLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLL-KPTSGSIRVFGKPLEK-ERKRIGYVPQRRSIDR   81 (213)
T ss_pred             cceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CCCCCEEEECCccHHH-HHhheEEecccccccc
Confidence            4555555556778899999999999999999999999999999987 4668999999875421 11111111110     


Q ss_pred             -----HHHHHH---------------H-HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCC
Q 024315          156 -----RVENIR---------------R-IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVP  209 (269)
Q Consensus       156 -----~~~~~~---------------~-l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p  209 (269)
                           ..+++.               . .......+...++..    .+...++++++| ..+++++.++++  +++|||
T Consensus        82 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l--lllDEP  159 (213)
T cd03235          82 DFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDL--LLLDEP  159 (213)
T ss_pred             CCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCE--EEEeCC
Confidence                 000000               0 011222333334321    233456666666 689999999999  999999


Q ss_pred             hhHHHhcChhhHHHHHhc
Q 024315          210 LQVCEARDPKGLYKLARE  227 (269)
Q Consensus       210 ~~~l~~R~~k~l~~~~r~  227 (269)
                      +..++....+.+.+.+++
T Consensus       160 t~~LD~~~~~~l~~~l~~  177 (213)
T cd03235         160 FAGVDPKTQEDIYELLRE  177 (213)
T ss_pred             cccCCHHHHHHHHHHHHH
Confidence            999999988887766553

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.54  E-value=4.8e-14  Score=121.59  Aligned_cols=144  Identities=21%  Similarity=0.221  Sum_probs=97.4

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc------ccccCCCCCh
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH------GLNRDLSFKA  153 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~------~l~~~~g~~~  153 (269)
                      .++.+.+......+.+++.+++|++++|+|+||||||||+++|+|.+ .+.+|.+.++|.++..      ..+..++|.+
T Consensus         4 ~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~   82 (213)
T cd03262           4 KNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLE-EPDSGTIIIDGLKLTDDKKNINELRQKVGMVF   82 (213)
T ss_pred             EEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEECCccchhHHHHHhcceEEe
Confidence            35566665556778899999999999999999999999999999988 4668999999987631      1122233322


Q ss_pred             hhH--------HHHHHH-------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEe
Q 024315          154 EDR--------VENIRR-------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMD  207 (269)
Q Consensus       154 ~~~--------~~~~~~-------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld  207 (269)
                      ++.        .+++..             .......+...++..    .+...++++++| ..+++++.++++  +++|
T Consensus        83 q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l--lllD  160 (213)
T cd03262          83 QQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKV--MLFD  160 (213)
T ss_pred             cccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCE--EEEe
Confidence            211        111100             011122333334321    233456666666 689999999999  9999


Q ss_pred             CChhHHHhcChhhHHHHHh
Q 024315          208 VPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       208 ~p~~~l~~R~~k~l~~~~r  226 (269)
                      +|+..++....+.+.+.++
T Consensus       161 EP~~~LD~~~~~~l~~~l~  179 (213)
T cd03262         161 EPTSALDPELVGEVLDVMK  179 (213)
T ss_pred             CCccCCCHHHHHHHHHHHH
Confidence            9999999888877766655

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.54  E-value=1.7e-14  Score=148.49  Aligned_cols=167  Identities=18%  Similarity=0.195  Sum_probs=115.7

Q ss_pred             ceeeccccccccccchhhhcccccccccccccccccccceEEeeCceeeccCc--------ceecCCCeEEEEEcCCCCh
Q 024315           43 SLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHKNSVDKRDRQ--------QLLQQKGCVIWITGLSGSG  114 (269)
Q Consensus        43 ~f~~idr~~~~~~~~~~~~~~~~~gagmi~~~~~~~~~~~~~~~~~v~~~~r~--------sl~~~~g~~i~l~G~sGsG  114 (269)
                      =|.+|||.|.+++..        .+.++ .   ..-..++++.++.|+|+.|+        ++++++|++++|+||||||
T Consensus       961 iF~i~dr~~~i~~~~--------~~~~~-~---~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsG 1028 (1228)
T KOG0055|consen  961 IFEILDRKPTIDPDS--------TSGGK-L---PNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSG 1028 (1228)
T ss_pred             HHHHhcCCCCCCCCC--------CCCCc-c---ccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCC
Confidence            488999998764322        01111 1   11125678888888888776        6999999999999999999


Q ss_pred             HHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhHH-------HHHHHH------HHHHHHHH------
Q 024315          115 KSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDRV-------ENIRRI------GEVAKLFA------  171 (269)
Q Consensus       115 KSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~~-------~~~~~l------~~~a~~~~------  171 (269)
                      |||+...|++.| +|..|.|.+||.+++.    .||++++++.||..       +++..-      .++.....      
T Consensus      1029 KSTvI~LLeRfY-dp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~ 1107 (1228)
T KOG0055|consen 1029 KSTVISLLERFY-DPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHN 1107 (1228)
T ss_pred             HHHHHHHHHHhc-CCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHH
Confidence            999999999988 5779999999999974    56777777776542       222110      11111111      


Q ss_pred             -----hCCccee----eccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHH
Q 024315          172 -----DAGVICI----ACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL  224 (269)
Q Consensus       172 -----~~g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~  224 (269)
                           ..|....    ...++++++|| +++|+++.+|++  +++||-+..||....+-..++
T Consensus      1108 FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkI--LLLDEATSALDseSErvVQeA 1168 (1228)
T KOG0055|consen 1108 FISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKI--LLLDEATSALDSESERVVQEA 1168 (1228)
T ss_pred             HHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCe--eeeeccchhhhhhhHHHHHHH
Confidence                 1122221    23457788888 799999999999  999999999997766554433

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.54  E-value=2.8e-14  Score=132.38  Aligned_cols=135  Identities=19%  Similarity=0.222  Sum_probs=97.1

Q ss_pred             eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-------cccCCCCChhhH-----
Q 024315           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------LNRDLSFKAEDR-----  156 (269)
Q Consensus        89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-------l~~~~g~~~~~~-----  156 (269)
                      +...++++|++++|++++|+|+||||||||+++|++++ .+.+|.|.++|.++...       .++.++|.+|+.     
T Consensus        18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~-~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~   96 (343)
T TIGR02314        18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE-RPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSS   96 (343)
T ss_pred             eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCcccccc
Confidence            46788999999999999999999999999999999987 56789999999887421       233444443321     


Q ss_pred             ---HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhc
Q 024315          157 ---VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEAR  216 (269)
Q Consensus       157 ---~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R  216 (269)
                         .+++..            ...+..++...++..    ....+|+++++| .++|+++.++++  +++|||+..++..
T Consensus        97 ~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~i--LLlDEPts~LD~~  174 (343)
T TIGR02314        97 RTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKV--LLCDEATSALDPA  174 (343)
T ss_pred             CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCE--EEEeCCcccCCHH
Confidence               111110            011223344445432    234457777777 699999999999  9999999999999


Q ss_pred             ChhhHHHHHh
Q 024315          217 DPKGLYKLAR  226 (269)
Q Consensus       217 ~~k~l~~~~r  226 (269)
                      ..+.+.+.++
T Consensus       175 t~~~i~~lL~  184 (343)
T TIGR02314       175 TTQSILELLK  184 (343)
T ss_pred             HHHHHHHHHH
Confidence            9888665544

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.54  E-value=3.2e-14  Score=129.73  Aligned_cols=144  Identities=16%  Similarity=0.166  Sum_probs=99.1

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc---cccCCCCChhhH
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---LNRDLSFKAEDR  156 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~---l~~~~g~~~~~~  156 (269)
                      .++.+.+......+.++|++++|++++|+|+||||||||+++|++.+ .+.+|.+.++|.++...   .+..++|.+++.
T Consensus         8 ~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~   86 (303)
T TIGR01288         8 VGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMI-SPDRGKITVLGEPVPSRARLARVAIGVVPQFD   86 (303)
T ss_pred             EeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEECcccHHHHhhcEEEEeccc
Confidence            46667666667889999999999999999999999999999999988 46689999999876321   122223322211


Q ss_pred             --------HHHHH---HH---------HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChh
Q 024315          157 --------VENIR---RI---------GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQ  211 (269)
Q Consensus       157 --------~~~~~---~l---------~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~  211 (269)
                              .+++.   ..         .....++...++..    .+...++++++| ..+++++.++++  +++|+|+.
T Consensus        87 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l--llLDEPt~  164 (303)
T TIGR01288        87 NLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQL--LILDEPTT  164 (303)
T ss_pred             cCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCCc
Confidence                    11111   00         01112233334322    233456666776 699999999999  99999999


Q ss_pred             HHHhcChhhHHHHHh
Q 024315          212 VCEARDPKGLYKLAR  226 (269)
Q Consensus       212 ~l~~R~~k~l~~~~r  226 (269)
                      .++...++.+++.++
T Consensus       165 gLD~~~~~~l~~~l~  179 (303)
T TIGR01288       165 GLDPHARHLIWERLR  179 (303)
T ss_pred             CCCHHHHHHHHHHHH
Confidence            999998887766554

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.54  E-value=3.6e-14  Score=122.13  Aligned_cols=144  Identities=19%  Similarity=0.171  Sum_probs=97.8

Q ss_pred             ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--ccccCCCCChhhH--
Q 024315           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--GLNRDLSFKAEDR--  156 (269)
Q Consensus        81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--~l~~~~g~~~~~~--  156 (269)
                      ++.+.+......+..++++++|++++|+|+||||||||++.|+|.++ +.+|.+.++|.++..  ..+..++|.+++.  
T Consensus         5 ~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~   83 (208)
T cd03268           5 DLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK-PDSGEITFDGKSYQKNIEALRRIGALIEAPGF   83 (208)
T ss_pred             EEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-CCceEEEECCCcccchHHHHhhEEEecCCCcc
Confidence            45555555667888999999999999999999999999999999884 668999999987632  1111222222211  


Q ss_pred             ------HHHHHH--------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcC
Q 024315          157 ------VENIRR--------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD  217 (269)
Q Consensus       157 ------~~~~~~--------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~  217 (269)
                            .+++..        -..+...+...++..    .+...++++++| ..+++++.++++  +++|+|+..++...
T Consensus        84 ~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l--lllDEPt~~LD~~~  161 (208)
T cd03268          84 YPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDL--LILDEPTNGLDPDG  161 (208)
T ss_pred             CccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCE--EEECCCcccCCHHH
Confidence                  111110        011222333334422    123356666666 689999999998  99999999999988


Q ss_pred             hhhHHHHHhc
Q 024315          218 PKGLYKLARE  227 (269)
Q Consensus       218 ~k~l~~~~r~  227 (269)
                      .+.+++.+++
T Consensus       162 ~~~l~~~l~~  171 (208)
T cd03268         162 IKELRELILS  171 (208)
T ss_pred             HHHHHHHHHH
Confidence            8887766553

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.54  E-value=5.2e-14  Score=123.33  Aligned_cols=145  Identities=18%  Similarity=0.210  Sum_probs=98.4

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-----cccCCCCChh
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAE  154 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-----l~~~~g~~~~  154 (269)
                      .++.+.+......+.+++++++|++++|+|+||||||||+++|+|.++ +.+|.|.++|.++...     .+..++|.++
T Consensus         4 ~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q   82 (236)
T cd03219           4 RGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR-PTSGSVLFDGEDITGLPPHEIARLGIGRTFQ   82 (236)
T ss_pred             eeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC-CCCceEEECCEECCCCCHHHHHhcCEEEEec
Confidence            355666655567788999999999999999999999999999999884 6689999999876421     1112222222


Q ss_pred             hH--------HHHHHH----------------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCC
Q 024315          155 DR--------VENIRR----------------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEG  199 (269)
Q Consensus       155 ~~--------~~~~~~----------------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~  199 (269)
                      +.        .+.+..                      ...+...+...++..    .+...++++++| ..+++++.++
T Consensus        83 ~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p  162 (236)
T cd03219          83 IPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDP  162 (236)
T ss_pred             ccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence            10        111100                      001222333444422    223356666666 6899999999


Q ss_pred             CccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          200 DFIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       200 ~~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      ++  +++|||+..++....+.+++.+++
T Consensus       163 ~l--lllDEPt~~LD~~~~~~l~~~l~~  188 (236)
T cd03219         163 KL--LLLDEPAAGLNPEETEELAELIRE  188 (236)
T ss_pred             CE--EEEcCCcccCCHHHHHHHHHHHHH
Confidence            99  999999999999988887766553

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.54  E-value=2.7e-14  Score=120.74  Aligned_cols=110  Identities=19%  Similarity=0.140  Sum_probs=85.3

Q ss_pred             ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHH
Q 024315           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENI  160 (269)
Q Consensus        81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~  160 (269)
                      ++...++....... ++.+++|++++|+|+||||||||++.|++.+ .+.+|.|.++|..+        ++.++...   
T Consensus         5 ~l~~~~~~~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i--------~~~~q~~~---   71 (177)
T cd03222           5 DCVKRYGVFFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQL-IPNGDNDEWDGITP--------VYKPQYID---   71 (177)
T ss_pred             CeEEEECCEEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCC-CCCCcEEEECCEEE--------EEEcccCC---
Confidence            45555655655555 4899999999999999999999999999988 46689999998654        23332210   


Q ss_pred             HHHHHHHHHHHhCCcceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315          161 RRIGEVAKLFADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       161 ~~l~~~a~~~~~~g~~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                                           .+.++++| ..+++++.++++  +++|||+..++....+.+.+.++
T Consensus        72 ---------------------LSgGq~qrv~laral~~~p~l--llLDEPts~LD~~~~~~l~~~l~  115 (177)
T cd03222          72 ---------------------LSGGELQRVAIAAALLRNATF--YLFDEPSAYLDIEQRLNAARAIR  115 (177)
T ss_pred             ---------------------CCHHHHHHHHHHHHHhcCCCE--EEEECCcccCCHHHHHHHHHHHH
Confidence                                 45566665 689999999998  99999999999988887665554

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.54  E-value=2.9e-14  Score=132.73  Aligned_cols=144  Identities=21%  Similarity=0.242  Sum_probs=100.0

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--ccccCCCCChhhH-
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--GLNRDLSFKAEDR-  156 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--~l~~~~g~~~~~~-  156 (269)
                      .++.+.+......+++++.+.+|++++|+||||||||||+++|+|.+ .+.+|.|+++|.++..  ..++.++|..|+. 
T Consensus         6 ~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~-~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~   84 (353)
T PRK10851          6 ANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLE-HQTSGHIRFHGTDVSRLHARDRKVGFVFQHYA   84 (353)
T ss_pred             EEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEECCCCCHHHCCEEEEecCcc
Confidence            35566666667788999999999999999999999999999999987 5678999999988742  1112223222211 


Q ss_pred             -------HHHHHH----------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeC
Q 024315          157 -------VENIRR----------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDV  208 (269)
Q Consensus       157 -------~~~~~~----------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~  208 (269)
                             .+++..                ...+...+...++..    .+..+++++++| ..+++++.++++  +++|+
T Consensus        85 l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~l--lLLDE  162 (353)
T PRK10851         85 LFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQI--LLLDE  162 (353)
T ss_pred             cCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeC
Confidence                   111110                012223344444422    233456777777 699999999999  99999


Q ss_pred             ChhHHHhcChhhHHHHHh
Q 024315          209 PLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       209 p~~~l~~R~~k~l~~~~r  226 (269)
                      |+..++...++.+.+.++
T Consensus       163 P~s~LD~~~r~~l~~~L~  180 (353)
T PRK10851        163 PFGALDAQVRKELRRWLR  180 (353)
T ss_pred             CCccCCHHHHHHHHHHHH
Confidence            999999998887665544

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.54  E-value=2e-14  Score=117.36  Aligned_cols=110  Identities=18%  Similarity=0.170  Sum_probs=86.8

Q ss_pred             ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHH
Q 024315           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENI  160 (269)
Q Consensus        81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~  160 (269)
                      ++.+.+......+.+++.+++|++++|+|+||||||||+++|++.+ ++.+|.+.+++..       .++|.++      
T Consensus         5 ~l~~~~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~-~~~~G~i~~~~~~-------~i~~~~~------   70 (144)
T cd03221           5 NLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGEL-EPDEGIVTWGSTV-------KIGYFEQ------   70 (144)
T ss_pred             EEEEEECCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCC-CCCceEEEECCeE-------EEEEEcc------
Confidence            4444444445677889999999999999999999999999999987 4678999998842       1233333      


Q ss_pred             HHHHHHHHHHHhCCcceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          161 RRIGEVAKLFADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       161 ~~l~~~a~~~~~~g~~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                                           .+.++++| ..+++++.++++  +++|+|+..++....+.+.+.+++
T Consensus        71 ---------------------lS~G~~~rv~laral~~~p~i--lllDEP~~~LD~~~~~~l~~~l~~  115 (144)
T cd03221          71 ---------------------LSGGEKMRLALAKLLLENPNL--LLLDEPTNHLDLESIEALEEALKE  115 (144)
T ss_pred             ---------------------CCHHHHHHHHHHHHHhcCCCE--EEEeCCccCCCHHHHHHHHHHHHH
Confidence                                 44555555 689999999999  999999999999998888777764

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.54  E-value=4.2e-14  Score=124.46  Aligned_cols=143  Identities=19%  Similarity=0.250  Sum_probs=95.7

Q ss_pred             ceEEeeC-ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-------ccccCCCCC
Q 024315           81 NILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-------GLNRDLSFK  152 (269)
Q Consensus        81 ~~~~~~~-~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-------~l~~~~g~~  152 (269)
                      ++.+.+. .....+.+++++++|++++|+|+||||||||+++|++.+ .+.+|.|.++|.++..       .++..++|.
T Consensus         6 ~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v   84 (243)
T TIGR02315         6 NLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLV-EPSSGSILLEGTDITKLRGKKLRKLRRRIGMI   84 (243)
T ss_pred             eeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-CCCccEEEECCEEhhhCCHHHHHHHHhheEEE
Confidence            4555544 445678889999999999999999999999999999987 4668999999977532       012222222


Q ss_pred             hhhH--------HHHHH--------------------HHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCC
Q 024315          153 AEDR--------VENIR--------------------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEG  199 (269)
Q Consensus       153 ~~~~--------~~~~~--------------------~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~  199 (269)
                      +++.        .+++.                    ....+...+...++..    .+...++++++| ..+++++.++
T Consensus        85 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p  164 (243)
T TIGR02315        85 FQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQP  164 (243)
T ss_pred             cCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence            2210        01110                    0011222333334422    233456666666 6999999999


Q ss_pred             CccEEEEeCChhHHHhcChhhHHHHHh
Q 024315          200 DFIEVFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       200 ~~~~i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      ++  +++|||+..++....+.+++.++
T Consensus       165 ~l--lllDEPt~~LD~~~~~~l~~~l~  189 (243)
T TIGR02315       165 DL--ILADEPIASLDPKTSKQVMDYLK  189 (243)
T ss_pred             CE--EEEeCCcccCCHHHHHHHHHHHH
Confidence            99  99999999999988877766554

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.54  E-value=2.4e-14  Score=124.02  Aligned_cols=144  Identities=18%  Similarity=0.201  Sum_probs=96.9

Q ss_pred             ceEEeeCce----eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc---ccccCCCCCh
Q 024315           81 NILWHKNSV----DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH---GLNRDLSFKA  153 (269)
Q Consensus        81 ~~~~~~~~v----~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~---~l~~~~g~~~  153 (269)
                      ++.+.+...    ...++.++.+++|++++|+|+||||||||+++|++.+ ++.+|.|.++|.++..   .++..++|.+
T Consensus         6 ~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~i~~~~   84 (218)
T cd03266           6 ALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLL-EPDAGFATVDGFDVVKEPAEARRRLGFVS   84 (218)
T ss_pred             EEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc-CCCCceEEECCEEcccCHHHHHhhEEEec
Confidence            455555433    5678889999999999999999999999999999987 4668999999977642   1112222222


Q ss_pred             hhH--------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeC
Q 024315          154 EDR--------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDV  208 (269)
Q Consensus       154 ~~~--------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~  208 (269)
                      ++.        .+++..            ...+...+...++..    .+...++++++| ..+++++.++++  +++|+
T Consensus        85 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~i--lllDE  162 (218)
T cd03266          85 DSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPV--LLLDE  162 (218)
T ss_pred             CCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCE--EEEcC
Confidence            211        111110            011222334444422    223356666666 689999999999  99999


Q ss_pred             ChhHHHhcChhhHHHHHhc
Q 024315          209 PLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       209 p~~~l~~R~~k~l~~~~r~  227 (269)
                      |+..++....+.+++.+++
T Consensus       163 Pt~~LD~~~~~~l~~~l~~  181 (218)
T cd03266         163 PTTGLDVMATRALREFIRQ  181 (218)
T ss_pred             CCcCCCHHHHHHHHHHHHH
Confidence            9999999988887766553

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.54  E-value=4e-14  Score=127.01  Aligned_cols=146  Identities=20%  Similarity=0.202  Sum_probs=98.1

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc----CCccEEEECCeecCc------ccccCC
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH------GLNRDL  149 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~----~~~g~i~l~g~~~~~------~l~~~~  149 (269)
                      .++.+.+......++++|++++|++++|+|+||||||||++.|++.++.    +.+|.+.++|.++..      .++..+
T Consensus        17 ~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i   96 (269)
T PRK14259         17 QNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRI   96 (269)
T ss_pred             EeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhce
Confidence            5666666666678899999999999999999999999999999998753    468999999987531      112223


Q ss_pred             CCChhhH-------HHHHHH----------H-HHHHHHHHhCCc--------ceeeccCChHHHHH-HHHHHhCCCCCcc
Q 024315          150 SFKAEDR-------VENIRR----------I-GEVAKLFADAGV--------ICIACLISPYRKDR-DACRSMLPEGDFI  202 (269)
Q Consensus       150 g~~~~~~-------~~~~~~----------l-~~~a~~~~~~g~--------~~iv~~~~~~~~~r-~~ar~ll~~~~~~  202 (269)
                      +|.+++.       .+++..          . ......+...++        ...+...++++++| ..+++++.++++ 
T Consensus        97 ~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l-  175 (269)
T PRK14259         97 GMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEV-  175 (269)
T ss_pred             EEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCE-
Confidence            3333221       111110          0 011112222222        11123356666666 689999999999 


Q ss_pred             EEEEeCChhHHHhcChhhHHHHHhc
Q 024315          203 EVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       203 ~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                       +++|||+..++....+.+++.+++
T Consensus       176 -llLDEPt~gLD~~~~~~l~~~l~~  199 (269)
T PRK14259        176 -ILMDEPCSALDPISTLKIEETMHE  199 (269)
T ss_pred             -EEEcCCCccCCHHHHHHHHHHHHH
Confidence             999999999999888887766553

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.54  E-value=3.4e-15  Score=126.74  Aligned_cols=141  Identities=15%  Similarity=0.251  Sum_probs=101.7

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-----ccccCCCCChh
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----GLNRDLSFKAE  154 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-----~l~~~~g~~~~  154 (269)
                      .++...+.......++|+.+++||+++|.||||+||||.+..+.|+. .+.+|.|++++.++.+     ..+.++||-+|
T Consensus         8 ~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv-~~d~G~i~ld~~diT~lPm~~RArlGigYLpQ   86 (243)
T COG1137           8 ENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLV-RPDSGKILLDDEDITKLPMHKRARLGIGYLPQ   86 (243)
T ss_pred             hhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEE-ecCCceEEECCcccccCChHHHhhcCcccccc
Confidence            45555666777888999999999999999999999999999999988 5779999999999874     33445677776


Q ss_pred             hHH--------HHHHHH--------------HHHHHHHHhCCccee----eccCChHHHHH-HHHHHhCCCCCccEEEEe
Q 024315          155 DRV--------ENIRRI--------------GEVAKLFADAGVICI----ACLISPYRKDR-DACRSMLPEGDFIEVFMD  207 (269)
Q Consensus       155 ~~~--------~~~~~l--------------~~~a~~~~~~g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld  207 (269)
                      +-.        +++..+              .+.-.++.++.+..+    ...++++++.| +++|+++.+|.|  +++|
T Consensus        87 E~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~f--iLLD  164 (243)
T COG1137          87 EASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKF--ILLD  164 (243)
T ss_pred             cchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCE--EEec
Confidence            531        111111              011233444444222    33446666655 799999999999  9999


Q ss_pred             CChhHHHhcChhhHHH
Q 024315          208 VPLQVCEARDPKGLYK  223 (269)
Q Consensus       208 ~p~~~l~~R~~k~l~~  223 (269)
                      +|++.+++-....+.+
T Consensus       165 EPFAGVDPiaV~dIq~  180 (243)
T COG1137         165 EPFAGVDPIAVIDIQR  180 (243)
T ss_pred             CCccCCCchhHHHHHH
Confidence            9999998876655443

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.53  E-value=3.8e-14  Score=131.54  Aligned_cols=144  Identities=17%  Similarity=0.223  Sum_probs=99.1

Q ss_pred             cceEEeeC----ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-------ccccC
Q 024315           80 TNILWHKN----SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-------GLNRD  148 (269)
Q Consensus        80 ~~~~~~~~----~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-------~l~~~  148 (269)
                      .++++.+.    .....++++|.+++|++++|+|+||||||||+++|++.+ .+.+|.|.++|.++..       ..+..
T Consensus         5 ~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~-~p~~G~I~~~g~~i~~~~~~~~~~~~~~   83 (343)
T PRK11153          5 KNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLE-RPTSGRVLVDGQDLTALSEKELRKARRQ   83 (343)
T ss_pred             EeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCceEEEECCEECCcCCHHHHHHHhcC
Confidence            35555554    356778899999999999999999999999999999988 4678999999987642       11223


Q ss_pred             CCCChhhH--------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccE
Q 024315          149 LSFKAEDR--------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIE  203 (269)
Q Consensus       149 ~g~~~~~~--------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~  203 (269)
                      ++|.+++.        .+++..            .......+...++..    .+..+++++++| ..+++++.++++  
T Consensus        84 ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~i--  161 (343)
T PRK11153         84 IGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKV--  161 (343)
T ss_pred             EEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCE--
Confidence            33332211        111110            011223344444432    233456777777 689999999999  


Q ss_pred             EEEeCChhHHHhcChhhHHHHHh
Q 024315          204 VFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       204 i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      +++|||+..++....+.+++.++
T Consensus       162 LlLDEPts~LD~~~~~~l~~~L~  184 (343)
T PRK11153        162 LLCDEATSALDPATTRSILELLK  184 (343)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHH
Confidence            99999999999998888766554

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.53  E-value=4.3e-14  Score=123.53  Aligned_cols=144  Identities=16%  Similarity=0.248  Sum_probs=97.5

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----c-cccCCCCChh
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----G-LNRDLSFKAE  154 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~-l~~~~g~~~~  154 (269)
                      .++.+.+......+++++.+.+|++++|+|+||||||||+++|++.+ .+.+|.+.++|.++..    . .+..++|.++
T Consensus         4 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q   82 (232)
T cd03218           4 ENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLV-KPDSGKILLDGQDITKLPMHKRARLGIGYLPQ   82 (232)
T ss_pred             EEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEecccCCHhHHHhccEEEecC
Confidence            35556655556788999999999999999999999999999999988 4668999999986532    1 1122233222


Q ss_pred             hH--------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCC
Q 024315          155 DR--------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVP  209 (269)
Q Consensus       155 ~~--------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p  209 (269)
                      +.        .+++..            ...+...+...++..    .+...++++++| ..+++++.++++  +++|+|
T Consensus        83 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l--lllDEP  160 (232)
T cd03218          83 EASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKF--LLLDEP  160 (232)
T ss_pred             CccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEecCC
Confidence            11        111110            001122333334422    123356666666 689999999999  999999


Q ss_pred             hhHHHhcChhhHHHHHh
Q 024315          210 LQVCEARDPKGLYKLAR  226 (269)
Q Consensus       210 ~~~l~~R~~k~l~~~~r  226 (269)
                      +..++....+.+++.++
T Consensus       161 t~~LD~~~~~~~~~~l~  177 (232)
T cd03218         161 FAGVDPIAVQDIQKIIK  177 (232)
T ss_pred             cccCCHHHHHHHHHHHH
Confidence            99999998888776554

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.53  E-value=1.3e-14  Score=124.11  Aligned_cols=62  Identities=31%  Similarity=0.254  Sum_probs=56.1

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~  142 (269)
                      .|+++.-......+.++++.++||+++|+||||+|||||+|.|.|.+ .+.+|.+.++|.++.
T Consensus         5 ~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel-~p~~G~v~~~g~~l~   66 (259)
T COG4559           5 ENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGEL-SPDSGEVTLNGVPLN   66 (259)
T ss_pred             eeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCcc-CCCCCeEeeCCcChh
Confidence            56777777888899999999999999999999999999999999988 577899999998765

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.53  E-value=5e-14  Score=121.58  Aligned_cols=144  Identities=19%  Similarity=0.227  Sum_probs=96.9

Q ss_pred             ceEEeeCc-eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-------cccCCCCC
Q 024315           81 NILWHKNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------LNRDLSFK  152 (269)
Q Consensus        81 ~~~~~~~~-v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-------l~~~~g~~  152 (269)
                      ++.+.+.. ....++.++++.+|++++|+|+||||||||++.|+|.+ ++.+|.|.++|.++...       .+..++|.
T Consensus         5 ~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v   83 (214)
T cd03292           5 NVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEE-LPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVV   83 (214)
T ss_pred             EEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEEcccCCHHHHHHHHHheEEE
Confidence            45555532 45678889999999999999999999999999999987 46689999999876420       11222332


Q ss_pred             hhhH--------HHHHHH-----------H-HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEe
Q 024315          153 AEDR--------VENIRR-----------I-GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMD  207 (269)
Q Consensus       153 ~~~~--------~~~~~~-----------l-~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld  207 (269)
                      +++.        .+++..           . ..+...+...++..    .+...++++++| ..+++++.++++  +++|
T Consensus        84 ~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l--lllD  161 (214)
T cd03292          84 FQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTI--LIAD  161 (214)
T ss_pred             ecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCE--EEEe
Confidence            2211        111110           0 11223333444422    223456666666 689999999999  9999


Q ss_pred             CChhHHHhcChhhHHHHHhc
Q 024315          208 VPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       208 ~p~~~l~~R~~k~l~~~~r~  227 (269)
                      ||+..++....+.+++.+++
T Consensus       162 EPt~~LD~~~~~~~~~~l~~  181 (214)
T cd03292         162 EPTGNLDPDTTWEIMNLLKK  181 (214)
T ss_pred             CCCCcCCHHHHHHHHHHHHH
Confidence            99999999888887766553

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.53  E-value=5.6e-14  Score=126.52  Aligned_cols=124  Identities=22%  Similarity=0.278  Sum_probs=95.2

Q ss_pred             CceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHHHHHHHH
Q 024315           87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEV  166 (269)
Q Consensus        87 ~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~l~~~  166 (269)
                      +.+--..+++|.+..||+..|+|.||||||||.++|.+++ +|.+|.|+++|.++.       .++..++++.+++  .+
T Consensus        39 g~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLi-ept~G~ilv~g~di~-------~~~~~~Lr~~Rr~--~~  108 (386)
T COG4175          39 GLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLI-EPTRGEILVDGKDIA-------KLSAAELRELRRK--KI  108 (386)
T ss_pred             CcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccC-CCCCceEEECCcchh-------cCCHHHHHHHHhh--hh
Confidence            4566678899999999999999999999999999999977 688999999999986       5555555544333  44


Q ss_pred             HHHHHhCCcce-----------------------------------------eeccCChHHHHH-HHHHHhCCCCCccEE
Q 024315          167 AKLFADAGVIC-----------------------------------------IACLISPYRKDR-DACRSMLPEGDFIEV  204 (269)
Q Consensus       167 a~~~~~~g~~~-----------------------------------------iv~~~~~~~~~r-~~ar~ll~~~~~~~i  204 (269)
                      ++.||.+++..                                         .+..++++.+|| -.+|++..++++  +
T Consensus       109 sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~I--l  186 (386)
T COG4175         109 SMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDI--L  186 (386)
T ss_pred             hhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCE--E
Confidence            55555554411                                         223345566777 599999999999  9


Q ss_pred             EEeCChhHHHhcChhhHH
Q 024315          205 FMDVPLQVCEARDPKGLY  222 (269)
Q Consensus       205 ~ld~p~~~l~~R~~k~l~  222 (269)
                      ++|+|++.+++-.+..+.
T Consensus       187 LMDEaFSALDPLIR~~mQ  204 (386)
T COG4175         187 LMDEAFSALDPLIRTEMQ  204 (386)
T ss_pred             EecCchhhcChHHHHHHH
Confidence            999999999987776644

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.53  E-value=1.9e-14  Score=122.96  Aligned_cols=131  Identities=18%  Similarity=0.200  Sum_probs=90.8

Q ss_pred             eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhc-cCCccEEEECCeecCc-ccccCCCCChhhHHHHH-HHHHH
Q 024315           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDNCRH-GLNRDLSFKAEDRVENI-RRIGE  165 (269)
Q Consensus        89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~-~~~~g~i~l~g~~~~~-~l~~~~g~~~~~~~~~~-~~l~~  165 (269)
                      .......++++++|++++|+|+||||||||++.|++.++ .+.+|.+.++|.++.. ..+..++|.+++..-.. ..+.+
T Consensus        22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~  101 (194)
T cd03213          22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRE  101 (194)
T ss_pred             ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHH
Confidence            446778899999999999999999999999999999872 4568999999988643 22233444443321000 00111


Q ss_pred             HHHHHHhCCcceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          166 VAKLFADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       166 ~a~~~~~~g~~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      .........      ..++++++| ..+++++.++++  +++|+|+..++....+.+++.+++
T Consensus       102 ~i~~~~~~~------~LS~G~~qrv~laral~~~p~i--lllDEP~~~LD~~~~~~l~~~l~~  156 (194)
T cd03213         102 TLMFAAKLR------GLSGGERKRVSIALELVSNPSL--LFLDEPTSGLDSSSALQVMSLLRR  156 (194)
T ss_pred             HHHHHHHhc------cCCHHHHHHHHHHHHHHcCCCE--EEEeCCCcCCCHHHHHHHHHHHHH
Confidence            100000000      445666666 699999999998  999999999999998888776654

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.53  E-value=3.5e-14  Score=132.97  Aligned_cols=144  Identities=17%  Similarity=0.111  Sum_probs=99.4

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--ccccCCCCChhhH-
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--GLNRDLSFKAEDR-  156 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--~l~~~~g~~~~~~-  156 (269)
                      .++.+.+......+.+++++.+|++++|+|+||||||||+++|+|.+ .+.+|.|.++|.++..  ..++.++|..|+. 
T Consensus         7 ~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~-~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~   85 (369)
T PRK11000          7 RNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE-DITSGDLFIGEKRMNDVPPAERGVGMVFQSYA   85 (369)
T ss_pred             EEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCceEEEECCEECCCCCHhHCCEEEEeCCcc
Confidence            45666666666788999999999999999999999999999999988 4678999999987642  1111223222211 


Q ss_pred             -------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhH
Q 024315          157 -------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV  212 (269)
Q Consensus       157 -------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~  212 (269)
                             .+++..            ...+...+...++..    .+..+|+++++| ..+++++.++++  +++|||+..
T Consensus        86 l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~l--LLLDEPts~  163 (369)
T PRK11000         86 LYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSV--FLLDEPLSN  163 (369)
T ss_pred             cCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCccc
Confidence                   111110            011223344444432    233457777777 699999999999  999999999


Q ss_pred             HHhcChhhHHHHHh
Q 024315          213 CEARDPKGLYKLAR  226 (269)
Q Consensus       213 l~~R~~k~l~~~~r  226 (269)
                      ++...++.+.+.++
T Consensus       164 LD~~~~~~l~~~L~  177 (369)
T PRK11000        164 LDAALRVQMRIEIS  177 (369)
T ss_pred             CCHHHHHHHHHHHH
Confidence            99988877654443

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.53  E-value=6e-14  Score=123.43  Aligned_cols=144  Identities=20%  Similarity=0.237  Sum_probs=97.5

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--ccccCCCCChhhH-
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--GLNRDLSFKAEDR-  156 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--~l~~~~g~~~~~~-  156 (269)
                      .++.+.+......+++++++.+|++++|+|+||||||||+++|++.+ .+.+|.|.++|.++..  ..+..++|.+++. 
T Consensus         6 ~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~   84 (239)
T cd03296           6 RNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLE-RPDSGTILFGGEDATDVPVQERNVGFVFQHYA   84 (239)
T ss_pred             EeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEECCcCCccccceEEEecCCc
Confidence            45666665666788899999999999999999999999999999987 4668999999987532  1111122222110 


Q ss_pred             -------HHHHHH----------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeC
Q 024315          157 -------VENIRR----------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDV  208 (269)
Q Consensus       157 -------~~~~~~----------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~  208 (269)
                             .+++..                .......+...++..    .+...++++++| ..+++++.++++  +++||
T Consensus        85 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l--lllDE  162 (239)
T cd03296          85 LFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKV--LLLDE  162 (239)
T ss_pred             ccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCE--EEEcC
Confidence                   111100                001122333344422    223356666666 689999999999  99999


Q ss_pred             ChhHHHhcChhhHHHHHh
Q 024315          209 PLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       209 p~~~l~~R~~k~l~~~~r  226 (269)
                      |+..++....+.+++.++
T Consensus       163 P~~~LD~~~~~~l~~~l~  180 (239)
T cd03296         163 PFGALDAKVRKELRRWLR  180 (239)
T ss_pred             CcccCCHHHHHHHHHHHH
Confidence            999999999888776654

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.53  E-value=3.8e-14  Score=132.38  Aligned_cols=144  Identities=19%  Similarity=0.196  Sum_probs=100.8

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCc--cEEEECCeecCcc--cccCCCCChhh
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGK--LTYILDGDNCRHG--LNRDLSFKAED  155 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~--g~i~l~g~~~~~~--l~~~~g~~~~~  155 (269)
                      .++++.+......+++++++.+|++++|+||||||||||+++|++++ .+.+  |.|.++|.++...  ..+.++|..|+
T Consensus         9 ~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~-~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~   87 (362)
T TIGR03258         9 DHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFV-KAAGLTGRIAIADRDLTHAPPHKRGLALLFQN   87 (362)
T ss_pred             EEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCCEEEEECCEECCCCCHHHCCEEEEECC
Confidence            45666666667788999999999999999999999999999999987 5668  9999999876421  11223333222


Q ss_pred             H--------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCCh
Q 024315          156 R--------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPL  210 (269)
Q Consensus       156 ~--------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~  210 (269)
                      .        .+++..            ...+...+...++..    .+..+++++++| ..+|+++.++++  +++|+|+
T Consensus        88 ~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~l--lLLDEP~  165 (362)
T TIGR03258        88 YALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDV--LLLDEPL  165 (362)
T ss_pred             cccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEcCcc
Confidence            1        111110            011222333334422    234457777777 699999999999  9999999


Q ss_pred             hHHHhcChhhHHHHHh
Q 024315          211 QVCEARDPKGLYKLAR  226 (269)
Q Consensus       211 ~~l~~R~~k~l~~~~r  226 (269)
                      ..++...++.+.+.++
T Consensus       166 s~LD~~~r~~l~~~l~  181 (362)
T TIGR03258       166 SALDANIRANMREEIA  181 (362)
T ss_pred             ccCCHHHHHHHHHHHH
Confidence            9999998888765544

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.53  E-value=2.6e-14  Score=143.64  Aligned_cols=134  Identities=22%  Similarity=0.193  Sum_probs=95.7

Q ss_pred             eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhH-------HHH
Q 024315           91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDR-------VEN  159 (269)
Q Consensus        91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~-------~~~  159 (269)
                      ..++.++++++|+.++|+|+||||||||++.|+|.+ +|.+|.|.+||.++..    .+++.+++.+|+.       +++
T Consensus       468 vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~-~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eN  546 (686)
T TIGR03797       468 ILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFE-TPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFEN  546 (686)
T ss_pred             ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHH
Confidence            456679999999999999999999999999999988 5779999999998763    3444444444432       122


Q ss_pred             HHH-----HHHHHHHHHhC-----------Ccce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcCh
Q 024315          160 IRR-----IGEVAKLFADA-----------GVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDP  218 (269)
Q Consensus       160 ~~~-----l~~~a~~~~~~-----------g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~  218 (269)
                      +..     -.++.......           |...    -....+++++|| ..+|+++.++++  +++|||++.+|....
T Consensus       547 i~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~i--LiLDEpTS~LD~~te  624 (686)
T TIGR03797       547 IAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRI--LLFDEATSALDNRTQ  624 (686)
T ss_pred             HhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCE--EEEeCCccCCCHHHH
Confidence            110     00111111111           2221    123457788877 799999999999  999999999999998


Q ss_pred             hhHHHHHhc
Q 024315          219 KGLYKLARE  227 (269)
Q Consensus       219 k~l~~~~r~  227 (269)
                      +.+++.++.
T Consensus       625 ~~i~~~L~~  633 (686)
T TIGR03797       625 AIVSESLER  633 (686)
T ss_pred             HHHHHHHHH
Confidence            888877665

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.53  E-value=1.6e-14  Score=123.93  Aligned_cols=137  Identities=18%  Similarity=0.138  Sum_probs=94.4

Q ss_pred             ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhh-ccCCccEEEECCeecCcc-----cccCCCCChh
Q 024315           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHG-----LNRDLSFKAE  154 (269)
Q Consensus        81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l-~~~~~g~i~l~g~~~~~~-----l~~~~g~~~~  154 (269)
                      ++.+.+......++.++.+.+|++++|+|+||||||||++.|++.+ ..+.+|.+.++|.++...     .+..++|.++
T Consensus         5 ~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q   84 (200)
T cd03217           5 DLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQ   84 (200)
T ss_pred             EEEEEeCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeec
Confidence            4555554556778899999999999999999999999999999985 256789999999887531     1122444444


Q ss_pred             hHHHHHHHHHHHHHHHHhCCcceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315          155 DRVENIRRIGEVAKLFADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       155 ~~~~~~~~l~~~a~~~~~~g~~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      +..- +... .+...+     .......++++++| ..+++++.++++  +++|+|+..++....+.+.+.++
T Consensus        85 ~~~~-~~~~-~~~~~l-----~~~~~~LS~G~~qrv~laral~~~p~i--lllDEPt~~LD~~~~~~l~~~L~  148 (200)
T cd03217          85 YPPE-IPGV-KNADFL-----RYVNEGFSGGEKKRNEILQLLLLEPDL--AILDEPDSGLDIDALRLVAEVIN  148 (200)
T ss_pred             Chhh-ccCc-cHHHHH-----hhccccCCHHHHHHHHHHHHHhcCCCE--EEEeCCCccCCHHHHHHHHHHHH
Confidence            3211 0000 000001     11122455666666 689999999999  99999999999888777666554

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.53  E-value=5.3e-14  Score=128.24  Aligned_cols=136  Identities=19%  Similarity=0.227  Sum_probs=93.8

Q ss_pred             ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc---ccccCCCCChhhH--------
Q 024315           88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH---GLNRDLSFKAEDR--------  156 (269)
Q Consensus        88 ~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~---~l~~~~g~~~~~~--------  156 (269)
                      .....+++++.+++|++++|+||||||||||+++|+|++ .+.+|.|.++|.++..   .++..++|.+++.        
T Consensus         5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv   83 (302)
T TIGR01188         5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLL-RPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTG   83 (302)
T ss_pred             CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcH
Confidence            345678889999999999999999999999999999988 4678999999987642   1122233333221        


Q ss_pred             HHHHHH---H---------HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChh
Q 024315          157 VENIRR---I---------GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPK  219 (269)
Q Consensus       157 ~~~~~~---l---------~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k  219 (269)
                      .+++..   .         ......+...++..    .+...++++++| ..+++++.++++  +++|||+..++...++
T Consensus        84 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l--llLDEPt~gLD~~~~~  161 (302)
T TIGR01188        84 RENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDV--LFLDEPTTGLDPRTRR  161 (302)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCCcCCCHHHHH
Confidence            111111   0         11223344444422    233456666666 699999999999  9999999999998887


Q ss_pred             hHHHHHh
Q 024315          220 GLYKLAR  226 (269)
Q Consensus       220 ~l~~~~r  226 (269)
                      .+.+.++
T Consensus       162 ~l~~~l~  168 (302)
T TIGR01188       162 AIWDYIR  168 (302)
T ss_pred             HHHHHHH
Confidence            7665443

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.53  E-value=6.3e-14  Score=123.30  Aligned_cols=144  Identities=20%  Similarity=0.234  Sum_probs=98.3

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc------ccccCCCCCh
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH------GLNRDLSFKA  153 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~------~l~~~~g~~~  153 (269)
                      .++.+.+......+++++++.+|++++|+|+||||||||+++|+|.+ .+.+|.|.++|.++..      ..+..++|.+
T Consensus         5 ~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~   83 (240)
T PRK09493          5 KNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLE-EITSGDLIVDGLKVNDPKVDERLIRQEAGMVF   83 (240)
T ss_pred             EeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEECCcCChhHHHHhhceEEEe
Confidence            45666665556788899999999999999999999999999999987 4668999999987642      1122223222


Q ss_pred             hhH--------HHHHHH------------H-HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEe
Q 024315          154 EDR--------VENIRR------------I-GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMD  207 (269)
Q Consensus       154 ~~~--------~~~~~~------------l-~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld  207 (269)
                      ++.        .+.+..            . ..+...+...++..    .+...++++++| ..+++++.++++  +++|
T Consensus        84 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~l--lllD  161 (240)
T PRK09493         84 QQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKL--MLFD  161 (240)
T ss_pred             cccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCE--EEEc
Confidence            211        111100            0 11223334444422    123346666666 689999999998  9999


Q ss_pred             CChhHHHhcChhhHHHHHh
Q 024315          208 VPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       208 ~p~~~l~~R~~k~l~~~~r  226 (269)
                      +|+..++....+.+++.++
T Consensus       162 EP~~~LD~~~~~~l~~~l~  180 (240)
T PRK09493        162 EPTSALDPELRHEVLKVMQ  180 (240)
T ss_pred             CCcccCCHHHHHHHHHHHH
Confidence            9999999998888776654

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.53  E-value=3e-14  Score=121.03  Aligned_cols=135  Identities=17%  Similarity=0.232  Sum_probs=92.4

Q ss_pred             eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc------ccccCCCCChhhH-------
Q 024315           90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH------GLNRDLSFKAEDR-------  156 (269)
Q Consensus        90 ~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~------~l~~~~g~~~~~~-------  156 (269)
                      ...+++++++++|++++|+|+||||||||+++|++.+ .+.+|.|.++|.++..      .++..++|.+++.       
T Consensus         6 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~   84 (190)
T TIGR01166         6 EVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLL-RPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA   84 (190)
T ss_pred             ceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence            3567889999999999999999999999999999987 4668999999987631      1122233333321       


Q ss_pred             --HHHHHH-----------H-HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcC
Q 024315          157 --VENIRR-----------I-GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD  217 (269)
Q Consensus       157 --~~~~~~-----------l-~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~  217 (269)
                        .+++..           . ..+...+...++..    .+...++++++| ..+++++.++++  +++|||+..++...
T Consensus        85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l--lllDEPt~~LD~~~  162 (190)
T TIGR01166        85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDV--LLLDEPTAGLDPAG  162 (190)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEcCCcccCCHHH
Confidence              111110           0 01122333334422    233446666666 689999999999  99999999999998


Q ss_pred             hhhHHHHHhc
Q 024315          218 PKGLYKLARE  227 (269)
Q Consensus       218 ~k~l~~~~r~  227 (269)
                      .+.+.+.+++
T Consensus       163 ~~~~~~~l~~  172 (190)
T TIGR01166       163 REQMLAILRR  172 (190)
T ss_pred             HHHHHHHHHH
Confidence            8887766553

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.53  E-value=4.1e-14  Score=123.85  Aligned_cols=143  Identities=20%  Similarity=0.203  Sum_probs=96.7

Q ss_pred             ceEEeeCce----eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-------cccCC
Q 024315           81 NILWHKNSV----DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------LNRDL  149 (269)
Q Consensus        81 ~~~~~~~~v----~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-------l~~~~  149 (269)
                      ++.+.+...    ...+++++++.+|++++|+|+||||||||+++|++.++ +.+|.|.++|.++...       .+..+
T Consensus         6 ~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~i   84 (233)
T cd03258           6 NVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER-PTSGSVLVDGTDLTLLSGKELRKARRRI   84 (233)
T ss_pred             cceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEEcccCCHHHHHHHHhhe
Confidence            445554333    56788999999999999999999999999999999884 6689999999876421       12222


Q ss_pred             CCChhhH--------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEE
Q 024315          150 SFKAEDR--------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEV  204 (269)
Q Consensus       150 g~~~~~~--------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i  204 (269)
                      +|.+++.        .+++..            .......+...++..    .+...++++++| ..+++++.++++  +
T Consensus        85 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l--l  162 (233)
T cd03258          85 GMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKV--L  162 (233)
T ss_pred             EEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCE--E
Confidence            3222211        111110            011222334444432    233456666666 689999999999  9


Q ss_pred             EEeCChhHHHhcChhhHHHHHh
Q 024315          205 FMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       205 ~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      ++|||+..++....+.+++.++
T Consensus       163 lLDEP~~~LD~~~~~~l~~~l~  184 (233)
T cd03258         163 LCDEATSALDPETTQSILALLR  184 (233)
T ss_pred             EecCCCCcCCHHHHHHHHHHHH
Confidence            9999999999998888776654

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.52  E-value=4.3e-14  Score=132.65  Aligned_cols=141  Identities=20%  Similarity=0.204  Sum_probs=99.0

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--ccccCCCCChhhH-
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--GLNRDLSFKAEDR-  156 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--~l~~~~g~~~~~~-  156 (269)
                      .++.+.+......+.+++.+.+|++++|+||||||||||+++|+|++ .+.+|.|+++|.++..  ..++.++|..|+. 
T Consensus        23 ~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~-~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~  101 (377)
T PRK11607         23 RNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFE-QPTAGQIMLDGVDLSHVPPYQRPINMMFQSYA  101 (377)
T ss_pred             EeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCceEEEECCEECCCCCHHHCCEEEEeCCCc
Confidence            46666666666778899999999999999999999999999999987 5678999999988642  1112233332221 


Q ss_pred             -------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhH
Q 024315          157 -------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV  212 (269)
Q Consensus       157 -------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~  212 (269)
                             .+++..            ..++..++...++..    .+..+++++++| ..+|+++.++++  +++|||+..
T Consensus       102 lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~l--LLLDEP~s~  179 (377)
T PRK11607        102 LFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKL--LLLDEPMGA  179 (377)
T ss_pred             cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCccc
Confidence                   111110            011223333444432    234457777777 699999999999  999999999


Q ss_pred             HHhcChhhHHH
Q 024315          213 CEARDPKGLYK  223 (269)
Q Consensus       213 l~~R~~k~l~~  223 (269)
                      ++...++.+.+
T Consensus       180 LD~~~r~~l~~  190 (377)
T PRK11607        180 LDKKLRDRMQL  190 (377)
T ss_pred             CCHHHHHHHHH
Confidence            99988877653

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.52  E-value=5.2e-14  Score=124.04  Aligned_cols=144  Identities=20%  Similarity=0.255  Sum_probs=97.2

Q ss_pred             ceEEeeCc-eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhh
Q 024315           81 NILWHKNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAED  155 (269)
Q Consensus        81 ~~~~~~~~-v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~  155 (269)
                      ++.+.+.. ....+.+++.+.+|++++|+|+||||||||+++|++.+ .+.+|.|.++|.++..    ..+..++|.+++
T Consensus         5 ~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~   83 (242)
T cd03295           5 NVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLI-EPTSGEIFIDGEDIREQDPVELRRKIGYVIQQ   83 (242)
T ss_pred             EEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCeEcCcCChHHhhcceEEEccC
Confidence            44555544 45678889999999999999999999999999999987 4668999999987642    112223332221


Q ss_pred             H--------HHHHHH------------HHHHHHHHHhCCcce------eeccCChHHHHH-HHHHHhCCCCCccEEEEeC
Q 024315          156 R--------VENIRR------------IGEVAKLFADAGVIC------IACLISPYRKDR-DACRSMLPEGDFIEVFMDV  208 (269)
Q Consensus       156 ~--------~~~~~~------------l~~~a~~~~~~g~~~------iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~  208 (269)
                      .        .+++..            ...+...+...++..      .+...++++++| ..+++++.++++  +++|+
T Consensus        84 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~l--lllDE  161 (242)
T cd03295          84 IGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPL--LLMDE  161 (242)
T ss_pred             ccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCE--EEecC
Confidence            1        111110            011223334444431      123356666666 689999999999  99999


Q ss_pred             ChhHHHhcChhhHHHHHhc
Q 024315          209 PLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       209 p~~~l~~R~~k~l~~~~r~  227 (269)
                      |+..++....+.+.+.+++
T Consensus       162 Pt~~LD~~~~~~l~~~L~~  180 (242)
T cd03295         162 PFGALDPITRDQLQEEFKR  180 (242)
T ss_pred             CcccCCHHHHHHHHHHHHH
Confidence            9999999888877665543

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.52  E-value=2.8e-14  Score=120.70  Aligned_cols=125  Identities=22%  Similarity=0.298  Sum_probs=89.5

Q ss_pred             eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-----cccCCCCChhhHH--HHHH--
Q 024315           91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAEDRV--ENIR--  161 (269)
Q Consensus        91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-----l~~~~g~~~~~~~--~~~~--  161 (269)
                      ..+.+++.+++|++++|+|+||||||||++.|++.++ +.+|.+.++|.++...     .+..++|..++..  ....  
T Consensus        15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~   93 (182)
T cd03215          15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP-PASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDL   93 (182)
T ss_pred             eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCC
Confidence            5788899999999999999999999999999999884 6689999999876521     1233455444321  0000  


Q ss_pred             HHHHHHHHHHhCCcceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          162 RIGEVAKLFADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       162 ~l~~~a~~~~~~g~~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      .+.+......         ..++++++| ..+++++.++++  +++|||+..++....+.+.+.+++
T Consensus        94 t~~e~l~~~~---------~LS~G~~qrl~la~al~~~p~l--lllDEP~~~LD~~~~~~l~~~l~~  149 (182)
T cd03215          94 SVAENIALSS---------LLSGGNQQKVVLARWLARDPRV--LILDEPTRGVDVGAKAEIYRLIRE  149 (182)
T ss_pred             cHHHHHHHHh---------hcCHHHHHHHHHHHHHccCCCE--EEECCCCcCCCHHHHHHHHHHHHH
Confidence            0111110000         055666666 699999999999  999999999999988887766553

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.52  E-value=4.4e-14  Score=127.92  Aligned_cols=134  Identities=19%  Similarity=0.212  Sum_probs=95.0

Q ss_pred             eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc------ccccCCCCChhhH-------
Q 024315           90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH------GLNRDLSFKAEDR-------  156 (269)
Q Consensus        90 ~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~------~l~~~~g~~~~~~-------  156 (269)
                      ...+++++++.+|++++|+|+||||||||+++|++.+ .+.+|.|.++|.++..      .++..++|.+|+.       
T Consensus        21 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~   99 (287)
T PRK13637         21 KALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLL-KPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEE   99 (287)
T ss_pred             ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccc
Confidence            4678889999999999999999999999999999988 5678999999987742      1223344444321       


Q ss_pred             --HHHHHH-----------H-HHHHHHHHhCCcc--e----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHh
Q 024315          157 --VENIRR-----------I-GEVAKLFADAGVI--C----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEA  215 (269)
Q Consensus       157 --~~~~~~-----------l-~~~a~~~~~~g~~--~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~  215 (269)
                        .+.+..           . ..+...+...++.  .    .+...++++++| .++++++.++++  +++|+|+..++.
T Consensus       100 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~l--lllDEPt~gLD~  177 (287)
T PRK13637        100 TIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKI--LILDEPTAGLDP  177 (287)
T ss_pred             cHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCE--EEEECCccCCCH
Confidence              111110           0 1122334444542  1    133456677776 699999999999  999999999999


Q ss_pred             cChhhHHHHHh
Q 024315          216 RDPKGLYKLAR  226 (269)
Q Consensus       216 R~~k~l~~~~r  226 (269)
                      ..+..+.+.++
T Consensus       178 ~~~~~l~~~l~  188 (287)
T PRK13637        178 KGRDEILNKIK  188 (287)
T ss_pred             HHHHHHHHHHH
Confidence            88888776654

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.52  E-value=7e-14  Score=120.59  Aligned_cols=143  Identities=17%  Similarity=0.173  Sum_probs=96.7

Q ss_pred             ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc---ccccCCCCChhhH-
Q 024315           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH---GLNRDLSFKAEDR-  156 (269)
Q Consensus        81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~---~l~~~~g~~~~~~-  156 (269)
                      ++++.+......+.+++++++| +++|+|+||||||||+++|++.+ .+.+|.+.++|.++..   .++..++|.+++. 
T Consensus         5 ~~~~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~   82 (211)
T cd03264           5 NLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLT-PPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFG   82 (211)
T ss_pred             EEEEEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCC-CCCccEEEECCCccccchHHHHhheEEecCCCc
Confidence            4555555556778899999999 99999999999999999999987 4668999999976532   1112222222211 


Q ss_pred             -------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhH
Q 024315          157 -------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV  212 (269)
Q Consensus       157 -------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~  212 (269)
                             .+.+..            .......+...++..    .+...++++++| ..+++++.++++  +++|+|+..
T Consensus        83 ~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l--lllDEPt~~  160 (211)
T cd03264          83 VYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSI--LIVDEPTAG  160 (211)
T ss_pred             ccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCE--EEEcCCccc
Confidence                   111110            011222333344422    233456666666 689999999999  999999999


Q ss_pred             HHhcChhhHHHHHhc
Q 024315          213 CEARDPKGLYKLARE  227 (269)
Q Consensus       213 l~~R~~k~l~~~~r~  227 (269)
                      ++....+.+++.+++
T Consensus       161 LD~~~~~~l~~~l~~  175 (211)
T cd03264         161 LDPEERIRFRNLLSE  175 (211)
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999988887766653

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10908 cell division protein FtsE; Provisional

Probab=99.52  E-value=5.7e-14  Score=122.17  Aligned_cols=143  Identities=17%  Similarity=0.224  Sum_probs=95.9

Q ss_pred             ceEEee-CceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-------cccCCCCC
Q 024315           81 NILWHK-NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------LNRDLSFK  152 (269)
Q Consensus        81 ~~~~~~-~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-------l~~~~g~~  152 (269)
                      ++.+.+ ......+.+++.+++|++++|+|+||||||||+++|++.+ ++.+|.|.++|.++...       .+..++|.
T Consensus         6 ~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~   84 (222)
T PRK10908          6 HVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIE-RPSAGKIWFSGHDITRLKNREVPFLRRQIGMI   84 (222)
T ss_pred             eeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEcccCChhHHHHHHhheEEE
Confidence            455554 3345678889999999999999999999999999999988 46789999999876420       12223332


Q ss_pred             hhhH--------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEe
Q 024315          153 AEDR--------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMD  207 (269)
Q Consensus       153 ~~~~--------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld  207 (269)
                      +++.        .+++..            ...+...+...++..    .....++++++| ..+++++.++++  +++|
T Consensus        85 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l--lllD  162 (222)
T PRK10908         85 FQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAV--LLAD  162 (222)
T ss_pred             ecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCE--EEEe
Confidence            2211        111110            001122333344322    233456666666 689999999999  9999


Q ss_pred             CChhHHHhcChhhHHHHHh
Q 024315          208 VPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       208 ~p~~~l~~R~~k~l~~~~r  226 (269)
                      ||+..++....+.+.+.++
T Consensus       163 EPt~~LD~~~~~~l~~~l~  181 (222)
T PRK10908        163 EPTGNLDDALSEGILRLFE  181 (222)
T ss_pred             CCCCcCCHHHHHHHHHHHH
Confidence            9999999988777766555

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.52  E-value=1.5e-13  Score=114.01  Aligned_cols=124  Identities=19%  Similarity=0.222  Sum_probs=90.3

Q ss_pred             ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHHHHHHHHH
Q 024315           88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVA  167 (269)
Q Consensus        88 ~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~l~~~a  167 (269)
                      +....+.+||.+++|+.++|+||||||||||.|+++-+. .+.+|++++.|.++.       .+.++..+..+.++.|..
T Consensus        15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Li-sp~~G~l~f~Ge~vs-------~~~pea~Rq~VsY~~Q~p   86 (223)
T COG4619          15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLI-SPTSGTLLFEGEDVS-------TLKPEAYRQQVSYCAQTP   86 (223)
T ss_pred             CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhcc-CCCCceEEEcCcccc-------ccChHHHHHHHHHHHcCc
Confidence            455677889999999999999999999999999999977 577999999999987       444444443333332211


Q ss_pred             ----------------------------HHHHhCCcc-----eeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHH
Q 024315          168 ----------------------------KLFADAGVI-----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVC  213 (269)
Q Consensus       168 ----------------------------~~~~~~g~~-----~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l  213 (269)
                                                  .++.++++-     ..++..++++++| ..+|.+.--+++  +++|++++.+
T Consensus        87 aLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~I--LLLDE~TsAL  164 (223)
T COG4619          87 ALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKI--LLLDEITSAL  164 (223)
T ss_pred             cccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCce--EEecCchhhc
Confidence                                        222333331     1244456677776 688888888888  8999999999


Q ss_pred             HhcChhhH
Q 024315          214 EARDPKGL  221 (269)
Q Consensus       214 ~~R~~k~l  221 (269)
                      ++.+.+.+
T Consensus       165 D~~nkr~i  172 (223)
T COG4619         165 DESNKRNI  172 (223)
T ss_pred             ChhhHHHH
Confidence            98775443

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.52  E-value=8.7e-14  Score=119.45  Aligned_cols=144  Identities=18%  Similarity=0.194  Sum_probs=97.7

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc---ccccCCCCChhh-
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH---GLNRDLSFKAED-  155 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~---~l~~~~g~~~~~-  155 (269)
                      .++++.+......+++++.+++|++++|+|+||||||||++.|++.+ ++.+|.+.++|.++..   .++..++|.+++ 
T Consensus         4 ~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~   82 (201)
T cd03231           4 DELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLS-PPLAGRVLLNGGPLDFQRDSIARGLLYLGHAP   82 (201)
T ss_pred             EEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEecccccHHhhhheEEecccc
Confidence            35555555556778999999999999999999999999999999987 4678999999977532   112222222211 


Q ss_pred             -------HHHHHHH------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcC
Q 024315          156 -------RVENIRR------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD  217 (269)
Q Consensus       156 -------~~~~~~~------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~  217 (269)
                             ..+++..      .......+...++..    .+...++++++| ..+++++.++++  +++|+|+..++...
T Consensus        83 ~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l--lllDEPt~~LD~~~  160 (201)
T cd03231          83 GIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPL--WILDEPTTALDKAG  160 (201)
T ss_pred             ccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCCCCCCHHH
Confidence                   1111110      011222333334422    223346666666 689999999999  99999999999998


Q ss_pred             hhhHHHHHh
Q 024315          218 PKGLYKLAR  226 (269)
Q Consensus       218 ~k~l~~~~r  226 (269)
                      .+.+.+.++
T Consensus       161 ~~~l~~~l~  169 (201)
T cd03231         161 VARFAEAMA  169 (201)
T ss_pred             HHHHHHHHH
Confidence            888776665

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.52  E-value=8.5e-14  Score=123.20  Aligned_cols=146  Identities=21%  Similarity=0.194  Sum_probs=99.1

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc----CCccEEEECCeecCc----ccccCCCC
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH----GLNRDLSF  151 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~----~~~g~i~l~g~~~~~----~l~~~~g~  151 (269)
                      .++.+.+......+++++++.+|++++|+|+||||||||+++|+|.+.+    +.+|.|.++|.++..    .++..++|
T Consensus         7 ~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~   86 (250)
T PRK14247          7 RDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQM   86 (250)
T ss_pred             EeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEE
Confidence            3555555555677889999999999999999999999999999998853    358999999987642    11222232


Q ss_pred             ChhhH--------HHHHHH--------------HHHHHHHHHhCCcc--------eeeccCChHHHHH-HHHHHhCCCCC
Q 024315          152 KAEDR--------VENIRR--------------IGEVAKLFADAGVI--------CIACLISPYRKDR-DACRSMLPEGD  200 (269)
Q Consensus       152 ~~~~~--------~~~~~~--------------l~~~a~~~~~~g~~--------~iv~~~~~~~~~r-~~ar~ll~~~~  200 (269)
                      .+++.        .+++..              ...+...+...++.        ..+...++++++| ..+++++.+++
T Consensus        87 v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~  166 (250)
T PRK14247         87 VFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPE  166 (250)
T ss_pred             EeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence            22211        111110              01122233334431        1233456666666 68899999999


Q ss_pred             ccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          201 FIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       201 ~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      +  +++|+|+..++....+.+++.+++
T Consensus       167 l--llLDEP~~~LD~~~~~~l~~~l~~  191 (250)
T PRK14247        167 V--LLADEPTANLDPENTAKIESLFLE  191 (250)
T ss_pred             E--EEEcCCCccCCHHHHHHHHHHHHH
Confidence            9  999999999999998887766654

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.52  E-value=6.8e-14  Score=124.61  Aligned_cols=143  Identities=15%  Similarity=0.197  Sum_probs=96.6

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhh----
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED----  155 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~----  155 (269)
                      .++.+.+......+++++.+.+|++++|+|+||||||||+++|+|.+ .+.+|.|.++|.++... ....+|..++    
T Consensus         5 ~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~-~~~~~~v~q~~~~~   82 (255)
T PRK11248          5 SHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFV-PYQHGSITLDGKPVEGP-GAERGVVFQNEGLL   82 (255)
T ss_pred             EEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEECCCC-CCcEEEEeCCCccC
Confidence            35555555555678899999999999999999999999999999987 46689999999876421 1111111111    


Q ss_pred             ----HHHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHH
Q 024315          156 ----RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCE  214 (269)
Q Consensus       156 ----~~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~  214 (269)
                          ..+++..            ...+...+...++..    .+...++++++| ..+++++.++++  +++|||+..++
T Consensus        83 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~l--llLDEPt~~LD  160 (255)
T PRK11248         83 PWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQL--LLLDEPFGALD  160 (255)
T ss_pred             CCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCCccCC
Confidence                1111100            011223344444422    233456666666 689999999999  99999999999


Q ss_pred             hcChhhHHHHHh
Q 024315          215 ARDPKGLYKLAR  226 (269)
Q Consensus       215 ~R~~k~l~~~~r  226 (269)
                      ....+.+.+.++
T Consensus       161 ~~~~~~l~~~L~  172 (255)
T PRK11248        161 AFTREQMQTLLL  172 (255)
T ss_pred             HHHHHHHHHHHH
Confidence            988888766544

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.52  E-value=1e-13  Score=122.89  Aligned_cols=146  Identities=21%  Similarity=0.236  Sum_probs=98.8

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhc--c--CCccEEEECCeecCc------ccccCC
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH--W--RGKLTYILDGDNCRH------GLNRDL  149 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~--~--~~~g~i~l~g~~~~~------~l~~~~  149 (269)
                      .++++.+......+++++.+.+|++++|+|+||||||||+++|+|.+.  +  +.+|.|.++|.++..      .++..+
T Consensus        10 ~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i   89 (253)
T PRK14242         10 RGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRV   89 (253)
T ss_pred             eeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcE
Confidence            456666655567889999999999999999999999999999999763  1  458999999987632      112233


Q ss_pred             CCChhhH-------HHHHHH-------------HHHHHHHHHhCCcc--------eeeccCChHHHHH-HHHHHhCCCCC
Q 024315          150 SFKAEDR-------VENIRR-------------IGEVAKLFADAGVI--------CIACLISPYRKDR-DACRSMLPEGD  200 (269)
Q Consensus       150 g~~~~~~-------~~~~~~-------------l~~~a~~~~~~g~~--------~iv~~~~~~~~~r-~~ar~ll~~~~  200 (269)
                      +|.+++.       .+++..             ..++...+...++.        ......++++++| ..+++++.+++
T Consensus        90 ~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~  169 (253)
T PRK14242         90 GMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPE  169 (253)
T ss_pred             EEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence            3333221       111110             00112223333331        1123456666666 68999999999


Q ss_pred             ccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          201 FIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       201 ~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      +  +++|||+..++....+.+.+.+++
T Consensus       170 l--lllDEPt~~LD~~~~~~l~~~l~~  194 (253)
T PRK14242        170 V--LLMDEPASALDPIATQKIEELIHE  194 (253)
T ss_pred             E--EEEeCCcccCCHHHHHHHHHHHHH
Confidence            8  999999999999988887766654

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.52  E-value=6.3e-14  Score=125.74  Aligned_cols=145  Identities=17%  Similarity=0.173  Sum_probs=98.6

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc------ccccCCCCCh
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH------GLNRDLSFKA  153 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~------~l~~~~g~~~  153 (269)
                      .++.+.+......+.+++++.+|++++|+|+||||||||+++|+|.+ .+.+|.|.++|.++..      .++..++|.+
T Consensus         5 ~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~   83 (271)
T PRK13638          5 SDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLL-RPQKGAVLWQGKPLDYSKRGLLALRQQVATVF   83 (271)
T ss_pred             EEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CCCccEEEECCEEcccccCCHHHHHhheEEEe
Confidence            35666665555778899999999999999999999999999999988 4668999999987631      1122334433


Q ss_pred             hhH---------HHHHHH-----------H-HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEe
Q 024315          154 EDR---------VENIRR-----------I-GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMD  207 (269)
Q Consensus       154 ~~~---------~~~~~~-----------l-~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld  207 (269)
                      ++.         .+.+..           . ..+...+...++..    .+...++++++| ..+++++.++++  +++|
T Consensus        84 q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~l--llLD  161 (271)
T PRK13638         84 QDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARY--LLLD  161 (271)
T ss_pred             eChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCE--EEEe
Confidence            321         111110           0 01112233333321    233456666666 689999999999  9999


Q ss_pred             CChhHHHhcChhhHHHHHhc
Q 024315          208 VPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       208 ~p~~~l~~R~~k~l~~~~r~  227 (269)
                      ||+..++....+.+.+.+++
T Consensus       162 EPt~~LD~~~~~~l~~~l~~  181 (271)
T PRK13638        162 EPTAGLDPAGRTQMIAIIRR  181 (271)
T ss_pred             CCcccCCHHHHHHHHHHHHH
Confidence            99999999988887666543

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=99.52  E-value=2.5e-13  Score=114.16  Aligned_cols=157  Identities=22%  Similarity=0.161  Sum_probs=100.5

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCccccc-------CCCCC------hhhH-HHHHHHHHHH
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNR-------DLSFK------AEDR-VENIRRIGEV  166 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~-------~~g~~------~~~~-~~~~~~l~~~  166 (269)
                      +|.+++|+|++||||||+++.|+..+..+   .+.++.|++...+..       .+.+.      ++.. ...+......
T Consensus         1 ~~~~i~l~G~~gsGKst~a~~l~~~~~~~---~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~   77 (175)
T cd00227           1 TGRIIILNGGSSAGKSSIARALQSVLAEP---WLHFGVDSFIEALPLKCQDAEGGIEFDGDGGVSPGPEFRLLEGAWYEA   77 (175)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhhCCC---ccccCccHHHHhcChhhcccccccccCccCCcccchHHHHHHHHHHHH
Confidence            47899999999999999999999887422   345566655432211       11111      1111 1233334445


Q ss_pred             HHHHHhCCcceeeccCCh-HHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCccccccc-cccccCCCC
Q 024315          167 AKLFADAGVICIACLISP-YRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTG-IDDPYEPPL  244 (269)
Q Consensus       167 a~~~~~~g~~~iv~~~~~-~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~~-i~~~~e~p~  244 (269)
                      +..+...|..++++.... ....++.++.+.. .++..|++++|.++|.+|..++      .+....+.. ..+.+++|.
T Consensus        78 ~~~~l~~G~~VIvD~~~~~~~~~r~~~~~~~~-~~~~~v~l~~~~~~l~~R~~~R------~~~~~~~~~~~~~~~~~~~  150 (175)
T cd00227          78 VAAMARAGANVIADDVFLGRAALQDCWRSFVG-LDVLWVGVRCPGEVAEGRETAR------GDRVPGQARKQARVVHAGV  150 (175)
T ss_pred             HHHHHhCCCcEEEeeeccCCHHHHHHHHHhcC-CCEEEEEEECCHHHHHHHHHhc------CCccchHHHHHHHHhcCCC
Confidence            555778899888876554 4455566665544 5677899999999999998543      333322222 124455677


Q ss_pred             CCCeEEEcCCCcCHHHHHH-HHhhc
Q 024315          245 NCEVGVHVWYRFELAETWR-ITKWL  268 (269)
Q Consensus       245 ~~e~~id~~~~~~~~~~~~-i~~~~  268 (269)
                      .++++|||+ ..++++++. |.+.|
T Consensus       151 ~~dl~iDts-~~s~~e~a~~i~~~l  174 (175)
T cd00227         151 EYDLEVDTT-HKTPIECARAIAARV  174 (175)
T ss_pred             cceEEEECC-CCCHHHHHHHHHHhc
Confidence            789999995 677888776 76654

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.52  E-value=8.7e-14  Score=121.95  Aligned_cols=145  Identities=24%  Similarity=0.292  Sum_probs=97.8

Q ss_pred             cceEEeeCc----eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-------c-cc
Q 024315           80 TNILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------L-NR  147 (269)
Q Consensus        80 ~~~~~~~~~----v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-------l-~~  147 (269)
                      .++.+.+..    ....+.+++++++|++++|+|+||||||||+++|++.+ .+.+|.|.++|.++...       . +.
T Consensus         9 ~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~i~~~~~~~~~~~~~~   87 (233)
T PRK11629          9 DNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLD-TPTSGDVIFNGQPMSKLSSAAKAELRNQ   87 (233)
T ss_pred             EeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEEcCcCCHHHHHHHHhc
Confidence            345555432    45678889999999999999999999999999999988 46789999999876421       1 12


Q ss_pred             CCCCChhhH--------HHHHHH-----------H-HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCcc
Q 024315          148 DLSFKAEDR--------VENIRR-----------I-GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFI  202 (269)
Q Consensus       148 ~~g~~~~~~--------~~~~~~-----------l-~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~  202 (269)
                      .++|.+++.        .+++..           . ..+...+...++..    .+...++++++| ..+++++.++++ 
T Consensus        88 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~l-  166 (233)
T PRK11629         88 KLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRL-  166 (233)
T ss_pred             cEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCE-
Confidence            233322211        111110           0 11223344445432    233456666666 689999999999 


Q ss_pred             EEEEeCChhHHHhcChhhHHHHHhc
Q 024315          203 EVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       203 ~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                       +++|||+..++....+.+++.+++
T Consensus       167 -llLDEPt~~LD~~~~~~l~~~l~~  190 (233)
T PRK11629        167 -VLADEPTGNLDARNADSIFQLLGE  190 (233)
T ss_pred             -EEEeCCCCCCCHHHHHHHHHHHHH
Confidence             999999999999888887766543

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.52  E-value=6.1e-14  Score=123.17  Aligned_cols=144  Identities=17%  Similarity=0.221  Sum_probs=97.7

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc---cccCCCCChhhH
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---LNRDLSFKAEDR  156 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~---l~~~~g~~~~~~  156 (269)
                      .++.+.+......+.+++.+.+|++++|+|+||||||||+++|+|.+ .+.+|.|.++|.++...   ....++|.+++.
T Consensus         5 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~   83 (236)
T TIGR03864         5 AGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLY-VAQEGQISVAGHDLRRAPRAALARLGVVFQQP   83 (236)
T ss_pred             EeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-CCCceEEEECCEEcccCChhhhhhEEEeCCCC
Confidence            34555555556778899999999999999999999999999999987 46789999999876320   111122222210


Q ss_pred             --------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChh
Q 024315          157 --------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQ  211 (269)
Q Consensus       157 --------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~  211 (269)
                              .+++..            .......+...++..    .+...++++++| ..+++++.++++  +++|+|+.
T Consensus        84 ~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~l--lllDEP~~  161 (236)
T TIGR03864        84 TLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPAL--LLLDEPTV  161 (236)
T ss_pred             CCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCE--EEEcCCcc
Confidence                    111110            011122333444422    233456666666 699999999999  99999999


Q ss_pred             HHHhcChhhHHHHHh
Q 024315          212 VCEARDPKGLYKLAR  226 (269)
Q Consensus       212 ~l~~R~~k~l~~~~r  226 (269)
                      .++....+.+++.++
T Consensus       162 ~LD~~~~~~l~~~l~  176 (236)
T TIGR03864       162 GLDPASRAAIVAHVR  176 (236)
T ss_pred             CCCHHHHHHHHHHHH
Confidence            999999888776554

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.52  E-value=7.2e-14  Score=124.73  Aligned_cols=143  Identities=17%  Similarity=0.183  Sum_probs=95.8

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhh----
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED----  155 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~----  155 (269)
                      .++.+.+......+.+++.+.+|++++|+|+||||||||++.|++.+ .+.+|.|.+++.++.. ++..++|..++    
T Consensus        16 ~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~-~p~~G~i~~~g~~~~~-~~~~i~~v~q~~~l~   93 (257)
T PRK11247         16 NAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLE-TPSAGELLAGTAPLAE-AREDTRLMFQDARLL   93 (257)
T ss_pred             EEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCeEEEECCEEHHH-hhCceEEEecCccCC
Confidence            45555555555678889999999999999999999999999999988 4668999998876421 11111111111    


Q ss_pred             ----HHHHHHH------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhh
Q 024315          156 ----RVENIRR------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKG  220 (269)
Q Consensus       156 ----~~~~~~~------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~  220 (269)
                          ..+++..      -......+...++..    .+...++++++| ..+++++.++++  +++|||+..++....+.
T Consensus        94 ~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~l--llLDEPt~~LD~~~~~~  171 (257)
T PRK11247         94 PWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGL--LLLDEPLGALDALTRIE  171 (257)
T ss_pred             CCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCCCCCCHHHHHH
Confidence                1111110      011223334444422    233456666666 699999999999  99999999999988877


Q ss_pred             HHHHHh
Q 024315          221 LYKLAR  226 (269)
Q Consensus       221 l~~~~r  226 (269)
                      +++.++
T Consensus       172 l~~~L~  177 (257)
T PRK11247        172 MQDLIE  177 (257)
T ss_pred             HHHHHH
Confidence            665543

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.52  E-value=7.8e-14  Score=124.91  Aligned_cols=146  Identities=19%  Similarity=0.151  Sum_probs=99.4

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc----CCccEEEECCeecCc------ccccCC
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH------GLNRDL  149 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~----~~~g~i~l~g~~~~~------~l~~~~  149 (269)
                      .++.+.+......+.+++.+++|++++|+|+||||||||+++|+|.+.+    +.+|.|.++|.++..      .++..+
T Consensus        23 ~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i  102 (267)
T PRK14235         23 RDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARV  102 (267)
T ss_pred             EeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhce
Confidence            4666666555667889999999999999999999999999999998853    368999999977631      112223


Q ss_pred             CCChhh-------HHHHHHH--------------HHHHHHHHHhCCcc--------eeeccCChHHHHH-HHHHHhCCCC
Q 024315          150 SFKAED-------RVENIRR--------------IGEVAKLFADAGVI--------CIACLISPYRKDR-DACRSMLPEG  199 (269)
Q Consensus       150 g~~~~~-------~~~~~~~--------------l~~~a~~~~~~g~~--------~iv~~~~~~~~~r-~~ar~ll~~~  199 (269)
                      +|..++       ..+++..              ..++...+...++.        ..+..+++++++| ..+++++.++
T Consensus       103 ~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p  182 (267)
T PRK14235        103 GMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSP  182 (267)
T ss_pred             EEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence            332221       1111110              01112233333442        1233456666666 6999999999


Q ss_pred             CccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          200 DFIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       200 ~~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      ++  +++|+|+..++....+.+++.+++
T Consensus       183 ~l--llLDEPt~~LD~~~~~~l~~~L~~  208 (267)
T PRK14235        183 EV--ILMDEPCSALDPIATAKVEELIDE  208 (267)
T ss_pred             CE--EEEeCCCcCCCHHHHHHHHHHHHH
Confidence            99  999999999999988887766553

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.52  E-value=9.3e-14  Score=120.57  Aligned_cols=135  Identities=21%  Similarity=0.248  Sum_probs=92.7

Q ss_pred             eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-------cc-cCCCCChhhH----
Q 024315           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------LN-RDLSFKAEDR----  156 (269)
Q Consensus        89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-------l~-~~~g~~~~~~----  156 (269)
                      ....+..++.+++|++++|+|+||||||||+++|+|.+ .+.+|.+.++|.++...       ++ ..++|.+++.    
T Consensus        18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~   96 (221)
T TIGR02211        18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLD-NPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLP   96 (221)
T ss_pred             eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCC
Confidence            45678889999999999999999999999999999988 46689999999775320       01 1222222210    


Q ss_pred             ----HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHh
Q 024315          157 ----VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEA  215 (269)
Q Consensus       157 ----~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~  215 (269)
                          .+++..            ...+...+...++..    .+...++++++| ..+++++.++++  +++|||+..++.
T Consensus        97 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~i--lllDEPt~~LD~  174 (221)
T TIGR02211        97 DFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSL--VLADEPTGNLDN  174 (221)
T ss_pred             CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCE--EEEeCCCCcCCH
Confidence                111100            011223334444422    233456677776 689999999999  999999999999


Q ss_pred             cChhhHHHHHh
Q 024315          216 RDPKGLYKLAR  226 (269)
Q Consensus       216 R~~k~l~~~~r  226 (269)
                      ...+.+.+.++
T Consensus       175 ~~~~~l~~~l~  185 (221)
T TIGR02211       175 NNAKIIFDLML  185 (221)
T ss_pred             HHHHHHHHHHH
Confidence            88888776655

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.51  E-value=5.7e-14  Score=134.35  Aligned_cols=151  Identities=21%  Similarity=0.279  Sum_probs=105.7

Q ss_pred             ccceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-----c-------cc
Q 024315           79 STNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----G-------LN  146 (269)
Q Consensus        79 ~~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-----~-------l~  146 (269)
                      ..+++..++.|.+.+.++|.+++||+++|+|.||+|||||.|.|+|.+ .|.+|.|+++|..+..     .       .+
T Consensus        11 ~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~-~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~   89 (500)
T COG1129          11 LRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVY-PPDSGEILIDGKPVAFSSPRDALAAGIATVH   89 (500)
T ss_pred             eecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcc-cCCCceEEECCEEccCCCHHHHHhCCcEEEe
Confidence            367889999999999999999999999999999999999999999988 5779999999998752     0       11


Q ss_pred             cCCCCChh----hH-------HH-----HHHHHHH-HHHHHHhCCcc----eeeccCChHHHHH-HHHHHhCCCCCccEE
Q 024315          147 RDLSFKAE----DR-------VE-----NIRRIGE-VAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEV  204 (269)
Q Consensus       147 ~~~g~~~~----~~-------~~-----~~~~l~~-~a~~~~~~g~~----~iv~~~~~~~~~r-~~ar~ll~~~~~~~i  204 (269)
                      +++.+.+.    +.       .+     ..+.+.+ ...++...+..    ..+..++..++|. +++|++..++++  +
T Consensus        90 QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arl--l  167 (500)
T COG1129          90 QELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARV--L  167 (500)
T ss_pred             echhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCE--E
Confidence            11111110    00       00     0011112 22334444442    2233445555554 899999998888  9


Q ss_pred             EEeCChhHHHhcChhhHHHHHhcCcccc
Q 024315          205 FMDVPLQVCEARDPKGLYKLAREGKVKG  232 (269)
Q Consensus       205 ~ld~p~~~l~~R~~k~l~~~~r~g~~~~  232 (269)
                      .||||++.|..+..+.+++..++=+-++
T Consensus       168 IlDEPTaaLt~~E~~~Lf~~ir~Lk~~G  195 (500)
T COG1129         168 ILDEPTAALTVKETERLFDLIRRLKAQG  195 (500)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999887766444333

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.51  E-value=2.9e-13  Score=116.41  Aligned_cols=143  Identities=18%  Similarity=0.231  Sum_probs=96.9

Q ss_pred             ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc---ccccCCCCChh---
Q 024315           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH---GLNRDLSFKAE---  154 (269)
Q Consensus        81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~---~l~~~~g~~~~---  154 (269)
                      +++..+......+.+++.+++|++++|+|+||||||||++.|++.++ +.+|.|.++|.++..   ..+..+++..+   
T Consensus         6 ~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~   84 (204)
T PRK13538          6 NLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR-PDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPG   84 (204)
T ss_pred             EEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEEcccchHHhhhheEEeCCccc
Confidence            45555555567889999999999999999999999999999999884 668999999987642   11111111111   


Q ss_pred             -----hHHHHHHH---------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHh
Q 024315          155 -----DRVENIRR---------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEA  215 (269)
Q Consensus       155 -----~~~~~~~~---------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~  215 (269)
                           ...+++..         ...+...+...++..    .+...++++++| ..+++++.++++  +++|||+..++.
T Consensus        85 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~l--lllDEPt~~LD~  162 (204)
T PRK13538         85 IKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPL--WILDEPFTAIDK  162 (204)
T ss_pred             cCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCE--EEEeCCCccCCH
Confidence                 11111110         011222334444422    223446666666 689999999999  999999999999


Q ss_pred             cChhhHHHHHh
Q 024315          216 RDPKGLYKLAR  226 (269)
Q Consensus       216 R~~k~l~~~~r  226 (269)
                      ...+.+++.++
T Consensus       163 ~~~~~l~~~l~  173 (204)
T PRK13538        163 QGVARLEALLA  173 (204)
T ss_pred             HHHHHHHHHHH
Confidence            98888776655

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.51  E-value=7.5e-14  Score=123.44  Aligned_cols=144  Identities=19%  Similarity=0.208  Sum_probs=98.2

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc------------cccc
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH------------GLNR  147 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~------------~l~~  147 (269)
                      .++.+.+......+.+++++.+|++++|+|+||||||||+++|+|.++ +.+|.|.++|.++..            .++.
T Consensus         7 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~   85 (250)
T PRK11264          7 KNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ-PEAGTIRVGDITIDTARSLSQQKGLIRQLRQ   85 (250)
T ss_pred             eceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCeEEEECCEEccccccccchhhHHHHhhh
Confidence            456666655667889999999999999999999999999999999874 668999999876531            1112


Q ss_pred             CCCCChhhH--------HHHHHH------------H-HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCc
Q 024315          148 DLSFKAEDR--------VENIRR------------I-GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDF  201 (269)
Q Consensus       148 ~~g~~~~~~--------~~~~~~------------l-~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~  201 (269)
                      .++|.+++.        .+++..            . ......+...++..    .....++++++| ..+++++.++++
T Consensus        86 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~l  165 (250)
T PRK11264         86 HVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEV  165 (250)
T ss_pred             hEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCE
Confidence            223222211        111110            0 11222334444432    233346666666 689999999999


Q ss_pred             cEEEEeCChhHHHhcChhhHHHHHh
Q 024315          202 IEVFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       202 ~~i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                        +++|||+..++....+.+++.++
T Consensus       166 --llLDEPt~~LD~~~~~~l~~~l~  188 (250)
T PRK11264        166 --ILFDEPTSALDPELVGEVLNTIR  188 (250)
T ss_pred             --EEEeCCCccCCHHHHHHHHHHHH
Confidence              99999999999998888776544

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.51  E-value=1e-13  Score=121.17  Aligned_cols=145  Identities=17%  Similarity=0.167  Sum_probs=96.3

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-----cccCCCCChh
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAE  154 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-----l~~~~g~~~~  154 (269)
                      .++.+.+......+..++++++|++++|+|+||||||||+++|+|.++ +.+|.+.++|.++...     .+..++|.++
T Consensus         4 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q   82 (230)
T TIGR03410         4 SNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP-VKSGSIRLDGEDITKLPPHERARAGIAYVPQ   82 (230)
T ss_pred             EeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCEEEECCEECCCCCHHHHHHhCeEEecc
Confidence            356666655567789999999999999999999999999999999884 6689999999876421     1122333332


Q ss_pred             hH--------HHHHHHH--------HH-HHHHHHhCC-c----ceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChh
Q 024315          155 DR--------VENIRRI--------GE-VAKLFADAG-V----ICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQ  211 (269)
Q Consensus       155 ~~--------~~~~~~l--------~~-~a~~~~~~g-~----~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~  211 (269)
                      +.        .+++...        .+ ....+...+ +    ...+...++++++| ..+++++.++++  +++|+|+.
T Consensus        83 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~i--lllDEPt~  160 (230)
T TIGR03410        83 GREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKL--LLLDEPTE  160 (230)
T ss_pred             CCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEecCCcc
Confidence            21        1111100        00 011111111 1    11233346666666 688999999999  99999999


Q ss_pred             HHHhcChhhHHHHHhc
Q 024315          212 VCEARDPKGLYKLARE  227 (269)
Q Consensus       212 ~l~~R~~k~l~~~~r~  227 (269)
                      .++....+.+.+.+++
T Consensus       161 ~LD~~~~~~l~~~l~~  176 (230)
T TIGR03410       161 GIQPSIIKDIGRVIRR  176 (230)
T ss_pred             cCCHHHHHHHHHHHHH
Confidence            9999988887766553

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.51  E-value=7.5e-14  Score=121.52  Aligned_cols=134  Identities=22%  Similarity=0.252  Sum_probs=92.0

Q ss_pred             eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-------ccccCCCCChhhH------
Q 024315           90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-------GLNRDLSFKAEDR------  156 (269)
Q Consensus        90 ~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-------~l~~~~g~~~~~~------  156 (269)
                      ...+.+++++++|++++|+|+||||||||++.|++.+ .+.+|.|.++|.++..       ..+..++|.+++.      
T Consensus        19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~   97 (228)
T cd03257          19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLL-KPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNP   97 (228)
T ss_pred             eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCC
Confidence            4678889999999999999999999999999999987 4678999999987642       1122233322221      


Q ss_pred             ----HHHHH------------HH-HHH-HHHHHhCCcc-e----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhH
Q 024315          157 ----VENIR------------RI-GEV-AKLFADAGVI-C----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV  212 (269)
Q Consensus       157 ----~~~~~------------~l-~~~-a~~~~~~g~~-~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~  212 (269)
                          .+++.            .. ... ...+...++. .    .+...++++++| ..+++++.++++  +++|||+..
T Consensus        98 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~l--llLDEPt~~  175 (228)
T cd03257          98 RMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKL--LIADEPTSA  175 (228)
T ss_pred             cCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCE--EEecCCCCC
Confidence                01110            00 011 1233344442 1    123356666666 689999999999  999999999


Q ss_pred             HHhcChhhHHHHHh
Q 024315          213 CEARDPKGLYKLAR  226 (269)
Q Consensus       213 l~~R~~k~l~~~~r  226 (269)
                      ++....+.+++.++
T Consensus       176 LD~~~~~~l~~~l~  189 (228)
T cd03257         176 LDVSVQAQILDLLK  189 (228)
T ss_pred             CCHHHHHHHHHHHH
Confidence            99988888776655

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.51  E-value=1.1e-13  Score=120.93  Aligned_cols=144  Identities=15%  Similarity=0.144  Sum_probs=97.2

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhh
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAED  155 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~  155 (269)
                      .++.+.+......+++++++.+|++++|+|+||||||||+++|++.+ .+.+|.+.++|.++..    ..+..++|..++
T Consensus        11 ~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~   89 (225)
T PRK10247         11 QNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLI-SPTSGTLLFEGEDISTLKPEIYRQQVSYCAQT   89 (225)
T ss_pred             eccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhccc-CCCCCeEEECCEEcCcCCHHHHHhccEEEecc
Confidence            45666665556788899999999999999999999999999999977 4678999999976532    111222322221


Q ss_pred             -------HHHHHHH----------HHHHHHHHHhCCcce-----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhH
Q 024315          156 -------RVENIRR----------IGEVAKLFADAGVIC-----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV  212 (269)
Q Consensus       156 -------~~~~~~~----------l~~~a~~~~~~g~~~-----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~  212 (269)
                             ..+++..          .......+...++..     .+...++++++| ..+++++.++++  +++|+|+..
T Consensus        90 ~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~l--lllDEPt~~  167 (225)
T PRK10247         90 PTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKV--LLLDEITSA  167 (225)
T ss_pred             cccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCE--EEEeCCccc
Confidence                   1111110          011223334444421     133345666666 689999999999  999999999


Q ss_pred             HHhcChhhHHHHHh
Q 024315          213 CEARDPKGLYKLAR  226 (269)
Q Consensus       213 l~~R~~k~l~~~~r  226 (269)
                      ++....+.+.+.++
T Consensus       168 LD~~~~~~l~~~l~  181 (225)
T PRK10247        168 LDESNKHNVNEIIH  181 (225)
T ss_pred             CCHHHHHHHHHHHH
Confidence            99988777665544

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.51  E-value=6.5e-14  Score=127.63  Aligned_cols=144  Identities=15%  Similarity=0.217  Sum_probs=99.9

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc---ccccCCCCChhhH
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH---GLNRDLSFKAEDR  156 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~---~l~~~~g~~~~~~  156 (269)
                      .++.+.++.....++.+|.+++|++++|+||||||||||+++|++.+ .+.+|.|.++|.++..   .++..++|.+++.
T Consensus         6 ~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~-~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~   84 (301)
T TIGR03522         6 SSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYL-PPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHN   84 (301)
T ss_pred             EEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEcccChHHHHhceEEecCCC
Confidence            45666666677889999999999999999999999999999999987 4678999999987642   1222233332211


Q ss_pred             --------HHHHH---HH---------HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChh
Q 024315          157 --------VENIR---RI---------GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQ  211 (269)
Q Consensus       157 --------~~~~~---~l---------~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~  211 (269)
                              .+++.   .+         ......+...++..    .+...++++++| ..+++++.++++  +++|+|+.
T Consensus        85 ~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~l--liLDEPt~  162 (301)
T TIGR03522        85 PLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKV--LILDEPTT  162 (301)
T ss_pred             CCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCE--EEEcCCcc
Confidence                    11111   10         11222333344422    233456666666 699999999999  99999999


Q ss_pred             HHHhcChhhHHHHHh
Q 024315          212 VCEARDPKGLYKLAR  226 (269)
Q Consensus       212 ~l~~R~~k~l~~~~r  226 (269)
                      .++...++.+.+.++
T Consensus       163 gLD~~~~~~l~~~l~  177 (301)
T TIGR03522       163 GLDPNQLVEIRNVIK  177 (301)
T ss_pred             cCCHHHHHHHHHHHH
Confidence            999998887665554

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.51  E-value=7.3e-14  Score=123.04  Aligned_cols=144  Identities=17%  Similarity=0.201  Sum_probs=97.8

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC----------cccccCC
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR----------HGLNRDL  149 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~----------~~l~~~~  149 (269)
                      .++.+.+......+++++++++|++++|+|+||||||||+++|+|.+ .+.+|.|.++|.++.          ...+..+
T Consensus         6 ~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i   84 (242)
T PRK11124          6 NGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLE-MPRSGTLNIAGNHFDFSKTPSDKAIRELRRNV   84 (242)
T ss_pred             EeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEecccccccchhhHHHHHhhe
Confidence            45666665556788899999999999999999999999999999987 467899999998752          0112223


Q ss_pred             CCChhhH--------HHHHHH-------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccE
Q 024315          150 SFKAEDR--------VENIRR-------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIE  203 (269)
Q Consensus       150 g~~~~~~--------~~~~~~-------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~  203 (269)
                      +|.+++.        .+++..             .......+...++..    .+...++++++| ..+++++.++++  
T Consensus        85 ~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~l--  162 (242)
T PRK11124         85 GMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQV--  162 (242)
T ss_pred             EEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE--
Confidence            3322211        111110             011222333344422    133456666666 689999999998  


Q ss_pred             EEEeCChhHHHhcChhhHHHHHh
Q 024315          204 VFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       204 i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      +++|||+..++....+.+++.++
T Consensus       163 lilDEPt~~LD~~~~~~l~~~l~  185 (242)
T PRK11124        163 LLFDEPTAALDPEITAQIVSIIR  185 (242)
T ss_pred             EEEcCCCCcCCHHHHHHHHHHHH
Confidence            99999999999988887766554

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.51  E-value=8.4e-14  Score=123.08  Aligned_cols=145  Identities=21%  Similarity=0.210  Sum_probs=98.3

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCC-----ccEEEECCeecCc------ccccC
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG-----KLTYILDGDNCRH------GLNRD  148 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~-----~g~i~l~g~~~~~------~l~~~  148 (269)
                      .++.+.+......+++++++++|++++|+|+||||||||++.|+|.+. +.     +|.|.++|.++..      ..+..
T Consensus         5 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~   83 (247)
T TIGR00972         5 ENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMND-LVPGVRIEGKVLFDGQDIYDKKIDVVELRRR   83 (247)
T ss_pred             EEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC-CCcCCCCceEEEECCEEccccccchHHHHhh
Confidence            355555555567788999999999999999999999999999999885 44     8999999987642      11222


Q ss_pred             CCCChhhH-------HHHHHH------------H-HHHHHHHHhCCcc----e----eeccCChHHHHH-HHHHHhCCCC
Q 024315          149 LSFKAEDR-------VENIRR------------I-GEVAKLFADAGVI----C----IACLISPYRKDR-DACRSMLPEG  199 (269)
Q Consensus       149 ~g~~~~~~-------~~~~~~------------l-~~~a~~~~~~g~~----~----iv~~~~~~~~~r-~~ar~ll~~~  199 (269)
                      ++|.+++.       .+++..            . ......+...++.    .    .+...++++++| ..+++++.++
T Consensus        84 i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p  163 (247)
T TIGR00972        84 VGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEP  163 (247)
T ss_pred             eEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCC
Confidence            33322221       111110            0 1112233334443    1    123456666666 6899999999


Q ss_pred             CccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          200 DFIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       200 ~~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      ++  +++|||+..++......+++.+++
T Consensus       164 ~l--lllDEPt~~LD~~~~~~l~~~l~~  189 (247)
T TIGR00972       164 EV--LLLDEPTSALDPIATGKIEELIQE  189 (247)
T ss_pred             CE--EEEeCCcccCCHHHHHHHHHHHHH
Confidence            98  999999999999988887766553

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.51  E-value=1.1e-13  Score=122.15  Aligned_cols=145  Identities=17%  Similarity=0.212  Sum_probs=98.7

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhh
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAED  155 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~  155 (269)
                      .++.+.+......+.+++.+.+|++++|+|+||||||||+++|++.+ .+.+|.|.++|.++..    .++..++|.+++
T Consensus         7 ~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~   85 (241)
T PRK14250          7 KEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLI-DPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQ   85 (241)
T ss_pred             EeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEEhhhcChHHhhhcEEEEecC
Confidence            35666665555678899999999999999999999999999999987 4678999999987632    112223333322


Q ss_pred             H-------HHHHHH--------HHHHHHHHHhCCcc-e----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHH
Q 024315          156 R-------VENIRR--------IGEVAKLFADAGVI-C----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCE  214 (269)
Q Consensus       156 ~-------~~~~~~--------l~~~a~~~~~~g~~-~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~  214 (269)
                      .       .+++..        ..+....+...++. .    .....++++++| ..+++++.++++  +++|+|+..++
T Consensus        86 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~l--lllDEPt~~LD  163 (241)
T PRK14250         86 PHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEV--LLLDEPTSALD  163 (241)
T ss_pred             chhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCE--EEEeCCcccCC
Confidence            1       111110        01122233333442 1    233456666666 689999999999  99999999999


Q ss_pred             hcChhhHHHHHhc
Q 024315          215 ARDPKGLYKLARE  227 (269)
Q Consensus       215 ~R~~k~l~~~~r~  227 (269)
                      ....+.+++.++.
T Consensus       164 ~~~~~~l~~~l~~  176 (241)
T PRK14250        164 PTSTEIIEELIVK  176 (241)
T ss_pred             HHHHHHHHHHHHH
Confidence            9888887766553

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.51  E-value=5.1e-14  Score=122.85  Aligned_cols=144  Identities=10%  Similarity=0.128  Sum_probs=108.5

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHH--
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRV--  157 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~--  157 (269)
                      ++++..+++..+.++.||.+++|++.+++|+||+||||+++.|.+++ .+..|.|.++|.++.......+||-+++|-  
T Consensus         6 e~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILgll-e~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy   84 (300)
T COG4152           6 EGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLL-EPTEGEITWNGGPLSQEIKNRIGYLPEERGLY   84 (300)
T ss_pred             ecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccC-CccCceEEEcCcchhhhhhhhcccChhhhccC
Confidence            45667778899999999999999999999999999999999999999 567899999999999888888899998872  


Q ss_pred             ------HHHHHHH------------HHHHHHHhCCcce----eecc-CChHHHHHHHHHHhCCCCCccEEEEeCChhHHH
Q 024315          158 ------ENIRRIG------------EVAKLFADAGVIC----IACL-ISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCE  214 (269)
Q Consensus       158 ------~~~~~l~------------~~a~~~~~~g~~~----iv~~-~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~  214 (269)
                            +.+.+++            +....+....+..    -+.. +.+.++.-+.+.+++.+|++  +.+|+|++.++
T Consensus        85 ~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeL--lILDEPFSGLD  162 (300)
T COG4152          85 PKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPEL--LILDEPFSGLD  162 (300)
T ss_pred             ccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCE--EEecCCccCCC
Confidence                  2222221            1122233333322    1222 33444555788889999999  99999999999


Q ss_pred             hcChhhHHHHHh
Q 024315          215 ARDPKGLYKLAR  226 (269)
Q Consensus       215 ~R~~k~l~~~~r  226 (269)
                      +-+.+-+.+...
T Consensus       163 PVN~elLk~~I~  174 (300)
T COG4152         163 PVNVELLKDAIF  174 (300)
T ss_pred             hhhHHHHHHHHH
Confidence            988776655544

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.51  E-value=1.5e-13  Score=118.50  Aligned_cols=144  Identities=19%  Similarity=0.209  Sum_probs=96.8

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-cccCCCCChh----
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-LNRDLSFKAE----  154 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-l~~~~g~~~~----  154 (269)
                      .++++.+......+.+++.+.+|++++|+|+||||||||++.|++.+ .+.+|.|.++|.++... .+...+|..+    
T Consensus         6 ~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~   84 (207)
T PRK13539          6 EDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLL-PPAAGTIKLDGGDIDDPDVAEACHYLGHRNAM   84 (207)
T ss_pred             EeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEeCcchhhHhhcEEecCCCcC
Confidence            45666665556788999999999999999999999999999999987 46689999999764310 1111121111    


Q ss_pred             ----hHHHHHH---HH-----HHHHHHHHhCCccee----eccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcC
Q 024315          155 ----DRVENIR---RI-----GEVAKLFADAGVICI----ACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD  217 (269)
Q Consensus       155 ----~~~~~~~---~l-----~~~a~~~~~~g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~  217 (269)
                          ...+++.   ..     ......+...++...    ....++++++| ..+++++.++++  +++|+|+..++...
T Consensus        85 ~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l--lllDEPt~~LD~~~  162 (207)
T PRK13539         85 KPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPI--WILDEPTAALDAAA  162 (207)
T ss_pred             CCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCE--EEEeCCcccCCHHH
Confidence                0011111   00     112233444444321    22345666666 689999999999  99999999999888


Q ss_pred             hhhHHHHHh
Q 024315          218 PKGLYKLAR  226 (269)
Q Consensus       218 ~k~l~~~~r  226 (269)
                      .+.+.+.++
T Consensus       163 ~~~l~~~l~  171 (207)
T PRK13539        163 VALFAELIR  171 (207)
T ss_pred             HHHHHHHHH
Confidence            888766554

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.51  E-value=1.1e-13  Score=118.67  Aligned_cols=145  Identities=15%  Similarity=0.166  Sum_probs=96.9

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc---cccCCCCChhh-
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---LNRDLSFKAED-  155 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~---l~~~~g~~~~~-  155 (269)
                      .++.+.+......+.+++++++|++++|+|+||||||||+++|++.+ .+.+|.+.++|.++...   .++.++|.+++ 
T Consensus         5 ~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~   83 (200)
T PRK13540          5 IELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLL-NPEKGEILFERQSIKKDLCTYQKQLCFVGHRS   83 (200)
T ss_pred             EEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCeeEEECCCccccCHHHHHhheEEecccc
Confidence            34555555556788899999999999999999999999999999987 46789999999876421   11222222111 


Q ss_pred             -------HHHHHHHH-------HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhc
Q 024315          156 -------RVENIRRI-------GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEAR  216 (269)
Q Consensus       156 -------~~~~~~~l-------~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R  216 (269)
                             -.+++...       ......+...++..    .....++++++| ..+++++.++++  +++|+|+..++..
T Consensus        84 ~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~--lilDEP~~~LD~~  161 (200)
T PRK13540         84 GINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKL--WLLDEPLVALDEL  161 (200)
T ss_pred             ccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCE--EEEeCCCcccCHH
Confidence                   11111100       01222223223311    122345566655 699999999999  9999999999999


Q ss_pred             ChhhHHHHHhc
Q 024315          217 DPKGLYKLARE  227 (269)
Q Consensus       217 ~~k~l~~~~r~  227 (269)
                      ..+.+.+.+++
T Consensus       162 ~~~~l~~~l~~  172 (200)
T PRK13540        162 SLLTIITKIQE  172 (200)
T ss_pred             HHHHHHHHHHH
Confidence            88887766654

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.51  E-value=1.3e-13  Score=121.20  Aligned_cols=146  Identities=18%  Similarity=0.086  Sum_probs=98.2

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhc-cCCccEEEECCeecCc----c-cccCCCCCh
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDNCRH----G-LNRDLSFKA  153 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~-~~~~g~i~l~g~~~~~----~-l~~~~g~~~  153 (269)
                      .++.+.+.......++++.+++|++++|+|+||||||||+++|++.++ .+.+|.|.++|.++..    . .+..++|.+
T Consensus         4 ~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~   83 (243)
T TIGR01978         4 KDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAF   83 (243)
T ss_pred             eeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeee
Confidence            355666655567788999999999999999999999999999999852 4678999999987542    1 111233322


Q ss_pred             hhH--------HHHHHH-------------------HHHHHHHHHhCCcc-e----eec-cCChHHHHH-HHHHHhCCCC
Q 024315          154 EDR--------VENIRR-------------------IGEVAKLFADAGVI-C----IAC-LISPYRKDR-DACRSMLPEG  199 (269)
Q Consensus       154 ~~~--------~~~~~~-------------------l~~~a~~~~~~g~~-~----iv~-~~~~~~~~r-~~ar~ll~~~  199 (269)
                      ++.        .+.+..                   ...+...+...++. .    .+. ..++++++| ..+++++.++
T Consensus        84 q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p  163 (243)
T TIGR01978        84 QYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEP  163 (243)
T ss_pred             ccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCC
Confidence            221        010000                   01122233333442 1    122 256666666 6999999999


Q ss_pred             CccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          200 DFIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       200 ~~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      ++  +++|||+..++....+.+++.+++
T Consensus       164 ~l--lllDEPt~~LD~~~~~~l~~~l~~  189 (243)
T TIGR01978       164 KL--AILDEIDSGLDIDALKIVAEGINR  189 (243)
T ss_pred             CE--EEecCCcccCCHHHHHHHHHHHHH
Confidence            99  999999999999988887766553

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.51  E-value=1.6e-13  Score=124.11  Aligned_cols=146  Identities=18%  Similarity=0.209  Sum_probs=98.4

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc----CCccEEEECCeecCc------ccccCC
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH------GLNRDL  149 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~----~~~g~i~l~g~~~~~------~l~~~~  149 (269)
                      .++.+.+......+++++.+.+|++++|+|+||||||||++.|++.+..    +.+|.|.++|.++..      .++..+
T Consensus        43 ~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i  122 (285)
T PRK14254         43 RDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRI  122 (285)
T ss_pred             EEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccE
Confidence            4566665555677889999999999999999999999999999998853    468999999987631      112222


Q ss_pred             CCChhh-------HHHHHHH-----------HHHHHHHHHhCCcc--------eeeccCChHHHHH-HHHHHhCCCCCcc
Q 024315          150 SFKAED-------RVENIRR-----------IGEVAKLFADAGVI--------CIACLISPYRKDR-DACRSMLPEGDFI  202 (269)
Q Consensus       150 g~~~~~-------~~~~~~~-----------l~~~a~~~~~~g~~--------~iv~~~~~~~~~r-~~ar~ll~~~~~~  202 (269)
                      +|.+++       ..+++..           ..++...+...++.        .-+..+++++++| ..+++++.++++ 
T Consensus       123 ~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~l-  201 (285)
T PRK14254        123 GMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEV-  201 (285)
T ss_pred             EEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCE-
Confidence            222221       1111110           01122223333331        1233456666666 699999999999 


Q ss_pred             EEEEeCChhHHHhcChhhHHHHHhc
Q 024315          203 EVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       203 ~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                       +++|+|+..++....+.+++.+++
T Consensus       202 -LLLDEPts~LD~~~~~~l~~~L~~  225 (285)
T PRK14254        202 -ILMDEPASALDPVATSKIEDLIEE  225 (285)
T ss_pred             -EEEeCCCCCCCHHHHHHHHHHHHH
Confidence             999999999999888887766654

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.51  E-value=1.1e-13  Score=123.45  Aligned_cols=146  Identities=20%  Similarity=0.211  Sum_probs=98.6

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc----CCccEEEECCeecCc------ccccCC
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH------GLNRDL  149 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~----~~~g~i~l~g~~~~~------~l~~~~  149 (269)
                      .++.+.+......+++++.+++|++++|+|+||||||||++.|+|.+.+    +.+|.|.++|.++..      .++..+
T Consensus        17 ~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i   96 (260)
T PRK10744         17 RNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKV   96 (260)
T ss_pred             EEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcce
Confidence            4566666555677889999999999999999999999999999998741    358999999987631      122233


Q ss_pred             CCChhhH-------HHHHHH------------H-HHHHHHHHhCCc--------ceeeccCChHHHHH-HHHHHhCCCCC
Q 024315          150 SFKAEDR-------VENIRR------------I-GEVAKLFADAGV--------ICIACLISPYRKDR-DACRSMLPEGD  200 (269)
Q Consensus       150 g~~~~~~-------~~~~~~------------l-~~~a~~~~~~g~--------~~iv~~~~~~~~~r-~~ar~ll~~~~  200 (269)
                      +|.+++.       .+++..            . .++...+...++        .......++++++| ..+++++.+++
T Consensus        97 ~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~  176 (260)
T PRK10744         97 GMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPE  176 (260)
T ss_pred             EEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCC
Confidence            3333221       111100            0 112222333332        11233456666666 68999999999


Q ss_pred             ccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          201 FIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       201 ~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      +  +++|+|+..++....+.+++.+++
T Consensus       177 l--llLDEPt~~LD~~~~~~l~~~L~~  201 (260)
T PRK10744        177 V--LLLDEPCSALDPISTGRIEELITE  201 (260)
T ss_pred             E--EEEcCCCccCCHHHHHHHHHHHHH
Confidence            9  999999999999888887766654

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.51  E-value=8.5e-14  Score=125.96  Aligned_cols=144  Identities=17%  Similarity=0.159  Sum_probs=100.3

Q ss_pred             cceEEeeCc-----eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--------ccc
Q 024315           80 TNILWHKNS-----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--------GLN  146 (269)
Q Consensus        80 ~~~~~~~~~-----v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--------~l~  146 (269)
                      .++.+.+..     ....+++++++++|++++|+|+||||||||+++|++.+ .+..|.|.++|.++..        .++
T Consensus         6 ~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~-~p~~G~i~~~g~~i~~~~~~~~~~~~~   84 (286)
T PRK13646          6 DNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALL-KPTTGTVTVDDITITHKTKDKYIRPVR   84 (286)
T ss_pred             EEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEECccccccchHHHHH
Confidence            345555532     34778889999999999999999999999999999987 5678999999987642        123


Q ss_pred             cCCCCChhhH---------HHHHHH------------HHHHHHHHHhCCcc-e----eeccCChHHHHH-HHHHHhCCCC
Q 024315          147 RDLSFKAEDR---------VENIRR------------IGEVAKLFADAGVI-C----IACLISPYRKDR-DACRSMLPEG  199 (269)
Q Consensus       147 ~~~g~~~~~~---------~~~~~~------------l~~~a~~~~~~g~~-~----iv~~~~~~~~~r-~~ar~ll~~~  199 (269)
                      ..++|.+|+.         .+.+..            ...+...+...++. .    .+..+++++++| ..+++++.++
T Consensus        85 ~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p  164 (286)
T PRK13646         85 KRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNP  164 (286)
T ss_pred             hheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCC
Confidence            3455554432         111110            01122333444542 1    234456677666 6899999999


Q ss_pred             CccEEEEeCChhHHHhcChhhHHHHHh
Q 024315          200 DFIEVFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       200 ~~~~i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      ++  +++|+|+..++......+.+.++
T Consensus       165 ~i--lllDEPt~~LD~~~~~~l~~~l~  189 (286)
T PRK13646        165 DI--IVLDEPTAGLDPQSKRQVMRLLK  189 (286)
T ss_pred             CE--EEEECCcccCCHHHHHHHHHHHH
Confidence            99  99999999999999888766554

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.50  E-value=5.7e-14  Score=138.65  Aligned_cols=133  Identities=20%  Similarity=0.241  Sum_probs=93.3

Q ss_pred             eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhH-------HHH
Q 024315           91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDR-------VEN  159 (269)
Q Consensus        91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~-------~~~  159 (269)
                      ..++.++++++|+.++|+|+||||||||++.|.|.+ + .+|.|.++|.++..    .+++.++|.+|+-       +++
T Consensus       365 vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p-~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eN  442 (588)
T PRK11174        365 LAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P-YQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDN  442 (588)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C-CCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHH
Confidence            457779999999999999999999999999999988 4 58999999988753    2333334333321       111


Q ss_pred             H------------HHHHHHH---HHHH--hCCccee----eccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcC
Q 024315          160 I------------RRIGEVA---KLFA--DAGVICI----ACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD  217 (269)
Q Consensus       160 ~------------~~l~~~a---~~~~--~~g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~  217 (269)
                      +            ....+.+   ....  ..|....    ...++++++|| ..+|+++.++++  +.+|||++.+|...
T Consensus       443 I~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~I--liLDE~TSaLD~~t  520 (588)
T PRK11174        443 VLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQL--LLLDEPTASLDAHS  520 (588)
T ss_pred             hhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCE--EEEeCCccCCCHHH
Confidence            1            1111111   1111  1133222    33467888888 799999999999  99999999999999


Q ss_pred             hhhHHHHHhc
Q 024315          218 PKGLYKLARE  227 (269)
Q Consensus       218 ~k~l~~~~r~  227 (269)
                      .+.+.+.+++
T Consensus       521 e~~i~~~l~~  530 (588)
T PRK11174        521 EQLVMQALNA  530 (588)
T ss_pred             HHHHHHHHHH
Confidence            8887766553

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.50  E-value=1.5e-13  Score=121.47  Aligned_cols=146  Identities=16%  Similarity=0.194  Sum_probs=99.9

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhc--cCCccEEEECCeecCc----ccccCCCCCh
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH--WRGKLTYILDGDNCRH----GLNRDLSFKA  153 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~--~~~~g~i~l~g~~~~~----~l~~~~g~~~  153 (269)
                      .++.+.+......++.++.+.+|++++|+|+||||||||+++|++.+.  .+.+|.|.++|.++..    ..+..++|.+
T Consensus         6 ~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~   85 (246)
T PRK14269          6 TNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVF   85 (246)
T ss_pred             eeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEe
Confidence            456666655567788999999999999999999999999999999874  2568999999987642    1122233322


Q ss_pred             hh-------HHHHHHH-------------H-HHHHHHHHhCCcc--------eeeccCChHHHHH-HHHHHhCCCCCccE
Q 024315          154 ED-------RVENIRR-------------I-GEVAKLFADAGVI--------CIACLISPYRKDR-DACRSMLPEGDFIE  203 (269)
Q Consensus       154 ~~-------~~~~~~~-------------l-~~~a~~~~~~g~~--------~iv~~~~~~~~~r-~~ar~ll~~~~~~~  203 (269)
                      ++       ..+++..             . ......+...++.        ......++++++| ..+++++.++++  
T Consensus        86 q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~l--  163 (246)
T PRK14269         86 QQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKL--  163 (246)
T ss_pred             cCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCE--
Confidence            22       1111100             0 0122233344442        1223456666666 689999999999  


Q ss_pred             EEEeCChhHHHhcChhhHHHHHhc
Q 024315          204 VFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       204 i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      +++|+|+..++....+.+.+.+++
T Consensus       164 llLDEP~~~LD~~~~~~l~~~l~~  187 (246)
T PRK14269        164 LLLDEPTSALDPISSGVIEELLKE  187 (246)
T ss_pred             EEEcCCcccCCHHHHHHHHHHHHH
Confidence            999999999999888887766654

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.50  E-value=9.7e-14  Score=136.57  Aligned_cols=143  Identities=21%  Similarity=0.250  Sum_probs=100.4

Q ss_pred             ceEEeeCceeec------cCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCC
Q 024315           81 NILWHKNSVDKR------DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLS  150 (269)
Q Consensus        81 ~~~~~~~~v~~~------~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g  150 (269)
                      .+++.+..+.+.      ++.++++++|+.++|+|+|||||||+++.|.+.+ ++.+|.|++||.+++.    .+++.++
T Consensus       328 ~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~-~~~~G~I~idg~dI~~i~~~~lr~~I~  406 (567)
T COG1132         328 SIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLY-DPTSGEILIDGIDIRDISLDSLRKRIG  406 (567)
T ss_pred             eEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccC-CCCCCeEEECCEehhhcCHHHHHHhcc
Confidence            355665555554      5579999999999999999999999999999988 5679999999988874    3444444


Q ss_pred             CChhhH-------HH------------HHHHHHHHH---HHHHh--CCcceee----ccCChHHHHH-HHHHHhCCCCCc
Q 024315          151 FKAEDR-------VE------------NIRRIGEVA---KLFAD--AGVICIA----CLISPYRKDR-DACRSMLPEGDF  201 (269)
Q Consensus       151 ~~~~~~-------~~------------~~~~l~~~a---~~~~~--~g~~~iv----~~~~~~~~~r-~~ar~ll~~~~~  201 (269)
                      +.+|+-       .+            .+.+..+.+   .....  .|....+    ...+++++|| ..+|+++.++++
T Consensus       407 ~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~I  486 (567)
T COG1132         407 IVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPI  486 (567)
T ss_pred             EEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCE
Confidence            444321       11            111111111   11111  1443333    3457788887 799999999999


Q ss_pred             cEEEEeCChhHHHhcChhhHHHHHh
Q 024315          202 IEVFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       202 ~~i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                        +.+|||+..+|....+.+.+..+
T Consensus       487 --LILDEaTSalD~~tE~~I~~~l~  509 (567)
T COG1132         487 --LILDEATSALDTETEALIQDALK  509 (567)
T ss_pred             --EEEeccccccCHHhHHHHHHHHH
Confidence              99999999999999888766654

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.50  E-value=7.5e-14  Score=133.14  Aligned_cols=144  Identities=20%  Similarity=0.280  Sum_probs=104.1

Q ss_pred             cceEEeeCceeec------cCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCC
Q 024315           80 TNILWHKNSVDKR------DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDL  149 (269)
Q Consensus        80 ~~~~~~~~~v~~~------~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~  149 (269)
                      ..+.|.++++++.      ..+|+++++|+-++|+|+|||||||++++|.+++.  .+|.|++||.++..    .+|+-+
T Consensus       350 ~~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d--~sG~I~IdG~dik~~~~~SlR~~I  427 (591)
T KOG0057|consen  350 GSIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD--YSGSILIDGQDIKEVSLESLRQSI  427 (591)
T ss_pred             CcEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc--cCCcEEECCeeHhhhChHHhhhhe
Confidence            3456665555554      45699999999999999999999999999999874  68999999999864    677778


Q ss_pred             CCChhhHH-------HHHHH------HHHHHHHHHhC-----------Ccc----eeeccCChHHHHH-HHHHHhCCCCC
Q 024315          150 SFKAEDRV-------ENIRR------IGEVAKLFADA-----------GVI----CIACLISPYRKDR-DACRSMLPEGD  200 (269)
Q Consensus       150 g~~~~~~~-------~~~~~------l~~~a~~~~~~-----------g~~----~iv~~~~~~~~~r-~~ar~ll~~~~  200 (269)
                      |+.||+-.       .++..      -.++......+           |..    .-...++++++|| ..+|+++++++
T Consensus       428 g~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~  507 (591)
T KOG0057|consen  428 GVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAP  507 (591)
T ss_pred             eEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCC
Confidence            88887541       11100      01111111222           221    2234567788887 69999999999


Q ss_pred             ccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          201 FIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       201 ~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      +  +++|||+..++......+.+.+.+
T Consensus       508 I--l~~DEaTS~LD~~TE~~i~~~i~~  532 (591)
T KOG0057|consen  508 I--LLLDEATSALDSETEREILDMIMD  532 (591)
T ss_pred             e--EEecCcccccchhhHHHHHHHHHH
Confidence            9  999999999999888887766654

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.50  E-value=8.2e-14  Score=122.34  Aligned_cols=144  Identities=19%  Similarity=0.236  Sum_probs=94.8

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-----cccCCCCChh
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAE  154 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-----l~~~~g~~~~  154 (269)
                      .++.+.+......+.+++++++|++++|+|+||||||||+++|++.+ .+.+|.+.++|.++...     .+..++|.++
T Consensus         9 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q   87 (237)
T PRK11614          9 DKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDP-RATSGRIVFDGKDITDWQTAKIMREAVAIVPE   87 (237)
T ss_pred             EeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCC-CCCCceEEECCEecCCCCHHHHHHhCEEEecc
Confidence            45666655555778889999999999999999999999999999988 46689999999875320     1112222221


Q ss_pred             hH--------HHHH-------------HHHHHHHHHHHhC--CcceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCCh
Q 024315          155 DR--------VENI-------------RRIGEVAKLFADA--GVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPL  210 (269)
Q Consensus       155 ~~--------~~~~-------------~~l~~~a~~~~~~--g~~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~  210 (269)
                      +.        .+++             ..+......+...  .........++++++| ..+++++.++++  +++|+|+
T Consensus        88 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~i--lllDEPt  165 (237)
T PRK11614         88 GRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRL--LLLDEPS  165 (237)
T ss_pred             CcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCE--EEEcCcc
Confidence            10        0111             0011111111000  0111233456666666 689999999999  9999999


Q ss_pred             hHHHhcChhhHHHHHh
Q 024315          211 QVCEARDPKGLYKLAR  226 (269)
Q Consensus       211 ~~l~~R~~k~l~~~~r  226 (269)
                      ..++....+.+++.++
T Consensus       166 ~~LD~~~~~~l~~~l~  181 (237)
T PRK11614        166 LGLAPIIIQQIFDTIE  181 (237)
T ss_pred             ccCCHHHHHHHHHHHH
Confidence            9999998888776654

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.50  E-value=1.3e-13  Score=123.26  Aligned_cols=144  Identities=20%  Similarity=0.242  Sum_probs=98.3

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhh
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAED  155 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~  155 (269)
                      .++.+.+......+++++.+++|++++|+|+||||||||+++|+|.++ +.+|.|.++|.++..    .++..++|.+++
T Consensus        11 ~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~   89 (265)
T PRK10253         11 EQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT-PAHGHVWLDGEHIQHYASKEVARRIGLLAQN   89 (265)
T ss_pred             EEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC-CCCcEEEECCEEhhhCCHHHHhhheEEeecc
Confidence            566777766667889999999999999999999999999999999884 668999999987532    111122222221


Q ss_pred             H--------HHHHHH----------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEE
Q 024315          156 R--------VENIRR----------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFM  206 (269)
Q Consensus       156 ~--------~~~~~~----------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~l  206 (269)
                      .        .+++..                ...+...+...++..    .+...++++++| ..+++++.++++  +++
T Consensus        90 ~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~l--lll  167 (265)
T PRK10253         90 ATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAI--MLL  167 (265)
T ss_pred             CcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCE--EEE
Confidence            0        011100                001122233334322    233456666666 699999999999  999


Q ss_pred             eCChhHHHhcChhhHHHHHh
Q 024315          207 DVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       207 d~p~~~l~~R~~k~l~~~~r  226 (269)
                      |+|+..++....+.+++.++
T Consensus       168 DEPt~gLD~~~~~~l~~~L~  187 (265)
T PRK10253        168 DEPTTWLDISHQIDLLELLS  187 (265)
T ss_pred             eCccccCCHHHHHHHHHHHH
Confidence            99999999998888776654

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.50  E-value=3.7e-14  Score=142.96  Aligned_cols=144  Identities=19%  Similarity=0.201  Sum_probs=99.6

Q ss_pred             ceEEeeCc--eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChh
Q 024315           81 NILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAE  154 (269)
Q Consensus        81 ~~~~~~~~--v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~  154 (269)
                      +++|.+.+  ....++.++++++|+.++|+|+||||||||++.|+|.+ +|.+|.|.+||.++..    .+++.+++.+|
T Consensus       482 ~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~-~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q  560 (710)
T TIGR03796       482 NITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLY-QPWSGEILFDGIPREEIPREVLANSVAMVDQ  560 (710)
T ss_pred             EEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEeHHHCCHHHHHhheeEEec
Confidence            44444432  23456779999999999999999999999999999988 5779999999988753    33444444444


Q ss_pred             hH-------HHHHH------------HHHHHH---HHHH--hCCccee----eccCChHHHHH-HHHHHhCCCCCccEEE
Q 024315          155 DR-------VENIR------------RIGEVA---KLFA--DAGVICI----ACLISPYRKDR-DACRSMLPEGDFIEVF  205 (269)
Q Consensus       155 ~~-------~~~~~------------~l~~~a---~~~~--~~g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~i~  205 (269)
                      +.       ++++.            ...+.+   ....  ..|....    ....+++++|| ..+|+++.++++  ++
T Consensus       561 ~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~i--li  638 (710)
T TIGR03796       561 DIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSI--LI  638 (710)
T ss_pred             CChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCE--EE
Confidence            32       11111            111111   1111  1133222    23457788877 699999999999  99


Q ss_pred             EeCChhHHHhcChhhHHHHHhc
Q 024315          206 MDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       206 ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      +|||++.+|....+.+++..+.
T Consensus       639 LDEptS~LD~~te~~i~~~l~~  660 (710)
T TIGR03796       639 LDEATSALDPETEKIIDDNLRR  660 (710)
T ss_pred             EECccccCCHHHHHHHHHHHHh
Confidence            9999999999999988877765

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.50  E-value=1.7e-13  Score=119.31  Aligned_cols=143  Identities=20%  Similarity=0.186  Sum_probs=96.2

Q ss_pred             ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhh-----
Q 024315           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED-----  155 (269)
Q Consensus        81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~-----  155 (269)
                      ++.+.+......+..++.+.+|++++|+|+||||||||++.|+|.+ ++.+|.+.++|.++...-...+++.+++     
T Consensus         5 ~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~   83 (223)
T TIGR03740         5 NLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGIL-RPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYE   83 (223)
T ss_pred             eEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEeccccccccEEEEcCCCCccc
Confidence            4555555555678889999999999999999999999999999988 4668999999976532111112222111     


Q ss_pred             ---HHHHHHH---H-----HHHHHHHHhCCccee----eccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChh
Q 024315          156 ---RVENIRR---I-----GEVAKLFADAGVICI----ACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPK  219 (269)
Q Consensus       156 ---~~~~~~~---l-----~~~a~~~~~~g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k  219 (269)
                         ..+++..   .     ......+...++...    +...++++++| ..+++++.++++  +++|+|+..++....+
T Consensus        84 ~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~l--lllDEP~~~LD~~~~~  161 (223)
T TIGR03740        84 NLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKL--LILDEPTNGLDPIGIQ  161 (223)
T ss_pred             cCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCE--EEECCCccCCCHHHHH
Confidence               1111110   0     122233334444321    23346666666 689999999999  9999999999999888


Q ss_pred             hHHHHHh
Q 024315          220 GLYKLAR  226 (269)
Q Consensus       220 ~l~~~~r  226 (269)
                      .+.+.++
T Consensus       162 ~l~~~L~  168 (223)
T TIGR03740       162 ELRELIR  168 (223)
T ss_pred             HHHHHHH
Confidence            8776654

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.50  E-value=2.9e-13  Score=114.76  Aligned_cols=135  Identities=19%  Similarity=0.238  Sum_probs=91.0

Q ss_pred             ceEEeeC--ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-ccccCC--------
Q 024315           81 NILWHKN--SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-GLNRDL--------  149 (269)
Q Consensus        81 ~~~~~~~--~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-~l~~~~--------  149 (269)
                      ++..++.  ++++.+++|+.+.+|++++++||||||||||++.++++. .|..|.|.+++..+.. +..+..        
T Consensus         8 ~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~-~P~~G~i~l~~r~i~gPgaergvVFQ~~~Ll   86 (259)
T COG4525           8 HLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFV-TPSRGSIQLNGRRIEGPGAERGVVFQNEALL   86 (259)
T ss_pred             heEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCc-CcccceEEECCEeccCCCccceeEeccCccc
Confidence            3444443  455889999999999999999999999999999999988 5779999999987652 111110        


Q ss_pred             ----------------CCChhhHHHHHHHHHHHHHH--HHhCCcceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCCh
Q 024315          150 ----------------SFKAEDRVENIRRIGEVAKL--FADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPL  210 (269)
Q Consensus       150 ----------------g~~~~~~~~~~~~l~~~a~~--~~~~g~~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~  210 (269)
                                      |+...+|++..   .+....  ++++.-..++ ..+++.+|| -++|++..+|++  +++|+|+
T Consensus        87 PWl~~~dNvafgL~l~Gi~k~~R~~~a---~q~l~~VgL~~~~~~~i~-qLSGGmrQRvGiARALa~eP~~--LlLDEPf  160 (259)
T COG4525          87 PWLNVIDNVAFGLQLRGIEKAQRREIA---HQMLALVGLEGAEHKYIW-QLSGGMRQRVGIARALAVEPQL--LLLDEPF  160 (259)
T ss_pred             hhhHHHHHHHHHHHhcCCCHHHHHHHH---HHHHHHhCcccccccceE-eecchHHHHHHHHHHhhcCcce--EeecCch
Confidence                            12222222111   111111  1222222233 445556666 599999999999  9999999


Q ss_pred             hHHHhcChhhHH
Q 024315          211 QVCEARDPKGLY  222 (269)
Q Consensus       211 ~~l~~R~~k~l~  222 (269)
                      ..++.-.++.+.
T Consensus       161 gAlDa~tRe~mQ  172 (259)
T COG4525         161 GALDALTREQMQ  172 (259)
T ss_pred             hhHHHHHHHHHH
Confidence            999987776644

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.50  E-value=1.6e-13  Score=120.72  Aligned_cols=145  Identities=14%  Similarity=0.207  Sum_probs=98.1

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-----cccCCCCChh
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAE  154 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-----l~~~~g~~~~  154 (269)
                      .++.+.+......+.+++++.+|++++|+|+||||||||+++|+|.++ +.+|.+.++|.++...     .+..++|.++
T Consensus         6 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q   84 (242)
T TIGR03411         6 EGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR-PDEGSVLFGGTDLTGLPEHQIARAGIGRKFQ   84 (242)
T ss_pred             EeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCCeEEECCeecCCCCHHHHHhcCeeEecc
Confidence            355555555567888999999999999999999999999999999874 6689999999876320     1112232222


Q ss_pred             hH--------HHHHHH--------------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCc
Q 024315          155 DR--------VENIRR--------------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDF  201 (269)
Q Consensus       155 ~~--------~~~~~~--------------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~  201 (269)
                      +.        .+++..                    -..+...+...++..    .+...++++++| ..+++++.++++
T Consensus        85 ~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~  164 (242)
T TIGR03411        85 KPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKL  164 (242)
T ss_pred             ccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence            11        111110                    011222333334422    223346666666 689999999999


Q ss_pred             cEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          202 IEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       202 ~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                        +++|+|+..++....+.+++.+++
T Consensus       165 --lllDEPt~~LD~~~~~~l~~~l~~  188 (242)
T TIGR03411       165 --LLLDEPVAGMTDEETEKTAELLKS  188 (242)
T ss_pred             --EEecCCccCCCHHHHHHHHHHHHH
Confidence              999999999999988887766553

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.50  E-value=6e-14  Score=130.98  Aligned_cols=136  Identities=21%  Similarity=0.237  Sum_probs=96.5

Q ss_pred             ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----cc----ccCCCCChhh----
Q 024315           88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GL----NRDLSFKAED----  155 (269)
Q Consensus        88 ~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l----~~~~g~~~~~----  155 (269)
                      .....++++|.+.+|++++|+|+||||||||+++|+|++ ++.+|.|+++|.++..    .+    +..++|..|.    
T Consensus         5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~-~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~   83 (363)
T TIGR01186         5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLI-EPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALF   83 (363)
T ss_pred             CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCC-CCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCC
Confidence            445678889999999999999999999999999999988 5679999999988753    11    2233333221    


Q ss_pred             ----HHHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHH
Q 024315          156 ----RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCE  214 (269)
Q Consensus       156 ----~~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~  214 (269)
                          ..+++..            ...+...+...++..    .+..+++++++| ..+++++.++++  +++|+|+..++
T Consensus        84 ~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~i--LLlDEP~saLD  161 (363)
T TIGR01186        84 PHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDI--LLMDEAFSALD  161 (363)
T ss_pred             CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCcccCC
Confidence                1121111            112223344444422    234457777777 699999999999  99999999999


Q ss_pred             hcChhhHHHHHh
Q 024315          215 ARDPKGLYKLAR  226 (269)
Q Consensus       215 ~R~~k~l~~~~r  226 (269)
                      ...++.+++.++
T Consensus       162 ~~~r~~l~~~l~  173 (363)
T TIGR01186       162 PLIRDSMQDELK  173 (363)
T ss_pred             HHHHHHHHHHHH
Confidence            998888776544

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]

Probab=99.50  E-value=3.4e-13  Score=109.98  Aligned_cols=153  Identities=25%  Similarity=0.339  Sum_probs=119.3

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-----ccccCCCCChhhHHHHHHHHHHHHHHHHhCCcce
Q 024315          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----GLNRDLSFKAEDRVENIRRIGEVAKLFADAGVIC  177 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-----~l~~~~g~~~~~~~~~~~~l~~~a~~~~~~g~~~  177 (269)
                      -++.++|.+||||||++++|...|.-+     +++||++..     -+.+++.+++++|..|+..+......-...+-.+
T Consensus        13 ~~i~vmGvsGsGKSTigk~L~~~l~~~-----F~dgDd~Hp~~NveKM~~GipLnD~DR~pWL~~i~~~~~~~l~~~q~v   87 (191)
T KOG3354|consen   13 YVIVVMGVSGSGKSTIGKALSEELGLK-----FIDGDDLHPPANVEKMTQGIPLNDDDRWPWLKKIAVELRKALASGQGV   87 (191)
T ss_pred             eeEEEEecCCCChhhHHHHHHHHhCCc-----ccccccCCCHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHhhcCCeE
Confidence            378899999999999999999998644     899999874     3456778999999999888766555444467778


Q ss_pred             eeccCChHHHHHHHHHHhCC--------CCCccEEEEeCChhHHHhcChhhHHHHHhcCccccccccc---cccCCCCCC
Q 024315          178 IACLISPYRKDRDACRSMLP--------EGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGID---DPYEPPLNC  246 (269)
Q Consensus       178 iv~~~~~~~~~r~~ar~ll~--------~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~~i~---~~~e~p~~~  246 (269)
                      ++++++..++.|++++..+.        +..+..+++..+.+++..|.      .-|.|+++....+.   +..|+|+.+
T Consensus        88 VlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl------~~R~gHFMp~~lleSQf~~LE~p~~~  161 (191)
T KOG3354|consen   88 VLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRL------KKRKGHFMPADLLESQFATLEAPDAD  161 (191)
T ss_pred             EEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHH------hhcccccCCHHHHHHHHHhccCCCCC
Confidence            88999999999999998655        22455589999999999887      66788888865555   556788877


Q ss_pred             C---eEEEcCCCcCHHHHHH-HHhh
Q 024315          247 E---VGVHVWYRFELAETWR-ITKW  267 (269)
Q Consensus       247 e---~~id~~~~~~~~~~~~-i~~~  267 (269)
                      |   +.|+.+ ..+++++.. |.|-
T Consensus       162 e~div~isv~-~~~~e~iv~tI~k~  185 (191)
T KOG3354|consen  162 EEDIVTISVK-TYSVEEIVDTIVKM  185 (191)
T ss_pred             ccceEEEeec-cCCHHHHHHHHHHH
Confidence            6   567764 477888877 6553

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.50  E-value=1.2e-13  Score=122.48  Aligned_cols=145  Identities=14%  Similarity=0.169  Sum_probs=97.4

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----------------
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----------------  143 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----------------  143 (269)
                      .++.+.+......+++++++++|++++|+|+||||||||++.|++.+ .+.+|.+.++|.++..                
T Consensus         4 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~   82 (252)
T TIGR03005         4 SDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLE-PIDEGQIQVEGEQLYHMPGRNGPLVPADEKHL   82 (252)
T ss_pred             EEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEccccccccccccccchhHH
Confidence            34555555556778899999999999999999999999999999987 4668999999987631                


Q ss_pred             -ccccCCCCChhh--------HHHHHHH-------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhC
Q 024315          144 -GLNRDLSFKAED--------RVENIRR-------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSML  196 (269)
Q Consensus       144 -~l~~~~g~~~~~--------~~~~~~~-------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll  196 (269)
                       .++..+++..++        ..+++..             ...+...+...++..    .....++++++| ..+++++
T Consensus        83 ~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~  162 (252)
T TIGR03005        83 RQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALA  162 (252)
T ss_pred             HHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHH
Confidence             112222222221        0111110             011222333344422    223346666666 6899999


Q ss_pred             CCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          197 PEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       197 ~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      .++++  +++|+|+..++......+++.+++
T Consensus       163 ~~p~l--lllDEP~~~LD~~~~~~l~~~l~~  191 (252)
T TIGR03005       163 MRPKV--MLFDEVTSALDPELVGEVLNVIRR  191 (252)
T ss_pred             cCCCE--EEEeCCcccCCHHHHHHHHHHHHH
Confidence            99998  999999999999888877766553

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.50  E-value=1e-13  Score=124.36  Aligned_cols=143  Identities=20%  Similarity=0.222  Sum_probs=98.9

Q ss_pred             ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----cc----ccCCCCC
Q 024315           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GL----NRDLSFK  152 (269)
Q Consensus        81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l----~~~~g~~  152 (269)
                      ++...+......+++++++.+|++++|+|+||||||||+++|+|.+ .+.+|.+.++|.++..    .+    ...++|.
T Consensus        29 ~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~-~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v  107 (269)
T cd03294          29 EILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLI-EPTSGKVLIDGQDIAAMSRKELRELRRKKISMV  107 (269)
T ss_pred             hhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCeEEEECCEEccccChhhhhhhhcCcEEEE
Confidence            5555566677788999999999999999999999999999999988 4668999999977532    00    1122322


Q ss_pred             hhhH--------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEe
Q 024315          153 AEDR--------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMD  207 (269)
Q Consensus       153 ~~~~--------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld  207 (269)
                      +++.        .+++..            ...+...+...++..    .+...++++++| ..+++++.++++  +++|
T Consensus       108 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~i--llLD  185 (269)
T cd03294         108 FQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDI--LLMD  185 (269)
T ss_pred             ecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCE--EEEc
Confidence            2211        111110            011223334444422    233456677776 699999999999  9999


Q ss_pred             CChhHHHhcChhhHHHHHh
Q 024315          208 VPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       208 ~p~~~l~~R~~k~l~~~~r  226 (269)
                      ||+..++....+.+++.++
T Consensus       186 EPt~~LD~~~~~~l~~~l~  204 (269)
T cd03294         186 EAFSALDPLIRREMQDELL  204 (269)
T ss_pred             CCCccCCHHHHHHHHHHHH
Confidence            9999999998888776654

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.50  E-value=1.3e-13  Score=124.11  Aligned_cols=144  Identities=15%  Similarity=0.185  Sum_probs=99.0

Q ss_pred             cceEEeeC-ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChh
Q 024315           80 TNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAE  154 (269)
Q Consensus        80 ~~~~~~~~-~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~  154 (269)
                      .++++.+. .....+++++.+++|++++|+|+||||||||+++|+|.+ .+.+|.|.++|.++..    .++..++|..+
T Consensus         8 ~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q   86 (274)
T PRK13647          8 EDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIY-LPQRGRVKVMGREVNAENEKWVRSKVGLVFQ   86 (274)
T ss_pred             EEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCceEEEECCEECCCCCHHHHHhhEEEEec
Confidence            45666553 345778889999999999999999999999999999988 4678999999987642    12233444443


Q ss_pred             hH---------HHHHHH-----------H-HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeC
Q 024315          155 DR---------VENIRR-----------I-GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDV  208 (269)
Q Consensus       155 ~~---------~~~~~~-----------l-~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~  208 (269)
                      +.         .+++..           . ..+...+...++..    .+...++++++| ..+++++.++++  +++|+
T Consensus        87 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~l--lllDE  164 (274)
T PRK13647         87 DPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDV--IVLDE  164 (274)
T ss_pred             ChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEEC
Confidence            32         011110           0 11222333334422    233456666666 699999999999  99999


Q ss_pred             ChhHHHhcChhhHHHHHh
Q 024315          209 PLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       209 p~~~l~~R~~k~l~~~~r  226 (269)
                      |+..++....+.+.+.++
T Consensus       165 Pt~~LD~~~~~~l~~~l~  182 (274)
T PRK13647        165 PMAYLDPRGQETLMEILD  182 (274)
T ss_pred             CCcCCCHHHHHHHHHHHH
Confidence            999999998887665554

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.49  E-value=1.5e-13  Score=119.47  Aligned_cols=143  Identities=17%  Similarity=0.210  Sum_probs=96.8

Q ss_pred             ceEEeeCc----eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-------ccccCC
Q 024315           81 NILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-------GLNRDL  149 (269)
Q Consensus        81 ~~~~~~~~----v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-------~l~~~~  149 (269)
                      ++.+.+..    ....+.+++++++|++++|+|+||||||||++.|++.+ ++.+|.|.++|.++..       ..+..+
T Consensus         6 ~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~i   84 (220)
T TIGR02982         6 NLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLR-SVQEGSLKVLGQELYGASEKELVQLRRNI   84 (220)
T ss_pred             EEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEEhHhcCHhHHHHHHhhe
Confidence            45554432    56788899999999999999999999999999999987 4678999999987642       011223


Q ss_pred             CCChhhH--------HHHHH---H----------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccE
Q 024315          150 SFKAEDR--------VENIR---R----------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIE  203 (269)
Q Consensus       150 g~~~~~~--------~~~~~---~----------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~  203 (269)
                      +|.+++.        .+++.   .          .......+...++..    .+...++++++| ..+++++.++++  
T Consensus        85 ~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~i--  162 (220)
T TIGR02982        85 GYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKL--  162 (220)
T ss_pred             EEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCE--
Confidence            3322221        01110   0          011223333344422    233456666666 688999999999  


Q ss_pred             EEEeCChhHHHhcChhhHHHHHh
Q 024315          204 VFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       204 i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      +++|+|+..++....+.+++.++
T Consensus       163 lllDEP~~~LD~~~~~~l~~~l~  185 (220)
T TIGR02982       163 VLADEPTAALDSKSGRDVVELMQ  185 (220)
T ss_pred             EEEeCCCCcCCHHHHHHHHHHHH
Confidence            99999999999998888776654

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.49  E-value=1.9e-13  Score=126.07  Aligned_cols=136  Identities=18%  Similarity=0.203  Sum_probs=95.5

Q ss_pred             eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc---CCccEEEECCeecCcc-------c-ccCCCCChhhH-
Q 024315           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW---RGKLTYILDGDNCRHG-------L-NRDLSFKAEDR-  156 (269)
Q Consensus        89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~---~~~g~i~l~g~~~~~~-------l-~~~~g~~~~~~-  156 (269)
                      +.+.+++||.+++|++++|+|+||||||||+++|++++.+   +.+|.|.++|.++...       + ++.++|.+|+. 
T Consensus        20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~   99 (326)
T PRK11022         20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM   99 (326)
T ss_pred             EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence            5688999999999999999999999999999999998853   2579999999886421       1 11233333321 


Q ss_pred             -------------HHHHHH---------HHHHHHHHHhCCcce-------eeccCChHHHHH-HHHHHhCCCCCccEEEE
Q 024315          157 -------------VENIRR---------IGEVAKLFADAGVIC-------IACLISPYRKDR-DACRSMLPEGDFIEVFM  206 (269)
Q Consensus       157 -------------~~~~~~---------l~~~a~~~~~~g~~~-------iv~~~~~~~~~r-~~ar~ll~~~~~~~i~l  206 (269)
                                   .+.+..         ...+...+...++..       ....+++++++| .++++++.++++  +++
T Consensus       100 ~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~l--lil  177 (326)
T PRK11022        100 TSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKL--LIA  177 (326)
T ss_pred             hhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCE--EEE
Confidence                         111110         011233444555531       233457777777 699999999999  999


Q ss_pred             eCChhHHHhcChhhHHHHHh
Q 024315          207 DVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       207 d~p~~~l~~R~~k~l~~~~r  226 (269)
                      |||+..++...+..+.+.++
T Consensus       178 DEPts~LD~~~~~~il~lL~  197 (326)
T PRK11022        178 DEPTTALDVTIQAQIIELLL  197 (326)
T ss_pred             eCCCCCCCHHHHHHHHHHHH
Confidence            99999999988877665443

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.49  E-value=9.3e-14  Score=123.65  Aligned_cols=144  Identities=22%  Similarity=0.169  Sum_probs=97.5

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee-----cCcc--------cc
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN-----CRHG--------LN  146 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~-----~~~~--------l~  146 (269)
                      .++.+.+......+.+++++.+|++++|+|+||||||||++.|++.+ .+.+|.|.++|.+     +...        .+
T Consensus        10 ~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~   88 (258)
T PRK11701         10 RGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARL-APDAGEVHYRMRDGQLRDLYALSEAERRRLLR   88 (258)
T ss_pred             eeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCEEEECCccccccccccCCHHHHHHHhh
Confidence            45666655555678889999999999999999999999999999988 4668999999976     4210        11


Q ss_pred             cCCCCChhhHH----------HHH------------HHH-HHHHHHHHhCCcc-----eeeccCChHHHHH-HHHHHhCC
Q 024315          147 RDLSFKAEDRV----------ENI------------RRI-GEVAKLFADAGVI-----CIACLISPYRKDR-DACRSMLP  197 (269)
Q Consensus       147 ~~~g~~~~~~~----------~~~------------~~l-~~~a~~~~~~g~~-----~iv~~~~~~~~~r-~~ar~ll~  197 (269)
                      ..++|.+++..          +.+            ... ......+...++.     ..+...++++++| ..+++++.
T Consensus        89 ~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~  168 (258)
T PRK11701         89 TEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVT  168 (258)
T ss_pred             cceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhc
Confidence            22333332210          000            000 1112223333432     1234456677766 68999999


Q ss_pred             CCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315          198 EGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       198 ~~~~~~i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      ++++  +++|+|+..++....+.+.+.++
T Consensus       169 ~p~l--lllDEPt~~LD~~~~~~l~~~l~  195 (258)
T PRK11701        169 HPRL--VFMDEPTGGLDVSVQARLLDLLR  195 (258)
T ss_pred             CCCE--EEEcCCcccCCHHHHHHHHHHHH
Confidence            9999  99999999999988888776654

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.49  E-value=5.3e-14  Score=139.05  Aligned_cols=134  Identities=17%  Similarity=0.156  Sum_probs=93.8

Q ss_pred             eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhH-------HHH
Q 024315           91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDR-------VEN  159 (269)
Q Consensus        91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~-------~~~  159 (269)
                      ..++.++++++|+.++|+|+||||||||++.|.|.+ +|.+|.|.+||.++..    .+++.++|.+|+.       +++
T Consensus       356 il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~-~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~N  434 (592)
T PRK10790        356 VLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYY-PLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLAN  434 (592)
T ss_pred             eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhccc-CCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHH
Confidence            456779999999999999999999999999999988 5678999999988753    3334444444321       111


Q ss_pred             HHHH-----HHHHHHHHhC-----------Ccce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcCh
Q 024315          160 IRRI-----GEVAKLFADA-----------GVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDP  218 (269)
Q Consensus       160 ~~~l-----~~~a~~~~~~-----------g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~  218 (269)
                      +..-     .++.......           |+..    .....+++++|| ..+|+++.++++  +.+|||+..+|....
T Consensus       435 I~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~i--lllDEpts~LD~~t~  512 (592)
T PRK10790        435 VTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQI--LILDEATANIDSGTE  512 (592)
T ss_pred             HHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCE--EEEeCCcccCCHHHH
Confidence            1100     0111111111           2221    223457778777 799999999999  999999999999998


Q ss_pred             hhHHHHHhc
Q 024315          219 KGLYKLARE  227 (269)
Q Consensus       219 k~l~~~~r~  227 (269)
                      +.+++.+++
T Consensus       513 ~~i~~~l~~  521 (592)
T PRK10790        513 QAIQQALAA  521 (592)
T ss_pred             HHHHHHHHH
Confidence            887766653

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.49  E-value=2.2e-13  Score=116.35  Aligned_cols=142  Identities=13%  Similarity=0.089  Sum_probs=91.3

Q ss_pred             ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhh-----
Q 024315           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED-----  155 (269)
Q Consensus        81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~-----  155 (269)
                      ++++.+......+ +++.+++|++++|+|+||||||||+++|++.+ .+.+|.+.++|.++...-....+|.+++     
T Consensus         6 ~l~~~~~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~   83 (195)
T PRK13541          6 QLQFNIEQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIM-QPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKL   83 (195)
T ss_pred             EeeEEECCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCcccChhhhhhEEeccCCcCCCc
Confidence            4444443333334 89999999999999999999999999999987 4678999999977532100111111110     


Q ss_pred             ---HHHHHHH---H----HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhh
Q 024315          156 ---RVENIRR---I----GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKG  220 (269)
Q Consensus       156 ---~~~~~~~---l----~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~  220 (269)
                         -.+++..   .    ..+...+...++..    .+...++++++| ..+++++.++++  +++|+|+..++....+.
T Consensus        84 ~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~--lllDEP~~~LD~~~~~~  161 (195)
T PRK13541         84 EMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDL--WLLDEVETNLSKENRDL  161 (195)
T ss_pred             cCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCcccCCHHHHHH
Confidence               0111110   0    11222223333321    233345566665 689999999999  99999999999988877


Q ss_pred             HHHHHh
Q 024315          221 LYKLAR  226 (269)
Q Consensus       221 l~~~~r  226 (269)
                      +.+.++
T Consensus       162 l~~~l~  167 (195)
T PRK13541        162 LNNLIV  167 (195)
T ss_pred             HHHHHH
Confidence            776654

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=99.49  E-value=4.6e-13  Score=113.08  Aligned_cols=149  Identities=21%  Similarity=0.307  Sum_probs=93.5

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-----cccCCCCChhhHHHHHHHHHHHHHHHH---h
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAEDRVENIRRIGEVAKLFA---D  172 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-----l~~~~g~~~~~~~~~~~~l~~~a~~~~---~  172 (269)
                      +|++++|+|+|||||||+++.|++++..     +.++|+++...     ...++++..+++..+...+......+.   .
T Consensus         2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~-----~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (176)
T PRK09825          2 AGESYILMGVSGSGKSLIGSKIAALFSA-----KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYSLYKKNE   76 (176)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcCC-----EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHHHHhcCC
Confidence            5899999999999999999999998853     48899886531     123445555554445555444443331   2


Q ss_pred             CCcceeeccCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCcccc---ccccccccCCCCCCC--
Q 024315          173 AGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKG---FTGIDDPYEPPLNCE--  247 (269)
Q Consensus       173 ~g~~~iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~---~~~i~~~~e~p~~~e--  247 (269)
                      .|+  ++ ++...+..|+.+++...  +|..||+++|.+.+.+|..++      .++...   +..+...||+|+..|  
T Consensus        77 ~g~--iv-~s~~~~~~R~~~r~~~~--~~~~v~l~a~~~~l~~Rl~~R------~~~~~~~~vl~~Q~~~~e~~~~~e~~  145 (176)
T PRK09825         77 TGF--IV-CSSLKKQYRDILRKSSP--NVHFLWLDGDYETILARMQRR------AGHFMPPDLLQSQFDALERPCADEHD  145 (176)
T ss_pred             CEE--EE-EEecCHHHHHHHHhhCC--CEEEEEEeCCHHHHHHHHhcc------cCCCCCHHHHHHHHHHcCCCCCCcCC
Confidence            233  23 44445566777766543  467799999999999998554      233222   334445567775533  


Q ss_pred             -eEEEcCCCcCHHHHHH-HHhh
Q 024315          248 -VGVHVWYRFELAETWR-ITKW  267 (269)
Q Consensus       248 -~~id~~~~~~~~~~~~-i~~~  267 (269)
                       +.||++  .+++++.. +..+
T Consensus       146 ~~~~d~~--~~~~~~~~~~~~~  165 (176)
T PRK09825        146 IARIDVN--HDIENVTEQCRQA  165 (176)
T ss_pred             eEEEECC--CCHHHHHHHHHHH
Confidence             678874  44444433 4444

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.49  E-value=1.4e-13  Score=122.25  Aligned_cols=146  Identities=18%  Similarity=0.213  Sum_probs=97.7

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc----CCccEEEECCeecCc------ccccCC
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH------GLNRDL  149 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~----~~~g~i~l~g~~~~~------~l~~~~  149 (269)
                      .++.+.+......+.+++++++|++++|+|+||||||||+++|++.+++    +.+|.|.++|.++..      ..+..+
T Consensus        11 ~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i   90 (254)
T PRK14273         11 ENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKI   90 (254)
T ss_pred             eeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhce
Confidence            4566666555567889999999999999999999999999999998864    247999999977531      112223


Q ss_pred             CCChhhH-------HHHHHH------------H-HHHHHHHHhCCc--------ceeeccCChHHHHH-HHHHHhCCCCC
Q 024315          150 SFKAEDR-------VENIRR------------I-GEVAKLFADAGV--------ICIACLISPYRKDR-DACRSMLPEGD  200 (269)
Q Consensus       150 g~~~~~~-------~~~~~~------------l-~~~a~~~~~~g~--------~~iv~~~~~~~~~r-~~ar~ll~~~~  200 (269)
                      +|.+++.       .+++..            . ..+...+...++        .......++++++| ..+++++.+++
T Consensus        91 ~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~  170 (254)
T PRK14273         91 GMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPN  170 (254)
T ss_pred             EEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence            3332221       111100            0 011112222222        11233456677766 68999999999


Q ss_pred             ccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          201 FIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       201 ~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      +  +++|||+..++......+.+.+++
T Consensus       171 l--llLDEPt~~LD~~~~~~l~~~l~~  195 (254)
T PRK14273        171 V--ILMDEPTSALDPISTGKIEELIIN  195 (254)
T ss_pred             E--EEEeCCCcccCHHHHHHHHHHHHH
Confidence            9  999999999999988887766554

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.49  E-value=1.3e-13  Score=123.55  Aligned_cols=144  Identities=19%  Similarity=0.231  Sum_probs=97.7

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-------ccccCCCCC
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-------GLNRDLSFK  152 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-------~l~~~~g~~  152 (269)
                      .++++.+......+++++++.+|++++|+|+||||||||+++|++.++ +.+|.|.++|.++..       .++..++|.
T Consensus        11 ~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v   89 (269)
T PRK11831         11 RGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA-PDHGEILFDGENIPAMSRSRLYTVRKRMSML   89 (269)
T ss_pred             eCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEEccccChhhHHHHhhcEEEE
Confidence            456666655667788999999999999999999999999999999884 668999999976531       011222222


Q ss_pred             hhh--------HHHHHHH----H---------HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEE
Q 024315          153 AED--------RVENIRR----I---------GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFM  206 (269)
Q Consensus       153 ~~~--------~~~~~~~----l---------~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~l  206 (269)
                      +++        ..+++..    .         ..+...+...++..    .+..+++++++| ..+++++.++++  +++
T Consensus        90 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~l--llL  167 (269)
T PRK11831         90 FQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDL--IMF  167 (269)
T ss_pred             ecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEE
Confidence            221        1111110    0         01112233344422    123456677776 688999999998  999


Q ss_pred             eCChhHHHhcChhhHHHHHh
Q 024315          207 DVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       207 d~p~~~l~~R~~k~l~~~~r  226 (269)
                      |||+..++....+.+.+.++
T Consensus       168 DEPt~~LD~~~~~~l~~~l~  187 (269)
T PRK11831        168 DEPFVGQDPITMGVLVKLIS  187 (269)
T ss_pred             cCCCccCCHHHHHHHHHHHH
Confidence            99999999998887766554

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.49  E-value=1.7e-13  Score=123.63  Aligned_cols=144  Identities=16%  Similarity=0.190  Sum_probs=98.6

Q ss_pred             cceEEeeCc---eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCC
Q 024315           80 TNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFK  152 (269)
Q Consensus        80 ~~~~~~~~~---v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~  152 (269)
                      .++++.+..   ....+++++++++|++++|+|+||||||||+++|+|.+ .+.+|.|.++|.++..    .++..++|.
T Consensus         8 ~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~~~~~~~~~~~i~~v   86 (279)
T PRK13650          8 KNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLL-EAESGQIIIDGDLLTEENVWDIRHKIGMV   86 (279)
T ss_pred             EeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEECCcCcHHHHHhhceEE
Confidence            455555532   34678899999999999999999999999999999988 4678999999988742    122334444


Q ss_pred             hhhH---------HHHHHH-----------H-HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEE
Q 024315          153 AEDR---------VENIRR-----------I-GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFM  206 (269)
Q Consensus       153 ~~~~---------~~~~~~-----------l-~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~l  206 (269)
                      .++.         .+.+..           . ..+...+...++..    .+...++++++| ..+++++.++++  +++
T Consensus        87 ~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~l--LlL  164 (279)
T PRK13650         87 FQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKI--IIL  164 (279)
T ss_pred             EcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCE--EEE
Confidence            4332         111110           0 01122333334422    233456666666 699999999999  999


Q ss_pred             eCChhHHHhcChhhHHHHHh
Q 024315          207 DVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       207 d~p~~~l~~R~~k~l~~~~r  226 (269)
                      |+|+..++....+.+.+.++
T Consensus       165 DEPt~~LD~~~~~~l~~~l~  184 (279)
T PRK13650        165 DEATSMLDPEGRLELIKTIK  184 (279)
T ss_pred             ECCcccCCHHHHHHHHHHHH
Confidence            99999999988887665544

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.49  E-value=5.4e-13  Score=114.13  Aligned_cols=144  Identities=19%  Similarity=0.208  Sum_probs=96.3

Q ss_pred             ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc---cccCCCCChhh--
Q 024315           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---LNRDLSFKAED--  155 (269)
Q Consensus        81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~---l~~~~g~~~~~--  155 (269)
                      ++++.+......+.+++.+.+|++++|+|+||||||||++.|++.+ .+.+|.+.++|.++...   .+..++|.+++  
T Consensus         5 ~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~   83 (198)
T TIGR01189         5 NLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLL-RPDSGEVRWNGTALAEQRDEPHRNILYLGHLPG   83 (198)
T ss_pred             EEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCccEEEECCEEcccchHHhhhheEEeccCcc
Confidence            4555555566788999999999999999999999999999999987 46689999999875321   11122222211  


Q ss_pred             ------HHHHHHH---H-----HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhc
Q 024315          156 ------RVENIRR---I-----GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEAR  216 (269)
Q Consensus       156 ------~~~~~~~---l-----~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R  216 (269)
                            ..+++..   .     ......+...++..    .+...++++++| ..+++++.++++  +++|+|+..++..
T Consensus        84 ~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l--lllDEPt~~LD~~  161 (198)
T TIGR01189        84 LKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPL--WILDEPTTALDKA  161 (198)
T ss_pred             cccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCE--EEEeCCCcCCCHH
Confidence                  1111111   0     01222333334422    123345666666 689999999999  9999999999988


Q ss_pred             ChhhHHHHHhc
Q 024315          217 DPKGLYKLARE  227 (269)
Q Consensus       217 ~~k~l~~~~r~  227 (269)
                      ..+.+.+.+++
T Consensus       162 ~~~~l~~~l~~  172 (198)
T TIGR01189       162 GVALLAGLLRA  172 (198)
T ss_pred             HHHHHHHHHHH
Confidence            87777666553

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.49  E-value=1.8e-13  Score=119.37  Aligned_cols=144  Identities=20%  Similarity=0.197  Sum_probs=95.8

Q ss_pred             cceEEeeCc----eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-------c-cc
Q 024315           80 TNILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------L-NR  147 (269)
Q Consensus        80 ~~~~~~~~~----v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-------l-~~  147 (269)
                      .++.+.+..    ....+.+++.+++|++++|+|+||||||||+++|+|.+ .+.+|.+.++|.++...       . +.
T Consensus        10 ~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~~~   88 (228)
T PRK10584         10 HHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLD-DGSSGEVSLVGQPLHQMDEEARAKLRAK   88 (228)
T ss_pred             eeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC-CCCCeeEEECCEEcccCCHHHHHHHHhh
Confidence            345555432    24678889999999999999999999999999999987 46689999999765320       0 11


Q ss_pred             CCCCChhhH--------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCcc
Q 024315          148 DLSFKAEDR--------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFI  202 (269)
Q Consensus       148 ~~g~~~~~~--------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~  202 (269)
                      .++|.+++.        .+++..            ..++...+...++..    .+...++++++| ..+++++.++++ 
T Consensus        89 ~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~l-  167 (228)
T PRK10584         89 HVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDV-  167 (228)
T ss_pred             eEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCE-
Confidence            222222110        111100            011222333444422    233456666666 689999999999 


Q ss_pred             EEEEeCChhHHHhcChhhHHHHHh
Q 024315          203 EVFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       203 ~i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                       +++|+|+..++....+.+.+.++
T Consensus       168 -lllDEPt~~LD~~~~~~l~~~l~  190 (228)
T PRK10584        168 -LFADEPTGNLDRQTGDKIADLLF  190 (228)
T ss_pred             -EEEeCCCCCCCHHHHHHHHHHHH
Confidence             99999999999988887776654

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.49  E-value=2.4e-13  Score=120.55  Aligned_cols=144  Identities=16%  Similarity=0.211  Sum_probs=98.0

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-----cccCCCCChh
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAE  154 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-----l~~~~g~~~~  154 (269)
                      .++.+.+......+.+++.+.+|++++|+|+||||||||+++|+|.+ ++.+|.|.++|.++...     .+..++|.++
T Consensus         9 ~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q   87 (255)
T PRK11300          9 SGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFY-KPTGGTILLRGQHIEGLPGHQIARMGVVRTFQ   87 (255)
T ss_pred             eeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCc-CCCcceEEECCEECCCCCHHHHHhcCeEEecc
Confidence            46666666667788999999999999999999999999999999988 46689999999876420     0111222221


Q ss_pred             h--------HHHHHHH---------------------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHH
Q 024315          155 D--------RVENIRR---------------------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRS  194 (269)
Q Consensus       155 ~--------~~~~~~~---------------------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~  194 (269)
                      +        ..+++..                           .......+...++..    .+...++++++| ..+++
T Consensus        88 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~a  167 (255)
T PRK11300         88 HVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARC  167 (255)
T ss_pred             CcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHH
Confidence            1        1111110                           001122233334422    123346666666 68999


Q ss_pred             hCCCCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315          195 MLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       195 ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      ++.++++  +++|+|+..++...++.+.+.+.
T Consensus       168 l~~~p~l--lllDEPt~~LD~~~~~~l~~~L~  197 (255)
T PRK11300        168 MVTQPEI--LMLDEPAAGLNPKETKELDELIA  197 (255)
T ss_pred             HhcCCCE--EEEcCCccCCCHHHHHHHHHHHH
Confidence            9999999  99999999999998888776654

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.49  E-value=1.2e-13  Score=124.50  Aligned_cols=144  Identities=18%  Similarity=0.209  Sum_probs=99.3

Q ss_pred             cceEEeeCc--eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCCh
Q 024315           80 TNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKA  153 (269)
Q Consensus        80 ~~~~~~~~~--v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~  153 (269)
                      .++++.+..  ....+++++++++|++++|+|+||||||||+++|+|.+ .+.+|.|.++|.++..    .++..++|..
T Consensus         9 ~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~-~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~   87 (279)
T PRK13635          9 EHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLL-LPEAGTITVGGMVLSEETVWDVRRQVGMVF   87 (279)
T ss_pred             EEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCCcEEEECCEECCcCcHHHHhhheEEEE
Confidence            455555532  34678889999999999999999999999999999988 4678999999988642    1222334443


Q ss_pred             hhH---------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEe
Q 024315          154 EDR---------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMD  207 (269)
Q Consensus       154 ~~~---------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld  207 (269)
                      ++.         .+++..            ...+...+...++..    .....++++++| ..+++++.++++  +++|
T Consensus        88 q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~l--llLD  165 (279)
T PRK13635         88 QNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDI--IILD  165 (279)
T ss_pred             eCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCE--EEEe
Confidence            322         111110            001222333334422    233456666666 699999999999  9999


Q ss_pred             CChhHHHhcChhhHHHHHh
Q 024315          208 VPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       208 ~p~~~l~~R~~k~l~~~~r  226 (269)
                      +|+..++....+.+.+.++
T Consensus       166 EPt~gLD~~~~~~l~~~l~  184 (279)
T PRK13635        166 EATSMLDPRGRREVLETVR  184 (279)
T ss_pred             CCcccCCHHHHHHHHHHHH
Confidence            9999999998888776655

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.49  E-value=1.3e-13  Score=123.77  Aligned_cols=145  Identities=15%  Similarity=0.191  Sum_probs=99.0

Q ss_pred             cceEEeeC--ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCCh
Q 024315           80 TNILWHKN--SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKA  153 (269)
Q Consensus        80 ~~~~~~~~--~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~  153 (269)
                      .++++.+.  .....+++++.+++|++++|+|+||||||||+++|++.+ ++.+|.|.++|.++..    .++..++|.+
T Consensus        11 ~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~   89 (271)
T PRK13632         11 ENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLL-KPQSGEIKIDGITISKENLKEIRKKIGIIF   89 (271)
T ss_pred             EeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEecCcCCHHHHhcceEEEE
Confidence            35555542  344678889999999999999999999999999999988 4678999999987642    2233445544


Q ss_pred             hhHH---------HHHHH-----------H-HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEe
Q 024315          154 EDRV---------ENIRR-----------I-GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMD  207 (269)
Q Consensus       154 ~~~~---------~~~~~-----------l-~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld  207 (269)
                      ++..         +++..           . ..+..++...++..    .+...++++++| ..+++++.++++  +++|
T Consensus        90 q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l--llLD  167 (271)
T PRK13632         90 QNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEI--IIFD  167 (271)
T ss_pred             eCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCE--EEEe
Confidence            4321         11110           0 01122233334422    233456666666 689999999999  9999


Q ss_pred             CChhHHHhcChhhHHHHHhc
Q 024315          208 VPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       208 ~p~~~l~~R~~k~l~~~~r~  227 (269)
                      +|+..++....+.+++.+++
T Consensus       168 EP~~gLD~~~~~~l~~~l~~  187 (271)
T PRK13632        168 ESTSMLDPKGKREIKKIMVD  187 (271)
T ss_pred             CCcccCCHHHHHHHHHHHHH
Confidence            99999999988887766553

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.49  E-value=1.5e-13  Score=122.20  Aligned_cols=144  Identities=19%  Similarity=0.228  Sum_probs=99.1

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----------------
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----------------  143 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----------------  143 (269)
                      .++.+.+......+.+++.+++|++++|+|+||||||||+++|++.++ +.+|.+.++|.++..                
T Consensus         9 ~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~   87 (257)
T PRK10619          9 IDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK-PSEGSIVVNGQTINLVRDKDGQLKVADKNQL   87 (257)
T ss_pred             eeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEEcccccccccccccccchHH
Confidence            456666656667888999999999999999999999999999999884 668999999976531                


Q ss_pred             -ccccCCCCChhh--------HHHHHHH-------------HHHHHHHHHhCCcce-----eeccCChHHHHH-HHHHHh
Q 024315          144 -GLNRDLSFKAED--------RVENIRR-------------IGEVAKLFADAGVIC-----IACLISPYRKDR-DACRSM  195 (269)
Q Consensus       144 -~l~~~~g~~~~~--------~~~~~~~-------------l~~~a~~~~~~g~~~-----iv~~~~~~~~~r-~~ar~l  195 (269)
                       ..+..++|.+++        -.+++..             -.+....+...++..     .....++++++| ..++++
T Consensus        88 ~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral  167 (257)
T PRK10619         88 RLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARAL  167 (257)
T ss_pred             HHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence             112223332211        1111110             011223344444422     123456666666 689999


Q ss_pred             CCCCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315          196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       196 l~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      +.++++  +++|+|+..++....+.+.+.++
T Consensus       168 ~~~p~l--lllDEPt~~LD~~~~~~l~~~l~  196 (257)
T PRK10619        168 AMEPEV--LLFDEPTSALDPELVGEVLRIMQ  196 (257)
T ss_pred             hcCCCE--EEEeCCcccCCHHHHHHHHHHHH
Confidence            999999  99999999999998888776544

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.49  E-value=9.7e-14  Score=125.40  Aligned_cols=144  Identities=19%  Similarity=0.191  Sum_probs=99.5

Q ss_pred             cceEEeeC-ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc------ccccCCCCC
Q 024315           80 TNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH------GLNRDLSFK  152 (269)
Q Consensus        80 ~~~~~~~~-~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~------~l~~~~g~~  152 (269)
                      .++++.+. .....+++++.+++|++++|+|+||||||||+++|++.+ ++.+|.+.++|.++..      .++..++|.
T Consensus         9 ~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~-~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v   87 (283)
T PRK13636          9 EELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGIL-KPSSGRILFDGKPIDYSRKGLMKLRESVGMV   87 (283)
T ss_pred             EeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCccEEEECCEECCCCcchHHHHHhhEEEE
Confidence            46666664 355778899999999999999999999999999999988 4678999999987631      122334443


Q ss_pred             hhhH---------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEE
Q 024315          153 AEDR---------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFM  206 (269)
Q Consensus       153 ~~~~---------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~l  206 (269)
                      +++.         .+++..            ...+...+...++..    .+...++++++| ..+++++.++++  +++
T Consensus        88 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~l--Lil  165 (283)
T PRK13636         88 FQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKV--LVL  165 (283)
T ss_pred             ecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCE--EEE
Confidence            3321         111110            011222333444422    234456666666 699999999999  999


Q ss_pred             eCChhHHHhcChhhHHHHHh
Q 024315          207 DVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       207 d~p~~~l~~R~~k~l~~~~r  226 (269)
                      |+|+..++......+.+.++
T Consensus       166 DEPt~gLD~~~~~~l~~~l~  185 (283)
T PRK13636        166 DEPTAGLDPMGVSEIMKLLV  185 (283)
T ss_pred             eCCccCCCHHHHHHHHHHHH
Confidence            99999999988877665543

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.49  E-value=6.4e-14  Score=138.15  Aligned_cols=134  Identities=19%  Similarity=0.261  Sum_probs=94.4

Q ss_pred             eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhH-------HHH
Q 024315           91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDR-------VEN  159 (269)
Q Consensus        91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~-------~~~  159 (269)
                      ..++.++++++|+.++|+|+||||||||++.|+|.+ ++.+|.|.++|.+++.    .++..+++.+|+.       +++
T Consensus       355 il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~-~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~N  433 (574)
T PRK11160        355 VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAW-DPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDN  433 (574)
T ss_pred             ceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHH
Confidence            456678999999999999999999999999999988 5779999999988763    2333344444332       122


Q ss_pred             HHHH------HHHHHHHHhCCc----------ce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcCh
Q 024315          160 IRRI------GEVAKLFADAGV----------IC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDP  218 (269)
Q Consensus       160 ~~~l------~~~a~~~~~~g~----------~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~  218 (269)
                      +..-      .++...+...++          ..    -....++++++| ..+|+++.++++  +.+|||++.+|....
T Consensus       434 i~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~i--lilDE~ts~lD~~t~  511 (574)
T PRK11160        434 LLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPL--LLLDEPTEGLDAETE  511 (574)
T ss_pred             hhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCE--EEEeCCcccCCHHHH
Confidence            1100      011112222222          11    123357777777 699999999999  999999999999998


Q ss_pred             hhHHHHHhc
Q 024315          219 KGLYKLARE  227 (269)
Q Consensus       219 k~l~~~~r~  227 (269)
                      +.+.+.+++
T Consensus       512 ~~i~~~l~~  520 (574)
T PRK11160        512 RQILELLAE  520 (574)
T ss_pred             HHHHHHHHH
Confidence            888766654

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.49  E-value=2e-13  Score=113.96  Aligned_cols=121  Identities=23%  Similarity=0.215  Sum_probs=85.7

Q ss_pred             eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHHHHHHHHHHH
Q 024315           90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKL  169 (269)
Q Consensus        90 ~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~l~~~a~~  169 (269)
                      ...+..++++++|++++|+|+||||||||++.|++.+ .+.+|.+.+++...       ++|.+++..-.-..+.+... 
T Consensus        15 ~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~~~~~-------i~~~~q~~~~~~~tv~~nl~-   85 (166)
T cd03223          15 VLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLW-PWGSGRIGMPEGED-------LLFLPQRPYLPLGTLREQLI-   85 (166)
T ss_pred             eeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCCce-------EEEECCCCccccccHHHHhh-
Confidence            4567889999999999999999999999999999987 46689999987421       23333322100000111100 


Q ss_pred             HHhCCcceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          170 FADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       170 ~~~~g~~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                        . .   .....++++++| ..+++++.++++  +++|||+..++....+.+.+.+++
T Consensus        86 --~-~---~~~~LS~G~~~rv~laral~~~p~~--lllDEPt~~LD~~~~~~l~~~l~~  136 (166)
T cd03223          86 --Y-P---WDDVLSGGEQQRLAFARLLLHKPKF--VFLDEATSALDEESEDRLYQLLKE  136 (166)
T ss_pred             --c-c---CCCCCCHHHHHHHHHHHHHHcCCCE--EEEECCccccCHHHHHHHHHHHHH
Confidence              0 0   123455666666 699999999999  999999999999888888777664

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.49  E-value=2e-13  Score=121.08  Aligned_cols=146  Identities=20%  Similarity=0.172  Sum_probs=98.2

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc----CCccEEEECCeecCc------ccccCC
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH------GLNRDL  149 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~----~~~g~i~l~g~~~~~------~l~~~~  149 (269)
                      .++.+.+......+++++.+.+|++++|+|+||||||||+++|+|.+.+    +.+|.|.++|.++..      .++..+
T Consensus         8 ~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i   87 (253)
T PRK14267          8 VNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREV   87 (253)
T ss_pred             EeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhce
Confidence            4566666555678899999999999999999999999999999998854    248999999987631      112223


Q ss_pred             CCChhhH--------HHHHHH-------------H-HHHHHHHHhCCcc--------eeeccCChHHHHH-HHHHHhCCC
Q 024315          150 SFKAEDR--------VENIRR-------------I-GEVAKLFADAGVI--------CIACLISPYRKDR-DACRSMLPE  198 (269)
Q Consensus       150 g~~~~~~--------~~~~~~-------------l-~~~a~~~~~~g~~--------~iv~~~~~~~~~r-~~ar~ll~~  198 (269)
                      +|.+++.        .+++..             . ..+...+...++.        ..+...++++++| ..+++++.+
T Consensus        88 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~  167 (253)
T PRK14267         88 GMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMK  167 (253)
T ss_pred             eEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcC
Confidence            3322211        111110             0 0112223333331        1233456666666 689999999


Q ss_pred             CCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          199 GDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       199 ~~~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      +++  +++|+|+..++....+.+++.+++
T Consensus       168 p~l--lllDEP~~~LD~~~~~~l~~~l~~  194 (253)
T PRK14267        168 PKI--LLMDEPTANIDPVGTAKIEELLFE  194 (253)
T ss_pred             CCE--EEEcCCCccCCHHHHHHHHHHHHH
Confidence            999  999999999999888887766554

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.48  E-value=2.3e-13  Score=121.68  Aligned_cols=144  Identities=17%  Similarity=0.165  Sum_probs=96.8

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhh
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAED  155 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~  155 (269)
                      .++.+.+......+.++|.+.+|++++|+|+||||||||+++|+|.+ ++.+|.|.++|.++..    .++..++|.+++
T Consensus        15 ~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~   93 (265)
T PRK10575         15 RNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQ-PPSEGEILLDAQPLESWSSKAFARKVAYLPQQ   93 (265)
T ss_pred             eeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CCCCCEEEECCEehhhCCHHHHhhheEEeccC
Confidence            45666665556788899999999999999999999999999999987 4668999999977531    111112222111


Q ss_pred             --------HHHHHHH----------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEE
Q 024315          156 --------RVENIRR----------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFM  206 (269)
Q Consensus       156 --------~~~~~~~----------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~l  206 (269)
                              ..+++..                ...+...+...++..    .+...++++++| ..+++++.++++  +++
T Consensus        94 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l--llL  171 (265)
T PRK10575         94 LPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRC--LLL  171 (265)
T ss_pred             CCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCE--EEE
Confidence                    1111110                011222333334322    233456666666 689999999999  999


Q ss_pred             eCChhHHHhcChhhHHHHHh
Q 024315          207 DVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       207 d~p~~~l~~R~~k~l~~~~r  226 (269)
                      |+|+..++....+.+++.++
T Consensus       172 DEPt~~LD~~~~~~~~~~l~  191 (265)
T PRK10575        172 DEPTSALDIAHQVDVLALVH  191 (265)
T ss_pred             cCCcccCCHHHHHHHHHHHH
Confidence            99999999998877665554

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.48  E-value=2e-13  Score=122.22  Aligned_cols=146  Identities=18%  Similarity=0.163  Sum_probs=98.5

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc----CCccEEEECCeecCc------ccccCC
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH------GLNRDL  149 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~----~~~g~i~l~g~~~~~------~l~~~~  149 (269)
                      .++.+.+......+++++++.+|++++|+|+||||||||+++|+|.+.+    +.+|.|.++|.++..      .++..+
T Consensus        24 ~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i  103 (267)
T PRK14237         24 KDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHI  103 (267)
T ss_pred             eeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcce
Confidence            4566665556677889999999999999999999999999999998853    468999999987631      112233


Q ss_pred             CCChhh-------HHHHHHH------------H-HHHHHHHHhCCcc--------eeeccCChHHHHH-HHHHHhCCCCC
Q 024315          150 SFKAED-------RVENIRR------------I-GEVAKLFADAGVI--------CIACLISPYRKDR-DACRSMLPEGD  200 (269)
Q Consensus       150 g~~~~~-------~~~~~~~------------l-~~~a~~~~~~g~~--------~iv~~~~~~~~~r-~~ar~ll~~~~  200 (269)
                      +|.+++       ..+++..            . ..+...+...++.        ..+...++++++| ..+++++.+++
T Consensus       104 ~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~  183 (267)
T PRK14237        104 GMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPD  183 (267)
T ss_pred             EEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence            333332       1111111            0 0111222233321        1123345666666 68999999999


Q ss_pred             ccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          201 FIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       201 ~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      +  +++|+|+..++....+.+.+.+++
T Consensus       184 l--llLDEPt~~LD~~~~~~l~~~l~~  208 (267)
T PRK14237        184 I--LLMDEPASALDPISTMQLEETMFE  208 (267)
T ss_pred             E--EEEeCCcccCCHHHHHHHHHHHHH
Confidence            9  999999999999988887766554

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.48  E-value=1.4e-13  Score=124.19  Aligned_cols=144  Identities=19%  Similarity=0.229  Sum_probs=99.3

Q ss_pred             cceEEeeCc------eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-----ccccC
Q 024315           80 TNILWHKNS------VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----GLNRD  148 (269)
Q Consensus        80 ~~~~~~~~~------v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-----~l~~~  148 (269)
                      .++.+.+..      ....+++++++.+|++++|+|+||||||||+++|+|.+. +.+|.|.++|.++..     .+++.
T Consensus         8 ~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~G~i~i~g~~i~~~~~~~~~~~~   86 (280)
T PRK13633          8 KNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI-PSEGKVYVDGLDTSDEENLWDIRNK   86 (280)
T ss_pred             eeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEeccccccHHHHhhh
Confidence            455555532      347788999999999999999999999999999999884 678999999987642     12333


Q ss_pred             CCCChhhHH---------HHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCcc
Q 024315          149 LSFKAEDRV---------ENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFI  202 (269)
Q Consensus       149 ~g~~~~~~~---------~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~  202 (269)
                      ++|.+++..         +.+..            ...+...+...++..    .+..+++++++| ..+++++.++++ 
T Consensus        87 i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~l-  165 (280)
T PRK13633         87 AGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPEC-  165 (280)
T ss_pred             eEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCE-
Confidence            444443321         11100            011122333334422    233456666666 689999999999 


Q ss_pred             EEEEeCChhHHHhcChhhHHHHHh
Q 024315          203 EVFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       203 ~i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                       +++|+|+..++....+.+.+.++
T Consensus       166 -lllDEPt~gLD~~~~~~l~~~l~  188 (280)
T PRK13633        166 -IIFDEPTAMLDPSGRREVVNTIK  188 (280)
T ss_pred             -EEEeCCcccCCHHHHHHHHHHHH
Confidence             99999999999999888776654

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.48  E-value=2.9e-13  Score=121.15  Aligned_cols=146  Identities=18%  Similarity=0.215  Sum_probs=97.2

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhc--c--CCccEEEECCeecCc------ccccCC
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH--W--RGKLTYILDGDNCRH------GLNRDL  149 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~--~--~~~g~i~l~g~~~~~------~l~~~~  149 (269)
                      .++.+.+......+++++.+++|++++|+|+||||||||+++|+|.++  +  +.+|.+.++|.++..      ..+..+
T Consensus        25 ~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i  104 (268)
T PRK14248         25 KDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREI  104 (268)
T ss_pred             EEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccE
Confidence            455665555556788899999999999999999999999999999763  1  468999999987642      112233


Q ss_pred             CCChhh-------HHHHHHH------------HHH-HHHHHHhCCcc--------eeeccCChHHHHH-HHHHHhCCCCC
Q 024315          150 SFKAED-------RVENIRR------------IGE-VAKLFADAGVI--------CIACLISPYRKDR-DACRSMLPEGD  200 (269)
Q Consensus       150 g~~~~~-------~~~~~~~------------l~~-~a~~~~~~g~~--------~iv~~~~~~~~~r-~~ar~ll~~~~  200 (269)
                      +|.+++       ..+++..            ..+ ....+...++.        ..+...++++++| ..+++++.+++
T Consensus       105 ~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~  184 (268)
T PRK14248        105 GMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPA  184 (268)
T ss_pred             EEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCC
Confidence            333222       1111110            000 11122222321        1233456666666 68999999999


Q ss_pred             ccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          201 FIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       201 ~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      +  +++|+|+..++....+.+++.+++
T Consensus       185 l--llLDEPt~~LD~~~~~~l~~~l~~  209 (268)
T PRK14248        185 V--LLLDEPASALDPISNAKIEELITE  209 (268)
T ss_pred             E--EEEcCCCcccCHHHHHHHHHHHHH
Confidence            9  999999999999988887766553

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.48  E-value=1.1e-13  Score=117.60  Aligned_cols=147  Identities=16%  Similarity=0.215  Sum_probs=100.0

Q ss_pred             EEeeCcee-eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc---ccccCCCCChhhH--
Q 024315           83 LWHKNSVD-KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH---GLNRDLSFKAEDR--  156 (269)
Q Consensus        83 ~~~~~~v~-~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~---~l~~~~g~~~~~~--  156 (269)
                      +.++++++ +.++++|....|++++|.|+|||||||+++.|+.+|. |.+|.+.++|-+..+   ..++.+|....+.  
T Consensus         8 ~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~-P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~gl   86 (245)
T COG4555           8 TKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI-PDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGL   86 (245)
T ss_pred             hhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc-CCCceEEEeecccccChHHHhhhcceecCCcCh
Confidence            33444444 7789999999999999999999999999999999995 679999999987653   2233333222111  


Q ss_pred             ------HHHHHHHH------------HHHHHHHhCCcce-----eeccCChHHHHHHHHHHhCCCCCccEEEEeCChhHH
Q 024315          157 ------VENIRRIG------------EVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVC  213 (269)
Q Consensus       157 ------~~~~~~l~------------~~a~~~~~~g~~~-----iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l  213 (269)
                            ++++..++            ..+.+....++..     +..++.++++.-.++|+++.+|.+  +.+|+|...+
T Consensus        87 Y~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i--~vlDEP~sGL  164 (245)
T COG4555          87 YARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSI--LVLDEPTSGL  164 (245)
T ss_pred             hhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCe--EEEcCCCCCc
Confidence                  12222211            1222222333322     234556666666899999999999  8999999999


Q ss_pred             HhcChhhHHHHHhcCcccc
Q 024315          214 EARDPKGLYKLAREGKVKG  232 (269)
Q Consensus       214 ~~R~~k~l~~~~r~g~~~~  232 (269)
                      +-+..+.+.+-+.+-+-++
T Consensus       165 Di~~~r~~~dfi~q~k~eg  183 (245)
T COG4555         165 DIRTRRKFHDFIKQLKNEG  183 (245)
T ss_pred             cHHHHHHHHHHHHHhhcCC
Confidence            9988877766555433333

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.48  E-value=1.7e-13  Score=126.38  Aligned_cols=135  Identities=19%  Similarity=0.250  Sum_probs=95.4

Q ss_pred             eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-------ccccCCCCChhhHH----
Q 024315           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-------GLNRDLSFKAEDRV----  157 (269)
Q Consensus        89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-------~l~~~~g~~~~~~~----  157 (269)
                      +.+.++++|.+.+|++++|+|+||||||||+++|++++. +.+|.|.++|.++..       .++..++|..|+..    
T Consensus        28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~-p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~  106 (327)
T PRK11308         28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET-PTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLN  106 (327)
T ss_pred             eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC-CCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcC
Confidence            567889999999999999999999999999999999884 568999999988642       12233444433310    


Q ss_pred             ------HHHH-------------HHHHHHHHHHhCCcc-----eeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhH
Q 024315          158 ------ENIR-------------RIGEVAKLFADAGVI-----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV  212 (269)
Q Consensus       158 ------~~~~-------------~l~~~a~~~~~~g~~-----~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~  212 (269)
                            +.+.             ....+...+...++.     ..+..+++++++| .++++++.++++  +++|||+..
T Consensus       107 p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~l--LilDEPts~  184 (327)
T PRK11308        107 PRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDV--VVADEPVSA  184 (327)
T ss_pred             CccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCE--EEEECCCcc
Confidence                  0010             011223344444442     1234557777777 699999999999  999999999


Q ss_pred             HHhcChhhHHHHHh
Q 024315          213 CEARDPKGLYKLAR  226 (269)
Q Consensus       213 l~~R~~k~l~~~~r  226 (269)
                      ++....+.+.+.++
T Consensus       185 LD~~~~~~i~~lL~  198 (327)
T PRK11308        185 LDVSVQAQVLNLMM  198 (327)
T ss_pred             CCHHHHHHHHHHHH
Confidence            99888777655443

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.48  E-value=2.3e-13  Score=121.14  Aligned_cols=146  Identities=17%  Similarity=0.203  Sum_probs=98.0

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc----CCccEEEECCeecCc------ccccCC
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH------GLNRDL  149 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~----~~~g~i~l~g~~~~~------~l~~~~  149 (269)
                      .++.+.+......+.+++++.+|++++|+|+||||||||+++|+|.+++    +.+|.|.++|.++..      .++..+
T Consensus        16 ~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i   95 (258)
T PRK14268         16 ENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNV   95 (258)
T ss_pred             eeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhE
Confidence            4556655555567889999999999999999999999999999998753    368999999987631      112223


Q ss_pred             CCChhhH-------HHHHHHH------------HHHHHHHHhCCcc--------eeeccCChHHHHH-HHHHHhCCCCCc
Q 024315          150 SFKAEDR-------VENIRRI------------GEVAKLFADAGVI--------CIACLISPYRKDR-DACRSMLPEGDF  201 (269)
Q Consensus       150 g~~~~~~-------~~~~~~l------------~~~a~~~~~~g~~--------~iv~~~~~~~~~r-~~ar~ll~~~~~  201 (269)
                      +|.+++.       .+++...            ..+...+...++.        ..+...++++++| ..+++++.++++
T Consensus        96 ~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l  175 (258)
T PRK14268         96 GMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKI  175 (258)
T ss_pred             EEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence            3333221       1111100            0112223333321        1123456666666 699999999999


Q ss_pred             cEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          202 IEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       202 ~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                        +++|+|+..++......+++.+++
T Consensus       176 --lllDEPt~~LD~~~~~~l~~~l~~  199 (258)
T PRK14268        176 --ILFDEPTSALDPISTARIEDLIMN  199 (258)
T ss_pred             --EEEeCCCcccCHHHHHHHHHHHHH
Confidence              999999999999988887766553

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.48  E-value=2.1e-13  Score=121.35  Aligned_cols=146  Identities=21%  Similarity=0.203  Sum_probs=97.6

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc----CCccEEEECCeecCc------ccccCC
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH------GLNRDL  149 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~----~~~g~i~l~g~~~~~------~l~~~~  149 (269)
                      .++.+.+......+++++.+.+|++++|+|+||||||||++.|+|.+.+    +.+|.|.++|.++..      .++..+
T Consensus         8 ~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i   87 (258)
T PRK14241          8 KDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTI   87 (258)
T ss_pred             eeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcce
Confidence            4666666566678899999999999999999999999999999998853    258999999977621      112222


Q ss_pred             CCChhh--------HHHHHHH------------HH-HHHHHHHhCCc--------ceeeccCChHHHHH-HHHHHhCCCC
Q 024315          150 SFKAED--------RVENIRR------------IG-EVAKLFADAGV--------ICIACLISPYRKDR-DACRSMLPEG  199 (269)
Q Consensus       150 g~~~~~--------~~~~~~~------------l~-~~a~~~~~~g~--------~~iv~~~~~~~~~r-~~ar~ll~~~  199 (269)
                      +|..++        ..+++..            .. .....+...++        ...+...++++++| ..+++++.++
T Consensus        88 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p  167 (258)
T PRK14241         88 GMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEP  167 (258)
T ss_pred             EEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCC
Confidence            322221        0111110            00 11122323332        11233456666666 6899999999


Q ss_pred             CccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          200 DFIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       200 ~~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      ++  +++|+|+..++....+.+++.+++
T Consensus       168 ~l--lllDEPt~~LD~~~~~~l~~~l~~  193 (258)
T PRK14241        168 DV--LLMDEPCSALDPISTLAIEDLINE  193 (258)
T ss_pred             CE--EEEcCCCccCCHHHHHHHHHHHHH
Confidence            99  999999999998888777665543

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.48  E-value=9.3e-14  Score=135.52  Aligned_cols=134  Identities=19%  Similarity=0.216  Sum_probs=93.9

Q ss_pred             eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhH-------HHH
Q 024315           91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDR-------VEN  159 (269)
Q Consensus        91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~-------~~~  159 (269)
                      ..++.++++++|+.++|+|+||||||||++.|.|.+ ++.+|.|.++|.++.+    .+++.+++.+|+.       +++
T Consensus       337 il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~-~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~N  415 (529)
T TIGR02857       337 ALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFV-DPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAEN  415 (529)
T ss_pred             cccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHH
Confidence            456678999999999999999999999999999988 5778999999998753    2333344444331       122


Q ss_pred             HHHH------HHHHHHHHhC-----------Ccce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcC
Q 024315          160 IRRI------GEVAKLFADA-----------GVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD  217 (269)
Q Consensus       160 ~~~l------~~~a~~~~~~-----------g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~  217 (269)
                      +..-      .++.......           |+..    -....++++++| ..+|+++.++++  +.+|||++.++...
T Consensus       416 i~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~i--lilDE~ts~lD~~~  493 (529)
T TIGR02857       416 IRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPL--LLLDEPTAHLDAET  493 (529)
T ss_pred             HhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCE--EEEeCcccccCHHH
Confidence            1100      0111111111           2211    223457777777 799999999999  99999999999999


Q ss_pred             hhhHHHHHhc
Q 024315          218 PKGLYKLARE  227 (269)
Q Consensus       218 ~k~l~~~~r~  227 (269)
                      .+.+++.+++
T Consensus       494 ~~~i~~~l~~  503 (529)
T TIGR02857       494 EALVTEALRA  503 (529)
T ss_pred             HHHHHHHHHH
Confidence            8888777664

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.48  E-value=2.5e-13  Score=119.55  Aligned_cols=144  Identities=14%  Similarity=0.232  Sum_probs=96.1

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-----ccccCCCCChh
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----GLNRDLSFKAE  154 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-----~l~~~~g~~~~  154 (269)
                      .++.+.+......+++++++++|++++|+|+||||||||++.|++.+ .+.+|.+.++|.++..     ..+..++|.++
T Consensus         7 ~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q   85 (241)
T PRK10895          7 KNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIV-PRDAGNIIIDDEDISLLPLHARARRGIGYLPQ   85 (241)
T ss_pred             eCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEECCCCCHHHHHHhCeEEecc
Confidence            45666665566778899999999999999999999999999999988 4668999999977532     01122222222


Q ss_pred             hH--------HHHHHH-------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeC
Q 024315          155 DR--------VENIRR-------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDV  208 (269)
Q Consensus       155 ~~--------~~~~~~-------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~  208 (269)
                      +.        .+++..             .......+...++..    .....++++++| ..+++++.++++  +++|+
T Consensus        86 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l--lllDE  163 (241)
T PRK10895         86 EASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKF--ILLDE  163 (241)
T ss_pred             CCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCE--EEEcC
Confidence            11        111100             001122233333322    223456666666 689999999999  99999


Q ss_pred             ChhHHHhcChhhHHHHHh
Q 024315          209 PLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       209 p~~~l~~R~~k~l~~~~r  226 (269)
                      |+..++....+.+.+.++
T Consensus       164 Pt~~LD~~~~~~l~~~l~  181 (241)
T PRK10895        164 PFAGVDPISVIDIKRIIE  181 (241)
T ss_pred             CcccCCHHHHHHHHHHHH
Confidence            999999888877655443

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.48  E-value=6.8e-14  Score=141.03  Aligned_cols=134  Identities=22%  Similarity=0.219  Sum_probs=94.2

Q ss_pred             eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhH-------HHH
Q 024315           91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDR-------VEN  159 (269)
Q Consensus        91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~-------~~~  159 (269)
                      ..++.++++++|+.++|+|+||||||||++.|+|++ +|.+|.|.+||.++..    .+++.++|.+|+.       +++
T Consensus       489 iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~-~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eN  567 (708)
T TIGR01193       489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFF-QARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILEN  567 (708)
T ss_pred             ceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccC-CCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHH
Confidence            346779999999999999999999999999999988 5779999999988753    3344444444331       111


Q ss_pred             HH-------------HHHHHH---HHHH--hCCccee----eccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhc
Q 024315          160 IR-------------RIGEVA---KLFA--DAGVICI----ACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEAR  216 (269)
Q Consensus       160 ~~-------------~l~~~a---~~~~--~~g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R  216 (269)
                      +.             ...+.+   ....  ..|+...    ....+++++|| ..+|+++.++++  +++|||++.++..
T Consensus       568 i~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~i--liLDE~Ts~LD~~  645 (708)
T TIGR01193       568 LLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKV--LILDESTSNLDTI  645 (708)
T ss_pred             HhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCE--EEEeCccccCCHH
Confidence            11             101110   1111  1122222    23457777777 799999999999  9999999999999


Q ss_pred             ChhhHHHHHhc
Q 024315          217 DPKGLYKLARE  227 (269)
Q Consensus       217 ~~k~l~~~~r~  227 (269)
                      ..+.+++.++.
T Consensus       646 te~~i~~~L~~  656 (708)
T TIGR01193       646 TEKKIVNNLLN  656 (708)
T ss_pred             HHHHHHHHHHH
Confidence            98888777664

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.48  E-value=1.8e-13  Score=122.72  Aligned_cols=145  Identities=15%  Similarity=0.144  Sum_probs=97.6

Q ss_pred             cceEEeeCc--eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCCh
Q 024315           80 TNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKA  153 (269)
Q Consensus        80 ~~~~~~~~~--v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~  153 (269)
                      .++.+.+..  ....+++++.+.+|++++|+|+||||||||+++|++.+ .+.+|.|.++|.++..    .++..++|.+
T Consensus        11 ~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~   89 (269)
T PRK13648         11 KNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIE-KVKSGEIFYNNQAITDDNFEKLRKHIGIVF   89 (269)
T ss_pred             EEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEECCcCCHHHHHhheeEEE
Confidence            355555432  23567889999999999999999999999999999988 4668999999987632    1222334433


Q ss_pred             hhH---------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEe
Q 024315          154 EDR---------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMD  207 (269)
Q Consensus       154 ~~~---------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld  207 (269)
                      ++.         .+++..            ...+...+...++..    .....++++++| ..+++++.++++  +++|
T Consensus        90 q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l--llLD  167 (269)
T PRK13648         90 QNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSV--IILD  167 (269)
T ss_pred             eChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCE--EEEe
Confidence            321         011100            011222333344322    223346666666 699999999999  9999


Q ss_pred             CChhHHHhcChhhHHHHHhc
Q 024315          208 VPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       208 ~p~~~l~~R~~k~l~~~~r~  227 (269)
                      +|+..++....+.+.+.+++
T Consensus       168 EPt~~LD~~~~~~l~~~L~~  187 (269)
T PRK13648        168 EATSMLDPDARQNLLDLVRK  187 (269)
T ss_pred             CCcccCCHHHHHHHHHHHHH
Confidence            99999999998887766553

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.48  E-value=2e-13  Score=120.92  Aligned_cols=146  Identities=16%  Similarity=0.160  Sum_probs=98.0

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc----CCccEEEECCeecCc------ccccCC
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH------GLNRDL  149 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~----~~~g~i~l~g~~~~~------~l~~~~  149 (269)
                      .++.+.+......+..++.+.+|++++|+|+||||||||+++|+|.+.+    +.+|.|.++|.++..      ..+..+
T Consensus         8 ~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i   87 (251)
T PRK14251          8 KDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEV   87 (251)
T ss_pred             EeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccE
Confidence            4666666666677889999999999999999999999999999998852    358999999987631      112223


Q ss_pred             CCChhh-------HHHHHHH------------H-HHHHHHHHhCCcc--------eeeccCChHHHHH-HHHHHhCCCCC
Q 024315          150 SFKAED-------RVENIRR------------I-GEVAKLFADAGVI--------CIACLISPYRKDR-DACRSMLPEGD  200 (269)
Q Consensus       150 g~~~~~-------~~~~~~~------------l-~~~a~~~~~~g~~--------~iv~~~~~~~~~r-~~ar~ll~~~~  200 (269)
                      +|..++       ..+++..            . ......+...++.        ..+...++++++| ..+++++.+++
T Consensus        88 ~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~  167 (251)
T PRK14251         88 GMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPK  167 (251)
T ss_pred             EEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCC
Confidence            332221       1111110            0 0111223333331        1223346666666 68899999999


Q ss_pred             ccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          201 FIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       201 ~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      +  +++|+|+..++....+.+++.+++
T Consensus       168 l--lllDEP~~~LD~~~~~~l~~~l~~  192 (251)
T PRK14251        168 V--VLLDEPTSALDPISSSEIEETLME  192 (251)
T ss_pred             E--EEecCCCccCCHHHHHHHHHHHHH
Confidence            9  999999999999888877766553

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.48  E-value=2.7e-13  Score=121.30  Aligned_cols=135  Identities=21%  Similarity=0.215  Sum_probs=93.1

Q ss_pred             eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-------cccCCCCChhhH-----
Q 024315           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------LNRDLSFKAEDR-----  156 (269)
Q Consensus        89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-------l~~~~g~~~~~~-----  156 (269)
                      ....+.+++++++|++++|+|+||||||||+++|++.+ .+.+|.|.++|.++...       ++..++|.+++.     
T Consensus        24 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~  102 (265)
T TIGR02769        24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLE-KPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVN  102 (265)
T ss_pred             eEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcC
Confidence            55778899999999999999999999999999999987 46789999999876421       122233333321     


Q ss_pred             -----HHHH----H--------H-HHHHHHHHHhCCcc-e----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhH
Q 024315          157 -----VENI----R--------R-IGEVAKLFADAGVI-C----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV  212 (269)
Q Consensus       157 -----~~~~----~--------~-l~~~a~~~~~~g~~-~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~  212 (269)
                           .+++    .        . .......+...++. .    .+...++++++| ..+++++.++++  +++|||+..
T Consensus       103 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~i--llLDEPt~~  180 (265)
T TIGR02769       103 PRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKL--IVLDEAVSN  180 (265)
T ss_pred             CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCccc
Confidence                 0100    0        0 01122334444442 1    223446666666 689999999999  999999999


Q ss_pred             HHhcChhhHHHHHh
Q 024315          213 CEARDPKGLYKLAR  226 (269)
Q Consensus       213 l~~R~~k~l~~~~r  226 (269)
                      ++....+.+.+.++
T Consensus       181 LD~~~~~~l~~~l~  194 (265)
T TIGR02769       181 LDMVLQAVILELLR  194 (265)
T ss_pred             CCHHHHHHHHHHHH
Confidence            99988777665554

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.48  E-value=2.3e-13  Score=120.96  Aligned_cols=144  Identities=18%  Similarity=0.164  Sum_probs=96.9

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhh
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAED  155 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~  155 (269)
                      .++.+.+......+.+++.+.+|++++|+|+||||||||+++|+|.+ .+.+|.+.++|.++..    .++..++|.+++
T Consensus         6 ~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~   84 (255)
T PRK11231          6 ENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLL-TPQSGTVFLGDKPISMLSSRQLARRLALLPQH   84 (255)
T ss_pred             EeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCc-CCCCcEEEECCEEhHHCCHHHHhhheEEeccc
Confidence            45666666666788899999999999999999999999999999987 4668999999976531    111112222211


Q ss_pred             H--------HHHHHH----------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEE
Q 024315          156 R--------VENIRR----------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFM  206 (269)
Q Consensus       156 ~--------~~~~~~----------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~l  206 (269)
                      .        .+++..                .......+...++..    .....++++++| ..+++++.++++  +++
T Consensus        85 ~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l--lll  162 (255)
T PRK11231         85 HLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPV--VLL  162 (255)
T ss_pred             CCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCE--EEE
Confidence            0        011100                001122233333321    233446666666 699999999999  999


Q ss_pred             eCChhHHHhcChhhHHHHHh
Q 024315          207 DVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       207 d~p~~~l~~R~~k~l~~~~r  226 (269)
                      |+|+..++....+.+.+.++
T Consensus       163 DEP~~~LD~~~~~~l~~~l~  182 (255)
T PRK11231        163 DEPTTYLDINHQVELMRLMR  182 (255)
T ss_pred             cCCcccCCHHHHHHHHHHHH
Confidence            99999999998888776654

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.48  E-value=2.7e-13  Score=116.92  Aligned_cols=141  Identities=18%  Similarity=0.212  Sum_probs=93.3

Q ss_pred             ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc--cccCCCCChhh---
Q 024315           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--LNRDLSFKAED---  155 (269)
Q Consensus        81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~--l~~~~g~~~~~---  155 (269)
                      ++.+.+....  ..+++.+.+|++++|+|+||||||||++.|++.+ ++.+|.+.++|.++...  .+..++|.+++   
T Consensus         5 ~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~-~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~   81 (211)
T cd03298           5 KIRFSYGEQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFE-TPQSGRVLINGVDVTAAPPADRPVSMLFQENNL   81 (211)
T ss_pred             eEEEEeCCEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEEcCcCCHhHccEEEEeccccc
Confidence            4444444332  3789999999999999999999999999999988 46689999999876321  11111221111   


Q ss_pred             -----HHHHHH------------HHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHH
Q 024315          156 -----RVENIR------------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVC  213 (269)
Q Consensus       156 -----~~~~~~------------~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l  213 (269)
                           ..+++.            .-..+...+...++..    .+...++++++| ..+++++.++++  +++|||+..+
T Consensus        82 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~l--lllDEP~~~L  159 (211)
T cd03298          82 FAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPV--LLLDEPFAAL  159 (211)
T ss_pred             CCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCE--EEEcCCcccC
Confidence                 111110            0011223344444422    233456666666 689999999999  9999999999


Q ss_pred             HhcChhhHHHHHh
Q 024315          214 EARDPKGLYKLAR  226 (269)
Q Consensus       214 ~~R~~k~l~~~~r  226 (269)
                      +....+.+.+.++
T Consensus       160 D~~~~~~l~~~l~  172 (211)
T cd03298         160 DPALRAEMLDLVL  172 (211)
T ss_pred             CHHHHHHHHHHHH
Confidence            9998888776655

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.48  E-value=2.2e-13  Score=126.81  Aligned_cols=141  Identities=22%  Similarity=0.239  Sum_probs=95.6

Q ss_pred             ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--------ccccCCCCC
Q 024315           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--------GLNRDLSFK  152 (269)
Q Consensus        81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--------~l~~~~g~~  152 (269)
                      +++..+..+..  ++++.+.+|++++|+|+||||||||+++|+|.+ .+.+|.|.++|.++..        ..++.++|.
T Consensus         5 ~l~k~~~~~~~--~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~-~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v   81 (352)
T PRK11144          5 NFKQQLGDLCL--TVNLTLPAQGITAIFGRSGAGKTSLINAISGLT-RPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYV   81 (352)
T ss_pred             EEEEEeCCEEE--EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEccccccccccchhhCCEEEE
Confidence            34445544432  689999999999999999999999999999987 4668999999987642        112233333


Q ss_pred             hhhH--------HHHHHH------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHH
Q 024315          153 AEDR--------VENIRR------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVC  213 (269)
Q Consensus       153 ~~~~--------~~~~~~------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l  213 (269)
                      .++.        .+++..      ..++...+...++..    .+..+++++++| ..+++++.++++  +++|||+..+
T Consensus        82 ~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~l--lLLDEPts~L  159 (352)
T PRK11144         82 FQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPEL--LLMDEPLASL  159 (352)
T ss_pred             cCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCE--EEEcCCcccC
Confidence            3321        121110      012223344445432    234456777777 699999999999  9999999999


Q ss_pred             HhcChhhHHHHHh
Q 024315          214 EARDPKGLYKLAR  226 (269)
Q Consensus       214 ~~R~~k~l~~~~r  226 (269)
                      +...++.+.+.++
T Consensus       160 D~~~~~~l~~~L~  172 (352)
T PRK11144        160 DLPRKRELLPYLE  172 (352)
T ss_pred             CHHHHHHHHHHHH
Confidence            9988877665544

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.48  E-value=2.8e-13  Score=120.41  Aligned_cols=145  Identities=21%  Similarity=0.263  Sum_probs=97.8

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhh
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAED  155 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~  155 (269)
                      .++.+.+......+.+++.+++|++++|+|+||||||||+++|+|.++ +.+|.+.++|.++..    .++..++|.+++
T Consensus         5 ~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~   83 (256)
T TIGR03873         5 SRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR-PDAGTVDLAGVDLHGLSRRARARRVALVEQD   83 (256)
T ss_pred             EeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-CCCCEEEECCEEcccCCHHHHhhheEEeccc
Confidence            356666666667889999999999999999999999999999999884 668999999987642    111112222221


Q ss_pred             H--------HHHHH----------------HHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEE
Q 024315          156 R--------VENIR----------------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFM  206 (269)
Q Consensus       156 ~--------~~~~~----------------~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~l  206 (269)
                      .        .+++.                ....+...+...++..    .+...++++++| ..+++++.++++  +++
T Consensus        84 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l--lll  161 (256)
T TIGR03873        84 SDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKL--LLL  161 (256)
T ss_pred             CccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCE--EEE
Confidence            0        11110                0011222333334322    233456666666 689999999999  999


Q ss_pred             eCChhHHHhcChhhHHHHHhc
Q 024315          207 DVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       207 d~p~~~l~~R~~k~l~~~~r~  227 (269)
                      |+|+..++....+.+.+.+++
T Consensus       162 DEPt~~LD~~~~~~l~~~l~~  182 (256)
T TIGR03873       162 DEPTNHLDVRAQLETLALVRE  182 (256)
T ss_pred             cCccccCCHHHHHHHHHHHHH
Confidence            999999999888877665543

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.47  E-value=3.9e-13  Score=116.49  Aligned_cols=144  Identities=17%  Similarity=0.215  Sum_probs=95.6

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-cccCCCCChhh---
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-LNRDLSFKAED---  155 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-l~~~~g~~~~~---  155 (269)
                      .++.+.+......+.+++.+.+|++++|+|+||||||||++.|+|.+ .+.+|.+.++|.++... .+..++|..+.   
T Consensus        15 ~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~   93 (214)
T PRK13543         15 HALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLL-HVESGQIQIDGKTATRGDRSRFMAYLGHLPGL   93 (214)
T ss_pred             eeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCC-CCCCeeEEECCEEccchhhhhceEEeecCccc
Confidence            45555554455678889999999999999999999999999999987 56789999999876421 11112222111   


Q ss_pred             -----HHHHHHH--------H-HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhc
Q 024315          156 -----RVENIRR--------I-GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEAR  216 (269)
Q Consensus       156 -----~~~~~~~--------l-~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R  216 (269)
                           ..+++..        . ......+...++..    .+...++++++| ..++.++.++++  +++|+|+..++..
T Consensus        94 ~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l--lllDEPt~~LD~~  171 (214)
T PRK13543         94 KADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPL--WLLDEPYANLDLE  171 (214)
T ss_pred             ccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCcccCCHH
Confidence                 1111110        0 01112233333321    223445666666 689999999998  9999999999998


Q ss_pred             ChhhHHHHHh
Q 024315          217 DPKGLYKLAR  226 (269)
Q Consensus       217 ~~k~l~~~~r  226 (269)
                      ..+.+.+.++
T Consensus       172 ~~~~l~~~l~  181 (214)
T PRK13543        172 GITLVNRMIS  181 (214)
T ss_pred             HHHHHHHHHH
Confidence            8887766654

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.47  E-value=2e-13  Score=127.23  Aligned_cols=141  Identities=18%  Similarity=0.186  Sum_probs=95.8

Q ss_pred             ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--------ccccCCCCC
Q 024315           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--------GLNRDLSFK  152 (269)
Q Consensus        81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--------~l~~~~g~~  152 (269)
                      ++++.++.+..  ++++.+.+|++++|+|+||||||||+++|++.++ +.+|.|.++|.++..        ..+..++|.
T Consensus         4 ~l~~~~~~~~~--~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~-p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v   80 (354)
T TIGR02142         4 RFSKRLGDFSL--DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR-PDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV   80 (354)
T ss_pred             EEEEEECCEEE--EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECccCccccccchhhCCeEEE
Confidence            34555555443  7899999999999999999999999999999884 668999999987632        112223332


Q ss_pred             hhhH--------HHHHHH----------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCC
Q 024315          153 AEDR--------VENIRR----------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVP  209 (269)
Q Consensus       153 ~~~~--------~~~~~~----------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p  209 (269)
                      .++.        .+++..          ...+...+...++..    .+..+++++++| ..+++++.++++  +++|||
T Consensus        81 ~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~l--llLDEP  158 (354)
T TIGR02142        81 FQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRL--LLMDEP  158 (354)
T ss_pred             ecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEcCC
Confidence            2211        111110          011223344445432    233456777777 699999999999  999999


Q ss_pred             hhHHHhcChhhHHHHHh
Q 024315          210 LQVCEARDPKGLYKLAR  226 (269)
Q Consensus       210 ~~~l~~R~~k~l~~~~r  226 (269)
                      +..++...++.+++.++
T Consensus       159 ts~LD~~~~~~l~~~L~  175 (354)
T TIGR02142       159 LAALDDPRKYEILPYLE  175 (354)
T ss_pred             CcCCCHHHHHHHHHHHH
Confidence            99999998887766554

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.47  E-value=2.8e-13  Score=117.21  Aligned_cols=142  Identities=16%  Similarity=0.209  Sum_probs=93.9

Q ss_pred             ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--ccccCCCCChhh---
Q 024315           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--GLNRDLSFKAED---  155 (269)
Q Consensus        81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--~l~~~~g~~~~~---  155 (269)
                      ++++.+..  .....++.+++|++++|+|+||||||||+++|++.+ .+.+|.|.++|.++..  ..+..++|.+++   
T Consensus         5 ~l~~~~~~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~   81 (213)
T TIGR01277         5 KVRYEYEH--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFI-EPASGSIKVNDQSHTGLAPYQRPVSMLFQENNL   81 (213)
T ss_pred             eeeEEeCC--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEEcccCChhccceEEEeccCcc
Confidence            44444432  234688999999999999999999999999999988 4668999999987642  112222222221   


Q ss_pred             -----HHHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHH
Q 024315          156 -----RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVC  213 (269)
Q Consensus       156 -----~~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l  213 (269)
                           ..+++..            -..+...+...++..    .+...++++++| ..+++++.++++  +++|+|+..+
T Consensus        82 ~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l--lllDEPt~~L  159 (213)
T TIGR01277        82 FAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPI--LLLDEPFSAL  159 (213)
T ss_pred             CCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCE--EEEcCCCccC
Confidence                 1111110            011222334444422    233456666666 688999999998  9999999999


Q ss_pred             HhcChhhHHHHHhc
Q 024315          214 EARDPKGLYKLARE  227 (269)
Q Consensus       214 ~~R~~k~l~~~~r~  227 (269)
                      +....+.+++.+++
T Consensus       160 D~~~~~~~~~~l~~  173 (213)
T TIGR01277       160 DPLLREEMLALVKQ  173 (213)
T ss_pred             CHHHHHHHHHHHHH
Confidence            99988887766543

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.47  E-value=2.2e-13  Score=123.36  Aligned_cols=135  Identities=19%  Similarity=0.214  Sum_probs=94.4

Q ss_pred             eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--------ccccCCCCChhhH-----
Q 024315           90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--------GLNRDLSFKAEDR-----  156 (269)
Q Consensus        90 ~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--------~l~~~~g~~~~~~-----  156 (269)
                      ...+++++++++|++++|+|+||||||||+++|++.+ .+.+|.|.++|.++..        ..+..++|.+++.     
T Consensus        21 ~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~   99 (287)
T PRK13641         21 KGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALL-KPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLF   99 (287)
T ss_pred             cceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhc
Confidence            4678889999999999999999999999999999988 4678999999987632        1122334443321     


Q ss_pred             ----HHHHHH-----------H-HHHHHHHHhCCcc-e----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHH
Q 024315          157 ----VENIRR-----------I-GEVAKLFADAGVI-C----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCE  214 (269)
Q Consensus       157 ----~~~~~~-----------l-~~~a~~~~~~g~~-~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~  214 (269)
                          .+++..           . ..+...+...++. .    .+..+++++++| ..+++++.++++  +++|||+..++
T Consensus       100 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~l--LlLDEPt~gLD  177 (287)
T PRK13641        100 ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEI--LCLDEPAAGLD  177 (287)
T ss_pred             cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCE--EEEECCCCCCC
Confidence                111110           0 0122233444542 1    133456666666 689999999999  99999999999


Q ss_pred             hcChhhHHHHHhc
Q 024315          215 ARDPKGLYKLARE  227 (269)
Q Consensus       215 ~R~~k~l~~~~r~  227 (269)
                      ....+.+.+.+++
T Consensus       178 ~~~~~~l~~~l~~  190 (287)
T PRK13641        178 PEGRKEMMQLFKD  190 (287)
T ss_pred             HHHHHHHHHHHHH
Confidence            9888887766553

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.47  E-value=1.1e-13  Score=120.76  Aligned_cols=144  Identities=19%  Similarity=0.226  Sum_probs=93.8

Q ss_pred             ceEEeeCc-eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhh
Q 024315           81 NILWHKNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAED  155 (269)
Q Consensus        81 ~~~~~~~~-v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~  155 (269)
                      ++.+.+.. ....++.++++.+|++++|+|+||||||||+++|++.++ +.+|.+.++|.++..    .++..++|.+++
T Consensus         7 ~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~   85 (229)
T cd03254           7 NVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD-PQKGQILIDGIDIRDISRKSLRSMIGVVLQD   85 (229)
T ss_pred             EEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-CCCCEEEECCEeHHHcCHHHHhhhEEEecCC
Confidence            44554432 346778899999999999999999999999999999884 668999999977532    112223333332


Q ss_pred             HH-------HHHH---------HHHH------HHHHHHhC--Ccc----eeeccCChHHHHH-HHHHHhCCCCCccEEEE
Q 024315          156 RV-------ENIR---------RIGE------VAKLFADA--GVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFM  206 (269)
Q Consensus       156 ~~-------~~~~---------~l~~------~a~~~~~~--g~~----~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~l  206 (269)
                      ..       +.+.         .+..      ....+...  ++.    ..+...++++++| ..+++++.++++  +++
T Consensus        86 ~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~l--lll  163 (229)
T cd03254          86 TFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKI--LIL  163 (229)
T ss_pred             chhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCE--EEE
Confidence            11       0000         0000      00000000  111    1123456666666 699999999999  999


Q ss_pred             eCChhHHHhcChhhHHHHHhc
Q 024315          207 DVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       207 d~p~~~l~~R~~k~l~~~~r~  227 (269)
                      |+|+..++...++.+++.++.
T Consensus       164 DEP~~~LD~~~~~~l~~~l~~  184 (229)
T cd03254         164 DEATSNIDTETEKLIQEALEK  184 (229)
T ss_pred             eCccccCCHHHHHHHHHHHHH
Confidence            999999999988887766654

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.47  E-value=4.9e-13  Score=120.10  Aligned_cols=146  Identities=21%  Similarity=0.168  Sum_probs=96.9

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc----CCccEEEECCeecCc------ccccCC
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH------GLNRDL  149 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~----~~~g~i~l~g~~~~~------~l~~~~  149 (269)
                      .++.+.+........+++.+++|++++|+|+||||||||+++|+|.+..    +.+|.+.++|.++..      .++..+
T Consensus        29 ~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i  108 (272)
T PRK14236         29 RNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRV  108 (272)
T ss_pred             EEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccE
Confidence            4556555555567888999999999999999999999999999998753    368999999987642      112223


Q ss_pred             CCChhh-------HHHHHHHH-------------HHHHHHHHhCCcc--------eeeccCChHHHHH-HHHHHhCCCCC
Q 024315          150 SFKAED-------RVENIRRI-------------GEVAKLFADAGVI--------CIACLISPYRKDR-DACRSMLPEGD  200 (269)
Q Consensus       150 g~~~~~-------~~~~~~~l-------------~~~a~~~~~~g~~--------~iv~~~~~~~~~r-~~ar~ll~~~~  200 (269)
                      +|.+++       ..+++...             ..+...+...++.        ......++++++| ..+++++.+++
T Consensus       109 ~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~  188 (272)
T PRK14236        109 GMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPE  188 (272)
T ss_pred             EEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCC
Confidence            333221       11111100             0111222222321        1233456666666 68999999999


Q ss_pred             ccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          201 FIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       201 ~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      +  +++|+|+..++....+.+.+.+++
T Consensus       189 l--llLDEPt~gLD~~~~~~l~~~L~~  213 (272)
T PRK14236        189 V--LLLDEPTSALDPISTLKIEELITE  213 (272)
T ss_pred             E--EEEeCCcccCCHHHHHHHHHHHHH
Confidence            9  999999999999888777665543

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.47  E-value=1.1e-13  Score=139.76  Aligned_cols=129  Identities=22%  Similarity=0.242  Sum_probs=90.1

Q ss_pred             ccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhH-------HHHH
Q 024315           92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDR-------VENI  160 (269)
Q Consensus        92 ~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~-------~~~~  160 (269)
                      .++.++++++|+.++|+|+||||||||++.|.|.+ ++.+|.|.+||.++.+    .+++.+++.+|+.       ++++
T Consensus       497 L~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~-~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI  575 (711)
T TIGR00958       497 LKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLY-QPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENI  575 (711)
T ss_pred             ccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhcc-CCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHH
Confidence            45668999999999999999999999999999988 5779999999988753    2333334333321       1111


Q ss_pred             ------------HHHHHHH---HHHH--hCCccee----eccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcCh
Q 024315          161 ------------RRIGEVA---KLFA--DAGVICI----ACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDP  218 (269)
Q Consensus       161 ------------~~l~~~a---~~~~--~~g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~  218 (269)
                                  ....+.+   ....  ..|....    ....+++++|| ..+|+++.++++  +.+|||++.+|....
T Consensus       576 ~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~I--LILDEpTSaLD~~te  653 (711)
T TIGR00958       576 AYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRV--LILDEATSALDAECE  653 (711)
T ss_pred             hcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCE--EEEEccccccCHHHH
Confidence                        1111110   1111  1122221    23457788887 799999999999  999999999999887


Q ss_pred             hhHHH
Q 024315          219 KGLYK  223 (269)
Q Consensus       219 k~l~~  223 (269)
                      +.+++
T Consensus       654 ~~i~~  658 (711)
T TIGR00958       654 QLLQE  658 (711)
T ss_pred             HHHHH
Confidence            77776

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.47  E-value=2.8e-13  Score=120.61  Aligned_cols=146  Identities=19%  Similarity=0.213  Sum_probs=97.9

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc-C---CccEEEECCeecCc------ccccCC
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW-R---GKLTYILDGDNCRH------GLNRDL  149 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~-~---~~g~i~l~g~~~~~------~l~~~~  149 (269)
                      .++.+.+........+++++.+|++++|+|+||||||||++.|+|.+.+ +   .+|.+.++|.++..      .++..+
T Consensus        16 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i   95 (259)
T PRK14274         16 NGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNI   95 (259)
T ss_pred             eeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhce
Confidence            5666666555677889999999999999999999999999999998752 2   47999999987631      112223


Q ss_pred             CCChhh-------HHHHHH---H---------H-HHHHHHHHhCCcc--------eeeccCChHHHHH-HHHHHhCCCCC
Q 024315          150 SFKAED-------RVENIR---R---------I-GEVAKLFADAGVI--------CIACLISPYRKDR-DACRSMLPEGD  200 (269)
Q Consensus       150 g~~~~~-------~~~~~~---~---------l-~~~a~~~~~~g~~--------~iv~~~~~~~~~r-~~ar~ll~~~~  200 (269)
                      +|.+++       ..+++.   .         . ......+...++.        ......++++++| ..+++++.+++
T Consensus        96 ~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~  175 (259)
T PRK14274         96 GMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPD  175 (259)
T ss_pred             EEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence            333221       111110   0         0 0111223333331        1223346666666 68999999999


Q ss_pred             ccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          201 FIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       201 ~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      +  +++|+|+..++....+.+.+.+++
T Consensus       176 l--lllDEPt~~LD~~~~~~l~~~l~~  200 (259)
T PRK14274        176 V--LLMDEPTSALDPVSTRKIEELILK  200 (259)
T ss_pred             E--EEEcCCcccCCHHHHHHHHHHHHH
Confidence            8  999999999999888877766553

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.47  E-value=1.9e-13  Score=123.98  Aligned_cols=144  Identities=15%  Similarity=0.102  Sum_probs=98.5

Q ss_pred             cceEEeeCc-----eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--------ccc
Q 024315           80 TNILWHKNS-----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--------GLN  146 (269)
Q Consensus        80 ~~~~~~~~~-----v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--------~l~  146 (269)
                      .++.+.+..     ....+++++++++|++++|+|+||||||||+++|.+.+ .+.+|.|.++|.++..        ..+
T Consensus         6 ~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~~~~~~~~~~~~~   84 (290)
T PRK13634          6 QKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLL-QPTSGTVTIGERVITAGKKNKKLKPLR   84 (290)
T ss_pred             EEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCCcEEEECCEECccccccchHHHHH
Confidence            345555532     34678899999999999999999999999999999988 4678999999987631        112


Q ss_pred             cCCCCChhhH---------HHHHHH-----------H-HHHHHHHHhCCcc-e----eeccCChHHHHH-HHHHHhCCCC
Q 024315          147 RDLSFKAEDR---------VENIRR-----------I-GEVAKLFADAGVI-C----IACLISPYRKDR-DACRSMLPEG  199 (269)
Q Consensus       147 ~~~g~~~~~~---------~~~~~~-----------l-~~~a~~~~~~g~~-~----iv~~~~~~~~~r-~~ar~ll~~~  199 (269)
                      ..++|..|+.         .+++..           . ..+...+...++. .    .+..+++++++| .++++++.++
T Consensus        85 ~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P  164 (290)
T PRK13634         85 KKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEP  164 (290)
T ss_pred             hhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence            2344444321         111100           0 1122233444542 2    233456666666 6999999999


Q ss_pred             CccEEEEeCChhHHHhcChhhHHHHHh
Q 024315          200 DFIEVFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       200 ~~~~i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      ++  +++|+|+..++....+.+.+.++
T Consensus       165 ~l--lllDEPt~~LD~~~~~~l~~~L~  189 (290)
T PRK13634        165 EV--LVLDEPTAGLDPKGRKEMMEMFY  189 (290)
T ss_pred             CE--EEEECCcccCCHHHHHHHHHHHH
Confidence            99  99999999999988887665543

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.47  E-value=1.3e-13  Score=119.71  Aligned_cols=144  Identities=19%  Similarity=0.176  Sum_probs=94.0

Q ss_pred             ceEEeeC--ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChh
Q 024315           81 NILWHKN--SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAE  154 (269)
Q Consensus        81 ~~~~~~~--~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~  154 (269)
                      ++.+.+.  .....+++++.+++|++++|+|+||||||||+++|++.+ .+.+|.+.++|.++..    .++..++|.++
T Consensus         7 ~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q   85 (221)
T cd03244           7 NVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLV-ELSSGSILIDGVDISKIGLHDLRSRISIIPQ   85 (221)
T ss_pred             EEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCC-CCCCCEEEECCEEhHhCCHHHHhhhEEEECC
Confidence            4444443  234678889999999999999999999999999999987 4678999999987532    11222222222


Q ss_pred             hH-------HHHHHH-----HHHHHHHHHhCCcc---------------eeeccCChHHHHH-HHHHHhCCCCCccEEEE
Q 024315          155 DR-------VENIRR-----IGEVAKLFADAGVI---------------CIACLISPYRKDR-DACRSMLPEGDFIEVFM  206 (269)
Q Consensus       155 ~~-------~~~~~~-----l~~~a~~~~~~g~~---------------~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~l  206 (269)
                      +.       .+++..     ..+....+...++.               ......++++++| ..+++++.++++  +++
T Consensus        86 ~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l--lll  163 (221)
T cd03244          86 DPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI--LVL  163 (221)
T ss_pred             CCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE--EEE
Confidence            11       111100     00011111111111               1223445666666 699999999998  999


Q ss_pred             eCChhHHHhcChhhHHHHHhc
Q 024315          207 DVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       207 d~p~~~l~~R~~k~l~~~~r~  227 (269)
                      |+|+..++....+.+++.+++
T Consensus       164 DEP~~~LD~~~~~~l~~~l~~  184 (221)
T cd03244         164 DEATASVDPETDALIQKTIRE  184 (221)
T ss_pred             eCccccCCHHHHHHHHHHHHH
Confidence            999999999998888777664

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.47  E-value=4.3e-13  Score=118.67  Aligned_cols=146  Identities=19%  Similarity=0.207  Sum_probs=96.7

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc-C---CccEEEECCeecCc------ccccCC
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW-R---GKLTYILDGDNCRH------GLNRDL  149 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~-~---~~g~i~l~g~~~~~------~l~~~~  149 (269)
                      .++.+.+......+.+++++.+|++++|+|+||||||||+++|++.++. +   .+|.|.++|.++..      .++..+
T Consensus         7 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i   86 (250)
T PRK14240          7 KDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRV   86 (250)
T ss_pred             EEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccE
Confidence            4566665555677889999999999999999999999999999998642 2   47999999987642      112223


Q ss_pred             CCChhh-------HHHHHHH------------HH-HHHHHHHhCCcc--------eeeccCChHHHHH-HHHHHhCCCCC
Q 024315          150 SFKAED-------RVENIRR------------IG-EVAKLFADAGVI--------CIACLISPYRKDR-DACRSMLPEGD  200 (269)
Q Consensus       150 g~~~~~-------~~~~~~~------------l~-~~a~~~~~~g~~--------~iv~~~~~~~~~r-~~ar~ll~~~~  200 (269)
                      +|.+++       ..+++..            .. .....+...++.        ..+...++++++| ..+++++.+++
T Consensus        87 ~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~  166 (250)
T PRK14240         87 GMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPE  166 (250)
T ss_pred             EEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCC
Confidence            332221       1111110            00 111112222221        1123356666666 69999999999


Q ss_pred             ccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          201 FIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       201 ~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      +  +++|+|+..++....+.+.+.+++
T Consensus       167 l--lllDEP~~~LD~~~~~~l~~~l~~  191 (250)
T PRK14240        167 V--LLMDEPTSALDPISTLKIEELIQE  191 (250)
T ss_pred             E--EEEeCCCccCCHHHHHHHHHHHHH
Confidence            9  999999999999888877766553

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.47  E-value=1.9e-13  Score=123.08  Aligned_cols=134  Identities=16%  Similarity=0.114  Sum_probs=92.3

Q ss_pred             eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--------ccccCCCCChhhH-----
Q 024315           90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--------GLNRDLSFKAEDR-----  156 (269)
Q Consensus        90 ~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--------~l~~~~g~~~~~~-----  156 (269)
                      ...+++++++++|++++|+|+||||||||+++|++.+ .+.+|.|.++|.++..        .++..++|.+++.     
T Consensus        21 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~-~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~   99 (280)
T PRK13649         21 RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLH-VPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLF   99 (280)
T ss_pred             ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhc
Confidence            3567889999999999999999999999999999987 4678999999987632        1122334433321     


Q ss_pred             ----HHHHHH-----------HH-HHHHHHHhCCcce-----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHH
Q 024315          157 ----VENIRR-----------IG-EVAKLFADAGVIC-----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCE  214 (269)
Q Consensus       157 ----~~~~~~-----------l~-~~a~~~~~~g~~~-----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~  214 (269)
                          .+++..           .. .....+...++..     .+...++++++| ..+++++.++++  +++|+|+..++
T Consensus       100 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~l--llLDEPt~~LD  177 (280)
T PRK13649        100 EETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKI--LVLDEPTAGLD  177 (280)
T ss_pred             cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCE--EEEeCCcccCC
Confidence                111110           00 1112233334421     133456666666 688999999999  99999999999


Q ss_pred             hcChhhHHHHHh
Q 024315          215 ARDPKGLYKLAR  226 (269)
Q Consensus       215 ~R~~k~l~~~~r  226 (269)
                      ....+.+++.++
T Consensus       178 ~~~~~~l~~~l~  189 (280)
T PRK13649        178 PKGRKELMTLFK  189 (280)
T ss_pred             HHHHHHHHHHHH
Confidence            988888776654

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.47  E-value=1.6e-13  Score=135.21  Aligned_cols=134  Identities=20%  Similarity=0.307  Sum_probs=92.5

Q ss_pred             eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhH-------HHH
Q 024315           91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDR-------VEN  159 (269)
Q Consensus        91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~-------~~~  159 (269)
                      ..++.++++++|+.++|+|+||||||||++.|+|.+ +|.+|.|.++|.++..    .+++.++|.+|+-       +++
T Consensus       358 il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~-~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~N  436 (582)
T PRK11176        358 ALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFY-DIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANN  436 (582)
T ss_pred             cccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhcc-CCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHH
Confidence            346679999999999999999999999999999988 5678999999988652    2233333333321       111


Q ss_pred             HHHH-------HHHHHHHH-----------hCCccee----eccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhc
Q 024315          160 IRRI-------GEVAKLFA-----------DAGVICI----ACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEAR  216 (269)
Q Consensus       160 ~~~l-------~~~a~~~~-----------~~g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R  216 (269)
                      +..-       .++...+.           ..|+...    ....++++++| ..+|+++.++++  +.+|||++.+|..
T Consensus       437 i~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~i--lilDEptsaLD~~  514 (582)
T PRK11176        437 IAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPI--LILDEATSALDTE  514 (582)
T ss_pred             HhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCE--EEEECccccCCHH
Confidence            1100       00111111           1222221    23357788777 699999999999  9999999999999


Q ss_pred             ChhhHHHHHhc
Q 024315          217 DPKGLYKLARE  227 (269)
Q Consensus       217 ~~k~l~~~~r~  227 (269)
                      ..+.+++.+..
T Consensus       515 t~~~i~~~l~~  525 (582)
T PRK11176        515 SERAIQAALDE  525 (582)
T ss_pred             HHHHHHHHHHH
Confidence            98887766554

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.47  E-value=1.9e-13  Score=122.92  Aligned_cols=143  Identities=19%  Similarity=0.201  Sum_probs=96.8

Q ss_pred             ceEEeeC-ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-----ccccCCCCChh
Q 024315           81 NILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----GLNRDLSFKAE  154 (269)
Q Consensus        81 ~~~~~~~-~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-----~l~~~~g~~~~  154 (269)
                      ++.+.+. ......++++++++|++++|+|+||||||||+++|+|.+ .+.+|.|.++|.++..     .++..++|.++
T Consensus         6 ~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q   84 (274)
T PRK13644          6 NVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLL-RPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQ   84 (274)
T ss_pred             EEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEECCccccHHHHHhheEEEEE
Confidence            4555552 345678889999999999999999999999999999987 4678999999987642     11222333333


Q ss_pred             hH---------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeC
Q 024315          155 DR---------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDV  208 (269)
Q Consensus       155 ~~---------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~  208 (269)
                      +.         .+++..            ...+...+...++..    .+...++++++| ..+++++.++++  +++|+
T Consensus        85 ~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~l--llLDE  162 (274)
T PRK13644         85 NPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPEC--LIFDE  162 (274)
T ss_pred             ChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCE--EEEeC
Confidence            21         011100            011222233344422    233456666666 689999999999  99999


Q ss_pred             ChhHHHhcChhhHHHHHh
Q 024315          209 PLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       209 p~~~l~~R~~k~l~~~~r  226 (269)
                      |+..++......+.+.++
T Consensus       163 Pt~gLD~~~~~~l~~~l~  180 (274)
T PRK13644        163 VTSMLDPDSGIAVLERIK  180 (274)
T ss_pred             CcccCCHHHHHHHHHHHH
Confidence            999999888777665554

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.47  E-value=3.7e-13  Score=118.40  Aligned_cols=144  Identities=23%  Similarity=0.252  Sum_probs=98.0

Q ss_pred             ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--ccccCCCCChhhH--
Q 024315           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--GLNRDLSFKAEDR--  156 (269)
Q Consensus        81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--~l~~~~g~~~~~~--  156 (269)
                      ++.+.+......+..++++.+|++++|+|+||||||||++.|++.+ ++..|.+.++|.++..  ..+..++|.+++.  
T Consensus         5 ~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~   83 (237)
T TIGR00968         5 NISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLE-QPDSGRIRLNGQDATRVHARDRKIGFVFQHYAL   83 (237)
T ss_pred             EEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEEcCcCChhhcCEEEEecChhh
Confidence            4555555566788899999999999999999999999999999987 4668999999987642  1112222222211  


Q ss_pred             ------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHH
Q 024315          157 ------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVC  213 (269)
Q Consensus       157 ------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l  213 (269)
                            .+++..            .......+...++..    .....++++++| ..+++++.++++  +++|+|+..+
T Consensus        84 ~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~l--lllDEP~~~L  161 (237)
T TIGR00968        84 FKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQV--LLLDEPFGAL  161 (237)
T ss_pred             ccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEcCCcccC
Confidence                  111110            011223333344422    123345566665 699999999999  9999999999


Q ss_pred             HhcChhhHHHHHhc
Q 024315          214 EARDPKGLYKLARE  227 (269)
Q Consensus       214 ~~R~~k~l~~~~r~  227 (269)
                      +....+.+++.+.+
T Consensus       162 D~~~~~~~~~~l~~  175 (237)
T TIGR00968       162 DAKVRKELRSWLRK  175 (237)
T ss_pred             CHHHHHHHHHHHHH
Confidence            99988887766654

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.46  E-value=4.8e-13  Score=117.24  Aligned_cols=145  Identities=19%  Similarity=0.170  Sum_probs=99.0

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc--cccCCCCChhhH-
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--LNRDLSFKAEDR-  156 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~--l~~~~g~~~~~~-  156 (269)
                      .++.+.+......++.++.+.+|++++|+|+||||||||+++|++.++ +..|.+.++|.++...  .+..+++.+++. 
T Consensus         4 ~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~-~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~   82 (232)
T cd03300           4 ENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET-PTSGEILLDGKDITNLPPHKRPVNTVFQNYA   82 (232)
T ss_pred             EeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEECCEEcCcCChhhcceEEEecccc
Confidence            355666655667889999999999999999999999999999999884 6689999999876421  112223222211 


Q ss_pred             -------HHHHHHH------------HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhH
Q 024315          157 -------VENIRRI------------GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV  212 (269)
Q Consensus       157 -------~~~~~~l------------~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~  212 (269)
                             .+++...            ......+...++..    .+...+.++++| ..+++++.++++  +++|+|+..
T Consensus        83 ~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~l--lllDEP~~g  160 (232)
T cd03300          83 LFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKV--LLLDEPLGA  160 (232)
T ss_pred             cCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE--EEEcCCccc
Confidence                   1111100            01122333334422    223345666665 689999999999  999999999


Q ss_pred             HHhcChhhHHHHHhc
Q 024315          213 CEARDPKGLYKLARE  227 (269)
Q Consensus       213 l~~R~~k~l~~~~r~  227 (269)
                      ++....+.+++.+++
T Consensus       161 LD~~~~~~l~~~l~~  175 (232)
T cd03300         161 LDLKLRKDMQLELKR  175 (232)
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999888866653

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.46  E-value=2.9e-13  Score=122.50  Aligned_cols=146  Identities=19%  Similarity=0.198  Sum_probs=97.2

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhc--c--CCccEEEECCeecCc------ccccCC
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH--W--RGKLTYILDGDNCRH------GLNRDL  149 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~--~--~~~g~i~l~g~~~~~------~l~~~~  149 (269)
                      .++.+.+......+++++.+.+|++++|+|+||||||||+++|+|.+.  +  +.+|.|.++|.++..      .++..+
T Consensus        43 ~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i  122 (286)
T PRK14275         43 KNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKI  122 (286)
T ss_pred             eeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcE
Confidence            456666655556788999999999999999999999999999999753  2  368999999977531      122233


Q ss_pred             CCChhhH-------HHHHHH------------H-HHHHHHHHhCCc--------ceeeccCChHHHHH-HHHHHhCCCCC
Q 024315          150 SFKAEDR-------VENIRR------------I-GEVAKLFADAGV--------ICIACLISPYRKDR-DACRSMLPEGD  200 (269)
Q Consensus       150 g~~~~~~-------~~~~~~------------l-~~~a~~~~~~g~--------~~iv~~~~~~~~~r-~~ar~ll~~~~  200 (269)
                      +|.+++.       .+++..            . ......+...++        ...+..+++++++| ..+++++.+++
T Consensus       123 ~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~  202 (286)
T PRK14275        123 GMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPE  202 (286)
T ss_pred             EEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            3333221       111100            0 011122222222        11233456666666 68999999999


Q ss_pred             ccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          201 FIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       201 ~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      +  +++|+|+..++....+.+.+.+++
T Consensus       203 l--llLDEPt~gLD~~~~~~l~~~L~~  227 (286)
T PRK14275        203 I--LLLDEPTSALDPKATAKIEDLIQE  227 (286)
T ss_pred             E--EEEeCCCccCCHHHHHHHHHHHHH
Confidence            9  999999999999888887766653

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.46  E-value=2.8e-13  Score=121.34  Aligned_cols=135  Identities=18%  Similarity=0.240  Sum_probs=92.8

Q ss_pred             eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhHH--------
Q 024315           90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDRV--------  157 (269)
Q Consensus        90 ~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~~--------  157 (269)
                      ...+.+++.+++|++++|+|+||||||||+++|++.+ ++.+|.|.++|.++..    ..+..++|.+++..        
T Consensus        27 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t  105 (267)
T PRK15112         27 EAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMI-EPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQR  105 (267)
T ss_pred             ceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCC-CCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchh
Confidence            4677889999999999999999999999999999988 4668999999987642    11122333332210        


Q ss_pred             --HHHH------------H-HHHHHHHHHhCCcc-e----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhc
Q 024315          158 --ENIR------------R-IGEVAKLFADAGVI-C----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEAR  216 (269)
Q Consensus       158 --~~~~------------~-l~~~a~~~~~~g~~-~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R  216 (269)
                        +.+.            . ...+...+...++. .    .+...++++++| ..+++++.++++  +++|||+..++..
T Consensus       106 v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~l--llLDEPt~~LD~~  183 (267)
T PRK15112        106 ISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKV--IIADEALASLDMS  183 (267)
T ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCE--EEEcCCcccCCHH
Confidence              0100            0 01122334444442 1    123456666666 688999999999  9999999999998


Q ss_pred             ChhhHHHHHhc
Q 024315          217 DPKGLYKLARE  227 (269)
Q Consensus       217 ~~k~l~~~~r~  227 (269)
                      ..+.+++.+++
T Consensus       184 ~~~~l~~~l~~  194 (267)
T PRK15112        184 MRSQLINLMLE  194 (267)
T ss_pred             HHHHHHHHHHH
Confidence            88877766553

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.46  E-value=2.1e-13  Score=122.64  Aligned_cols=144  Identities=15%  Similarity=0.194  Sum_probs=97.9

Q ss_pred             cceEEeeC-ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc------ccccCCCCC
Q 024315           80 TNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH------GLNRDLSFK  152 (269)
Q Consensus        80 ~~~~~~~~-~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~------~l~~~~g~~  152 (269)
                      .++.+.+. .....+++++++++|++++|+|+||||||||+++|++.+ ++.+|.|.++|.++..      .++..++|.
T Consensus         5 ~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v   83 (275)
T PRK13639          5 RDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGIL-KPTSGEVLIKGEPIKYDKKSLLEVRKTVGIV   83 (275)
T ss_pred             EEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCccEEEECCEECccccchHHHHHhheEEE
Confidence            34555553 344678889999999999999999999999999999988 4668999999987631      122333444


Q ss_pred             hhhH---------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEE
Q 024315          153 AEDR---------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFM  206 (269)
Q Consensus       153 ~~~~---------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~l  206 (269)
                      +++.         .+.+..            .......+...++..    .+...++++++| ..+++++.++++  +++
T Consensus        84 ~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~l--lll  161 (275)
T PRK13639         84 FQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEI--IVL  161 (275)
T ss_pred             eeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE--EEE
Confidence            3331         111110            011223333444422    233456666666 689999999999  999


Q ss_pred             eCChhHHHhcChhhHHHHHh
Q 024315          207 DVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       207 d~p~~~l~~R~~k~l~~~~r  226 (269)
                      |+|+..++....+.+.+.++
T Consensus       162 DEPt~gLD~~~~~~l~~~l~  181 (275)
T PRK13639        162 DEPTSGLDPMGASQIMKLLY  181 (275)
T ss_pred             eCCCcCCCHHHHHHHHHHHH
Confidence            99999999998887665554

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.46  E-value=5.3e-13  Score=116.55  Aligned_cols=142  Identities=18%  Similarity=0.065  Sum_probs=95.5

Q ss_pred             ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCC----ChhhH
Q 024315           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSF----KAEDR  156 (269)
Q Consensus        81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~----~~~~~  156 (269)
                      +++..+......+.+++.+++|++++|+|+||||||||+++|++.+ .+.+|.+.++|.++.. ......+    +..+.
T Consensus        27 ~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~p~~G~i~~~g~~~~~-~~~~~~~~~~~tv~en  104 (224)
T cd03220          27 GRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIY-PPDSGTVTVRGRVSSL-LGLGGGFNPELTGREN  104 (224)
T ss_pred             hhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEchh-hcccccCCCCCcHHHH
Confidence            4455566677889999999999999999999999999999999987 4678999999976531 1111111    11111


Q ss_pred             HHHHH--------HH-HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHH
Q 024315          157 VENIR--------RI-GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLY  222 (269)
Q Consensus       157 ~~~~~--------~l-~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~  222 (269)
                      .....        .. ......+...++..    .+...++++++| ..+++++.++++  +++|+|+..++...++.++
T Consensus       105 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l--lllDEP~~gLD~~~~~~~~  182 (224)
T cd03220         105 IYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDI--LLIDEVLAVGDAAFQEKCQ  182 (224)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCcccCCHHHHHHHH
Confidence            11000        00 01122222333322    234456666666 689999999999  9999999999998877766


Q ss_pred             HHHh
Q 024315          223 KLAR  226 (269)
Q Consensus       223 ~~~r  226 (269)
                      +.++
T Consensus       183 ~~l~  186 (224)
T cd03220         183 RRLR  186 (224)
T ss_pred             HHHH
Confidence            6554

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.46  E-value=1.5e-13  Score=138.17  Aligned_cols=133  Identities=23%  Similarity=0.281  Sum_probs=94.0

Q ss_pred             ccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhHH-------HHH
Q 024315           92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDRV-------ENI  160 (269)
Q Consensus        92 ~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~~-------~~~  160 (269)
                      .++.++++++|+.++|+|+||||||||++.|+|.+ ++.+|.|.+||.++..    .++..+++.+|+..       +++
T Consensus       481 L~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~-~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi  559 (694)
T TIGR03375       481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLY-QPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNI  559 (694)
T ss_pred             eeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHH
Confidence            45678999999999999999999999999999988 5779999999988763    34445555554321       111


Q ss_pred             HH------HHHHHHHHHhC-----------Cccee----eccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcCh
Q 024315          161 RR------IGEVAKLFADA-----------GVICI----ACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDP  218 (269)
Q Consensus       161 ~~------l~~~a~~~~~~-----------g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~  218 (269)
                      ..      ..++.......           |....    ....+++++|| ..+|+++.++++  +.+|||++.++....
T Consensus       560 ~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~i--liLDE~Ts~LD~~te  637 (694)
T TIGR03375       560 ALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPI--LLLDEPTSAMDNRSE  637 (694)
T ss_pred             hCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE--EEEeCCCCCCCHHHH
Confidence            10      00111111111           22221    23457777777 799999999999  999999999999998


Q ss_pred             hhHHHHHhc
Q 024315          219 KGLYKLARE  227 (269)
Q Consensus       219 k~l~~~~r~  227 (269)
                      +.+++.+++
T Consensus       638 ~~i~~~l~~  646 (694)
T TIGR03375       638 ERFKDRLKR  646 (694)
T ss_pred             HHHHHHHHH
Confidence            887766553

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.46  E-value=2.4e-13  Score=122.08  Aligned_cols=144  Identities=18%  Similarity=0.237  Sum_probs=94.7

Q ss_pred             cceEEeeC-ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccc-cCCCCChhhH-
Q 024315           80 TNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN-RDLSFKAEDR-  156 (269)
Q Consensus        80 ~~~~~~~~-~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~-~~~g~~~~~~-  156 (269)
                      .++.+.+. .....+.+++++++|++++|+|+||||||||+++|++.++ +.+|.+.++|.++..... ..++|.+++. 
T Consensus        10 ~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~   88 (272)
T PRK15056         10 NDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR-LASGKISILGQPTRQALQKNLVAYVPQSEE   88 (272)
T ss_pred             EeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEhHHhhccceEEEeccccc
Confidence            35555542 3446678899999999999999999999999999999884 668999999976532111 1112221110 


Q ss_pred             ---------HHHH---------------HHH-HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEE
Q 024315          157 ---------VENI---------------RRI-GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFM  206 (269)
Q Consensus       157 ---------~~~~---------------~~l-~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~l  206 (269)
                               .+.+               ... ......+...++..    .+...++++++| ..+++++.++++  +++
T Consensus        89 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~l--lll  166 (272)
T PRK15056         89 VDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQV--ILL  166 (272)
T ss_pred             cccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCE--EEE
Confidence                     0000               000 01112233334321    233456666666 699999999999  999


Q ss_pred             eCChhHHHhcChhhHHHHHh
Q 024315          207 DVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       207 d~p~~~l~~R~~k~l~~~~r  226 (269)
                      |+|+..++....+.+.+.++
T Consensus       167 DEPt~~LD~~~~~~l~~~L~  186 (272)
T PRK15056        167 DEPFTGVDVKTEARIISLLR  186 (272)
T ss_pred             eCCCccCCHHHHHHHHHHHH
Confidence            99999999998888776654

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.46  E-value=2.1e-13  Score=122.86  Aligned_cols=144  Identities=15%  Similarity=0.188  Sum_probs=96.6

Q ss_pred             cceEEeeC-ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChh
Q 024315           80 TNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAE  154 (269)
Q Consensus        80 ~~~~~~~~-~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~  154 (269)
                      .++.+.+. .....+++++++++|++++|+|+||||||||+++|+|.+ .+.+|.+.++|.++..    .++..++|..+
T Consensus         7 ~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q   85 (277)
T PRK13652          7 RDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGIL-KPTSGSVLIRGEPITKENIREVRKFVGLVFQ   85 (277)
T ss_pred             EEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEECCcCCHHHHHhheEEEec
Confidence            45555553 334678889999999999999999999999999999987 4678999999987642    11222333222


Q ss_pred             hH---------HHHHHHH------------HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeC
Q 024315          155 DR---------VENIRRI------------GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDV  208 (269)
Q Consensus       155 ~~---------~~~~~~l------------~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~  208 (269)
                      +.         .+++...            ..+...+...++..    .+...++++++| ..+++++.++++  +++|+
T Consensus        86 ~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~l--lilDE  163 (277)
T PRK13652         86 NPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQV--LVLDE  163 (277)
T ss_pred             CcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCE--EEEeC
Confidence            21         1111100            01122233334322    233456666666 689999999999  99999


Q ss_pred             ChhHHHhcChhhHHHHHh
Q 024315          209 PLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       209 p~~~l~~R~~k~l~~~~r  226 (269)
                      |+..++....+.+++.++
T Consensus       164 Pt~gLD~~~~~~l~~~l~  181 (277)
T PRK13652        164 PTAGLDPQGVKELIDFLN  181 (277)
T ss_pred             CcccCCHHHHHHHHHHHH
Confidence            999999888887766554

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.46  E-value=3.4e-13  Score=124.60  Aligned_cols=135  Identities=19%  Similarity=0.232  Sum_probs=93.8

Q ss_pred             eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-------ccccCCCCChhhH-----
Q 024315           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-------GLNRDLSFKAEDR-----  156 (269)
Q Consensus        89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-------~l~~~~g~~~~~~-----  156 (269)
                      +...++++|.+++|++++|+|+||||||||+++|++++. +.+|.|.++|.++..       .++..++|..|+.     
T Consensus        34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~-p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~  112 (331)
T PRK15079         34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK-ATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLN  112 (331)
T ss_pred             eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC-CCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcC
Confidence            567889999999999999999999999999999999884 678999999988642       1222333333321     


Q ss_pred             -----HHHHH-------------HH-HHHHHHHHhCCcc-----eeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChh
Q 024315          157 -----VENIR-------------RI-GEVAKLFADAGVI-----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQ  211 (269)
Q Consensus       157 -----~~~~~-------------~l-~~~a~~~~~~g~~-----~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~  211 (269)
                           .+++.             .. ..+..++...++.     .....+++++++| .++++++.++++  +++|||+.
T Consensus       113 p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~l--lilDEPts  190 (331)
T PRK15079        113 PRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKL--IICDEPVS  190 (331)
T ss_pred             CCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCE--EEEeCCCc
Confidence                 01110             00 0112233344441     1233457777777 699999999999  99999999


Q ss_pred             HHHhcChhhHHHHHh
Q 024315          212 VCEARDPKGLYKLAR  226 (269)
Q Consensus       212 ~l~~R~~k~l~~~~r  226 (269)
                      .++...++.+.+.++
T Consensus       191 ~LD~~~~~~i~~lL~  205 (331)
T PRK15079        191 ALDVSIQAQVVNLLQ  205 (331)
T ss_pred             cCCHHHHHHHHHHHH
Confidence            999888877655443

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.46  E-value=4.1e-13  Score=119.64  Aligned_cols=146  Identities=18%  Similarity=0.163  Sum_probs=98.0

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccC----CccEEEECCeecCc------ccccCC
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR----GKLTYILDGDNCRH------GLNRDL  149 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~----~~g~i~l~g~~~~~------~l~~~~  149 (269)
                      .++.+.+......+.+++++.+|++++|+|+||||||||++.|++.+++.    .+|.+.++|.++..      .++..+
T Consensus        11 ~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i   90 (259)
T PRK14260         11 KDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQI   90 (259)
T ss_pred             EEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhhe
Confidence            46666665566778899999999999999999999999999999988532    37999999987631      112223


Q ss_pred             CCChhhH-------HHHHHH------------H-HHHHHHHHhCCcc--------eeeccCChHHHHH-HHHHHhCCCCC
Q 024315          150 SFKAEDR-------VENIRR------------I-GEVAKLFADAGVI--------CIACLISPYRKDR-DACRSMLPEGD  200 (269)
Q Consensus       150 g~~~~~~-------~~~~~~------------l-~~~a~~~~~~g~~--------~iv~~~~~~~~~r-~~ar~ll~~~~  200 (269)
                      +|.+++.       .+++..            . ......+...++.        ..+...++++++| ..+++++.+++
T Consensus        91 ~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~  170 (259)
T PRK14260         91 GMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPK  170 (259)
T ss_pred             EEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence            3322221       111110            0 0111223333321        1223456666666 68999999999


Q ss_pred             ccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          201 FIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       201 ~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      +  +++|+|+..++....+.+++.++.
T Consensus       171 l--llLDEPt~~LD~~~~~~l~~~l~~  195 (259)
T PRK14260        171 V--LLMDEPCSALDPIATMKVEELIHS  195 (259)
T ss_pred             E--EEEcCCCccCCHHHHHHHHHHHHH
Confidence            9  999999999999888887766553

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.46  E-value=2.1e-13  Score=120.82  Aligned_cols=144  Identities=20%  Similarity=0.155  Sum_probs=95.8

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee-----cCc--------ccc
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN-----CRH--------GLN  146 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~-----~~~--------~l~  146 (269)
                      .++.+.+......+++++.+.+|++++|+|+||||||||++.|++.+ ++.+|.|.++|.+     +..        ..+
T Consensus         7 ~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~   85 (253)
T TIGR02323         7 SGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRL-APDHGTATYIMRSGAELELYQLSEAERRRLMR   85 (253)
T ss_pred             eeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEEecccccccccccCCHHHHHHhhh
Confidence            45555554445678889999999999999999999999999999987 4668999999865     321        011


Q ss_pred             cCCCCChhhH----------HHHHH------------H-HHHHHHHHHhCCcce-----eeccCChHHHHH-HHHHHhCC
Q 024315          147 RDLSFKAEDR----------VENIR------------R-IGEVAKLFADAGVIC-----IACLISPYRKDR-DACRSMLP  197 (269)
Q Consensus       147 ~~~g~~~~~~----------~~~~~------------~-l~~~a~~~~~~g~~~-----iv~~~~~~~~~r-~~ar~ll~  197 (269)
                      ..++|..++.          .+.+.            . .......+...++..     .+...++++++| ..+++++.
T Consensus        86 ~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~  165 (253)
T TIGR02323        86 TEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVT  165 (253)
T ss_pred             cceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhc
Confidence            1223322221          00100            0 011222333334321     233456666666 69999999


Q ss_pred             CCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315          198 EGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       198 ~~~~~~i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      ++++  +++|+|+..++....+.+++.++
T Consensus       166 ~p~v--lllDEP~~~LD~~~~~~l~~~l~  192 (253)
T TIGR02323       166 RPRL--VFMDEPTGGLDVSVQARLLDLLR  192 (253)
T ss_pred             CCCE--EEEcCCCccCCHHHHHHHHHHHH
Confidence            9999  99999999999998888776554

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.46  E-value=2.3e-13  Score=125.18  Aligned_cols=144  Identities=17%  Similarity=0.121  Sum_probs=97.6

Q ss_pred             cceEEeeCc-----eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-----------
Q 024315           80 TNILWHKNS-----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----------  143 (269)
Q Consensus        80 ~~~~~~~~~-----v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-----------  143 (269)
                      .++++.+..     ....+++++.+.+|++++|+|+||||||||+++|++++ .+.+|.|.++|.++..           
T Consensus        25 ~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~-~p~~G~I~i~g~~~~~~~~~~~~~~~~  103 (320)
T PRK13631         25 KNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLI-KSKYGTIQVGDIYIGDKKNNHELITNP  103 (320)
T ss_pred             EeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCeEEECCEEcccccccccccccc
Confidence            456665532     24678889999999999999999999999999999988 4678999999866532           


Q ss_pred             ---------ccccCCCCChhhH---------HHHHHH-----------H-HHHHHHHHhCCcc-e----eeccCChHHHH
Q 024315          144 ---------GLNRDLSFKAEDR---------VENIRR-----------I-GEVAKLFADAGVI-C----IACLISPYRKD  188 (269)
Q Consensus       144 ---------~l~~~~g~~~~~~---------~~~~~~-----------l-~~~a~~~~~~g~~-~----iv~~~~~~~~~  188 (269)
                               .++..++|..|+.         .+++..           . ......+...++. .    .+..+++++++
T Consensus       104 ~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkq  183 (320)
T PRK13631        104 YSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKR  183 (320)
T ss_pred             cccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHH
Confidence                     1122334333321         111100           0 1112223333442 1    23345677777


Q ss_pred             H-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315          189 R-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       189 r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      | .++++++.++++  +++|+|+..++....+.+.+.++
T Consensus       184 RvaiAraL~~~p~i--LLLDEPtsgLD~~~~~~l~~~L~  220 (320)
T PRK13631        184 RVAIAGILAIQPEI--LIFDEPTAGLDPKGEHEMMQLIL  220 (320)
T ss_pred             HHHHHHHHHcCCCE--EEEECCccCCCHHHHHHHHHHHH
Confidence            7 689999999999  99999999999998888776554

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.46  E-value=2.3e-13  Score=118.06  Aligned_cols=144  Identities=23%  Similarity=0.284  Sum_probs=93.8

Q ss_pred             ceEEeeCc--eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChh
Q 024315           81 NILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAE  154 (269)
Q Consensus        81 ~~~~~~~~--v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~  154 (269)
                      ++.+.+..  ....++.++.+++|++++|+|+||||||||+++|++.+ .+..|.+.++|.++..    ..+..++|.++
T Consensus         7 ~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q   85 (220)
T cd03245           7 NVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLY-KPTSGSVLLDGTDIRQLDPADLRRNIGYVPQ   85 (220)
T ss_pred             EEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-CCCCCeEEECCEEhHHCCHHHHHhhEEEeCC
Confidence            44444432  34678889999999999999999999999999999987 4668999999976531    11112222222


Q ss_pred             hH-------HHHHHH------HHHHHHHHHhCCcce---------------eeccCChHHHHH-HHHHHhCCCCCccEEE
Q 024315          155 DR-------VENIRR------IGEVAKLFADAGVIC---------------IACLISPYRKDR-DACRSMLPEGDFIEVF  205 (269)
Q Consensus       155 ~~-------~~~~~~------l~~~a~~~~~~g~~~---------------iv~~~~~~~~~r-~~ar~ll~~~~~~~i~  205 (269)
                      +.       .+.+..      -......+...++..               .....++++++| ..+++++.++++  ++
T Consensus        86 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~l--ll  163 (220)
T cd03245          86 DVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPI--LL  163 (220)
T ss_pred             CCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCE--EE
Confidence            11       111100      001111111112211               112456666666 689999999998  99


Q ss_pred             EeCChhHHHhcChhhHHHHHhc
Q 024315          206 MDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       206 ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      +|+|+..++....+.+++.+++
T Consensus       164 lDEPt~~LD~~~~~~l~~~l~~  185 (220)
T cd03245         164 LDEPTSAMDMNSEERLKERLRQ  185 (220)
T ss_pred             EeCccccCCHHHHHHHHHHHHH
Confidence            9999999999998888877664

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.46  E-value=5.7e-13  Score=118.10  Aligned_cols=145  Identities=17%  Similarity=0.163  Sum_probs=97.0

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhc--c--CCccEEEECCeecCc------ccccCC
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH--W--RGKLTYILDGDNCRH------GLNRDL  149 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~--~--~~~g~i~l~g~~~~~------~l~~~~  149 (269)
                      .++++.+......+.+++.+.+|++++|+|+||||||||+++|++.++  +  +.+|.|.++|.++..      .++..+
T Consensus         8 ~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i   87 (252)
T PRK14256          8 EQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRV   87 (252)
T ss_pred             EEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccE
Confidence            466666655667889999999999999999999999999999999874  2  247999999987632      112222


Q ss_pred             CCChhh--------HHHHHHH------------H-HHHHHHHHhCCcc--------eeeccCChHHHHH-HHHHHhCCCC
Q 024315          150 SFKAED--------RVENIRR------------I-GEVAKLFADAGVI--------CIACLISPYRKDR-DACRSMLPEG  199 (269)
Q Consensus       150 g~~~~~--------~~~~~~~------------l-~~~a~~~~~~g~~--------~iv~~~~~~~~~r-~~ar~ll~~~  199 (269)
                      +|.+++        ..+++..            . ......+...++.        ..+...++++++| ..+++++.++
T Consensus        88 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p  167 (252)
T PRK14256         88 GMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKP  167 (252)
T ss_pred             EEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCC
Confidence            222221        1111110            0 0112223333331        1133356666666 6889999999


Q ss_pred             CccEEEEeCChhHHHhcChhhHHHHHh
Q 024315          200 DFIEVFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       200 ~~~~i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      ++  +++|+|+..++....+.+++.++
T Consensus       168 ~l--lllDEP~~gLD~~~~~~l~~~l~  192 (252)
T PRK14256        168 EV--ILMDEPASALDPISTLKIEELIE  192 (252)
T ss_pred             CE--EEEcCCcccCCHHHHHHHHHHHH
Confidence            98  99999999999988887776554

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.46  E-value=4.8e-13  Score=123.53  Aligned_cols=137  Identities=16%  Similarity=0.171  Sum_probs=95.1

Q ss_pred             ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc---CCccEEEECCeecCc----cc----ccCCCCChhhH
Q 024315           88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW---RGKLTYILDGDNCRH----GL----NRDLSFKAEDR  156 (269)
Q Consensus        88 ~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~---~~~g~i~l~g~~~~~----~l----~~~~g~~~~~~  156 (269)
                      .+.+.++++|.+++|++++|+|+||||||||+++|++++.+   +.+|.|.++|.++..    .+    ++.++|..|+.
T Consensus        19 ~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~   98 (330)
T PRK15093         19 WVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEP   98 (330)
T ss_pred             CEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCc
Confidence            46678999999999999999999999999999999998853   457999999987642    00    12334333321


Q ss_pred             H----------HHHH------------------HHHHHHHHHHhCCcce-------eeccCChHHHHH-HHHHHhCCCCC
Q 024315          157 V----------ENIR------------------RIGEVAKLFADAGVIC-------IACLISPYRKDR-DACRSMLPEGD  200 (269)
Q Consensus       157 ~----------~~~~------------------~l~~~a~~~~~~g~~~-------iv~~~~~~~~~r-~~ar~ll~~~~  200 (269)
                      .          +.+.                  ....+...+...++..       ....+++++++| .++++++.+++
T Consensus        99 ~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~  178 (330)
T PRK15093         99 QSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPR  178 (330)
T ss_pred             chhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCC
Confidence            1          0000                  0012233444455531       233456777777 69999999999


Q ss_pred             ccEEEEeCChhHHHhcChhhHHHHHh
Q 024315          201 FIEVFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       201 ~~~i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      +  +++|||+..++...++.+.+.++
T Consensus       179 l--lilDEPts~LD~~~~~~i~~lL~  202 (330)
T PRK15093        179 L--LIADEPTNAMEPTTQAQIFRLLT  202 (330)
T ss_pred             E--EEEeCCCCcCCHHHHHHHHHHHH
Confidence            9  99999999999888777665544

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.46  E-value=3.2e-13  Score=119.99  Aligned_cols=145  Identities=21%  Similarity=0.195  Sum_probs=96.0

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc---CCccEEEECCeecCc-cc-ccCCCCChh
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW---RGKLTYILDGDNCRH-GL-NRDLSFKAE  154 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~---~~~g~i~l~g~~~~~-~l-~~~~g~~~~  154 (269)
                      .++++.+ .....+..++.+.+|++++|+|+||||||||++.|+|.+++   +.+|.|.++|.++.. .. +..++|.++
T Consensus         8 ~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q   86 (254)
T PRK10418          8 RNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQ   86 (254)
T ss_pred             eCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEec
Confidence            3555554 34467788999999999999999999999999999998853   168999999987631 11 112222222


Q ss_pred             hH----------HHHHH----H------HHHHHHHHHhCCcce-------eeccCChHHHHH-HHHHHhCCCCCccEEEE
Q 024315          155 DR----------VENIR----R------IGEVAKLFADAGVIC-------IACLISPYRKDR-DACRSMLPEGDFIEVFM  206 (269)
Q Consensus       155 ~~----------~~~~~----~------l~~~a~~~~~~g~~~-------iv~~~~~~~~~r-~~ar~ll~~~~~~~i~l  206 (269)
                      +.          .+...    .      ...+...+...++..       .+...++++++| ..+++++.++++  +++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~l--LlL  164 (254)
T PRK10418         87 NPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPF--IIA  164 (254)
T ss_pred             CCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCE--EEE
Confidence            21          00000    0      011223334444422       123356666666 699999999999  999


Q ss_pred             eCChhHHHhcChhhHHHHHhc
Q 024315          207 DVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       207 d~p~~~l~~R~~k~l~~~~r~  227 (269)
                      |+|+..++......+++.+++
T Consensus       165 DEPt~~LD~~~~~~l~~~L~~  185 (254)
T PRK10418        165 DEPTTDLDVVAQARILDLLES  185 (254)
T ss_pred             eCCCcccCHHHHHHHHHHHHH
Confidence            999999999888777666543

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=99.46  E-value=1.4e-12  Score=108.78  Aligned_cols=145  Identities=21%  Similarity=0.262  Sum_probs=89.5

Q ss_pred             EcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--ccc---cCCCCChhhHHHHHHHHHHHHHHHHhC-Ccceeecc
Q 024315          108 TGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--GLN---RDLSFKAEDRVENIRRIGEVAKLFADA-GVICIACL  181 (269)
Q Consensus       108 ~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--~l~---~~~g~~~~~~~~~~~~l~~~a~~~~~~-g~~~iv~~  181 (269)
                      +|+|||||||+++.|++.+.     .+++++|.+..  .++   .+..+....+..+...+...+...... +..+++ +
T Consensus         1 ~G~sGsGKSTla~~la~~l~-----~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv-~   74 (163)
T PRK11545          1 MGVSGSGKSAVASEVAHQLH-----AAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLIV-C   74 (163)
T ss_pred             CCCCCCcHHHHHHHHHHHhC-----CeEEeCccCCchhhhccccCCCCCChhhHHHHHHHHHHHHHHHHHcCCceEEE-E
Confidence            59999999999999999883     46889886421  111   122344444445555555554433333 333344 4


Q ss_pred             CChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCcccc---ccccccccCCCCCCC---eEEEcCCC
Q 024315          182 ISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKG---FTGIDDPYEPPLNCE---VGVHVWYR  255 (269)
Q Consensus       182 ~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~---~~~i~~~~e~p~~~e---~~id~~~~  255 (269)
                      ....+..|+.+++  ..++|..+++++|.+.|.+|..+      |.++...   +..+...||+|+..|   ++||++  
T Consensus        75 s~~~~~~r~~~~~--~~~~~~~v~l~a~~~~l~~Rl~~------R~~~~a~~~vl~~Q~~~~ep~~~~e~~~~~id~~--  144 (163)
T PRK11545         75 SALKKHYRDLLRE--GNPNLSFIYLKGDFDVIESRLKA------RKGHFFKTQMLVTQFETLQEPGADETDVLVVDID--  144 (163)
T ss_pred             ecchHHHHHHHHc--cCCCEEEEEEECCHHHHHHHHHh------ccCCCCCHHHHHHHHHHcCCCCCCCCCEEEEeCC--
Confidence            5555667777776  33467779999999999999744      3333211   233345688887644   567774  


Q ss_pred             cCHHHHHH-HHhhc
Q 024315          256 FELAETWR-ITKWL  268 (269)
Q Consensus       256 ~~~~~~~~-i~~~~  268 (269)
                      .++++++. +.+||
T Consensus       145 ~~~~~~~~~~~~~~  158 (163)
T PRK11545        145 QPLEGVVASTIEVI  158 (163)
T ss_pred             CCHHHHHHHHHHHH
Confidence            45666655 55554

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.46  E-value=4e-13  Score=119.82  Aligned_cols=146  Identities=17%  Similarity=0.223  Sum_probs=97.2

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccC--CccEEEECCeecCc---------ccccC
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR--GKLTYILDGDNCRH---------GLNRD  148 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~--~~g~i~l~g~~~~~---------~l~~~  148 (269)
                      .++.+.+......+.+++.+.+|++++|+|+||||||||++.|+|.+.+.  .+|.|.++|.++..         .++..
T Consensus         8 ~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~   87 (262)
T PRK09984          8 EKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRAN   87 (262)
T ss_pred             eeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhh
Confidence            45666655566778899999999999999999999999999999988542  25899999977531         01111


Q ss_pred             CCCChhhH--------HHHHH--------------------HHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHh
Q 024315          149 LSFKAEDR--------VENIR--------------------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSM  195 (269)
Q Consensus       149 ~g~~~~~~--------~~~~~--------------------~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~l  195 (269)
                      ++|.+++.        .+++.                    ....+...+...++..    .+..+++++++| ..++++
T Consensus        88 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral  167 (262)
T PRK09984         88 TGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARAL  167 (262)
T ss_pred             eEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHH
Confidence            22222210        11110                    0011222333334421    233456666666 688999


Q ss_pred             CCCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       196 l~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      +.++++  +++|+|+..++....+.+.+.+++
T Consensus       168 ~~~p~l--lllDEPt~~LD~~~~~~l~~~l~~  197 (262)
T PRK09984        168 MQQAKV--ILADEPIASLDPESARIVMDTLRD  197 (262)
T ss_pred             hcCCCE--EEecCccccCCHHHHHHHHHHHHH
Confidence            999998  999999999999988887766553

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.45  E-value=4.8e-13  Score=118.54  Aligned_cols=146  Identities=20%  Similarity=0.147  Sum_probs=98.2

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhc--c--CCccEEEECCeecCc------ccccCC
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH--W--RGKLTYILDGDNCRH------GLNRDL  149 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~--~--~~~g~i~l~g~~~~~------~l~~~~  149 (269)
                      .++.+.+......+.+++.+.+|++++|+|+||||||||+++|+|.+.  +  +..|.|.++|.++..      .++..+
T Consensus         9 ~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i   88 (251)
T PRK14244          9 KNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKV   88 (251)
T ss_pred             eeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhE
Confidence            456666655667888999999999999999999999999999999874  1  358999999977531      112223


Q ss_pred             CCChhhH-------HHHHHH-------------H-HHHHHHHHhCCcce--------eeccCChHHHHH-HHHHHhCCCC
Q 024315          150 SFKAEDR-------VENIRR-------------I-GEVAKLFADAGVIC--------IACLISPYRKDR-DACRSMLPEG  199 (269)
Q Consensus       150 g~~~~~~-------~~~~~~-------------l-~~~a~~~~~~g~~~--------iv~~~~~~~~~r-~~ar~ll~~~  199 (269)
                      +|.+++.       .+++..             . ..+...+...++..        -....++++++| ..+++++.++
T Consensus        89 ~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p  168 (251)
T PRK14244         89 GMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKP  168 (251)
T ss_pred             EEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCC
Confidence            3322211       111110             0 01122334444421        123346666666 6899999999


Q ss_pred             CccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          200 DFIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       200 ~~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      ++  +++|+|+..++....+.+++.+++
T Consensus       169 ~l--lllDEPt~~LD~~~~~~l~~~l~~  194 (251)
T PRK14244        169 TM--LLMDEPCSALDPVATNVIENLIQE  194 (251)
T ss_pred             CE--EEEeCCCccCCHHHHHHHHHHHHH
Confidence            98  999999999999888887766654

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.45  E-value=4.3e-13  Score=112.44  Aligned_cols=149  Identities=21%  Similarity=0.239  Sum_probs=101.2

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHH
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVEN  159 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~  159 (269)
                      .++...++.-.....+|+..++|.+|.|+|.|||||||+++++.= |..|..|.|.++|..++---.++-.+.+.++.+.
T Consensus        10 ~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~-LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~   88 (256)
T COG4598          10 EDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINF-LEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQL   88 (256)
T ss_pred             hHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHh-hcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHH
Confidence            456666777777889999999999999999999999999999975 5578899999999988631111111222221111


Q ss_pred             HHHHHHHHHHHHhCCc------------------------------------------ceeeccCChHHHHH-HHHHHhC
Q 024315          160 IRRIGEVAKLFADAGV------------------------------------------ICIACLISPYRKDR-DACRSML  196 (269)
Q Consensus       160 ~~~l~~~a~~~~~~g~------------------------------------------~~iv~~~~~~~~~r-~~ar~ll  196 (269)
                      -+.-.++.+.|+.+++                                          ..+..+.++++++| .++|++.
T Consensus        89 ~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLa  168 (256)
T COG4598          89 QRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALA  168 (256)
T ss_pred             HHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHh
Confidence            0001122233333222                                          12355667888888 5889888


Q ss_pred             CCCCccEEEEeCChhHHHhcChhhH----HHHHhcCccc
Q 024315          197 PEGDFIEVFMDVPLQVCEARDPKGL----YKLAREGKVK  231 (269)
Q Consensus       197 ~~~~~~~i~ld~p~~~l~~R~~k~l----~~~~r~g~~~  231 (269)
                      -+|.+  +++|+|+..+++...-..    .+.+.+|+.+
T Consensus       169 meP~v--mLFDEPTSALDPElVgEVLkv~~~LAeEgrTM  205 (256)
T COG4598         169 MEPEV--MLFDEPTSALDPELVGEVLKVMQDLAEEGRTM  205 (256)
T ss_pred             cCCce--EeecCCcccCCHHHHHHHHHHHHHHHHhCCeE
Confidence            88888  899999999998877653    3556667654

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.45  E-value=4.4e-13  Score=118.75  Aligned_cols=146  Identities=20%  Similarity=0.224  Sum_probs=96.8

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCC----ccEEEECCeecCc------ccccCC
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG----KLTYILDGDNCRH------GLNRDL  149 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~----~g~i~l~g~~~~~------~l~~~~  149 (269)
                      .++.+.+......+..++.+.+|++++|+|+||||||||++.|++.+.+..    .|.|.++|.++..      .++..+
T Consensus         8 ~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i   87 (251)
T PRK14249          8 RGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRV   87 (251)
T ss_pred             EEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceE
Confidence            456666655567789999999999999999999999999999999885321    5899999987631      112223


Q ss_pred             CCChhhH-------HHHHHH------------HHH-HHHHHHhCCc--------ceeeccCChHHHHH-HHHHHhCCCCC
Q 024315          150 SFKAEDR-------VENIRR------------IGE-VAKLFADAGV--------ICIACLISPYRKDR-DACRSMLPEGD  200 (269)
Q Consensus       150 g~~~~~~-------~~~~~~------------l~~-~a~~~~~~g~--------~~iv~~~~~~~~~r-~~ar~ll~~~~  200 (269)
                      +|.+++.       .+++..            ..+ ....+...++        ...+...++++++| ..+++++.+++
T Consensus        88 ~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~  167 (251)
T PRK14249         88 GMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPE  167 (251)
T ss_pred             EEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence            3322211       111100            000 1111222222        11233456666666 69999999999


Q ss_pred             ccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          201 FIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       201 ~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      +  +++|+|+..++....+.+++.+++
T Consensus       168 l--llLDEPt~~LD~~~~~~l~~~l~~  192 (251)
T PRK14249        168 V--ILMDEPCSALDPVSTMRIEELMQE  192 (251)
T ss_pred             E--EEEeCCCccCCHHHHHHHHHHHHH
Confidence            9  999999999999988887766654

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.45  E-value=4.3e-13  Score=116.01  Aligned_cols=140  Identities=19%  Similarity=0.169  Sum_probs=94.0

Q ss_pred             ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--------ccccCCCCC
Q 024315           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--------GLNRDLSFK  152 (269)
Q Consensus        81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--------~l~~~~g~~  152 (269)
                      +++..++....  ++++++++ ++++|+|+||||||||++.|++.+ .+.+|.+.++|.++..        ..+..++|.
T Consensus         5 ~l~~~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~   80 (214)
T cd03297           5 DIEKRLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLE-KPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLV   80 (214)
T ss_pred             eeeEecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEecccccchhhhhhHhhcEEEE
Confidence            45555655544  89999999 999999999999999999999988 4668999999976531        011122222


Q ss_pred             hhh--------HHHHHH----------HHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCC
Q 024315          153 AED--------RVENIR----------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVP  209 (269)
Q Consensus       153 ~~~--------~~~~~~----------~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p  209 (269)
                      +++        ..+++.          ........+...++..    .+...++++++| ..+++++.++++  +++|+|
T Consensus        81 ~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l--lllDEP  158 (214)
T cd03297          81 FQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPEL--LLLDEP  158 (214)
T ss_pred             ecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCE--EEEcCC
Confidence            211        011111          0011223344444422    233456666666 689999999999  999999


Q ss_pred             hhHHHhcChhhHHHHHh
Q 024315          210 LQVCEARDPKGLYKLAR  226 (269)
Q Consensus       210 ~~~l~~R~~k~l~~~~r  226 (269)
                      +..++....+.+++.++
T Consensus       159 t~~LD~~~~~~l~~~l~  175 (214)
T cd03297         159 FSALDRALRLQLLPELK  175 (214)
T ss_pred             cccCCHHHHHHHHHHHH
Confidence            99999998888776654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.45  E-value=7e-13  Score=118.58  Aligned_cols=146  Identities=18%  Similarity=0.166  Sum_probs=96.2

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc----CCccEEEECCeecCc------ccccCC
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH------GLNRDL  149 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~----~~~g~i~l~g~~~~~------~l~~~~  149 (269)
                      .++.+.+......+++++.+.+|++++|+|+||||||||+++|++.+..    +.+|.|.++|.++..      .++..+
T Consensus        14 ~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i   93 (264)
T PRK14243         14 ENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRI   93 (264)
T ss_pred             eeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhE
Confidence            4566666555667889999999999999999999999999999998742    357999999977631      112222


Q ss_pred             CCChhh-------HHHHHHH----------H-HHHHHHHHhCCcc--------eeeccCChHHHHH-HHHHHhCCCCCcc
Q 024315          150 SFKAED-------RVENIRR----------I-GEVAKLFADAGVI--------CIACLISPYRKDR-DACRSMLPEGDFI  202 (269)
Q Consensus       150 g~~~~~-------~~~~~~~----------l-~~~a~~~~~~g~~--------~iv~~~~~~~~~r-~~ar~ll~~~~~~  202 (269)
                      +|..++       ..+++..          . ......+...++.        ..+...++++++| ..+++++.++++ 
T Consensus        94 ~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~l-  172 (264)
T PRK14243         94 GMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEV-  172 (264)
T ss_pred             EEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCE-
Confidence            332221       1111110          0 0111112222221        1223356666666 699999999999 


Q ss_pred             EEEEeCChhHHHhcChhhHHHHHhc
Q 024315          203 EVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       203 ~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                       +++|+|+..++....+.+.+.+++
T Consensus       173 -llLDEPt~~LD~~~~~~l~~~L~~  196 (264)
T PRK14243        173 -ILMDEPCSALDPISTLRIEELMHE  196 (264)
T ss_pred             -EEEeCCCccCCHHHHHHHHHHHHH
Confidence             999999999999988887766543

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.45  E-value=4.8e-13  Score=118.52  Aligned_cols=146  Identities=20%  Similarity=0.197  Sum_probs=96.5

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc----CCccEEEECCeecCc------ccccCC
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH------GLNRDL  149 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~----~~~g~i~l~g~~~~~------~l~~~~  149 (269)
                      .++.+.+......+.+++++.+|++++|+|+||||||||+++|+|.+.+    +.+|.|.++|.++..      ..+..+
T Consensus         8 ~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i   87 (251)
T PRK14270          8 KNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRV   87 (251)
T ss_pred             EEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhhe
Confidence            4555555555567888999999999999999999999999999998753    257999999987632      112222


Q ss_pred             CCChhhH-------HHHHHH---H----------HHHHHHHHhCCcc--------eeeccCChHHHHH-HHHHHhCCCCC
Q 024315          150 SFKAEDR-------VENIRR---I----------GEVAKLFADAGVI--------CIACLISPYRKDR-DACRSMLPEGD  200 (269)
Q Consensus       150 g~~~~~~-------~~~~~~---l----------~~~a~~~~~~g~~--------~iv~~~~~~~~~r-~~ar~ll~~~~  200 (269)
                      +|.+++.       .+++..   .          ......+...++.        ......++++++| ..+++++.+++
T Consensus        88 ~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~  167 (251)
T PRK14270         88 GMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPD  167 (251)
T ss_pred             EEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence            3222211       111110   0          0111223333321        1233446666666 68899999999


Q ss_pred             ccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          201 FIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       201 ~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      +  +++|+|+..++......+++.+++
T Consensus       168 l--lllDEP~~~LD~~~~~~l~~~L~~  192 (251)
T PRK14270        168 V--ILMDEPTSALDPISTLKIEDLMVE  192 (251)
T ss_pred             E--EEEeCCcccCCHHHHHHHHHHHHH
Confidence            8  999999999999888877766553

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.45  E-value=5.9e-13  Score=119.78  Aligned_cols=146  Identities=18%  Similarity=0.149  Sum_probs=97.8

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc-C---CccEEEECCeecCc------ccccCC
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW-R---GKLTYILDGDNCRH------GLNRDL  149 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~-~---~~g~i~l~g~~~~~------~l~~~~  149 (269)
                      .++.+.+......+++++.+.+|++++|+|+||||||||+++|+|.+.. +   .+|.+.++|.++..      .++..+
T Consensus        24 ~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i  103 (274)
T PRK14265         24 EGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQV  103 (274)
T ss_pred             eeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcE
Confidence            4666666555677889999999999999999999999999999998752 2   47999999987631      112223


Q ss_pred             CCChhh-------HHHHHHH----------H-HHHHHHHHhCCc--------ceeeccCChHHHHH-HHHHHhCCCCCcc
Q 024315          150 SFKAED-------RVENIRR----------I-GEVAKLFADAGV--------ICIACLISPYRKDR-DACRSMLPEGDFI  202 (269)
Q Consensus       150 g~~~~~-------~~~~~~~----------l-~~~a~~~~~~g~--------~~iv~~~~~~~~~r-~~ar~ll~~~~~~  202 (269)
                      +|.+++       ..+++..          . ......+...++        ...+...++++++| ..+++++.++++ 
T Consensus       104 ~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~l-  182 (274)
T PRK14265        104 GMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDV-  182 (274)
T ss_pred             EEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCE-
Confidence            333322       1111110          0 001111222222        11223356666666 699999999999 


Q ss_pred             EEEEeCChhHHHhcChhhHHHHHhc
Q 024315          203 EVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       203 ~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                       +++|+|+..++....+.+++.+++
T Consensus       183 -llLDEPt~~LD~~~~~~l~~~L~~  206 (274)
T PRK14265        183 -LLMDEPCSALDPISTRQVEELCLE  206 (274)
T ss_pred             -EEEeCCcccCCHHHHHHHHHHHHH
Confidence             999999999999998887766654

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.45  E-value=5.6e-13  Score=119.50  Aligned_cols=135  Identities=20%  Similarity=0.222  Sum_probs=91.4

Q ss_pred             eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-------ccccCCCCChhhH-----
Q 024315           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-------GLNRDLSFKAEDR-----  156 (269)
Q Consensus        89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-------~l~~~~g~~~~~~-----  156 (269)
                      ....+.+++++++|++++|+|+||||||||+++|++.+ .+.+|.+.++|.++..       .++..++|..++.     
T Consensus        25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~  103 (268)
T PRK10419         25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLE-SPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVN  103 (268)
T ss_pred             eeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccC
Confidence            55678899999999999999999999999999999987 4668999999987632       1122223222221     


Q ss_pred             -----HHHH----H---------HHHHHHHHHHhCCcc-e----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhH
Q 024315          157 -----VENI----R---------RIGEVAKLFADAGVI-C----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV  212 (269)
Q Consensus       157 -----~~~~----~---------~l~~~a~~~~~~g~~-~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~  212 (269)
                           .+.+    .         ........+...++. .    .....++++++| ..+++++.++++  +++|+|+..
T Consensus       104 ~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~l--llLDEPt~~  181 (268)
T PRK10419        104 PRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKL--LILDEAVSN  181 (268)
T ss_pred             CCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCE--EEEeCCCcc
Confidence                 0000    0         001122333344442 1    223345666666 699999999999  999999999


Q ss_pred             HHhcChhhHHHHHh
Q 024315          213 CEARDPKGLYKLAR  226 (269)
Q Consensus       213 l~~R~~k~l~~~~r  226 (269)
                      ++....+.+++.++
T Consensus       182 LD~~~~~~~~~~l~  195 (268)
T PRK10419        182 LDLVLQAGVIRLLK  195 (268)
T ss_pred             cCHHHHHHHHHHHH
Confidence            99887777665554

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.45  E-value=5.1e-13  Score=118.30  Aligned_cols=146  Identities=18%  Similarity=0.198  Sum_probs=98.1

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhc--cC--CccEEEECCeecCc------ccccCC
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH--WR--GKLTYILDGDNCRH------GLNRDL  149 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~--~~--~~g~i~l~g~~~~~------~l~~~~  149 (269)
                      .++.+.+......+++++++.+|++++|+|+||||||||+++|+|...  ++  .+|.+.++|.++..      ..+..+
T Consensus         7 ~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i   86 (250)
T PRK14245          7 RDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNV   86 (250)
T ss_pred             EEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhhe
Confidence            456666656667788999999999999999999999999999999631  22  47999999987642      112223


Q ss_pred             CCChhhH-------HHHHHH------------H-HHHHHHHHhCCcc--------eeeccCChHHHHH-HHHHHhCCCCC
Q 024315          150 SFKAEDR-------VENIRR------------I-GEVAKLFADAGVI--------CIACLISPYRKDR-DACRSMLPEGD  200 (269)
Q Consensus       150 g~~~~~~-------~~~~~~------------l-~~~a~~~~~~g~~--------~iv~~~~~~~~~r-~~ar~ll~~~~  200 (269)
                      +|.+++.       .+++..            . ......+...++.        ..+...++++++| ..+++++.+++
T Consensus        87 ~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~  166 (250)
T PRK14245         87 GMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPS  166 (250)
T ss_pred             EEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence            3332221       111110            0 0112233333431        1133456666666 68999999999


Q ss_pred             ccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          201 FIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       201 ~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      +  +++|||+..++....+.+.+.+++
T Consensus       167 l--llLDEPt~~LD~~~~~~l~~~l~~  191 (250)
T PRK14245        167 V--LLMDEPASALDPISTAKVEELIHE  191 (250)
T ss_pred             E--EEEeCCCccCCHHHHHHHHHHHHH
Confidence            9  999999999999988887766654

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.45  E-value=2.1e-13  Score=112.35  Aligned_cols=119  Identities=23%  Similarity=0.338  Sum_probs=86.4

Q ss_pred             eEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHHH
Q 024315           82 ILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIR  161 (269)
Q Consensus        82 ~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~  161 (269)
                      +.+.+.........++.+.+|++++|+|+||||||||+++|.+.+. +..|.+.+++.++..       .......   .
T Consensus         5 ~~~~~~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~-~~~G~i~~~~~~~~~-------~~~~~~~---~   73 (157)
T cd00267           5 LSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK-PTSGEILIDGKDIAK-------LPLEELR---R   73 (157)
T ss_pred             EEEEeCCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCEEccc-------CCHHHHH---h
Confidence            4444434456778899999999999999999999999999999885 668999999987642       1110000   0


Q ss_pred             HHHHHHHHHHhCCcceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315          162 RIGEVAKLFADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       162 ~l~~~a~~~~~~g~~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                         .         +..+.. .+.++++| ..+++++.++++  +.+|||+..++.+....+++.++
T Consensus        74 ---~---------i~~~~q-lS~G~~~r~~l~~~l~~~~~i--~ilDEp~~~lD~~~~~~l~~~l~  124 (157)
T cd00267          74 ---R---------IGYVPQ-LSGGQRQRVALARALLLNPDL--LLLDEPTSGLDPASRERLLELLR  124 (157)
T ss_pred             ---c---------eEEEee-CCHHHHHHHHHHHHHhcCCCE--EEEeCCCcCCCHHHHHHHHHHHH
Confidence               0         100111 44555555 688999999999  99999999999988887776655

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.45  E-value=5.3e-13  Score=119.24  Aligned_cols=145  Identities=16%  Similarity=0.137  Sum_probs=98.1

Q ss_pred             ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc----CCccEEEECCeecCc------ccccCCC
Q 024315           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH------GLNRDLS  150 (269)
Q Consensus        81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~----~~~g~i~l~g~~~~~------~l~~~~g  150 (269)
                      .....+......+..++.+.+|++++|+|+||||||||+++|+|.+.+    +.+|.|.++|.++..      .++..++
T Consensus        13 ~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~   92 (261)
T PRK14263         13 LDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIG   92 (261)
T ss_pred             eEEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceE
Confidence            345555556677889999999999999999999999999999999854    258999999987632      1122233


Q ss_pred             CChhhH-------HHHHHH----------H-HHHHHHHHhCCcce--------eeccCChHHHHH-HHHHHhCCCCCccE
Q 024315          151 FKAEDR-------VENIRR----------I-GEVAKLFADAGVIC--------IACLISPYRKDR-DACRSMLPEGDFIE  203 (269)
Q Consensus       151 ~~~~~~-------~~~~~~----------l-~~~a~~~~~~g~~~--------iv~~~~~~~~~r-~~ar~ll~~~~~~~  203 (269)
                      |.+++.       .+++..          . ..+...+...++..        .....++++++| ..+++++.++++  
T Consensus        93 ~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~l--  170 (261)
T PRK14263         93 MVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEV--  170 (261)
T ss_pred             EEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCE--
Confidence            332221       111110          0 11223334444321        112345666666 689999999999  


Q ss_pred             EEEeCChhHHHhcChhhHHHHHhc
Q 024315          204 VFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       204 i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      +++|+|+..++....+.+.+.+++
T Consensus       171 lllDEPtsgLD~~~~~~l~~~l~~  194 (261)
T PRK14263        171 LLLDEPCSALDPIATRRVEELMVE  194 (261)
T ss_pred             EEEeCCCccCCHHHHHHHHHHHHH
Confidence            999999999999988887766654

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.45  E-value=3.5e-13  Score=131.00  Aligned_cols=145  Identities=19%  Similarity=0.214  Sum_probs=100.4

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc-CCccEEEECCeecCcc-----cccCCCCCh
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW-RGKLTYILDGDNCRHG-----LNRDLSFKA  153 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~-~~~g~i~l~g~~~~~~-----l~~~~g~~~  153 (269)
                      .++++.+......+++++.+.+|++++|+|+||||||||+++|++.+++ +.+|.|.++|.++...     .+..++|.+
T Consensus         9 ~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~   88 (506)
T PRK13549          9 KNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIH   88 (506)
T ss_pred             eeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEE
Confidence            4667776666678999999999999999999999999999999998854 3689999999876321     112233322


Q ss_pred             hhH--------HHHHH--------------H-HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEE
Q 024315          154 EDR--------VENIR--------------R-IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVF  205 (269)
Q Consensus       154 ~~~--------~~~~~--------------~-l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~  205 (269)
                      |+.        .+.+.              . ...+...+...++..    .+...++++++| ..+++++.++++  ++
T Consensus        89 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~l--ll  166 (506)
T PRK13549         89 QELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARL--LI  166 (506)
T ss_pred             eccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCE--EE
Confidence            211        01000              0 011223344444422    234456777777 699999999999  99


Q ss_pred             EeCChhHHHhcChhhHHHHHh
Q 024315          206 MDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       206 ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      +|||+..++......+.+.++
T Consensus       167 LDEPt~~LD~~~~~~l~~~l~  187 (506)
T PRK13549        167 LDEPTASLTESETAVLLDIIR  187 (506)
T ss_pred             EeCCCCCCCHHHHHHHHHHHH
Confidence            999999999988877765543

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.45  E-value=3.3e-13  Score=131.38  Aligned_cols=144  Identities=18%  Similarity=0.232  Sum_probs=100.4

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-----cccCCCCChh
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAE  154 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-----l~~~~g~~~~  154 (269)
                      .++.+.+......++++|.+++|++++|+|+||||||||+++|+|.+ .+.+|.|.++|.++...     .+..++|.++
T Consensus        15 ~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q   93 (510)
T PRK15439         15 RSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIV-PPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQ   93 (510)
T ss_pred             EeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEECCCCCHHHHHhCCEEEEec
Confidence            56777776666788999999999999999999999999999999988 46689999999776421     0112233332


Q ss_pred             hH--------HHHHH-------H-HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHH
Q 024315          155 DR--------VENIR-------R-IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVC  213 (269)
Q Consensus       155 ~~--------~~~~~-------~-l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l  213 (269)
                      +.        .+.+.       . -..+...+...++..    .+...++++++| ..+++++.++++  +++|||+..+
T Consensus        94 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~l--llLDEPt~~L  171 (510)
T PRK15439         94 EPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRI--LILDEPTASL  171 (510)
T ss_pred             cCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCE--EEEECCCCCC
Confidence            21        11110       0 012223344444432    234456777777 699999999999  9999999999


Q ss_pred             HhcChhhHHHHHh
Q 024315          214 EARDPKGLYKLAR  226 (269)
Q Consensus       214 ~~R~~k~l~~~~r  226 (269)
                      +....+.+++.++
T Consensus       172 D~~~~~~l~~~l~  184 (510)
T PRK15439        172 TPAETERLFSRIR  184 (510)
T ss_pred             CHHHHHHHHHHHH
Confidence            9998888776654

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.45  E-value=3.1e-13  Score=127.67  Aligned_cols=137  Identities=18%  Similarity=0.182  Sum_probs=96.4

Q ss_pred             CceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc----c----ccCCCCChhhH--
Q 024315           87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----L----NRDLSFKAEDR--  156 (269)
Q Consensus        87 ~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~----l----~~~~g~~~~~~--  156 (269)
                      ..+...++++|++++|++++|+|+||||||||+++|++++ .+.+|.|.++|.++...    +    +..++|..|+.  
T Consensus        39 ~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~-~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l  117 (400)
T PRK10070         39 GLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLI-EPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFAL  117 (400)
T ss_pred             CCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCC-CCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcC
Confidence            3455688899999999999999999999999999999988 46789999999876421    1    12333333221  


Q ss_pred             ------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHH
Q 024315          157 ------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVC  213 (269)
Q Consensus       157 ------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l  213 (269)
                            .+++..            ..++...+...++..    .+..+++++++| ..+++++.++++  +++|||+..+
T Consensus       118 ~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~i--LLLDEPts~L  195 (400)
T PRK10070        118 MPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDI--LLMDEAFSAL  195 (400)
T ss_pred             CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCE--EEEECCCccC
Confidence                  111110            012223344445432    234457777777 689999999999  9999999999


Q ss_pred             HhcChhhHHHHHh
Q 024315          214 EARDPKGLYKLAR  226 (269)
Q Consensus       214 ~~R~~k~l~~~~r  226 (269)
                      +...++.+++.++
T Consensus       196 D~~~r~~l~~~L~  208 (400)
T PRK10070        196 DPLIRTEMQDELV  208 (400)
T ss_pred             CHHHHHHHHHHHH
Confidence            9998888776554

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.45  E-value=5e-13  Score=117.96  Aligned_cols=145  Identities=18%  Similarity=0.066  Sum_probs=94.8

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhc-cCCccEEEECCeecCc----cc-ccCCCCCh
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDNCRH----GL-NRDLSFKA  153 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~-~~~~g~i~l~g~~~~~----~l-~~~~g~~~  153 (269)
                      .++.+.+...+...++++.+++|++++|+|+||||||||+++|++.++ .+.+|.+.++|.++..    .. +..++|..
T Consensus         5 ~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~   84 (248)
T PRK09580          5 KDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAF   84 (248)
T ss_pred             EEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEe
Confidence            356666655567788999999999999999999999999999999852 4678999999976532    01 11233322


Q ss_pred             hhHH--------HH-------HH---------H--HHH-HHHHHHhCCcc-----eeec-cCChHHHHH-HHHHHhCCCC
Q 024315          154 EDRV--------EN-------IR---------R--IGE-VAKLFADAGVI-----CIAC-LISPYRKDR-DACRSMLPEG  199 (269)
Q Consensus       154 ~~~~--------~~-------~~---------~--l~~-~a~~~~~~g~~-----~iv~-~~~~~~~~r-~~ar~ll~~~  199 (269)
                      ++..        ..       +.         .  ... +...+...++.     ..+. ..++++++| ..+++++.++
T Consensus        85 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p  164 (248)
T PRK09580         85 QYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEP  164 (248)
T ss_pred             cCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCC
Confidence            2210        00       00         0  000 01111212221     1121 356666666 6999999999


Q ss_pred             CccEEEEeCChhHHHhcChhhHHHHHh
Q 024315          200 DFIEVFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       200 ~~~~i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      ++  +++|+|+..++....+.+.+.++
T Consensus       165 ~i--llLDEPt~~LD~~~~~~l~~~l~  189 (248)
T PRK09580        165 EL--CILDESDSGLDIDALKIVADGVN  189 (248)
T ss_pred             CE--EEEeCCCccCCHHHHHHHHHHHH
Confidence            99  99999999999998888776443

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.45  E-value=5.2e-13  Score=120.28  Aligned_cols=146  Identities=15%  Similarity=0.187  Sum_probs=99.6

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc----CCccEEEECCeecCc-----ccccCCC
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH-----GLNRDLS  150 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~----~~~g~i~l~g~~~~~-----~l~~~~g  150 (269)
                      .++.+.+......+++++++.+|++++|+|+||||||||+++|++.+++    +.+|.|.++|.++..     .++..++
T Consensus        25 ~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~  104 (276)
T PRK14271         25 VNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVG  104 (276)
T ss_pred             eeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheE
Confidence            5667776666677899999999999999999999999999999998854    358999999987632     1122233


Q ss_pred             CChhhH-------HHHHHH------------H-HHHHHHHHhCCcce--------eeccCChHHHHH-HHHHHhCCCCCc
Q 024315          151 FKAEDR-------VENIRR------------I-GEVAKLFADAGVIC--------IACLISPYRKDR-DACRSMLPEGDF  201 (269)
Q Consensus       151 ~~~~~~-------~~~~~~------------l-~~~a~~~~~~g~~~--------iv~~~~~~~~~r-~~ar~ll~~~~~  201 (269)
                      |.+++.       .+++..            . ......+...++..        .+...++++++| ..+++++.++++
T Consensus       105 ~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~l  184 (276)
T PRK14271        105 MLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEV  184 (276)
T ss_pred             EeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence            333221       111110            0 00112233334321        123456666666 689999999998


Q ss_pred             cEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          202 IEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       202 ~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                        +++|+|+..++....+.+++.+++
T Consensus       185 --llLDEPt~~LD~~~~~~l~~~L~~  208 (276)
T PRK14271        185 --LLLDEPTSALDPTTTEKIEEFIRS  208 (276)
T ss_pred             --EEEcCCcccCCHHHHHHHHHHHHH
Confidence              999999999999888887766553

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.45  E-value=4.4e-13  Score=118.62  Aligned_cols=146  Identities=16%  Similarity=0.179  Sum_probs=96.4

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc----CCccEEEECCeecCc------ccccCC
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH------GLNRDL  149 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~----~~~g~i~l~g~~~~~------~l~~~~  149 (269)
                      .++.+.+......+.+++++.+|++++|+|+||||||||+++|+|.+.+    +.+|.+.++|.++..      .++..+
T Consensus         7 ~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i   86 (250)
T PRK14262          7 ENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKV   86 (250)
T ss_pred             EeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhE
Confidence            4566665555567888999999999999999999999999999998753    257999999977531      112223


Q ss_pred             CCChhhH-------HHHHHH------------HH-HHHHHHHhCCcc--------eeeccCChHHHHH-HHHHHhCCCCC
Q 024315          150 SFKAEDR-------VENIRR------------IG-EVAKLFADAGVI--------CIACLISPYRKDR-DACRSMLPEGD  200 (269)
Q Consensus       150 g~~~~~~-------~~~~~~------------l~-~~a~~~~~~g~~--------~iv~~~~~~~~~r-~~ar~ll~~~~  200 (269)
                      +|.+++.       .+++..            .. .+...+...++.        ......++++++| ..+++++.+++
T Consensus        87 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~  166 (250)
T PRK14262         87 GMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPE  166 (250)
T ss_pred             EEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCC
Confidence            3322211       111110            00 011122222321        1123345666666 68999999999


Q ss_pred             ccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          201 FIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       201 ~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      +  +++|+|+..++....+.+.+.+++
T Consensus       167 l--lllDEP~~~LD~~~~~~l~~~l~~  191 (250)
T PRK14262        167 V--ILLDEPTSALDPIATQRIEKLLEE  191 (250)
T ss_pred             E--EEEeCCccccCHHHHHHHHHHHHH
Confidence            9  999999999999988777666543

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.45  E-value=7.1e-13  Score=118.16  Aligned_cols=144  Identities=23%  Similarity=0.202  Sum_probs=95.3

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhh
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAED  155 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~  155 (269)
                      .++.+.+......+.+++++++|++++|+|+||||||||+++|+|.+ .+.+|.+.++|.++..    .++..++|.+++
T Consensus         6 ~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~   84 (258)
T PRK13548          6 RNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGEL-SPDSGEVRLNGRPLADWSPAELARRRAVLPQH   84 (258)
T ss_pred             EeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCEEEECCEEcccCCHHHhhhheEEEccC
Confidence            45666665556788899999999999999999999999999999987 4668999999986532    111112222211


Q ss_pred             --------HHHHHHH-----------H-HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhC------CCCCccEE
Q 024315          156 --------RVENIRR-----------I-GEVAKLFADAGVIC----IACLISPYRKDR-DACRSML------PEGDFIEV  204 (269)
Q Consensus       156 --------~~~~~~~-----------l-~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll------~~~~~~~i  204 (269)
                              ..+++..           . ......+...++..    .+...++++++| ..+++++      .++++  +
T Consensus        85 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~l--l  162 (258)
T PRK13548         85 SSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRW--L  162 (258)
T ss_pred             CcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCE--E
Confidence                    0111100           0 01122333334422    233456666666 6888888      47788  9


Q ss_pred             EEeCChhHHHhcChhhHHHHHh
Q 024315          205 FMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       205 ~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      ++|+|+..++....+.+.+.++
T Consensus       163 lLDEPt~~LD~~~~~~l~~~l~  184 (258)
T PRK13548        163 LLDEPTSALDLAHQHHVLRLAR  184 (258)
T ss_pred             EEeCCcccCCHHHHHHHHHHHH
Confidence            9999999999988777665544

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.45  E-value=4.3e-13  Score=130.24  Aligned_cols=144  Identities=19%  Similarity=0.256  Sum_probs=99.2

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-----cccCCCCChh
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAE  154 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-----l~~~~g~~~~  154 (269)
                      .++++.+......+++++.+.+|++++|+|+||||||||+++|++.++ +.+|.|.++|.++...     .+..++|.+|
T Consensus         8 ~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q   86 (501)
T PRK10762          8 KGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT-RDAGSILYLGKEVTFNGPKSSQEAGIGIIHQ   86 (501)
T ss_pred             eeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEECCCCCHHHHHhCCEEEEEc
Confidence            466666666667889999999999999999999999999999999884 6689999999775310     1122233222


Q ss_pred             hH--------HHHH---------------HH-HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEE
Q 024315          155 DR--------VENI---------------RR-IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVF  205 (269)
Q Consensus       155 ~~--------~~~~---------------~~-l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~  205 (269)
                      +.        .+.+               .. ...+...+...++..    .+...|+++++| ..+++++.++++  ++
T Consensus        87 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l--ll  164 (501)
T PRK10762         87 ELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKV--II  164 (501)
T ss_pred             chhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCE--EE
Confidence            11        0100               00 011223344444432    234456677776 689999999999  99


Q ss_pred             EeCChhHHHhcChhhHHHHHh
Q 024315          206 MDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       206 ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      +|||+..++....+.+++.++
T Consensus       165 LDEPt~~LD~~~~~~l~~~l~  185 (501)
T PRK10762        165 MDEPTDALTDTETESLFRVIR  185 (501)
T ss_pred             EeCCcCCCCHHHHHHHHHHHH
Confidence            999999999988888765544

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.45  E-value=4.2e-13  Score=131.59  Aligned_cols=143  Identities=19%  Similarity=0.152  Sum_probs=97.3

Q ss_pred             ceEEeeCc-eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhh
Q 024315           81 NILWHKNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAED  155 (269)
Q Consensus        81 ~~~~~~~~-v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~  155 (269)
                      |+++.+.. ....++.++.+++|+.++|+|+||||||||++.|+|.+ ++.+|.|.++|.++..    .+++.+++.+|+
T Consensus       327 ~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~  405 (547)
T PRK10522        327 NVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLY-QPQSGEILLDGKPVTAEQPEDYRKLFSAVFTD  405 (547)
T ss_pred             EEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEECCCCCHHHHhhheEEEecC
Confidence            44444422 22456779999999999999999999999999999988 5679999999998763    344445555554


Q ss_pred             HHHH---HH-----H-HHHHHHHHHhCCccee---------eccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhc
Q 024315          156 RVEN---IR-----R-IGEVAKLFADAGVICI---------ACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEAR  216 (269)
Q Consensus       156 ~~~~---~~-----~-l~~~a~~~~~~g~~~i---------v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R  216 (269)
                      ..-.   ++     . -.+........+....         ....++++++| ..+|+++.++++  +.+|||++.++..
T Consensus       406 ~~lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~i--lilDE~ts~LD~~  483 (547)
T PRK10522        406 FHLFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDI--LLLDEWAADQDPH  483 (547)
T ss_pred             hhHHHHhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCE--EEEECCCCCCCHH
Confidence            3100   00     0 0011112222222111         23457777777 799999999999  9999999999998


Q ss_pred             ChhhHHHHHh
Q 024315          217 DPKGLYKLAR  226 (269)
Q Consensus       217 ~~k~l~~~~r  226 (269)
                      ..+.+++...
T Consensus       484 ~~~~i~~~l~  493 (547)
T PRK10522        484 FRREFYQVLL  493 (547)
T ss_pred             HHHHHHHHHH
Confidence            8887665543

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.45  E-value=3e-13  Score=133.61  Aligned_cols=133  Identities=18%  Similarity=0.254  Sum_probs=92.8

Q ss_pred             eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhH----------
Q 024315           91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDR----------  156 (269)
Q Consensus        91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~----------  156 (269)
                      ..++.++++++|+.++|+|+||||||||++.|.|.+ +|.+|.+.++|.++..    .+++.++|.+|+.          
T Consensus       350 iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~-~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~N  428 (588)
T PRK13657        350 GVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVF-DPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDN  428 (588)
T ss_pred             eecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCc-CCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHH
Confidence            356678999999999999999999999999999988 5678999999987653    2233333333321          


Q ss_pred             -------------HHHHHHHHHHHHHHH--hCCccee----eccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhc
Q 024315          157 -------------VENIRRIGEVAKLFA--DAGVICI----ACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEAR  216 (269)
Q Consensus       157 -------------~~~~~~l~~~a~~~~--~~g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R  216 (269)
                                   ....+... ....+.  ..|+...    ....++++++| ..+|+++.++++  +.+|||+..++..
T Consensus       429 i~~~~~~~~d~~i~~al~~~~-l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~i--liLDEpts~LD~~  505 (588)
T PRK13657        429 IRVGRPDATDEEMRAAAERAQ-AHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPI--LILDEATSALDVE  505 (588)
T ss_pred             HhcCCCCCCHHHHHHHHHHhC-HHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCE--EEEeCCccCCCHH
Confidence                         11111110 111111  1233222    23457777777 799999999999  9999999999999


Q ss_pred             ChhhHHHHHhc
Q 024315          217 DPKGLYKLARE  227 (269)
Q Consensus       217 ~~k~l~~~~r~  227 (269)
                      ..+.+++.+++
T Consensus       506 t~~~i~~~l~~  516 (588)
T PRK13657        506 TEAKVKAALDE  516 (588)
T ss_pred             HHHHHHHHHHH
Confidence            99888876654

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.45  E-value=4.9e-13  Score=120.08  Aligned_cols=146  Identities=21%  Similarity=0.188  Sum_probs=96.7

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhc--c--CCccEEEECCeecCc------ccccCC
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH--W--RGKLTYILDGDNCRH------GLNRDL  149 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~--~--~~~g~i~l~g~~~~~------~l~~~~  149 (269)
                      .++.+.+......++.++++.+|++++|+|+||||||||+++|+|.+.  +  +..|.|.++|.++..      .++..+
T Consensus        28 ~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i  107 (271)
T PRK14238         28 QNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNV  107 (271)
T ss_pred             eeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhE
Confidence            466666655556788899999999999999999999999999999875  2  468999999987631      112223


Q ss_pred             CCChhh-------HHHHHHH------------HHH-HHHHHHhCC----c----ceeeccCChHHHHH-HHHHHhCCCCC
Q 024315          150 SFKAED-------RVENIRR------------IGE-VAKLFADAG----V----ICIACLISPYRKDR-DACRSMLPEGD  200 (269)
Q Consensus       150 g~~~~~-------~~~~~~~------------l~~-~a~~~~~~g----~----~~iv~~~~~~~~~r-~~ar~ll~~~~  200 (269)
                      +|.+++       ..+++..            ..+ +...+...+    +    .......++++++| ..+++++.+++
T Consensus       108 ~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~  187 (271)
T PRK14238        108 GMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPD  187 (271)
T ss_pred             EEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCC
Confidence            332222       1111110            000 111111111    1    11223346666666 68999999999


Q ss_pred             ccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          201 FIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       201 ~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      +  +++|+|+..++....+.+++.+++
T Consensus       188 l--llLDEPt~~LD~~~~~~l~~~l~~  212 (271)
T PRK14238        188 V--ILMDEPTSALDPISTLKVEELVQE  212 (271)
T ss_pred             E--EEEeCCCCcCCHHHHHHHHHHHHH
Confidence            8  999999999999998887766543

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.45  E-value=3e-13  Score=118.72  Aligned_cols=136  Identities=20%  Similarity=0.242  Sum_probs=90.0

Q ss_pred             eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhH-------H
Q 024315           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDR-------V  157 (269)
Q Consensus        89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~-------~  157 (269)
                      ....+.+++++.+|++++|+|+||||||||++.|+|.++ +.+|.|.++|.++..    .++..++|.+++.       .
T Consensus        15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~   93 (237)
T cd03252          15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV-PENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIR   93 (237)
T ss_pred             ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-CCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHH
Confidence            345678899999999999999999999999999999884 668999999976531    1112223222221       0


Q ss_pred             HHHH---------HHHHH------HHHHHhC--Ccc----eeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHh
Q 024315          158 ENIR---------RIGEV------AKLFADA--GVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEA  215 (269)
Q Consensus       158 ~~~~---------~l~~~------a~~~~~~--g~~----~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~  215 (269)
                      +++.         .+.+.      ...+...  +..    ..+...++++++| ..+++++.++++  +++|+|+..++.
T Consensus        94 ~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l--lllDEP~~~LD~  171 (237)
T cd03252          94 DNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI--LIFDEATSALDY  171 (237)
T ss_pred             HHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE--EEEeCCcccCCH
Confidence            1100         00000      0011111  111    1223456666666 689999999998  999999999999


Q ss_pred             cChhhHHHHHhc
Q 024315          216 RDPKGLYKLARE  227 (269)
Q Consensus       216 R~~k~l~~~~r~  227 (269)
                      ...+.+++.+++
T Consensus       172 ~~~~~l~~~l~~  183 (237)
T cd03252         172 ESEHAIMRNMHD  183 (237)
T ss_pred             HHHHHHHHHHHH
Confidence            998887776654

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.44  E-value=3.2e-13  Score=128.74  Aligned_cols=130  Identities=24%  Similarity=0.275  Sum_probs=87.0

Q ss_pred             eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCC----------------
Q 024315           91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLS----------------  150 (269)
Q Consensus        91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g----------------  150 (269)
                      +.++.+|++.+||.++|+|+|||||||+++.|.|.+ ++.+|.+.++|.++.+    .++..+.                
T Consensus       353 ~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~-~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~N  431 (573)
T COG4987         353 ALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAW-DPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDN  431 (573)
T ss_pred             hhhccceeecCCCeEEEECCCCCCHHHHHHHHHhcc-CCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHH
Confidence            446679999999999999999999999999999988 5779999999987762    0111111                


Q ss_pred             -------CChhhHHHHHHHHHHHHHHHHhC--Ccc----eeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhc
Q 024315          151 -------FKAEDRVENIRRIGEVAKLFADA--GVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEAR  216 (269)
Q Consensus       151 -------~~~~~~~~~~~~l~~~a~~~~~~--g~~----~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R  216 (269)
                             -++++..+..++++ ..+.....  |+.    +-....|+++++| ..+|.++.+.++  +.+|||++.+|+.
T Consensus       432 L~lA~~~AsDEel~~aL~qvg-L~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl--~lLDEPTegLD~~  508 (573)
T COG4987         432 LRLANPDASDEELWAALQQVG-LEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPL--WLLDEPTEGLDPI  508 (573)
T ss_pred             HhhcCCCCCHHHHHHHHHHcC-HHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCe--EEecCCcccCChh
Confidence                   11122222111111 11111111  221    1122346677766 799999999888  8999999999998


Q ss_pred             ChhhHHHH
Q 024315          217 DPKGLYKL  224 (269)
Q Consensus       217 ~~k~l~~~  224 (269)
                      ....+.+.
T Consensus       509 TE~~vL~l  516 (573)
T COG4987         509 TERQVLAL  516 (573)
T ss_pred             hHHHHHHH
Confidence            88775544

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.44  E-value=2.8e-13  Score=122.71  Aligned_cols=133  Identities=16%  Similarity=0.101  Sum_probs=91.8

Q ss_pred             eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--------ccccCCCCChhhH------
Q 024315           91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--------GLNRDLSFKAEDR------  156 (269)
Q Consensus        91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--------~l~~~~g~~~~~~------  156 (269)
                      ..+.+++.+.+|++++|+|+||||||||+++|+|.+ .+.+|.|.++|.++..        .++..++|..++.      
T Consensus        21 ~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~   99 (288)
T PRK13643         21 ALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLL-QPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE   99 (288)
T ss_pred             ceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCC-CCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhccc
Confidence            567889999999999999999999999999999988 4678999999987631        1222334333321      


Q ss_pred             ---HHHHHH------------HHHHHHHHHhCCcc-----eeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHh
Q 024315          157 ---VENIRR------------IGEVAKLFADAGVI-----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEA  215 (269)
Q Consensus       157 ---~~~~~~------------l~~~a~~~~~~g~~-----~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~  215 (269)
                         .+.+..            ...+...+...++.     ..+..+++++++| ..+++++.++++  +++|+|+..++.
T Consensus       100 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~i--llLDEPt~gLD~  177 (288)
T PRK13643        100 ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEV--LVLDEPTAGLDP  177 (288)
T ss_pred             chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCE--EEEECCccCCCH
Confidence               011100            01122333333442     1223456666666 689999999999  999999999998


Q ss_pred             cChhhHHHHHh
Q 024315          216 RDPKGLYKLAR  226 (269)
Q Consensus       216 R~~k~l~~~~r  226 (269)
                      ...+.+.+.++
T Consensus       178 ~~~~~l~~~l~  188 (288)
T PRK13643        178 KARIEMMQLFE  188 (288)
T ss_pred             HHHHHHHHHHH
Confidence            88777665543

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.44  E-value=2.6e-13  Score=133.38  Aligned_cols=133  Identities=21%  Similarity=0.296  Sum_probs=92.2

Q ss_pred             ccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhH-------HHHH
Q 024315           92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDR-------VENI  160 (269)
Q Consensus        92 ~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~-------~~~~  160 (269)
                      .++.++.+++|+.++|+|+||||||||++.|.|.+ .+.+|.|.++|.++.+    .++..++|.+|+.       ++++
T Consensus       348 l~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~-~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni  426 (571)
T TIGR02203       348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFY-EPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNI  426 (571)
T ss_pred             ccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhcc-CCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHH
Confidence            45678999999999999999999999999999988 5778999999987642    2222233333321       1111


Q ss_pred             H-------------HHHHH---HHHHHh--CCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcC
Q 024315          161 R-------------RIGEV---AKLFAD--AGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD  217 (269)
Q Consensus       161 ~-------------~l~~~---a~~~~~--~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~  217 (269)
                      .             ...+.   ...+..  .|+..    -....++++++| ..+|+++.++++  +.+|||++.+|...
T Consensus       427 ~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~i--llLDEpts~LD~~~  504 (571)
T TIGR02203       427 AYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPI--LILDEATSALDNES  504 (571)
T ss_pred             hcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCE--EEEeCccccCCHHH
Confidence            1             10010   011111  12221    123457888887 799999999999  99999999999999


Q ss_pred             hhhHHHHHhc
Q 024315          218 PKGLYKLARE  227 (269)
Q Consensus       218 ~k~l~~~~r~  227 (269)
                      .+.+++.+++
T Consensus       505 ~~~i~~~L~~  514 (571)
T TIGR02203       505 ERLVQAALER  514 (571)
T ss_pred             HHHHHHHHHH
Confidence            9988776654

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.44  E-value=9e-13  Score=116.76  Aligned_cols=146  Identities=17%  Similarity=0.169  Sum_probs=96.9

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhc-cC---CccEEEECCeecCc------ccccCC
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WR---GKLTYILDGDNCRH------GLNRDL  149 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~-~~---~~g~i~l~g~~~~~------~l~~~~  149 (269)
                      .++++.+......+.+++++.+|++++|+|+||||||||+++|++.++ .+   .+|.|.++|.++..      .++..+
T Consensus         9 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i   88 (252)
T PRK14255          9 SDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQV   88 (252)
T ss_pred             EeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeE
Confidence            466666666667888999999999999999999999999999999764 23   37999999987631      112223


Q ss_pred             CCChhh-------HHHHHHH------------H-HHHHHHHHhCCc--------ceeeccCChHHHHH-HHHHHhCCCCC
Q 024315          150 SFKAED-------RVENIRR------------I-GEVAKLFADAGV--------ICIACLISPYRKDR-DACRSMLPEGD  200 (269)
Q Consensus       150 g~~~~~-------~~~~~~~------------l-~~~a~~~~~~g~--------~~iv~~~~~~~~~r-~~ar~ll~~~~  200 (269)
                      +|.+++       ..+.+..            . ......+...+.        ...+...++++++| ..+++++.+++
T Consensus        89 ~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~  168 (252)
T PRK14255         89 GMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPD  168 (252)
T ss_pred             EEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCC
Confidence            333322       1111110            0 001111222221        11223346666666 68999999999


Q ss_pred             ccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          201 FIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       201 ~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      +  +++|+|+..++....+.+.+.+++
T Consensus       169 l--lllDEPt~~LD~~~~~~l~~~l~~  193 (252)
T PRK14255        169 V--ILLDEPTSALDPISSTQIENMLLE  193 (252)
T ss_pred             E--EEEcCCCccCCHHHHHHHHHHHHH
Confidence            8  999999999999988887766543

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.44  E-value=7e-13  Score=117.38  Aligned_cols=146  Identities=20%  Similarity=0.242  Sum_probs=96.5

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccC----CccEEEECCeecCc------ccccCC
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR----GKLTYILDGDNCRH------GLNRDL  149 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~----~~g~i~l~g~~~~~------~l~~~~  149 (269)
                      .++.+.+......+++++.+++|++++|+|+||||||||+++|+|.+.+.    .+|.|.++|.++..      ..+..+
T Consensus         8 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i   87 (252)
T PRK14272          8 QDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRV   87 (252)
T ss_pred             eeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhcee
Confidence            45666665566788999999999999999999999999999999988532    27999999987631      112223


Q ss_pred             CCChhhH--------HHHHHH------------HHHHH-HHHHhCCc--------ceeeccCChHHHHH-HHHHHhCCCC
Q 024315          150 SFKAEDR--------VENIRR------------IGEVA-KLFADAGV--------ICIACLISPYRKDR-DACRSMLPEG  199 (269)
Q Consensus       150 g~~~~~~--------~~~~~~------------l~~~a-~~~~~~g~--------~~iv~~~~~~~~~r-~~ar~ll~~~  199 (269)
                      +|.+++.        .+++..            ..+.+ ..+...+.        ...+...++++++| ..+++++.++
T Consensus        88 ~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p  167 (252)
T PRK14272         88 GMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEP  167 (252)
T ss_pred             EEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence            3222211        111110            00001 11111211        11233456666666 6899999999


Q ss_pred             CccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          200 DFIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       200 ~~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      ++  +++|+|+..++....+.+.+.+++
T Consensus       168 ~l--lllDEP~~~LD~~~~~~l~~~l~~  193 (252)
T PRK14272        168 EI--LLMDEPTSALDPASTARIEDLMTD  193 (252)
T ss_pred             CE--EEEeCCCccCCHHHHHHHHHHHHH
Confidence            99  999999999999888887766554

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.44  E-value=5.9e-13  Score=116.60  Aligned_cols=142  Identities=21%  Similarity=0.294  Sum_probs=93.2

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc--cccCCCCChhh--
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--LNRDLSFKAED--  155 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~--l~~~~g~~~~~--  155 (269)
                      .++++.+....  ..+++.+.+|++++|+|+||||||||++.|+|.+ .+.+|.+.++|.++...  .+..++|.+++  
T Consensus         5 ~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~   81 (232)
T PRK10771          5 TDITWLYHHLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFL-TPASGSLTLNGQDHTTTPPSRRPVSMLFQENN   81 (232)
T ss_pred             EEEEEEECCcc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCeecCcCChhhccEEEEecccc
Confidence            35555554332  3689999999999999999999999999999988 46689999999875421  01112221111  


Q ss_pred             ------HHHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhH
Q 024315          156 ------RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV  212 (269)
Q Consensus       156 ------~~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~  212 (269)
                            ..+++..            -..+...+...++..    .+...++++++| ..+++++.++++  +++|+|+..
T Consensus        82 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l--llLDEP~~g  159 (232)
T PRK10771         82 LFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPI--LLLDEPFSA  159 (232)
T ss_pred             cccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCE--EEEeCCccc
Confidence                  0111110            001222333334322    233456666666 688999999999  999999999


Q ss_pred             HHhcChhhHHHHHh
Q 024315          213 CEARDPKGLYKLAR  226 (269)
Q Consensus       213 l~~R~~k~l~~~~r  226 (269)
                      ++....+.+.+.++
T Consensus       160 LD~~~~~~~~~~l~  173 (232)
T PRK10771        160 LDPALRQEMLTLVS  173 (232)
T ss_pred             CCHHHHHHHHHHHH
Confidence            99998887776554

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.44  E-value=2.4e-13  Score=116.95  Aligned_cols=141  Identities=21%  Similarity=0.159  Sum_probs=94.9

Q ss_pred             ceEEeeCc--eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChh
Q 024315           81 NILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAE  154 (269)
Q Consensus        81 ~~~~~~~~--v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~  154 (269)
                      ++.+.+..  ....++.++.+++|++++|+|+||||||||+++|++.+ .+.+|.+.++|.++..    ..+..++|.++
T Consensus        11 ~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q   89 (207)
T cd03369          11 NLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFL-EAEEGKIEIDGIDISTIPLEDLRSSLTIIPQ   89 (207)
T ss_pred             EEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhccc-CCCCCeEEECCEEhHHCCHHHHHhhEEEEec
Confidence            44444432  24678889999999999999999999999999999987 4678999999987632    11222333333


Q ss_pred             hH-------HHHHHHH-----HHHHHHHHhCCcceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhH
Q 024315          155 DR-------VENIRRI-----GEVAKLFADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGL  221 (269)
Q Consensus       155 ~~-------~~~~~~l-----~~~a~~~~~~g~~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l  221 (269)
                      +.       .+++...     .++...+.   ........++++++| ..+++++.++++  +++|+|+..++....+.+
T Consensus        90 ~~~~~~~tv~~~l~~~~~~~~~~~~~~l~---~~~~~~~LS~G~~qrv~laral~~~p~l--lllDEP~~~LD~~~~~~l  164 (207)
T cd03369          90 DPTLFSGTIRSNLDPFDEYSDEEIYGALR---VSEGGLNLSQGQRQLLCLARALLKRPRV--LVLDEATASIDYATDALI  164 (207)
T ss_pred             CCcccCccHHHHhcccCCCCHHHHHHHhh---ccCCCCcCCHHHHHHHHHHHHHhhCCCE--EEEeCCcccCCHHHHHHH
Confidence            21       1111100     01111111   112233456666666 689999999999  999999999999998888


Q ss_pred             HHHHhc
Q 024315          222 YKLARE  227 (269)
Q Consensus       222 ~~~~r~  227 (269)
                      ++.+++
T Consensus       165 ~~~l~~  170 (207)
T cd03369         165 QKTIRE  170 (207)
T ss_pred             HHHHHH
Confidence            777664

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.44  E-value=8.1e-13  Score=117.51  Aligned_cols=144  Identities=16%  Similarity=0.112  Sum_probs=92.7

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCCh---hhH
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKA---EDR  156 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~---~~~  156 (269)
                      .++.+.+......+.+++.+++|++++|+|+||||||||+++|++.+ .+.+|.|.+++.....-+..+..+..   ...
T Consensus         8 ~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~-~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~   86 (251)
T PRK09544          8 ENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLV-APDEGVIKRNGKLRIGYVPQKLYLDTTLPLTV   86 (251)
T ss_pred             eceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCccCEEEeccccccccccChhH
Confidence            45666655555678889999999999999999999999999999988 46689999887321100111101100   000


Q ss_pred             HHHHHH-----HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315          157 VENIRR-----IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       157 ~~~~~~-----l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      .+....     ...+...+...++..    .+...++++++| ..+++++.++++  +++|+|+..++....+.+.+.++
T Consensus        87 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~l--llLDEPt~~LD~~~~~~l~~~L~  164 (251)
T PRK09544         87 NRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQL--LVLDEPTQGVDVNGQVALYDLID  164 (251)
T ss_pred             HHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCCcCCCHHHHHHHHHHHH
Confidence            111100     011222333334322    233456666666 689999999999  99999999999988887766554

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.44  E-value=3e-13  Score=122.44  Aligned_cols=144  Identities=16%  Similarity=0.161  Sum_probs=95.5

Q ss_pred             cceEEeeCc-----eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc---------cc
Q 024315           80 TNILWHKNS-----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH---------GL  145 (269)
Q Consensus        80 ~~~~~~~~~-----v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~---------~l  145 (269)
                      .++.+.+..     +...+.+++.+++|++++|+|+||||||||+++|++.++ +.+|.+.++|.++..         .+
T Consensus        10 ~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~~   88 (289)
T PRK13645         10 DNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII-SETGQTIVGDYAIPANLKKIKEVKRL   88 (289)
T ss_pred             EEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCEEccccccccccHHHH
Confidence            345555533     235678899999999999999999999999999999884 668999999976531         12


Q ss_pred             ccCCCCChhhH---------HHHHHH-----------H-HHHHHHHHhCCcc-e----eeccCChHHHHH-HHHHHhCCC
Q 024315          146 NRDLSFKAEDR---------VENIRR-----------I-GEVAKLFADAGVI-C----IACLISPYRKDR-DACRSMLPE  198 (269)
Q Consensus       146 ~~~~g~~~~~~---------~~~~~~-----------l-~~~a~~~~~~g~~-~----iv~~~~~~~~~r-~~ar~ll~~  198 (269)
                      +..++|.+++.         .+++..           . ..+..++...++. .    .+...++++++| ..+++++.+
T Consensus        89 ~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~  168 (289)
T PRK13645         89 RKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMD  168 (289)
T ss_pred             hccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhC
Confidence            22334433321         111110           0 0111223333331 1    123456666666 689999999


Q ss_pred             CCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315          199 GDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       199 ~~~~~i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      +++  +++|+|+..++....+.+++.++
T Consensus       169 p~l--LlLDEPt~~LD~~~~~~l~~~l~  194 (289)
T PRK13645        169 GNT--LVLDEPTGGLDPKGEEDFINLFE  194 (289)
T ss_pred             CCE--EEEeCCcccCCHHHHHHHHHHHH
Confidence            999  99999999999998887765543

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.44  E-value=4.3e-13  Score=123.86  Aligned_cols=137  Identities=19%  Similarity=0.172  Sum_probs=94.4

Q ss_pred             ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccC--CccEEEECCeecCc----c---cc-cCCCCChhhHH
Q 024315           88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR--GKLTYILDGDNCRH----G---LN-RDLSFKAEDRV  157 (269)
Q Consensus        88 ~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~--~~g~i~l~g~~~~~----~---l~-~~~g~~~~~~~  157 (269)
                      .+...+++||++++|++++|+|+||||||||+++|++++++.  .+|.|.++|.++..    .   ++ +.++|..|+..
T Consensus        28 ~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~  107 (330)
T PRK09473         28 DVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPM  107 (330)
T ss_pred             CEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCch
Confidence            366788999999999999999999999999999999988532  28999999988642    1   11 23444433310


Q ss_pred             ----------H----HHHH---------HHHHHHHHHhCCcce-------eeccCChHHHHH-HHHHHhCCCCCccEEEE
Q 024315          158 ----------E----NIRR---------IGEVAKLFADAGVIC-------IACLISPYRKDR-DACRSMLPEGDFIEVFM  206 (269)
Q Consensus       158 ----------~----~~~~---------l~~~a~~~~~~g~~~-------iv~~~~~~~~~r-~~ar~ll~~~~~~~i~l  206 (269)
                                +    .+..         .......+...++..       ....+++++++| .++++++.++++  +++
T Consensus       108 ~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~l--lil  185 (330)
T PRK09473        108 TSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKL--LIA  185 (330)
T ss_pred             hhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCE--EEE
Confidence                      1    0000         011222333334321       233456777777 699999999999  999


Q ss_pred             eCChhHHHhcChhhHHHHHh
Q 024315          207 DVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       207 d~p~~~l~~R~~k~l~~~~r  226 (269)
                      |||+..++...++.+.+.++
T Consensus       186 DEPts~LD~~~~~~i~~lL~  205 (330)
T PRK09473        186 DEPTTALDVTVQAQIMTLLN  205 (330)
T ss_pred             eCCCccCCHHHHHHHHHHHH
Confidence            99999999988887665443

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.44  E-value=6.2e-13  Score=121.46  Aligned_cols=146  Identities=19%  Similarity=0.156  Sum_probs=97.4

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc----CCccEEEECCeecCc------ccccCC
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH------GLNRDL  149 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~----~~~g~i~l~g~~~~~------~l~~~~  149 (269)
                      .++.+.+......+.+++++.+|++++|+|+||||||||+++|+|.+.+    +.+|.|.++|.++..      .++..+
T Consensus        49 ~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i  128 (305)
T PRK14264         49 EDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRV  128 (305)
T ss_pred             EEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhce
Confidence            4556555555677888999999999999999999999999999998752    468999999987642      112233


Q ss_pred             CCChhhHH-------HHHHH-------------------------HHHHHHHHHhCCc--------ceeeccCChHHHHH
Q 024315          150 SFKAEDRV-------ENIRR-------------------------IGEVAKLFADAGV--------ICIACLISPYRKDR  189 (269)
Q Consensus       150 g~~~~~~~-------~~~~~-------------------------l~~~a~~~~~~g~--------~~iv~~~~~~~~~r  189 (269)
                      +|.+++..       +++..                         ...+...+...++        ......+++++++|
T Consensus       129 ~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr  208 (305)
T PRK14264        129 GMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQR  208 (305)
T ss_pred             EEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHH
Confidence            43333210       11100                         0001111222222        11123356666666


Q ss_pred             -HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          190 -DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       190 -~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                       ..+++++.++++  +++|+|+..++....+.+.+.++.
T Consensus       209 v~LAraL~~~p~l--LLLDEPtsgLD~~~~~~l~~~L~~  245 (305)
T PRK14264        209 LCIARCLAVDPEV--ILMDEPASALDPIATSKIEDLIEE  245 (305)
T ss_pred             HHHHHHHhcCCCE--EEEeCCcccCCHHHHHHHHHHHHH
Confidence             689999999999  999999999999888877766553

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.44  E-value=1e-12  Score=116.26  Aligned_cols=146  Identities=17%  Similarity=0.154  Sum_probs=96.2

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhc-cC---CccEEEECCeecCc------ccccCC
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WR---GKLTYILDGDNCRH------GLNRDL  149 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~-~~---~~g~i~l~g~~~~~------~l~~~~  149 (269)
                      .++.+.+......+.+++.+++|++++|+|+||||||||+++|+|.+. .+   .+|.|.++|.++..      .++..+
T Consensus         9 ~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i   88 (252)
T PRK14239          9 SDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEI   88 (252)
T ss_pred             EeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcE
Confidence            456666555556788899999999999999999999999999999753 23   37999999987631      112223


Q ss_pred             CCChhh-------HHHHHHH------------H-HHHHHHHHhCCc--------ceeeccCChHHHHH-HHHHHhCCCCC
Q 024315          150 SFKAED-------RVENIRR------------I-GEVAKLFADAGV--------ICIACLISPYRKDR-DACRSMLPEGD  200 (269)
Q Consensus       150 g~~~~~-------~~~~~~~------------l-~~~a~~~~~~g~--------~~iv~~~~~~~~~r-~~ar~ll~~~~  200 (269)
                      +|.+++       ..+++..            . ......+...++        ...+...++++++| ..+++++.+++
T Consensus        89 ~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~  168 (252)
T PRK14239         89 GMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPK  168 (252)
T ss_pred             EEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCC
Confidence            333221       1111110            0 011112222222        11223346666666 68899999999


Q ss_pred             ccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          201 FIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       201 ~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      +  +++|+|+..++....+.+++.+++
T Consensus       169 l--lllDEPt~~LD~~~~~~l~~~l~~  193 (252)
T PRK14239        169 I--ILLDEPTSALDPISAGKIEETLLG  193 (252)
T ss_pred             E--EEEcCCccccCHHHHHHHHHHHHH
Confidence            8  999999999999988887766654

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.44  E-value=5.5e-13  Score=131.06  Aligned_cols=131  Identities=17%  Similarity=0.147  Sum_probs=93.1

Q ss_pred             eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhHH---HHHH--
Q 024315           91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDRV---ENIR--  161 (269)
Q Consensus        91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~~---~~~~--  161 (269)
                      ..++.++++++|++++|+|+||||||||++.|+|.+ ++.+|.|.++|.++..    .++..+++..|+..   ..++  
T Consensus       357 ~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~-~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n  435 (555)
T TIGR01194       357 ALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLY-IPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPD  435 (555)
T ss_pred             eeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhcc
Confidence            345678999999999999999999999999999988 5779999999998863    23344444444321   0000  


Q ss_pred             -----HHHHHHHHHHhCCccee----------eccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHH
Q 024315          162 -----RIGEVAKLFADAGVICI----------ACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL  224 (269)
Q Consensus       162 -----~l~~~a~~~~~~g~~~i----------v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~  224 (269)
                           .-.++...+...++...          ....++++++| ..+|+++.++++  +.+|||+..+|....+.+++.
T Consensus       436 ~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~i--lilDE~ts~LD~~~~~~i~~~  512 (555)
T TIGR01194       436 EGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPI--LLFDEWAADQDPAFKRFFYEE  512 (555)
T ss_pred             cccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCE--EEEeCCccCCCHHHHHHHHHH
Confidence                 00111222333333221          13457777777 799999999999  999999999999998887654

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.44  E-value=7.3e-13  Score=117.14  Aligned_cols=146  Identities=21%  Similarity=0.203  Sum_probs=96.7

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc----CCccEEEECCeecCc-----ccccCCC
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH-----GLNRDLS  150 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~----~~~g~i~l~g~~~~~-----~l~~~~g  150 (269)
                      .++.+.+......+.+++.+++|++++|+|+||||||||+++|++.+.+    +.+|.+.++|.++..     .++..++
T Consensus         7 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~   86 (249)
T PRK14253          7 ENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVG   86 (249)
T ss_pred             eccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhhee
Confidence            4566666566678999999999999999999999999999999998753    247999999976631     1122233


Q ss_pred             CChhhH-------HHHHHH------------H-HHHHHHHHhCCcc--------eeeccCChHHHHH-HHHHHhCCCCCc
Q 024315          151 FKAEDR-------VENIRR------------I-GEVAKLFADAGVI--------CIACLISPYRKDR-DACRSMLPEGDF  201 (269)
Q Consensus       151 ~~~~~~-------~~~~~~------------l-~~~a~~~~~~g~~--------~iv~~~~~~~~~r-~~ar~ll~~~~~  201 (269)
                      |.+++.       .+++..            . ..+...+...++.        ......++++++| ..+++++.++++
T Consensus        87 ~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~l  166 (249)
T PRK14253         87 MVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDV  166 (249)
T ss_pred             EEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCE
Confidence            332221       111110            0 0011112222221        1123345666666 689999999998


Q ss_pred             cEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          202 IEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       202 ~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                        +++|+|+..++....+.+++.+++
T Consensus       167 --lllDEP~~~LD~~~~~~l~~~l~~  190 (249)
T PRK14253        167 --ILMDEPTSALDPIATHKIEELMEE  190 (249)
T ss_pred             --EEEeCCCccCCHHHHHHHHHHHHH
Confidence              999999999999888777766554

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.44  E-value=3.7e-13  Score=117.29  Aligned_cols=145  Identities=19%  Similarity=0.244  Sum_probs=94.7

Q ss_pred             cceEEeeCc---eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCC
Q 024315           80 TNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFK  152 (269)
Q Consensus        80 ~~~~~~~~~---v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~  152 (269)
                      .++.+.+..   ....+.+++.+.+|++++|+|+||||||||+++|++.+ ++.+|.+.++|.++..    ..+..++|.
T Consensus        15 ~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~~   93 (226)
T cd03248          15 QNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFY-QPQGGQVLLDGKPISQYEHKYLHSKVSLV   93 (226)
T ss_pred             EEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-CCCCcEEEECCCchHHcCHHHHHhhEEEE
Confidence            345555432   34678889999999999999999999999999999988 4668999999976531    111222322


Q ss_pred             hhhHH-------HHHH---------HHHH------HHHHHHhC--Ccce----eeccCChHHHHH-HHHHHhCCCCCccE
Q 024315          153 AEDRV-------ENIR---------RIGE------VAKLFADA--GVIC----IACLISPYRKDR-DACRSMLPEGDFIE  203 (269)
Q Consensus       153 ~~~~~-------~~~~---------~l~~------~a~~~~~~--g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~  203 (269)
                      +++..       +++.         .+..      ....+...  ++..    .+...++++++| ..+++++.++++  
T Consensus        94 ~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~l--  171 (226)
T cd03248          94 GQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQV--  171 (226)
T ss_pred             ecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE--
Confidence            22210       1000         0000      01111111  2221    233456666666 699999999999  


Q ss_pred             EEEeCChhHHHhcChhhHHHHHhc
Q 024315          204 VFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       204 i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      +++|+|+..++....+.+++.+++
T Consensus       172 lllDEPt~~LD~~~~~~l~~~l~~  195 (226)
T cd03248         172 LILDEATSALDAESEQQVQQALYD  195 (226)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHH
Confidence            999999999999988887776654

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.43  E-value=4.6e-13  Score=122.42  Aligned_cols=144  Identities=21%  Similarity=0.167  Sum_probs=97.2

Q ss_pred             cceEEeeCc-----eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC------------
Q 024315           80 TNILWHKNS-----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR------------  142 (269)
Q Consensus        80 ~~~~~~~~~-----v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~------------  142 (269)
                      .++.+.+..     ....+++++.+++|++++|+|+||||||||+++|+|.+ .+.+|.+.++|.+..            
T Consensus         6 ~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~~   84 (305)
T PRK13651          6 KNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALL-LPDTGTIEWIFKDEKNKKKTKEKEKVL   84 (305)
T ss_pred             EEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCC-CCCCcEEEEeceecccccccccccccc
Confidence            355555532     23677889999999999999999999999999999988 466899999875431            


Q ss_pred             ----------------cccccCCCCChhhH---------HHHHHH------------HHHHHHHHHhCCcc-e----eec
Q 024315          143 ----------------HGLNRDLSFKAEDR---------VENIRR------------IGEVAKLFADAGVI-C----IAC  180 (269)
Q Consensus       143 ----------------~~l~~~~g~~~~~~---------~~~~~~------------l~~~a~~~~~~g~~-~----iv~  180 (269)
                                      ..++..++|.+|+.         .+.+..            ..++...+...++. .    .+.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~  164 (305)
T PRK13651         85 EKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPF  164 (305)
T ss_pred             cccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChh
Confidence                            01122344444321         111110            01223344444552 2    233


Q ss_pred             cCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315          181 LISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       181 ~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      .+++++++| ..++.++.++++  +++|+|+..++....+.+.+.++
T Consensus       165 ~LSgGqkqrvalA~aL~~~P~l--LlLDEPt~~LD~~~~~~l~~~l~  209 (305)
T PRK13651        165 ELSGGQKRRVALAGILAMEPDF--LVFDEPTAGLDPQGVKEILEIFD  209 (305)
T ss_pred             hCCHHHHHHHHHHHHHHhCCCE--EEEeCCCCCCCHHHHHHHHHHHH
Confidence            456677776 689999999999  99999999999988877766554

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.43  E-value=8.2e-13  Score=115.39  Aligned_cols=142  Identities=18%  Similarity=0.181  Sum_probs=98.4

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC-----cccccCCCCChh
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR-----HGLNRDLSFKAE  154 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~-----~~l~~~~g~~~~  154 (269)
                      .++++.+......+..+.++++|+-++|+|+||||||||++.+++.++ +++|.+.+-|....     ..+++.+|++..
T Consensus        35 ~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~-pssg~~~~~G~~~G~~~~~~elrk~IG~vS~  113 (257)
T COG1119          35 KNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHP-PSSGDVTLLGRRFGKGETIFELRKRIGLVSS  113 (257)
T ss_pred             cceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccC-CCCCceeeeeeeccCCcchHHHHHHhCccCH
Confidence            466777777778888999999999999999999999999999999885 55777777776554     245666676665


Q ss_pred             hHHHHHHH---------------------------HHHHHHHHHhCCccee----eccCChHHHHH-HHHHHhCCCCCcc
Q 024315          155 DRVENIRR---------------------------IGEVAKLFADAGVICI----ACLISPYRKDR-DACRSMLPEGDFI  202 (269)
Q Consensus       155 ~~~~~~~~---------------------------l~~~a~~~~~~g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~  202 (269)
                      +....+..                           ..+...++...+...+    ....+-++++| -++|+++.+|++ 
T Consensus       114 ~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~L-  192 (257)
T COG1119         114 ELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPEL-  192 (257)
T ss_pred             HHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCE-
Confidence            44322111                           1112222333333222    12234455555 499999999999 


Q ss_pred             EEEEeCChhHHHhcChhhHHHH
Q 024315          203 EVFMDVPLQVCEARDPKGLYKL  224 (269)
Q Consensus       203 ~i~ld~p~~~l~~R~~k~l~~~  224 (269)
                       +++|||++.++--.+..+.+.
T Consensus       193 -LiLDEP~~GLDl~~re~ll~~  213 (257)
T COG1119         193 -LILDEPAQGLDLIAREQLLNR  213 (257)
T ss_pred             -EEecCccccCChHHHHHHHHH
Confidence             999999999998777665544

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.43  E-value=3.8e-13  Score=130.15  Aligned_cols=144  Identities=19%  Similarity=0.169  Sum_probs=98.5

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhh
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAED  155 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~  155 (269)
                      .++++.+......+++++++.+|++++|+|+||||||||+++|+|.+ .+.+|.+.++|.++..    ..+..+++..++
T Consensus         7 ~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~-~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~   85 (490)
T PRK10938          7 SQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGEL-PLLSGERQSQFSHITRLSFEQLQKLVSDEWQR   85 (490)
T ss_pred             EeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccC-CCCCceEEECCcccccCCHHHHHHHhceeccC
Confidence            46677776556788999999999999999999999999999999988 4668999998765431    111122332221


Q ss_pred             H----------------HHHHH----HHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCCh
Q 024315          156 R----------------VENIR----RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPL  210 (269)
Q Consensus       156 ~----------------~~~~~----~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~  210 (269)
                      .                .+.+.    .-..+...+...++..    .+...|+++++| ..+++++.++++  +++|||+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l--llLDEPt  163 (490)
T PRK10938         86 NNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDL--LILDEPF  163 (490)
T ss_pred             cchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCE--EEEcCCc
Confidence            0                01100    0011223344444422    234456777777 699999999999  9999999


Q ss_pred             hHHHhcChhhHHHHHh
Q 024315          211 QVCEARDPKGLYKLAR  226 (269)
Q Consensus       211 ~~l~~R~~k~l~~~~r  226 (269)
                      ..++....+.+.+.++
T Consensus       164 ~~LD~~~~~~l~~~l~  179 (490)
T PRK10938        164 DGLDVASRQQLAELLA  179 (490)
T ss_pred             ccCCHHHHHHHHHHHH
Confidence            9999998888765554

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.43  E-value=3.7e-13  Score=144.57  Aligned_cols=144  Identities=19%  Similarity=0.153  Sum_probs=101.4

Q ss_pred             eEEeeCceee--------ccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccC------------------------
Q 024315           82 ILWHKNSVDK--------RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR------------------------  129 (269)
Q Consensus        82 ~~~~~~~v~~--------~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~------------------------  129 (269)
                      +++.++.|+|        .++.+|++++|+.++|+|+|||||||+++.|+|++.+.                        
T Consensus      1166 I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~ 1245 (1466)
T PTZ00265       1166 IEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGD 1245 (1466)
T ss_pred             EEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccc
Confidence            4555555544        45568999999999999999999999999999998641                        


Q ss_pred             -----------------------------CccEEEECCeecCc----ccccCCCCChhhH-------HHHHHHH------
Q 024315          130 -----------------------------GKLTYILDGDNCRH----GLNRDLSFKAEDR-------VENIRRI------  163 (269)
Q Consensus       130 -----------------------------~~g~i~l~g~~~~~----~l~~~~g~~~~~~-------~~~~~~l------  163 (269)
                                                   .+|.|++||.+++.    .++..++|.+|+-       ++++..-      
T Consensus      1246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~ 1325 (1466)
T PTZ00265       1246 EEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATR 1325 (1466)
T ss_pred             cccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCH
Confidence                                         58999999999863    4566666666542       1222110      


Q ss_pred             HHHHHHHHh-----------CCccee----eccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          164 GEVAKLFAD-----------AGVICI----ACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       164 ~~~a~~~~~-----------~g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      .++......           .|+...    ...++++++|| .+||+++.++++  +++|||++.+|....+.+.+.+.+
T Consensus      1326 eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~I--LLLDEaTSaLD~~sE~~I~~~L~~ 1403 (1466)
T PTZ00265       1326 EDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKI--LLLDEATSSLDSNSEKLIEKTIVD 1403 (1466)
T ss_pred             HHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCE--EEEeCcccccCHHHHHHHHHHHHH
Confidence            011111111           122222    23457788888 799999999999  999999999999888887766554

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.43  E-value=4.1e-13  Score=121.04  Aligned_cols=143  Identities=18%  Similarity=0.242  Sum_probs=95.6

Q ss_pred             ceEEee--CceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChh
Q 024315           81 NILWHK--NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAE  154 (269)
Q Consensus        81 ~~~~~~--~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~  154 (269)
                      ++.+.+  ......+++++.+.+|++++|+|+||||||||+++|.+.++  .+|.|+++|.++..    .+++.++|.++
T Consensus         7 nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~--~~G~I~i~g~~i~~~~~~~lr~~i~~v~q   84 (275)
T cd03289           7 DLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN--TEGDIQIDGVSWNSVPLQKWRKAFGVIPQ   84 (275)
T ss_pred             EEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC--CCcEEEECCEEhhhCCHHHHhhhEEEECC
Confidence            444444  23345788899999999999999999999999999999985  47999999987642    22333343333


Q ss_pred             hH-------HHHHHHH-----HHHHHHHHhCCccee----e-----------ccCChHHHHH-HHHHHhCCCCCccEEEE
Q 024315          155 DR-------VENIRRI-----GEVAKLFADAGVICI----A-----------CLISPYRKDR-DACRSMLPEGDFIEVFM  206 (269)
Q Consensus       155 ~~-------~~~~~~l-----~~~a~~~~~~g~~~i----v-----------~~~~~~~~~r-~~ar~ll~~~~~~~i~l  206 (269)
                      +.       .+++...     .++...+...++...    .           ...++++++| ..+|+++.++++  +++
T Consensus        85 ~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i--lll  162 (275)
T cd03289          85 KVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI--LLL  162 (275)
T ss_pred             CcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE--EEE
Confidence            22       1111100     011112222232111    1           1245666666 699999999999  999


Q ss_pred             eCChhHHHhcChhhHHHHHhc
Q 024315          207 DVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       207 d~p~~~l~~R~~k~l~~~~r~  227 (269)
                      |+|+..++....+.+++.+++
T Consensus       163 DEpts~LD~~~~~~l~~~l~~  183 (275)
T cd03289         163 DEPSAHLDPITYQVIRKTLKQ  183 (275)
T ss_pred             ECccccCCHHHHHHHHHHHHH
Confidence            999999999988888777664

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.43  E-value=3e-13  Score=118.54  Aligned_cols=144  Identities=21%  Similarity=0.234  Sum_probs=92.3

Q ss_pred             ceEEeeC-ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhh
Q 024315           81 NILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAED  155 (269)
Q Consensus        81 ~~~~~~~-~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~  155 (269)
                      ++.+.+. .....+..++.+.+|++++|+|+||||||||+++|+|.+ ++.+|.|.++|.++..    .++..++|.+++
T Consensus         5 ~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~-~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~   83 (236)
T cd03253           5 NVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFY-DVSSGSILIDGQDIREVTLDSLRRAIGVVPQD   83 (236)
T ss_pred             EEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccc-CCCCCEEEECCEEhhhCCHHHHHhhEEEECCC
Confidence            3444442 234567889999999999999999999999999999987 4678999999977642    111122222221


Q ss_pred             H-------HHHHHH---------HHH------HHHHHHhC--Ccc----eeeccCChHHHHH-HHHHHhCCCCCccEEEE
Q 024315          156 R-------VENIRR---------IGE------VAKLFADA--GVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFM  206 (269)
Q Consensus       156 ~-------~~~~~~---------l~~------~a~~~~~~--g~~----~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~l  206 (269)
                      .       .+++..         +..      ....+...  +..    .-....++++++| ..+++++.++++  +++
T Consensus        84 ~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l--lll  161 (236)
T cd03253          84 TVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI--LLL  161 (236)
T ss_pred             ChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE--EEE
Confidence            1       011100         000      00011110  111    0123456666666 689999999999  999


Q ss_pred             eCChhHHHhcChhhHHHHHhc
Q 024315          207 DVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       207 d~p~~~l~~R~~k~l~~~~r~  227 (269)
                      |+|+..++....+.+++.+.+
T Consensus       162 DEP~~~LD~~~~~~l~~~l~~  182 (236)
T cd03253         162 DEATSALDTHTEREIQAALRD  182 (236)
T ss_pred             eCCcccCCHHHHHHHHHHHHH
Confidence            999999999988887766653

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.43  E-value=7.1e-13  Score=116.00  Aligned_cols=135  Identities=20%  Similarity=0.283  Sum_probs=89.2

Q ss_pred             eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhH-------HH
Q 024315           90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDR-------VE  158 (269)
Q Consensus        90 ~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~-------~~  158 (269)
                      ...+..++.+.+|++++|+|+||||||||++.|++.++ +.+|.+.++|.++..    .++..++|.+++.       .+
T Consensus        16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e   94 (234)
T cd03251          16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD-VDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAE   94 (234)
T ss_pred             cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc-CCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHH
Confidence            46778899999999999999999999999999999884 678999999977532    1111222222210       11


Q ss_pred             HHH---------HHHH------HHHHHHhC--Ccce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhc
Q 024315          159 NIR---------RIGE------VAKLFADA--GVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEAR  216 (269)
Q Consensus       159 ~~~---------~l~~------~a~~~~~~--g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R  216 (269)
                      ++.         .+..      ....+...  ++..    .+...++++++| ..+++++.++++  +++|+|+..++..
T Consensus        95 nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l--llLDEP~~~LD~~  172 (234)
T cd03251          95 NIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI--LILDEATSALDTE  172 (234)
T ss_pred             HhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE--EEEeCccccCCHH
Confidence            110         0000      01111111  1211    123446666666 699999999998  9999999999999


Q ss_pred             ChhhHHHHHhc
Q 024315          217 DPKGLYKLARE  227 (269)
Q Consensus       217 ~~k~l~~~~r~  227 (269)
                      ....+++.+++
T Consensus       173 ~~~~l~~~l~~  183 (234)
T cd03251         173 SERLVQAALER  183 (234)
T ss_pred             HHHHHHHHHHH
Confidence            88887766653

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.43  E-value=6.1e-13  Score=128.82  Aligned_cols=143  Identities=17%  Similarity=0.247  Sum_probs=97.8

Q ss_pred             ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-----ccccCCCCChhh
Q 024315           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----GLNRDLSFKAED  155 (269)
Q Consensus        81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-----~l~~~~g~~~~~  155 (269)
                      ++.+.+......+++++.+.+|++++|+|+||||||||+++|++.+ .+.+|.|.++|.++..     .++..++|.+|+
T Consensus         3 nl~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~   81 (491)
T PRK10982          3 NISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIY-QKDSGSILFQGKEIDFKSSKEALENGISMVHQE   81 (491)
T ss_pred             ceEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC-CCCceEEEECCEECCCCCHHHHHhCCEEEEecc
Confidence            4556665666788999999999999999999999999999999987 4668999999987531     011222222221


Q ss_pred             H--------HHHHH---------------HHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEe
Q 024315          156 R--------VENIR---------------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMD  207 (269)
Q Consensus       156 ~--------~~~~~---------------~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld  207 (269)
                      .        .+.+.               ........+...++..    .+...++++++| ..+++++.++++  +++|
T Consensus        82 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~l--llLD  159 (491)
T PRK10982         82 LNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKI--VIMD  159 (491)
T ss_pred             cccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCE--EEEe
Confidence            1        00000               0011223334444422    234456777777 689999999999  9999


Q ss_pred             CChhHHHhcChhhHHHHHh
Q 024315          208 VPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       208 ~p~~~l~~R~~k~l~~~~r  226 (269)
                      ||+..++....+.+++.++
T Consensus       160 EPt~~LD~~~~~~l~~~l~  178 (491)
T PRK10982        160 EPTSSLTEKEVNHLFTIIR  178 (491)
T ss_pred             CCCCCCCHHHHHHHHHHHH
Confidence            9999999988888765554

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.43  E-value=7.3e-13  Score=119.63  Aligned_cols=145  Identities=16%  Similarity=0.211  Sum_probs=97.0

Q ss_pred             cceEEeeCc--eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCC--ccEEEECCeecCc----ccccCCCC
Q 024315           80 TNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG--KLTYILDGDNCRH----GLNRDLSF  151 (269)
Q Consensus        80 ~~~~~~~~~--v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~--~g~i~l~g~~~~~----~l~~~~g~  151 (269)
                      .++.+.+..  ....+.+++++.+|++++|+|+||||||||+++|+|.+.+..  .|.|.++|.++..    .++..++|
T Consensus         9 ~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~   88 (282)
T PRK13640          9 KHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGI   88 (282)
T ss_pred             EEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEE
Confidence            345555532  346788899999999999999999999999999999985432  2899999988742    12223344


Q ss_pred             ChhhHH---------HHHHH-----------H-HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEE
Q 024315          152 KAEDRV---------ENIRR-----------I-GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVF  205 (269)
Q Consensus       152 ~~~~~~---------~~~~~-----------l-~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~  205 (269)
                      ..++..         +.+..           . ..+...+...++..    .....++++++| ..+++++.++++  ++
T Consensus        89 v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~l--ll  166 (282)
T PRK13640         89 VFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKI--II  166 (282)
T ss_pred             EEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCE--EE
Confidence            333221         11110           0 01122333344422    233456666666 689999999999  99


Q ss_pred             EeCChhHHHhcChhhHHHHHh
Q 024315          206 MDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       206 ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      +|+|+..++....+.+.+.++
T Consensus       167 lDEPt~gLD~~~~~~l~~~l~  187 (282)
T PRK13640        167 LDESTSMLDPAGKEQILKLIR  187 (282)
T ss_pred             EECCcccCCHHHHHHHHHHHH
Confidence            999999999998887765554

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.43  E-value=6.4e-13  Score=129.23  Aligned_cols=144  Identities=18%  Similarity=0.184  Sum_probs=100.1

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-----cccCCCCChh
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAE  154 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-----l~~~~g~~~~  154 (269)
                      .++++.+......++++|.+.+|++++|+|+||||||||+++|++.++ +.+|.|.++|.++...     .+..++|..+
T Consensus         9 ~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q   87 (510)
T PRK09700          9 AGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE-PTKGTITINNINYNKLDHKLAAQLGIGIIYQ   87 (510)
T ss_pred             eeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC-CCccEEEECCEECCCCCHHHHHHCCeEEEee
Confidence            466666666667889999999999999999999999999999999884 6689999999876421     1122333222


Q ss_pred             hH--------HHHHH------------------H-HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCcc
Q 024315          155 DR--------VENIR------------------R-IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFI  202 (269)
Q Consensus       155 ~~--------~~~~~------------------~-l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~  202 (269)
                      +.        .+.+.                  . ...+...+...++..    .+...|+++++| ..+++++.++++ 
T Consensus        88 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~l-  166 (510)
T PRK09700         88 ELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKV-  166 (510)
T ss_pred             cccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCE-
Confidence            11        01100                  0 011223344445432    234457777777 689999999999 


Q ss_pred             EEEEeCChhHHHhcChhhHHHHHh
Q 024315          203 EVFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       203 ~i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                       +++|||+..++....+.+.+.++
T Consensus       167 -llLDEPt~~LD~~~~~~l~~~l~  189 (510)
T PRK09700        167 -IIMDEPTSSLTNKEVDYLFLIMN  189 (510)
T ss_pred             -EEEeCCCCCCCHHHHHHHHHHHH
Confidence             99999999999998888765544

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.43  E-value=1.1e-12  Score=117.18  Aligned_cols=146  Identities=16%  Similarity=0.213  Sum_probs=96.3

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc-C---CccEEEECCeecC--------ccccc
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW-R---GKLTYILDGDNCR--------HGLNR  147 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~-~---~~g~i~l~g~~~~--------~~l~~  147 (269)
                      .++.+.+........+++++++|++++|+|+||||||||+++|++.+.+ +   .+|.|.++|.++.        ..++.
T Consensus        20 ~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~   99 (265)
T PRK14252         20 NKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRM   99 (265)
T ss_pred             EEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhc
Confidence            4555555555677889999999999999999999999999999998753 2   5789999886542        01222


Q ss_pred             CCCCChhh-------HHHHHHH------------H-HHHHHHHHhCCcc--------eeeccCChHHHHH-HHHHHhCCC
Q 024315          148 DLSFKAED-------RVENIRR------------I-GEVAKLFADAGVI--------CIACLISPYRKDR-DACRSMLPE  198 (269)
Q Consensus       148 ~~g~~~~~-------~~~~~~~------------l-~~~a~~~~~~g~~--------~iv~~~~~~~~~r-~~ar~ll~~  198 (269)
                      .++|.+++       ..+++..            . ......+...++.        ......++++++| ..+++++.+
T Consensus       100 ~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~  179 (265)
T PRK14252        100 RISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATD  179 (265)
T ss_pred             cEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcC
Confidence            33333332       1111110            0 1112222223321        1223345666666 689999999


Q ss_pred             CCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          199 GDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       199 ~~~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      +++  +++|+|+..++....+.+++.+++
T Consensus       180 p~l--lllDEPt~gLD~~~~~~l~~~l~~  206 (265)
T PRK14252        180 PEI--LLFDEPTSALDPIATASIEELISD  206 (265)
T ss_pred             CCE--EEEeCCCccCCHHHHHHHHHHHHH
Confidence            999  999999999999888877766553

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.43  E-value=4e-13  Score=117.95  Aligned_cols=137  Identities=23%  Similarity=0.264  Sum_probs=90.8

Q ss_pred             eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhHH-------
Q 024315           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDRV-------  157 (269)
Q Consensus        89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~~-------  157 (269)
                      ....+++++++++|++++|+|+||||||||+++|++.+ .+.+|.+.++|.++..    ..+..++|.+++..       
T Consensus        16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~   94 (238)
T cd03249          16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFY-DPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIA   94 (238)
T ss_pred             ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccC-CCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHH
Confidence            34678889999999999999999999999999999988 4668999999977531    11122333332210       


Q ss_pred             HHHH---------HHHHH------HHHHHhC--Ccc----eeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHh
Q 024315          158 ENIR---------RIGEV------AKLFADA--GVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEA  215 (269)
Q Consensus       158 ~~~~---------~l~~~------a~~~~~~--g~~----~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~  215 (269)
                      +.+.         .+...      ...+...  +..    ......++++++| ..+++++.++++  +++|+|+..++.
T Consensus        95 e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l--lllDEP~~gLD~  172 (238)
T cd03249          95 ENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI--LLLDEATSALDA  172 (238)
T ss_pred             HHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE--EEEeCccccCCH
Confidence            0000         00000      0000000  111    1123456666666 588999999998  999999999999


Q ss_pred             cChhhHHHHHhcC
Q 024315          216 RDPKGLYKLAREG  228 (269)
Q Consensus       216 R~~k~l~~~~r~g  228 (269)
                      ..++.+++.+++-
T Consensus       173 ~~~~~l~~~l~~~  185 (238)
T cd03249         173 ESEKLVQEALDRA  185 (238)
T ss_pred             HHHHHHHHHHHHh
Confidence            9988888777643

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.43  E-value=2.7e-13  Score=119.40  Aligned_cols=141  Identities=21%  Similarity=0.233  Sum_probs=96.5

Q ss_pred             cceEEeeCce-eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-----ccccCCCCCh
Q 024315           80 TNILWHKNSV-DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----GLNRDLSFKA  153 (269)
Q Consensus        80 ~~~~~~~~~v-~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-----~l~~~~g~~~  153 (269)
                      .++.+.+.+. .+.+.+++.+.+|+.++|+|+||||||||++.|.+++. +.+|.|.++|.++..     .+++..|+..
T Consensus         7 ~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~-p~~G~v~~~g~~~~~~~~~~~~~~~vG~Vf   85 (235)
T COG1122           7 ENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK-PTSGEVLVDGLDTSSEKSLLELRQKVGLVF   85 (235)
T ss_pred             EEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc-CCCCEEEECCeeccchhhHHHhhcceEEEE
Confidence            3555555443 66778899999999999999999999999999999985 668999999987541     2333333332


Q ss_pred             hhH------------------------HHHHHHHHHHHHHHHhCCcc----eeeccCChHHHHH-HHHHHhCCCCCccEE
Q 024315          154 EDR------------------------VENIRRIGEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEV  204 (269)
Q Consensus       154 ~~~------------------------~~~~~~l~~~a~~~~~~g~~----~iv~~~~~~~~~r-~~ar~ll~~~~~~~i  204 (269)
                      |.-                        .+...+   +...+...++.    .-...+|+++++| .++..++-+|++  +
T Consensus        86 Qnpd~q~~~~tV~~evafg~~n~g~~~~e~~~r---v~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~i--l  160 (235)
T COG1122          86 QNPDDQLFGPTVEDEVAFGLENLGLPREEIEER---VAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEI--L  160 (235)
T ss_pred             ECcccccccCcHHHHHhhchhhcCCCHHHHHHH---HHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCE--E
Confidence            211                        111222   22233333442    2234457777777 577777778888  9


Q ss_pred             EEeCChhHHHhcChhhHHHHHh
Q 024315          205 FMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       205 ~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      .+|||+..++.+..+.+.+..+
T Consensus       161 iLDEPta~LD~~~~~~l~~~l~  182 (235)
T COG1122         161 LLDEPTAGLDPKGRRELLELLK  182 (235)
T ss_pred             EEcCCCCCCCHHHHHHHHHHHH
Confidence            9999999999988877655544

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.42  E-value=7.4e-13  Score=119.24  Aligned_cols=144  Identities=15%  Similarity=0.228  Sum_probs=98.0

Q ss_pred             cceEEeeCc---eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCC
Q 024315           80 TNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFK  152 (269)
Q Consensus        80 ~~~~~~~~~---v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~  152 (269)
                      .++.+.+..   +...+.+++.+.+|++++|+|+||||||||+++|++.+ ++.+|.|.++|.++..    .++..++|.
T Consensus         8 ~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~i~~~~~~~~~~~i~~v   86 (277)
T PRK13642          8 ENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLF-EEFEGKVKIDGELLTAENVWNLRRKIGMV   86 (277)
T ss_pred             EEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCCCEEEECCEECCcCCHHHHhcceEEE
Confidence            455555532   33678889999999999999999999999999999988 4678999999987642    122334444


Q ss_pred             hhhH---------HHHHHH-----------H-HHHHHHHHhCCccee----eccCChHHHHH-HHHHHhCCCCCccEEEE
Q 024315          153 AEDR---------VENIRR-----------I-GEVAKLFADAGVICI----ACLISPYRKDR-DACRSMLPEGDFIEVFM  206 (269)
Q Consensus       153 ~~~~---------~~~~~~-----------l-~~~a~~~~~~g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~i~l  206 (269)
                      .++.         .+++..           . ..+...+...++...    +...++++++| ..+++++.++++  +++
T Consensus        87 ~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~l--lll  164 (277)
T PRK13642         87 FQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEI--IIL  164 (277)
T ss_pred             EECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCE--EEE
Confidence            4332         111110           0 011122333333221    23356666666 699999999999  999


Q ss_pred             eCChhHHHhcChhhHHHHHh
Q 024315          207 DVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       207 d~p~~~l~~R~~k~l~~~~r  226 (269)
                      |+|+..++....+.+++.++
T Consensus       165 DEPt~~LD~~~~~~l~~~l~  184 (277)
T PRK13642        165 DESTSMLDPTGRQEIMRVIH  184 (277)
T ss_pred             eCCcccCCHHHHHHHHHHHH
Confidence            99999999999888776654

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.42  E-value=8.8e-13  Score=116.98  Aligned_cols=146  Identities=19%  Similarity=0.195  Sum_probs=96.1

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc-C---CccEEEECCeecCc------ccccCC
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW-R---GKLTYILDGDNCRH------GLNRDL  149 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~-~---~~g~i~l~g~~~~~------~l~~~~  149 (269)
                      .++.+.+......+++++++.+|++++|+|+||||||||+++|++.+.. +   ..|.+.++|.++..      ..+..+
T Consensus        10 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i   89 (253)
T PRK14261         10 KNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKI   89 (253)
T ss_pred             eeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceE
Confidence            4566666555677889999999999999999999999999999997642 2   37999999987642      112223


Q ss_pred             CCChhhH-------HHHHH------------HH-HHHHHHHHhCCc--------ceeeccCChHHHHH-HHHHHhCCCCC
Q 024315          150 SFKAEDR-------VENIR------------RI-GEVAKLFADAGV--------ICIACLISPYRKDR-DACRSMLPEGD  200 (269)
Q Consensus       150 g~~~~~~-------~~~~~------------~l-~~~a~~~~~~g~--------~~iv~~~~~~~~~r-~~ar~ll~~~~  200 (269)
                      +|..++.       .+++.            .. ..+...+...++        ...+...++++++| ..+++++.+++
T Consensus        90 ~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~  169 (253)
T PRK14261         90 GMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPE  169 (253)
T ss_pred             EEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence            3322221       01110            00 011112222222        11233456666666 68999999999


Q ss_pred             ccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          201 FIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       201 ~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      +  +++|+|+..++....+.+.+.++.
T Consensus       170 l--llLDEP~~gLD~~~~~~l~~~l~~  194 (253)
T PRK14261        170 V--ILMDEPCSALDPIATAKIEDLIED  194 (253)
T ss_pred             E--EEEeCCcccCCHHHHHHHHHHHHH
Confidence            9  999999999999988887766553

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.42  E-value=9.8e-13  Score=117.37  Aligned_cols=146  Identities=18%  Similarity=0.128  Sum_probs=96.3

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccC----CccEEEECCeecCc------ccccCC
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR----GKLTYILDGDNCRH------GLNRDL  149 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~----~~g~i~l~g~~~~~------~l~~~~  149 (269)
                      .++.+.+......+++++++++|++++|+|+||||||||+++|++.+++.    ..|.+.++|.++..      .++..+
T Consensus        11 ~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i   90 (261)
T PRK14258         11 NNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQV   90 (261)
T ss_pred             eeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccE
Confidence            45666555545678899999999999999999999999999999998642    26899999877521      112222


Q ss_pred             CCChhh-------HHHHHHH-------------HHHHHHHHHhCCcc--------eeeccCChHHHHH-HHHHHhCCCCC
Q 024315          150 SFKAED-------RVENIRR-------------IGEVAKLFADAGVI--------CIACLISPYRKDR-DACRSMLPEGD  200 (269)
Q Consensus       150 g~~~~~-------~~~~~~~-------------l~~~a~~~~~~g~~--------~iv~~~~~~~~~r-~~ar~ll~~~~  200 (269)
                      +|.+++       ..+++..             ...+...+...++.        ..+...++++++| ..+++++.+++
T Consensus        91 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~  170 (261)
T PRK14258         91 SMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPK  170 (261)
T ss_pred             EEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence            222221       1111110             00111222233321        1223456666666 68999999999


Q ss_pred             ccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          201 FIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       201 ~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      +  +++|+|+..++....+.+++.+++
T Consensus       171 v--llLDEP~~~LD~~~~~~l~~~l~~  195 (261)
T PRK14258        171 V--LLMDEPCFGLDPIASMKVESLIQS  195 (261)
T ss_pred             E--EEEeCCCccCCHHHHHHHHHHHHH
Confidence            9  999999999999988887766553

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.42  E-value=1e-12  Score=121.36  Aligned_cols=135  Identities=20%  Similarity=0.182  Sum_probs=93.2

Q ss_pred             eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc----CCccEEEECCeecCc------ccccCCCCChhhH---
Q 024315           90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH------GLNRDLSFKAEDR---  156 (269)
Q Consensus        90 ~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~----~~~g~i~l~g~~~~~------~l~~~~g~~~~~~---  156 (269)
                      ....++++++++|++++|+|+||||||||+++|.+.+..    +.+|.|.++|.++..      .++..++|.+++.   
T Consensus        96 ~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~  175 (329)
T PRK14257         96 HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPF  175 (329)
T ss_pred             eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccC
Confidence            456788999999999999999999999999999998742    357999999998752      2333444443321   


Q ss_pred             ----HHHHHH---H-----HH-----HHHHHHhCCc--------ceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCCh
Q 024315          157 ----VENIRR---I-----GE-----VAKLFADAGV--------ICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPL  210 (269)
Q Consensus       157 ----~~~~~~---l-----~~-----~a~~~~~~g~--------~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~  210 (269)
                          .+++..   .     .+     ....+...++        ......+++++++| ..+|+++.++++  +++|+|+
T Consensus       176 ~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~I--lLLDEPt  253 (329)
T PRK14257        176 EMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEV--LLMDEPT  253 (329)
T ss_pred             CCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCE--EEEeCCc
Confidence                122210   0     00     1112222222        12233456777777 699999999999  9999999


Q ss_pred             hHHHhcChhhHHHHHh
Q 024315          211 QVCEARDPKGLYKLAR  226 (269)
Q Consensus       211 ~~l~~R~~k~l~~~~r  226 (269)
                      ..++....+.+.+.++
T Consensus       254 s~LD~~~~~~i~~~i~  269 (329)
T PRK14257        254 SALDPIATAKIEELIL  269 (329)
T ss_pred             ccCCHHHHHHHHHHHH
Confidence            9999988877766655

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.42  E-value=1e-12  Score=114.60  Aligned_cols=146  Identities=18%  Similarity=0.211  Sum_probs=95.6

Q ss_pred             cceEEeeCc----eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc--CCccEEEECCeecCc-ccccCCCCC
Q 024315           80 TNILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW--RGKLTYILDGDNCRH-GLNRDLSFK  152 (269)
Q Consensus        80 ~~~~~~~~~----v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~--~~~g~i~l~g~~~~~-~l~~~~g~~  152 (269)
                      .++.+.+..    ....+.+++++++|++++|+|+||||||||++.|++.++.  +.+|.+.++|.++.. ..+..+++.
T Consensus         7 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~   86 (226)
T cd03234           7 WDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYV   86 (226)
T ss_pred             ecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEe
Confidence            345555532    4567888999999999999999999999999999998852  568999999987532 112222222


Q ss_pred             hhh--------HHHHHHH---H------------HHHHH-HHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccE
Q 024315          153 AED--------RVENIRR---I------------GEVAK-LFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIE  203 (269)
Q Consensus       153 ~~~--------~~~~~~~---l------------~~~a~-~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~  203 (269)
                      +++        ..+++..   .            ..... .+...++..    .+...++++++| ..+++++.++++  
T Consensus        87 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~i--  164 (226)
T cd03234          87 RQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKV--  164 (226)
T ss_pred             CCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCE--
Confidence            221        1111110   0            00011 222223221    123446666666 689999999999  


Q ss_pred             EEEeCChhHHHhcChhhHHHHHhc
Q 024315          204 VFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       204 i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      +++|+|+..++....+.+.+.+++
T Consensus       165 lllDEP~~gLD~~~~~~~~~~l~~  188 (226)
T cd03234         165 LILDEPTSGLDSFTALNLVSTLSQ  188 (226)
T ss_pred             EEEeCCCcCCCHHHHHHHHHHHHH
Confidence            999999999999888887766553

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.42  E-value=2.8e-13  Score=112.71  Aligned_cols=131  Identities=22%  Similarity=0.239  Sum_probs=91.2

Q ss_pred             CceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-------ccc-cCCCCChhhHH-
Q 024315           87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-------GLN-RDLSFKAEDRV-  157 (269)
Q Consensus        87 ~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-------~l~-~~~g~~~~~~~-  157 (269)
                      ..++....+++.+++|+.++|+||||||||||+..|+++ ..+.+|.|++.|.++..       .++ ++.||..|... 
T Consensus        21 ~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGL-d~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~L   99 (228)
T COG4181          21 GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGL-DDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHL   99 (228)
T ss_pred             cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcC-CCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeec
Confidence            367778889999999999999999999999999999995 46789999999988752       111 22343333210 


Q ss_pred             -------HHH-----------HHHH-HHHHHHHhCCcc----eeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHH
Q 024315          158 -------ENI-----------RRIG-EVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVC  213 (269)
Q Consensus       158 -------~~~-----------~~l~-~~a~~~~~~g~~----~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l  213 (269)
                             ++.           +... ....++...|+.    -+....+++++|| .++|+++..|++  +|-|+|+-.+
T Consensus       100 ip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~v--LfADEPTGNL  177 (228)
T COG4181         100 IPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDV--LFADEPTGNL  177 (228)
T ss_pred             cccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCE--EeccCCCCCc
Confidence                   000           0000 111233333432    2445567788888 699999999998  8999999999


Q ss_pred             HhcChhh
Q 024315          214 EARDPKG  220 (269)
Q Consensus       214 ~~R~~k~  220 (269)
                      +...-+.
T Consensus       178 D~~Tg~~  184 (228)
T COG4181         178 DRATGDK  184 (228)
T ss_pred             chhHHHH
Confidence            8776555

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.42  E-value=1.1e-12  Score=116.03  Aligned_cols=146  Identities=20%  Similarity=0.194  Sum_probs=97.1

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhc--c--CCccEEEECCeecCc------ccccCC
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH--W--RGKLTYILDGDNCRH------GLNRDL  149 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~--~--~~~g~i~l~g~~~~~------~l~~~~  149 (269)
                      .++.+.+......+.+++.+.+|++++|+|+||||||||+++|+|.+.  +  +.+|.|.++|.++..      .++..+
T Consensus         7 ~~v~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i   86 (250)
T PRK14266          7 ENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKV   86 (250)
T ss_pred             EeEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhhe
Confidence            455555555567788999999999999999999999999999999764  2  257999999987642      122233


Q ss_pred             CCChhhH-------HHHHHH------------HH-HHHHHHHhCCcc--------eeeccCChHHHHH-HHHHHhCCCCC
Q 024315          150 SFKAEDR-------VENIRR------------IG-EVAKLFADAGVI--------CIACLISPYRKDR-DACRSMLPEGD  200 (269)
Q Consensus       150 g~~~~~~-------~~~~~~------------l~-~~a~~~~~~g~~--------~iv~~~~~~~~~r-~~ar~ll~~~~  200 (269)
                      +|.+++.       .+++..            .. .....+...++.        ......++++++| ..+++++.+++
T Consensus        87 ~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~  166 (250)
T PRK14266         87 GMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPE  166 (250)
T ss_pred             EEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence            3333221       111110            00 011122222321        1133456666666 68999999999


Q ss_pred             ccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          201 FIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       201 ~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      +  +++|+|+..++....+.+++.+++
T Consensus       167 l--lllDEP~~gLD~~~~~~l~~~l~~  191 (250)
T PRK14266        167 V--ILMDEPCSALDPISTTKIEDLIHK  191 (250)
T ss_pred             E--EEEcCCCccCCHHHHHHHHHHHHH
Confidence            9  999999999999888887766654

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=99.41  E-value=8.3e-13  Score=129.99  Aligned_cols=134  Identities=22%  Similarity=0.273  Sum_probs=91.6

Q ss_pred             eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhH-------HHH
Q 024315           91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDR-------VEN  159 (269)
Q Consensus        91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~-------~~~  159 (269)
                      ..++.++++++|+.++|+|+||||||||++.|+|.+ ++.+|.+.++|.++..    .+++.++|.+|+.       +++
T Consensus       355 iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~-~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~N  433 (576)
T TIGR02204       355 ALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFY-DPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMEN  433 (576)
T ss_pred             cccceeEEecCCCEEEEECCCCCCHHHHHHHHHhcc-CCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHH
Confidence            346678999999999999999999999999999988 5678999999987642    2223333333321       111


Q ss_pred             HH-------------HHHH--HHHHHHh--CCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcC
Q 024315          160 IR-------------RIGE--VAKLFAD--AGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD  217 (269)
Q Consensus       160 ~~-------------~l~~--~a~~~~~--~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~  217 (269)
                      +.             .+..  ....+..  .|...    -....++++++| ..+|+++.++++  +.+|||++.++...
T Consensus       434 i~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~i--lilDEpts~lD~~~  511 (576)
T TIGR02204       434 IRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPI--LLLDEATSALDAES  511 (576)
T ss_pred             HhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCe--EEEeCcccccCHHH
Confidence            11             1100  1111111  13221    123457777777 799999999999  99999999999998


Q ss_pred             hhhHHHHHhc
Q 024315          218 PKGLYKLARE  227 (269)
Q Consensus       218 ~k~l~~~~r~  227 (269)
                      .+.+++.+++
T Consensus       512 ~~~i~~~l~~  521 (576)
T TIGR02204       512 EQLVQQALET  521 (576)
T ss_pred             HHHHHHHHHH
Confidence            8877666554

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.41  E-value=3.1e-13  Score=130.03  Aligned_cols=130  Identities=20%  Similarity=0.245  Sum_probs=88.8

Q ss_pred             eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhh-------HHH
Q 024315           90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAED-------RVE  158 (269)
Q Consensus        90 ~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~-------~~~  158 (269)
                      ....+.++++++|+.++|+|+||||||||++.|+|++ ++..|.|.++|.+++.    .+++++.+.+|.       .++
T Consensus       335 ~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~-~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTire  413 (559)
T COG4988         335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFL-APTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRE  413 (559)
T ss_pred             cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcC-CCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHH
Confidence            3445679999999999999999999999999999988 4679999999987763    233333333221       111


Q ss_pred             HH------------HHHHHH---HHHHHh-CCccee----eccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcC
Q 024315          159 NI------------RRIGEV---AKLFAD-AGVICI----ACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD  217 (269)
Q Consensus       159 ~~------------~~l~~~---a~~~~~-~g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~  217 (269)
                      ++            ....+.   ...... .|+...    ....|+++.+| ..+|+++.++++  +++|||+..+|.+.
T Consensus       414 Ni~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l--~llDEpTA~LD~et  491 (559)
T COG4988         414 NILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASL--LLLDEPTAHLDAET  491 (559)
T ss_pred             HhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCE--EEecCCccCCCHhH
Confidence            11            111111   111111 233322    23357888888 699999999888  89999999999888


Q ss_pred             hhhHH
Q 024315          218 PKGLY  222 (269)
Q Consensus       218 ~k~l~  222 (269)
                      .+-+.
T Consensus       492 E~~i~  496 (559)
T COG4988         492 EQIIL  496 (559)
T ss_pred             HHHHH
Confidence            76543

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]

Probab=99.41  E-value=6.7e-13  Score=125.34  Aligned_cols=139  Identities=19%  Similarity=0.262  Sum_probs=96.9

Q ss_pred             ceEEeeCceee------ccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCC
Q 024315           81 NILWHKNSVDK------RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLS  150 (269)
Q Consensus        81 ~~~~~~~~v~~------~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g  150 (269)
                      .++|.++.+.+      ..++||++++|++++|+||||+||||+.+.|.+.+ +-.+|.|.+||.+++.    .+++.+|
T Consensus       537 ~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRff-dv~sGsI~iDgqdIrnvt~~SLRs~IG  615 (790)
T KOG0056|consen  537 KIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFF-DVNSGSITIDGQDIRNVTQSSLRSSIG  615 (790)
T ss_pred             eEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHh-hccCceEEEcCchHHHHHHHHHHHhcC
Confidence            44555444443      46679999999999999999999999999999977 6679999999999973    6777788


Q ss_pred             CChhhHH-------------------HHHHHHHHHHH----HHH-hCCcc----eeeccCChHHHHH-HHHHHhCCCCCc
Q 024315          151 FKAEDRV-------------------ENIRRIGEVAK----LFA-DAGVI----CIACLISPYRKDR-DACRSMLPEGDF  201 (269)
Q Consensus       151 ~~~~~~~-------------------~~~~~l~~~a~----~~~-~~g~~----~iv~~~~~~~~~r-~~ar~ll~~~~~  201 (269)
                      ..+|+-.                   +.+...++.+.    +++ ..|..    +-..-.+++++|| +++|.+++.|.+
T Consensus       616 VVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~i  695 (790)
T KOG0056|consen  616 VVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSI  695 (790)
T ss_pred             cccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcE
Confidence            7777531                   11111111111    111 01111    1122346677777 799999999988


Q ss_pred             cEEEEeCChhHHHhcChhhHH
Q 024315          202 IEVFMDVPLQVCEARDPKGLY  222 (269)
Q Consensus       202 ~~i~ld~p~~~l~~R~~k~l~  222 (269)
                        |++|+.++.++....+.+.
T Consensus       696 --IlLDEATSALDT~tER~IQ  714 (790)
T KOG0056|consen  696 --ILLDEATSALDTNTERAIQ  714 (790)
T ss_pred             --EEEcchhhhcCCccHHHHH
Confidence              9999999999877665554

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.41  E-value=8.2e-13  Score=129.43  Aligned_cols=135  Identities=22%  Similarity=0.253  Sum_probs=91.9

Q ss_pred             eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhH-------HH
Q 024315           90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDR-------VE  158 (269)
Q Consensus        90 ~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~-------~~  158 (269)
                      ...++.++++++|+.++|+|+||||||||++.|+|.+ ++.+|.+.++|.++..    .+++.+++.+|+.       ++
T Consensus       332 ~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~-~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~  410 (544)
T TIGR01842       332 PTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIW-PPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAE  410 (544)
T ss_pred             cccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHH
Confidence            3456779999999999999999999999999999988 5778999999987653    1222223322211       11


Q ss_pred             HHH-------------HHH--HHHHHHHhC--Ccce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhc
Q 024315          159 NIR-------------RIG--EVAKLFADA--GVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEAR  216 (269)
Q Consensus       159 ~~~-------------~l~--~~a~~~~~~--g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R  216 (269)
                      ++.             .+.  .....+...  |...    -....++++++| ..+|+++.++++  +.+|||++.+|..
T Consensus       411 Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~i--lilDEpts~LD~~  488 (544)
T TIGR01842       411 NIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKL--VVLDEPNSNLDEE  488 (544)
T ss_pred             HHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCE--EEEeCCccccCHH
Confidence            111             000  001111111  2222    133457777777 699999999999  9999999999999


Q ss_pred             ChhhHHHHHhc
Q 024315          217 DPKGLYKLARE  227 (269)
Q Consensus       217 ~~k~l~~~~r~  227 (269)
                      ..+.+.+.+++
T Consensus       489 ~~~~i~~~l~~  499 (544)
T TIGR01842       489 GEQALANAIKA  499 (544)
T ss_pred             HHHHHHHHHHH
Confidence            88887766554

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.41  E-value=1.6e-12  Score=120.39  Aligned_cols=139  Identities=21%  Similarity=0.280  Sum_probs=95.2

Q ss_pred             EeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-------ccccCC-------
Q 024315           84 WHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-------GLNRDL-------  149 (269)
Q Consensus        84 ~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-------~l~~~~-------  149 (269)
                      +....+.+.+.+++++++|++++|+|.||||||||..+|.+++..  .|.|+|+|.++..       .+++++       
T Consensus       295 r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s--~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDP  372 (534)
T COG4172         295 RTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS--QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDP  372 (534)
T ss_pred             ccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc--CceEEECCccccccChhhhhhhhhhceEEEeCC
Confidence            334468889999999999999999999999999999999998853  5899999998752       111111       


Q ss_pred             --CCChh----hH-----------HHHHHHHHHHHHHHHhCCcce-----eeccCChHHHHH-HHHHHhCCCCCccEEEE
Q 024315          150 --SFKAE----DR-----------VENIRRIGEVAKLFADAGVIC-----IACLISPYRKDR-DACRSMLPEGDFIEVFM  206 (269)
Q Consensus       150 --g~~~~----~~-----------~~~~~~l~~~a~~~~~~g~~~-----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~l  206 (269)
                        ++++.    +.           ...-.+...+...+...|+-.     +....++++++| .++|+++-+|+|  |.+
T Consensus       373 ygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~--i~L  450 (534)
T COG4172         373 YGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPEL--ILL  450 (534)
T ss_pred             CCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcE--EEe
Confidence              11111    00           000112223444555555532     333445666666 799999999999  999


Q ss_pred             eCChhHHHhcChhhHHHHHh
Q 024315          207 DVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       207 d~p~~~l~~R~~k~l~~~~r  226 (269)
                      |+|++.++.-.+....+.+|
T Consensus       451 DEPTSALD~SVQaQvv~LLr  470 (534)
T COG4172         451 DEPTSALDRSVQAQVLDLLR  470 (534)
T ss_pred             cCCchHhhHHHHHHHHHHHH
Confidence            99999999777666444433

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.41  E-value=5.6e-13  Score=125.19  Aligned_cols=143  Identities=20%  Similarity=0.180  Sum_probs=98.8

Q ss_pred             ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCe----ecCc----c---cc-cC
Q 024315           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD----NCRH----G---LN-RD  148 (269)
Q Consensus        81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~----~~~~----~---l~-~~  148 (269)
                      ++...++.+...+.++|.+++|++++|+|+||||||||+++|++.+ .+.+|.|+++|.    ++..    .   ++ ..
T Consensus        29 ~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~-~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~  107 (382)
T TIGR03415        29 EILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLN-PVSRGSVLVKDGDGSIDVANCDAATLRRLRTHR  107 (382)
T ss_pred             HHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCCcEEEECCEecccccccCCHHHHHHHhcCC
Confidence            4445566778889999999999999999999999999999999988 467899999985    2221    0   11 22


Q ss_pred             CCCChhh--------HHHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccE
Q 024315          149 LSFKAED--------RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIE  203 (269)
Q Consensus       149 ~g~~~~~--------~~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~  203 (269)
                      ++|..|+        ..+++..            .......+...++..    ....+++++++| ..+++++.++++  
T Consensus       108 i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~I--  185 (382)
T TIGR03415       108 VSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADI--  185 (382)
T ss_pred             EEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE--
Confidence            3332221        1122111            011223344445432    233456777777 699999999999  


Q ss_pred             EEEeCChhHHHhcChhhHHHHHh
Q 024315          204 VFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       204 i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      +++|+|+..++...++.+++.++
T Consensus       186 LLlDEPts~LD~~~r~~l~~~L~  208 (382)
T TIGR03415       186 LLMDEPFSALDPLIRTQLQDELL  208 (382)
T ss_pred             EEEECCCccCCHHHHHHHHHHHH
Confidence            99999999999999888776654

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.40  E-value=1.4e-12  Score=117.37  Aligned_cols=146  Identities=20%  Similarity=0.158  Sum_probs=95.2

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCC-------ccEEEECCeecCc----ccccC
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG-------KLTYILDGDNCRH----GLNRD  148 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~-------~g~i~l~g~~~~~----~l~~~  148 (269)
                      .++++.+......+++++.+++|++++|+|+||||||||+++|+|.+++..       +|.+.++|.++..    .++..
T Consensus         5 ~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~   84 (272)
T PRK13547          5 DHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARL   84 (272)
T ss_pred             EEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhh
Confidence            355666655667788999999999999999999999999999999885321       7999999987632    11111


Q ss_pred             CCCChhh--------HHHHHHH---------------H-HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhC---
Q 024315          149 LSFKAED--------RVENIRR---------------I-GEVAKLFADAGVIC----IACLISPYRKDR-DACRSML---  196 (269)
Q Consensus       149 ~g~~~~~--------~~~~~~~---------------l-~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll---  196 (269)
                      .+|.+++        ..+++..               . ......+...++..    .+...++++++| ..+++++   
T Consensus        85 ~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~  164 (272)
T PRK13547         85 RAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLW  164 (272)
T ss_pred             cEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccc
Confidence            1111111        1111100               0 01112233334322    233456666666 6888888   


Q ss_pred             ------CCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          197 ------PEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       197 ------~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                            .++++  +++|||+..++....+.+.+.+++
T Consensus       165 ~~~~~~~~p~l--llLDEPt~~LD~~~~~~l~~~l~~  199 (272)
T PRK13547        165 PPHDAAQPPRY--LLLDEPTAALDLAHQHRLLDTVRR  199 (272)
T ss_pred             cccccCCCCCE--EEEcCccccCCHHHHHHHHHHHHH
Confidence                  37788  999999999999998887766553

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.40  E-value=5.3e-13  Score=126.45  Aligned_cols=134  Identities=29%  Similarity=0.301  Sum_probs=100.0

Q ss_pred             eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhH-------HHH
Q 024315           91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDR-------VEN  159 (269)
Q Consensus        91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~-------~~~  159 (269)
                      ...+++|.+++|+.++|+||||||||||+|.|.+.. .+.+|.|++||-+++.    .+-+++||-+|+-       .++
T Consensus       351 il~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w-~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeN  429 (580)
T COG4618         351 ILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIW-PPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAEN  429 (580)
T ss_pred             ceecceeEecCCceEEEECCCCccHHHHHHHHHccc-ccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHH
Confidence            446779999999999999999999999999999988 5779999999988763    4566778888754       356


Q ss_pred             HHHHHH------HHHHHHhCCcce------------e---eccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcC
Q 024315          160 IRRIGE------VAKLFADAGVIC------------I---ACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD  217 (269)
Q Consensus       160 ~~~l~~------~a~~~~~~g~~~------------i---v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~  217 (269)
                      +.|+.+      +...-.-+++.+            +   ...++++++|| ..+|++..+|.+  |.+|||-..+|..-
T Consensus       430 IaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~l--vVLDEPNsNLD~~G  507 (580)
T COG4618         430 IARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFL--VVLDEPNSNLDSEG  507 (580)
T ss_pred             HHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcE--EEecCCCCCcchhH
Confidence            655531      111122223322            1   22346777777 699999999988  99999999999887


Q ss_pred             hhhHHHHHhc
Q 024315          218 PKGLYKLARE  227 (269)
Q Consensus       218 ~k~l~~~~r~  227 (269)
                      .+.+.+.+..
T Consensus       508 E~AL~~Ai~~  517 (580)
T COG4618         508 EAALAAAILA  517 (580)
T ss_pred             HHHHHHHHHH
Confidence            7777655443

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.40  E-value=1.1e-12  Score=115.42  Aligned_cols=138  Identities=17%  Similarity=0.163  Sum_probs=92.8

Q ss_pred             CceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc---ccccCCCCC-----------
Q 024315           87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH---GLNRDLSFK-----------  152 (269)
Q Consensus        87 ~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~---~l~~~~g~~-----------  152 (269)
                      +.....+++++.+++|++++|+|+||||||||+++|++.++ +.+|.|.++|.+...   ..+..++|.           
T Consensus        32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~  110 (236)
T cd03267          32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ-PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDL  110 (236)
T ss_pred             CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-CCceEEEECCEEccccchhhcccEEEEcCCccccCCCC
Confidence            34567788999999999999999999999999999999884 668999999876421   111122221           


Q ss_pred             -hhhHHHHHHHH---------HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcC
Q 024315          153 -AEDRVENIRRI---------GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD  217 (269)
Q Consensus       153 -~~~~~~~~~~l---------~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~  217 (269)
                       ..+.......+         ......+...++..    .+...++++++| ..+++++.++++  +++|||+..++...
T Consensus       111 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~l--lllDEPt~~LD~~~  188 (236)
T cd03267         111 PVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEI--LFLDEPTIGLDVVA  188 (236)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCE--EEEcCCCCCCCHHH
Confidence             11111100000         01122333334322    233456666666 688999999998  99999999999999


Q ss_pred             hhhHHHHHhc
Q 024315          218 PKGLYKLARE  227 (269)
Q Consensus       218 ~k~l~~~~r~  227 (269)
                      .+.+++.+++
T Consensus       189 ~~~l~~~l~~  198 (236)
T cd03267         189 QENIRNFLKE  198 (236)
T ss_pred             HHHHHHHHHH
Confidence            8888776553

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.40  E-value=1.3e-12  Score=126.90  Aligned_cols=144  Identities=21%  Similarity=0.221  Sum_probs=99.1

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-----ccccCCCCChh
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----GLNRDLSFKAE  154 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-----~l~~~~g~~~~  154 (269)
                      .++.+.+......+++++.+++|++++|+|+||||||||+++|++.+ .+.+|.|.++|.++..     .++..++|.+|
T Consensus         8 ~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q   86 (501)
T PRK11288          8 DGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNY-QPDAGSILIDGQEMRFASTTAALAAGVAIIYQ   86 (501)
T ss_pred             eeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCCEEEECCEECCCCCHHHHHhCCEEEEEe
Confidence            45666665556778999999999999999999999999999999987 4668999999977631     11222333222


Q ss_pred             hH--------HHHHH--------------H-HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEE
Q 024315          155 DR--------VENIR--------------R-IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFM  206 (269)
Q Consensus       155 ~~--------~~~~~--------------~-l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~l  206 (269)
                      +.        .+++.              . ..++...+...++..    .+...++++++| ..+++++.++++  +++
T Consensus        87 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~l--llL  164 (501)
T PRK11288         87 ELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARV--IAF  164 (501)
T ss_pred             chhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCE--EEE
Confidence            11        01100              0 011223344444422    234456777777 689999999999  999


Q ss_pred             eCChhHHHhcChhhHHHHHh
Q 024315          207 DVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       207 d~p~~~l~~R~~k~l~~~~r  226 (269)
                      |||+..++....+.+.+.++
T Consensus       165 DEPt~~LD~~~~~~l~~~l~  184 (501)
T PRK11288        165 DEPTSSLSAREIEQLFRVIR  184 (501)
T ss_pred             cCCCCCCCHHHHHHHHHHHH
Confidence            99999999998888776554

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.40  E-value=1.2e-12  Score=127.10  Aligned_cols=145  Identities=16%  Similarity=0.152  Sum_probs=99.0

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc-CCccEEEECCeecCcc-----cccCCCCCh
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW-RGKLTYILDGDNCRHG-----LNRDLSFKA  153 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~-~~~g~i~l~g~~~~~~-----l~~~~g~~~  153 (269)
                      .++.+.+......+++++.+.+|++++|+|+||||||||+++|++.+++ +.+|.|.++|.++...     .+..++|.+
T Consensus         5 ~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~   84 (500)
T TIGR02633         5 KGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIH   84 (500)
T ss_pred             EeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEe
Confidence            3555555556678899999999999999999999999999999998853 3589999999776420     112233332


Q ss_pred             hhH--------HHHHH---------------H-HHHHHHHHHhCCcce-----eeccCChHHHHH-HHHHHhCCCCCccE
Q 024315          154 EDR--------VENIR---------------R-IGEVAKLFADAGVIC-----IACLISPYRKDR-DACRSMLPEGDFIE  203 (269)
Q Consensus       154 ~~~--------~~~~~---------------~-l~~~a~~~~~~g~~~-----iv~~~~~~~~~r-~~ar~ll~~~~~~~  203 (269)
                      |+.        .+.+.               . .......+...++..     .+...|+++++| ..+++++.++++  
T Consensus        85 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~l--  162 (500)
T TIGR02633        85 QELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARL--  162 (500)
T ss_pred             eccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCE--
Confidence            221        00000               0 011223344444422     134457777777 688999999998  


Q ss_pred             EEEeCChhHHHhcChhhHHHHHh
Q 024315          204 VFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       204 i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      +++|||+..++....+.+++.++
T Consensus       163 llLDEPt~~LD~~~~~~l~~~l~  185 (500)
T TIGR02633       163 LILDEPSSSLTEKETEILLDIIR  185 (500)
T ss_pred             EEEeCCCCCCCHHHHHHHHHHHH
Confidence            99999999999998888776544

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.40  E-value=2.5e-12  Score=113.87  Aligned_cols=146  Identities=16%  Similarity=0.071  Sum_probs=96.1

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhh-ccCCccEEEECCeecCcc---ccc--CCCCCh
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHG---LNR--DLSFKA  153 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l-~~~~~g~i~l~g~~~~~~---l~~--~~g~~~  153 (269)
                      .++.+.+......+.+++.+++|++++|+|+||||||||+++|++.+ ..+.+|.+.++|.++...   .+.  .+++..
T Consensus        11 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~   90 (252)
T CHL00131         11 KNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAF   90 (252)
T ss_pred             EeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEe
Confidence            45555555556788899999999999999999999999999999973 246689999999876421   011  111211


Q ss_pred             hh--------HHHHHH-------------------HHHHHHHHHHhCCcc-----eeec-cCChHHHHH-HHHHHhCCCC
Q 024315          154 ED--------RVENIR-------------------RIGEVAKLFADAGVI-----CIAC-LISPYRKDR-DACRSMLPEG  199 (269)
Q Consensus       154 ~~--------~~~~~~-------------------~l~~~a~~~~~~g~~-----~iv~-~~~~~~~~r-~~ar~ll~~~  199 (269)
                      ++        ..+.+.                   ....+...+...++.     .... ..++++++| ..+++++.++
T Consensus        91 q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p  170 (252)
T CHL00131         91 QYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDS  170 (252)
T ss_pred             ccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCC
Confidence            11        011100                   001122233333332     1122 256666666 6899999999


Q ss_pred             CccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          200 DFIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       200 ~~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      ++  +++|+|+..++....+.+.+.+++
T Consensus       171 ~l--lllDEPt~~LD~~~~~~l~~~l~~  196 (252)
T CHL00131        171 EL--AILDETDSGLDIDALKIIAEGINK  196 (252)
T ss_pred             CE--EEEcCCcccCCHHHHHHHHHHHHH
Confidence            99  999999999999998887766553

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.40  E-value=1.4e-12  Score=116.08  Aligned_cols=145  Identities=18%  Similarity=0.176  Sum_probs=92.8

Q ss_pred             cceEEeeCc--eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCCh
Q 024315           80 TNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKA  153 (269)
Q Consensus        80 ~~~~~~~~~--v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~  153 (269)
                      .++.+.+..  ....+++++.+++|++++|+|+||||||||+++|++.+ ++.+|.+.++|.++..    .++..++|..
T Consensus        23 ~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~  101 (257)
T cd03288          23 HDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMV-DIFDGKIVIDGIDISKLPLHTLRSRLSIIL  101 (257)
T ss_pred             EEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHccc-CCCCCeEEECCEEhhhCCHHHHhhhEEEEC
Confidence            344444432  34567789999999999999999999999999999987 4678999999987642    1112222222


Q ss_pred             hhH-------HHHH--------HHHHH------HHHHHHhC--Cccee----eccCChHHHHH-HHHHHhCCCCCccEEE
Q 024315          154 EDR-------VENI--------RRIGE------VAKLFADA--GVICI----ACLISPYRKDR-DACRSMLPEGDFIEVF  205 (269)
Q Consensus       154 ~~~-------~~~~--------~~l~~------~a~~~~~~--g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~i~  205 (269)
                      ++.       .+.+        ..+..      +...+...  ++...    ....++++++| ..+++++.++++  ++
T Consensus       102 q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l--ll  179 (257)
T cd03288         102 QDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSI--LI  179 (257)
T ss_pred             CCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCE--EE
Confidence            211       0000        00000      11111111  11111    12345666666 689999999999  99


Q ss_pred             EeCChhHHHhcChhhHHHHHhc
Q 024315          206 MDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       206 ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      +|+|+..++....+.+++.++.
T Consensus       180 lDEPt~gLD~~~~~~l~~~l~~  201 (257)
T cd03288         180 MDEATASIDMATENILQKVVMT  201 (257)
T ss_pred             EeCCccCCCHHHHHHHHHHHHH
Confidence            9999999999888777766654

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.40  E-value=1.5e-12  Score=113.24  Aligned_cols=136  Identities=16%  Similarity=0.216  Sum_probs=90.0

Q ss_pred             eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCe----ecCc-------cc-ccCCCCChhhH
Q 024315           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD----NCRH-------GL-NRDLSFKAEDR  156 (269)
Q Consensus        89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~----~~~~-------~l-~~~~g~~~~~~  156 (269)
                      ....+.+++.+.+|++++|+|+||||||||+++|++.++ +.+|.|.+++.    ++..       .+ +..++|.+++.
T Consensus        21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~   99 (224)
T TIGR02324        21 LPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL-PDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFL   99 (224)
T ss_pred             eEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEeccc
Confidence            456788999999999999999999999999999999884 56899999742    3210       00 11223322221


Q ss_pred             H--------HHHH-----------HH-HHHHHHHHhCCcce-----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCCh
Q 024315          157 V--------ENIR-----------RI-GEVAKLFADAGVIC-----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPL  210 (269)
Q Consensus       157 ~--------~~~~-----------~l-~~~a~~~~~~g~~~-----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~  210 (269)
                      .        +.+.           .. ......+...++..     .+...++++++| ..+++++.++++  +++|+|+
T Consensus       100 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~l--lllDEPt  177 (224)
T TIGR02324       100 RVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPI--LLLDEPT  177 (224)
T ss_pred             ccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCE--EEEcCCc
Confidence            0        0100           00 11122333344321     233456666666 689999999998  9999999


Q ss_pred             hHHHhcChhhHHHHHhc
Q 024315          211 QVCEARDPKGLYKLARE  227 (269)
Q Consensus       211 ~~l~~R~~k~l~~~~r~  227 (269)
                      ..++....+.+.+.+++
T Consensus       178 ~~LD~~~~~~l~~~l~~  194 (224)
T TIGR02324       178 ASLDAANRQVVVELIAE  194 (224)
T ss_pred             ccCCHHHHHHHHHHHHH
Confidence            99999888887766553

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.40  E-value=1.2e-12  Score=115.11  Aligned_cols=143  Identities=20%  Similarity=0.269  Sum_probs=95.4

Q ss_pred             ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--ccccCCCCChhh---
Q 024315           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--GLNRDLSFKAED---  155 (269)
Q Consensus        81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--~l~~~~g~~~~~---  155 (269)
                      ++.+.+... ..+.+++++.+|++++|+|+||||||||+++|++.+ .+.+|.++++|.++..  ..+..+++.+++   
T Consensus         5 ~l~~~~~~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~-~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~   82 (235)
T cd03299           5 NLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFI-KPDSGKILLNGKDITNLPPEKRDISYVPQNYAL   82 (235)
T ss_pred             eEEEEeCCc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc-CCCceEEEECCEEcCcCChhHcCEEEEeecCcc
Confidence            455555432 577889999999999999999999999999999987 4668999999977642  011122222111   


Q ss_pred             -----HHHHHHH-----------H-HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHH
Q 024315          156 -----RVENIRR-----------I-GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVC  213 (269)
Q Consensus       156 -----~~~~~~~-----------l-~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l  213 (269)
                           ..+.+..           . .+....+...++..    .+...++++++| ..+++++.++++  +++|+|+..+
T Consensus        83 ~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l--lllDEPt~gL  160 (235)
T cd03299          83 FPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKI--LLLDEPFSAL  160 (235)
T ss_pred             CCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCE--EEECCCcccC
Confidence                 0111110           0 11222333344422    223456666666 689999999999  9999999999


Q ss_pred             HhcChhhHHHHHhc
Q 024315          214 EARDPKGLYKLARE  227 (269)
Q Consensus       214 ~~R~~k~l~~~~r~  227 (269)
                      +....+.+.+.+++
T Consensus       161 D~~~~~~l~~~l~~  174 (235)
T cd03299         161 DVRTKEKLREELKK  174 (235)
T ss_pred             CHHHHHHHHHHHHH
Confidence            99988887766554

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.40  E-value=1.4e-12  Score=127.39  Aligned_cols=146  Identities=17%  Similarity=0.215  Sum_probs=99.9

Q ss_pred             cceEEeeC----ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc----CCccEEEECCeecCcc-------
Q 024315           80 TNILWHKN----SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRHG-------  144 (269)
Q Consensus        80 ~~~~~~~~----~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~----~~~g~i~l~g~~~~~~-------  144 (269)
                      .++.+.+.    .....++++|.+.+|++++|+|+||||||||++.|++.+++    +.+|.|.++|.++...       
T Consensus         9 ~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~   88 (529)
T PRK15134          9 ENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRG   88 (529)
T ss_pred             eceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHH
Confidence            45555553    24577889999999999999999999999999999999864    2589999999876421       


Q ss_pred             cc-cCCCCChhhHH----------HHHH-------------HHHHHHHHHHhCCcce-------eeccCChHHHHH-HHH
Q 024315          145 LN-RDLSFKAEDRV----------ENIR-------------RIGEVAKLFADAGVIC-------IACLISPYRKDR-DAC  192 (269)
Q Consensus       145 l~-~~~g~~~~~~~----------~~~~-------------~l~~~a~~~~~~g~~~-------iv~~~~~~~~~r-~~a  192 (269)
                      .+ ..++|.+|+..          +.+.             ...++...+...++..       .+..+++++++| ..+
T Consensus        89 ~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iA  168 (529)
T PRK15134         89 VRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIA  168 (529)
T ss_pred             HhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHH
Confidence            11 23444333210          0000             0011223344444421       234567777777 699


Q ss_pred             HHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          193 RSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       193 r~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      ++++.++++  +++|||+..++....+.+.+.+++
T Consensus       169 raL~~~p~l--lllDEPt~~LD~~~~~~l~~~l~~  201 (529)
T PRK15134        169 MALLTRPEL--LIADEPTTALDVSVQAQILQLLRE  201 (529)
T ss_pred             HHHhcCCCE--EEEcCCCCccCHHHHHHHHHHHHH
Confidence            999999999  999999999999988887655543

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.40  E-value=1.1e-12  Score=132.13  Aligned_cols=134  Identities=20%  Similarity=0.224  Sum_probs=93.9

Q ss_pred             eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhH-------HHH
Q 024315           91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDR-------VEN  159 (269)
Q Consensus        91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~-------~~~  159 (269)
                      ..++.++.+++|+.++|+|+||||||||++.|+|.+ .+.+|.|.+||.++..    .++..+++.+|+.       +++
T Consensus       472 il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~-~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eN  550 (694)
T TIGR01846       472 VLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLY-TPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDN  550 (694)
T ss_pred             ccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHH
Confidence            456779999999999999999999999999999988 5678999999998763    3334444443321       111


Q ss_pred             HH------------HHHHH---HHHHH--hCCccee----eccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcC
Q 024315          160 IR------------RIGEV---AKLFA--DAGVICI----ACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD  217 (269)
Q Consensus       160 ~~------------~l~~~---a~~~~--~~g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~  217 (269)
                      +.            ...+.   .....  ..|+...    ....++++++| ..+|+++.++++  +++|||++.++...
T Consensus       551 i~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~i--lilDEpts~LD~~~  628 (694)
T TIGR01846       551 IALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRI--LIFDEATSALDYES  628 (694)
T ss_pred             HhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCE--EEEECCCcCCCHHH
Confidence            11            00000   01111  1123222    23457777777 699999999999  99999999999999


Q ss_pred             hhhHHHHHhc
Q 024315          218 PKGLYKLARE  227 (269)
Q Consensus       218 ~k~l~~~~r~  227 (269)
                      .+.+++.+++
T Consensus       629 ~~~i~~~l~~  638 (694)
T TIGR01846       629 EALIMRNMRE  638 (694)
T ss_pred             HHHHHHHHHH
Confidence            8887766654

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.40  E-value=8.4e-13  Score=111.00  Aligned_cols=128  Identities=20%  Similarity=0.294  Sum_probs=90.4

Q ss_pred             eCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-----------cc--cCCCC-
Q 024315           86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----------LN--RDLSF-  151 (269)
Q Consensus        86 ~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-----------l~--~~~g~-  151 (269)
                      ...+.+.+++||++.+|++++++|.||||||||++.|+|.+ +|.+|.+++++..+..+           +.  ++..+ 
T Consensus        23 r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi-~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~N  101 (267)
T COG4167          23 RQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMI-EPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLN  101 (267)
T ss_pred             hhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhccc-CCCCceEEECCccccccchHhhhhheeeeecCCccccC
Confidence            34677889999999999999999999999999999999988 57799999999876531           00  11112 


Q ss_pred             -------------------ChhhHHHHHHHHHHHHHHHHhCCcce-----eeccCChHHHHH-HHHHHhCCCCCccEEEE
Q 024315          152 -------------------KAEDRVENIRRIGEVAKLFADAGVIC-----IACLISPYRKDR-DACRSMLPEGDFIEVFM  206 (269)
Q Consensus       152 -------------------~~~~~~~~~~~l~~~a~~~~~~g~~~-----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~l  206 (269)
                                         .++.|.+      ++..-+...|+..     ...+.+..+++| ..+|+++-+|++  |..
T Consensus       102 PRl~iGqiLd~PL~l~T~~~~~~R~~------~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~i--IIa  173 (267)
T COG4167         102 PRLRIGQILDFPLRLNTDLEPEQRRK------QIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKI--IIA  173 (267)
T ss_pred             hhhhhhhHhcchhhhcccCChHHHHH------HHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcE--EEe
Confidence                               2222222      2222233334322     233445566777 689999999998  899


Q ss_pred             eCChhHHHhcChhhHH
Q 024315          207 DVPLQVCEARDPKGLY  222 (269)
Q Consensus       207 d~p~~~l~~R~~k~l~  222 (269)
                      |+.+..++.-.+-.+.
T Consensus       174 DeAl~~LD~smrsQl~  189 (267)
T COG4167         174 DEALASLDMSMRSQLI  189 (267)
T ss_pred             hhhhhhccHHHHHHHH
Confidence            9999999887766543

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.40  E-value=3.1e-12  Score=112.05  Aligned_cols=131  Identities=21%  Similarity=0.205  Sum_probs=87.9

Q ss_pred             cCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc------cccCCC----CChhhHHHH-HH
Q 024315           93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG------LNRDLS----FKAEDRVEN-IR  161 (269)
Q Consensus        93 ~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~------l~~~~g----~~~~~~~~~-~~  161 (269)
                      +.+++++.+|++++|+|+||||||||+++|++.+ .+.+|.+.++|.++...      +..+..    .+..+.... ..
T Consensus         2 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~   80 (230)
T TIGR01184         2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLA-QPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVD   80 (230)
T ss_pred             CceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHH
Confidence            4568899999999999999999999999999988 46689999999876421      000100    111111110 00


Q ss_pred             ---------H-HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315          162 ---------R-IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       162 ---------~-l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                               . .......+...++..    .+...++++++| ..+++++.++++  +++|||+..++....+.+.+.++
T Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l--llLDEPt~gLD~~~~~~l~~~l~  158 (230)
T TIGR01184        81 RVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKV--LLLDEPFGALDALTRGNLQEELM  158 (230)
T ss_pred             hcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEcCCCcCCCHHHHHHHHHHHH
Confidence                     0 001222333444422    233456677776 689999999999  99999999999998888766554

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK06762 hypothetical protein; Provisional

Probab=99.39  E-value=2.2e-12  Score=107.05  Aligned_cols=158  Identities=17%  Similarity=0.125  Sum_probs=94.0

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHHHHHHHHHHHHHhCCcceeecc
Q 024315          102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACL  181 (269)
Q Consensus       102 g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~l~~~a~~~~~~g~~~iv~~  181 (269)
                      +.+++|+|++||||||+++.|+..+.   .+.++++.|.+++.+...........   ...+.+........|..++++.
T Consensus         2 ~~li~i~G~~GsGKST~A~~L~~~l~---~~~~~i~~D~~r~~l~~~~~~~~~~~---~~~~~~~~~~~~~~g~~vild~   75 (166)
T PRK06762          2 TTLIIIRGNSGSGKTTIAKQLQERLG---RGTLLVSQDVVRRDMLRVKDGPGNLS---IDLIEQLVRYGLGHCEFVILEG   75 (166)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC---CCeEEecHHHHHHHhccccCCCCCcC---HHHHHHHHHHHHhCCCEEEEch
Confidence            46899999999999999999999873   35778898888764432211111011   1112222222334566666655


Q ss_pred             CChHHHHHHHHHHhCCC--CCccEEEEeCChhHHHhcChhhHHHHHhcCccccccccccccCCCCCCCeEEEcCCCcCHH
Q 024315          182 ISPYRKDRDACRSMLPE--GDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEVGVHVWYRFELA  259 (269)
Q Consensus       182 ~~~~~~~r~~ar~ll~~--~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~~i~~~~e~p~~~e~~id~~~~~~~~  259 (269)
                      .......+..++.+...  .++..++++.|.+.|.+|..++-.  ...-..+.+....+.++++..++.+|+|+ ..+++
T Consensus        76 ~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~  152 (166)
T PRK06762         76 ILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPK--SHEFGEDDMRRWWNPHDTLGVIGETIFTD-NLSLK  152 (166)
T ss_pred             hhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccc--cccCCHHHHHHHHhhcCCcCCCCeEEecC-CCCHH
Confidence            43333344444544432  256679999999999999855531  00000111222223335555567788885 68899


Q ss_pred             HHHH-HHhhc
Q 024315          260 ETWR-ITKWL  268 (269)
Q Consensus       260 ~~~~-i~~~~  268 (269)
                      ++.. |.+++
T Consensus       153 ~v~~~i~~~~  162 (166)
T PRK06762        153 DIFDAILTDI  162 (166)
T ss_pred             HHHHHHHHHh
Confidence            9988 87765

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.39  E-value=1.3e-12  Score=113.24  Aligned_cols=139  Identities=16%  Similarity=0.158  Sum_probs=89.5

Q ss_pred             eEEeeC-ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--------ccccCCCCC
Q 024315           82 ILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--------GLNRDLSFK  152 (269)
Q Consensus        82 ~~~~~~-~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--------~l~~~~g~~  152 (269)
                      +.+.+. .....+.+++++++|++++|+|+||||||||+++|++.+. +.+|.|.++|.++..        ..+..++|.
T Consensus         6 ~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~   84 (218)
T cd03290           6 GYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ-TLEGKVHWSNKNESEPSFEATRSRNRYSVAYA   84 (218)
T ss_pred             eEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-CCCCeEEECCcccccccccccchhhcceEEEE
Confidence            444443 3446788899999999999999999999999999999884 668999999875421        111222322


Q ss_pred             hhhH-------HHHHHH-----HHHHHHHHHhCCc---------------ceeeccCChHHHHH-HHHHHhCCCCCccEE
Q 024315          153 AEDR-------VENIRR-----IGEVAKLFADAGV---------------ICIACLISPYRKDR-DACRSMLPEGDFIEV  204 (269)
Q Consensus       153 ~~~~-------~~~~~~-----l~~~a~~~~~~g~---------------~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i  204 (269)
                      .++.       .+++..     ...........++               ...+...++++++| ..+++++.++++  +
T Consensus        85 ~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~i--l  162 (218)
T cd03290          85 AQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNI--V  162 (218)
T ss_pred             cCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCE--E
Confidence            2211       111110     0000111111111               01233456666666 699999999999  9


Q ss_pred             EEeCChhHHHhcChhhHHH
Q 024315          205 FMDVPLQVCEARDPKGLYK  223 (269)
Q Consensus       205 ~ld~p~~~l~~R~~k~l~~  223 (269)
                      ++|+|+..++....+.+.+
T Consensus       163 llDEPt~~LD~~~~~~l~~  181 (218)
T cd03290         163 FLDDPFSALDIHLSDHLMQ  181 (218)
T ss_pred             EEeCCccccCHHHHHHHHH
Confidence            9999999999887776654

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.39  E-value=9e-13  Score=129.90  Aligned_cols=134  Identities=18%  Similarity=0.245  Sum_probs=91.1

Q ss_pred             eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhH-------HHH
Q 024315           91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDR-------VEN  159 (269)
Q Consensus        91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~-------~~~  159 (269)
                      ..++.++++++|+.++|+|+||||||||++.|.|.+ +|.+|.|.++|.++..    .++..+++.+|+.       +++
T Consensus       330 ~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~-~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~N  408 (569)
T PRK10789        330 ALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHF-DVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANN  408 (569)
T ss_pred             cccCeeEEECCCCEEEEECCCCCCHHHHHHHHhccc-CCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHH
Confidence            456678999999999999999999999999999988 5678999999987642    1222223222211       111


Q ss_pred             H------------HHHHHHH---HHHH--hCCccee----eccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcC
Q 024315          160 I------------RRIGEVA---KLFA--DAGVICI----ACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD  217 (269)
Q Consensus       160 ~------------~~l~~~a---~~~~--~~g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~  217 (269)
                      +            ....+.+   ....  ..|+...    ....++++++| ..+|+++.++++  +++|||+..++...
T Consensus       409 i~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~i--lllDEpts~LD~~~  486 (569)
T PRK10789        409 IALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEI--LILDDALSAVDGRT  486 (569)
T ss_pred             HhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCE--EEEECccccCCHHH
Confidence            1            1101110   0011  1122221    23457777777 699999999999  99999999999999


Q ss_pred             hhhHHHHHhc
Q 024315          218 PKGLYKLARE  227 (269)
Q Consensus       218 ~k~l~~~~r~  227 (269)
                      .+.+.+.+++
T Consensus       487 ~~~i~~~l~~  496 (569)
T PRK10789        487 EHQILHNLRQ  496 (569)
T ss_pred             HHHHHHHHHH
Confidence            8887766654

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.39  E-value=1e-12  Score=130.01  Aligned_cols=134  Identities=16%  Similarity=0.179  Sum_probs=91.0

Q ss_pred             eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhH-------HHH
Q 024315           91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDR-------VEN  159 (269)
Q Consensus        91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~-------~~~  159 (269)
                      ..++.++.+++|+.++|+|+||||||||++.|+|.+ ++.+|.|.++|.++..    .++..+++.+|+.       .++
T Consensus       350 ~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~N  428 (585)
T TIGR01192       350 GVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVY-DPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIREN  428 (585)
T ss_pred             cccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCC-CCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHH
Confidence            356678999999999999999999999999999988 5678999999987642    1222233322221       111


Q ss_pred             H-------------HHHHH--HHHHHHh--CCcc----eeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcC
Q 024315          160 I-------------RRIGE--VAKLFAD--AGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD  217 (269)
Q Consensus       160 ~-------------~~l~~--~a~~~~~--~g~~----~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~  217 (269)
                      +             .....  .......  .|..    .-....++++++| ..+|+++.++++  +.+|||++.+|...
T Consensus       429 i~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~i--lilDEpts~LD~~~  506 (585)
T TIGR01192       429 IRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPI--LVLDEATSALDVET  506 (585)
T ss_pred             HhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCE--EEEECCccCCCHHH
Confidence            1             11000  0011111  1221    1233457777777 799999999999  99999999999999


Q ss_pred             hhhHHHHHhc
Q 024315          218 PKGLYKLARE  227 (269)
Q Consensus       218 ~k~l~~~~r~  227 (269)
                      .+.+++.+++
T Consensus       507 ~~~i~~~l~~  516 (585)
T TIGR01192       507 EARVKNAIDA  516 (585)
T ss_pred             HHHHHHHHHH
Confidence            8887766553

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.38  E-value=4.9e-13  Score=107.16  Aligned_cols=116  Identities=28%  Similarity=0.355  Sum_probs=76.5

Q ss_pred             cCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhH--------HHH-
Q 024315           93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDR--------VEN-  159 (269)
Q Consensus        93 ~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~--------~~~-  159 (269)
                      +++++.+.+|++++|+|+||||||||+++|.+.+. +.+|.+.+++.++..    ..+..+++.+++.        .+. 
T Consensus         2 ~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~-~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~   80 (137)
T PF00005_consen    2 KNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLP-PDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENE   80 (137)
T ss_dssp             EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSH-ESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHH
T ss_pred             CceEEEEcCCCEEEEEccCCCccccceeeeccccc-cccccccccccccccccccccccccccccccccccccccccccc
Confidence            35688999999999999999999999999999885 568999999998864    1222233322221        111 


Q ss_pred             -HHHHHHHHHHHHhCCc-ceee----ccCChHHHHH-HHHHHhCCCCCccEEEEeCChh
Q 024315          160 -IRRIGEVAKLFADAGV-ICIA----CLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQ  211 (269)
Q Consensus       160 -~~~l~~~a~~~~~~g~-~~iv----~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~  211 (269)
                       -.+..++...+..... ...+    ...++++++| ..+++++.++++  +++|+|++
T Consensus        81 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~l--lllDEPt~  137 (137)
T PF00005_consen   81 SDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKL--LLLDEPTN  137 (137)
T ss_dssp             HHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSE--EEEESTTT
T ss_pred             ccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCE--EEEeCCCC
Confidence             1111222222221111 1122    4556666666 699999999999  99999974

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.38  E-value=1.3e-12  Score=126.68  Aligned_cols=135  Identities=17%  Similarity=0.256  Sum_probs=92.1

Q ss_pred             eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-----ccccCCCCChhhHH-------
Q 024315           90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----GLNRDLSFKAEDRV-------  157 (269)
Q Consensus        90 ~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-----~l~~~~g~~~~~~~-------  157 (269)
                      ...+++++.+.+|++++|+|+||||||||++.|++.++++.+|.|.++|.++..     .++..++|.+|+..       
T Consensus       274 ~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~  353 (500)
T TIGR02633       274 KRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPI  353 (500)
T ss_pred             cccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCC
Confidence            456788999999999999999999999999999998854468999999976531     11222333333210       


Q ss_pred             ----HH--------H--------H-HHHHHHHHHHhCCcce-----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCCh
Q 024315          158 ----EN--------I--------R-RIGEVAKLFADAGVIC-----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPL  210 (269)
Q Consensus       158 ----~~--------~--------~-~l~~~a~~~~~~g~~~-----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~  210 (269)
                          +.        .        . .-..+...+...++..     .+...|+++++| ..+++++.++++  +++|||+
T Consensus       354 ~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~l--llLDEPt  431 (500)
T TIGR02633       354 LGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRV--LILDEPT  431 (500)
T ss_pred             CCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCE--EEEcCCC
Confidence                00        0        0 0011223344444421     234557777777 688999999998  9999999


Q ss_pred             hHHHhcChhhHHHHHh
Q 024315          211 QVCEARDPKGLYKLAR  226 (269)
Q Consensus       211 ~~l~~R~~k~l~~~~r  226 (269)
                      ..++......+++.++
T Consensus       432 ~~LD~~~~~~l~~~l~  447 (500)
T TIGR02633       432 RGVDVGAKYEIYKLIN  447 (500)
T ss_pred             CCcCHhHHHHHHHHHH
Confidence            9999988877664433

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.38  E-value=1.9e-12  Score=113.38  Aligned_cols=132  Identities=21%  Similarity=0.217  Sum_probs=88.0

Q ss_pred             cCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc---CCccEEEECCeecCcc-c-ccCCCCChhhHH----------
Q 024315           93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW---RGKLTYILDGDNCRHG-L-NRDLSFKAEDRV----------  157 (269)
Q Consensus        93 ~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~---~~~g~i~l~g~~~~~~-l-~~~~g~~~~~~~----------  157 (269)
                      +++++++.+|++++|+|+||||||||+++|+|.+.+   +.+|.|.++|.++... . +..++|..++..          
T Consensus         3 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~   82 (230)
T TIGR02770         3 QDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMG   82 (230)
T ss_pred             cceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHH
Confidence            567899999999999999999999999999998853   1689999999875321 1 112232222210          


Q ss_pred             HH----HHH--------HHHHHHHHHhCCcc-------eeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcC
Q 024315          158 EN----IRR--------IGEVAKLFADAGVI-------CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD  217 (269)
Q Consensus       158 ~~----~~~--------l~~~a~~~~~~g~~-------~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~  217 (269)
                      +.    ...        ...+...+...++.       ..+...++++++| ..+++++.++++  +++|+|+..++...
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~v--llLDEPt~~LD~~~  160 (230)
T TIGR02770        83 NHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPF--LIADEPTTDLDVVN  160 (230)
T ss_pred             HHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCE--EEEcCCccccCHHH
Confidence            00    000        00122233333442       1223346666666 689999999998  99999999999988


Q ss_pred             hhhHHHHHh
Q 024315          218 PKGLYKLAR  226 (269)
Q Consensus       218 ~k~l~~~~r  226 (269)
                      .+.+++.++
T Consensus       161 ~~~l~~~l~  169 (230)
T TIGR02770       161 QARVLKLLR  169 (230)
T ss_pred             HHHHHHHHH
Confidence            877766554

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.38  E-value=2.4e-12  Score=112.27  Aligned_cols=127  Identities=19%  Similarity=0.212  Sum_probs=84.8

Q ss_pred             eecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhh----------HHHHH------
Q 024315           97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED----------RVENI------  160 (269)
Q Consensus        97 l~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~----------~~~~~------  160 (269)
                      +.+.+|++++|+|+||||||||+++|++.+ .+.+|.+.++|.++.. .+..++|.+++          ..+++      
T Consensus         1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~-~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~   78 (223)
T TIGR03771         1 LSADKGELLGLLGPNGAGKTTLLRAILGLI-PPAKGTVKVAGASPGK-GWRHIGYVPQRHEFAWDFPISVAHTVMSGRTG   78 (223)
T ss_pred             CccCCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCccchH-hhCcEEEecccccccCCCCccHHHHHHhcccc
Confidence            467899999999999999999999999987 4668999999976521 11111111111          00110      


Q ss_pred             ----------HHHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHH
Q 024315          161 ----------RRIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (269)
Q Consensus       161 ----------~~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~  225 (269)
                                .....+...+...++..    .+...++++++| ..+++++.++++  +++|+|+..++....+.+++.+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l--lilDEP~~~LD~~~~~~l~~~l  156 (223)
T TIGR03771        79 HIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSV--LLLDEPFTGLDMPTQELLTELF  156 (223)
T ss_pred             ccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCcccCCHHHHHHHHHHH
Confidence                      00011222333334422    233456666666 699999999999  9999999999999988877666


Q ss_pred             hc
Q 024315          226 RE  227 (269)
Q Consensus       226 r~  227 (269)
                      ++
T Consensus       157 ~~  158 (223)
T TIGR03771       157 IE  158 (223)
T ss_pred             HH
Confidence            53

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.38  E-value=1.9e-12  Score=128.87  Aligned_cols=135  Identities=21%  Similarity=0.246  Sum_probs=95.3

Q ss_pred             eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-------ccccCCCCChhhH-----
Q 024315           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-------GLNRDLSFKAEDR-----  156 (269)
Q Consensus        89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-------~l~~~~g~~~~~~-----  156 (269)
                      +...++++|.+++|++++|+|+||||||||+++|++.++ +.+|.|.++|.++..       .++..++|..|+.     
T Consensus       337 ~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~-p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~  415 (623)
T PRK10261        337 VHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE-SQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLD  415 (623)
T ss_pred             eEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-CCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcC
Confidence            456788899999999999999999999999999999884 668999999987632       1222334333321     


Q ss_pred             -----HHHHH-------------HHHHHHHHHHhCCcc-e----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhH
Q 024315          157 -----VENIR-------------RIGEVAKLFADAGVI-C----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV  212 (269)
Q Consensus       157 -----~~~~~-------------~l~~~a~~~~~~g~~-~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~  212 (269)
                           .+.+.             ....+..++...++. .    .+..+|+++++| .++++++.++++  +++|||+..
T Consensus       416 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~l--lllDEPts~  493 (623)
T PRK10261        416 PRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKV--IIADEAVSA  493 (623)
T ss_pred             CCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCE--EEEeCCccc
Confidence                 01110             001122344445552 1    234557777777 699999999999  999999999


Q ss_pred             HHhcChhhHHHHHh
Q 024315          213 CEARDPKGLYKLAR  226 (269)
Q Consensus       213 l~~R~~k~l~~~~r  226 (269)
                      ++......+++.++
T Consensus       494 LD~~~~~~i~~ll~  507 (623)
T PRK10261        494 LDVSIRGQIINLLL  507 (623)
T ss_pred             CCHHHHHHHHHHHH
Confidence            99998888776653

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.38  E-value=1.4e-12  Score=112.00  Aligned_cols=130  Identities=21%  Similarity=0.228  Sum_probs=81.9

Q ss_pred             eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc---c--cc-----cCCCCChhhHHHH
Q 024315           90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH---G--LN-----RDLSFKAEDRVEN  159 (269)
Q Consensus        90 ~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~---~--l~-----~~~g~~~~~~~~~  159 (269)
                      ...+.+++++++|++++|+|+||||||||++.|++.+ ++.+|.|.++|. +..   .  +.     ..+.+......+.
T Consensus        19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~-~~~~G~i~~~g~-i~~~~q~~~l~~~t~~enl~~~~~~~~~~   96 (204)
T cd03250          19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGEL-EKLSGSVSVPGS-IAYVSQEPWIQNGTIRENILFGKPFDEER   96 (204)
T ss_pred             ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcC-CCCCCeEEEcCE-EEEEecCchhccCcHHHHhccCCCcCHHH
Confidence            4677889999999999999999999999999999987 466899999882 210   0  00     0011110000000


Q ss_pred             HHHHHHH---HHHHHhC--Ccc----eeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHH
Q 024315          160 IRRIGEV---AKLFADA--GVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK  223 (269)
Q Consensus       160 ~~~l~~~---a~~~~~~--g~~----~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~  223 (269)
                      .....+.   ...+...  +..    ......++++++| ..+++++.++++  +++|+|+..++....+.+++
T Consensus        97 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~l--lllDEP~~~LD~~~~~~l~~  168 (204)
T cd03250          97 YEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADI--YLLDDPLSAVDAHVGRHIFE  168 (204)
T ss_pred             HHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCE--EEEeCccccCCHHHHHHHHH
Confidence            1010000   0111110  111    1123345666666 699999999999  99999999999887776665

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.37  E-value=2.3e-12  Score=108.86  Aligned_cols=120  Identities=20%  Similarity=0.197  Sum_probs=82.7

Q ss_pred             ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHHHHHHHHH
Q 024315           88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVA  167 (269)
Q Consensus        88 ~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~l~~~a  167 (269)
                      .+.+.+..+|++++|++++|+||||||||||++++..     .+|.+.+++.... ..+..+.|..+  .          
T Consensus         7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~-----~~G~v~~~~~~~~-~~~~~~~~~~q--~----------   68 (176)
T cd03238           7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY-----ASGKARLISFLPK-FSRNKLIFIDQ--L----------   68 (176)
T ss_pred             eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh-----cCCcEEECCcccc-cccccEEEEhH--H----------
Confidence            3556788899999999999999999999999998842     2567777765221 11112334333  1          


Q ss_pred             HHHHhCCcc-----eeeccCChHHHHH-HHHHHhCCC--CCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          168 KLFADAGVI-----CIACLISPYRKDR-DACRSMLPE--GDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       168 ~~~~~~g~~-----~iv~~~~~~~~~r-~~ar~ll~~--~~~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      ..+...++.     ......++++++| ..+++++.+  +++  +++|||+..++....+.+++.+++
T Consensus        69 ~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~l--lLlDEPt~~LD~~~~~~l~~~l~~  134 (176)
T cd03238          69 QFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTL--FILDEPSTGLHQQDINQLLEVIKG  134 (176)
T ss_pred             HHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCE--EEEeCCcccCCHHHHHHHHHHHHH
Confidence            112222321     2233456666666 688999999  888  999999999999998887766553

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae

Probab=99.37  E-value=4.9e-12  Score=106.50  Aligned_cols=157  Identities=22%  Similarity=0.150  Sum_probs=97.7

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccc-----cCCCCCh--------hhHHHHHHHHHHHHH
Q 024315          102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN-----RDLSFKA--------EDRVENIRRIGEVAK  168 (269)
Q Consensus       102 g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~-----~~~g~~~--------~~~~~~~~~l~~~a~  168 (269)
                      |.+|.|.|+|-|||||++++|...+..+   -+.+..|.+...+.     ...++..        ......+........
T Consensus         1 g~iI~LNG~sSSGKSsia~~Lq~~~~~p---~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ia   77 (174)
T PF07931_consen    1 GQIIILNGPSSSGKSSIARALQERLPEP---WLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRLYAAMHAAIA   77 (174)
T ss_dssp             --EEEEEE-TTSSHHHHHHHHHHHSSS----EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHhCcCC---eEEEecChHHhhcCcccccCCccccccccCCchhHHHHHHHHHHHHHHH
Confidence            6799999999999999999999988533   56777776654222     1223321        223344555556667


Q ss_pred             HHHhCCcceeeccCChHHH-HHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCccccccccc-cccCCCCCC
Q 024315          169 LFADAGVICIACLISPYRK-DRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGID-DPYEPPLNC  246 (269)
Q Consensus       169 ~~~~~g~~~iv~~~~~~~~-~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~~i~-~~~e~p~~~  246 (269)
                      .+.+.|..+|++....... -.+.+++++...++..|-+-||++++++|.      ..|..+..+.+... +.-+.+...
T Consensus        78 a~a~aG~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE------~~RgDR~~G~a~~q~~~Vh~~~~Y  151 (174)
T PF07931_consen   78 AMARAGNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEILERRE------RARGDRPIGLAAWQAEHVHEGGRY  151 (174)
T ss_dssp             HHHHTT-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHH------HHHTSSSTTHHHHHTTGGGTT---
T ss_pred             HHHhCCCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECCHHHHHHHH------HhcCCcchHHHHHHHhhcccCCCC
Confidence            7889999998876543333 356777777777777789999999999987      55655555543222 212334457


Q ss_pred             CeEEEcCCCcCHHHHHH-HHhhc
Q 024315          247 EVGVHVWYRFELAETWR-ITKWL  268 (269)
Q Consensus       247 e~~id~~~~~~~~~~~~-i~~~~  268 (269)
                      |+.|||+ .+++++|+. |.+.|
T Consensus       152 DleVDTs-~~sp~ecA~~I~~~~  173 (174)
T PF07931_consen  152 DLEVDTS-ATSPEECAREILARL  173 (174)
T ss_dssp             SEEEETT-SS-HHHHHHHHHTT-
T ss_pred             CEEEECC-CCCHHHHHHHHHHHh
Confidence            8999995 889999999 77655

Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.37  E-value=1.8e-12  Score=126.05  Aligned_cols=135  Identities=20%  Similarity=0.294  Sum_probs=92.3

Q ss_pred             eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-----ccccCCCCChhhH--------
Q 024315           90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----GLNRDLSFKAEDR--------  156 (269)
Q Consensus        90 ~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-----~l~~~~g~~~~~~--------  156 (269)
                      ...++++|++++|++++|+|+||||||||++.|++.++++.+|.|.++|.++..     ..+..++|.+|+.        
T Consensus       276 ~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~  355 (506)
T PRK13549        276 KRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPV  355 (506)
T ss_pred             ccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCC
Confidence            456778999999999999999999999999999998853468999999976531     1112233333221        


Q ss_pred             ---HHHHH-----H-----------H-HHHHHHHHhCCcc-e----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCCh
Q 024315          157 ---VENIR-----R-----------I-GEVAKLFADAGVI-C----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPL  210 (269)
Q Consensus       157 ---~~~~~-----~-----------l-~~~a~~~~~~g~~-~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~  210 (269)
                         .+.+.     .           . ..+...+...++. .    .+..+|+++++| ..+++++.++++  +++|||+
T Consensus       356 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~l--llLDEPt  433 (506)
T PRK13549        356 MGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKI--LILDEPT  433 (506)
T ss_pred             CCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCE--EEEcCCC
Confidence               00000     0           0 1122334444442 1    234557777777 688999999999  9999999


Q ss_pred             hHHHhcChhhHHHHHh
Q 024315          211 QVCEARDPKGLYKLAR  226 (269)
Q Consensus       211 ~~l~~R~~k~l~~~~r  226 (269)
                      ..++....+.+++.++
T Consensus       434 ~~LD~~~~~~l~~~l~  449 (506)
T PRK13549        434 RGIDVGAKYEIYKLIN  449 (506)
T ss_pred             CCcCHhHHHHHHHHHH
Confidence            9999998888665544

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.37  E-value=3.1e-12  Score=114.06  Aligned_cols=144  Identities=19%  Similarity=0.235  Sum_probs=92.4

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCcc------EEEECCeecCc----ccccCC
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKL------TYILDGDNCRH----GLNRDL  149 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g------~i~l~g~~~~~----~l~~~~  149 (269)
                      .++.+.++.......+++.+.+|++++|+|+||||||||++.|+|.+. +.+|      .+.++|.++..    ..+..+
T Consensus        14 ~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~-~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i   92 (257)
T PRK14246         14 SRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE-IYDSKIKVDGKVLYFGKDIFQIDAIKLRKEV   92 (257)
T ss_pred             eeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCcCceeEcCEEEECCcccccCCHHHHhcce
Confidence            456667767777889999999999999999999999999999999875 4454      44444444321    111122


Q ss_pred             CCChhh--------HHHHHHH------------H-HHHHHHHHhCCcc--------eeeccCChHHHHH-HHHHHhCCCC
Q 024315          150 SFKAED--------RVENIRR------------I-GEVAKLFADAGVI--------CIACLISPYRKDR-DACRSMLPEG  199 (269)
Q Consensus       150 g~~~~~--------~~~~~~~------------l-~~~a~~~~~~g~~--------~iv~~~~~~~~~r-~~ar~ll~~~  199 (269)
                      +|.+++        ..+++..            . ......+...++.        ......++++++| ..+++++.++
T Consensus        93 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P  172 (257)
T PRK14246         93 GMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKP  172 (257)
T ss_pred             EEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence            222211        0111110            0 0112233333432        1223345566666 6999999999


Q ss_pred             CccEEEEeCChhHHHhcChhhHHHHHh
Q 024315          200 DFIEVFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       200 ~~~~i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      ++  +++|+|+..++....+.+.+.++
T Consensus       173 ~l--lllDEPt~~LD~~~~~~l~~~l~  197 (257)
T PRK14246        173 KV--LLMDEPTSMIDIVNSQAIEKLIT  197 (257)
T ss_pred             CE--EEEcCCCccCCHHHHHHHHHHHH
Confidence            99  99999999999888877776654

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.37  E-value=2.6e-12  Score=124.77  Aligned_cols=143  Identities=22%  Similarity=0.311  Sum_probs=98.2

Q ss_pred             eEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-----ccccCCCCChhhH
Q 024315           82 ILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----GLNRDLSFKAEDR  156 (269)
Q Consensus        82 ~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-----~l~~~~g~~~~~~  156 (269)
                      +++.+..+...+.+++.+.+|++++|+|+||||||||++.|++.+. +.+|.|.++|.++..     .++..++|.+|+.
T Consensus       258 l~~~~l~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~-p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~  336 (501)
T PRK10762        258 LKVDNLSGPGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP-RTSGYVTLDGHEVVTRSPQDGLANGIVYISEDR  336 (501)
T ss_pred             EEEeCcccCCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC-CCceEEEECCEECCCCCHHHHHHCCCEEecCcc
Confidence            4455544556789999999999999999999999999999999884 668999999976532     1122344433331


Q ss_pred             -----------HHHHH-----------------H-HHHHHHHHHhCCcc-e----eeccCChHHHHH-HHHHHhCCCCCc
Q 024315          157 -----------VENIR-----------------R-IGEVAKLFADAGVI-C----IACLISPYRKDR-DACRSMLPEGDF  201 (269)
Q Consensus       157 -----------~~~~~-----------------~-l~~~a~~~~~~g~~-~----iv~~~~~~~~~r-~~ar~ll~~~~~  201 (269)
                                 .+.+.                 . ..+....+...++. .    .+...|+++++| ..+++++.++++
T Consensus       337 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~l  416 (501)
T PRK10762        337 KRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKV  416 (501)
T ss_pred             ccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCE
Confidence                       01110                 0 01122334444442 1    233456777777 689999999998


Q ss_pred             cEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          202 IEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       202 ~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                        +++|||+..++....+.+.+.+++
T Consensus       417 --llLDEPt~~LD~~~~~~l~~~l~~  440 (501)
T PRK10762        417 --LILDEPTRGVDVGAKKEIYQLINQ  440 (501)
T ss_pred             --EEEcCCCCCCCHhHHHHHHHHHHH
Confidence              999999999999988887666543

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=99.37  E-value=8e-12  Score=103.40  Aligned_cols=149  Identities=21%  Similarity=0.266  Sum_probs=91.5

Q ss_pred             EEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-----cccCCCCChhhHHHHHHHHHHHHHHHHhCCcceee
Q 024315          105 IWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIA  179 (269)
Q Consensus       105 i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-----l~~~~g~~~~~~~~~~~~l~~~a~~~~~~g~~~iv  179 (269)
                      +.|+|++||||||+++.|++.+.     .+++++|++...     ...+.++..++...++..+.+.+..+...+...++
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~-----~~~v~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Vi   75 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLG-----AKFIEGDDLHPAANIEKMSAGIPLNDDDRWPWLQNLNDASTAAAAKNKVGII   75 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcC-----CeEEeCccccChHHHHHHHcCCCCChhhHHHHHHHHHHHHHHHHhcCCCEEE
Confidence            46899999999999999999873     467899887432     11223445555556666665555545455554566


Q ss_pred             ccCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCcc---ccccccccccCCCCC---CCeEEEcC
Q 024315          180 CLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKV---KGFTGIDDPYEPPLN---CEVGVHVW  253 (269)
Q Consensus       180 ~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~---~~~~~i~~~~e~p~~---~e~~id~~  253 (269)
                      +.+...+..|+.++..  .+.+..+++++|.+.|.+|..+      |.+..   ..+..+...++.|..   .-.+||++
T Consensus        76 ~~t~~~~~~r~~~~~~--~~~~~~i~l~~~~e~~~~R~~~------R~~~~~~~~~i~~~~~~~~~~~~~e~~~~~id~~  147 (163)
T TIGR01313        76 TCSALKRHYRDILREA--EPNLHFIYLSGDKDVILERMKA------RKGHFMKADMLESQFAALEEPLADETDVLRVDID  147 (163)
T ss_pred             EecccHHHHHHHHHhc--CCCEEEEEEeCCHHHHHHHHHh------ccCCCCCHHHHHHHHHHhCCCCCCCCceEEEECC
Confidence            6665556666666632  2456668999999999998843      33321   112222233455532   33678874


Q ss_pred             CCcCHHHHHH-HHhhc
Q 024315          254 YRFELAETWR-ITKWL  268 (269)
Q Consensus       254 ~~~~~~~~~~-i~~~~  268 (269)
                        -+++++.. |.+.|
T Consensus       148 --~~~~~~~~~~~~~~  161 (163)
T TIGR01313       148 --QPLEGVEEDCIAVV  161 (163)
T ss_pred             --CCHHHHHHHHHHHH
Confidence              44656555 65543

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.37  E-value=3e-12  Score=124.86  Aligned_cols=145  Identities=19%  Similarity=0.192  Sum_probs=96.0

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhc-cCCccEEEEC---------------------
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILD---------------------  137 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~-~~~~g~i~l~---------------------  137 (269)
                      .++++.+......+.+++.+.+|++++|+|+||||||||+++|++.+. .+.+|.|.++                     
T Consensus         4 ~~l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~   83 (520)
T TIGR03269         4 KNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCP   83 (520)
T ss_pred             EEEEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccc
Confidence            356666656667889999999999999999999999999999999863 4668888886                     


Q ss_pred             --CeecC--------------cccccCCCCChhh---------HHHHHHH------------HHHHHHHHHhCCcce---
Q 024315          138 --GDNCR--------------HGLNRDLSFKAED---------RVENIRR------------IGEVAKLFADAGVIC---  177 (269)
Q Consensus       138 --g~~~~--------------~~l~~~~g~~~~~---------~~~~~~~------------l~~~a~~~~~~g~~~---  177 (269)
                        |.++.              ..++..+++..++         ..+.+..            ...+...+...++..   
T Consensus        84 ~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~  163 (520)
T TIGR03269        84 VCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRIT  163 (520)
T ss_pred             cccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh
Confidence              22110              0011122322221         0111100            012223344445422   


Q ss_pred             -eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315          178 -IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       178 -iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                       .+...++++++| ..+++++.++++  +++|||+..++....+.+.+.++
T Consensus       164 ~~~~~LSgGq~qrv~iA~al~~~p~l--llLDEPt~~LD~~~~~~l~~~l~  212 (520)
T TIGR03269       164 HIARDLSGGEKQRVVLARQLAKEPFL--FLADEPTGTLDPQTAKLVHNALE  212 (520)
T ss_pred             cCcccCCHHHHHHHHHHHHHhcCCCE--EEeeCCcccCCHHHHHHHHHHHH
Confidence             234557777777 699999999999  99999999999999888654443

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=99.36  E-value=5.1e-12  Score=103.06  Aligned_cols=131  Identities=27%  Similarity=0.336  Sum_probs=85.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-----cccCCCCChhhHHHHHHHHHHHHHH-HHhCCcce
Q 024315          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAEDRVENIRRIGEVAKL-FADAGVIC  177 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-----l~~~~g~~~~~~~~~~~~l~~~a~~-~~~~g~~~  177 (269)
                      +++|+|++||||||+++.|+..+.     ..++++|.++..     ...+..+...+...+...+.+.... +...+..+
T Consensus         1 li~l~G~~GsGKST~a~~l~~~~~-----~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v   75 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAERLG-----APFIDGDDLHPPANIAKMAAGIPLNDEDRWPWLQALTDALLAKLASAGEGV   75 (150)
T ss_pred             CEEEEcCCCCCHHHHHHHHHhhcC-----CEEEeCcccccHHHHHHHHcCCCCCccchhhHHHHHHHHHHHHHHhCCCCE
Confidence            478999999999999999999753     457888888753     1222334444344444444333222 22345556


Q ss_pred             eeccCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCcccc---ccccccccCCCCC
Q 024315          178 IACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKG---FTGIDDPYEPPLN  245 (269)
Q Consensus       178 iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~---~~~i~~~~e~p~~  245 (269)
                      +++.....+..++.+++++....+..+++++|.+.+.+|..+      |.++..+   +..+.+.||+|++
T Consensus        76 Vid~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~------R~~~~~~~~~~~~~~~~~~~p~~  140 (150)
T cd02021          76 VVACSALKRIYRDILRGGAANPRVRFVHLDGPREVLAERLAA------RKGHFMPADLLDSQFETLEPPGE  140 (150)
T ss_pred             EEEeccccHHHHHHHHhcCCCCCEEEEEEECCHHHHHHHHHh------cccCCCCHHHHHHHHHHhcCCCC
Confidence            666665566777778777633456679999999999998843      3344322   4455578899986

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.36  E-value=1.7e-12  Score=125.24  Aligned_cols=134  Identities=25%  Similarity=0.292  Sum_probs=92.1

Q ss_pred             ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC--c----ccc---------cCCCCC
Q 024315           88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR--H----GLN---------RDLSFK  152 (269)
Q Consensus        88 ~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~--~----~l~---------~~~g~~  152 (269)
                      .+.+.+++||.+.+||+++|+|+||||||||+++|++++. |.+|.+.++|.++.  .    .++         +..+++
T Consensus       303 ~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~-P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLn  381 (539)
T COG1123         303 EVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLP-PSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLN  381 (539)
T ss_pred             ceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEEeCcccccccchhhhhhhheEEEEeCcccccC
Confidence            4778899999999999999999999999999999999885 57899999997621  0    011         111122


Q ss_pred             hhhH-----HHHH---------HHHHHHHHHHHhCCcce-----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhH
Q 024315          153 AEDR-----VENI---------RRIGEVAKLFADAGVIC-----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV  212 (269)
Q Consensus       153 ~~~~-----~~~~---------~~l~~~a~~~~~~g~~~-----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~  212 (269)
                      +...     .+-+         .+-..+..++..-++..     .....|+++++| .++|+++.+|++  +.+|||+..
T Consensus       382 Pr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~l--li~DEp~Sa  459 (539)
T COG1123         382 PRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKL--LILDEPVSA  459 (539)
T ss_pred             ccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCE--EEecCCccc
Confidence            1100     0000         01112344444444432     234457778888 699999999999  999999999


Q ss_pred             HHhcChhhHHHH
Q 024315          213 CEARDPKGLYKL  224 (269)
Q Consensus       213 l~~R~~k~l~~~  224 (269)
                      ++.-......+.
T Consensus       460 LDvsvqa~VlnL  471 (539)
T COG1123         460 LDVSVQAQVLNL  471 (539)
T ss_pred             cCHHHHHHHHHH
Confidence            998887764433

>PLN03211 ABC transporter G-25; Provisional

Probab=99.36  E-value=1.9e-12  Score=129.48  Aligned_cols=143  Identities=19%  Similarity=0.149  Sum_probs=96.8

Q ss_pred             eEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccC-CccEEEECCeecCcccccCCCCChhhH----
Q 024315           82 ILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR-GKLTYILDGDNCRHGLNRDLSFKAEDR----  156 (269)
Q Consensus        82 ~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~-~~g~i~l~g~~~~~~l~~~~g~~~~~~----  156 (269)
                      +...+......+++++.+++|++++|+||||||||||+++|+|.+.+. .+|.|.++|.++.....+.++|..|+.    
T Consensus        74 l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~  153 (659)
T PLN03211         74 ETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYP  153 (659)
T ss_pred             ccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCC
Confidence            344444566788899999999999999999999999999999988532 379999999876432222233333211    


Q ss_pred             ----HHHHHH---------------HHHHHHHHHhCCccee---------eccCChHHHHH-HHHHHhCCCCCccEEEEe
Q 024315          157 ----VENIRR---------------IGEVAKLFADAGVICI---------ACLISPYRKDR-DACRSMLPEGDFIEVFMD  207 (269)
Q Consensus       157 ----~~~~~~---------------l~~~a~~~~~~g~~~i---------v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld  207 (269)
                          .+.+..               ...+..++...|+...         ....++++++| ..+++++.++++  +++|
T Consensus       154 ~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~i--LlLD  231 (659)
T PLN03211        154 HLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL--LILD  231 (659)
T ss_pred             cCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCE--EEEe
Confidence                111110               0112233444454221         22356666666 699999999999  9999


Q ss_pred             CChhHHHhcChhhHHHHHh
Q 024315          208 VPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       208 ~p~~~l~~R~~k~l~~~~r  226 (269)
                      ||+..+|......+.+.++
T Consensus       232 EPtsgLD~~~~~~l~~~L~  250 (659)
T PLN03211        232 EPTSGLDATAAYRLVLTLG  250 (659)
T ss_pred             CCCCCcCHHHHHHHHHHHH
Confidence            9999999988877665544

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.36  E-value=2.7e-12  Score=107.19  Aligned_cols=143  Identities=20%  Similarity=0.182  Sum_probs=93.6

Q ss_pred             ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec--Cc-----------cccc
Q 024315           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC--RH-----------GLNR  147 (269)
Q Consensus        81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~--~~-----------~l~~  147 (269)
                      +++..+++..-..++||.+.+||+++|+|+||||||||+++|.+.+. |..|++....++-  +.           -++.
T Consensus        11 ~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~-p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RT   89 (258)
T COG4107          11 GLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLT-PDAGTVTYRMRDGQPRDLYTMSEAERRRLLRT   89 (258)
T ss_pred             hhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccC-CCCCeEEEEcCCCCchhHhhhchHHHHHHhhh
Confidence            34444556666678899999999999999999999999999999994 5577766554221  10           1234


Q ss_pred             CCCCChhhHH----------------------HHHHHHHHHHHHH-Hh----CCcce-ee-ccCChHHHHHHHHHHhCCC
Q 024315          148 DLSFKAEDRV----------------------ENIRRIGEVAKLF-AD----AGVIC-IA-CLISPYRKDRDACRSMLPE  198 (269)
Q Consensus       148 ~~g~~~~~~~----------------------~~~~~l~~~a~~~-~~----~g~~~-iv-~~~~~~~~~r~~ar~ll~~  198 (269)
                      +|||..|..+                      +.+..+.+.+..+ .+    ...+. .. +|+.+.++..+++|.++..
T Consensus        90 eWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~  169 (258)
T COG4107          90 EWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTR  169 (258)
T ss_pred             ccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccC
Confidence            5555544221                      2222232322221 11    11111 22 3444555555899999999


Q ss_pred             CCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315          199 GDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       199 ~~~~~i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      +.+  +|+|+|+..++--...++.+..|
T Consensus       170 PrL--vfMDEPTGGLDVSVQARLLDllr  195 (258)
T COG4107         170 PRL--VFMDEPTGGLDVSVQARLLDLLR  195 (258)
T ss_pred             Cce--EEecCCCCCcchhhHHHHHHHHH
Confidence            998  99999999999888888776655

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.36  E-value=4e-12  Score=123.03  Aligned_cols=146  Identities=14%  Similarity=0.081  Sum_probs=97.5

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-----ccccCCCCChh
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----GLNRDLSFKAE  154 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-----~l~~~~g~~~~  154 (269)
                      .++.+.+......+++++.+++|++++|+|+||||||||+++|+|.++++.+|.|.++|.++..     ..+..++|..+
T Consensus       264 ~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q  343 (490)
T PRK10938        264 NNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSS  343 (490)
T ss_pred             eceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECH
Confidence            4555555555567889999999999999999999999999999997632257999999865421     11223444443


Q ss_pred             hHH----------HHHH----------------HHHHHHHHHHhCCcce-e----eccCChHHHHH-HHHHHhCCCCCcc
Q 024315          155 DRV----------ENIR----------------RIGEVAKLFADAGVIC-I----ACLISPYRKDR-DACRSMLPEGDFI  202 (269)
Q Consensus       155 ~~~----------~~~~----------------~l~~~a~~~~~~g~~~-i----v~~~~~~~~~r-~~ar~ll~~~~~~  202 (269)
                      +..          +...                .-..+...+...++.. .    +...++++++| ..+++++.++++ 
T Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~l-  422 (490)
T PRK10938        344 SLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTL-  422 (490)
T ss_pred             HHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCE-
Confidence            211          0000                0001222333444432 1    23456667776 689999999999 


Q ss_pred             EEEEeCChhHHHhcChhhHHHHHhc
Q 024315          203 EVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       203 ~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                       +++|||+..++....+.+++.+++
T Consensus       423 -llLDEPt~gLD~~~~~~l~~~L~~  446 (490)
T PRK10938        423 -LILDEPLQGLDPLNRQLVRRFVDV  446 (490)
T ss_pred             -EEEcCccccCCHHHHHHHHHHHHH
Confidence             999999999999988887765543

>PLN03130 ABC transporter C family member; Provisional

Probab=99.35  E-value=1.5e-12  Score=141.06  Aligned_cols=144  Identities=16%  Similarity=0.171  Sum_probs=99.7

Q ss_pred             ceEEeeCceee-------ccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCC
Q 024315           81 NILWHKNSVDK-------RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDL  149 (269)
Q Consensus        81 ~~~~~~~~v~~-------~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~  149 (269)
                      .+++++..++|       .++.++++++|+.++|+|+||||||||+++|.|++ ++.+|.|.+||.++++    .+++.+
T Consensus      1237 ~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~-~p~~G~I~IDG~dI~~i~l~~LR~~I 1315 (1622)
T PLN03130       1237 SIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIV-ELERGRILIDGCDISKFGLMDLRKVL 1315 (1622)
T ss_pred             cEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCCceEEECCEecccCCHHHHHhcc
Confidence            34555444444       45669999999999999999999999999999988 5778999999999864    445555


Q ss_pred             CCChhhH-------HHHHHHH-----HHHHHHHHh-----------CCccee----eccCChHHHHH-HHHHHhCCCCCc
Q 024315          150 SFKAEDR-------VENIRRI-----GEVAKLFAD-----------AGVICI----ACLISPYRKDR-DACRSMLPEGDF  201 (269)
Q Consensus       150 g~~~~~~-------~~~~~~l-----~~~a~~~~~-----------~g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~  201 (269)
                      ++.+|+-       ++++...     .++...+..           .|+...    ....+++++|| ..+|+++.++++
T Consensus      1316 siVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~I 1395 (1622)
T PLN03130       1316 GIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKI 1395 (1622)
T ss_pred             EEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCE
Confidence            5544432       1111100     011111111           233222    23457777777 699999999999


Q ss_pred             cEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          202 IEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       202 ~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                        +.+||++..+|....+.+.+.+++
T Consensus      1396 --LILDEATSaLD~~Te~~Iq~~I~~ 1419 (1622)
T PLN03130       1396 --LVLDEATAAVDVRTDALIQKTIRE 1419 (1622)
T ss_pred             --EEEECCCCCCCHHHHHHHHHHHHH
Confidence              999999999999888777766664

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.35  E-value=4.5e-12  Score=123.45  Aligned_cols=134  Identities=19%  Similarity=0.242  Sum_probs=93.0

Q ss_pred             eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-----cccCCCCChhhH--------
Q 024315           90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAEDR--------  156 (269)
Q Consensus        90 ~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-----l~~~~g~~~~~~--------  156 (269)
                      ...+++++.+++|++++|+|+||||||||++.|++.+ .+.+|.|.++|.++...     .+..++|.+++.        
T Consensus       277 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~-~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~  355 (510)
T PRK15439        277 EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLR-PARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLD  355 (510)
T ss_pred             CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC-CCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCC
Confidence            3468899999999999999999999999999999987 46689999999876321     122334433321        


Q ss_pred             ---HHHHH--------------HH-HHHHHHHHhCCcc-e----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhH
Q 024315          157 ---VENIR--------------RI-GEVAKLFADAGVI-C----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV  212 (269)
Q Consensus       157 ---~~~~~--------------~l-~~~a~~~~~~g~~-~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~  212 (269)
                         .+.+.              .. ..+...+...++. .    .+..+++++++| ..+++++.++++  +++|||+..
T Consensus       356 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~l--LlLDEPt~g  433 (510)
T PRK15439        356 APLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQL--LIVDEPTRG  433 (510)
T ss_pred             CcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCE--EEECCCCcC
Confidence               01100              00 0122333444442 1    234456677766 688999999999  999999999


Q ss_pred             HHhcChhhHHHHHh
Q 024315          213 CEARDPKGLYKLAR  226 (269)
Q Consensus       213 l~~R~~k~l~~~~r  226 (269)
                      ++....+.+++.++
T Consensus       434 LD~~~~~~l~~~l~  447 (510)
T PRK15439        434 VDVSARNDIYQLIR  447 (510)
T ss_pred             cChhHHHHHHHHHH
Confidence            99999888776654

>PLN03232 ABC transporter C family member; Provisional

Probab=99.34  E-value=2.2e-12  Score=139.18  Aligned_cols=144  Identities=18%  Similarity=0.173  Sum_probs=99.3

Q ss_pred             ceEEeeCceee-------ccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCC
Q 024315           81 NILWHKNSVDK-------RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDL  149 (269)
Q Consensus        81 ~~~~~~~~v~~-------~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~  149 (269)
                      .+++++..++|       .++.++++++|+.++|+|+||||||||++.|.|.+ ++.+|.|.+||.++.+    .+++.+
T Consensus      1234 ~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~-~p~~G~I~IdG~di~~i~~~~lR~~i 1312 (1495)
T PLN03232       1234 SIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIV-ELEKGRIMIDDCDVAKFGLTDLRRVL 1312 (1495)
T ss_pred             cEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-cCCCceEEECCEEhhhCCHHHHHhhc
Confidence            35555555444       45669999999999999999999999999999988 5779999999998863    344444


Q ss_pred             CCChhhH-------HHHH-----------HHHHHHH---HHHH--hCCccee----eccCChHHHHH-HHHHHhCCCCCc
Q 024315          150 SFKAEDR-------VENI-----------RRIGEVA---KLFA--DAGVICI----ACLISPYRKDR-DACRSMLPEGDF  201 (269)
Q Consensus       150 g~~~~~~-------~~~~-----------~~l~~~a---~~~~--~~g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~  201 (269)
                      ++.+|+.       ++++           ....+.+   ....  ..|+...    ....+++++|| ..+|+++.++++
T Consensus      1313 ~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~I 1392 (1495)
T PLN03232       1313 SIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKI 1392 (1495)
T ss_pred             EEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCE
Confidence            4444431       1111           1101111   0111  1233222    23457778877 699999999999


Q ss_pred             cEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          202 IEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       202 ~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                        +.+|||++.+|....+.+.+.+++
T Consensus      1393 --LILDEATSaLD~~Te~~Iq~~L~~ 1416 (1495)
T PLN03232       1393 --LVLDEATASVDVRTDSLIQRTIRE 1416 (1495)
T ss_pred             --EEEECCcccCCHHHHHHHHHHHHH
Confidence              999999999999887777766664

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.34  E-value=3.6e-12  Score=123.96  Aligned_cols=133  Identities=16%  Similarity=0.197  Sum_probs=92.6

Q ss_pred             eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-----ccccCCCCChhhH---------
Q 024315           91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----GLNRDLSFKAEDR---------  156 (269)
Q Consensus        91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-----~l~~~~g~~~~~~---------  156 (269)
                      ..+++++++++|++++|+|+||||||||++.|++.++ +.+|.|.++|.++..     .++..++|.+|+.         
T Consensus       278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~  356 (510)
T PRK09700        278 KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK-RAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNF  356 (510)
T ss_pred             cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc-CCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCC
Confidence            4678899999999999999999999999999999884 668999999976532     1122233333320         


Q ss_pred             --HHHHH--------------------HH-HHHHHHHHhCCcc-e----eeccCChHHHHH-HHHHHhCCCCCccEEEEe
Q 024315          157 --VENIR--------------------RI-GEVAKLFADAGVI-C----IACLISPYRKDR-DACRSMLPEGDFIEVFMD  207 (269)
Q Consensus       157 --~~~~~--------------------~l-~~~a~~~~~~g~~-~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld  207 (269)
                        .+.+.                    .. ......+...++. .    .+..+|+++++| ..+++++.++++  +++|
T Consensus       357 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~l--LlLD  434 (510)
T PRK09700        357 SIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEV--IIFD  434 (510)
T ss_pred             cHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCE--EEEC
Confidence              01100                    00 1122334444442 2    234457777777 689999999999  9999


Q ss_pred             CChhHHHhcChhhHHHHHh
Q 024315          208 VPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       208 ~p~~~l~~R~~k~l~~~~r  226 (269)
                      ||+..++....+.+.+.++
T Consensus       435 EPt~~LD~~~~~~l~~~l~  453 (510)
T PRK09700        435 EPTRGIDVGAKAEIYKVMR  453 (510)
T ss_pred             CCCCCcCHHHHHHHHHHHH
Confidence            9999999998888776654

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.34  E-value=8.8e-12  Score=108.00  Aligned_cols=53  Identities=28%  Similarity=0.283  Sum_probs=46.6

Q ss_pred             eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhc-cCCccEEEECCeecC
Q 024315           90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDNCR  142 (269)
Q Consensus        90 ~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~-~~~~g~i~l~g~~~~  142 (269)
                      ....++++++++|++.+|+||||||||||+++|+|.-. ...+|.|+|+|.++.
T Consensus        18 eILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~   71 (251)
T COG0396          18 EILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDIL   71 (251)
T ss_pred             hhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccc
Confidence            55677899999999999999999999999999999542 345899999999986

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.33  E-value=3.6e-12  Score=137.75  Aligned_cols=144  Identities=16%  Similarity=0.136  Sum_probs=100.5

Q ss_pred             ceEEeeCceee-------ccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCC
Q 024315           81 NILWHKNSVDK-------RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDL  149 (269)
Q Consensus        81 ~~~~~~~~v~~-------~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~  149 (269)
                      .+++++..++|       .+++++++++|+.++|+|++|||||||+++|.|++ ++.+|.|.+||.+++.    .+++.+
T Consensus      1284 ~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~-~~~~G~I~IdG~dI~~i~~~~LR~~i 1362 (1522)
T TIGR00957      1284 RVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRIN-ESAEGEIIIDGLNIAKIGLHDLRFKI 1362 (1522)
T ss_pred             cEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-cCCCCeEEECCEEccccCHHHHHhcC
Confidence            45555555555       45668999999999999999999999999999988 5778999999999864    445445


Q ss_pred             CCChhhH-------HHHHHHH-----HHHHHHHHh-----------CCcceee----ccCChHHHHH-HHHHHhCCCCCc
Q 024315          150 SFKAEDR-------VENIRRI-----GEVAKLFAD-----------AGVICIA----CLISPYRKDR-DACRSMLPEGDF  201 (269)
Q Consensus       150 g~~~~~~-------~~~~~~l-----~~~a~~~~~-----------~g~~~iv----~~~~~~~~~r-~~ar~ll~~~~~  201 (269)
                      ++.+|+-       ++++...     .++...+..           .|+...+    ...+++++|| ..+|+++.++++
T Consensus      1363 ~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1442 (1522)
T TIGR00957      1363 TIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKI 1442 (1522)
T ss_pred             eEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCE
Confidence            5444431       1111100     011111111           2333222    3457777777 699999999999


Q ss_pred             cEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          202 IEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       202 ~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                        +.+|||++.+|....+.+.+.+++
T Consensus      1443 --LiLDEaTSalD~~Te~~Iq~~l~~ 1466 (1522)
T TIGR00957      1443 --LVLDEATAAVDLETDNLIQSTIRT 1466 (1522)
T ss_pred             --EEEECCcccCCHHHHHHHHHHHHH
Confidence              999999999999888877777664

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PTZ00243 ABC transporter; Provisional

Probab=99.33  E-value=3.2e-12  Score=138.18  Aligned_cols=144  Identities=17%  Similarity=0.161  Sum_probs=100.2

Q ss_pred             ceEEeeCceee-------ccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCC
Q 024315           81 NILWHKNSVDK-------RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDL  149 (269)
Q Consensus        81 ~~~~~~~~v~~-------~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~  149 (269)
                      .++++++.++|       .++++|++++|+.++|+|++|||||||+++|.|++ ++.+|.|++||.++..    .+++.+
T Consensus      1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~-~p~~G~I~IDG~di~~i~l~~LR~~I 1386 (1560)
T PTZ00243       1308 SLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMV-EVCGGEIRVNGREIGAYGLRELRRQF 1386 (1560)
T ss_pred             eEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEEcccCCHHHHHhcc
Confidence            35555555554       45678999999999999999999999999999988 5678999999999863    455555


Q ss_pred             CCChhhH-------HHHHHHH-----HHHHHHHHhC-----------Cccee----eccCChHHHHH-HHHHHhCCC-CC
Q 024315          150 SFKAEDR-------VENIRRI-----GEVAKLFADA-----------GVICI----ACLISPYRKDR-DACRSMLPE-GD  200 (269)
Q Consensus       150 g~~~~~~-------~~~~~~l-----~~~a~~~~~~-----------g~~~i----v~~~~~~~~~r-~~ar~ll~~-~~  200 (269)
                      ++.+|+-       ++++...     .++...+...           |+...    ....+++++|| .++|+++.+ ++
T Consensus      1387 ~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ 1466 (1560)
T PTZ00243       1387 SMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSG 1466 (1560)
T ss_pred             eEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCC
Confidence            5555431       1222110     1111122222           22211    23457778777 799999985 78


Q ss_pred             ccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          201 FIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       201 ~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      +  +.+|||++.+|....+.+.+.+++
T Consensus      1467 I--LlLDEATSaLD~~te~~Iq~~L~~ 1491 (1560)
T PTZ00243       1467 F--ILMDEATANIDPALDRQIQATVMS 1491 (1560)
T ss_pred             E--EEEeCCCccCCHHHHHHHHHHHHH
Confidence            8  999999999999888887766654

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.33  E-value=4.7e-12  Score=126.11  Aligned_cols=143  Identities=18%  Similarity=0.153  Sum_probs=95.3

Q ss_pred             cceEEeeC----ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc------------
Q 024315           80 TNILWHKN----SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH------------  143 (269)
Q Consensus        80 ~~~~~~~~----~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~------------  143 (269)
                      .++++.+.    .+...++++|.+.+|++++|+|+||||||||+++|++.+. +.+|.|.++|..+..            
T Consensus        16 ~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~-p~~G~i~~~g~~~~~~~~~~~~~~~~~   94 (623)
T PRK10261         16 ENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE-QAGGLVQCDKMLLRRRSRQVIELSEQS   94 (623)
T ss_pred             eceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC-CCCeEEEECCEEeccccccccccccCC
Confidence            34555543    2457788999999999999999999999999999999884 568898888753210            


Q ss_pred             -----ccc-cCCCCChhhH----------HHHHHH-------------HHHHHHHHHhCCcc-------eeeccCChHHH
Q 024315          144 -----GLN-RDLSFKAEDR----------VENIRR-------------IGEVAKLFADAGVI-------CIACLISPYRK  187 (269)
Q Consensus       144 -----~l~-~~~g~~~~~~----------~~~~~~-------------l~~~a~~~~~~g~~-------~iv~~~~~~~~  187 (269)
                           .++ ..++|..|+.          .+++..             ..++..++...++.       ..+..++++++
T Consensus        95 ~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~  174 (623)
T PRK10261         95 AAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMR  174 (623)
T ss_pred             HHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHH
Confidence                 011 1233322211          111110             01222344455552       12344677777


Q ss_pred             HH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHH
Q 024315          188 DR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (269)
Q Consensus       188 ~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~  225 (269)
                      +| .++++++.++++  +++|||+..++....+.+.+.+
T Consensus       175 QRv~iA~AL~~~P~l--LllDEPt~~LD~~~~~~l~~ll  211 (623)
T PRK10261        175 QRVMIAMALSCRPAV--LIADEPTTALDVTIQAQILQLI  211 (623)
T ss_pred             HHHHHHHHHhCCCCE--EEEeCCCCccCHHHHHHHHHHH
Confidence            77 699999999999  9999999999998877755443

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.33  E-value=7.8e-12  Score=112.06  Aligned_cols=133  Identities=19%  Similarity=0.146  Sum_probs=85.8

Q ss_pred             eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC--c--ccccCCCCChhhHHHHH----
Q 024315           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR--H--GLNRDLSFKAEDRVENI----  160 (269)
Q Consensus        89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~--~--~l~~~~g~~~~~~~~~~----  160 (269)
                      +...+.+++.+++|++++|+|+||||||||+++|+|.++ +.+|.+.++|....  .  .+...  ++..+.....    
T Consensus        37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~-p~~G~I~~~g~~~~~~~~~~~~~~--~tv~enl~~~~~~~  113 (264)
T PRK13546         37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS-PTVGKVDRNGEVSVIAISAGLSGQ--LTGIENIEFKMLCM  113 (264)
T ss_pred             eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-CCceEEEECCEEeEEecccCCCCC--CcHHHHHHHHHHHc
Confidence            456678899999999999999999999999999999884 66899999885311  1  11111  1111110000    


Q ss_pred             ----HHHH-HHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315          161 ----RRIG-EVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       161 ----~~l~-~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                          .... ....++...++..    .+...++++++| ..+++++.++++  +++|+|+..++....+.+++.+.
T Consensus       114 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~i--LlLDEPt~gLD~~~~~~l~~~L~  187 (264)
T PRK13546        114 GFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDI--LVIDEALSVGDQTFAQKCLDKIY  187 (264)
T ss_pred             CCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCE--EEEeCccccCCHHHHHHHHHHHH
Confidence                0000 0111222222222    233456666666 688999999999  99999999999887777665543

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.33  E-value=9e-12  Score=110.52  Aligned_cols=128  Identities=16%  Similarity=0.088  Sum_probs=82.9

Q ss_pred             ceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc---ccccCCCCChhhHHHHH-HHH----HHHH
Q 024315           96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH---GLNRDLSFKAEDRVENI-RRI----GEVA  167 (269)
Q Consensus        96 sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~---~l~~~~g~~~~~~~~~~-~~l----~~~a  167 (269)
                      ++.+.+|++++|+|+||||||||+++|++.+ .+.+|.+.++|..+..   ........+..+..... ...    ....
T Consensus        19 ~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~-~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~   97 (246)
T cd03237          19 GGSISESEVIGILGPNGIGKTTFIKMLAGVL-KPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKT   97 (246)
T ss_pred             cCCcCCCCEEEEECCCCCCHHHHHHHHhCCC-cCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHH
Confidence            3455689999999999999999999999988 4668999999854321   11101112222211110 000    0112


Q ss_pred             HHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315          168 KLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       168 ~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      .++...++..    .+..+++++++| ..+++++.++++  +++|||+..++...+..+.+.++
T Consensus        98 ~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~l--lllDEPt~~LD~~~~~~l~~~l~  159 (246)
T cd03237          98 EIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADI--YLLDEPSAYLDVEQRLMASKVIR  159 (246)
T ss_pred             HHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCcccCCHHHHHHHHHHHH
Confidence            2333334422    233456666666 699999999999  99999999999998887765554

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.33  E-value=1e-11  Score=121.40  Aligned_cols=144  Identities=19%  Similarity=0.193  Sum_probs=96.2

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee-cCcccccC----CCCChh
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN-CRHGLNRD----LSFKAE  154 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~-~~~~l~~~----~g~~~~  154 (269)
                      .++++.+......++++|.+.+|++++|+|+||||||||+++|++.++ +.+|.|.+++.. +. .+...    ..++..
T Consensus         5 ~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~-p~~G~i~~~~~~~i~-~~~q~~~~~~~~tv~   82 (530)
T PRK15064          5 ANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLE-PSAGNVSLDPNERLG-KLRQDQFAFEEFTVL   82 (530)
T ss_pred             EEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEecCCCEEE-EEeccCCcCCCCcHH
Confidence            456666656667899999999999999999999999999999999884 568999888632 11 00000    011111


Q ss_pred             hHHHH-----H------------------------------------HHHHHHHHHHHhCCcce-----eeccCChHHHH
Q 024315          155 DRVEN-----I------------------------------------RRIGEVAKLFADAGVIC-----IACLISPYRKD  188 (269)
Q Consensus       155 ~~~~~-----~------------------------------------~~l~~~a~~~~~~g~~~-----iv~~~~~~~~~  188 (269)
                      +....     .                                    ..-..+...+...++..     .+...|+++++
T Consensus        83 e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~q  162 (530)
T PRK15064         83 DTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKL  162 (530)
T ss_pred             HHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHH
Confidence            10000     0                                    00011223344444421     23445677777


Q ss_pred             H-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          189 R-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       189 r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      | ..+++++.++++  +++|||+..++....+.+.+.+++
T Consensus       163 rv~lA~aL~~~p~l--LlLDEPt~~LD~~~~~~l~~~l~~  200 (530)
T PRK15064        163 RVLLAQALFSNPDI--LLLDEPTNNLDINTIRWLEDVLNE  200 (530)
T ss_pred             HHHHHHHHhcCCCE--EEEcCCCcccCHHHHHHHHHHHHh
Confidence            7 688999999999  999999999999998888877764

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.33  E-value=7e-12  Score=125.20  Aligned_cols=145  Identities=17%  Similarity=0.190  Sum_probs=97.8

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec----Cccc----ccCCCC
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC----RHGL----NRDLSF  151 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~----~~~l----~~~~g~  151 (269)
                      .|+++.++.....++++|.+.+|++++|+|+||||||||+++|+|.+ .+.+|.|.+++...    ....    ...+++
T Consensus         5 ~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~-~pd~G~I~~~~~~~i~~~~q~~~~~~~~~~~~   83 (638)
T PRK10636          5 SSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEI-SADGGSYTFPGNWQLAWVNQETPALPQPALEY   83 (638)
T ss_pred             EEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEecCCCEEEEEecCCCCCCCCHHHH
Confidence            46777777777889999999999999999999999999999999977 46689999887531    1000    001111


Q ss_pred             ChhhHHH------------------HH----HH---------HHHHHHHHHhCCcc-e----eeccCChHHHHH-HHHHH
Q 024315          152 KAEDRVE------------------NI----RR---------IGEVAKLFADAGVI-C----IACLISPYRKDR-DACRS  194 (269)
Q Consensus       152 ~~~~~~~------------------~~----~~---------l~~~a~~~~~~g~~-~----iv~~~~~~~~~r-~~ar~  194 (269)
                      ..+....                  .+    ..         -..+..++...|+. .    .+...|+++++| ..++.
T Consensus        84 v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~a  163 (638)
T PRK10636         84 VIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQA  163 (638)
T ss_pred             HHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHH
Confidence            1111000                  00    00         01122334444442 1    233456677777 68999


Q ss_pred             hCCCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          195 MLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       195 ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      ++.++++  +++|+|+..++......+.+.++.
T Consensus       164 L~~~P~l--LLLDEPtn~LD~~~~~~L~~~L~~  194 (638)
T PRK10636        164 LICRSDL--LLLDEPTNHLDLDAVIWLEKWLKS  194 (638)
T ss_pred             HccCCCE--EEEcCCCCcCCHHHHHHHHHHHHh
Confidence            9999999  999999999999888887777664

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.32  E-value=6.2e-12  Score=122.88  Aligned_cols=134  Identities=17%  Similarity=0.233  Sum_probs=93.7

Q ss_pred             eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-------ccccCCCCChhhH-----
Q 024315           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-------GLNRDLSFKAEDR-----  156 (269)
Q Consensus        89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-------~l~~~~g~~~~~~-----  156 (269)
                      ....+++++.+.+|++++|+|+||||||||+++|++.++  .+|.|.++|.++..       .++..++|.+|+.     
T Consensus       299 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~--~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~  376 (529)
T PRK15134        299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN--SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLN  376 (529)
T ss_pred             ceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC--CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcC
Confidence            456788999999999999999999999999999999874  57999999976532       0122334433321     


Q ss_pred             -----HHHHHH--------------HHHHHHHHHhCCcc-e----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChh
Q 024315          157 -----VENIRR--------------IGEVAKLFADAGVI-C----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQ  211 (269)
Q Consensus       157 -----~~~~~~--------------l~~~a~~~~~~g~~-~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~  211 (269)
                           .+++..              -..+...+...++. .    .+..+++++++| ..+++++.++++  +++|||+.
T Consensus       377 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~l--lllDEPt~  454 (529)
T PRK15134        377 PRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSL--IILDEPTS  454 (529)
T ss_pred             CcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCE--EEeeCCcc
Confidence                 011100              01122334444542 1    234456777777 689999999999  99999999


Q ss_pred             HHHhcChhhHHHHHh
Q 024315          212 VCEARDPKGLYKLAR  226 (269)
Q Consensus       212 ~l~~R~~k~l~~~~r  226 (269)
                      .++....+.+++.++
T Consensus       455 ~LD~~~~~~l~~~l~  469 (529)
T PRK15134        455 SLDKTVQAQILALLK  469 (529)
T ss_pred             ccCHHHHHHHHHHHH
Confidence            999999888776665

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.31  E-value=5.6e-12  Score=122.93  Aligned_cols=135  Identities=18%  Similarity=0.204  Sum_probs=90.9

Q ss_pred             eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEEC-Cee---cCc-------ccccCCCCChhhH-
Q 024315           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD-GDN---CRH-------GLNRDLSFKAEDR-  156 (269)
Q Consensus        89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~-g~~---~~~-------~l~~~~g~~~~~~-  156 (269)
                      ....++++|.+++|++++|+|+||||||||+++|++.++ +.+|.|.++ |.+   +..       .++..++|.+++. 
T Consensus       297 ~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~-p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~  375 (520)
T TIGR03269       297 VKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE-PTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYD  375 (520)
T ss_pred             ceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcc
Confidence            345678899999999999999999999999999999884 668999995 432   110       1112223322211 


Q ss_pred             -------HHHHHH----------H-HHHHHHHHhCCcce---------eeccCChHHHHH-HHHHHhCCCCCccEEEEeC
Q 024315          157 -------VENIRR----------I-GEVAKLFADAGVIC---------IACLISPYRKDR-DACRSMLPEGDFIEVFMDV  208 (269)
Q Consensus       157 -------~~~~~~----------l-~~~a~~~~~~g~~~---------iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~  208 (269)
                             .+.+..          . ..+...+...++..         .+..+++++++| ..+++++.++++  +++||
T Consensus       376 l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~l--LllDE  453 (520)
T TIGR03269       376 LYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRI--VILDE  453 (520)
T ss_pred             cCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeC
Confidence                   111110          0 11223344455531         233456777777 689999999999  99999


Q ss_pred             ChhHHHhcChhhHHHHHh
Q 024315          209 PLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       209 p~~~l~~R~~k~l~~~~r  226 (269)
                      |+..++....+.+.+.++
T Consensus       454 Pt~~LD~~~~~~l~~~l~  471 (520)
T TIGR03269       454 PTGTMDPITKVDVTHSIL  471 (520)
T ss_pred             CcccCCHHHHHHHHHHHH
Confidence            999999999888776654

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.31  E-value=5.6e-12  Score=111.75  Aligned_cols=133  Identities=17%  Similarity=0.247  Sum_probs=88.3

Q ss_pred             eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhH--------HH
Q 024315           91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDR--------VE  158 (269)
Q Consensus        91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~--------~~  158 (269)
                      ..+.++|++.+|++++|+|+||||||||+++|+|.++ + +|.+.++|.++..    .++..++|.+++.        .+
T Consensus        11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~   88 (248)
T PRK03695         11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-G-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQ   88 (248)
T ss_pred             eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-C-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHH
Confidence            5678899999999999999999999999999999874 4 7999999987642    1111122222210        11


Q ss_pred             HHHH-----------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCC-------CCCccEEEEeCChhHHHh
Q 024315          159 NIRR-----------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLP-------EGDFIEVFMDVPLQVCEA  215 (269)
Q Consensus       159 ~~~~-----------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~-------~~~~~~i~ld~p~~~l~~  215 (269)
                      ++..           .......+...++..    .+...++++++| ..+++++.       ++++  +++|+|+..++.
T Consensus        89 nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~l--lllDEPt~~LD~  166 (248)
T PRK03695         89 YLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQL--LLLDEPMNSLDV  166 (248)
T ss_pred             HHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCE--EEEcCCcccCCH
Confidence            1100           011222333334422    234456666666 68888886       4577  999999999999


Q ss_pred             cChhhHHHHHhc
Q 024315          216 RDPKGLYKLARE  227 (269)
Q Consensus       216 R~~k~l~~~~r~  227 (269)
                      ...+.+++.+++
T Consensus       167 ~~~~~l~~~L~~  178 (248)
T PRK03695        167 AQQAALDRLLSE  178 (248)
T ss_pred             HHHHHHHHHHHH
Confidence            988887766553

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.31  E-value=1.6e-11  Score=120.83  Aligned_cols=144  Identities=17%  Similarity=0.135  Sum_probs=94.3

Q ss_pred             cceEEeeC-ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee-cCcccccCC----CCCh
Q 024315           80 TNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN-CRHGLNRDL----SFKA  153 (269)
Q Consensus        80 ~~~~~~~~-~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~-~~~~l~~~~----g~~~  153 (269)
                      .++++.+. .....++++|++.+|++++|+|+||||||||+++|+|.+. +.+|.|.+++.. +.. +..+.    .++.
T Consensus        10 ~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~-p~~G~i~~~~~~~i~~-v~Q~~~~~~~~tv   87 (556)
T PRK11819         10 NRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK-EFEGEARPAPGIKVGY-LPQEPQLDPEKTV   87 (556)
T ss_pred             eeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEecCCCEEEE-EecCCCCCCCCcH
Confidence            46777765 5667889999999999999999999999999999999884 567888876421 110 00000    1111


Q ss_pred             hhHHHH-HH----------H----------------------------------HHHHHHHHHhCCcc---eeeccCChH
Q 024315          154 EDRVEN-IR----------R----------------------------------IGEVAKLFADAGVI---CIACLISPY  185 (269)
Q Consensus       154 ~~~~~~-~~----------~----------------------------------l~~~a~~~~~~g~~---~iv~~~~~~  185 (269)
                      .+.... ..          .                                  ..++...+...++.   ..+...+++
T Consensus        88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgG  167 (556)
T PRK11819         88 RENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGG  167 (556)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchhhcCHH
Confidence            111100 00          0                                  00111122223331   122345667


Q ss_pred             HHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          186 RKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       186 ~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      +++| ..+++++.++++  +++|||+..++....+.+.+.+++
T Consensus       168 qkqrv~la~al~~~p~v--lLLDEPt~~LD~~~~~~l~~~L~~  208 (556)
T PRK11819        168 ERRRVALCRLLLEKPDM--LLLDEPTNHLDAESVAWLEQFLHD  208 (556)
T ss_pred             HHHHHHHHHHHhCCCCE--EEEcCCCCcCChHHHHHHHHHHHh
Confidence            7676 689999999999  999999999999998888877765

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.31  E-value=2.2e-12  Score=138.58  Aligned_cols=144  Identities=18%  Similarity=0.209  Sum_probs=95.8

Q ss_pred             cceEEeeCc---eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEE-CCeecCc----ccccCCCC
Q 024315           80 TNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL-DGDNCRH----GLNRDLSF  151 (269)
Q Consensus        80 ~~~~~~~~~---v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l-~g~~~~~----~l~~~~g~  151 (269)
                      .++++.++.   ....+++++.+++|++++|+|+||||||||+++|+|++ ++.+|.|++ +|.++..    .++..+++
T Consensus       386 ~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~-~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~  464 (1466)
T PTZ00265        386 KNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLY-DPTEGDIIINDSHNLKDINLKWWRSKIGV  464 (1466)
T ss_pred             EEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhc-cCCCCeEEEeCCcchhhCCHHHHHHhccE
Confidence            345555532   23456779999999999999999999999999999988 577999999 4565532    23444555


Q ss_pred             ChhhH-------HHHHHHH-------------------------------------------------------------
Q 024315          152 KAEDR-------VENIRRI-------------------------------------------------------------  163 (269)
Q Consensus       152 ~~~~~-------~~~~~~l-------------------------------------------------------------  163 (269)
                      .+|+.       .+++..-                                                             
T Consensus       465 V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  544 (1466)
T PTZ00265        465 VSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTI  544 (1466)
T ss_pred             ecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccC
Confidence            54431       1111100                                                             


Q ss_pred             --HHHHHHHHhC-----------Ccc----eeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHH
Q 024315          164 --GEVAKLFADA-----------GVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (269)
Q Consensus       164 --~~~a~~~~~~-----------g~~----~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~  225 (269)
                        .++.......           |..    .-...+++++++| .++|+++.++++  +++|||+..++....+.+.+.+
T Consensus       545 ~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~I--LlLDEpTSaLD~~se~~i~~~L  622 (1466)
T PTZ00265        545 KDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKI--LILDEATSSLDNKSEYLVQKTI  622 (1466)
T ss_pred             CHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCE--EEEeCcccccCHHHHHHHHHHH
Confidence              0001111111           111    1123457777777 799999999999  9999999999998888766555


Q ss_pred             h
Q 024315          226 R  226 (269)
Q Consensus       226 r  226 (269)
                      +
T Consensus       623 ~  623 (1466)
T PTZ00265        623 N  623 (1466)
T ss_pred             H
Confidence            4

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.31  E-value=3.6e-11  Score=108.89  Aligned_cols=133  Identities=20%  Similarity=0.224  Sum_probs=91.6

Q ss_pred             ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccC-C---ccEEEECCeecCc-------ccc-cCCCCChhh
Q 024315           88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR-G---KLTYILDGDNCRH-------GLN-RDLSFKAED  155 (269)
Q Consensus        88 ~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~-~---~g~i~l~g~~~~~-------~l~-~~~g~~~~~  155 (269)
                      .+.+.+++||.+.+||+++|+|.|||||||++++|+++++.+ +   +|.|.|+|.++..       .++ +.+++..|+
T Consensus        17 ~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~   96 (316)
T COG0444          17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD   96 (316)
T ss_pred             cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcC
Confidence            588999999999999999999999999999999999999732 2   5899999997642       111 122333332


Q ss_pred             H--------------HHHHHH----------HHHHHHHHHhCCcce-------eeccCChHHHHH-HHHHHhCCCCCccE
Q 024315          156 R--------------VENIRR----------IGEVAKLFADAGVIC-------IACLISPYRKDR-DACRSMLPEGDFIE  203 (269)
Q Consensus       156 ~--------------~~~~~~----------l~~~a~~~~~~g~~~-------iv~~~~~~~~~r-~~ar~ll~~~~~~~  203 (269)
                      -              .+.++.          ......++...++..       +.-..+++..|| -++.+++.++++  
T Consensus        97 p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~L--  174 (316)
T COG0444          97 PMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKL--  174 (316)
T ss_pred             chhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCE--
Confidence            1              111111          112223444444422       222346666777 588999999999  


Q ss_pred             EEEeCChhHHHhcChhhHH
Q 024315          204 VFMDVPLQVCEARDPKGLY  222 (269)
Q Consensus       204 i~ld~p~~~l~~R~~k~l~  222 (269)
                      ++.|||+..||.-.+.++.
T Consensus       175 lIADEPTTALDvt~QaqIl  193 (316)
T COG0444         175 LIADEPTTALDVTVQAQIL  193 (316)
T ss_pred             EEeCCCcchhhHHHHHHHH
Confidence            9999999999988877744

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.31  E-value=1.2e-11  Score=107.21  Aligned_cols=131  Identities=18%  Similarity=0.117  Sum_probs=81.4

Q ss_pred             eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEE-ECCeecCcccccCC--CCChhhHHHHHHHH----
Q 024315           91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYI-LDGDNCRHGLNRDL--SFKAEDRVENIRRI----  163 (269)
Q Consensus        91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~-l~g~~~~~~l~~~~--g~~~~~~~~~~~~l----  163 (269)
                      ..+++++.+++|++++|+|+||||||||++.|++.+ .+.+|.+. +++..+.-+....+  .++..+........    
T Consensus         2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~-~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~   80 (213)
T PRK15177          2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLD-APDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLD   80 (213)
T ss_pred             eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-cCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCC
Confidence            356788999999999999999999999999999987 46688886 77765421110000  11222221111000    


Q ss_pred             -HHHH-HHHHhCCc----ceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHH
Q 024315          164 -GEVA-KLFADAGV----ICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL  224 (269)
Q Consensus       164 -~~~a-~~~~~~g~----~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~  224 (269)
                       .+.. ......++    ...+...++++++| ..+++++.++++  +++|+|+..++....+.+...
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~l--lllDEP~~~lD~~~~~~~~~~  146 (213)
T PRK15177         81 GDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRL--YIADGKLYTGDNATQLRMQAA  146 (213)
T ss_pred             HHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCE--EEECCCCccCCHHHHHHHHHH
Confidence             0000 01111111    11223345556666 689999999998  999999988888776666554

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.31  E-value=1.3e-11  Score=119.57  Aligned_cols=133  Identities=18%  Similarity=0.242  Sum_probs=91.1

Q ss_pred             eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-----cccCCCCChhhHH--------
Q 024315           91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAEDRV--------  157 (269)
Q Consensus        91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-----l~~~~g~~~~~~~--------  157 (269)
                      ..+.+++.+.+|++++|+|+||||||||+++|.+.+ .+.+|.|.++|.++...     ++..++|.++++.        
T Consensus       263 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~  341 (491)
T PRK10982        263 SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIR-EKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYL  341 (491)
T ss_pred             ccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCC-cCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCC
Confidence            467889999999999999999999999999999988 46789999999776421     1222333333210        


Q ss_pred             --------HHHHH------------H-HHHHHHHHhCCc-----ceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCCh
Q 024315          158 --------ENIRR------------I-GEVAKLFADAGV-----ICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPL  210 (269)
Q Consensus       158 --------~~~~~------------l-~~~a~~~~~~g~-----~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~  210 (269)
                              +.+..            . ......+...++     ...+...++++++| ..++.++.++++  +++|||+
T Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~i--llLDEPt  419 (491)
T PRK10982        342 DIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEI--LMLDEPT  419 (491)
T ss_pred             cHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCE--EEEcCCC
Confidence                    00000            0 001112222233     11234456777777 688999999999  9999999


Q ss_pred             hHHHhcChhhHHHHHh
Q 024315          211 QVCEARDPKGLYKLAR  226 (269)
Q Consensus       211 ~~l~~R~~k~l~~~~r  226 (269)
                      ..++...++.+++.++
T Consensus       420 ~gLD~~~~~~~~~~l~  435 (491)
T PRK10982        420 RGIDVGAKFEIYQLIA  435 (491)
T ss_pred             cccChhHHHHHHHHHH
Confidence            9999999888776653

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.30  E-value=2.7e-11  Score=102.12  Aligned_cols=140  Identities=17%  Similarity=0.194  Sum_probs=91.4

Q ss_pred             ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccc---c-------CCC
Q 024315           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN---R-------DLS  150 (269)
Q Consensus        81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~---~-------~~g  150 (269)
                      ++..+....+.-.+.+|++.+|+.+.|.|+||||||||+++|+|++ .|..|.|.+++.++.....   .       ..|
T Consensus         7 ~L~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl-~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~g   85 (209)
T COG4133           7 NLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLL-RPDAGEVYWQGEPIQNVRESYHQALLYLGHQPG   85 (209)
T ss_pred             hhhhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHccc-CCCCCeEEecCCCCccchhhHHHHHHHhhcccc
Confidence            3444444555566778999999999999999999999999999998 5678999999887653111   1       112


Q ss_pred             ----CChhhHHHHHHHHHH------HHHHHHhCCccee----eccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHh
Q 024315          151 ----FKAEDRVENIRRIGE------VAKLFADAGVICI----ACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEA  215 (269)
Q Consensus       151 ----~~~~~~~~~~~~l~~------~a~~~~~~g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~  215 (269)
                          ++..|..+.+..+..      +...+...|+..+    +..+|.+++.| ..+|-.+...++  .++|||+..+++
T Consensus        86 iK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pL--WiLDEP~taLDk  163 (209)
T COG4133          86 IKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPL--WILDEPFTALDK  163 (209)
T ss_pred             ccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCc--eeecCcccccCH
Confidence                222233233333211      2223333444322    22335555555 577777888888  789999999998


Q ss_pred             cChhhHHH
Q 024315          216 RDPKGLYK  223 (269)
Q Consensus       216 R~~k~l~~  223 (269)
                      .....+..
T Consensus       164 ~g~a~l~~  171 (209)
T COG4133         164 EGVALLTA  171 (209)
T ss_pred             HHHHHHHH
Confidence            87766543

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.30  E-value=1.1e-11  Score=110.46  Aligned_cols=142  Identities=19%  Similarity=0.188  Sum_probs=89.4

Q ss_pred             ceEEeeCce-eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEE-----------ECCeecCcc---c
Q 024315           81 NILWHKNSV-DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYI-----------LDGDNCRHG---L  145 (269)
Q Consensus        81 ~~~~~~~~v-~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~-----------l~g~~~~~~---l  145 (269)
                      ++.+.+... ...++.+ .+.+|++++|+|+||||||||+++|++.+ .+.+|.|.           ++|.++...   .
T Consensus         5 ~~~~~y~~~~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~-~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~   82 (255)
T cd03236           5 EPVHRYGPNSFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKL-KPNLGKFDDPPDWDEILDEFRGSELQNYFTKL   82 (255)
T ss_pred             CcceeecCcchhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCc-CCCCceEeeccccchhhhhccCchhhhhhHHh
Confidence            444555433 3567778 48999999999999999999999999988 46688885           677665321   0


Q ss_pred             cc---CCCCChhh-----------HHHHH---HHHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccE
Q 024315          146 NR---DLSFKAED-----------RVENI---RRIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIE  203 (269)
Q Consensus       146 ~~---~~g~~~~~-----------~~~~~---~~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~  203 (269)
                      ..   .+++..+.           ....+   ..-......+...++..    .+...++++++| ..++.++.++++  
T Consensus        83 ~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~i--  160 (255)
T cd03236          83 LEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADF--  160 (255)
T ss_pred             hhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCE--
Confidence            00   11111110           00000   00012233344444422    223345565655 689999999998  


Q ss_pred             EEEeCChhHHHhcChhhHHHHHh
Q 024315          204 VFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       204 i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      +++|+|+..++....+.+++.++
T Consensus       161 lllDEPts~LD~~~~~~l~~~l~  183 (255)
T cd03236         161 YFFDEPSSYLDIKQRLNAARLIR  183 (255)
T ss_pred             EEEECCCCCCCHHHHHHHHHHHH
Confidence            99999999999988777665544

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.30  E-value=1.3e-11  Score=119.92  Aligned_cols=132  Identities=18%  Similarity=0.247  Sum_probs=90.9

Q ss_pred             eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-----cccCCCCChhhH---------
Q 024315           91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAEDR---------  156 (269)
Q Consensus        91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-----l~~~~g~~~~~~---------  156 (269)
                      ..+++++.+.+|++++|+|+||||||||++.|++.+ ++.+|.|.++|.++...     .+..++|.+|+.         
T Consensus       268 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~-~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~  346 (501)
T PRK11288        268 LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGAT-RRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVH  346 (501)
T ss_pred             cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCC-cCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCC
Confidence            458889999999999999999999999999999988 46689999999765321     112222222221         


Q ss_pred             --HHHHH-----------------H-HHHHHHHHHhCCcc-----eeeccCChHHHHH-HHHHHhCCCCCccEEEEeCCh
Q 024315          157 --VENIR-----------------R-IGEVAKLFADAGVI-----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPL  210 (269)
Q Consensus       157 --~~~~~-----------------~-l~~~a~~~~~~g~~-----~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~  210 (269)
                        .+.+.                 . .......+...++.     ..+..+|+++++| ..++.++.++++  +++|||+
T Consensus       347 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~l--llLDEPt  424 (501)
T PRK11288        347 SVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKV--ILLDEPT  424 (501)
T ss_pred             CHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCE--EEEcCCC
Confidence              01100                 0 01122333444441     1244557777777 688999999999  9999999


Q ss_pred             hHHHhcChhhHHHHH
Q 024315          211 QVCEARDPKGLYKLA  225 (269)
Q Consensus       211 ~~l~~R~~k~l~~~~  225 (269)
                      ..++....+.+.+.+
T Consensus       425 ~~LD~~~~~~l~~~l  439 (501)
T PRK11288        425 RGIDVGAKHEIYNVI  439 (501)
T ss_pred             CCCCHhHHHHHHHHH
Confidence            999999988876554

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.29  E-value=2.1e-11  Score=119.24  Aligned_cols=144  Identities=18%  Similarity=0.093  Sum_probs=94.2

Q ss_pred             ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccC----C--CCChh
Q 024315           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD----L--SFKAE  154 (269)
Q Consensus        81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~----~--g~~~~  154 (269)
                      ++++.+......+++++.+++|++++|+|+||||||||+++|+|.+ .+.+|.|.+++..-..-+...    +  .++..
T Consensus       324 ~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~-~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~  402 (530)
T PRK15064        324 NLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGEL-EPDSGTVKWSENANIGYYAQDHAYDFENDLTLF  402 (530)
T ss_pred             eeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCceEEEEEcccccccCCCCCcHH
Confidence            4454444444567789999999999999999999999999999987 466899998874211001110    0  11222


Q ss_pred             hHHHHHH----HHHHHHHHHHhCCcc-----eeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHH
Q 024315          155 DRVENIR----RIGEVAKLFADAGVI-----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL  224 (269)
Q Consensus       155 ~~~~~~~----~l~~~a~~~~~~g~~-----~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~  224 (269)
                      +......    .-..+...+...++.     ..+...|+++++| ..+++++.++++  +++|||+..++....+.+.+.
T Consensus       403 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~l--llLDEPt~~LD~~~~~~l~~~  480 (530)
T PRK15064        403 DWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNV--LVMDEPTNHMDMESIESLNMA  480 (530)
T ss_pred             HHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCE--EEEcCCCCCCCHHHHHHHHHH
Confidence            1111000    001122333344431     1244456777777 688999999999  999999999999988888777


Q ss_pred             Hhc
Q 024315          225 ARE  227 (269)
Q Consensus       225 ~r~  227 (269)
                      ++.
T Consensus       481 l~~  483 (530)
T PRK15064        481 LEK  483 (530)
T ss_pred             HHH
Confidence            664

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.29  E-value=1.4e-11  Score=122.97  Aligned_cols=144  Identities=17%  Similarity=0.128  Sum_probs=93.5

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-cccC---C--CCCh
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-LNRD---L--SFKA  153 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-l~~~---~--g~~~  153 (269)
                      .++++.+......+.+++.+.+|++++|+|+||||||||+++|++.+ .+.+|.|.++ .++.-+ +...   +  ..+.
T Consensus       323 ~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~-~p~~G~i~~~-~~~~i~y~~q~~~~l~~~~tv  400 (635)
T PRK11147        323 ENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQL-QADSGRIHCG-TKLEVAYFDQHRAELDPEKTV  400 (635)
T ss_pred             eeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCCcEEEEC-CCcEEEEEeCcccccCCCCCH
Confidence            45555555555678889999999999999999999999999999987 4668888884 332100 0000   0  0111


Q ss_pred             hhHHHHH------H-HHHHHHHHHHhCCcc-----eeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhh
Q 024315          154 EDRVENI------R-RIGEVAKLFADAGVI-----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKG  220 (269)
Q Consensus       154 ~~~~~~~------~-~l~~~a~~~~~~g~~-----~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~  220 (269)
                      .+.....      . ....+...+...++.     ..+..+|+++++| ..++.++.++++  +++|+|+..++......
T Consensus       401 ~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~l--LlLDEPt~~LD~~~~~~  478 (635)
T PRK11147        401 MDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNL--LILDEPTNDLDVETLEL  478 (635)
T ss_pred             HHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCE--EEEcCCCCCCCHHHHHH
Confidence            1110000      0 001122233333332     1234457777777 688999999999  99999999999998888


Q ss_pred             HHHHHhc
Q 024315          221 LYKLARE  227 (269)
Q Consensus       221 l~~~~r~  227 (269)
                      +.+.+++
T Consensus       479 l~~~l~~  485 (635)
T PRK11147        479 LEELLDS  485 (635)
T ss_pred             HHHHHHh
Confidence            8777765

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.28  E-value=2.9e-11  Score=117.04  Aligned_cols=134  Identities=20%  Similarity=0.175  Sum_probs=88.2

Q ss_pred             eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCC--CCChhhHHHHH-------
Q 024315           90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDL--SFKAEDRVENI-------  160 (269)
Q Consensus        90 ~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~--g~~~~~~~~~~-------  160 (269)
                      ...+.++|.+.+|++++|+|+||||||||+++|+|.+ .+.+|.|.++|.+........+  .++..+.....       
T Consensus        38 ~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl-~P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~  116 (549)
T PRK13545         38 YALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVT-MPNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLT  116 (549)
T ss_pred             eEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCC-CCCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCC
Confidence            3567889999999999999999999999999999988 4668999999865321100000  01111111000       


Q ss_pred             -HHH-HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315          161 -RRI-GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       161 -~~l-~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                       ... .....++...++..    .+..+++++++| ..+++++.++++  +++|+|+..++....+.+.+.++
T Consensus       117 ~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~L--LLLDEPTsgLD~~sr~~LlelL~  187 (549)
T PRK13545        117 KEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDI--LVIDEALSVGDQTFTKKCLDKMN  187 (549)
T ss_pred             HHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCE--EEEECCcccCCHHHHHHHHHHHH
Confidence             000 01112233333321    234456677776 689999999999  99999999999988777766654

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.28  E-value=1.9e-11  Score=122.48  Aligned_cols=144  Identities=15%  Similarity=0.090  Sum_probs=88.9

Q ss_pred             ceEEeeC-ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHH
Q 024315           81 NILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVEN  159 (269)
Q Consensus        81 ~~~~~~~-~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~  159 (269)
                      ++++.+. .....++.++.+++|++++|+|+||||||||++.|+|.+ ++.+|.+.+++.....-+..+..+......++
T Consensus       456 nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~-~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~en  534 (659)
T TIGR00954       456 NIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELW-PVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQ  534 (659)
T ss_pred             eeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCeEeecCCCcEEEECCCCCCCCcCHHHH
Confidence            4444432 223566789999999999999999999999999999987 45678887764211000000000000000011


Q ss_pred             HHH-------------HHHHHHHHHhCCcce-------------eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhH
Q 024315          160 IRR-------------IGEVAKLFADAGVIC-------------IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV  212 (269)
Q Consensus       160 ~~~-------------l~~~a~~~~~~g~~~-------------iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~  212 (269)
                      +..             -.++...+...++..             .....++++++| ..+|+++.++++  +++|||+..
T Consensus       535 i~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~i--llLDEpts~  612 (659)
T TIGR00954       535 IIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQF--AILDECTSA  612 (659)
T ss_pred             HhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCE--EEEeCCccC
Confidence            000             001111222222211             123456777777 799999999999  999999999


Q ss_pred             HHhcChhhHHHHHhc
Q 024315          213 CEARDPKGLYKLARE  227 (269)
Q Consensus       213 l~~R~~k~l~~~~r~  227 (269)
                      ++....+.+++.+++
T Consensus       613 LD~~~~~~l~~~l~~  627 (659)
T TIGR00954       613 VSVDVEGYMYRLCRE  627 (659)
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999998888877665

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.28  E-value=2.6e-11  Score=121.12  Aligned_cols=145  Identities=14%  Similarity=0.132  Sum_probs=95.4

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-----ccccCCCCChh
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----GLNRDLSFKAE  154 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-----~l~~~~g~~~~  154 (269)
                      .++++.++.....++++|.+++|++++|+|+||||||||+++|+|.+ .+.+|.|.+++.....     ......++..+
T Consensus         7 ~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~-~p~~G~I~~~~~~~~~~l~q~~~~~~~~~v~~   85 (635)
T PRK11147          7 HGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEV-LLDDGRIIYEQDLIVARLQQDPPRNVEGTVYD   85 (635)
T ss_pred             eeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCC-CCCCeEEEeCCCCEEEEeccCCCCCCCCCHHH
Confidence            45666666666788999999999999999999999999999999987 4668999988742110     00111111111


Q ss_pred             hHH--------------------------HHHHHH----------------HHHHHHHHhCCcc--eeeccCChHHHHH-
Q 024315          155 DRV--------------------------ENIRRI----------------GEVAKLFADAGVI--CIACLISPYRKDR-  189 (269)
Q Consensus       155 ~~~--------------------------~~~~~l----------------~~~a~~~~~~g~~--~iv~~~~~~~~~r-  189 (269)
                      ...                          +.+...                .++..++...++.  ..+...|+++++| 
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~LSgGekqRv  165 (635)
T PRK11147         86 FVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSLSGGWLRKA  165 (635)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCchhhcCHHHHHHH
Confidence            100                          000000                0112223333331  1233456667766 


Q ss_pred             HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          190 DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       190 ~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      ..++.++.++++  +++|+|+..++......+.+.++.
T Consensus       166 ~LAraL~~~P~l--LLLDEPt~~LD~~~~~~L~~~L~~  201 (635)
T PRK11147        166 ALGRALVSNPDV--LLLDEPTNHLDIETIEWLEGFLKT  201 (635)
T ss_pred             HHHHHHhcCCCE--EEEcCCCCccCHHHHHHHHHHHHh
Confidence            689999999999  999999999999888877776654

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.28  E-value=4.7e-11  Score=97.65  Aligned_cols=159  Identities=17%  Similarity=0.185  Sum_probs=98.3

Q ss_pred             ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccC--CccEEEECCeecCc--ccccCCCCChhh-
Q 024315           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR--GKLTYILDGDNCRH--GLNRDLSFKAED-  155 (269)
Q Consensus        81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~--~~g~i~l~g~~~~~--~l~~~~g~~~~~-  155 (269)
                      |++..-+.-......++++.+|+++-|+||||||||||+..+.+.|...  -.|.+++++..+..  .-.+.+|+-.|+ 
T Consensus         7 nvsl~l~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~   86 (213)
T COG4136           7 NVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDA   86 (213)
T ss_pred             eeeecCCCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeeccc
Confidence            3444444444556678999999999999999999999999999998532  26899999887642  001111111110 


Q ss_pred             --------------------HHHHHHHHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCCh
Q 024315          156 --------------------RVENIRRIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPL  210 (269)
Q Consensus       156 --------------------~~~~~~~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~  210 (269)
                                          .-+.+++...  ..+...|+..    ..+..+++++.| ...|.++.++++  +++|+|+
T Consensus        87 lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~--aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~--lLLDEPF  162 (213)
T COG4136          87 LLFPHLSVGQNLLFALPATLKGNARRNAAN--AALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKA--LLLDEPF  162 (213)
T ss_pred             ccccccccccceEEecCcccccHHHHhhHH--HHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcce--eeeCCch
Confidence                                0011111111  1122223321    234456666666 578899999999  9999999


Q ss_pred             hHHHhcChhh----HHHHHhcCccccccccccccCCC
Q 024315          211 QVCEARDPKG----LYKLAREGKVKGFTGIDDPYEPP  243 (269)
Q Consensus       211 ~~l~~R~~k~----l~~~~r~g~~~~~~~i~~~~e~p  243 (269)
                      +.++...+..    .+...|...+..+.--.+.-+.|
T Consensus       163 S~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp  199 (213)
T COG4136         163 SRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP  199 (213)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC
Confidence            9999877766    34556666665544333444444

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.27  E-value=3.6e-11  Score=118.15  Aligned_cols=144  Identities=17%  Similarity=0.145  Sum_probs=93.1

Q ss_pred             cceEEeeC-ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee-cCcccccCC----CCCh
Q 024315           80 TNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN-CRHGLNRDL----SFKA  153 (269)
Q Consensus        80 ~~~~~~~~-~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~-~~~~l~~~~----g~~~  153 (269)
                      .|+++.+. .....+++++.+.+|++++|+|+||||||||+++|+|.+. +.+|.|.+++.. +.. +....    .++.
T Consensus         8 ~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~-p~~G~i~~~~~~~i~~-v~Q~~~~~~~~tv   85 (552)
T TIGR03719         8 NRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK-EFNGEARPAPGIKVGY-LPQEPQLDPTKTV   85 (552)
T ss_pred             eeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEecCCCEEEE-EeccCCCCCCCcH
Confidence            45666664 4557788999999999999999999999999999999874 568888886521 110 00000    1111


Q ss_pred             hhHHHH-HH-------------------------------HH-------------HHHHHHHHhCCcc---eeeccCChH
Q 024315          154 EDRVEN-IR-------------------------------RI-------------GEVAKLFADAGVI---CIACLISPY  185 (269)
Q Consensus       154 ~~~~~~-~~-------------------------------~l-------------~~~a~~~~~~g~~---~iv~~~~~~  185 (269)
                      .+.... ..                               .+             ..+...+...++.   ..+...|++
T Consensus        86 ~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgG  165 (552)
T TIGR03719        86 RENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGG  165 (552)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhhcCHH
Confidence            111000 00                               00             0011122222221   123345667


Q ss_pred             HHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          186 RKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       186 ~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      +++| ..++.++.++++  +++|||+..++....+.+.+.+++
T Consensus       166 qkqrv~la~al~~~p~l--LLLDEPt~~LD~~~~~~l~~~L~~  206 (552)
T TIGR03719       166 ERRRVALCRLLLSKPDM--LLLDEPTNHLDAESVAWLEQHLQE  206 (552)
T ss_pred             HHHHHHHHHHHhcCCCE--EEEcCCCCCCChHHHHHHHHHHHh
Confidence            7777 688999999999  999999999999998888877664

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=99.26  E-value=3.9e-11  Score=106.33  Aligned_cols=154  Identities=21%  Similarity=0.243  Sum_probs=93.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHHHH-HHHHHHHHHhCCcceeeccC
Q 024315          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRR-IGEVAKLFADAGVICIACLI  182 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~-l~~~a~~~~~~g~~~iv~~~  182 (269)
                      +|.|+|++||||||+++.|++.+...+...+.++.|.++..+..   +.. ......+. ...........+..++++..
T Consensus         1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~~---~~~-~~e~~~~~~~~~~i~~~l~~~~~VI~D~~   76 (249)
T TIGR03574         1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFPV---WKE-KYEEFIRDSTLYLIKTALKNKYSVIVDDT   76 (249)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhHH---hhH-HhHHHHHHHHHHHHHHHHhCCCeEEEecc
Confidence            47899999999999999999988655556778887776532210   111 11111111 11222223344566676666


Q ss_pred             ChHHHHHHHHHHhCCC--CCccEEEEeCChhHHHhcChhhHHHHHhcCccc--cccccccccCCCC------CCCeEEEc
Q 024315          183 SPYRKDRDACRSMLPE--GDFIEVFMDVPLQVCEARDPKGLYKLAREGKVK--GFTGIDDPYEPPL------NCEVGVHV  252 (269)
Q Consensus       183 ~~~~~~r~~ar~ll~~--~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~--~~~~i~~~~e~p~------~~e~~id~  252 (269)
                      ...+..|..+..++..  ..+..+|+++|.+.|.+|..++      ...+.  .+..+...||+|.      .+.++||+
T Consensus        77 ~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R------~~~~~~~~i~~l~~r~e~p~~~~~wd~~~~~vd~  150 (249)
T TIGR03574        77 NYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIER------GEKIPNEVIKDMYEKFDEPGTKYSWDLPDLTIDT  150 (249)
T ss_pred             chHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhC------CCCCCHHHHHHHHHhhCCCCCCCCccCceEEecC
Confidence            5555555544444432  3456689999999999987432      22221  1334445677664      57899999


Q ss_pred             CCCcCHHHHHH-HHhh
Q 024315          253 WYRFELAETWR-ITKW  267 (269)
Q Consensus       253 ~~~~~~~~~~~-i~~~  267 (269)
                      +.+.+.++++. |.+.
T Consensus       151 ~~~~~~~ei~~~i~~~  166 (249)
T TIGR03574       151 TKKIDYNEILEEILEI  166 (249)
T ss_pred             CCCCCHHHHHHHHHHH
Confidence            76677777776 6554

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.26  E-value=1.4e-11  Score=133.01  Aligned_cols=133  Identities=19%  Similarity=0.215  Sum_probs=93.2

Q ss_pred             eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhH-------HHH
Q 024315           91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDR-------VEN  159 (269)
Q Consensus        91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~-------~~~  159 (269)
                      ..+++++++++|+.++|+|+||||||||+++|.|++.  .+|.|++||.++..    .++..+++.+|+-       +++
T Consensus      1234 vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~--~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~N 1311 (1490)
T TIGR01271      1234 VLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS--TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKN 1311 (1490)
T ss_pred             eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC--CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHH
Confidence            3466789999999999999999999999999999884  58999999998863    3444444444421       122


Q ss_pred             HHHH-----HHHHHHHHhC-----------Cccee----eccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcCh
Q 024315          160 IRRI-----GEVAKLFADA-----------GVICI----ACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDP  218 (269)
Q Consensus       160 ~~~l-----~~~a~~~~~~-----------g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~  218 (269)
                      +...     .++-..+...           |+...    ....+++++|| ..+|+++.++++  +.+|||++.+|....
T Consensus      1312 Ldp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~I--LlLDEaTS~lD~~Te 1389 (1490)
T TIGR01271      1312 LDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKI--LLLDEPSAHLDPVTL 1389 (1490)
T ss_pred             hCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCE--EEEeCCcccCCHHHH
Confidence            1100     0111111111           22222    22356777777 699999999999  999999999999888


Q ss_pred             hhHHHHHhc
Q 024315          219 KGLYKLARE  227 (269)
Q Consensus       219 k~l~~~~r~  227 (269)
                      +.+.+.++.
T Consensus      1390 ~~I~~~L~~ 1398 (1490)
T TIGR01271      1390 QIIRKTLKQ 1398 (1490)
T ss_pred             HHHHHHHHH
Confidence            887777664

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=99.25  E-value=2.6e-11  Score=112.94  Aligned_cols=132  Identities=22%  Similarity=0.281  Sum_probs=96.9

Q ss_pred             ccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhHH-------HHH
Q 024315           92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDRV-------ENI  160 (269)
Q Consensus        92 ~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~~-------~~~  160 (269)
                      ...++++++.|+.++++|+||+||||+++.|-+.+ +..+|.|.+||.+++.    .+++.+|..+|+..       .++
T Consensus       279 L~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFy-D~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni  357 (497)
T COG5265         279 LNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFY-DVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNI  357 (497)
T ss_pred             hcCccccccCccEEEEEeCCCCcHHHHHHHHHHHh-CCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHH
Confidence            35668999999999999999999999999999988 6779999999999873    56666777776431       111


Q ss_pred             H------------H---HHHHHHHHH------hCCcceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcCh
Q 024315          161 R------------R---IGEVAKLFA------DAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDP  218 (269)
Q Consensus       161 ~------------~---l~~~a~~~~------~~g~~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~  218 (269)
                      +            .   ..++...++      +.++-...-..+++++|| .++|.++++|++  +++||.+..++.+..
T Consensus       358 ~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~i--l~~deatsaldt~te  435 (497)
T COG5265         358 KYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPI--LILDEATSALDTHTE  435 (497)
T ss_pred             hccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCE--EEEehhhhHhhhhHH
Confidence            1            0   011111111      122223344557777777 699999999999  999999999999998


Q ss_pred             hhHHHHHh
Q 024315          219 KGLYKLAR  226 (269)
Q Consensus       219 k~l~~~~r  226 (269)
                      +.+...++
T Consensus       436 ~~iq~~l~  443 (497)
T COG5265         436 QAIQAALR  443 (497)
T ss_pred             HHHHHHHH
Confidence            88765544

>PRK13409 putative ATPase RIL; Provisional

Probab=99.25  E-value=2.3e-11  Score=120.44  Aligned_cols=144  Identities=21%  Similarity=0.220  Sum_probs=95.1

Q ss_pred             cceEEeeCce-eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEE-----------ECCeecCcc---
Q 024315           80 TNILWHKNSV-DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYI-----------LDGDNCRHG---  144 (269)
Q Consensus        80 ~~~~~~~~~v-~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~-----------l~g~~~~~~---  144 (269)
                      .++...++.. .+..+.+ .+++|++++|+|+||||||||+++|+|.+. |..|.|.           ++|.++...   
T Consensus        77 ~~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~-p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~  154 (590)
T PRK13409         77 EEPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELI-PNLGDYEEEPSWDEVLKRFRGTELQNYFKK  154 (590)
T ss_pred             cCceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCcc-CCCccccCCCcHHHHHHHhCChHHHHHHHH
Confidence            4466666543 3678888 899999999999999999999999999884 6688886           777665320   


Q ss_pred             c---ccCCC----CChhh-------HHHHHHH---HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCcc
Q 024315          145 L---NRDLS----FKAED-------RVENIRR---IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFI  202 (269)
Q Consensus       145 l---~~~~g----~~~~~-------~~~~~~~---l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~  202 (269)
                      +   ...++    +..+.       ..+.+..   ...+..++...++..    .+..+++++++| .++++++.++++ 
T Consensus       155 ~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~l-  233 (590)
T PRK13409        155 LYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADF-  233 (590)
T ss_pred             HhccCcceeecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE-
Confidence            0   01111    11110       0111110   112233344444432    234456777776 688999999999 


Q ss_pred             EEEEeCChhHHHhcChhhHHHHHhc
Q 024315          203 EVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       203 ~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                       +++|||+..++......+.+.++.
T Consensus       234 -llLDEPts~LD~~~~~~l~~~i~~  257 (590)
T PRK13409        234 -YFFDEPTSYLDIRQRLNVARLIRE  257 (590)
T ss_pred             -EEEECCCCCCCHHHHHHHHHHHHH
Confidence             999999999999988887765553

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.25  E-value=4.3e-11  Score=115.56  Aligned_cols=136  Identities=24%  Similarity=0.272  Sum_probs=95.2

Q ss_pred             eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCC---ccEEEECCeecCc-------ccc-cCCCCChhhHH
Q 024315           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG---KLTYILDGDNCRH-------GLN-RDLSFKAEDRV  157 (269)
Q Consensus        89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~---~g~i~l~g~~~~~-------~l~-~~~g~~~~~~~  157 (269)
                      +.+.+++||.+.+||+++|+|.|||||||++++|.+.++..+   +|.|.++|.++..       .++ +.+++..|+-.
T Consensus        22 ~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~  101 (539)
T COG1123          22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM  101 (539)
T ss_pred             eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCch
Confidence            567899999999999999999999999999999999997553   7999999986542       111 12222222210


Q ss_pred             --------------HHHH---------HHHHHHHHHHhCCcce------eeccCChHHHHHH-HHHHhCCCCCccEEEEe
Q 024315          158 --------------ENIR---------RIGEVAKLFADAGVIC------IACLISPYRKDRD-ACRSMLPEGDFIEVFMD  207 (269)
Q Consensus       158 --------------~~~~---------~l~~~a~~~~~~g~~~------iv~~~~~~~~~r~-~ar~ll~~~~~~~i~ld  207 (269)
                                    +.+.         ...+...++...++-.      +.-.+|++++||. ++++++.+|++  +..|
T Consensus       102 ~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~L--LIaD  179 (539)
T COG1123         102 TSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKL--LIAD  179 (539)
T ss_pred             hhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCE--EEEC
Confidence                          1100         1112233444444422      3334577888885 89999999998  9999


Q ss_pred             CChhHHHhcChhhHHHHHh
Q 024315          208 VPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       208 ~p~~~l~~R~~k~l~~~~r  226 (269)
                      ||+-.++...++.+.+.++
T Consensus       180 EPTTaLDvt~q~qIL~llk  198 (539)
T COG1123         180 EPTTALDVTTQAQILDLLK  198 (539)
T ss_pred             CCccccCHHHHHHHHHHHH
Confidence            9999999988888665555

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.25  E-value=3e-11  Score=129.61  Aligned_cols=135  Identities=16%  Similarity=0.227  Sum_probs=92.5

Q ss_pred             eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc--CCccEEEECCeecCcccccCCCCChhhH--------HHH
Q 024315           90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW--RGKLTYILDGDNCRHGLNRDLSFKAEDR--------VEN  159 (269)
Q Consensus        90 ~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~--~~~g~i~l~g~~~~~~l~~~~g~~~~~~--------~~~  159 (269)
                      ...+++++.+++|++++|+|+||||||||+++|++++..  +.+|.|.++|.++...+++.++|.+|+.        ++.
T Consensus       777 ~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~E~  856 (1394)
T TIGR00956       777 VILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRES  856 (1394)
T ss_pred             EeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHHHH
Confidence            356778999999999999999999999999999998742  4569999999887544444445444321        111


Q ss_pred             HHH---------------HHHHHHHHHhCCcce----eec----cCChHHHHH-HHHHHhCCCCC-ccEEEEeCChhHHH
Q 024315          160 IRR---------------IGEVAKLFADAGVIC----IAC----LISPYRKDR-DACRSMLPEGD-FIEVFMDVPLQVCE  214 (269)
Q Consensus       160 ~~~---------------l~~~a~~~~~~g~~~----iv~----~~~~~~~~r-~~ar~ll~~~~-~~~i~ld~p~~~l~  214 (269)
                      +..               ...+..++...++..    .+.    ..++++++| .++++++.+++ +  +++|||+..+|
T Consensus       857 L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~i--LlLDEPTsgLD  934 (1394)
T TIGR00956       857 LRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLL--LFLDEPTSGLD  934 (1394)
T ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeE--EEEcCCCCCCC
Confidence            110               011223333334422    121    356666666 69999999996 7  89999999999


Q ss_pred             hcChhhHHHHHh
Q 024315          215 ARDPKGLYKLAR  226 (269)
Q Consensus       215 ~R~~k~l~~~~r  226 (269)
                      ......+.+.++
T Consensus       935 ~~~~~~i~~~L~  946 (1394)
T TIGR00956       935 SQTAWSICKLMR  946 (1394)
T ss_pred             HHHHHHHHHHHH
Confidence            988777554443

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.25  E-value=5.2e-11  Score=104.11  Aligned_cols=134  Identities=19%  Similarity=0.082  Sum_probs=87.7

Q ss_pred             eCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCCh------------
Q 024315           86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKA------------  153 (269)
Q Consensus        86 ~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~------------  153 (269)
                      ...+.+.++++|++.+|+.++|+|.||||||||++.|++.+ +|.+|.+.++|+-.. .+.-..||.+            
T Consensus        37 ~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~-~Pt~G~v~v~G~v~~-li~lg~Gf~pelTGreNi~l~~  114 (249)
T COG1134          37 VAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIY-KPTSGKVKVTGKVAP-LIELGAGFDPELTGRENIYLRG  114 (249)
T ss_pred             cceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCcc-CCCCceEEEcceEeh-hhhcccCCCcccchHHHHHHHH
Confidence            34677889999999999999999999999999999999999 577999999997542 1111223333            


Q ss_pred             -------hhHHHHHHHHHHHHHHHHhCCcceeeccCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHH
Q 024315          154 -------EDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL  224 (269)
Q Consensus       154 -------~~~~~~~~~l~~~a~~~~~~g~~~iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~  224 (269)
                             ++..+....+.+.+.+ .++--..+-..++++..+....-+...++++  +++|+=+++-++.-.+...++
T Consensus       115 ~~~G~~~~ei~~~~~eIieFaEL-G~fi~~PvktYSSGM~aRLaFsia~~~~pdI--LllDEvlavGD~~F~~K~~~r  189 (249)
T COG1134         115 LILGLTRKEIDEKVDEIIEFAEL-GDFIDQPVKTYSSGMYARLAFSVATHVEPDI--LLLDEVLAVGDAAFQEKCLER  189 (249)
T ss_pred             HHhCccHHHHHHHHHHHHHHHHH-HHHhhCchhhccHHHHHHHHHhhhhhcCCCE--EEEehhhhcCCHHHHHHHHHH
Confidence                   2222222222222211 1111123344556665555555555566777  899999998888776664433

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.23  E-value=7.1e-11  Score=116.11  Aligned_cols=145  Identities=14%  Similarity=0.079  Sum_probs=93.8

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee-cC---cccc-cCCCCChh
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN-CR---HGLN-RDLSFKAE  154 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~-~~---~~l~-~~~g~~~~  154 (269)
                      .++++.+......+++++.+++|++++|+|+||||||||+++|++.+ .+.+|.|.+++.. +.   .... -...++..
T Consensus       326 ~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~-~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~  404 (552)
T TIGR03719       326 ENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQE-QPDSGTIKIGETVKLAYVDQSRDALDPNKTVW  404 (552)
T ss_pred             eeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CCCCeEEEECCceEEEEEeCCccccCCCCcHH
Confidence            34555554445667889999999999999999999999999999987 4668888885431 11   0000 00011111


Q ss_pred             hHHHHHH-------HHHHHHHHHHhCCcce-----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhH
Q 024315          155 DRVENIR-------RIGEVAKLFADAGVIC-----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGL  221 (269)
Q Consensus       155 ~~~~~~~-------~l~~~a~~~~~~g~~~-----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l  221 (269)
                      +......       ........+...++..     .+...|+++++| ..++.++.++++  +++|||+..++....+.+
T Consensus       405 e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~l--llLDEPt~~LD~~~~~~l  482 (552)
T TIGR03719       405 EEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNV--LLLDEPTNDLDVETLRAL  482 (552)
T ss_pred             HHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCE--EEEeCCCCCCCHHHHHHH
Confidence            1110000       0001112333444421     234556777776 689999999999  999999999999998888


Q ss_pred             HHHHhc
Q 024315          222 YKLARE  227 (269)
Q Consensus       222 ~~~~r~  227 (269)
                      .+.+++
T Consensus       483 ~~~l~~  488 (552)
T TIGR03719       483 EEALLE  488 (552)
T ss_pred             HHHHHH
Confidence            877765

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.23  E-value=5.1e-11  Score=119.02  Aligned_cols=144  Identities=16%  Similarity=0.090  Sum_probs=94.7

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCe-ecCcccccC--CCCChh-h
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD-NCRHGLNRD--LSFKAE-D  155 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~-~~~~~l~~~--~g~~~~-~  155 (269)
                      .++++.+......+++++.+.+|++++|+||||||||||+++|+|.+ .+.+|.|.+++. .+.. +...  ..+... .
T Consensus       316 ~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~-~p~~G~i~~~~~~~igy-~~Q~~~~~l~~~~~  393 (638)
T PRK10636        316 EKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGEL-APVSGEIGLAKGIKLGY-FAQHQLEFLRADES  393 (638)
T ss_pred             EeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCeEEECCCEEEEE-ecCcchhhCCccch
Confidence            35555555555678899999999999999999999999999999988 466889888642 2211 0000  001110 0


Q ss_pred             HHHHHHH------HHHHHHHHHhCCcc-----eeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHH
Q 024315          156 RVENIRR------IGEVAKLFADAGVI-----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK  223 (269)
Q Consensus       156 ~~~~~~~------l~~~a~~~~~~g~~-----~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~  223 (269)
                      ....+..      ...+...+...++.     ..+..+|+++++| ..++.++.++++  +++|+|+..++......+.+
T Consensus       394 ~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~l--LlLDEPt~~LD~~~~~~l~~  471 (638)
T PRK10636        394 PLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNL--LLLDEPTNHLDLDMRQALTE  471 (638)
T ss_pred             HHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCE--EEEcCCCCCCCHHHHHHHHH
Confidence            0111110      01122333444442     1244557777777 688999999999  99999999999998888877


Q ss_pred             HHhc
Q 024315          224 LARE  227 (269)
Q Consensus       224 ~~r~  227 (269)
                      .+++
T Consensus       472 ~L~~  475 (638)
T PRK10636        472 ALID  475 (638)
T ss_pred             HHHH
Confidence            7664

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.23  E-value=6.2e-11  Score=115.48  Aligned_cols=143  Identities=18%  Similarity=0.132  Sum_probs=94.0

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChh-----
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE-----  154 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~-----  154 (269)
                      .++++.++.....+++++.+.+|+.++|+|+||+|||||+++|+|.+ .+..|.|...+.....-+..+....+.     
T Consensus         7 ~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~-~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~   85 (530)
T COG0488           7 ENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGEL-EPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLD   85 (530)
T ss_pred             eeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCC-cCCCCeEeecCCceEEEeCCCCCcCCCccHHH
Confidence            46777777888889999999999999999999999999999999998 466888887764211111111111110     


Q ss_pred             -------hHHHHHH---HH----------------------------HHHHHHHHhCCcce---eeccCChHHHHH-HHH
Q 024315          155 -------DRVENIR---RI----------------------------GEVAKLFADAGVIC---IACLISPYRKDR-DAC  192 (269)
Q Consensus       155 -------~~~~~~~---~l----------------------------~~~a~~~~~~g~~~---iv~~~~~~~~~r-~~a  192 (269)
                             +..+..+   .+                            .++..++...|...   -+..++++.+.| ..+
T Consensus        86 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~Rv~LA  165 (530)
T COG0488          86 YVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALA  165 (530)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHHHHHHH
Confidence                   0000000   00                            12223333444432   234456777777 689


Q ss_pred             HHhCCCCCccEEEEeCChhHHHhcChhhHHHHH
Q 024315          193 RSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (269)
Q Consensus       193 r~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~  225 (269)
                      +.++.+|++  +++|||++.|+-....=|...+
T Consensus       166 ~aL~~~pDl--LLLDEPTNHLD~~~i~WLe~~L  196 (530)
T COG0488         166 RALLEEPDL--LLLDEPTNHLDLESIEWLEDYL  196 (530)
T ss_pred             HHHhcCCCE--EEEcCCCcccCHHHHHHHHHHH
Confidence            999999999  9999999999876655444444

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.23  E-value=3.3e-11  Score=131.73  Aligned_cols=144  Identities=13%  Similarity=0.125  Sum_probs=100.1

Q ss_pred             cceEEeeCc--eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc---ccccCCCCChh
Q 024315           80 TNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH---GLNRDLSFKAE  154 (269)
Q Consensus        80 ~~~~~~~~~--v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~---~l~~~~g~~~~  154 (269)
                      .++...+..  ..+.+++++.+++|++++|+|+||||||||+++|+|.+ .+.+|.|.++|.++..   ..++.+||.+|
T Consensus      1941 ~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll-~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ 2019 (2272)
T TIGR01257      1941 NELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDT-TVTSGDATVAGKSILTNISDVHQNMGYCPQ 2019 (2272)
T ss_pred             EEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCC-CCCccEEEECCEECcchHHHHhhhEEEEec
Confidence            355555543  55778899999999999999999999999999999988 4678999999988742   12233444433


Q ss_pred             h-----------HHHHHHHH--------HH-HHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCC
Q 024315          155 D-----------RVENIRRI--------GE-VAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVP  209 (269)
Q Consensus       155 ~-----------~~~~~~~l--------~~-~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p  209 (269)
                      .           ......++        .+ +...+...++..    .+...++++++| ..+++++.++++  +++|||
T Consensus      2020 ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~V--LLLDEP 2097 (2272)
T TIGR01257      2020 FDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPL--VLLDEP 2097 (2272)
T ss_pred             cccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCE--EEEECC
Confidence            2           11111111        11 112344445432    234456666666 699999999999  999999


Q ss_pred             hhHHHhcChhhHHHHHh
Q 024315          210 LQVCEARDPKGLYKLAR  226 (269)
Q Consensus       210 ~~~l~~R~~k~l~~~~r  226 (269)
                      +..++...++.+.+.++
T Consensus      2098 TsGLDp~sr~~l~~lL~ 2114 (2272)
T TIGR01257      2098 TTGMDPQARRMLWNTIV 2114 (2272)
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            99999999888665543

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.23  E-value=5.1e-11  Score=107.80  Aligned_cols=130  Identities=18%  Similarity=0.195  Sum_probs=80.9

Q ss_pred             eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC--c--cccc-----CCCCCh---hhH-
Q 024315           90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR--H--GLNR-----DLSFKA---EDR-  156 (269)
Q Consensus        90 ~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~--~--~l~~-----~~g~~~---~~~-  156 (269)
                      ...+.+++.+++|++++|+|+||||||||+++|++.+ ++.+|.|.++|.-..  .  .+..     .+.+..   +.. 
T Consensus        51 ~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~-~p~~G~I~i~g~i~yv~q~~~l~~~tv~enl~~~~~~~~~~~  129 (282)
T cd03291          51 PVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGEL-EPSEGKIKHSGRISFSSQFSWIMPGTIKENIIFGVSYDEYRY  129 (282)
T ss_pred             cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEEEEEeCcccccccCHHHHhhcccccCHHHH
Confidence            3567889999999999999999999999999999988 466889988873110  0  0000     000100   000 


Q ss_pred             HHHHHHHHHHHHHHHhCC--cc----eeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHH
Q 024315          157 VENIRRIGEVAKLFADAG--VI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK  223 (269)
Q Consensus       157 ~~~~~~l~~~a~~~~~~g--~~----~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~  223 (269)
                      ....... .+...+....  ..    ......++++++| ..+++++.++++  +++|+|+..++....+.+++
T Consensus       130 ~~~l~~~-~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~i--LiLDEPt~gLD~~~~~~l~~  200 (282)
T cd03291         130 KSVVKAC-QLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADL--YLLDSPFGYLDVFTEKEIFE  200 (282)
T ss_pred             HHHHHHh-CCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCE--EEEECCCccCCHHHHHHHHH
Confidence            0000000 0001111100  00    0123456666666 688999999999  99999999999888776654

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.23  E-value=8.1e-11  Score=115.80  Aligned_cols=145  Identities=14%  Similarity=0.080  Sum_probs=94.2

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee-cC---ccc-ccCCCCChh
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN-CR---HGL-NRDLSFKAE  154 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~-~~---~~l-~~~~g~~~~  154 (269)
                      .++.+.+......+++++.+.+|++++|+|+||||||||++.|++.+ .+.+|.|.+++.. +.   ... .-...++..
T Consensus       328 ~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~-~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~  406 (556)
T PRK11819        328 ENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQE-QPDSGTIKIGETVKLAYVDQSRDALDPNKTVW  406 (556)
T ss_pred             EeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCceEEEEEeCchhhcCCCCCHH
Confidence            34555555555678889999999999999999999999999999987 4668898885431 11   000 000011111


Q ss_pred             hHHHHHH-------HHHHHHHHHHhCCcce-----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhH
Q 024315          155 DRVENIR-------RIGEVAKLFADAGVIC-----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGL  221 (269)
Q Consensus       155 ~~~~~~~-------~l~~~a~~~~~~g~~~-----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l  221 (269)
                      +......       ........+...++..     .+...|+++++| ..+++++.++++  +++|||+..++....+.+
T Consensus       407 e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~l--llLDEPt~~LD~~~~~~l  484 (556)
T PRK11819        407 EEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNV--LLLDEPTNDLDVETLRAL  484 (556)
T ss_pred             HHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCE--EEEcCCCCCCCHHHHHHH
Confidence            1110000       0001112333444421     234557777777 688999999999  999999999999998888


Q ss_pred             HHHHhc
Q 024315          222 YKLARE  227 (269)
Q Consensus       222 ~~~~r~  227 (269)
                      ++.++.
T Consensus       485 ~~~l~~  490 (556)
T PRK11819        485 EEALLE  490 (556)
T ss_pred             HHHHHh
Confidence            877765

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=99.22  E-value=4.1e-11  Score=119.95  Aligned_cols=144  Identities=21%  Similarity=0.262  Sum_probs=96.2

Q ss_pred             cceEEeeC----ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----cc----cc
Q 024315           80 TNILWHKN----SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GL----NR  147 (269)
Q Consensus        80 ~~~~~~~~----~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l----~~  147 (269)
                      .++++.+.    .....+.+++++++|++++|+|+||||||||+++|++.+ ++.+|.+.++|.++..    .+    +.
T Consensus         8 ~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~-~~~~G~i~~~g~~i~~~~~~~~~~~~~~   86 (648)
T PRK10535          8 KDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLD-KPTSGTYRVAGQDVATLDADALAQLRRE   86 (648)
T ss_pred             eeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCeEEEECCEEcCcCCHHHHHHHHhc
Confidence            34555542    144678889999999999999999999999999999988 4678999999988652    00    12


Q ss_pred             CCCCChhhH--------HHHHH------------HHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCcc
Q 024315          148 DLSFKAEDR--------VENIR------------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFI  202 (269)
Q Consensus       148 ~~g~~~~~~--------~~~~~------------~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~  202 (269)
                      .++|.+++.        .+++.            ...+....+...++..    .....++++++| ..+++++.++++ 
T Consensus        87 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~l-  165 (648)
T PRK10535         87 HFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQV-  165 (648)
T ss_pred             cEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCE-
Confidence            222222211        11110            0011222333334322    223346666666 699999999999 


Q ss_pred             EEEEeCChhHHHhcChhhHHHHHh
Q 024315          203 EVFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       203 ~i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                       +++|||+..++....+.+.+.++
T Consensus       166 -LllDEP~~gLD~~s~~~l~~ll~  188 (648)
T PRK10535        166 -ILADEPTGALDSHSGEEVMAILH  188 (648)
T ss_pred             -EEEECCCCCCCHHHHHHHHHHHH
Confidence             99999999999999888765544

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=99.22  E-value=3.6e-11  Score=119.72  Aligned_cols=138  Identities=17%  Similarity=0.201  Sum_probs=93.7

Q ss_pred             ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccC--CccEEEECCeecCc-ccccCCCCChhhH--------
Q 024315           88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR--GKLTYILDGDNCRH-GLNRDLSFKAEDR--------  156 (269)
Q Consensus        88 ~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~--~~g~i~l~g~~~~~-~l~~~~g~~~~~~--------  156 (269)
                      .....+++++.+++|++++|+|+||||||||+++|+++..+.  .+|.|.++|.++.. .+++..+|.+|+.        
T Consensus        37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV  116 (617)
T TIGR00955        37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV  116 (617)
T ss_pred             ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcH
Confidence            344678889999999999999999999999999999987532  26899999987641 2222233333221        


Q ss_pred             HHHHH---------------HHHHHHHHHHhCCcce-----ee-----ccCChHHHHH-HHHHHhCCCCCccEEEEeCCh
Q 024315          157 VENIR---------------RIGEVAKLFADAGVIC-----IA-----CLISPYRKDR-DACRSMLPEGDFIEVFMDVPL  210 (269)
Q Consensus       157 ~~~~~---------------~l~~~a~~~~~~g~~~-----iv-----~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~  210 (269)
                      ++++.               ....+...+...++..     +.     ...++++++| ..+++++.++++  +++|+|+
T Consensus       117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~v--lllDEPt  194 (617)
T TIGR00955       117 REHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPL--LFCDEPT  194 (617)
T ss_pred             HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCE--EEeeCCC
Confidence            11110               1112333444444421     11     1356666666 699999999999  9999999


Q ss_pred             hHHHhcChhhHHHHHhc
Q 024315          211 QVCEARDPKGLYKLARE  227 (269)
Q Consensus       211 ~~l~~R~~k~l~~~~r~  227 (269)
                      ..+|......+.+.+++
T Consensus       195 sgLD~~~~~~l~~~L~~  211 (617)
T TIGR00955       195 SGLDSFMAYSVVQVLKG  211 (617)
T ss_pred             cchhHHHHHHHHHHHHH
Confidence            99999998887655543

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.22  E-value=3.1e-11  Score=131.88  Aligned_cols=144  Identities=15%  Similarity=0.197  Sum_probs=99.7

Q ss_pred             cceEEeeC--ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc---cccCCCCChh
Q 024315           80 TNILWHKN--SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---LNRDLSFKAE  154 (269)
Q Consensus        80 ~~~~~~~~--~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~---l~~~~g~~~~  154 (269)
                      .++...+.  ...+.++.++.+.+|++++|+|+||||||||+++|+|.+ .|.+|.+.++|.++...   .++.+++.+|
T Consensus       932 ~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl-~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ 1010 (2272)
T TIGR01257       932 KNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLL-PPTSGTVLVGGKDIETNLDAVRQSLGMCPQ 1010 (2272)
T ss_pred             EeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCC-CCCceEEEECCEECcchHHHHhhcEEEEec
Confidence            34555542  355678899999999999999999999999999999988 46789999999887531   2233333332


Q ss_pred             h-----------HHHHHHHH---------HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCC
Q 024315          155 D-----------RVENIRRI---------GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVP  209 (269)
Q Consensus       155 ~-----------~~~~~~~l---------~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p  209 (269)
                      +           ......++         .++...+...++..    .+...++++++| ..+++++.++++  +++|||
T Consensus      1011 ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkV--LLLDEP 1088 (2272)
T TIGR01257      1011 HNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKV--VVLDEP 1088 (2272)
T ss_pred             CCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEECC
Confidence            1           11111110         11233444555532    234456676666 699999999999  999999


Q ss_pred             hhHHHhcChhhHHHHHh
Q 024315          210 LQVCEARDPKGLYKLAR  226 (269)
Q Consensus       210 ~~~l~~R~~k~l~~~~r  226 (269)
                      +..++...++.+.+.++
T Consensus      1089 TSGLDp~sr~~l~~lL~ 1105 (2272)
T TIGR01257      1089 TSGVDPYSRRSIWDLLL 1105 (2272)
T ss_pred             CcCCCHHHHHHHHHHHH
Confidence            99999998887665544

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK13409 putative ATPase RIL; Provisional

Probab=99.21  E-value=1.1e-10  Score=115.69  Aligned_cols=141  Identities=16%  Similarity=0.089  Sum_probs=89.7

Q ss_pred             ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC---cccccCCCCChhhHH
Q 024315           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR---HGLNRDLSFKAEDRV  157 (269)
Q Consensus        81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~---~~l~~~~g~~~~~~~  157 (269)
                      ++++.+..+. .+..++.+++|++++|+|+||||||||+++|+|.+ .+.+|.|.++ ..+.   .........+..+..
T Consensus       345 ~ls~~~~~~~-l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~-~p~~G~I~~~-~~i~y~~Q~~~~~~~~tv~e~l  421 (590)
T PRK13409        345 DLTKKLGDFS-LEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVL-KPDEGEVDPE-LKISYKPQYIKPDYDGTVEDLL  421 (590)
T ss_pred             ceEEEECCEE-EEecceEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEEe-eeEEEecccccCCCCCcHHHHH
Confidence            3444443332 45678899999999999999999999999999988 4667888775 1111   010001111221111


Q ss_pred             HHHH-H---HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315          158 ENIR-R---IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       158 ~~~~-~---l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      .... .   -......+...++..    .+..+|+++++| ..+++++.++++  +++|||+..++...+..+++.++
T Consensus       422 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~l--lLLDEPt~~LD~~~~~~l~~~l~  497 (590)
T PRK13409        422 RSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADL--YLLDEPSAHLDVEQRLAVAKAIR  497 (590)
T ss_pred             HHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCE--EEEeCCccCCCHHHHHHHHHHHH
Confidence            1100 0   001122334444422    244567777777 688999999999  99999999999998888776655

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.20  E-value=4.7e-11  Score=105.87  Aligned_cols=133  Identities=18%  Similarity=0.203  Sum_probs=84.1

Q ss_pred             CceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc----c---------cc--CCCC
Q 024315           87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----L---------NR--DLSF  151 (269)
Q Consensus        87 ~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~----l---------~~--~~g~  151 (269)
                      ..+.+..+.||.+++|++++++|+||+||||++|.|.|++. |.+|.+.++|.+-...    +         +.  .|..
T Consensus        35 ~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~-p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdl  113 (325)
T COG4586          35 RSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL-PTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDL  113 (325)
T ss_pred             hhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccc-cCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeec
Confidence            45668889999999999999999999999999999999985 6689999998653210    0         00  0011


Q ss_pred             ChhhHHHHH------------HHHHHHHHHHHhCC-cceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcC
Q 024315          152 KAEDRVENI------------RRIGEVAKLFADAG-VICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD  217 (269)
Q Consensus       152 ~~~~~~~~~------------~~l~~~a~~~~~~g-~~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~  217 (269)
                      ...+-.+..            .++.....++.-.+ +..-+..++.++++| +.+.+++..+++  +|+|||+=.++--.
T Consensus       114 p~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~V--LfLDEpTvgLDV~a  191 (325)
T COG4586         114 PALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKV--LFLDEPTVGLDVNA  191 (325)
T ss_pred             hhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcE--EEecCCccCcchhH
Confidence            111111111            11111111111000 111233456677777 688889999888  99999998887655


Q ss_pred             hhhHH
Q 024315          218 PKGLY  222 (269)
Q Consensus       218 ~k~l~  222 (269)
                      +.++.
T Consensus       192 q~~ir  196 (325)
T COG4586         192 QANIR  196 (325)
T ss_pred             HHHHH
Confidence            44433

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.18  E-value=4.4e-11  Score=99.61  Aligned_cols=140  Identities=20%  Similarity=0.256  Sum_probs=93.1

Q ss_pred             eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCccc------------ccCCCCChhhH
Q 024315           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL------------NRDLSFKAEDR  156 (269)
Q Consensus        89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l------------~~~~g~~~~~~  156 (269)
                      ....++++|++..||.+++-|+||+||||+++.|-+.+. +.+|.|++....-.-++            +.-+||..|-.
T Consensus        24 LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~-~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFL  102 (235)
T COG4778          24 LPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYL-PDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFL  102 (235)
T ss_pred             eeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccC-CCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHH
Confidence            345688999999999999999999999999999999884 66888888654322111            12234444422


Q ss_pred             HHHHHH---H------------------HHHHHHHHhCCcce----e-eccCChHHHHH-HHHHHhCCCCCccEEEEeCC
Q 024315          157 VENIRR---I------------------GEVAKLFADAGVIC----I-ACLISPYRKDR-DACRSMLPEGDFIEVFMDVP  209 (269)
Q Consensus       157 ~~~~~~---l------------------~~~a~~~~~~g~~~----i-v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p  209 (269)
                      + .+-+   +                  .+...++...++-.    + .+..+++++|| .++|.++.+-++  +++|+|
T Consensus       103 R-viPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pI--LLLDEP  179 (235)
T COG4778         103 R-VIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPI--LLLDEP  179 (235)
T ss_pred             H-hccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCce--EEecCC
Confidence            1 0000   0                  11222333333321    1 22235566666 699999988777  899999


Q ss_pred             hhHHHhcChhhHHHHHhcCcccc
Q 024315          210 LQVCEARDPKGLYKLAREGKVKG  232 (269)
Q Consensus       210 ~~~l~~R~~k~l~~~~r~g~~~~  232 (269)
                      +..++..+++-..+.+++.+..+
T Consensus       180 TasLDa~Nr~vVveli~e~Ka~G  202 (235)
T COG4778         180 TASLDATNRAVVVELIREAKARG  202 (235)
T ss_pred             cccccccchHHHHHHHHHHHhcC
Confidence            99999999888777777666555

>PLN03073 ABC transporter F family; Provisional

Probab=99.16  E-value=3.1e-10  Score=114.58  Aligned_cols=145  Identities=14%  Similarity=0.060  Sum_probs=91.4

Q ss_pred             cceEEeeC-ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee-cC---cccccCCCCChh
Q 024315           80 TNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN-CR---HGLNRDLSFKAE  154 (269)
Q Consensus        80 ~~~~~~~~-~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~-~~---~~l~~~~g~~~~  154 (269)
                      .++.+.+. .....+.++|.+++|++++|+|+||||||||+++|++.+ .+.+|.|.+++.. +.   ......+.....
T Consensus       512 ~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll-~p~~G~I~~~~~~~igyv~Q~~~~~l~~~~~  590 (718)
T PLN03073        512 SDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGEL-QPSSGTVFRSAKVRMAVFSQHHVDGLDLSSN  590 (718)
T ss_pred             EeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCCceEEECCceeEEEEeccccccCCcchh
Confidence            34555442 223467789999999999999999999999999999988 4667888876531 10   000000001100


Q ss_pred             hHHHHHHH-----HHHHHHHHHhCCcce-----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHH
Q 024315          155 DRVENIRR-----IGEVAKLFADAGVIC-----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK  223 (269)
Q Consensus       155 ~~~~~~~~-----l~~~a~~~~~~g~~~-----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~  223 (269)
                      ........     -..+...+...++..     .+..+|+++++| ..++.++.++++  +++|||+..++......+.+
T Consensus       591 ~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~l--LLLDEPT~~LD~~s~~~l~~  668 (718)
T PLN03073        591 PLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI--LLLDEPSNHLDLDAVEALIQ  668 (718)
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCE--EEEcCCCCCCCHHHHHHHHH
Confidence            00000000     011223344444431     234557777777 688999999999  99999999999988777766


Q ss_pred             HHhc
Q 024315          224 LARE  227 (269)
Q Consensus       224 ~~r~  227 (269)
                      .++.
T Consensus       669 ~L~~  672 (718)
T PLN03073        669 GLVL  672 (718)
T ss_pred             HHHH
Confidence            6553

>PLN03073 ABC transporter F family; Provisional

Probab=99.16  E-value=1.2e-10  Score=117.56  Aligned_cols=146  Identities=15%  Similarity=0.108  Sum_probs=90.9

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhh--ccCCccEEEECCeecCc-cc-----------
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL--HWRGKLTYILDGDNCRH-GL-----------  145 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l--~~~~~g~i~l~g~~~~~-~l-----------  145 (269)
                      .++++.++.....+.++|++.+|+.++|+|+||||||||+++|++..  ..+.+|.|.+....+.. ..           
T Consensus       181 ~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~  260 (718)
T PLN03073        181 ENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDI  260 (718)
T ss_pred             ceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhH
Confidence            46677776666788999999999999999999999999999999853  12445666543322110 00           


Q ss_pred             ------ccCCCCChh---------------------hHHHHHHHHHH----------------HHHHHHhCCcc-----e
Q 024315          146 ------NRDLSFKAE---------------------DRVENIRRIGE----------------VAKLFADAGVI-----C  177 (269)
Q Consensus       146 ------~~~~g~~~~---------------------~~~~~~~~l~~----------------~a~~~~~~g~~-----~  177 (269)
                            ....++..+                     .......++.+                ...++...|+.     .
T Consensus       261 ~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~  340 (718)
T PLN03073        261 ERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVK  340 (718)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhC
Confidence                  000000000                     00000111111                11222333331     1


Q ss_pred             eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          178 IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       178 iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      .+..+++++++| .+++.++.++++  +++|||+..++....+.+.+.++.
T Consensus       341 ~~~~LSgG~k~rv~LA~aL~~~p~l--LlLDEPt~~LD~~~~~~l~~~L~~  389 (718)
T PLN03073        341 ATKTFSGGWRMRIALARALFIEPDL--LLLDEPTNHLDLHAVLWLETYLLK  389 (718)
T ss_pred             chhhCCHHHHHHHHHHHHHhcCCCE--EEEECCCCCCCHHHHHHHHHHHHH
Confidence            233456666666 688999999999  999999999999988888777665

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.15  E-value=3.2e-10  Score=105.10  Aligned_cols=140  Identities=19%  Similarity=0.173  Sum_probs=85.6

Q ss_pred             eEEeeCceeeccC------cceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCccc----------
Q 024315           82 ILWHKNSVDKRDR------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----------  145 (269)
Q Consensus        82 ~~~~~~~v~~~~r------~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l----------  145 (269)
                      ++++++.+.+.+.      +++++++||++.|+|.|||||||+++.|.|++ .|.+|.|++||.++...-          
T Consensus       323 lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~-~PqsG~I~ldg~pV~~e~ledYR~LfSa  401 (546)
T COG4615         323 LELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLY-QPQSGEILLDGKPVSAEQLEDYRKLFSA  401 (546)
T ss_pred             eeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhccc-CCCCCceeECCccCCCCCHHHHHHHHHH
Confidence            4555555555544      58999999999999999999999999999977 677999999999886210          


Q ss_pred             -------ccC----CC-CChhhHHHHHHHHHHHHHHHHhCCcceeeccCChHHHHHHHHHHhCCCCCccEEEEeCChhHH
Q 024315          146 -------NRD----LS-FKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVC  213 (269)
Q Consensus       146 -------~~~----~g-~~~~~~~~~~~~l~~~a~~~~~~g~~~iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l  213 (269)
                             ...    -+ -+++....+..++.-....-...+.......+.+.++.....-+++++.++  +.+||=.+.-
T Consensus       402 vFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~I--lv~DEWAADQ  479 (546)
T COG4615         402 VFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDI--LVLDEWAADQ  479 (546)
T ss_pred             HhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCe--EEeehhhccC
Confidence                   000    01 122222233333221111111222222333344444444788888888888  6777766655


Q ss_pred             HhcChhhHHHH
Q 024315          214 EARDPKGLYKL  224 (269)
Q Consensus       214 ~~R~~k~l~~~  224 (269)
                      ++.-++-+|+.
T Consensus       480 DPaFRR~FY~~  490 (546)
T COG4615         480 DPAFRREFYQV  490 (546)
T ss_pred             ChHHHHHHHHH
Confidence            55555555543

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.12  E-value=3.6e-10  Score=93.55  Aligned_cols=144  Identities=19%  Similarity=0.227  Sum_probs=96.5

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----------ccccCC
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----------GLNRDL  149 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----------~l~~~~  149 (269)
                      .++.+.++.-.+.-+.++....|+++.+.||||+|||||++.|.- |.-+.+|...+.+....-          .++.+.
T Consensus         6 ~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnl-le~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~v   84 (242)
T COG4161           6 NGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNL-LEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNV   84 (242)
T ss_pred             cccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHH-HhCCCCCeEEecccccccccCccHHHHHHHHHhh
Confidence            356667776667778899999999999999999999999998875 445678888887754321          344555


Q ss_pred             CCChhhHH--------HH-H---HH---------HHHHHHHHHhCCccee----eccCChHHHHH-HHHHHhCCCCCccE
Q 024315          150 SFKAEDRV--------EN-I---RR---------IGEVAKLFADAGVICI----ACLISPYRKDR-DACRSMLPEGDFIE  203 (269)
Q Consensus       150 g~~~~~~~--------~~-~---~~---------l~~~a~~~~~~g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~  203 (269)
                      |+..+...        ++ +   .+         ..+...++....+...    ...+++++++| .++|+++-++.+  
T Consensus        85 gmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqv--  162 (242)
T COG4161          85 GMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQV--  162 (242)
T ss_pred             hhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcE--
Confidence            55544321        00 0   00         0111223333333222    23446777777 699999999988  


Q ss_pred             EEEeCChhHHHhcChhhHHHHHh
Q 024315          204 VFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       204 i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      +++|+|...+++.......+.++
T Consensus       163 llfdeptaaldpeitaqvv~iik  185 (242)
T COG4161         163 LLFDEPTAALDPEITAQIVSIIK  185 (242)
T ss_pred             EeecCcccccCHHHHHHHHHHHH
Confidence            89999999999888777655544

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.11  E-value=2.6e-10  Score=113.37  Aligned_cols=136  Identities=22%  Similarity=0.275  Sum_probs=92.2

Q ss_pred             eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc--CCccEEEECCeecC-cccccCCCCChhhH---------
Q 024315           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW--RGKLTYILDGDNCR-HGLNRDLSFKAEDR---------  156 (269)
Q Consensus        89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~--~~~g~i~l~g~~~~-~~l~~~~g~~~~~~---------  156 (269)
                      .+...+++...++|++++|+||||||||||+++|+++...  .-+|.|.++|.... +..++..+|..|+-         
T Consensus        43 k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~  122 (613)
T KOG0061|consen   43 KTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVR  122 (613)
T ss_pred             ceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHH
Confidence            4556778999999999999999999999999999999863  24799999994432 22222223333211         


Q ss_pred             -----------------HHHHHHHHHHHHHHHhCCcce----ee-----ccCChHHHHH-HHHHHhCCCCCccEEEEeCC
Q 024315          157 -----------------VENIRRIGEVAKLFADAGVIC----IA-----CLISPYRKDR-DACRSMLPEGDFIEVFMDVP  209 (269)
Q Consensus       157 -----------------~~~~~~l~~~a~~~~~~g~~~----iv-----~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p  209 (269)
                                       .+...   .+..+....|+..    ++     .-.+++++.| ..+.+++.+|.+  +++|||
T Consensus       123 EtL~f~A~lrlp~~~~~~~k~~---~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~i--LflDEP  197 (613)
T KOG0061|consen  123 ETLRFSALLRLPSSLSKEEKRE---RVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSI--LFLDEP  197 (613)
T ss_pred             HHHHHHHHhcCCCCCCHHHHHH---HHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCE--EEecCC
Confidence                             11111   2233334444421    12     1245666666 699999999988  999999


Q ss_pred             hhHHHhcChhh----HHHHHhcCc
Q 024315          210 LQVCEARDPKG----LYKLAREGK  229 (269)
Q Consensus       210 ~~~l~~R~~k~----l~~~~r~g~  229 (269)
                      +..||......    +.+.+++|+
T Consensus       198 TSGLDS~sA~~vv~~Lk~lA~~gr  221 (613)
T KOG0061|consen  198 TSGLDSFSALQVVQLLKRLARSGR  221 (613)
T ss_pred             CCCcchhhHHHHHHHHHHHHhCCC
Confidence            99999988755    445566665

>PLN03140 ABC transporter G family member; Provisional

Probab=99.09  E-value=1.9e-10  Score=123.73  Aligned_cols=133  Identities=17%  Similarity=0.160  Sum_probs=87.6

Q ss_pred             eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc-CCccEEEECCeecCc-ccccCCCCChhhH--------HHHH
Q 024315           91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW-RGKLTYILDGDNCRH-GLNRDLSFKAEDR--------VENI  160 (269)
Q Consensus        91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~-~~~g~i~l~g~~~~~-~l~~~~g~~~~~~--------~~~~  160 (269)
                      ..+++++.+++|++++|+|+||||||||++.|+++... ..+|.+.++|.+... ..++..+|..|+.        .+.+
T Consensus       895 iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L  974 (1470)
T PLN03140        895 LLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESL  974 (1470)
T ss_pred             EeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHH
Confidence            34567899999999999999999999999999998632 236899999976532 1122223333221        1111


Q ss_pred             H---------------HHHHHHHHHHhCCcce----ee-----ccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHh
Q 024315          161 R---------------RIGEVAKLFADAGVIC----IA-----CLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEA  215 (269)
Q Consensus       161 ~---------------~l~~~a~~~~~~g~~~----iv-----~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~  215 (269)
                      .               ....+..++...++..    .+     ..+++++++| .++++++.++++  +++|||+..+|.
T Consensus       975 ~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~l--L~LDEPTsgLD~ 1052 (1470)
T PLN03140        975 IYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSI--IFMDEPTSGLDA 1052 (1470)
T ss_pred             HHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCE--EEEeCCCCCCCH
Confidence            0               0011222333334321    11     3456777777 699999999999  999999999999


Q ss_pred             cChhhHHHHH
Q 024315          216 RDPKGLYKLA  225 (269)
Q Consensus       216 R~~k~l~~~~  225 (269)
                      +....+.+.+
T Consensus      1053 ~~a~~v~~~L 1062 (1470)
T PLN03140       1053 RAAAIVMRTV 1062 (1470)
T ss_pred             HHHHHHHHHH
Confidence            8887755443

>COG0645 Predicted kinase [General function prediction only]

Probab=99.09  E-value=8.2e-10  Score=91.68  Aligned_cols=150  Identities=21%  Similarity=0.207  Sum_probs=108.0

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCccccc-----C---CCCChhhHHHHHHHHHHHHHHHHhC
Q 024315          102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNR-----D---LSFKAEDRVENIRRIGEVAKLFADA  173 (269)
Q Consensus       102 g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~-----~---~g~~~~~~~~~~~~l~~~a~~~~~~  173 (269)
                      +.++.+.|.+|+||||+++.|+..+.     .+.|..|.+++.|+.     .   -.|+++.-...+..+...+.+....
T Consensus         1 ~~l~l~~Gl~GsGKstlA~~l~~~lg-----A~~lrsD~irk~L~g~p~~~r~~~g~ys~~~~~~vy~~l~~~A~l~l~~   75 (170)
T COG0645           1 GRLVLVGGLPGSGKSTLARGLAELLG-----AIRLRSDVIRKRLFGVPEETRGPAGLYSPAATAAVYDELLGRAELLLSS   75 (170)
T ss_pred             CeEEEEecCCCccHhHHHHHHHhhcC-----ceEEehHHHHHHhcCCcccccCCCCCCcHHHHHHHHHHHHHHHHHHHhC
Confidence            35778899999999999999999874     578889999887765     2   2266666666777788888999999


Q ss_pred             CcceeeccCChHHHHHHHHHHhCCCC--CccEEEEeCChhHHHhcChhhHHHHHhcCcc-----ccccccccccCCCCC-
Q 024315          174 GVICIACLISPYRKDRDACRSMLPEG--DFIEVFMDVPLQVCEARDPKGLYKLAREGKV-----KGFTGIDDPYEPPLN-  245 (269)
Q Consensus       174 g~~~iv~~~~~~~~~r~~ar~ll~~~--~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~-----~~~~~i~~~~e~p~~-  245 (269)
                      |..++.+.....+.+|+.++.++...  +|..+.+++|.+++..|.      ..|.+..     ..+..+-..++++.. 
T Consensus        76 G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl------~aR~~d~sDA~~~il~~q~~~~~~~~~~  149 (170)
T COG0645          76 GHSVVLDATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRL------AARKGDASDATFDILRVQLAEDEPWTEW  149 (170)
T ss_pred             CCcEEEecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHH------HHhCCCcccchHHHHHHHHhhhCCcccc
Confidence            99999998888888899888888765  677789999999999887      5555522     112222244555443 


Q ss_pred             CCeEEEcCCCcCHHHHH
Q 024315          246 CEVGVHVWYRFELAETW  262 (269)
Q Consensus       246 ~e~~id~~~~~~~~~~~  262 (269)
                      ....+++..+.++.+..
T Consensus       150 ~~~~~~~~~~~~~~~l~  166 (170)
T COG0645         150 ETADTDTARTRDVSQLA  166 (170)
T ss_pred             cchhhcccccccHHHHH
Confidence            23444554444444433

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.08  E-value=4.2e-11  Score=101.69  Aligned_cols=62  Identities=15%  Similarity=0.192  Sum_probs=55.5

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECC-eecC
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG-DNCR  142 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g-~~~~  142 (269)
                      .+++..+++|.+....||.+.+|++-+|+||||+||||+...|.++.+ |..|.++++| .+++
T Consensus         9 ~~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtr-p~~G~v~f~g~~dl~   71 (249)
T COG4674           9 DGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTR-PQEGEVLFDGDTDLT   71 (249)
T ss_pred             eceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCC-CCcceEEEcCchhhc
Confidence            567777889999999999999999999999999999999999999884 6689999999 5554

>PLN03130 ABC transporter C family member; Provisional

Probab=99.08  E-value=4.3e-10  Score=122.26  Aligned_cols=128  Identities=20%  Similarity=0.276  Sum_probs=82.8

Q ss_pred             ccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCc-cEEEECCeecC---------cccccCCCCChhhHHHHHH
Q 024315           92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGK-LTYILDGDNCR---------HGLNRDLSFKAEDRVENIR  161 (269)
Q Consensus        92 ~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~-g~i~l~g~~~~---------~~l~~~~g~~~~~~~~~~~  161 (269)
                      ..+.++.+++|++++|+|++|||||||+++|.|.+. +.+ |.|.+.+.-..         ..++.++.+......+.+.
T Consensus       633 L~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~-~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~  711 (1622)
T PLN03130        633 LSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELP-PRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYE  711 (1622)
T ss_pred             eeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhc-cCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHH
Confidence            466789999999999999999999999999999995 556 78776553110         0112222221110112222


Q ss_pred             HHHHHHH---HHH--hCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHH
Q 024315          162 RIGEVAK---LFA--DAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLY  222 (269)
Q Consensus       162 ~l~~~a~---~~~--~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~  222 (269)
                      .+.+.+.   .+.  ..|...    -...+++++++| ..||+++.++++  +++|+|++.+|....+.+.
T Consensus       712 ~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~I--lLLDEptSALD~~~~~~I~  780 (1622)
T PLN03130        712 RAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDV--YIFDDPLSALDAHVGRQVF  780 (1622)
T ss_pred             HHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCE--EEECCCccccCHHHHHHHH
Confidence            2222211   111  112222    233467888888 799999999999  8999999999988776654

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.08  E-value=5.1e-10  Score=96.39  Aligned_cols=131  Identities=19%  Similarity=0.210  Sum_probs=84.6

Q ss_pred             eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCccc-----------ccC--C----CCCh
Q 024315           91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----------NRD--L----SFKA  153 (269)
Q Consensus        91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l-----------~~~--~----g~~~  153 (269)
                      +....++++.+|+++.++|.||||||||+++|+|.+ .+.+|.|+++|.++.+.-           ..+  .    .++-
T Consensus        21 ~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l-~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lTi   99 (263)
T COG1101          21 ALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDL-KPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTI   99 (263)
T ss_pred             HHhcCceeecCCceEEEEcCCCccHHHHHHHhhCcc-ccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccccH
Confidence            446679999999999999999999999999999998 467999999999986310           000  0    0111


Q ss_pred             hhHH---------------HHHHHHHHHHHHHHhC--Cc----ceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChh
Q 024315          154 EDRV---------------ENIRRIGEVAKLFADA--GV----ICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQ  211 (269)
Q Consensus       154 ~~~~---------------~~~~~l~~~a~~~~~~--g~----~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~  211 (269)
                      +|..               .+.++.......+...  |+    ..-+...+++++|- ..+.+.+..+++  +++||=++
T Consensus       100 eENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pki--LLLDEHTA  177 (263)
T COG1101         100 EENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKI--LLLDEHTA  177 (263)
T ss_pred             HHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcE--EEecchhh
Confidence            1100               0000000111111111  11    11233445655554 688888999998  99999999


Q ss_pred             HHHhcChhhHHHH
Q 024315          212 VCEARDPKGLYKL  224 (269)
Q Consensus       212 ~l~~R~~k~l~~~  224 (269)
                      .++++..+-+.+.
T Consensus       178 ALDPkta~~vm~l  190 (263)
T COG1101         178 ALDPKTAEFVMEL  190 (263)
T ss_pred             cCCcchHHHHHHH
Confidence            9999987765533

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=99.08  E-value=2.6e-10  Score=105.12  Aligned_cols=117  Identities=18%  Similarity=0.193  Sum_probs=77.3

Q ss_pred             EEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--ccccCCCCChhh--------HHHHHHH------------HH
Q 024315          107 ITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--GLNRDLSFKAED--------RVENIRR------------IG  164 (269)
Q Consensus       107 l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--~l~~~~g~~~~~--------~~~~~~~------------l~  164 (269)
                      |+|+||||||||+++|+|.+ .+.+|.|.++|.++..  ..++.++|..++        ..+++..            ..
T Consensus         1 l~G~nGsGKSTLl~~iaGl~-~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~   79 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFE-QPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKP   79 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCCC-CCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHH
Confidence            58999999999999999988 4668999999987642  111222222221        1111110            01


Q ss_pred             HHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315          165 EVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       165 ~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      .+...+...++..    .....++++++| ..+++++.++++  +++|||+..++...++.+++.++
T Consensus        80 ~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~l--llLDEP~s~LD~~~~~~l~~~l~  144 (325)
T TIGR01187        80 RVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKI--LLLDEPLSALDKKLRDQMQLELK  144 (325)
T ss_pred             HHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCE--EEEeCCCccCCHHHHHHHHHHHH
Confidence            1223344444432    233456777777 699999999999  99999999999998888776554

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>PLN03232 ABC transporter C family member; Provisional

Probab=99.06  E-value=4.7e-10  Score=121.39  Aligned_cols=131  Identities=19%  Similarity=0.270  Sum_probs=81.3

Q ss_pred             eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCe-------ecC--cccccCCC----CChhhHH
Q 024315           91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD-------NCR--HGLNRDLS----FKAEDRV  157 (269)
Q Consensus        91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~-------~~~--~~l~~~~g----~~~~~~~  157 (269)
                      ..++.++++++|+.++|+|++|||||||+++|.|.+.+...+.+.+.+.       ++-  ..++.++.    +++++..
T Consensus       632 vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~  711 (1495)
T PLN03232        632 TLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYW  711 (1495)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHHHHH
Confidence            3566789999999999999999999999999999986432233333321       100  01111121    2222222


Q ss_pred             HHHHHHHHHHHHHH--hCCcce-e---eccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHH
Q 024315          158 ENIRRIGEVAKLFA--DAGVIC-I---ACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL  224 (269)
Q Consensus       158 ~~~~~l~~~a~~~~--~~g~~~-i---v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~  224 (269)
                      +.++.. .....+.  ..|... +   ...+++++++| ..||+++.++++  +++|+|++.+|....+.+.+.
T Consensus       712 ~vl~~~-~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~I--lLLDEptSaLD~~t~~~I~~~  782 (1495)
T PLN03232        712 RAIDVT-ALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDI--YIFDDPLSALDAHVAHQVFDS  782 (1495)
T ss_pred             HHHHHh-CCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCE--EEEcCCccccCHHHHHHHHHH
Confidence            222211 1111111  112222 2   23457888888 799999999999  899999999998887766543

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.05  E-value=4.8e-10  Score=120.51  Aligned_cols=137  Identities=16%  Similarity=0.130  Sum_probs=92.2

Q ss_pred             ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhc---cCCccEEEECCeecCc---ccccCCCCChhhH-----
Q 024315           88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH---WRGKLTYILDGDNCRH---GLNRDLSFKAEDR-----  156 (269)
Q Consensus        88 ~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~---~~~~g~i~l~g~~~~~---~l~~~~g~~~~~~-----  156 (269)
                      .....+++++.+++|++++|+|+||||||||++.|++++.   .+.+|.|.++|.++..   ..+..++|..|+.     
T Consensus        73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~  152 (1394)
T TIGR00956        73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPH  152 (1394)
T ss_pred             cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCC
Confidence            3556788999999999999999999999999999999863   3458999999986531   1222233332211     


Q ss_pred             ---HHHHH-------------------HHHHH-HHHHHhCCccee---------eccCChHHHHH-HHHHHhCCCCCccE
Q 024315          157 ---VENIR-------------------RIGEV-AKLFADAGVICI---------ACLISPYRKDR-DACRSMLPEGDFIE  203 (269)
Q Consensus       157 ---~~~~~-------------------~l~~~-a~~~~~~g~~~i---------v~~~~~~~~~r-~~ar~ll~~~~~~~  203 (269)
                         .+.+.                   ....+ ..++...|+...         +...++++++| .++++++.++++  
T Consensus       153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~v--  230 (1394)
T TIGR00956       153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKI--  230 (1394)
T ss_pred             CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCE--
Confidence               01100                   00011 123344454321         23356677777 699999999998  


Q ss_pred             EEEeCChhHHHhcChhhHHHHHh
Q 024315          204 VFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       204 i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      +++|||+..+|......+.+.++
T Consensus       231 lllDEPTsgLD~~~~~~i~~~L~  253 (1394)
T TIGR00956       231 QCWDNATRGLDSATALEFIRALK  253 (1394)
T ss_pred             EEEeCCCCCcCHHHHHHHHHHHH
Confidence            99999999999988877655444

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.04  E-value=1.7e-10  Score=102.76  Aligned_cols=121  Identities=21%  Similarity=0.281  Sum_probs=80.7

Q ss_pred             cceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc---cc-----ccCCCCChhhHH--------H
Q 024315           95 QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH---GL-----NRDLSFKAEDRV--------E  158 (269)
Q Consensus        95 ~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~---~l-----~~~~g~~~~~~~--------~  158 (269)
                      +++.....-+.+|-|+||||||||.++++|++. |..|.|.++|+.+..   ++     .+.+||..|+-+        .
T Consensus        17 a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~r-PdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg   95 (352)
T COG4148          17 ANFTLPARGITALFGPSGSGKTSLINMIAGLTR-PDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG   95 (352)
T ss_pred             EeccCCCCceEEEecCCCCChhhHHHHHhccCC-ccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence            455666657999999999999999999999884 679999999987652   11     234555555431        1


Q ss_pred             HHHH------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcCh
Q 024315          159 NIRR------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDP  218 (269)
Q Consensus       159 ~~~~------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~  218 (269)
                      ++++      ..+...+..-.|+..    ....++++++|| .+.|+++.+|++  ++||||++.++..-.
T Consensus        96 NL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~L--LLmDEPLaSLD~~RK  164 (352)
T COG4148          96 NLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPEL--LLMDEPLASLDLPRK  164 (352)
T ss_pred             chhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCe--eeecCchhhcccchh
Confidence            1100      011111222223221    233457778888 689999999999  999999999986443

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.03  E-value=5.5e-10  Score=121.03  Aligned_cols=132  Identities=18%  Similarity=0.252  Sum_probs=85.8

Q ss_pred             eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec--Cc-------ccccCCCCChhhHHHHHH
Q 024315           91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC--RH-------GLNRDLSFKAEDRVENIR  161 (269)
Q Consensus        91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~--~~-------~l~~~~g~~~~~~~~~~~  161 (269)
                      ..++.++.+++|++++|+|+||||||||+++|.|.++ +.+|.+.++|.--  ..       .++.++.+......+.+.
T Consensus       653 ~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~-~~~G~i~~~g~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~  731 (1522)
T TIGR00957       653 TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD-KVEGHVHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQ  731 (1522)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc-cCCcEEEECCEEEEEcCCccccCCcHHHHhhcCCccCHHHHH
Confidence            4567799999999999999999999999999999884 6688999887311  00       011111111000011122


Q ss_pred             HHHHHH---HHHH--hCCcc----eeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHH
Q 024315          162 RIGEVA---KLFA--DAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (269)
Q Consensus       162 ~l~~~a---~~~~--~~g~~----~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~  225 (269)
                      .+.+..   ..+.  ..|..    ......++++++| ..+|+++.++++  +++|+|+..+|....+.+.+..
T Consensus       732 ~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~i--llLDEp~saLD~~~~~~i~~~l  803 (1522)
T TIGR00957       732 QVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADI--YLFDDPLSAVDAHVGKHIFEHV  803 (1522)
T ss_pred             HHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCE--EEEcCCccccCHHHHHHHHHHH
Confidence            211111   1111  11221    1233457777777 699999999999  9999999999998888776554

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.03  E-value=2.6e-09  Score=99.48  Aligned_cols=137  Identities=18%  Similarity=0.240  Sum_probs=94.0

Q ss_pred             CceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCC----ccEEEECCeecCc-------cccc-CCCCChh
Q 024315           87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG----KLTYILDGDNCRH-------GLNR-DLSFKAE  154 (269)
Q Consensus        87 ~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~----~g~i~l~g~~~~~-------~l~~-~~g~~~~  154 (269)
                      +.+.+.+++||.+.+||+++|+|.||||||-.+..++++|+.++    +|.|.++|.++..       .++. ++++..|
T Consensus        21 ~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQ  100 (534)
T COG4172          21 GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQ  100 (534)
T ss_pred             cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEec
Confidence            36778899999999999999999999999999999999997532    6899999998753       1111 1222222


Q ss_pred             hH--------------HHHHHH---H------HHHHHHHHhCCcce-------eeccCChHHHHHH-HHHHhCCCCCccE
Q 024315          155 DR--------------VENIRR---I------GEVAKLFADAGVIC-------IACLISPYRKDRD-ACRSMLPEGDFIE  203 (269)
Q Consensus       155 ~~--------------~~~~~~---l------~~~a~~~~~~g~~~-------iv~~~~~~~~~r~-~ar~ll~~~~~~~  203 (269)
                      +-              .+.++.   +      .+...++...|+..       +.-.+++++++|- ++.+++.+|++  
T Consensus       101 EPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~l--  178 (534)
T COG4172         101 EPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDL--  178 (534)
T ss_pred             ccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCe--
Confidence            11              111110   0      11223344444422       3334577788885 88999999999  


Q ss_pred             EEEeCChhHHHhcChhhHHHHH
Q 024315          204 VFMDVPLQVCEARDPKGLYKLA  225 (269)
Q Consensus       204 i~ld~p~~~l~~R~~k~l~~~~  225 (269)
                      +.-|+|+-.++--....+.+.+
T Consensus       179 LIADEPTTALDVtvQaQIL~Ll  200 (534)
T COG4172         179 LIADEPTTALDVTVQAQILDLL  200 (534)
T ss_pred             EeecCCcchhhhhhHHHHHHHH
Confidence            8999999999887776644443

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=98.99  E-value=1.4e-09  Score=106.06  Aligned_cols=141  Identities=19%  Similarity=0.167  Sum_probs=86.5

Q ss_pred             ceEEeeCc-eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCccc-c---cCCCCChhh
Q 024315           81 NILWHKNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-N---RDLSFKAED  155 (269)
Q Consensus        81 ~~~~~~~~-v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l-~---~~~g~~~~~  155 (269)
                      ++.+.+.. ....++.++.+++|+.|+|+||||+|||||++.|++.+. +.+|.|.+... +.-+. .   ..+. ....
T Consensus       326 ~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~-~~~G~v~~g~~-v~igyf~Q~~~~l~-~~~t  402 (530)
T COG0488         326 NVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG-PLSGTVKVGET-VKIGYFDQHRDELD-PDKT  402 (530)
T ss_pred             ccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc-cCCceEEeCCc-eEEEEEEehhhhcC-ccCc
Confidence            44444422 344567899999999999999999999999999999885 44777776543 22100 0   0000 1111


Q ss_pred             HHHHHHHH------HHHHHHHHhCCcc-----eeeccCChHHHHHH-HHHHhCCCCCccEEEEeCChhHHHhcChhhHHH
Q 024315          156 RVENIRRI------GEVAKLFADAGVI-----CIACLISPYRKDRD-ACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK  223 (269)
Q Consensus       156 ~~~~~~~l------~~~a~~~~~~g~~-----~iv~~~~~~~~~r~-~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~  223 (269)
                      ..++++..      ..+-..+..++..     .-+..+|++++.|- .++-++..+++  +.+|||++.++--....+.+
T Consensus       403 ~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNv--LiLDEPTNhLDi~s~~aLe~  480 (530)
T COG0488         403 VLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNL--LLLDEPTNHLDIESLEALEE  480 (530)
T ss_pred             HHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCE--EEEcCCCccCCHHHHHHHHH
Confidence            11111111      1122233333432     23445677777774 66666777888  89999999999877666665


Q ss_pred             HHh
Q 024315          224 LAR  226 (269)
Q Consensus       224 ~~r  226 (269)
                      .+.
T Consensus       481 aL~  483 (530)
T COG0488         481 ALL  483 (530)
T ss_pred             HHH
Confidence            555

>PLN03140 ABC transporter G family member; Provisional

Probab=98.98  E-value=1.1e-09  Score=118.01  Aligned_cols=136  Identities=15%  Similarity=0.091  Sum_probs=91.5

Q ss_pred             ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCC---ccEEEECCeecCcc-cccCCCCChhhH-------
Q 024315           88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG---KLTYILDGDNCRHG-LNRDLSFKAEDR-------  156 (269)
Q Consensus        88 ~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~---~g~i~l~g~~~~~~-l~~~~g~~~~~~-------  156 (269)
                      .....+++++.+++|++++|+||||||||||+++|++++. +.   +|.|.++|.++... .++.++|..|+.       
T Consensus       177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~-~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lT  255 (1470)
T PLN03140        177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLD-PSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMT  255 (1470)
T ss_pred             cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC-CCCcceeEEEECCEechhhcccceeEEecccccCCCcCc
Confidence            4567888999999999999999999999999999999984 44   79999999876321 112222222210       


Q ss_pred             -HHHHHH---H---------------H----------------------------HHHHHHHhCCcce---------eec
Q 024315          157 -VENIRR---I---------------G----------------------------EVAKLFADAGVIC---------IAC  180 (269)
Q Consensus       157 -~~~~~~---l---------------~----------------------------~~a~~~~~~g~~~---------iv~  180 (269)
                       .+.+..   +               .                            ....++...|+..         .+.
T Consensus       256 V~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~r  335 (1470)
T PLN03140        256 VKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIR  335 (1470)
T ss_pred             HHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcccc
Confidence             010000   0               0                            0112333344422         123


Q ss_pred             cCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315          181 LISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       181 ~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      ..++++++| ..+++++.++++  +++|||+..+|......+.+.++
T Consensus       336 glSGGerkRVsia~aL~~~p~v--lllDEPTsGLDs~t~~~i~~~Lr  380 (1470)
T PLN03140        336 GISGGQKKRVTTGEMIVGPTKT--LFMDEISTGLDSSTTYQIVKCLQ  380 (1470)
T ss_pred             CCCcccceeeeehhhhcCCCcE--EEEeCCCcCccHHHHHHHHHHHH
Confidence            456677777 588999999988  99999999999988887665554

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=98.96  E-value=1.5e-09  Score=117.38  Aligned_cols=131  Identities=15%  Similarity=0.162  Sum_probs=85.2

Q ss_pred             eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC--c--cc-----ccCCCCChhhHHHHHH
Q 024315           91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR--H--GL-----NRDLSFKAEDRVENIR  161 (269)
Q Consensus        91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~--~--~l-----~~~~g~~~~~~~~~~~  161 (269)
                      ..+++++.+++|++++|+||||||||||+++|+|.++ +.+|.|.++|.-..  .  .+     +.++.+......+.+.
T Consensus       441 ~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~-~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~  519 (1490)
T TIGR01271       441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE-PSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYT  519 (1490)
T ss_pred             ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHHHH
Confidence            5678899999999999999999999999999999884 66899999874110  0  11     1111111000001111


Q ss_pred             HHHHH---HHHHHh--CCcc----eeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHH
Q 024315          162 RIGEV---AKLFAD--AGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL  224 (269)
Q Consensus       162 ~l~~~---a~~~~~--~g~~----~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~  224 (269)
                      .+...   ...+..  .|..    .-...+++++++| ..+|+++.++++  +++|+|+..+|....+.+++.
T Consensus       520 ~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~i--llLDep~saLD~~~~~~i~~~  590 (1490)
T TIGR01271       520 SVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADL--YLLDSPFTHLDVVTEKEIFES  590 (1490)
T ss_pred             HHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCE--EEEeCCcccCCHHHHHHHHHH
Confidence            11111   111111  1111    1133457777777 699999999999  999999999999988887753

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.93  E-value=8.5e-09  Score=90.27  Aligned_cols=34  Identities=32%  Similarity=0.391  Sum_probs=30.4

Q ss_pred             eCceeeccCcceecCCCeEEEEEcCCCChHHHHH
Q 024315           86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLA  119 (269)
Q Consensus        86 ~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla  119 (269)
                      +..+.+.+.+||.+++|++++|+|+||||||||+
T Consensus         5 ~~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~   38 (226)
T cd03270           5 GAREHNLKNVDVDIPRNKLVVITGVSGSGKSSLA   38 (226)
T ss_pred             cchhhccccceeecCCCcEEEEEcCCCCCHHHHH
Confidence            3456678889999999999999999999999996

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.92  E-value=1.4e-08  Score=107.39  Aligned_cols=145  Identities=19%  Similarity=0.197  Sum_probs=100.6

Q ss_pred             cceEEeeCceeec-------cCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccC
Q 024315           80 TNILWHKNSVDKR-------DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRD  148 (269)
Q Consensus        80 ~~~~~~~~~v~~~-------~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~  148 (269)
                      +.+++++..++|-       +++++++++||.|+|+|..|||||||+.+|-|+. ++.+|.|.+||.|+.+    .||+.
T Consensus      1137 G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~-e~~~G~I~IDgvdI~~igL~dLRsr 1215 (1381)
T KOG0054|consen 1137 GEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLV-EPAEGEILIDGVDISKIGLHDLRSR 1215 (1381)
T ss_pred             CeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhc-CccCCeEEEcCeecccccHHHHHhc
Confidence            4566666666654       5568999999999999999999999999999987 5678999999999874    45544


Q ss_pred             CCCChh----------------------hHHHHHHHHHHHHHHHH-hCCcceee----ccCChHHHHH-HHHHHhCCCCC
Q 024315          149 LSFKAE----------------------DRVENIRRIGEVAKLFA-DAGVICIA----CLISPYRKDR-DACRSMLPEGD  200 (269)
Q Consensus       149 ~g~~~~----------------------~~~~~~~~l~~~a~~~~-~~g~~~iv----~~~~~~~~~r-~~ar~ll~~~~  200 (269)
                      +++-+|                      +..+.+.+..-...+-. ..++...+    ...+.+++|. -.+|+++.+.+
T Consensus      1216 lsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~sk 1295 (1381)
T KOG0054|consen 1216 LSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSK 1295 (1381)
T ss_pred             CeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCC
Confidence            443333                      33333332211111111 12333322    2235555555 58999999999


Q ss_pred             ccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          201 FIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       201 ~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      +  +.+||.++..|.....-+.+.+|+
T Consensus      1296 I--LvLDEATAsVD~~TD~lIQ~tIR~ 1320 (1381)
T KOG0054|consen 1296 I--LVLDEATASVDPETDALIQKTIRE 1320 (1381)
T ss_pred             E--EEEecccccCChHHHHHHHHHHHH
Confidence            9  899999999998887777777764

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=98.91  E-value=6e-10  Score=101.78  Aligned_cols=52  Identities=12%  Similarity=0.118  Sum_probs=48.3

Q ss_pred             CCCcccCCCcceeeeeeccccc--Cccccccccceeeccccccccccchhhhccccccccccccc
Q 024315           12 TRPAICSPSLAEVDFRTSVKMS--GFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQNS   74 (269)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~f~~idr~~~~~~~~~~~~~~~~~gagmi~~~   74 (269)
                      ...+|.+||||+|.|++..|+.  +|.+|+.||+||+|||++|.           |+|||||...
T Consensus       362 ~a~~l~lN~Ig~v~i~~~~pi~fd~Y~~N~atG~FIlID~~tn~-----------TVgaGmI~~~  415 (431)
T COG2895         362 GAESLPLNEIGRVRISFDKPIAFDAYAENRATGSFILIDRLTNG-----------TVGAGMILAS  415 (431)
T ss_pred             cccccCCCcceEEEEecCCceeecccccCcccccEEEEEcCCCC-----------ceeceeeech
Confidence            3467999999999999999999  99999999999999999997           9999999763

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=98.90  E-value=1.5e-09  Score=93.20  Aligned_cols=130  Identities=18%  Similarity=0.205  Sum_probs=76.8

Q ss_pred             ccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccC--------CccEEEECCeecCc-ccccCCCCChhhHHHH---
Q 024315           92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR--------GKLTYILDGDNCRH-GLNRDLSFKAEDRVEN---  159 (269)
Q Consensus        92 ~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~--------~~g~i~l~g~~~~~-~l~~~~g~~~~~~~~~---  159 (269)
                      .++.++.+.+| +++|+|+||||||||+++|.+.+++.        ..+.+.+.+.+... .....+++..|+....   
T Consensus        13 ~~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~   91 (197)
T cd03278          13 ADKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSI   91 (197)
T ss_pred             CCCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeE
Confidence            46778889999 99999999999999999999887432        01234444544321 1112223333321100   


Q ss_pred             --HHHHHHHHHHHHhCCc-ceeeccCChHHHHH-HHHHHhC----CCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          160 --IRRIGEVAKLFADAGV-ICIACLISPYRKDR-DACRSML----PEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       160 --~~~l~~~a~~~~~~g~-~~iv~~~~~~~~~r-~~ar~ll----~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                        ..++.+....   .+. ...+...++++++| ..++.++    ..+++  +++|||+..++......+.+.+++
T Consensus        92 ~~~~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~i--lllDEP~~~LD~~~~~~l~~~l~~  162 (197)
T cd03278          92 ISQGDVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPF--CVLDEVDAALDDANVERFARLLKE  162 (197)
T ss_pred             EehhhHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCE--EEEeCCcccCCHHHHHHHHHHHHH
Confidence              1111222211   221 12233456666666 5666654    44567  899999999999888877666553

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>PTZ00243 ABC transporter; Provisional

Probab=98.88  E-value=4.9e-09  Score=113.85  Aligned_cols=132  Identities=17%  Similarity=0.177  Sum_probs=83.0

Q ss_pred             ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC---c--cc-----ccCCCCChhhHH
Q 024315           88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR---H--GL-----NRDLSFKAEDRV  157 (269)
Q Consensus        88 ~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~---~--~l-----~~~~g~~~~~~~  157 (269)
                      +....+++++.+++|++++|+|+||||||||++.|+|.+. +.+|.+.+++. +.   .  .+     +.++.+......
T Consensus       672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~-~~~G~i~~~~~-i~yv~Q~~~l~~~Tv~enI~~~~~~~~  749 (1560)
T PTZ00243        672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE-ISEGRVWAERS-IAYVPQQAWIMNATVRGNILFFDEEDA  749 (1560)
T ss_pred             CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC-CCCcEEEECCe-EEEEeCCCccCCCcHHHHHHcCChhhH
Confidence            3446778899999999999999999999999999999884 56788876532 11   0  01     001111100001


Q ss_pred             HHHHHHHH---HHHHHHhC--Cc----ceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHH
Q 024315          158 ENIRRIGE---VAKLFADA--GV----ICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK  223 (269)
Q Consensus       158 ~~~~~l~~---~a~~~~~~--g~----~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~  223 (269)
                      +.+....+   ....+...  |.    ......+++++++| ..+|+++.++++  +++|+|+..+|....+.+.+
T Consensus       750 ~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~i--llLDEP~saLD~~~~~~i~~  823 (1560)
T PTZ00243        750 ARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDV--YLLDDPLSALDAHVGERVVE  823 (1560)
T ss_pred             HHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCE--EEEcCccccCCHHHHHHHHH
Confidence            11111111   11111111  22    12234467777777 699999999999  99999999999877666543

>PRK00131 aroK shikimate kinase; Reviewed

Probab=98.88  E-value=1.8e-09  Score=89.50  Aligned_cols=154  Identities=19%  Similarity=0.157  Sum_probs=78.8

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHH------HHHHHHHHH-HHHHHh
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRV------ENIRRIGEV-AKLFAD  172 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~------~~~~~l~~~-a~~~~~  172 (269)
                      .++..++|+|++||||||+++.|+..+..     .+++.+.+....   .+.+..+..      .......+. ..+...
T Consensus         2 ~~~~~i~l~G~~GsGKstla~~La~~l~~-----~~~d~d~~~~~~---~g~~~~~~~~~~g~~~~~~~~~~~~~~l~~~   73 (175)
T PRK00131          2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGY-----DFIDTDHLIEAR---AGKSIPEIFEEEGEAAFRELEEEVLAELLAR   73 (175)
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHHHhCC-----CEEEChHHHHHH---cCCCHHHHHHHHCHHHHHHHHHHHHHHHHhc
Confidence            46789999999999999999999998843     367777654321   122221111      111111121 122222


Q ss_pred             CCcceeeccCC--hHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHH-Hh-cCccccccccccccCC-C-CCC
Q 024315          173 AGVICIACLIS--PYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL-AR-EGKVKGFTGIDDPYEP-P-LNC  246 (269)
Q Consensus       173 ~g~~~iv~~~~--~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~-~r-~g~~~~~~~i~~~~e~-p-~~~  246 (269)
                      .+. ++....+  .....+..++   .  ....+|+++|.+.+.+|..++..+. .. ......+..+.....+ . ..+
T Consensus        74 ~~~-vi~~g~~~~~~~~~r~~l~---~--~~~~v~l~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (175)
T PRK00131         74 HNL-VISTGGGAVLREENRALLR---E--RGTVVYLDASFEELLRRLRRDRNRPLLQTNDPKEKLRDLYEERDPLYEEVA  147 (175)
T ss_pred             CCC-EEEeCCCEeecHHHHHHHH---h--CCEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHHHHHHhhc
Confidence            232 2222111  1223333332   2  2345899999999988875432100 00 0000001111111111 1 126


Q ss_pred             CeEEEcCCCcCHHHHHH-HHhhc
Q 024315          247 EVGVHVWYRFELAETWR-ITKWL  268 (269)
Q Consensus       247 e~~id~~~~~~~~~~~~-i~~~~  268 (269)
                      +++|||+ ..+++++.. |.+++
T Consensus       148 dl~idt~-~~~~~e~~~~I~~~v  169 (175)
T PRK00131        148 DITVETD-GRSPEEVVNEILEKL  169 (175)
T ss_pred             CeEEeCC-CCCHHHHHHHHHHHH
Confidence            8999995 788998888 66554

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=98.87  E-value=3.8e-09  Score=84.87  Aligned_cols=112  Identities=21%  Similarity=0.250  Sum_probs=72.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCC----CChhhHHHHHHHHHHHHHHHHhCCcceee
Q 024315          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLS----FKAEDRVENIRRIGEVAKLFADAGVICIA  179 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g----~~~~~~~~~~~~l~~~a~~~~~~g~~~iv  179 (269)
                      ++.++|++||||||+++.|.+.+.     ...++.|.++..+.....    ...+........+..........|...++
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~~-----~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~vv   75 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRLG-----AVVISQDEIRRRLAGEDPPSPSDYIEAEERAYQILNAAIRKALRNGNSVVV   75 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHST-----EEEEEHHHHHHHHCCSSSGCCCCCHHHHHHHHHHHHHHHHHHHHTT-EEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCC-----CEEEeHHHHHHHHcccccccchhHHHHHHHHHHHHHHHHHHHHHcCCCcee
Confidence            578999999999999999998764     567888887654433211    11222222233333444445567777777


Q ss_pred             ccCChHHHHHHHHHHhCCCC--CccEEEEeCChhHHHhcChhh
Q 024315          180 CLISPYRKDRDACRSMLPEG--DFIEVFMDVPLQVCEARDPKG  220 (269)
Q Consensus       180 ~~~~~~~~~r~~ar~ll~~~--~~~~i~ld~p~~~l~~R~~k~  220 (269)
                      +........++.+.+++...  ++..|++++|.+.+.+|..++
T Consensus        76 d~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R  118 (143)
T PF13671_consen   76 DNTNLSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQR  118 (143)
T ss_dssp             ESS--SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTT
T ss_pred             ccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhc
Confidence            76666667777776666533  455589999999999887443

...

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=98.87  E-value=1.1e-08  Score=100.30  Aligned_cols=132  Identities=23%  Similarity=0.331  Sum_probs=87.4

Q ss_pred             eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee-cCc----------ccccCC-------CCC
Q 024315           91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN-CRH----------GLNRDL-------SFK  152 (269)
Q Consensus        91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~-~~~----------~l~~~~-------g~~  152 (269)
                      ..+..++.+++|+-+.|.|+||||||||.|+|+|+-+ -++|.|..-.+. +..          .|+..+       .++
T Consensus       408 ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP-~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~  486 (604)
T COG4178         408 LLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWP-WGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFS  486 (604)
T ss_pred             eeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCc-cCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCC
Confidence            3455689999999999999999999999999999874 456766655332 110          111111       134


Q ss_pred             hhhHHHHHHHH--HHHHHHHHhCCcceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          153 AEDRVENIRRI--GEVAKLFADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       153 ~~~~~~~~~~l--~~~a~~~~~~g~~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      +++..+.+..+  ++.+..+.+..-  =-..++++++|| ..||-++.+|++  +++||.++.+++....++|+.+++
T Consensus       487 d~~l~~vL~~vgL~~L~~rl~~~~~--W~~vLS~GEqQRlafARilL~kP~~--v~LDEATsALDe~~e~~l~q~l~~  560 (604)
T COG4178         487 DAELVAVLHKVGLGDLAERLDEEDR--WDRVLSGGEQQRLAFARLLLHKPKW--VFLDEATSALDEETEDRLYQLLKE  560 (604)
T ss_pred             hHHHHHHHHHcCcHHHHHHHhccCc--HhhhcChhHHHHHHHHHHHHcCCCE--EEEecchhccChHHHHHHHHHHHh
Confidence            44443333221  122222221111  011246677777 688999999999  999999999999999999988775

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.86  E-value=1.5e-09  Score=112.72  Aligned_cols=128  Identities=18%  Similarity=0.210  Sum_probs=85.9

Q ss_pred             cCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCC--ccEEEECCeecC-cccccCCCCChhhH-------------
Q 024315           93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG--KLTYILDGDNCR-HGLNRDLSFKAEDR-------------  156 (269)
Q Consensus        93 ~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~--~g~i~l~g~~~~-~~l~~~~g~~~~~~-------------  156 (269)
                      .+++=.+.||.+.+|+|+||||||||++.|+++. ..|  .|.|+++|.+.. ...++..||..|..             
T Consensus       808 ~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~-t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~  886 (1391)
T KOG0065|consen  808 NNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRK-TGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLR  886 (1391)
T ss_pred             hcCceEecCCceeehhcCCCCchHHHHHHHhcCc-ccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHH
Confidence            4556778999999999999999999999999987 344  789999999887 44555556555421             


Q ss_pred             -------------HHHHHHHHHHHHHHHhCCcce-eecc----CChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcC
Q 024315          157 -------------VENIRRIGEVAKLFADAGVIC-IACL----ISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD  217 (269)
Q Consensus       157 -------------~~~~~~l~~~a~~~~~~g~~~-iv~~----~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~  217 (269)
                                   .+..+.+.++..++.-..+.+ ++..    ++..++.| -++-+++.+|+.+ ++||||+..||.|.
T Consensus       887 fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~i-lFLDEPTSGLDsqa  965 (1391)
T KOG0065|consen  887 FSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSI-LFLDEPTSGLDSQA  965 (1391)
T ss_pred             HHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCcee-EEecCCCCCccHHH
Confidence                         123344444444432221111 2211    34433333 3677888888443 89999999999998


Q ss_pred             hhhHH
Q 024315          218 PKGLY  222 (269)
Q Consensus       218 ~k~l~  222 (269)
                      ..-+.
T Consensus       966 A~~i~  970 (1391)
T KOG0065|consen  966 AAIVM  970 (1391)
T ss_pred             HHHHH
Confidence            76533

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=98.83  E-value=9e-08  Score=80.27  Aligned_cols=26  Identities=38%  Similarity=0.549  Sum_probs=23.8

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          102 GCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       102 g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      |++++|+|+|||||||+++.|+..+.
T Consensus         1 ~~~~~i~G~sGsGKttl~~~l~~~~~   26 (179)
T TIGR02322         1 GRLIYVVGPSGAGKDTLLDYARARLA   26 (179)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            56899999999999999999999875

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]

Probab=98.82  E-value=1.1e-08  Score=105.81  Aligned_cols=139  Identities=14%  Similarity=0.185  Sum_probs=97.7

Q ss_pred             ceEEeeCcee-eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-----cccCCCCChh
Q 024315           81 NILWHKNSVD-KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAE  154 (269)
Q Consensus        81 ~~~~~~~~v~-~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-----l~~~~g~~~~  154 (269)
                      ++...++... +..+.++.+++||+.++.|+|||||||+.+.|.|.. .+.+|.+++.|.++...     .++.+||.+|
T Consensus       569 ~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~-~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ  647 (885)
T KOG0059|consen  569 NLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGET-KPTSGEALIKGHDITVSTDFQQVRKQLGYCPQ  647 (885)
T ss_pred             ceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCc-cCCcceEEEecCccccccchhhhhhhcccCCc
Confidence            4444444444 778899999999999999999999999999999987 57789999999887642     4566898888


Q ss_pred             hHH-----------HHHHHHH--------H-HHHHHHhCCcce-----eeccCChHHHHHHHHHHhCCCCCccEEEEeCC
Q 024315          155 DRV-----------ENIRRIG--------E-VAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFMDVP  209 (269)
Q Consensus       155 ~~~-----------~~~~~l~--------~-~a~~~~~~g~~~-----iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p  209 (269)
                      ...           +.+.++.        + +..++...++..     +...+.+.++....+.+++.++++  |++|+|
T Consensus       648 ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~v--i~LDEP  725 (885)
T KOG0059|consen  648 FDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSV--ILLDEP  725 (885)
T ss_pred             hhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCE--EEecCC
Confidence            532           2222221        1 122222333322     233334444455788999999999  999999


Q ss_pred             hhHHHhcChhhHH
Q 024315          210 LQVCEARDPKGLY  222 (269)
Q Consensus       210 ~~~l~~R~~k~l~  222 (269)
                      ....|+..++.+.
T Consensus       726 stGmDP~arr~lW  738 (885)
T KOG0059|consen  726 STGLDPKARRHLW  738 (885)
T ss_pred             CCCCCHHHHHHHH
Confidence            9999987766644

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=98.80  E-value=6.3e-08  Score=82.07  Aligned_cols=149  Identities=16%  Similarity=0.196  Sum_probs=78.4

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc----cccCCCCChhhHHHHHHHHHH------------
Q 024315          102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDLSFKAEDRVENIRRIGE------------  165 (269)
Q Consensus       102 g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~----l~~~~g~~~~~~~~~~~~l~~------------  165 (269)
                      |++++|+||||||||||++.|++.+..    .+.+.+..+...    ......+..++..+.+..-..            
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg   77 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQREQT----QLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFALSWHANGLYYG   77 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCC----eEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccC
Confidence            689999999999999999999987642    355555544321    112344555554433211100            


Q ss_pred             ---HHHHHHhCCcceeeccCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCcc-cccc-cc-ccc
Q 024315          166 ---VAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKV-KGFT-GI-DDP  239 (269)
Q Consensus       166 ---~a~~~~~~g~~~iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~-~~~~-~i-~~~  239 (269)
                         ........+..++..   +........+..+.. .+..+++++|.+.+.+|..++      .+.. +.+. .+ ...
T Consensus        78 ~~~~~~~~l~~g~~VI~~---G~~~~~~~~~~~~~~-~~~vi~l~~s~e~l~~RL~~R------~~~~~~~i~~rl~r~~  147 (186)
T PRK10078         78 VGIEIDLWLHAGFDVLVN---GSRAHLPQARARYQS-ALLPVCLQVSPEILRQRLENR------GRENASEINARLARAA  147 (186)
T ss_pred             CcHHHHHHHhCCCEEEEe---ChHHHHHHHHHHcCC-CEEEEEEeCCHHHHHHHHHHh------CCCCHHHHHHHHHHhh
Confidence               001111234434432   223333344444433 344489999999999888432      1111 0010 00 111


Q ss_pred             cCCCCCCC-eEEEcCCCcCHHHHHH-HHhhc
Q 024315          240 YEPPLNCE-VGVHVWYRFELAETWR-ITKWL  268 (269)
Q Consensus       240 ~e~p~~~e-~~id~~~~~~~~~~~~-i~~~~  268 (269)
                      ++..  .+ ++|++  ..+++++.. |.++|
T Consensus       148 ~~~~--ad~~vi~~--~~s~ee~~~~i~~~l  174 (186)
T PRK10078        148 RYQP--QDCHTLNN--DGSLRQSVDTLLTLL  174 (186)
T ss_pred             hhcc--CCEEEEeC--CCCHHHHHHHHHHHH
Confidence            2222  34 67775  346777776 77665

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.80  E-value=3.4e-08  Score=84.69  Aligned_cols=143  Identities=22%  Similarity=0.215  Sum_probs=84.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccc-cCCCCChhhHHHHHHHHHHHHHHHHhCCcceeeccC
Q 024315          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN-RDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLI  182 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~-~~~g~~~~~~~~~~~~l~~~a~~~~~~g~~~iv~~~  182 (269)
                      ++.++|++||||||+++.|++.|...+..++.+..|-.+--+. ..++.-.+..++....-........-.+..++++..
T Consensus         3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~ke~yres~~ks~~rlldSalkn~~VIvDdt   82 (261)
T COG4088           3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPILKEVYRESFLKSVERLLDSALKNYLVIVDDT   82 (261)
T ss_pred             eEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecccccchHHHHHHHHHHHHHHHHHHHHhcceEEEEecc
Confidence            5789999999999999999999976655666665543331110 112222233332221111111111112557888888


Q ss_pred             ChHHHHHHHHHHhCCC--CCccEEEEeCChhHHHhcChhhHHHHHhcCcccc--ccccccccCCCC------CCCeEEEc
Q 024315          183 SPYRKDRDACRSMLPE--GDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKG--FTGIDDPYEPPL------NCEVGVHV  252 (269)
Q Consensus       183 ~~~~~~r~~ar~ll~~--~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~--~~~i~~~~e~p~------~~e~~id~  252 (269)
                      ..++..|.++...+.+  ..+..|++.+|++.|..|+.      .+.-.|++  +..+.+.||+|.      +|-++||+
T Consensus        83 NYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~------ergepip~Evl~qly~RfEePn~~~rWDspll~id~  156 (261)
T COG4088          83 NYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNR------ERGEPIPEEVLRQLYDRFEEPNPDRRWDSPLLVIDD  156 (261)
T ss_pred             cHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhc------cCCCCCCHHHHHHHHHhhcCCCCCccccCceEEEec
Confidence            7776666443333332  35566999999999998883      33333433  345556777765      46689995

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=98.80  E-value=3.4e-08  Score=88.84  Aligned_cols=152  Identities=20%  Similarity=0.278  Sum_probs=77.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHH-HHHHH-HHHHHHHhCCcceeecc
Q 024315          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVEN-IRRIG-EVAKLFADAGVICIACL  181 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~-~~~l~-~~a~~~~~~g~~~iv~~  181 (269)
                      ++.|+|.+||||||+++.|...+...+...+.++.+.+.  +.... |......+. ...+. .+...+ ....++|++.
T Consensus         3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~--~~~~~-y~~~~~Ek~~R~~l~s~v~r~l-s~~~iVI~Dd   78 (270)
T PF08433_consen    3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG--IDRND-YADSKKEKEARGSLKSAVERAL-SKDTIVILDD   78 (270)
T ss_dssp             EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH---TTSS-S--GGGHHHHHHHHHHHHHHHH-TT-SEEEE-S
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc--cchhh-hhchhhhHHHHHHHHHHHHHhh-ccCeEEEEeC
Confidence            688999999999999999999987766667788766654  21221 432222222 22222 233333 3456777777


Q ss_pred             CChHHHHHHHHHHhCCC--CCccEEEEeCChhHHHhcChhhHHHHHhcCccc--cccccccccCCCCC------CCeEEE
Q 024315          182 ISPYRKDRDACRSMLPE--GDFIEVFMDVPLQVCEARDPKGLYKLAREGKVK--GFTGIDDPYEPPLN------CEVGVH  251 (269)
Q Consensus       182 ~~~~~~~r~~ar~ll~~--~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~--~~~~i~~~~e~p~~------~e~~id  251 (269)
                      ....+-.|-.+..+...  ..+..|++++|++.|..|+.++-.    ...+.  .+..+...||+|+.      |-++|+
T Consensus        79 ~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~----~~~~~~e~i~~m~~RfE~P~~~nrWD~plf~i~  154 (270)
T PF08433_consen   79 NNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPE----PERYPEETIDDMIQRFEEPDPKNRWDSPLFTID  154 (270)
T ss_dssp             ---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-----S--S-HHHHHHHHHH---TTSS-GGGS-SEEEE
T ss_pred             CchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCC----CCCCCHHHHHHHHHHhcCCCCCCCccCCeEEEe
Confidence            76556555433333332  356679999999999999854431    10121  13444466888774      568999


Q ss_pred             -cCCCcCHHHHHH
Q 024315          252 -VWYRFELAETWR  263 (269)
Q Consensus       252 -~~~~~~~~~~~~  263 (269)
                       .+...+.++++.
T Consensus       155 ~~~~~~~~~~I~~  167 (270)
T PF08433_consen  155 SSDEELPLEEIWN  167 (270)
T ss_dssp             -TTS---HHHHHH
T ss_pred             cCCCCCCHHHHHH
Confidence             455666666665

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=98.80  E-value=2.5e-08  Score=90.41  Aligned_cols=114  Identities=23%  Similarity=0.249  Sum_probs=71.1

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccC-----CCCChhhHHHHHHHHHHHHHHHHhCCcce
Q 024315          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD-----LSFKAEDRVENIRRIGEVAKLFADAGVIC  177 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~-----~g~~~~~~~~~~~~l~~~a~~~~~~g~~~  177 (269)
                      .++.++|++||||||+++.|+..++    +.+.++.|.++..+...     ..+..+..........+.+......|..+
T Consensus         3 ~liil~G~pGSGKSTla~~L~~~~~----~~~~l~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v   78 (300)
T PHA02530          3 KIILTVGVPGSGKSTWAREFAAKNP----KAVNVNRDDLRQSLFGHGEWGEYKFTKEKEDLVTKAQEAAALAALKSGKSV   78 (300)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCC----CCEEEeccHHHHHhcCCCcccccccChHHHHHHHHHHHHHHHHHHHcCCeE
Confidence            5788999999999999999999873    35788888877544221     12221111111111122222233456666


Q ss_pred             eeccCChHHHHHHHHHHhCCC--CCccEEEEeCChhHHHhcChhh
Q 024315          178 IACLISPYRKDRDACRSMLPE--GDFIEVFMDVPLQVCEARDPKG  220 (269)
Q Consensus       178 iv~~~~~~~~~r~~ar~ll~~--~~~~~i~ld~p~~~l~~R~~k~  220 (269)
                      +++.......+++...+++..  ..+..+++++|.+.+.+|..++
T Consensus        79 Iid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R  123 (300)
T PHA02530         79 IISDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKR  123 (300)
T ss_pred             EEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHcc
Confidence            776665555666655555432  2455589999999999998655

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=98.79  E-value=3.5e-08  Score=81.46  Aligned_cols=145  Identities=21%  Similarity=0.307  Sum_probs=84.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHHH-------HHHHHHHHHHhCCcc
Q 024315          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIR-------RIGEVAKLFADAGVI  176 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~-------~l~~~a~~~~~~g~~  176 (269)
                      +|.|-|++||||||+++.|+..+.-+     +++.-.+...+.+..|++-++..+.-.       .+......+...+-.
T Consensus         2 ~ItIsG~pGsG~TTva~~lAe~~gl~-----~vsaG~iFR~~A~e~gmsl~ef~~~AE~~p~iD~~iD~rq~e~a~~~nv   76 (179)
T COG1102           2 VITISGLPGSGKTTVARELAEHLGLK-----LVSAGTIFREMARERGMSLEEFSRYAEEDPEIDKEIDRRQKELAKEGNV   76 (179)
T ss_pred             EEEeccCCCCChhHHHHHHHHHhCCc-----eeeccHHHHHHHHHcCCCHHHHHHHHhcCchhhHHHHHHHHHHHHcCCe
Confidence            57899999999999999999988643     444434444555556777665542211       111222223333333


Q ss_pred             eeeccCChHHHHHHHHHHhCC-CCCccEEEEeCChhHHHhcChhh----HHHH---Hh------cCccccccccccccCC
Q 024315          177 CIACLISPYRKDRDACRSMLP-EGDFIEVFMDVPLQVCEARDPKG----LYKL---AR------EGKVKGFTGIDDPYEP  242 (269)
Q Consensus       177 ~iv~~~~~~~~~r~~ar~ll~-~~~~~~i~ld~p~~~l~~R~~k~----l~~~---~r------~g~~~~~~~i~~~~e~  242 (269)
                      ++-..+.+         -++. .++ +.||+.+|+++..+|..++    +...   ..      .-++..++++|-..  
T Consensus        77 VlegrLA~---------Wi~k~~ad-lkI~L~Apl~vRa~Ria~REgi~~~~a~~~~~~RE~se~kRY~~~YgIDidD--  144 (179)
T COG1102          77 VLEGRLAG---------WIVREYAD-LKIWLKAPLEVRAERIAKREGIDVDEALAETVEREESEKKRYKKIYGIDIDD--  144 (179)
T ss_pred             EEhhhhHH---------HHhccccc-eEEEEeCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCcc--
Confidence            33222221         1222 233 3489999999999988655    1111   11      11334466777221  


Q ss_pred             CCCCCeEEEcCCCcCHHHHHHHHh
Q 024315          243 PLNCEVGVHVWYRFELAETWRITK  266 (269)
Q Consensus       243 p~~~e~~id~~~~~~~~~~~~i~~  266 (269)
                      .+-.|++|+|+ .++++++..|+.
T Consensus       145 lSiyDLVinTs-~~~~~~v~~il~  167 (179)
T COG1102         145 LSIYDLVINTS-KWDPEEVFLILL  167 (179)
T ss_pred             ceeeEEEEecc-cCCHHHHHHHHH
Confidence            33358999995 999999888764

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=98.78  E-value=1.5e-08  Score=98.76  Aligned_cols=130  Identities=16%  Similarity=0.146  Sum_probs=89.6

Q ss_pred             eecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHHHHHHHHHHHHHhCCcc
Q 024315           97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVI  176 (269)
Q Consensus        97 l~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~l~~~a~~~~~~g~~  176 (269)
                      +.-.+.+++.++|++||||||+++.+....     |.++++-|.+.                .+......+......|..
T Consensus       364 ~~~~~p~LVil~G~pGSGKST~A~~l~~~~-----g~~~vn~D~lg----------------~~~~~~~~a~~~L~~G~s  422 (526)
T TIGR01663       364 LDDAPCEMVIAVGFPGAGKSHFCKKFFQPA-----GYKHVNADTLG----------------STQNCLTACERALDQGKR  422 (526)
T ss_pred             cCCCCceEEEEECCCCCCHHHHHHHHHHHc-----CCeEECcHHHH----------------HHHHHHHHHHHHHhCCCc
Confidence            344678999999999999999999998753     35677766542                112222334445567888


Q ss_pred             eeeccCChHHHHHHHHHHhCCCC--CccEEEEeCChhHHHhcChhhHHHHHhcCcc--ccccccccccCCCCCCC
Q 024315          177 CIACLISPYRKDRDACRSMLPEG--DFIEVFMDVPLQVCEARDPKGLYKLAREGKV--KGFTGIDDPYEPPLNCE  247 (269)
Q Consensus       177 ~iv~~~~~~~~~r~~ar~ll~~~--~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~--~~~~~i~~~~e~p~~~e  247 (269)
                      ++++.....+..|..+.+++...  ++..++++.|.+.|..|+..+.........+  ..+..+...||+|...|
T Consensus       423 VVIDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R~~~~~s~~~vp~~v~~~~~k~fE~Pt~~E  497 (526)
T TIGR01663       423 CAIDNTNPDAASRAKFLQCARAAGIPCRCFLFNAPLAQAKHNIAFRELSDSAHIKIKDMVFNGMKKKFEAPALAE  497 (526)
T ss_pred             EEEECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHhhccCCcccCCCCHHHHHHHHhhCCCCCccc
Confidence            88888888777887777666543  5666899999999999986664321222233  22556667899998666

Note that the EC number for the kinase function is: 2.7.1.78

>PRK04182 cytidylate kinase; Provisional

Probab=98.74  E-value=6.8e-08  Score=80.47  Aligned_cols=147  Identities=18%  Similarity=0.221  Sum_probs=73.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHH-------HHHHHHHHHHHH-hCCc
Q 024315          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVEN-------IRRIGEVAKLFA-DAGV  175 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~-------~~~l~~~a~~~~-~~g~  175 (269)
                      +|+|+|++||||||+++.|+..+.-+     +++-+++........++...+..+.       ...+........ ..+.
T Consensus         2 ~I~i~G~~GsGKstia~~la~~lg~~-----~id~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (180)
T PRK04182          2 IITISGPPGSGKTTVARLLAEKLGLK-----HVSAGEIFRELAKERGMSLEEFNKYAEEDPEIDKEIDRRQLEIAEKEDN   76 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCc-----EecHHHHHHHHHHHcCCCHHHHHHHhhcCchHHHHHHHHHHHHHhcCCC
Confidence            68999999999999999999887532     5663222211111123322221110       011111111122 2222


Q ss_pred             ceeeccCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhH----HHH---------HhcCccccccccccccCC
Q 024315          176 ICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGL----YKL---------AREGKVKGFTGIDDPYEP  242 (269)
Q Consensus       176 ~~iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l----~~~---------~r~g~~~~~~~i~~~~e~  242 (269)
                      .++......         .++.......|++++|++.+.+|..++.    .+.         .+...+..+++.+..  .
T Consensus        77 ~Vi~g~~~~---------~~~~~~~~~~V~l~a~~e~~~~Rl~~r~~~~~~~a~~~~~~~d~~~~~~~~~~~~~~~~--~  145 (180)
T PRK04182         77 VVLEGRLAG---------WMAKDYADLKIWLKAPLEVRAERIAEREGISVEEALEETIEREESEAKRYKEYYGIDID--D  145 (180)
T ss_pred             EEEEEeecc---------eEecCCCCEEEEEECCHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCcc--c
Confidence            222211111         0111112345899999999988875431    111         011112233333322  2


Q ss_pred             CCCCCeEEEcCCCcCHHHHHH-HHhh
Q 024315          243 PLNCEVGVHVWYRFELAETWR-ITKW  267 (269)
Q Consensus       243 p~~~e~~id~~~~~~~~~~~~-i~~~  267 (269)
                      +..++++|||+ ..++++|.. |.+.
T Consensus       146 ~~~~d~~idt~-~~~~~~~~~~I~~~  170 (180)
T PRK04182        146 LSIYDLVINTS-RWDPEGVFDIILTA  170 (180)
T ss_pred             cccccEEEECC-CCCHHHHHHHHHHH
Confidence            45688999995 788999987 5543

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=98.74  E-value=9.6e-08  Score=92.80  Aligned_cols=51  Identities=29%  Similarity=0.343  Sum_probs=40.9

Q ss_pred             eeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315           85 HKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (269)
Q Consensus        85 ~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~  141 (269)
                      ..+.++-.|+..+.. +|.+++|.|+|||||||+++.|++.|.     ..+++.+.+
T Consensus       268 ~~g~~RLIDN~~~~~-~~~ii~i~G~sgsGKst~a~~la~~l~-----~~~~d~g~~  318 (512)
T PRK13477        268 RCGSTRLIDNVFLMK-RQPIIAIDGPAGAGKSTVTRAVAKKLG-----LLYLDTGAM  318 (512)
T ss_pred             EeCCeEEEeeeEecc-CCcEEEEECCCCCCHHHHHHHHHHHcC-----CeEecCCce
Confidence            345677778888766 889999999999999999999999884     456765544

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.72  E-value=3.9e-08  Score=104.00  Aligned_cols=145  Identities=18%  Similarity=0.281  Sum_probs=97.3

Q ss_pred             ceEEeeC-ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC---------cccccCCC
Q 024315           81 NILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR---------HGLNRDLS  150 (269)
Q Consensus        81 ~~~~~~~-~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~---------~~l~~~~g  150 (269)
                      ...|... +.....+.++.+++|++++++|+-|||||+|+.+|.|.++ .-+|.+.++|.-.-         ..++.++-
T Consensus       525 sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~-~~sG~v~v~gsiaYv~Q~pWI~ngTvreNIL  603 (1381)
T KOG0054|consen  525 SFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP-KLSGSVAVNGSVAYVPQQPWIQNGTVRENIL  603 (1381)
T ss_pred             eEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcc-cccceEEEcCeEEEeccccHhhCCcHHHhhh
Confidence            3456542 2225678899999999999999999999999999999995 55889999886211         01222333


Q ss_pred             CChhhHHHHHHHHHHHHH------HHHhCCccee---eccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhh
Q 024315          151 FKAEDRVENIRRIGEVAK------LFADAGVICI---ACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKG  220 (269)
Q Consensus       151 ~~~~~~~~~~~~l~~~a~------~~~~~g~~~i---v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~  220 (269)
                      |..+-..++++.+-+...      ++..--..++   ...++++|++| ..||++.+++++  .++|-|+..+|....+.
T Consensus       604 FG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adI--YLLDDplSAVDahvg~~  681 (1381)
T KOG0054|consen  604 FGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADI--YLLDDPLSAVDAHVGKH  681 (1381)
T ss_pred             cCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCE--EEEcCcchhhhHhhhHH
Confidence            332222334444433322      2222122233   23457888888 699999999888  79999999999999888


Q ss_pred             HHHHHhcC
Q 024315          221 LYKLAREG  228 (269)
Q Consensus       221 l~~~~r~g  228 (269)
                      +++.--.|
T Consensus       682 if~~ci~~  689 (1381)
T KOG0054|consen  682 IFEECIRG  689 (1381)
T ss_pred             HHHHHHHh
Confidence            77554333

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=98.72  E-value=2.7e-08  Score=94.91  Aligned_cols=139  Identities=21%  Similarity=0.237  Sum_probs=81.7

Q ss_pred             ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccE-EEECCeecCc---ccccCC---CCCh
Q 024315           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLT-YILDGDNCRH---GLNRDL---SFKA  153 (269)
Q Consensus        81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~-i~l~g~~~~~---~l~~~~---g~~~  153 (269)
                      ++++.++......++++++..|..++|||+||+|||||+++|+.- +-.+-++ =-+.|+++.+   .+..+.   .+..
T Consensus        85 ~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~-~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~  163 (582)
T KOG0062|consen   85 NFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANG-QVSGFHVEQEVRGDDTEALQSVLESDTERLDFLA  163 (582)
T ss_pred             eeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHhc-CcCccCchhheeccchHHHhhhhhccHHHHHHHH
Confidence            455555555566778999999999999999999999999999971 1110000 0122333321   111110   0111


Q ss_pred             hhHHHHHH-HHHHHHH-HHHhCCcc------eeeccCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHH
Q 024315          154 EDRVENIR-RIGEVAK-LFADAGVI------CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLY  222 (269)
Q Consensus       154 ~~~~~~~~-~l~~~a~-~~~~~g~~------~iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~  222 (269)
                      ++..-..+ .+.++.. ++...|..      .+..++.+++=..+.+|+++.+|++  +++|+|+..|+-+...=|.
T Consensus       164 ~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDl--LLLDEPTNhLDv~av~WLe  238 (582)
T KOG0062|consen  164 EEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDL--LLLDEPTNHLDVVAVAWLE  238 (582)
T ss_pred             hhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCE--EeecCCcccchhHHHHHHH
Confidence            11000011 1223333 44455553      2344555555445899999999999  9999999999877654443

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.71  E-value=2.6e-07  Score=82.76  Aligned_cols=135  Identities=20%  Similarity=0.268  Sum_probs=80.1

Q ss_pred             eeccCcceecCCCeEEEEEcCCCChHHHHHHHHH-----Hhhcc----CC-----------ccEEEECCeecCcccccCC
Q 024315           90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALS-----QALHW----RG-----------KLTYILDGDNCRHGLNRDL  149 (269)
Q Consensus        90 ~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~-----~~l~~----~~-----------~g~i~l~g~~~~~~l~~~~  149 (269)
                      ....++++.++.|.+++|+|.||||||||++.+.     +.+..    ++           ...+.+|..++....+...
T Consensus         9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~   88 (261)
T cd03271           9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP   88 (261)
T ss_pred             hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence            3456778889999999999999999999998552     22211    10           2256777766643221110


Q ss_pred             ---------------------CCCh--------------------hhHHHHHHH---HHHHHHHHHhCCcce-----eec
Q 024315          150 ---------------------SFKA--------------------EDRVENIRR---IGEVAKLFADAGVIC-----IAC  180 (269)
Q Consensus       150 ---------------------g~~~--------------------~~~~~~~~~---l~~~a~~~~~~g~~~-----iv~  180 (269)
                                           .|.+                    .+..+.+..   +.+....+...++..     ...
T Consensus        89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~vgL~~l~l~~~~~  168 (261)
T cd03271          89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDVGLGYIKLGQPAT  168 (261)
T ss_pred             HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHcCCchhhhcCccc
Confidence                                 0111                    111111111   112223344444432     133


Q ss_pred             cCChHHHHH-HHHHHhCCC---CCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315          181 LISPYRKDR-DACRSMLPE---GDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       181 ~~~~~~~~r-~~ar~ll~~---~~~~~i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      ..++++++| ..+++++.+   +++  +++|||+..++....+.+.+.++
T Consensus       169 ~LSgGe~QRl~LAraL~~~~~~p~l--llLDEPtsgLD~~~~~~l~~~L~  216 (261)
T cd03271         169 TLSGGEAQRIKLAKELSKRSTGKTL--YILDEPTTGLHFHDVKKLLEVLQ  216 (261)
T ss_pred             cCCHHHHHHHHHHHHHhcCCCCCcE--EEEECCCCCCCHHHHHHHHHHHH
Confidence            446666666 688888875   466  89999999999998887665544

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional

Probab=98.68  E-value=1.5e-08  Score=95.10  Aligned_cols=158  Identities=24%  Similarity=0.286  Sum_probs=88.2

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHH-HHHHHHHHHHHHhCCccee
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVEN-IRRIGEVAKLFADAGVICI  178 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~-~~~l~~~a~~~~~~g~~~i  178 (269)
                      ..|.++||+|+||||||||+..|.+.|... ..+..+...      ..+..+..+++... +++.+..+..+...+...+
T Consensus         3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l~~~-~~V~~ik~~------~~~~~~d~~~~d~~~~~~aga~~~~~~~~~~~~~   75 (369)
T PRK14490          3 FHPFEIAFCGYSGSGKTTLITALVRRLSER-FSVGYYKHG------CHRFDIDREGKDSDLARKAGASTVMISDPEKHAL   75 (369)
T ss_pred             CCCEEEEEEeCCCCCHHHHHHHHHHHHhhC-ceEEEEEeC------CCCCCCCcccchHHHHHhccCcEEEEecCCEEEE
Confidence            468899999999999999999999998644 222333211      11123444444332 2222222222333344444


Q ss_pred             eccCChHHHHHHHHHHhCCCCC--ccEEEEeCChh--HHHhcChhhHHHHHhcCccccccccccccCCCCCCCeEEEcCC
Q 024315          179 ACLISPYRKDRDACRSMLPEGD--FIEVFMDVPLQ--VCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEVGVHVWY  254 (269)
Q Consensus       179 v~~~~~~~~~r~~ar~ll~~~~--~~~i~ld~p~~--~l~~R~~k~l~~~~r~g~~~~~~~i~~~~e~p~~~e~~id~~~  254 (269)
                      +....+   .+...+..+...+  ++|.|.++|..  +|..|+.+.+ ..+..|+..++.++...+++|..++..++..+
T Consensus        76 ~~~~~~---~~~~~~~~~~~~D~vlvEG~k~~~~pki~~~~~~~~~~-~~~~~~~~~~v~av~~~~~~~~~~~~~~p~~~  151 (369)
T PRK14490         76 IAGGPP---DPLLERGAFLDCDLLLVEGLKELPLPKILLVDRERKIL-DLLEQGSVTNVVALVVPDDPASYPDFGLPVFH  151 (369)
T ss_pred             EEeCCC---ChHHHHhccCCCCEEEECCCCCCCCCeEEEEeCCCCcc-cccccCCCCCEEEEEECCcccccccCCCcccC
Confidence            433332   2233333444445  34457788887  6665654433 34556677788888877777654455455323


Q ss_pred             CcCHHHHHH-HHhhc
Q 024315          255 RFELAETWR-ITKWL  268 (269)
Q Consensus       255 ~~~~~~~~~-i~~~~  268 (269)
                      .-++++.+. |.+|+
T Consensus       152 ~~~~~~~~~~i~~~~  166 (369)
T PRK14490        152 RDDIAAIADFIEGHL  166 (369)
T ss_pred             cccHHHHHHHHHHHH
Confidence            455666665 66654

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.68  E-value=5.5e-08  Score=85.53  Aligned_cols=45  Identities=13%  Similarity=0.084  Sum_probs=33.1

Q ss_pred             cCChHHHHH-HHHHHhC----CCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          181 LISPYRKDR-DACRSML----PEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       181 ~~~~~~~~r-~~ar~ll----~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      ..++++++| ..+++++    ..+++  +++|||+..++....+.+++.+++
T Consensus       158 ~lS~G~~~r~~la~~l~~~~~~~~~i--lllDEp~~~ld~~~~~~~~~~l~~  207 (243)
T cd03272         158 QLSGGQKSLVALALIFAIQKCDPAPF--YLFDEIDAALDAQYRTAVANMIKE  207 (243)
T ss_pred             ccCHHHHHHHHHHHHHHHhccCCCCE--EEEECCccCCCHHHHHHHHHHHHH
Confidence            345566666 5777774    34677  899999999999988887766553

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PRK13948 shikimate kinase; Provisional

Probab=98.67  E-value=5.6e-08  Score=82.57  Aligned_cols=151  Identities=19%  Similarity=0.222  Sum_probs=78.4

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHH-----HHHHHH-HHHHHHHHhC
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRV-----ENIRRI-GEVAKLFADA  173 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~-----~~~~~l-~~~a~~~~~~  173 (269)
                      +++..|.|+|.+||||||+++.|+..+..+     ++|-|......   .+.+..+..     ..++.+ .++...+...
T Consensus         8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~-----~iD~D~~ie~~---~g~si~~if~~~Ge~~fR~~E~~~l~~l~~~   79 (182)
T PRK13948          8 RPVTWVALAGFMGTGKSRIGWELSRALMLH-----FIDTDRYIERV---TGKSIPEIFRHLGEAYFRRCEAEVVRRLTRL   79 (182)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHcCCC-----EEECCHHHHHH---HhCCHHHHHHHhCHHHHHHHHHHHHHHHHhc
Confidence            356889999999999999999999988533     67777554221   133332211     111211 1112222222


Q ss_pred             CcceeeccCCh---HHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcC----ccccccccccc-cCCCCC
Q 024315          174 GVICIACLISP---YRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREG----KVKGFTGIDDP-YEPPLN  245 (269)
Q Consensus       174 g~~~iv~~~~~---~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g----~~~~~~~i~~~-~e~p~~  245 (269)
                      +-. +++.+.+   ..+.++.+++   ...+  ||++.|.+.+.+|....-......+    .+..+.....+ |+   .
T Consensus        80 ~~~-VIa~GgG~v~~~~n~~~l~~---~g~v--V~L~~~~e~l~~Rl~~~~RPll~~~~~~~~l~~l~~~R~~~Y~---~  150 (182)
T PRK13948         80 DYA-VISLGGGTFMHEENRRKLLS---RGPV--VVLWASPETIYERTRPGDRPLLQVEDPLGRIRTLLNEREPVYR---Q  150 (182)
T ss_pred             CCe-EEECCCcEEcCHHHHHHHHc---CCeE--EEEECCHHHHHHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHH---h
Confidence            222 3333221   2334444332   3233  8999999999998732210001110    01111111122 42   2


Q ss_pred             CCeEEEcCCCcCHHHHHH-HHhhc
Q 024315          246 CEVGVHVWYRFELAETWR-ITKWL  268 (269)
Q Consensus       246 ~e~~id~~~~~~~~~~~~-i~~~~  268 (269)
                      ++++|+|+ ..++++++. |.+.|
T Consensus       151 a~~~i~t~-~~~~~ei~~~i~~~l  173 (182)
T PRK13948        151 ATIHVSTD-GRRSEEVVEEIVEKL  173 (182)
T ss_pred             CCEEEECC-CCCHHHHHHHHHHHH
Confidence            78999995 566666665 76654

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=98.66  E-value=1.2e-07  Score=79.66  Aligned_cols=150  Identities=18%  Similarity=0.179  Sum_probs=74.9

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHH-----HHHHHH-HHHHHHHHhCCc
Q 024315          102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRV-----ENIRRI-GEVAKLFADAGV  175 (269)
Q Consensus       102 g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~-----~~~~~l-~~~a~~~~~~g~  175 (269)
                      ...|+|+|++||||||+++.|++.+.-+     +++.|.......   +.+..+..     ..++.. .+....+...+.
T Consensus         4 ~~~I~liG~~GaGKStl~~~La~~l~~~-----~vd~D~~i~~~~---g~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~   75 (172)
T PRK05057          4 KRNIFLVGPMGAGKSTIGRQLAQQLNME-----FYDSDQEIEKRT---GADIGWVFDVEGEEGFRDREEKVINELTEKQG   75 (172)
T ss_pred             CCEEEEECCCCcCHHHHHHHHHHHcCCc-----EEECCchHHHHh---CcCHhHHHHHhCHHHHHHHHHHHHHHHHhCCC
Confidence            4568999999999999999999987422     566654332111   11111110     011111 111112222222


Q ss_pred             ceeeccCCh---HHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHH-HHhcCcccc-cc---ccc-cccCCCCCC
Q 024315          176 ICIACLISP---YRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK-LAREGKVKG-FT---GID-DPYEPPLNC  246 (269)
Q Consensus       176 ~~iv~~~~~---~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~-~~r~g~~~~-~~---~i~-~~~e~p~~~  246 (269)
                      . ++..+.+   ....+..++    +..+ .||++.|++.|.+|...+-.+ ...++.... +.   ..+ ..|+.  .+
T Consensus        76 ~-vi~~ggg~v~~~~~~~~l~----~~~~-vv~L~~~~e~~~~Ri~~~~~rP~~~~~~~~~~~~~l~~~R~~~Y~~--~A  147 (172)
T PRK05057         76 I-VLATGGGSVKSRETRNRLS----ARGV-VVYLETTIEKQLARTQRDKKRPLLQVDDPREVLEALANERNPLYEE--IA  147 (172)
T ss_pred             E-EEEcCCchhCCHHHHHHHH----hCCE-EEEEeCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHh--hC
Confidence            2 2323221   123333333    2333 389999999999987432100 011111100 11   111 22433  26


Q ss_pred             CeEEEcCCCcCHHHHHH-HHhhc
Q 024315          247 EVGVHVWYRFELAETWR-ITKWL  268 (269)
Q Consensus       247 e~~id~~~~~~~~~~~~-i~~~~  268 (269)
                      +++|||+ ..+++++.. |.++|
T Consensus       148 d~~idt~-~~s~~ei~~~i~~~l  169 (172)
T PRK05057        148 DVTIRTD-DQSAKVVANQIIHML  169 (172)
T ss_pred             CEEEECC-CCCHHHHHHHHHHHH
Confidence            7999995 778888887 87775

>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]

Probab=98.64  E-value=3e-07  Score=88.95  Aligned_cols=145  Identities=20%  Similarity=0.217  Sum_probs=94.7

Q ss_pred             eEEeeCceeec-------cCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee----cC--------
Q 024315           82 ILWHKNSVDKR-------DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN----CR--------  142 (269)
Q Consensus        82 ~~~~~~~v~~~-------~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~----~~--------  142 (269)
                      ++++.+++..+       ++.++.+..|..+.|+||||||||+|++.|.++-+ ..+|.+..-.+.    +.        
T Consensus       434 i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp-~~~G~l~k~~~~~~~~lfflPQrPYm  512 (659)
T KOG0060|consen  434 IEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWP-STGGKLTKPTDGGPKDLFFLPQRPYM  512 (659)
T ss_pred             EEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccc-cCCCeEEecccCCCCceEEecCCCCc
Confidence            55665554444       45789999999999999999999999999999875 334444332222    11        


Q ss_pred             --cccccCCCCCh------------hhHHHHHHHHHHHHHHHHhCCcce---e---eccCChHHHHH-HHHHHhCCCCCc
Q 024315          143 --HGLNRDLSFKA------------EDRVENIRRIGEVAKLFADAGVIC---I---ACLISPYRKDR-DACRSMLPEGDF  201 (269)
Q Consensus       143 --~~l~~~~g~~~------------~~~~~~~~~l~~~a~~~~~~g~~~---i---v~~~~~~~~~r-~~ar~ll~~~~~  201 (269)
                        -.|+..+-|..            ++..+.+. ..+..++....|-..   +   .+.++++++|| ..||-+..+|++
T Consensus       513 t~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le-~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~  591 (659)
T KOG0060|consen  513 TLGTLRDQVIYPLKAEDMDSKSASDEDILRILE-NVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKF  591 (659)
T ss_pred             cccchhheeeccCccccccccCCCHHHHHHHHH-HhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCce
Confidence              02333332321            11111111 123344454444332   2   24468888888 578888889999


Q ss_pred             cEEEEeCChhHHHhcChhhHHHHHhcCcc
Q 024315          202 IEVFMDVPLQVCEARDPKGLYKLAREGKV  230 (269)
Q Consensus       202 ~~i~ld~p~~~l~~R~~k~l~~~~r~g~~  230 (269)
                        .++||.+..+.......+|+..|+-.+
T Consensus       592 --AiLDE~TSAv~~dvE~~~Yr~~r~~gi  618 (659)
T KOG0060|consen  592 --AILDECTSAVTEDVEGALYRKCREMGI  618 (659)
T ss_pred             --EEeechhhhccHHHHHHHHHHHHHcCC
Confidence              899999999999998889998887665

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=98.63  E-value=4.3e-08  Score=76.11  Aligned_cols=46  Identities=30%  Similarity=0.200  Sum_probs=39.6

Q ss_pred             eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315           90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (269)
Q Consensus        90 ~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~  142 (269)
                      .+.+..++.+++|++++|+||||||||||++++.       +|.+.++|+++.
T Consensus         3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~-------~G~i~~~g~di~   48 (107)
T cd00820           3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI-------KRKHRLVGDDNV   48 (107)
T ss_pred             eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh-------CCeEEEeeEeHH
Confidence            3456678899999999999999999999999985       467889998875

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK08233 hypothetical protein; Provisional

Probab=98.61  E-value=4.4e-07  Score=75.80  Aligned_cols=38  Identities=32%  Similarity=0.388  Sum_probs=30.1

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~  140 (269)
                      ++.+|+|.|++||||||+++.|++.+..  ...+.++...
T Consensus         2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~--~~~~~~d~~~   39 (182)
T PRK08233          2 KTKIITIAAVSGGGKTTLTERLTHKLKN--SKALYFDRYD   39 (182)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhCCC--CceEEECCEE
Confidence            4678999999999999999999998842  3455666554

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=98.59  E-value=6.9e-08  Score=81.06  Aligned_cols=48  Identities=21%  Similarity=0.286  Sum_probs=42.3

Q ss_pred             cCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315           93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (269)
Q Consensus        93 ~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~  142 (269)
                      .-.|..+..|+++=++||||||||||+..++|.+  +++|.|.++|.++.
T Consensus        16 ~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~--~~sGsi~~~G~~l~   63 (248)
T COG4138          16 GPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT--SGSGSIQFAGQPLE   63 (248)
T ss_pred             cccccccccceEEEEECCCCccHHHHHHHHhCCC--CCCceEEECCcchh
Confidence            3446677899999999999999999999999986  57899999999876

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=98.57  E-value=5.4e-07  Score=74.45  Aligned_cols=146  Identities=17%  Similarity=0.274  Sum_probs=74.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHH-------HHHHHHHHHHHHH-hCCc
Q 024315          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE-------NIRRIGEVAKLFA-DAGV  175 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~-------~~~~l~~~a~~~~-~~g~  175 (269)
                      +|+|.|++||||||+++.|+..+.-+     +++.+++.+.+....+........       ....+......+. ..+.
T Consensus         2 iI~i~G~~GSGKstia~~la~~lg~~-----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   76 (171)
T TIGR02173         2 IITISGPPGSGKTTVAKILAEKLSLK-----LISAGDIFRELAAKMGLDLIEFLNYAEENPEIDKKIDRRIHEIALKEKN   76 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCc-----eecHHHHHHHHHHHcCCCHHHHHHHHhcCcHHHHHHHHHHHHHHhcCCC
Confidence            68999999999999999999877532     566554433222222333222110       0111111111121 2222


Q ss_pred             ceeeccCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhH---HHH----------HhcCccccccccccccCC
Q 024315          176 ICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGL---YKL----------AREGKVKGFTGIDDPYEP  242 (269)
Q Consensus       176 ~~iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l---~~~----------~r~g~~~~~~~i~~~~e~  242 (269)
                      .++.......      .  +-..++ +.|++++|.+.+.+|..++.   ...          .+...+..+++.+  +..
T Consensus        77 ~Vi~g~~~~~------~--~~~~~d-~~v~v~a~~~~r~~R~~~R~~~s~~~a~~~~~~~d~~~~~~~~~~~~~~--~~~  145 (171)
T TIGR02173        77 VVLESRLAGW------I--VREYAD-VKIWLKAPLEVRARRIAKREGKSLTVARSETIEREESEKRRYLKFYGID--IDD  145 (171)
T ss_pred             EEEEecccce------e--ecCCcC-EEEEEECCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhCCC--ccc
Confidence            2222211111      0  011123 34899999999988875541   000          0011111122222  234


Q ss_pred             CCCCCeEEEcCCCcCHHHHHH-HHhh
Q 024315          243 PLNCEVGVHVWYRFELAETWR-ITKW  267 (269)
Q Consensus       243 p~~~e~~id~~~~~~~~~~~~-i~~~  267 (269)
                      |.+-|++|||+ .+++++ .. |.+.
T Consensus       146 ~~~ydl~i~t~-~~~~~~-~~~i~~~  169 (171)
T TIGR02173       146 LSIYDLVINTS-NWDPNN-VDIILDA  169 (171)
T ss_pred             cccccEEEECC-CCCHHH-HHHHHHH
Confidence            56678999995 888998 55 6553

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>PRK13949 shikimate kinase; Provisional

Probab=98.56  E-value=3.8e-08  Score=82.48  Aligned_cols=147  Identities=16%  Similarity=0.135  Sum_probs=72.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHH-----HHHHHH-HHHHHHHHhCCcce
Q 024315          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRV-----ENIRRI-GEVAKLFADAGVIC  177 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~-----~~~~~l-~~~a~~~~~~g~~~  177 (269)
                      .|.|+|++||||||+++.|++.+.-+     +++-|.+...   ..+.+..+..     +.++.+ .++...+....- .
T Consensus         3 ~I~liG~~GsGKstl~~~La~~l~~~-----~id~D~~i~~---~~~~~~~~~~~~~g~~~fr~~e~~~l~~l~~~~~-~   73 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALARELGLS-----FIDLDFFIEN---RFHKTVGDIFAERGEAVFRELERNMLHEVAEFED-V   73 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCC-----eecccHHHHH---HHCccHHHHHHHhCHHHHHHHHHHHHHHHHhCCC-E
Confidence            48899999999999999999988533     5665544211   1121211110     111111 111121222221 2


Q ss_pred             eeccCChH---HHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhh--HHHHHhcCcccc----c----cccccccCCCC
Q 024315          178 IACLISPY---RKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKG--LYKLAREGKVKG----F----TGIDDPYEPPL  244 (269)
Q Consensus       178 iv~~~~~~---~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~--l~~~~r~g~~~~----~----~~i~~~~e~p~  244 (269)
                      +++.+.+.   .+.++.+    .+.+++ ||++.|.+.+.+|....  ..........+.    +    ......|+.  
T Consensus        74 vis~Ggg~~~~~~~~~~l----~~~~~v-i~L~~~~~~~~~Ri~~~~~~RP~~~~~~~~~~~~~i~~l~~~R~~~Y~~--  146 (169)
T PRK13949         74 VISTGGGAPCFFDNMELM----NASGTT-VYLKVSPEVLFVRLRLAKQQRPLLKGKSDEELLDFIIEALEKRAPFYRQ--  146 (169)
T ss_pred             EEEcCCcccCCHHHHHHH----HhCCeE-EEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHh--
Confidence            33333221   2223333    223343 89999999998886421  100010000000    0    111123444  


Q ss_pred             CCCeEEEcCCCcCHHHHHH-HHhhc
Q 024315          245 NCEVGVHVWYRFELAETWR-ITKWL  268 (269)
Q Consensus       245 ~~e~~id~~~~~~~~~~~~-i~~~~  268 (269)
                       ++++||++ ..+++++.. |.+.|
T Consensus       147 -ad~~id~~-~~~~~e~~~~I~~~~  169 (169)
T PRK13949        147 -AKIIFNAD-KLEDESQIEQLVQRL  169 (169)
T ss_pred             -CCEEEECC-CCCHHHHHHHHHHhC
Confidence             46999996 567777777 77654

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=98.55  E-value=4e-07  Score=82.65  Aligned_cols=146  Identities=18%  Similarity=0.167  Sum_probs=74.7

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHHHHHHHHHHHH-HhCCccee
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLF-ADAGVICI  178 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~l~~~a~~~-~~~g~~~i  178 (269)
                      ...++++|+|++||||||+++.|+.      .|...+++.+..            .    +..+.+....- ....+...
T Consensus         4 ~~~~~i~i~G~~GsGKtt~~~~l~~------~g~~~~d~~~~~------------L----~~~l~~~~~~~~~~~~~av~   61 (288)
T PRK05416          4 APMRLVIVTGLSGAGKSVALRALED------LGYYCVDNLPPS------------L----LPKLVELLAQSGGIRKVAVV   61 (288)
T ss_pred             CCceEEEEECCCCCcHHHHHHHHHH------cCCeEECCcCHH------------H----HHHHHHHHHhcCCCCCeEEE
Confidence            4567999999999999999999963      234566553321            1    11111111110 01223333


Q ss_pred             eccCCh--HHHHHHHHHHhCCC-CCccEEEEeCChhHHHhcChhhH--HHHHhcCcc-ccccccccccCCC-CCCCeEEE
Q 024315          179 ACLISP--YRKDRDACRSMLPE-GDFIEVFMDVPLQVCEARDPKGL--YKLAREGKV-KGFTGIDDPYEPP-LNCEVGVH  251 (269)
Q Consensus       179 v~~~~~--~~~~r~~ar~ll~~-~~~~~i~ld~p~~~l~~R~~k~l--~~~~r~g~~-~~~~~i~~~~e~p-~~~e~~id  251 (269)
                      ++..+.  .+..++.+..+... ..+..||+++|.+.+.+|..+.-  ......... +.+....+.+++- ..++++||
T Consensus        62 iD~r~~~~~~~~~~~~~~L~~~g~~~~iI~L~a~~e~L~~Rl~~~rr~RPLl~~~~l~e~I~~eR~~l~pl~~~ADivID  141 (288)
T PRK05416         62 IDVRSRPFFDDLPEALDELRERGIDVRVLFLDASDEVLIRRYSETRRRHPLSGDGSLLEGIELERELLAPLRERADLVID  141 (288)
T ss_pred             EccCchhhHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHhhcccCCCccCCccHHHHHHHHHhhhhhHHHhCCEEEE
Confidence            333322  12233344443333 23344899999999999964210  000111000 0011112222221 23789999


Q ss_pred             cCCCcCHHHHHH-HHhhc
Q 024315          252 VWYRFELAETWR-ITKWL  268 (269)
Q Consensus       252 ~~~~~~~~~~~~-i~~~~  268 (269)
                      |+ ..+++++.. |.+++
T Consensus       142 Ts-~ls~~el~e~I~~~l  158 (288)
T PRK05416        142 TS-ELSVHQLRERIRERF  158 (288)
T ss_pred             CC-CCCHHHHHHHHHHHH
Confidence            95 777888777 77654

>PRK13947 shikimate kinase; Provisional

Probab=98.55  E-value=9.2e-07  Score=73.41  Aligned_cols=145  Identities=17%  Similarity=0.185  Sum_probs=74.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHH-----HHHHHH-HHHHHHHHhCCcce
Q 024315          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRV-----ENIRRI-GEVAKLFADAGVIC  177 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~-----~~~~~l-~~~a~~~~~~g~~~  177 (269)
                      .|.|+|++||||||+++.|+..|..+     +++.|......   .|.+..+..     ..++.. ..+...+...+..+
T Consensus         3 ~I~l~G~~GsGKst~a~~La~~lg~~-----~id~d~~~~~~---~g~~~~~~~~~~ge~~~~~~e~~~~~~l~~~~~~v   74 (171)
T PRK13947          3 NIVLIGFMGTGKTTVGKRVATTLSFG-----FIDTDKEIEKM---TGMTVAEIFEKDGEVRFRSEEKLLVKKLARLKNLV   74 (171)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhCCC-----EEECchhhhhh---cCCcHHHHHHHhChHHHHHHHHHHHHHHhhcCCeE
Confidence            37899999999999999999998543     67777654322   233322111     111111 11122222222222


Q ss_pred             eeccCCh---HHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHH-HHhcCccccccccc-------cccCCCCCC
Q 024315          178 IACLISP---YRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK-LAREGKVKGFTGID-------DPYEPPLNC  246 (269)
Q Consensus       178 iv~~~~~---~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~-~~r~g~~~~~~~i~-------~~~e~p~~~  246 (269)
                      + ..+.+   .......++    +..+ .||+++|.+.+.+|...+-.. .......  ...+.       ..|+   .+
T Consensus        75 i-~~g~g~vl~~~~~~~l~----~~~~-vv~L~~~~~~l~~Rl~~r~~rp~~~~~~~--~~~i~~~~~~r~~~y~---~a  143 (171)
T PRK13947         75 I-ATGGGVVLNPENVVQLR----KNGV-VICLKARPEVILRRVGKKKSRPLLMVGDP--EERIKELLKEREPFYD---FA  143 (171)
T ss_pred             E-ECCCCCcCCHHHHHHHH----hCCE-EEEEECCHHHHHHHhcCCCCCCCCCCCCh--HHHHHHHHHHHHHHHH---hc
Confidence            3 22221   112222222    2222 489999999998886432100 0000000  01111       1222   35


Q ss_pred             CeEEEcCCCcCHHHHHH-HHh-hc
Q 024315          247 EVGVHVWYRFELAETWR-ITK-WL  268 (269)
Q Consensus       247 e~~id~~~~~~~~~~~~-i~~-~~  268 (269)
                      +++|||+ ..+++++.. |.+ ||
T Consensus       144 d~~Idt~-~~~~~~i~~~I~~~~~  166 (171)
T PRK13947        144 DYTIDTG-DMTIDEVAEEIIKAYL  166 (171)
T ss_pred             CEEEECC-CCCHHHHHHHHHHHHH
Confidence            8999984 788888888 777 65

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=98.54  E-value=1.7e-07  Score=89.78  Aligned_cols=51  Identities=16%  Similarity=0.258  Sum_probs=42.1

Q ss_pred             eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315           90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (269)
Q Consensus        90 ~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~  142 (269)
                      .+.+.+++.+++|++++|+|+||||||||++  .+.+.++..+.|.++|.++.
T Consensus        20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~   70 (504)
T TIGR03238        20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSF   70 (504)
T ss_pred             HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECC
Confidence            3467889999999999999999999999999  45554443448999998886

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=98.52  E-value=1.8e-07  Score=89.90  Aligned_cols=142  Identities=15%  Similarity=0.161  Sum_probs=86.7

Q ss_pred             eEEeeCceeeccC------cceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccc----cCCCC
Q 024315           82 ILWHKNSVDKRDR------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN----RDLSF  151 (269)
Q Consensus        82 ~~~~~~~v~~~~r------~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~----~~~g~  151 (269)
                      +.+.+..|.+.++      .+|-+..+..++++||||+|||||++.+.+.+. |..|.+.-.........+    -.+++
T Consensus       390 i~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~-p~~G~vs~~~H~~~~~y~Qh~~e~ldl  468 (614)
T KOG0927|consen  390 IMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ-PTIGMVSRHSHNKLPRYNQHLAEQLDL  468 (614)
T ss_pred             EEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc-cccccccccccccchhhhhhhHhhcCc
Confidence            3444445544433      467889999999999999999999999999985 556666554443321111    11122


Q ss_pred             ChhhH---HHH---HHHHHHHHHHHHhCCcce-----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChh
Q 024315          152 KAEDR---VEN---IRRIGEVAKLFADAGVIC-----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPK  219 (269)
Q Consensus       152 ~~~~~---~~~---~~~l~~~a~~~~~~g~~~-----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k  219 (269)
                      .....   .+.   ..+..++-.++..+|+..     -+..++.+++.| ..++.++.+|.+  +++|+|++.++-..-.
T Consensus       469 ~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~l--LlLDEPtnhLDi~tid  546 (614)
T KOG0927|consen  469 DKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHL--LLLDEPTNHLDIETID  546 (614)
T ss_pred             chhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcE--EEecCCCcCCCchhHH
Confidence            21111   000   012233444555666632     123345555555 477778888888  8999999999877766


Q ss_pred             hHHHHHh
Q 024315          220 GLYKLAR  226 (269)
Q Consensus       220 ~l~~~~r  226 (269)
                      .+.+.+.
T Consensus       547 ~laeaiN  553 (614)
T KOG0927|consen  547 ALAEAIN  553 (614)
T ss_pred             HHHHHHh
Confidence            6665554

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=98.52  E-value=5.1e-07  Score=77.90  Aligned_cols=126  Identities=17%  Similarity=0.187  Sum_probs=67.1

Q ss_pred             ccCcceecCCCeEEEEEcCCCChHHHHHHHHH----HhhccCCccEEEECCeecCcc-cccCCCCChhhH----------
Q 024315           92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALS----QALHWRGKLTYILDGDNCRHG-LNRDLSFKAEDR----------  156 (269)
Q Consensus        92 ~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~----~~l~~~~~g~i~l~g~~~~~~-l~~~~g~~~~~~----------  156 (269)
                      .+...+.+.+| +++|+|+||||||||+++|.    +..+ ++.+.+..+.+.+... ....+++..+..          
T Consensus        13 ~~~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~-~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~   90 (204)
T cd03240          13 HERSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELP-PNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRS   90 (204)
T ss_pred             cCceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCC-cccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEE
Confidence            44555667777 99999999999999999996    4432 2223222111111110 000000000000          


Q ss_pred             HHHHHHH-----HHHHHHHHhCCcceeeccCChHHHHH-------HHHHHhCCCCCccEEEEeCChhHHHhcChh-hHHH
Q 024315          157 VENIRRI-----GEVAKLFADAGVICIACLISPYRKDR-------DACRSMLPEGDFIEVFMDVPLQVCEARDPK-GLYK  223 (269)
Q Consensus       157 ~~~~~~l-----~~~a~~~~~~g~~~iv~~~~~~~~~r-------~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k-~l~~  223 (269)
                      ...+..+     .++...+     ...+...+.+++++       ..+++++.++++  +++|+|+..++....+ .+.+
T Consensus        91 ~~~~~~~~~~~~~~~~~~~-----~~~~~~LS~G~~~~~~la~rlala~al~~~p~i--lllDEP~~~LD~~~~~~~l~~  163 (204)
T cd03240          91 LAILENVIFCHQGESNWPL-----LDMRGRCSGGEKVLASLIIRLALAETFGSNCGI--LALDEPTTNLDEENIEESLAE  163 (204)
T ss_pred             hhHhhceeeechHHHHHHH-----hcCccccCccHHHHHHHHHHHHHHHHhccCCCE--EEEcCCccccCHHHHHHHHHH
Confidence            0000000     0111111     11222344555553       467888888888  9999999999998888 7666


Q ss_pred             HHh
Q 024315          224 LAR  226 (269)
Q Consensus       224 ~~r  226 (269)
                      .++
T Consensus       164 ~l~  166 (204)
T cd03240         164 IIE  166 (204)
T ss_pred             HHH
Confidence            554

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=98.51  E-value=1.3e-06  Score=81.04  Aligned_cols=39  Identities=36%  Similarity=0.423  Sum_probs=33.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhc-cCCccEEEECCeecC
Q 024315          104 VIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDNCR  142 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~-~~~~g~i~l~g~~~~  142 (269)
                      +..|+|++||||||+++.|+..+. ..|....+++.|+.-
T Consensus         1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i   40 (340)
T TIGR03575         1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDII   40 (340)
T ss_pred             CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccc
Confidence            357999999999999999998885 467778889998864

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.50  E-value=1e-07  Score=84.52  Aligned_cols=45  Identities=4%  Similarity=0.028  Sum_probs=32.9

Q ss_pred             cCChHHHHH-HHHHHhC----CCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          181 LISPYRKDR-DACRSML----PEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       181 ~~~~~~~~r-~~ar~ll----~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      ..+.+++++ ..+++++    ..+++  +++|||+..++....+.+.+.+++
T Consensus       166 ~lS~G~~qr~~la~al~~~~~~~~~i--lllDEPt~~ld~~~~~~~~~~l~~  215 (251)
T cd03273         166 ELSGGQRSLVALSLILALLLFKPAPM--YILDEVDAALDLSHTQNIGRMIKT  215 (251)
T ss_pred             ccCHHHHHHHHHHHHHHHhhccCCCE--EEEeCCCcCCCHHHHHHHHHHHHH
Confidence            345566665 5666664    45677  899999999999888887766654

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PRK06761 hypothetical protein; Provisional

Probab=98.50  E-value=6.1e-07  Score=81.13  Aligned_cols=118  Identities=17%  Similarity=0.179  Sum_probs=78.0

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHhhccCCcc-EEEECCee-cCcccccCCCCChhhHHHHHHHHHHHHHHHHh----CCc
Q 024315          102 GCVIWITGLSGSGKSTLACALSQALHWRGKL-TYILDGDN-CRHGLNRDLSFKAEDRVENIRRIGEVAKLFAD----AGV  175 (269)
Q Consensus       102 g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g-~i~l~g~~-~~~~l~~~~g~~~~~~~~~~~~l~~~a~~~~~----~g~  175 (269)
                      +.+++|.|++||||||+++.|...+...+-. .+..+++. ....+.....++..++..++++....+..+..    .|.
T Consensus         3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~~~p~d~~~~~~~~~eer~~~l~~~~~f~~~l~~~~~~~g~   82 (282)
T PRK06761          3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNLDHPADYDGVACFTKEEFDRLLSNYPDFKEVLLKNVLKKGD   82 (282)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCCCCchhhccccCCCHHHHHHHHHhhhHHHHHHHHHHHHcCC
Confidence            4689999999999999999999988644322 23445543 22234445568888888888887776654444    344


Q ss_pred             ceeeccCChHHHHHHHHHH-hCCCCCccEEEEeCChhHHHhcChhh
Q 024315          176 ICIACLISPYRKDRDACRS-MLPEGDFIEVFMDVPLQVCEARDPKG  220 (269)
Q Consensus       176 ~~iv~~~~~~~~~r~~ar~-ll~~~~~~~i~ld~p~~~l~~R~~k~  220 (269)
                      .+++.+.......|+.++. ++......+++ +.|.+...+|..++
T Consensus        83 ~~i~~~~~l~~~yr~~~~~~~~~~~~v~~~h-~~p~e~i~~R~~~r  127 (282)
T PRK06761         83 YYLLPYRKIKNEFGDQFSDELFNDISKNDIY-ELPFDKNTELITDR  127 (282)
T ss_pred             eEEEEehhhhHHHhhhhhhhhcccceeeeee-cCCHHHHHHHHHHH
Confidence            5566666655566666654 33333344466 99999998887554

>PRK14527 adenylate kinase; Provisional

Probab=98.49  E-value=5.3e-07  Score=76.68  Aligned_cols=30  Identities=40%  Similarity=0.438  Sum_probs=26.4

Q ss_pred             ecCCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315           98 LQQKGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus        98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      ...+|.+++++|++||||||+++.|+..+.
T Consensus         2 ~~~~~~~i~i~G~pGsGKsT~a~~La~~~~   31 (191)
T PRK14527          2 TQTKNKVVIFLGPPGAGKGTQAERLAQELG   31 (191)
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            345789999999999999999999998774

>PRK13946 shikimate kinase; Provisional

Probab=98.47  E-value=8.3e-07  Score=75.17  Aligned_cols=153  Identities=18%  Similarity=0.171  Sum_probs=77.8

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHH-----HHHHHH-HHHHHHHHhCCc
Q 024315          102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRV-----ENIRRI-GEVAKLFADAGV  175 (269)
Q Consensus       102 g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~-----~~~~~l-~~~a~~~~~~g~  175 (269)
                      ...|.++|.+||||||+++.|+..|.-+     ++|.|.......   +.+..+..     ..++.+ .+....+...+.
T Consensus        10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~-----~id~D~~~~~~~---g~~~~e~~~~~ge~~~~~~e~~~l~~l~~~~~   81 (184)
T PRK13946         10 KRTVVLVGLMGAGKSTVGRRLATMLGLP-----FLDADTEIERAA---RMTIAEIFAAYGEPEFRDLERRVIARLLKGGP   81 (184)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCCC-----eECcCHHHHHHh---CCCHHHHHHHHCHHHHHHHHHHHHHHHHhcCC
Confidence            4579999999999999999999988533     677775432211   22222211     111111 111222222332


Q ss_pred             ceeeccCC--hHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHH-HHhcCc-cccccccccccC-CCCCCCeEE
Q 024315          176 ICIACLIS--PYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK-LAREGK-VKGFTGIDDPYE-PPLNCEVGV  250 (269)
Q Consensus       176 ~~iv~~~~--~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~-~~r~g~-~~~~~~i~~~~e-~p~~~e~~i  250 (269)
                      .++...++  ..+..++.++.    .. +.||++.|++.+.+|..++-.. ...... ...+..++...+ -...++++|
T Consensus        82 ~Vi~~ggg~~~~~~~r~~l~~----~~-~~v~L~a~~e~~~~Rl~~r~~rp~~~~~~~~~~i~~~~~~R~~~y~~~dl~i  156 (184)
T PRK13946         82 LVLATGGGAFMNEETRAAIAE----KG-ISVWLKADLDVLWERVSRRDTRPLLRTADPKETLARLMEERYPVYAEADLTV  156 (184)
T ss_pred             eEEECCCCCcCCHHHHHHHHc----CC-EEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHHHHHHhCCEEE
Confidence            33332111  22334444432    22 3489999999998887543100 000000 011111111111 112368999


Q ss_pred             EcCCCcCHHHHHH-HHhhc
Q 024315          251 HVWYRFELAETWR-ITKWL  268 (269)
Q Consensus       251 d~~~~~~~~~~~~-i~~~~  268 (269)
                      +++ ..+++++.. |.+++
T Consensus       157 ~~~-~~~~~~~~~~i~~~i  174 (184)
T PRK13946        157 ASR-DVPKEVMADEVIEAL  174 (184)
T ss_pred             ECC-CCCHHHHHHHHHHHH
Confidence            984 788888887 66554

>TIGR00017 cmk cytidylate kinase

Probab=98.46  E-value=2.7e-06  Score=74.18  Aligned_cols=25  Identities=48%  Similarity=0.612  Sum_probs=22.6

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          103 CVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      -+++|.||+||||||+++.|++.+.
T Consensus         3 ~~i~i~G~~GsGKst~~~~la~~~~   27 (217)
T TIGR00017         3 MIIAIDGPSGAGKSTVAKAVAEKLG   27 (217)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3689999999999999999998775

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=98.45  E-value=1.8e-07  Score=80.96  Aligned_cols=27  Identities=37%  Similarity=0.500  Sum_probs=24.1

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      +|++++|+|+||||||||+++|...+.
T Consensus        27 ~~~~~~i~G~NGsGKSTll~~i~~~l~   53 (213)
T cd03279          27 NNGLFLICGPTGAGKSTILDAITYALY   53 (213)
T ss_pred             ccCEEEEECCCCCCHHHHHHHheeeEe
Confidence            478999999999999999999996553

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>PRK00300 gmk guanylate kinase; Provisional

Probab=98.43  E-value=2.2e-06  Score=73.31  Aligned_cols=29  Identities=41%  Similarity=0.531  Sum_probs=26.6

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      .++|++++|+||||||||||++.|++.++
T Consensus         2 ~~~g~~i~i~G~sGsGKstl~~~l~~~~~   30 (205)
T PRK00300          2 MRRGLLIVLSGPSGAGKSTLVKALLERDP   30 (205)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            36899999999999999999999999874

>PRK14532 adenylate kinase; Provisional

Probab=98.42  E-value=7.1e-07  Score=75.47  Aligned_cols=32  Identities=22%  Similarity=0.200  Sum_probs=25.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee
Q 024315          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~  140 (269)
                      .++|+|++||||||+++.|+..+.     ...++-++
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~~~g-----~~~is~~d   33 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVEERG-----MVQLSTGD   33 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC-----CeEEeCcH
Confidence            378999999999999999998774     34555533

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=98.42  E-value=1e-06  Score=84.94  Aligned_cols=133  Identities=24%  Similarity=0.326  Sum_probs=91.8

Q ss_pred             ccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-----ccccCCCCChhhHH---------
Q 024315           92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----GLNRDLSFKAEDRV---------  157 (269)
Q Consensus        92 ~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-----~l~~~~g~~~~~~~---------  157 (269)
                      ..++||++++||+++|.|.-|||+|-+++.|.+.- ....|+|.++|..+..     .++..++|.+++|.         
T Consensus       275 ~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~-~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~s  353 (500)
T COG1129         275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGAR-PASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMS  353 (500)
T ss_pred             eeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCC-cCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCc
Confidence            46789999999999999999999999999999944 5568999999997652     23334555555542         


Q ss_pred             --HHH-----HH-----------HHHHH-HHHHhCCc-----ceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhH
Q 024315          158 --ENI-----RR-----------IGEVA-KLFADAGV-----ICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV  212 (269)
Q Consensus       158 --~~~-----~~-----------l~~~a-~~~~~~g~-----~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~  212 (269)
                        +++     .+           -.+.+ .......+     ...+..+|++.+|+ -.+|.+..++++  +++|+|+-.
T Consensus       354 I~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~v--LilDEPTRG  431 (500)
T COG1129         354 IAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKV--LILDEPTRG  431 (500)
T ss_pred             HHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCE--EEECCCCcC
Confidence              110     00           00111 11112222     12244456666666 588888889999  999999999


Q ss_pred             HHhcChhhHHHHHhc
Q 024315          213 CEARDPKGLYKLARE  227 (269)
Q Consensus       213 l~~R~~k~l~~~~r~  227 (269)
                      ++--....+|+.+++
T Consensus       432 IDVGAK~eIy~li~~  446 (500)
T COG1129         432 IDVGAKAEIYRLIRE  446 (500)
T ss_pred             cccchHHHHHHHHHH
Confidence            998887778877663

>cd04095 CysN_NoDQ_III TCysN_NoDQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu

Probab=98.42  E-value=1.6e-07  Score=72.23  Aligned_cols=49  Identities=12%  Similarity=0.164  Sum_probs=44.4

Q ss_pred             CCCcccCCCcceeeeeeccccc--Cccccccccceeeccccccccccchhhhcccccccccc
Q 024315           12 TRPAICSPSLAEVDFRTSVKMS--GFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLC   71 (269)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~f~~idr~~~~~~~~~~~~~~~~~gagmi   71 (269)
                      .|..|..|++|.|+|.++.|+.  +|.+++.+|+|++|||.++.           |+|+||+
T Consensus        53 ~~~~l~~n~~a~v~i~~~~pi~~d~~~~~~~~GrfiliD~~~~~-----------tva~G~i  103 (103)
T cd04095          53 AADTLELNDIGRVELSLSKPLAFDPYRENRATGSFILIDRLTNA-----------TVGAGMI  103 (103)
T ss_pred             CCCEECCCCeEEEEEEeCCccEecchhhCCCcceEEEEECCCCc-----------EEEEEeC
Confidence            3456999999999999999998  99999999999999998886           8888875

Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which s

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=98.40  E-value=2e-06  Score=78.93  Aligned_cols=160  Identities=16%  Similarity=0.176  Sum_probs=82.3

Q ss_pred             cCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHH-----HHHHH--HH
Q 024315           93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE-----NIRRI--GE  165 (269)
Q Consensus        93 ~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~-----~~~~l--~~  165 (269)
                      .+....+.++..|+|+|++||||||+++.|+..+.-+     +++-|....   ...|++..+...     .++..  ..
T Consensus       124 ~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~-----~id~D~~i~---~~~G~~i~ei~~~~G~~~fr~~e~~~  195 (309)
T PRK08154        124 LGAGRRAARRRRIALIGLRGAGKSTLGRMLAARLGVP-----FVELNREIE---REAGLSVSEIFALYGQEGYRRLERRA  195 (309)
T ss_pred             HhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHcCCC-----EEeHHHHHH---HHhCCCHHHHHHHHCHHHHHHHHHHH
Confidence            3446778899999999999999999999999988533     444443321   112333332211     11111  11


Q ss_pred             HHHHHHhCCcceeeccCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHH--HHH-hcCccccccccc----c
Q 024315          166 VAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLY--KLA-REGKVKGFTGID----D  238 (269)
Q Consensus       166 ~a~~~~~~g~~~iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~--~~~-r~g~~~~~~~i~----~  238 (269)
                      +..++...+..++.. +.+.-........+..  .++.||+++|.+.+.+|..++..  ... .......+..++    .
T Consensus       196 l~~ll~~~~~~VI~~-Ggg~v~~~~~~~~l~~--~~~~V~L~a~~e~~~~Rl~~r~~~rp~~~~~~~~e~i~~~~~~R~~  272 (309)
T PRK08154        196 LERLIAEHEEMVLAT-GGGIVSEPATFDLLLS--HCYTVWLKASPEEHMARVRAQGDLRPMADNREAMEDLRRILASREP  272 (309)
T ss_pred             HHHHHhhCCCEEEEC-CCchhCCHHHHHHHHh--CCEEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHH
Confidence            222233333333333 3221111111112222  24569999999999888743210  000 000011111111    2


Q ss_pred             ccCCCCCCCeEEEcCCCcCHHHHHH-HHhh
Q 024315          239 PYEPPLNCEVGVHVWYRFELAETWR-ITKW  267 (269)
Q Consensus       239 ~~e~p~~~e~~id~~~~~~~~~~~~-i~~~  267 (269)
                      .|+   .++++|+|+ ..+++++.. |.++
T Consensus       273 ~y~---~ad~~I~t~-~~s~ee~~~~I~~~  298 (309)
T PRK08154        273 LYA---RADAVVDTS-GLTVAQSLARLREL  298 (309)
T ss_pred             HHH---hCCEEEECC-CCCHHHHHHHHHHH
Confidence            333   268999995 667887776 5554

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=98.38  E-value=1.3e-06  Score=84.03  Aligned_cols=48  Identities=23%  Similarity=0.204  Sum_probs=42.5

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      .++++.+.++....+..+.+.+|+.++|+|+|||||||+++++.+...
T Consensus        79 ~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~  126 (614)
T KOG0927|consen   79 ESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREV  126 (614)
T ss_pred             eeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCC
Confidence            456666677888888999999999999999999999999999998774

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=98.33  E-value=2.3e-07  Score=79.61  Aligned_cols=31  Identities=29%  Similarity=0.357  Sum_probs=27.0

Q ss_pred             ceecCCCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315           96 QLLQQKGCVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus        96 sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      ++.+.+|++++|+|+|||||||+++.|....
T Consensus        23 ~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~   53 (202)
T cd03243          23 DINLGSGRLLLITGPNMGGKSTYLRSIGLAV   53 (202)
T ss_pred             eEEEcCCeEEEEECCCCCccHHHHHHHHHHH
Confidence            5566788999999999999999999999544

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=98.32  E-value=4.4e-07  Score=75.49  Aligned_cols=147  Identities=17%  Similarity=0.213  Sum_probs=74.2

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHH-----HHHHHH-HHHHHHHHhCCcc
Q 024315          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRV-----ENIRRI-GEVAKLFADAGVI  176 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~-----~~~~~l-~~~a~~~~~~g~~  176 (269)
                      ..+.|+|++||||||+++.|+..+.-+     +++.|.+.....   +....+..     +.++.. .+....+.. +. 
T Consensus         3 ~~i~~~G~~GsGKst~~~~la~~lg~~-----~~d~D~~~~~~~---g~~~~~~~~~~g~~~~~~~e~~~~~~~~~-~~-   72 (171)
T PRK03731          3 QPLFLVGARGCGKTTVGMALAQALGYR-----FVDTDQWLQSTS---NMTVAEIVEREGWAGFRARESAALEAVTA-PS-   72 (171)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCC-----EEEccHHHHHHh---CCCHHHHHHHHCHHHHHHHHHHHHHHhcC-CC-
Confidence            358899999999999999999988533     677776643221   22211111     111111 111122222 22 


Q ss_pred             eeeccCCh---HHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHh---cC-c----ccc-ccccccccCCCC
Q 024315          177 CIACLISP---YRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR---EG-K----VKG-FTGIDDPYEPPL  244 (269)
Q Consensus       177 ~iv~~~~~---~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r---~g-~----~~~-~~~i~~~~e~p~  244 (269)
                      .++..+.+   ....++.+    ....+ .+|++.|.+.+.+|..++.....|   .+ .    ... +......|... 
T Consensus        73 ~vi~~ggg~vl~~~~~~~l----~~~~~-~v~l~~~~~~~~~Rl~~r~~~~~rp~~~~~~~~~~~~~~~~~r~~~y~~~-  146 (171)
T PRK03731         73 TVIATGGGIILTEENRHFM----RNNGI-VIYLCAPVSVLANRLEANPEEDQRPTLTGKPISEEVAEVLAEREALYREV-  146 (171)
T ss_pred             eEEECCCCccCCHHHHHHH----HhCCE-EEEEECCHHHHHHHHccccccccCCcCCCCChHHHHHHHHHHHHHHHHHh-
Confidence            23333322   12333333    22333 489999999998887542110000   00 0    001 11111234332 


Q ss_pred             CCCeEEEcCCCcCHHHHHH-HHhhc
Q 024315          245 NCEVGVHVWYRFELAETWR-ITKWL  268 (269)
Q Consensus       245 ~~e~~id~~~~~~~~~~~~-i~~~~  268 (269)
                       ..++||++  .++++++. |.++|
T Consensus       147 -a~~~Id~~--~~~e~v~~~i~~~l  168 (171)
T PRK03731        147 -AHHIIDAT--QPPSQVVSEILSAL  168 (171)
T ss_pred             -CCEEEcCC--CCHHHHHHHHHHHH
Confidence             45889874  67888877 66665

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=98.28  E-value=4.9e-06  Score=67.53  Aligned_cols=34  Identities=32%  Similarity=0.464  Sum_probs=27.7

Q ss_pred             EEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc
Q 024315          105 IWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH  143 (269)
Q Consensus       105 i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~  143 (269)
                      |+|+|++||||||+++.|+..+..+     +++.+.+..
T Consensus         2 i~l~G~~GsGKstla~~la~~l~~~-----~~~~d~~~~   35 (154)
T cd00464           2 IVLIGMMGAGKTTVGRLLAKALGLP-----FVDLDELIE   35 (154)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCC-----EEEchHHHH
Confidence            7899999999999999999988533     677776543

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=98.27  E-value=3.1e-05  Score=66.98  Aligned_cols=25  Identities=48%  Similarity=0.597  Sum_probs=23.3

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          103 CVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      -+|+|=||+||||||+++.|+..|.
T Consensus         5 ~~IAIDGPagsGKsTvak~lA~~Lg   29 (222)
T COG0283           5 IIIAIDGPAGSGKSTVAKILAEKLG   29 (222)
T ss_pred             eEEEEeCCCccChHHHHHHHHHHhC
Confidence            5789999999999999999999985

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=98.27  E-value=2.4e-06  Score=68.63  Aligned_cols=24  Identities=50%  Similarity=0.628  Sum_probs=22.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhc
Q 024315          104 VIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      +|.|+|++||||||+++.|+..+.
T Consensus         1 ~I~i~G~~GsGKst~a~~la~~~~   24 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAKKLG   24 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC
Confidence            478999999999999999999875

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=98.26  E-value=3.4e-06  Score=70.77  Aligned_cols=109  Identities=18%  Similarity=0.223  Sum_probs=56.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECC-eecCcccccCCCCCh--hhHH--------HHHHHHHHHHHHHHh
Q 024315          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDG-DNCRHGLNRDLSFKA--EDRV--------ENIRRIGEVAKLFAD  172 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g-~~~~~~l~~~~g~~~--~~~~--------~~~~~l~~~a~~~~~  172 (269)
                      +|+|+|++||||||+++.|+..+.     .+.++- +-+++.+........  ++..        +....+  +...+..
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~~-----~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l--l~~~~~~   73 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENFG-----FTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKL--LKNAIQA   73 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcC-----CeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHH--HHHHHhc
Confidence            478999999999999999999874     345553 444433321110000  0000        000000  0111111


Q ss_pred             C-CcceeeccCChHHHHHHHHHHhCC---CCCccEEEEeCChhHHHhcChhh
Q 024315          173 A-GVICIACLISPYRKDRDACRSMLP---EGDFIEVFMDVPLQVCEARDPKG  220 (269)
Q Consensus       173 ~-g~~~iv~~~~~~~~~r~~ar~ll~---~~~~~~i~ld~p~~~l~~R~~k~  220 (269)
                      . +...+++.......+...+.+++.   .+++ .+++++|.+.+.+|..++
T Consensus        74 ~~~~~~vlDg~p~~~~q~~~~~~~~~~~~~~d~-~i~l~~~~~~~~~Rl~~R  124 (183)
T TIGR01359        74 DGSKKFLIDGFPRNEENLEAWEKLMDNKVNFKF-VLFFDCPEEVMIKRLLKR  124 (183)
T ss_pred             cCCCcEEEeCCCCCHHHHHHHHHHHhcCCCCCE-EEEEECCHHHHHHHHhcC
Confidence            1 222333332222344444444443   3444 489999999999887554

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.23  E-value=1.2e-05  Score=68.97  Aligned_cols=45  Identities=16%  Similarity=0.043  Sum_probs=32.5

Q ss_pred             ccCChHHHHH-HHHHHh----CCCCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315          180 CLISPYRKDR-DACRSM----LPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       180 ~~~~~~~~~r-~~ar~l----l~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      ...+.+++++ ..++.+    +.++++  +++|||+..++......+.+.++
T Consensus       108 ~~lS~G~k~r~~ia~al~~~~~~~p~i--lllDEP~~glD~~~~~~~~~~l~  157 (198)
T cd03276         108 KTLSGGERSFSTVCLLLSLWEVMESPF--RCLDEFDVFMDMVNRKISTDLLV  157 (198)
T ss_pred             cccChhHHHHHHHHHHHHHhcccCCCE--EEecCcccccCHHHHHHHHHHHH
Confidence            3445555655 566666    478888  99999999999888777665443

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=98.23  E-value=3.7e-06  Score=72.67  Aligned_cols=81  Identities=22%  Similarity=0.241  Sum_probs=59.6

Q ss_pred             eCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCC---ccEEEECCeecCcccccCCCCChhhHHHHHHH
Q 024315           86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG---KLTYILDGDNCRHGLNRDLSFKAEDRVENIRR  162 (269)
Q Consensus        86 ~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~---~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~  162 (269)
                      .+.+.+.||+++++..||+-+++|.||||||-+|+++.+...+.=   ....+|+..++       +.+++.+|++.+.+
T Consensus        17 qG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idL-------L~L~Pr~RRk~ig~   89 (330)
T COG4170          17 QGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDL-------LRLSPRERRKLVGH   89 (330)
T ss_pred             CCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchh-------hcCChHHhhhhhcc
Confidence            367899999999999999999999999999999999999775320   11223333333       25777777776665


Q ss_pred             HHHHHHHHHhCCc
Q 024315          163 IGEVAKLFADAGV  175 (269)
Q Consensus       163 l~~~a~~~~~~g~  175 (269)
                        .++++|++...
T Consensus        90 --~isMIFQeP~s  100 (330)
T COG4170          90 --NVSMIFQEPQS  100 (330)
T ss_pred             --chhhhhcCchh
Confidence              67777776543

>PRK01184 hypothetical protein; Provisional

Probab=98.23  E-value=2.1e-05  Score=66.20  Aligned_cols=107  Identities=21%  Similarity=0.305  Sum_probs=54.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhccCCccEEEEC-CeecCcccc-cCCCCChhhHHH----HHHH-----HHHHH--HHH
Q 024315          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILD-GDNCRHGLN-RDLSFKAEDRVE----NIRR-----IGEVA--KLF  170 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~-g~~~~~~l~-~~~g~~~~~~~~----~~~~-----l~~~a--~~~  170 (269)
                      +++|+|++||||||+++ ++..+.     ..+++ |+-+++.+. ..+........+    ....     +....  .+.
T Consensus         3 ~i~l~G~~GsGKsT~a~-~~~~~g-----~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~   76 (184)
T PRK01184          3 IIGVVGMPGSGKGEFSK-IAREMG-----IPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRKELGMDAVAKRTVPKIR   76 (184)
T ss_pred             EEEEECCCCCCHHHHHH-HHHHcC-----CcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHChHHHHHHHHHHHH
Confidence            78999999999999987 444442     22444 555554331 111111111111    0001     00111  111


Q ss_pred             HhCCcceeeccCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcCh
Q 024315          171 ADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDP  218 (269)
Q Consensus       171 ~~~g~~~iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~  218 (269)
                      ...+..++++.. ....+.+.+++.+.. .+..|++++|.+.+.+|..
T Consensus        77 ~~~~~~vvidg~-r~~~e~~~~~~~~~~-~~~~i~v~~~~~~~~~Rl~  122 (184)
T PRK01184         77 EKGDEVVVIDGV-RGDAEVEYFRKEFPE-DFILIAIHAPPEVRFERLK  122 (184)
T ss_pred             hcCCCcEEEeCC-CCHHHHHHHHHhCCc-ccEEEEEECCHHHHHHHHH
Confidence            112233344433 233445566666653 3455899999999998864

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=98.23  E-value=1e-06  Score=75.59  Aligned_cols=31  Identities=23%  Similarity=0.224  Sum_probs=27.3

Q ss_pred             cCcceecCCC-eEEEEEcCCCChHHHHHHHHH
Q 024315           93 DRQQLLQQKG-CVIWITGLSGSGKSTLACALS  123 (269)
Q Consensus        93 ~r~sl~~~~g-~~i~l~G~sGsGKSTla~~L~  123 (269)
                      ...++.+.+| ++++|+||||||||||++.|.
T Consensus        18 ~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~   49 (200)
T cd03280          18 VPLDIQLGENKRVLVITGPNAGGKTVTLKTLG   49 (200)
T ss_pred             EcceEEECCCceEEEEECCCCCChHHHHHHHH
Confidence            3457888898 589999999999999999988

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>TIGR03263 guanyl_kin guanylate kinase

Probab=98.22  E-value=1.4e-05  Score=66.88  Aligned_cols=26  Identities=50%  Similarity=0.547  Sum_probs=23.9

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          102 GCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       102 g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      |++++|+||||||||||++.|++.++
T Consensus         1 g~ii~l~G~~GsGKsTl~~~L~~~~~   26 (180)
T TIGR03263         1 GLLIVISGPSGVGKSTLVKALLEEDP   26 (180)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHccCc
Confidence            68999999999999999999999764

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK07261 topology modulation protein; Provisional

Probab=98.22  E-value=5.9e-06  Score=69.28  Aligned_cols=99  Identities=27%  Similarity=0.269  Sum_probs=52.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHHHHHHHHHHHHHhCCcceeeccCC
Q 024315          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLIS  183 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~l~~~a~~~~~~g~~~iv~~~~  183 (269)
                      .|.|+|+||||||||++.|++.+..+   .+.+|...+..      ++......+....+   ...+....  .+++...
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~~~~~---~i~~D~~~~~~------~~~~~~~~~~~~~~---~~~~~~~~--wIidg~~   67 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQHYNCP---VLHLDTLHFQP------NWQERDDDDMIADI---SNFLLKHD--WIIDGNY   67 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCC---eEecCCEEecc------ccccCCHHHHHHHH---HHHHhCCC--EEEcCcc
Confidence            57899999999999999999887433   33333322211      12222222222222   22232222  2332221


Q ss_pred             hHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhH
Q 024315          184 PYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGL  221 (269)
Q Consensus       184 ~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l  221 (269)
                      ........+.    ..+. .+++|.|...|..|..++-
T Consensus        68 ~~~~~~~~l~----~ad~-vI~Ld~p~~~~~~R~lkR~  100 (171)
T PRK07261         68 SWCLYEERMQ----EADQ-IIFLNFSRFNCLYRAFKRY  100 (171)
T ss_pred             hhhhHHHHHH----HCCE-EEEEcCCHHHHHHHHHHHH
Confidence            1111111222    2223 3899999999999987664

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=98.22  E-value=2.4e-06  Score=73.47  Aligned_cols=30  Identities=33%  Similarity=0.305  Sum_probs=26.1

Q ss_pred             eecCCCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315           97 LLQQKGCVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus        97 l~~~~g~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      +.+..|++++|+||||||||||++.|.+..
T Consensus        20 i~l~~g~~~~ltGpNg~GKSTllr~i~~~~   49 (199)
T cd03283          20 IDMEKKNGILITGSNMSGKSTFLRTIGVNV   49 (199)
T ss_pred             EEEcCCcEEEEECCCCCChHHHHHHHHHHH
Confidence            445568999999999999999999999765

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>PRK08118 topology modulation protein; Reviewed

Probab=98.21  E-value=3.7e-06  Score=70.28  Aligned_cols=26  Identities=46%  Similarity=0.553  Sum_probs=23.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhccC
Q 024315          104 VIWITGLSGSGKSTLACALSQALHWR  129 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~~~  129 (269)
                      .|.|+|++||||||+++.|+..+..+
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~l~~~   28 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEKLNIP   28 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            47899999999999999999988643

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=98.21  E-value=2.6e-05  Score=79.26  Aligned_cols=25  Identities=40%  Similarity=0.551  Sum_probs=22.8

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          103 CVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      .+|+|.||+||||||+++.|++.+.
T Consensus         2 ~~i~I~G~~GsGKST~ak~la~~l~   26 (712)
T PRK09518          2 IIVAIDGPAGVGKSSVSRALAQYLG   26 (712)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3789999999999999999999973

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=98.21  E-value=2.8e-06  Score=71.20  Aligned_cols=105  Identities=25%  Similarity=0.343  Sum_probs=58.6

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHH-----HHHHHHH-HHHHHHHhCCcc
Q 024315          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRV-----ENIRRIG-EVAKLFADAGVI  176 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~-----~~~~~l~-~~a~~~~~~g~~  176 (269)
                      ..+.|+|+.||||||+.+.|++.|.-+     ++|.|.+-.   ...+++..+..     ..++... ++...+....- 
T Consensus         3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~-----F~D~D~~Ie---~~~g~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~~-   73 (172)
T COG0703           3 MNIVLIGFMGAGKSTIGRALAKALNLP-----FIDTDQEIE---KRTGMSIAEIFEEEGEEGFRRLETEVLKELLEEDN-   73 (172)
T ss_pred             ccEEEEcCCCCCHhHHHHHHHHHcCCC-----cccchHHHH---HHHCcCHHHHHHHHhHHHHHHHHHHHHHHHhhcCC-
Confidence            357899999999999999999999754     788776531   11133333221     1122221 22222222222 


Q ss_pred             eeeccCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcCh
Q 024315          177 CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDP  218 (269)
Q Consensus       177 ~iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~  218 (269)
                      .+++.+.+. -..+..++.+.... ..||+++|++.+.+|..
T Consensus        74 ~ViaTGGG~-v~~~enr~~l~~~g-~vv~L~~~~e~l~~Rl~  113 (172)
T COG0703          74 AVIATGGGA-VLSEENRNLLKKRG-IVVYLDAPFETLYERLQ  113 (172)
T ss_pred             eEEECCCcc-ccCHHHHHHHHhCC-eEEEEeCCHHHHHHHhc
Confidence            333333221 11222333444332 23899999999999986

>COG4639 Predicted kinase [General function prediction only]

Probab=98.21  E-value=3.4e-06  Score=69.34  Aligned_cols=107  Identities=25%  Similarity=0.250  Sum_probs=64.7

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhH----HHHHHHHHHHHHHHHhCCccee
Q 024315          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR----VENIRRIGEVAKLFADAGVICI  178 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~----~~~~~~l~~~a~~~~~~g~~~i  178 (269)
                      .+++++|++||||||+++....-.       ..++-++++..+..  ..+.+.-    ....+.+.+....-...|-..+
T Consensus         3 ~LvvL~G~~~sGKsT~ak~n~~~~-------~~lsld~~r~~lg~--~~~~e~sqk~~~~~~~~l~~~l~qrl~~Gk~ti   73 (168)
T COG4639           3 ILVVLRGASGSGKSTFAKENFLQN-------YVLSLDDLRLLLGV--SASKENSQKNDELVWDILYKQLEQRLRRGKFTI   73 (168)
T ss_pred             eEEEEecCCCCchhHHHHHhCCCc-------ceecHHHHHHHhhh--chhhhhccccHHHHHHHHHHHHHHHHHcCCeEE
Confidence            478999999999999998753211       24444444432210  0001100    0112222233333345677788


Q ss_pred             eccCChHHHHHHHHHHhCCCC--CccEEEEeCChhHHHhcCh
Q 024315          179 ACLISPYRKDRDACRSMLPEG--DFIEVFMDVPLQVCEARDP  218 (269)
Q Consensus       179 v~~~~~~~~~r~~ar~ll~~~--~~~~i~ld~p~~~l~~R~~  218 (269)
                      ++.....+++|.....+..+-  ....|++|.|.+.|.+|+.
T Consensus        74 idAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk  115 (168)
T COG4639          74 IDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNK  115 (168)
T ss_pred             EEcccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhh
Confidence            888777778888777777654  3345899999999999973

>PRK03839 putative kinase; Provisional

Probab=98.20  E-value=3.4e-06  Score=70.85  Aligned_cols=24  Identities=42%  Similarity=0.598  Sum_probs=22.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhc
Q 024315          104 VIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      .|.|+|++||||||+++.|++.+.
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~~   25 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKLG   25 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            588999999999999999999885

>PRK06547 hypothetical protein; Provisional

Probab=98.20  E-value=4.8e-06  Score=70.07  Aligned_cols=39  Identities=33%  Similarity=0.314  Sum_probs=29.6

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~  142 (269)
                      .....+|+|.|++||||||+++.|+..+.     ...++.|+..
T Consensus        12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~-----~~~~~~d~~~   50 (172)
T PRK06547         12 GGGMITVLIDGRSGSGKTTLAGALAARTG-----FQLVHLDDLY   50 (172)
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHHHHhC-----CCeeccccee
Confidence            35566899999999999999999998763     2355555553

>PRK00698 tmk thymidylate kinase; Validated

Probab=98.20  E-value=5.9e-06  Score=70.34  Aligned_cols=35  Identities=34%  Similarity=0.490  Sum_probs=28.4

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEE
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYI  135 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~  135 (269)
                      +|.+|+|.|+.||||||+++.|+..+...+.+.+.
T Consensus         2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~   36 (205)
T PRK00698          2 RGMFITIEGIDGAGKSTQIELLKELLEQQGRDVVF   36 (205)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeE
Confidence            47899999999999999999999988544444333

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=98.19  E-value=6.6e-06  Score=68.97  Aligned_cols=25  Identities=32%  Similarity=0.436  Sum_probs=22.6

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHhh
Q 024315          102 GCVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       102 g~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      ..+++|+|++||||||+++.|+..+
T Consensus         3 ~~ii~i~G~~GsGKsTl~~~l~~~~   27 (188)
T TIGR01360         3 CKIIFIVGGPGSGKGTQCEKIVEKY   27 (188)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            4589999999999999999999766

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK06217 hypothetical protein; Validated

Probab=98.19  E-value=1.6e-05  Score=67.14  Aligned_cols=34  Identities=47%  Similarity=0.576  Sum_probs=27.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~  142 (269)
                      .|+|+|.+||||||+++.|+..+.-+     +++.|++.
T Consensus         3 ~I~i~G~~GsGKSTla~~L~~~l~~~-----~~~~D~~~   36 (183)
T PRK06217          3 RIHITGASGSGTTTLGAALAERLDIP-----HLDTDDYF   36 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCc-----EEEcCcee
Confidence            48999999999999999999988533     55555554

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=98.17  E-value=6e-06  Score=69.46  Aligned_cols=33  Identities=33%  Similarity=0.472  Sum_probs=26.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhccCCccEEEE
Q 024315          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYIL  136 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l  136 (269)
                      +|+|.|++||||||+++.|++.+...|...+.+
T Consensus         2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~   34 (200)
T cd01672           2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVLT   34 (200)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence            689999999999999999999996544444444

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.16  E-value=1.6e-05  Score=70.45  Aligned_cols=43  Identities=14%  Similarity=0.028  Sum_probs=30.6

Q ss_pred             ChHHHHH-HHHHHhCC----CCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          183 SPYRKDR-DACRSMLP----EGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       183 ~~~~~~r-~~ar~ll~----~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      +++++++ ..++.++.    .+++  +++|+|+..++......+++.+++
T Consensus       157 S~G~k~rl~la~al~~~~~~~p~~--lllDEPt~~LD~~~~~~l~~~i~~  204 (247)
T cd03275         157 SGGEKTMAALALLFAIHSYQPAPF--FVLDEVDAALDNTNVGKVASYIRE  204 (247)
T ss_pred             CHHHHHHHHHHHHHHHhccCCCCE--EEEecccccCCHHHHHHHHHHHHH
Confidence            4455555 56676654    3677  899999999999887777665554

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>PLN02199 shikimate kinase

Probab=98.15  E-value=2.3e-06  Score=77.64  Aligned_cols=108  Identities=18%  Similarity=0.236  Sum_probs=59.8

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHH-----HHHHH-HHHHHHHHhCC
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE-----NIRRI-GEVAKLFADAG  174 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~-----~~~~l-~~~a~~~~~~g  174 (269)
                      +|..|.|+|.+||||||+++.|+..+.-+     ++|-|.+.+....  +.+..+..+     .++.. .++...+....
T Consensus       101 ~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~-----fIDtD~lIe~~~~--G~sI~eIf~~~GE~~FR~~E~e~L~~L~~~~  173 (303)
T PLN02199        101 NGRSMYLVGMMGSGKTTVGKLMSKVLGYT-----FFDCDTLIEQAMN--GTSVAEIFVHHGENFFRGKETDALKKLSSRY  173 (303)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCC-----EEehHHHHHHHhc--CCCHHHHHHHhCHHHHHHHHHHHHHHHHhcC
Confidence            48899999999999999999999987533     7777765432211  222222111     11111 11111122212


Q ss_pred             cceeeccCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChh
Q 024315          175 VICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPK  219 (269)
Q Consensus       175 ~~~iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k  219 (269)
                       ..+++.+.+. -.+...+.++.. .+ .||++.|++.+.+|..+
T Consensus       174 -~~VIStGGG~-V~~~~n~~~L~~-G~-vV~Ldas~E~l~~RL~~  214 (303)
T PLN02199        174 -QVVVSTGGGA-VIRPINWKYMHK-GI-SIWLDVPLEALAHRIAA  214 (303)
T ss_pred             -CEEEECCCcc-cCCHHHHHHHhC-Ce-EEEEECCHHHHHHHHhh
Confidence             2344444322 222233334444 33 38999999999998753

>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]

Probab=98.12  E-value=1.5e-05  Score=76.79  Aligned_cols=146  Identities=14%  Similarity=0.145  Sum_probs=89.7

Q ss_pred             ceEEeeCceee------ccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEE---------EECCeecCc--
Q 024315           81 NILWHKNSVDK------RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTY---------ILDGDNCRH--  143 (269)
Q Consensus        81 ~~~~~~~~v~~------~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i---------~l~g~~~~~--  143 (269)
                      .+.+++.++-.      ..+.+|.+.+|--+.|+||||||||+|.+.|.|+-+- -.|..         ++-..+...  
T Consensus       481 gI~lenIpvItP~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPv-y~g~L~~P~~~~mFYIPQRPYms~g  559 (728)
T KOG0064|consen  481 GIILENIPVITPAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPV-YNGLLSIPRPNNIFYIPQRPYMSGG  559 (728)
T ss_pred             ceEEecCceeccCcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcc-cCCeeecCCCcceEeccCCCccCcC
Confidence            35555544332      2445899999999999999999999999999997642 11211         111111100  


Q ss_pred             cccc------------CCCCChhhHHHHHHHHHHHHHHHHhCCcceee----ccCChHHHHH-HHHHHhCCCCCccEEEE
Q 024315          144 GLNR------------DLSFKAEDRVENIRRIGEVAKLFADAGVICIA----CLISPYRKDR-DACRSMLPEGDFIEVFM  206 (269)
Q Consensus       144 ~l~~------------~~g~~~~~~~~~~~~l~~~a~~~~~~g~~~iv----~~~~~~~~~r-~~ar~ll~~~~~~~i~l  206 (269)
                      .++.            +-|+.+++....+.. .....+++..+-.+.+    +.++++++|| ..+|-....|++  ..+
T Consensus       560 tlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~-v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPky--alL  636 (728)
T KOG0064|consen  560 TLRDQIIYPDSSEQMKRKGYTDQDLEAILDI-VHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKY--ALL  636 (728)
T ss_pred             cccceeecCCcHHHHHhcCCCHHHHHHHHHH-hhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcch--hhh
Confidence            1111            225666665443332 2344556655533322    2346677777 577777788888  778


Q ss_pred             eCChhHHHhcChhhHHHHHhcCcc
Q 024315          207 DVPLQVCEARDPKGLYKLAREGKV  230 (269)
Q Consensus       207 d~p~~~l~~R~~k~l~~~~r~g~~  230 (269)
                      |+-+..+.-.....+|+.+++..+
T Consensus       637 DEcTsAvsidvE~~i~~~ak~~gi  660 (728)
T KOG0064|consen  637 DECTSAVSIDVEGKIFQAAKDAGI  660 (728)
T ss_pred             hhhhcccccchHHHHHHHHHhcCc
Confidence            887777776666778888877665

>TIGR00235 udk uridine kinase

Probab=98.11  E-value=3.2e-06  Score=72.79  Aligned_cols=30  Identities=43%  Similarity=0.513  Sum_probs=27.2

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHHhhcc
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQALHW  128 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~  128 (269)
                      -++|++++|+|+||||||||++.|.+.+..
T Consensus         3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~   32 (207)
T TIGR00235         3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGK   32 (207)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            367999999999999999999999998853

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=98.10  E-value=3.2e-06  Score=71.71  Aligned_cols=43  Identities=28%  Similarity=0.276  Sum_probs=36.9

Q ss_pred             ceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCe
Q 024315           96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD  139 (269)
Q Consensus        96 sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~  139 (269)
                      .+.++.|+.++|+|+|||||||++++|.+.++ +..+.+.+.+.
T Consensus        19 ~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~-~~~~~i~ied~   61 (186)
T cd01130          19 WLAVEARKNILISGGTGSGKTTLLNALLAFIP-PDERIITIEDT   61 (186)
T ss_pred             HHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC-CCCCEEEECCc
Confidence            45678999999999999999999999999885 56778887653

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=98.09  E-value=2.5e-05  Score=81.25  Aligned_cols=42  Identities=26%  Similarity=0.261  Sum_probs=33.2

Q ss_pred             eEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHH
Q 024315           82 ILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALS  123 (269)
Q Consensus        82 ~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~  123 (269)
                      +++.+......+.+++.++.|++++|+|+||||||||++.+.
T Consensus       615 L~v~~l~~~~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~l  656 (943)
T PRK00349        615 LKLKGARENNLKNVDVEIPLGKFTCVTGVSGSGKSTLINETL  656 (943)
T ss_pred             EEecCCccCCcCceEEEEeCCCEEEEEcCCCCCHHHHHHHHH
Confidence            344433333467789999999999999999999999998763

>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=98.09  E-value=7.4e-06  Score=80.67  Aligned_cols=153  Identities=16%  Similarity=0.199  Sum_probs=82.4

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHH-----HHHHHHH-HHHH-HHHhCC
Q 024315          102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRV-----ENIRRIG-EVAK-LFADAG  174 (269)
Q Consensus       102 g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~-----~~~~~l~-~~a~-~~~~~g  174 (269)
                      -..+.|+|.+||||||+.+.|++.|.-+     ++|-|..-.   ...+.+..+..     +.++.+. +... +.... 
T Consensus         6 ~~~i~LiG~~GaGKttvg~~LA~~L~~~-----fiD~D~~ie---~~~g~si~eif~~~Ge~~FR~~E~~~l~~~~~~~-   76 (542)
T PRK14021          6 RPQAVIIGMMGAGKTRVGKEVAQMMRLP-----FADADVEIE---REIGMSIPSYFEEYGEPAFREVEADVVADMLEDF-   76 (542)
T ss_pred             CccEEEECCCCCCHHHHHHHHHHHhCCC-----EEEchHHHH---HHHCcCHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence            3468899999999999999999999644     777775421   11244433321     1122221 1111 22122 


Q ss_pred             cceeeccCCh---HHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhH-HHHHhc---Cccccccccc-cccCCCCCC
Q 024315          175 VICIACLISP---YRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGL-YKLARE---GKVKGFTGID-DPYEPPLNC  246 (269)
Q Consensus       175 ~~~iv~~~~~---~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l-~~~~r~---g~~~~~~~i~-~~~e~p~~~  246 (269)
                       ..+++.+.+   ..+.+..+.+.+.+..+ .||++.|++.+.+|....- ......   .++..+...+ ..|+.  .+
T Consensus        77 -~~VIs~GGG~v~~~~n~~~L~~~~~~~g~-vv~L~~~~~~l~~Rl~~~~~RPll~~~~~~~~~~l~~~R~~~Y~~--~A  152 (542)
T PRK14021         77 -DGIFSLGGGAPMTPSTQHALASYIAHGGR-VVYLDADPKEAMERANRGGGRPMLNGDANKRWKKLFKQRDPVFRQ--VA  152 (542)
T ss_pred             -CeEEECCCchhCCHHHHHHHHHHHhcCCE-EEEEECCHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHHHh--hC
Confidence             234444332   23455555555555443 3899999999999863210 000100   0111122222 23432  37


Q ss_pred             CeEEEcCCCcCHHHHHH-HHhhc
Q 024315          247 EVGVHVWYRFELAETWR-ITKWL  268 (269)
Q Consensus       247 e~~id~~~~~~~~~~~~-i~~~~  268 (269)
                      +++|+|+ ..+++++.. |.+.+
T Consensus       153 d~~i~~~-~~~~~~~~~~i~~~~  174 (542)
T PRK14021        153 NVHVHTR-GLTPQAAAKKLIDMV  174 (542)
T ss_pred             CEEEECC-CCCHHHHHHHHHHHH
Confidence            8999985 667777766 65543

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=98.08  E-value=1.8e-05  Score=74.91  Aligned_cols=123  Identities=23%  Similarity=0.198  Sum_probs=70.9

Q ss_pred             cCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhH----------HHHHHH
Q 024315           93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR----------VENIRR  162 (269)
Q Consensus        93 ~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~----------~~~~~~  162 (269)
                      ...+|-+.--..|+|+||||.|||||++.|.+.|. |..|..+-+.. ++      +|+-.+..          .+.+.+
T Consensus       604 kkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~-P~~GE~RKnhr-L~------iG~FdQh~~E~L~~Eetp~EyLqr  675 (807)
T KOG0066|consen  604 KKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD-PNDGELRKNHR-LR------IGWFDQHANEALNGEETPVEYLQR  675 (807)
T ss_pred             hcccccccccceeEEECCCCccHHHHHHHHhcCCC-CCcchhhccce-ee------eechhhhhHHhhccccCHHHHHHH
Confidence            44567777788899999999999999999999994 54444332211 11      11111100          111111


Q ss_pred             H----HHHH-HHHHhCCc------ceeeccCChHHHHHH-HHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315          163 I----GEVA-KLFADAGV------ICIACLISPYRKDRD-ACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       163 l----~~~a-~~~~~~g~------~~iv~~~~~~~~~r~-~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      .    .+.+ ..+..+|+      +.+- .++++++.|- .+.-.+..+++  +++|+|+..++-.....+..+++
T Consensus       676 ~FNlpyq~ARK~LG~fGL~sHAHTikik-dLSGGQKaRValaeLal~~PDv--lILDEPTNNLDIESIDALaEAIn  748 (807)
T KOG0066|consen  676 KFNLPYQEARKQLGTFGLASHAHTIKIK-DLSGGQKARVALAELALGGPDV--LILDEPTNNLDIESIDALAEAIN  748 (807)
T ss_pred             hcCCChHHHHHHhhhhhhhhccceEeee-ecCCcchHHHHHHHHhcCCCCE--EEecCCCCCcchhhHHHHHHHHH
Confidence            1    0111 11222222      2233 4456666664 44445666777  89999999998777666666655

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=98.07  E-value=1.7e-05  Score=75.33  Aligned_cols=121  Identities=17%  Similarity=0.129  Sum_probs=67.2

Q ss_pred             ecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-----ccccCCCCChhhHHHHHHHH-----HHHH
Q 024315           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----GLNRDLSFKAEDRVENIRRI-----GEVA  167 (269)
Q Consensus        98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-----~l~~~~g~~~~~~~~~~~~l-----~~~a  167 (269)
                      .+..||+++++||||-||||+++.|+|.+. |.+|.    ..++.-     -+..+..-+.++.......-     ....
T Consensus       363 ~i~~gEvigilGpNgiGKTTFvk~LAG~ik-Pdeg~----~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~  437 (591)
T COG1245         363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIK-PDEGS----EEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKT  437 (591)
T ss_pred             eeecceEEEEECCCCcchHHHHHHHhcccc-CCCCC----CccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHH
Confidence            456789999999999999999999999995 44443    111210     11111111122221111110     0011


Q ss_pred             HHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHH
Q 024315          168 KLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (269)
Q Consensus       168 ~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~  225 (269)
                      .++....+..    -+..+++++-|| .++.++..++++  -++|+|.+.|+-..+-...+.+
T Consensus       438 ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADl--YllDEPSA~LDvEqR~~vakvI  498 (591)
T COG1245         438 EIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADL--YLLDEPSAYLDVEQRIIVAKVI  498 (591)
T ss_pred             hhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCE--EEecCchhhccHHHHHHHHHHH
Confidence            1122222211    245567777777 577777777777  6889999998755443333333

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=98.06  E-value=1.4e-05  Score=71.90  Aligned_cols=39  Identities=26%  Similarity=0.215  Sum_probs=35.5

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~  142 (269)
                      ..++|+|+||||||||++.|++.+ .++.|.+.++|.++.
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~~~-~~~~G~i~~~g~~v~  150 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLARIL-STGISQLGLRGKKVG  150 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCcc-CCCCceEEECCEEee
Confidence            678999999999999999999988 477999999998875

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>PRK14530 adenylate kinase; Provisional

Probab=98.06  E-value=4e-05  Score=66.37  Aligned_cols=26  Identities=27%  Similarity=0.406  Sum_probs=23.4

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          102 GCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       102 g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      +..|+|+|++||||||+++.|++.+.
T Consensus         3 ~~~I~i~G~pGsGKsT~~~~La~~~~   28 (215)
T PRK14530          3 QPRILLLGAPGAGKGTQSSNLAEEFG   28 (215)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            44789999999999999999999884

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=98.06  E-value=1.3e-05  Score=75.39  Aligned_cols=140  Identities=17%  Similarity=0.195  Sum_probs=81.3

Q ss_pred             eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc-------CCccEEEECCeecCcccccCC--CCChhhHHHH
Q 024315           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW-------RGKLTYILDGDNCRHGLNRDL--SFKAEDRVEN  159 (269)
Q Consensus        89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~-------~~~g~i~l~g~~~~~~l~~~~--g~~~~~~~~~  159 (269)
                      ....+++++.+++|++++++|.|||||||+++.++|....       |.+|.+-+-.+.+...+-..+  .+......+.
T Consensus       396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tileh  475 (593)
T COG2401         396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEH  475 (593)
T ss_pred             eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHHH
Confidence            3345778999999999999999999999999999998753       345666655444332221111  2222222222


Q ss_pred             HHH----HHHHHHHHHhCCcceeec------cCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcCh----hhHHHH
Q 024315          160 IRR----IGEVAKLFADAGVICIAC------LISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDP----KGLYKL  224 (269)
Q Consensus       160 ~~~----l~~~a~~~~~~g~~~iv~------~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~----k~l~~~  224 (269)
                      +..    +.....++..+|+.+-+.      .++.+++.| .+++.+.+.+++  +..|+=-+.+++-..    +.+.+.
T Consensus       476 l~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~--~~iDEF~AhLD~~TA~rVArkisel  553 (593)
T COG2401         476 LRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNV--LLIDEFAAHLDELTAVRVARKISEL  553 (593)
T ss_pred             HhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCc--EEhhhhhhhcCHHHHHHHHHHHHHH
Confidence            211    122345566667654322      124445555 566666666677  566666555554443    334455


Q ss_pred             HhcCcc
Q 024315          225 AREGKV  230 (269)
Q Consensus       225 ~r~g~~  230 (269)
                      +|+..+
T Consensus       554 aRe~gi  559 (593)
T COG2401         554 AREAGI  559 (593)
T ss_pred             HHHhCC
Confidence            665554

>cd03705 EF1_alpha_III Domain III of EF-1

Probab=98.04  E-value=3.3e-06  Score=64.83  Aligned_cols=47  Identities=11%  Similarity=0.009  Sum_probs=41.5

Q ss_pred             CCCcccCCCcceeeeeeccccc--Cccccccccceeeccccccccccchhhhcccccccccc
Q 024315           12 TRPAICSPSLAEVDFRTSVKMS--GFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLC   71 (269)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~f~~idr~~~~~~~~~~~~~~~~~gagmi   71 (269)
                      .|..|..||+|.|+|.++.|++  +|.+++.+|+|+++|.  |.           |+|+||+
T Consensus        56 ~~~~l~~n~~a~v~l~~~~pi~~e~~~~~~~lgrf~lrd~--~~-----------Tva~G~v  104 (104)
T cd03705          56 NPKFLKSGDAAIVKIVPQKPLVVETFSEYPPLGRFAVRDM--GQ-----------TVAVGIV  104 (104)
T ss_pred             CcCccCCCCEEEEEEEECCeeEEEEcccCCCccCEEEEeC--CC-----------EEEEEEC
Confidence            3456899999999999999998  9999999999999983  54           8999985

Eukaryotic elongation factor 1 (EF-1) is responsible for the GTP-dependent binding of aminoacyl-tRNAs to ribosomes. EF-1 is composed of four subunits: the alpha chain, which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This family is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF-1 alpha) and eukaryotes (eEF-1 alpha).

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=98.03  E-value=7.2e-06  Score=67.99  Aligned_cols=105  Identities=21%  Similarity=0.130  Sum_probs=58.3

Q ss_pred             ceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCC-hhhHHHHHHHHHHHHHHHHhCC
Q 024315           96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFK-AEDRVENIRRIGEVAKLFADAG  174 (269)
Q Consensus        96 sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~-~~~~~~~~~~l~~~a~~~~~~g  174 (269)
                      +....++.++.|+|||||||||+++++.-.+........+  .....      .++. +......               
T Consensus        15 ~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~--~~~~~------~g~~~~~~~~~~---------------   71 (162)
T cd03227          15 DVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRR--RSGVK------AGCIVAAVSAEL---------------   71 (162)
T ss_pred             EEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhc--cCccc------CCCcceeeEEEE---------------
Confidence            3444556799999999999999999987666432211111  11111      0110 1000000               


Q ss_pred             cceeeccCChHHHHH-HHHHHhCC----CCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315          175 VICIACLISPYRKDR-DACRSMLP----EGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       175 ~~~iv~~~~~~~~~r-~~ar~ll~----~~~~~~i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      +..... .+.+++++ ..++.+..    .+++  +++|||...++......+.....
T Consensus        72 i~~~~~-lS~G~~~~~~la~~L~~~~~~~~~l--lllDEp~~gld~~~~~~l~~~l~  125 (162)
T cd03227          72 IFTRLQ-LSGGEKELSALALILALASLKPRPL--YILDEIDRGLDPRDGQALAEAIL  125 (162)
T ss_pred             ehheee-ccccHHHHHHHHHHHHhcCCCCCCE--EEEeCCCCCCCHHHHHHHHHHHH
Confidence            111111 23334444 45555543    4566  89999999999988777655443

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>PRK13808 adenylate kinase; Provisional

Probab=98.02  E-value=1.2e-05  Score=74.20  Aligned_cols=24  Identities=33%  Similarity=0.383  Sum_probs=21.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhc
Q 024315          104 VIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      .|+|+||+||||||+++.|+..+.
T Consensus         2 rIiv~GpPGSGK~T~a~~LA~~yg   25 (333)
T PRK13808          2 RLILLGPPGAGKGTQAQRLVQQYG   25 (333)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            378899999999999999999874

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=98.00  E-value=3.2e-05  Score=66.23  Aligned_cols=122  Identities=24%  Similarity=0.200  Sum_probs=59.7

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCC--------CCChhhHHHHHHHHHHHHHHHH
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDL--------SFKAEDRVENIRRIGEVAKLFA  171 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~--------g~~~~~~~~~~~~l~~~a~~~~  171 (269)
                      +.+.++.+.|+|||||||++..+...+.  ..+.+.++.|.++..+-...        ...............++.....
T Consensus        13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~~D~~r~~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~a~   90 (199)
T PF06414_consen   13 EKPTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVIDADEFRQFHPDYDELLKADPDEASELTQKEASRLAEKLIEYAI   90 (199)
T ss_dssp             SS-EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE-GGGGGGGSTTHHHHHHHHCCCTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEehHHHHHhccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            6788999999999999999999988763  46788999999874321000        0000000111111122222233


Q ss_pred             hCCcceeec--cCChHHHHHHHHHHhCCCC-CccEEEEeCChhHHHhcChhhHHHH
Q 024315          172 DAGVICIAC--LISPYRKDRDACRSMLPEG-DFIEVFMDVPLQVCEARDPKGLYKL  224 (269)
Q Consensus       172 ~~g~~~iv~--~~~~~~~~r~~ar~ll~~~-~~~~i~ld~p~~~l~~R~~k~l~~~  224 (269)
                      ..+...++.  +..+. .-+..++.+-... .+..+++.+|.+....|..++..+.
T Consensus        91 ~~~~nii~E~tl~~~~-~~~~~~~~~k~~GY~v~l~~v~~~~e~s~~rv~~R~~~~  145 (199)
T PF06414_consen   91 ENRYNIIFEGTLSNPS-KLRKLIREAKAAGYKVELYYVAVPPELSIERVRQRYEEG  145 (199)
T ss_dssp             HCT--EEEE--TTSSH-HHHHHHHHHHCTT-EEEEEEE---HHHHHHHHHHHHHHH
T ss_pred             HcCCCEEEecCCCChh-HHHHHHHHHHcCCceEEEEEEECCHHHHHHHHHHHHHcc
Confidence            444444433  33332 2222333332222 3444688999988888876665433

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.00  E-value=3.6e-05  Score=70.93  Aligned_cols=43  Identities=33%  Similarity=0.508  Sum_probs=33.8

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~  142 (269)
                      .+|.+++|+||||+||||++..|++.+...+..+.+++.|..+
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r  154 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR  154 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence            5789999999999999999999999986554445555555433

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=98.00  E-value=2.5e-05  Score=66.09  Aligned_cols=34  Identities=35%  Similarity=0.482  Sum_probs=28.1

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEE
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTY  134 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i  134 (269)
                      +|.+|+|.|+.||||||+++.|+..+...|...+
T Consensus         2 ~g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~   35 (195)
T TIGR00041         2 RGMFIVIEGIDGAGKTTQANLLKKLLQENGYDVL   35 (195)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence            3789999999999999999999999865443333

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=97.99  E-value=3.1e-05  Score=66.62  Aligned_cols=42  Identities=24%  Similarity=0.443  Sum_probs=33.4

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccc
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN  146 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~  146 (269)
                      .+.+++++|.+||||||+++.|+..+..    ...+.||-+++.++
T Consensus         2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~----~~~~~~D~~r~~~r   43 (197)
T PRK12339          2 ESTIHFIGGIPGVGKTSISGYIARHRAI----DIVLSGDYLREFLR   43 (197)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCC----eEEehhHHHHHHHH
Confidence            4678999999999999999999998732    35678887765444

>PRK00625 shikimate kinase; Provisional

Probab=97.97  E-value=2.1e-05  Score=66.19  Aligned_cols=33  Identities=30%  Similarity=0.513  Sum_probs=26.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~  141 (269)
                      .|.|+|.+||||||+++.|+..+.-+     ++|-|.+
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~l~~~-----~id~D~~   34 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKFLSLP-----FFDTDDL   34 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCC-----EEEhhHH
Confidence            47899999999999999999988533     5666654

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=97.96  E-value=4.5e-05  Score=66.24  Aligned_cols=43  Identities=12%  Similarity=0.062  Sum_probs=30.0

Q ss_pred             CChHHHHHHHHHH-----hCCCCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315          182 ISPYRKDRDACRS-----MLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       182 ~~~~~~~r~~ar~-----ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      .+.+++++..+..     ++.++++  +++|+|+..++....+.+++.++
T Consensus       127 LS~G~~q~~~i~~~la~~~~~~p~l--lllDEP~~~LD~~~~~~i~~~l~  174 (213)
T cd03277         127 QSGGERSVSTMLYLLSLQELTRCPF--RVVDEINQGMDPTNERKVFDMLV  174 (213)
T ss_pred             ccccHHHHHHHHHHHHHHhccCCCE--EEEecccccCCHHHHHHHHHHHH
Confidence            3445555543332     2567788  89999999999988888766554

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=97.95  E-value=5.9e-05  Score=63.58  Aligned_cols=23  Identities=39%  Similarity=0.479  Sum_probs=21.1

Q ss_pred             EEEEcCCCChHHHHHHHHHHhhc
Q 024315          105 IWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       105 i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      |+|+|++||||||+++.|+..+.
T Consensus         2 I~i~G~pGsGKst~a~~La~~~~   24 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAKKYG   24 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC
Confidence            78999999999999999999763

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=97.94  E-value=8.5e-05  Score=65.30  Aligned_cols=41  Identities=24%  Similarity=0.195  Sum_probs=31.5

Q ss_pred             ecCCCeEEEEEcCCCChHHHHH-HHHHHhhccCCccEEEECCe
Q 024315           98 LQQKGCVIWITGLSGSGKSTLA-CALSQALHWRGKLTYILDGD  139 (269)
Q Consensus        98 ~~~~g~~i~l~G~sGsGKSTla-~~L~~~l~~~~~g~i~l~g~  139 (269)
                      -+++|+++.|.|+|||||||++ +.+.+.+ .++...+++..+
T Consensus        20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~-~~g~~~~yi~~e   61 (230)
T PRK08533         20 GIPAGSLILIEGDESTGKSILSQRLAYGFL-QNGYSVSYVSTQ   61 (230)
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHH-hCCCcEEEEeCC
Confidence            3688999999999999999996 6666655 456666666643

>PRK00023 cmk cytidylate kinase; Provisional

Probab=97.93  E-value=0.00013  Score=64.04  Aligned_cols=26  Identities=46%  Similarity=0.558  Sum_probs=23.6

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          102 GCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       102 g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      ..+|+|.|++||||||+++.|++.+.
T Consensus         4 ~~~i~i~g~~gsGksti~~~la~~~~   29 (225)
T PRK00023          4 AIVIAIDGPAGSGKGTVAKILAKKLG   29 (225)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            46899999999999999999998884

>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]

Probab=97.93  E-value=0.00015  Score=60.00  Aligned_cols=159  Identities=19%  Similarity=0.184  Sum_probs=92.1

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCccc-----ccCCCCChh----------------hHH
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDLSFKAE----------------DRV  157 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l-----~~~~g~~~~----------------~~~  157 (269)
                      ..+|.++.|-|.+-||||+++.++......+   -..++-|.....+     ....+|+-.                -..
T Consensus        20 ~~~griVlLNG~~saGKSSiA~A~Q~~~a~p---wmhigiD~f~e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~gpi~   96 (205)
T COG3896          20 MPEGRIVLLNGGSSAGKSSIALAFQDLAAEP---WMHIGIDLFWEALPPEQLDLARGYTWDSAVEADGLEWVTVHPGPIL   96 (205)
T ss_pred             CCCceEEEecCCCccchhHHHHHHHHHhhcc---hhhhhHHHHHHhCCHHhhccccccccccccccCCceeeEeechhHH
Confidence            4689999999999999999999998865432   1122222111110     000111110                000


Q ss_pred             H-HHHHHHHHHHHHHhCCcceeeccCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCcccccc-c
Q 024315          158 E-NIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFT-G  235 (269)
Q Consensus       158 ~-~~~~l~~~a~~~~~~g~~~iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~-~  235 (269)
                      + .......-...+.+.|..++.+...-.+...--+...+...+++.|-+.+|.++++.|.      ..+.++..++. +
T Consensus        97 e~~~~~~r~ai~a~ad~G~~~i~Ddv~~~r~~L~Dc~r~l~g~~v~~VGV~~p~E~~~~Re------~rr~dR~pG~~rg  170 (205)
T COG3896          97 ELAMHSRRRAIRAYADNGMNVIADDVIWTREWLVDCLRVLEGCRVWMVGVHVPDEEGARRE------LRRGDRHPGWNRG  170 (205)
T ss_pred             HHHHHHHHHHHHHHhccCcceeehhcccchhhHHHHHHHHhCCceEEEEeeccHHHHHHHH------hhcCCcCcchhhh
Confidence            1 11111122234566776666655433333333333344545676688899999999886      33455555543 4


Q ss_pred             cccccCCCCCCCeEEEcCCCcCHHHHHH-HHhh
Q 024315          236 IDDPYEPPLNCEVGVHVWYRFELAETWR-ITKW  267 (269)
Q Consensus       236 i~~~~e~p~~~e~~id~~~~~~~~~~~~-i~~~  267 (269)
                      ....-+.|...|+.+||+ -+++.||.. |-|-
T Consensus       171 ~~r~vHa~~~YDlevDTS-~~tp~EcAr~i~~r  202 (205)
T COG3896         171 SARAVHADAEYDLEVDTS-ATTPHECAREIHER  202 (205)
T ss_pred             hHHHhcCCcceeeeeccc-CCCHHHHHHHHHHH
Confidence            445567888889999996 667888888 6553

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.92  E-value=1.5e-05  Score=68.54  Aligned_cols=40  Identities=33%  Similarity=0.439  Sum_probs=31.8

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~  141 (269)
                      +++.+|+|+|+||||||||++.|.+.+.  +.....++.|+.
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~--~~~~~~i~~D~~   43 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEELG--DESIAVIPQDSY   43 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhC--CCceEEEeCCcc
Confidence            5789999999999999999999999883  223445666554

>TIGR01351 adk adenylate kinases

Probab=97.90  E-value=5.1e-05  Score=65.43  Aligned_cols=105  Identities=17%  Similarity=0.136  Sum_probs=55.3

Q ss_pred             EEEEcCCCChHHHHHHHHHHhhccCCccEEEECC-eecCcccccCC-------------CCChhhHHHHHHHHHHHHHHH
Q 024315          105 IWITGLSGSGKSTLACALSQALHWRGKLTYILDG-DNCRHGLNRDL-------------SFKAEDRVENIRRIGEVAKLF  170 (269)
Q Consensus       105 i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g-~~~~~~l~~~~-------------g~~~~~~~~~~~~l~~~a~~~  170 (269)
                      |+|+|++||||||+++.|+..+.-     ..++- +-++..+....             .+.+.+.   +..  -+...+
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~g~-----~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~---~~~--l~~~~i   71 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKYGL-----PHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEI---VNQ--LVKERL   71 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCC-----CeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHH---HHH--HHHHHH
Confidence            679999999999999999987742     23443 33333222110             1111111   001  011111


Q ss_pred             Hh---CCcceeeccCChHHHHHHHHHHhCC-CCCccEEEEeCChhHHHhcChhh
Q 024315          171 AD---AGVICIACLISPYRKDRDACRSMLP-EGDFIEVFMDVPLQVCEARDPKG  220 (269)
Q Consensus       171 ~~---~g~~~iv~~~~~~~~~r~~ar~ll~-~~~~~~i~ld~p~~~l~~R~~k~  220 (269)
                      ..   .+...+++.......+.+.+.+.+. .+.+ .|++++|.+.+.+|...+
T Consensus        72 ~~~~~~~~~~ilDGfPrt~~Qa~~l~~~~~~~~~~-vi~L~~~~~~~~~Rl~~R  124 (210)
T TIGR01351        72 TQNQDNENGFILDGFPRTLSQAEALDALLKEKIDA-VIELDVPDEELVERLSGR  124 (210)
T ss_pred             hcCcccCCcEEEeCCCCCHHHHHHHHHHhccCCCE-EEEEECCHHHHHHHHHCC
Confidence            11   1122233322223344555666555 3443 489999999999887655

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=97.88  E-value=8.9e-06  Score=70.28  Aligned_cols=36  Identities=25%  Similarity=0.127  Sum_probs=31.3

Q ss_pred             eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315           91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus        91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      .....++....|++++|+||||+||||+++.+.+..
T Consensus        18 v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~   53 (204)
T cd03282          18 IPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA   53 (204)
T ss_pred             EEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            456667888899999999999999999999998654

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK02496 adk adenylate kinase; Provisional

Probab=97.86  E-value=6.7e-05  Score=63.17  Aligned_cols=24  Identities=38%  Similarity=0.566  Sum_probs=21.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhc
Q 024315          104 VIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      .++|+|++||||||+++.|++.+.
T Consensus         3 ~i~i~G~pGsGKst~a~~la~~~~   26 (184)
T PRK02496          3 RLIFLGPPGAGKGTQAVVLAEHLH   26 (184)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            478999999999999999999874

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.86  E-value=1.2e-05  Score=62.65  Aligned_cols=32  Identities=47%  Similarity=0.584  Sum_probs=25.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee
Q 024315          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~  140 (269)
                      +|+|+|++||||||+++.|+..+.     ...++.++
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~~-----~~~i~~d~   32 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERLG-----FPVISMDD   32 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHT-----CEEEEEHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHC-----CeEEEecc
Confidence            588999999999999999999874     23455555

...

>PRK14531 adenylate kinase; Provisional

Probab=97.86  E-value=9.3e-05  Score=62.49  Aligned_cols=24  Identities=33%  Similarity=0.398  Sum_probs=22.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhc
Q 024315          104 VIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      .++++|++||||||+++.|+..+.
T Consensus         4 ~i~i~G~pGsGKsT~~~~la~~~g   27 (183)
T PRK14531          4 RLLFLGPPGAGKGTQAARLCAAHG   27 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            588999999999999999999874

>cd04093 HBS1_C HBS1_C: this family represents the C-terminal domain of Hsp70 subfamily B suppressor 1 (HBS1) which is homologous to the domain III of EF-1alpha

Probab=97.85  E-value=1.1e-05  Score=62.19  Aligned_cols=47  Identities=11%  Similarity=0.051  Sum_probs=42.1

Q ss_pred             CCcccCCCcceeeeeeccccc--Cccccccccceeeccccccccccchhhhccccccccccc
Q 024315           13 RPAICSPSLAEVDFRTSVKMS--GFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQ   72 (269)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~f~~idr~~~~~~~~~~~~~~~~~gagmi~   72 (269)
                      |..|..||+|.|+|.++.|++  +|.+++.+|+|++  |-++.           |+|+|||.
T Consensus        57 ~~~l~~~~~a~v~l~~~~pi~~e~~~~~~~~Grfil--r~~~~-----------Tva~G~I~  105 (107)
T cd04093          57 PRCLTKGQTAIVEIELERPIPLELFKDNKELGRVVL--RRDGE-----------TIAAGLVT  105 (107)
T ss_pred             CcCcCCCCEEEEEEEECCeEEEEEcccCCCcceEEE--EcCCC-----------EEEEEEEE
Confidence            456999999999999999988  9999999999999  76665           99999985

This group contains proteins similar to yeast Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation and, to associate with Dom34. It has been speculated that yeast Hbs1 and Dom34 proteins may function as part of a complex with a role in gene expression.

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=97.84  E-value=8.1e-05  Score=81.38  Aligned_cols=39  Identities=28%  Similarity=0.348  Sum_probs=33.3

Q ss_pred             eEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHH
Q 024315           82 ILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLAC  120 (269)
Q Consensus        82 ~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~  120 (269)
                      +.+.+......+.+++.++.|++++|+|+||||||||++
T Consensus       601 L~l~~~~~~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~  639 (1809)
T PRK00635        601 LTLSKATKHNLKDLTISLPLGRLTVVTGVSGSGKSSLIN  639 (1809)
T ss_pred             EEEeccccCCccceEEEEcCCcEEEEEcCCCCCHHHHHH
Confidence            455555555578889999999999999999999999999

>PLN02200 adenylate kinase family protein

Probab=97.84  E-value=0.00014  Score=64.07  Aligned_cols=31  Identities=19%  Similarity=0.312  Sum_probs=26.5

Q ss_pred             eecCCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315           97 LLQQKGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus        97 l~~~~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      +....+.+++|+|++||||||+++.|+..+.
T Consensus        38 ~~~~~~~ii~I~G~PGSGKsT~a~~La~~~g   68 (234)
T PLN02200         38 SKEKTPFITFVLGGPGSGKGTQCEKIVETFG   68 (234)
T ss_pred             ccCCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3455678899999999999999999998774

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.83  E-value=1.8e-05  Score=67.45  Aligned_cols=37  Identities=35%  Similarity=0.426  Sum_probs=28.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~  142 (269)
                      +++|+|+|||||||+++.|.+.+.  +.....+..|+..
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l~--~~~~~v~~~D~~~   37 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQLG--NPKVVIISQDSYY   37 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC--CCCeEEEEecccc
Confidence            479999999999999999999872  2345566666544

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.82  E-value=2.2e-05  Score=54.88  Aligned_cols=33  Identities=42%  Similarity=0.495  Sum_probs=26.6

Q ss_pred             cceecC-CCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315           95 QQLLQQ-KGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus        95 ~sl~~~-~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      ..+.+. .|.++.|+|+|||||||++.++.-.|.
T Consensus        15 ~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~   48 (62)
T PF13555_consen   15 ETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLY   48 (62)
T ss_pred             eEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence            344444 356899999999999999999988775

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=97.81  E-value=2.6e-05  Score=68.31  Aligned_cols=31  Identities=39%  Similarity=0.469  Sum_probs=27.7

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHHhhccC
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQALHWR  129 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~  129 (269)
                      ..++.+++|.|+||||||||++.|.+.++..
T Consensus        30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~   60 (229)
T PRK09270         30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQD   60 (229)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence            3568899999999999999999999999754

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.80  E-value=3.8e-05  Score=59.46  Aligned_cols=42  Identities=43%  Similarity=0.527  Sum_probs=33.9

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~  142 (269)
                      ++..+.|+||+|+||||+++.|+..+.....+.+.++.+...
T Consensus         1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~   42 (148)
T smart00382        1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDIL   42 (148)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEcc
Confidence            356889999999999999999999886543367788776654

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=97.80  E-value=2e-05  Score=68.78  Aligned_cols=24  Identities=42%  Similarity=0.429  Sum_probs=22.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhc
Q 024315          104 VIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      +++|.|+|||||||+++.|.+.+.
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~   24 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLS   24 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHh
Confidence            479999999999999999999985

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PRK06696 uridine kinase; Validated

Probab=97.79  E-value=3e-05  Score=67.65  Aligned_cols=43  Identities=26%  Similarity=0.362  Sum_probs=34.4

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~  142 (269)
                      ...-+|+|.|++||||||+++.|+..|...+...+.+..|+..
T Consensus        20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~   62 (223)
T PRK06696         20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH   62 (223)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence            4567999999999999999999999996555456666666654

>PRK13974 thymidylate kinase; Provisional

Probab=97.78  E-value=0.0001  Score=63.84  Aligned_cols=29  Identities=38%  Similarity=0.446  Sum_probs=26.5

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhccC
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALHWR  129 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~  129 (269)
                      +|++++|.|+.||||||+++.|.+.+...
T Consensus         2 ~g~~i~~eG~dGsGKsT~~~~l~~~l~~~   30 (212)
T PRK13974          2 KGKFIVLEGIDGCGKTTQIDHLSKWLPSS   30 (212)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            58999999999999999999999998643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	269
3uie_A	200	Crystal Structure Of Adenosine 5'-Phosphosulfate Ki		3e-85
1d6j_A	211	Crystal Structure Of Adenosine 5'-Phosphosulfate (A		9e-51
1x6v_B	630	The Crystal Structure Of Human 3'-Phosphoadenosine-		4e-48
2ofw_A	208	Crystal Structure Of The Apsk Domain Of Human Papss		2e-47
2ofx_A	207	Crystal Structure Of The Apsk Domain Of Human Papss		4e-47
3cr7_A	197	Crystal Structure Of N-Terminal Truncation Of Aps K		1e-45
2pey_A	179	Crystal Strucutre Of Deletion Mutant Of Aps-Kinase		4e-45
2ax4_A	198	Crystal Structure Of The Kinase Domain Of Human 3'-		7e-45
2gks_A	546	Crystal Structure Of The Bi-Functional Atp Sulfuryl		8e-41
2yvu_A	186	Crystal Structure Of Ape1195 Length = 186		4e-31
3cr8_A	552	Hexameric Aps Kinase From Thiobacillus Denitrifican		2e-27
1m8p_A	573	Crystal Structure Of P. Chrysogenum Atp Sulfurylase		4e-22
1i2d_A	573	Crystal Structure Of Atp Sulfurylase From Penicilli		5e-22

>pdb|3UIE|A Chain A, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase From Arabidopsis Thaliana In Complex With Amppnp And Aps Length = 200

Iteration: 1
 Score =  311 bits (796), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 144/172 (83%), Positives = 158/172 (91%)
Query: 79  STNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG 138
           STNI WH+ SV+K DRQ+LL QKGCVIW+TGLSGSGKSTLACAL+Q L+ +GKL YILDG
Sbjct: 2   STNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDG 61
Query: 139 DNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPE 198
           DN RHGLNRDLSFKAEDR ENIRR+GEVAKLFADAG+ICIA LISPYR DRDACRS+LPE
Sbjct: 62  DNVRHGLNRDLSFKAEDRAENIRRVGEVAKLFADAGIICIASLISPYRTDRDACRSLLPE 121
Query: 199 GDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEVGV 250
           GDF+EVFMDVPL VCEARDPKGLYKLAR GK+KGFTGIDDPYEPPLNCE+ +
Sbjct: 122 GDFVEVFMDVPLSVCEARDPKGLYKLARAGKIKGFTGIDDPYEPPLNCEISL 173

>pdb|1D6J|A Chain A, Crystal Structure Of Adenosine 5'-Phosphosulfate (Aps) Kinase From Penicillium Chrysogenum Length = 211

Iteration: 1
 Score =  196 bits (499), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 101/187 (54%), Positives = 121/187 (64%), Gaps = 15/187 (8%)
Query: 79  STNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALS-QALHWRGKLTYILD 137
           STNI +H +++ + +R +L  Q+G  IW+TGLS SGKSTLA  L  Q +  R    Y LD
Sbjct: 2   STNITFHASALTRSERTELRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61
Query: 138 GDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSM-- 195
           GDN R GLN+DL F   DR ENIRRI EVAKLFAD+  I I   ISPYRKDRD  R +  
Sbjct: 62  GDNIRFGLNKDLGFSEADRNENIRRIAEVAKLFADSNSIAITSFISPYRKDRDTARQLHE 121
Query: 196 ---------LPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNC 246
                    LP   F+EV++DVP++V E RDPKGLYK AREG +K FTGI  PYE P N 
Sbjct: 122 VATPGEETGLP---FVEVYVDVPVEVAEQRDPKGLYKKAREGVIKEFTGISAPYEAPANP 178
Query: 247 EVGVHVW 253
           EV V  +
Sbjct: 179 EVHVKNY 185

>pdb|1X6V|B Chain B, The Crystal Structure Of Human 3'-Phosphoadenosine-5'- Phosphosulfate Synthetase 1 Length = 630

Iteration: 1
 Score =  187 bits (476), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 94/183 (51%), Positives = 123/183 (67%), Gaps = 8/183 (4%)
Query: 68  NNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKG----CVIWITGLSGSGKSTLACALS 123
           +N  QN  + ++TN+ +  + V +  R Q++  +G    C +W+TGLSG+GK+T++ AL 
Sbjct: 14  SNNAQNWGMQRATNVTYQAHHVSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALE 73
Query: 124 QALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLIS 183
           + L   G   Y LDGDN R GLN++L F  EDR EN+RRI EVAKLFADAG++CI   IS
Sbjct: 74  EYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITSFIS 133
Query: 184 PYRKDRDACRSMLPEG---DFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPY 240
           PY +DR+  R  + EG    F EVF+D PL VCE RD KGLYK AR G++KGFTGID  Y
Sbjct: 134 PYTQDRNNARQ-IHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDSEY 192
Query: 241 EPP 243
           E P
Sbjct: 193 EKP 195

>pdb|2OFW|A Chain A, Crystal Structure Of The Apsk Domain Of Human Papss1 Complexed With 2 Aps Molecules Length = 208

Iteration: 1
 Score =  185 bits (470), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 92/175 (52%), Positives = 118/175 (67%), Gaps = 12/175 (6%)
Query: 78  KSTNILWHKNSVDKRDRQQLLQQKG----CVIWITGLSGSGKSTLACALSQALHWRGKLT 133
           ++TN+ +  + V +  R Q++  +G    C IW+TGLSG+GK+T++ AL + L   G   
Sbjct: 5   RATNVTYQAHHVSRNKRGQVVGTRGGFRGCTIWLTGLSGAGKTTVSMALEEYLVCHGIPC 64
Query: 134 YILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACR 193
           Y LDGDN R GLN++L F  EDR EN+RRI EVAKLFADAG++CI   ISPY +DR+  R
Sbjct: 65  YTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITSFISPYTQDRNNAR 124
Query: 194 SM-----LPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPP 243
            +     LP   F EVF+D PL VCE RD KGLYK AR G++KGFTGID  YE P
Sbjct: 125 QIHEGASLP---FFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDSEYEKP 176

>pdb|2OFX|A Chain A, Crystal Structure Of The Apsk Domain Of Human Papss1 In Complex With Adpmg And Paps Length = 207

Iteration: 1
 Score =  184 bits (468), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 91/174 (52%), Positives = 117/174 (67%), Gaps = 12/174 (6%)
Query: 79  STNILWHKNSVDKRDRQQLLQQKG----CVIWITGLSGSGKSTLACALSQALHWRGKLTY 134
           +TN+ +  + V +  R Q++  +G    C +W+TGLSG+GK+T++ AL + L   G   Y
Sbjct: 5   ATNVTYQAHHVSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCY 64
Query: 135 ILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRS 194
            LDGDN R GLN++L F  EDR EN+RRI EVAKLFADAG++CI   ISPY +DR+  R 
Sbjct: 65  TLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQ 124
Query: 195 M-----LPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPP 243
           +     LP   F EVF+D PL VCE RD KGLYK AR G++KGFTGID  YE P
Sbjct: 125 IHEGASLP---FFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDSEYEKP 175

>pdb|3CR7|A Chain A, Crystal Structure Of N-Terminal Truncation Of Aps Kinase From Penicillium Chrysogenum: Ternary Structure With Adp And Paps Length = 197

Iteration: 1
 Score =  179 bits (455), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 94/166 (56%), Positives = 107/166 (64%), Gaps = 15/166 (9%)
Query: 100 QKGCVIWITGLSGSGKSTLACALS-QALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE 158
           Q+G  IW+TGLS SGKSTLA  L  Q +  R    Y LDGDN R GLN+DL F   DR E
Sbjct: 1   QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGFSEADRNE 60
Query: 159 NIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSM-----------LPEGDFIEVFMD 207
           NIRRI EVAKLFAD+  I I   ISPYRKDRD  R +           LP   F+EV++D
Sbjct: 61  NIRRIAEVAKLFADSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLP---FVEVYVD 117
Query: 208 VPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEVGVHVW 253
           VP++V E RDPKGLYK AREG +K FTGI  PYE P N EV V  +
Sbjct: 118 VPVEVAEQRDPKGLYKKAREGVIKEFTGISAPYEAPANPEVHVKNY 163

>pdb|2PEY|A Chain A, Crystal Strucutre Of Deletion Mutant Of Aps-Kinase Domain Of Human Paps-Synthetase 1 Length = 179

Iteration: 1
 Score =  177 bits (450), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 86/150 (57%), Positives = 105/150 (70%), Gaps = 8/150 (5%)
Query: 99  QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE 158
             +GC +W+TGLSG+GK+T++ AL + L   G   Y LDGDN R GLN++L F  EDR E
Sbjct: 2   HMRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREE 61
Query: 159 NIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSM-----LPEGDFIEVFMDVPLQVC 213
           N+RRI EVAKLFADAG++CI   ISPY +DR+  R +     LP   F EVF+D PL VC
Sbjct: 62  NVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLP---FFEVFVDAPLHVC 118
Query: 214 EARDPKGLYKLAREGKVKGFTGIDDPYEPP 243
           E RD KGLYK AR G++KGFTGID  YE P
Sbjct: 119 EQRDVKGLYKKARAGEIKGFTGIDSEYEKP 148

>pdb|2AX4|A Chain A, Crystal Structure Of The Kinase Domain Of Human 3'- Phosphoadenosine 5'-Phosphosulphate Synthetase 2 Length = 198

Iteration: 1
 Score =  177 bits (448), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 85/148 (57%), Positives = 105/148 (70%), Gaps = 8/148 (5%)
Query: 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENI 160
           +GC +W+TGLSG+GK+T++ AL + L       Y LDGDN RHGLNR+L F   DR ENI
Sbjct: 21  RGCTVWLTGLSGAGKTTISFALEEYLVSHAIPCYSLDGDNVRHGLNRNLGFSPGDREENI 80
Query: 161 RRIGEVAKLFADAGVICIACLISPYRKDRDACRSM-----LPEGDFIEVFMDVPLQVCEA 215
           RRI EVAKLFADAG++CI   ISP+ KDR+  R +     LP   F E+F+D PL +CE+
Sbjct: 81  RRIAEVAKLFADAGLVCITSFISPFAKDRENARKIHESAGLP---FFEIFVDAPLNICES 137
Query: 216 RDPKGLYKLAREGKVKGFTGIDDPYEPP 243
           RD KGLYK AR G++KGFTGID  YE P
Sbjct: 138 RDVKGLYKRARAGEIKGFTGIDSDYEKP 165

>pdb|2GKS|A Chain A, Crystal Structure Of The Bi-Functional Atp Sulfurylase-Aps Kinase From Aquifex Aeolicus, A Chemolithotrophic Thermophile Length = 546

Iteration: 1
 Score =  163 bits (413), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 78/152 (51%), Positives = 102/152 (67%)
Query: 99  QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE 158
            ++G  +W+TGL  +GKST+A  L+  L  RG+   +LDGD  R  L+R L F  EDR+ 
Sbjct: 369 HKQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSRGLGFSKEDRIT 428
Query: 159 NIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDP 218
           NI R+G VA        + I  L+SPYR  R+  R+M+ EG FIEVF+D P++VCE RD 
Sbjct: 429 NILRVGFVASEIVKHNGVVICALVSPYRSARNQVRNMMEEGKFIEVFVDAPVEVCEERDV 488
Query: 219 KGLYKLAREGKVKGFTGIDDPYEPPLNCEVGV 250
           KGLYK A+EG +KGFTG+DDPYEPP+  EV V
Sbjct: 489 KGLYKKAKEGLIKGFTGVDDPYEPPVAPEVRV 520

>pdb|2YVU|A Chain A, Crystal Structure Of Ape1195 Length = 186

Iteration: 1
 Score =  131 bits (329), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 63/151 (41%), Positives = 96/151 (63%), Gaps = 2/151 (1%)
Query: 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVEN 159
           +KG V+W+TGL GSGK+T+A  L+  L   G    +LDGD  R  ++    F  E+R+ +
Sbjct: 11  EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSEGAGFTREERLRH 70
Query: 160 IRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGD--FIEVFMDVPLQVCEARD 217
           ++RI  +A+L A  GVI I   +SPY++ R+  R ++ E    F+E+++   L+    RD
Sbjct: 71  LKRIAWIARLLARNGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRD 130
Query: 218 PKGLYKLAREGKVKGFTGIDDPYEPPLNCEV 248
           PKGLYK A +G+++ FTGI DPYEPP N ++
Sbjct: 131 PKGLYKKALKGELENFTGITDPYEPPENPQL 161

>pdb|3CR8|A Chain A, Hexameric Aps Kinase From Thiobacillus Denitrificans Length = 552

Iteration: 1
 Score =  119 bits (298), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 64/154 (41%), Positives = 92/154 (59%), Gaps = 2/154 (1%)
Query: 99  QQKGCVIWITGLSGSGKSTLACALS-QALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRV 157
           +++G  ++ TGLSG+GKSTLA AL+ + +   G+   +LDGD  R  L+ +L F    R 
Sbjct: 366 ERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRD 425
Query: 158 ENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPE-GDFIEVFMDVPLQVCEAR 216
            N+RRIG VA        I I   I+PYR+ R   R+M+   G F+E+ +  P++ CE+R
Sbjct: 426 VNVRRIGFVASEITKNRGIAICAPIAPYRQTRRDVRAMIEAVGGFVEIHVATPIETCESR 485
Query: 217 DPKGLYKLAREGKVKGFTGIDDPYEPPLNCEVGV 250
           D KGLY  AR G +  FTG+ DPYE P   E+ +
Sbjct: 486 DRKGLYAKARAGLIPEFTGVSDPYEVPETPELAI 519

>pdb|1M8P|A Chain A, Crystal Structure Of P. Chrysogenum Atp Sulfurylase In The T-State Length = 573

Iteration: 1
 Score =  101 bits (252), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 63/152 (41%), Positives = 87/152 (57%), Gaps = 2/152 (1%)
Query: 101 KGCVIWITGLSGSGKSTLACALSQALHWRG-KLTYILDGDNCRHGLNRDLSFKAEDRVEN 159
           +G  I++TG   SGK  +A AL   L+ +G +   +L GD  RH L+ +L F  EDR  N
Sbjct: 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTN 454
Query: 160 IRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPE-GDFIEVFMDVPLQVCEARDP 218
           I+RI  VA     AG   IA  I+PY + R   R  + + G F  V +  PL+ CE  D 
Sbjct: 455 IQRIAFVATELTRAGAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDK 514
Query: 219 KGLYKLAREGKVKGFTGIDDPYEPPLNCEVGV 250
           +G+Y  AR G++KGFTG+DDPYE P   ++ V
Sbjct: 515 RGIYAAARRGEIKGFTGVDDPYETPEKADLVV 546

>pdb|1I2D|A Chain A, Crystal Structure Of Atp Sulfurylase From Penicillium Chrysogenum Length = 573

Iteration: 1
 Score =  101 bits (251), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 63/152 (41%), Positives = 87/152 (57%), Gaps = 2/152 (1%)
Query: 101 KGCVIWITGLSGSGKSTLACALSQALHWRG-KLTYILDGDNCRHGLNRDLSFKAEDRVEN 159
           +G  I++TG   SGK  +A AL   L+ +G +   +L GD  RH L+ +L F  EDR  N
Sbjct: 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTN 454
Query: 160 IRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPE-GDFIEVFMDVPLQVCEARDP 218
           I+RI  VA     AG   IA  I+PY + R   R  + + G F  V +  PL+ CE  D 
Sbjct: 455 IQRIAFVATELTRAGAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDK 514
Query: 219 KGLYKLAREGKVKGFTGIDDPYEPPLNCEVGV 250
           +G+Y  AR G++KGFTG+DDPYE P   ++ V
Sbjct: 515 RGIYAAARRGEIKGFTGVDDPYETPEKADLVV 546

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	269
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	1e-118
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	1e-113
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	1e-107
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	1e-105
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	3e-96
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	6e-81
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	2e-77
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	2e-69
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	3e-28
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	8e-19
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	2e-18
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	9e-17
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	7e-16
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	3e-15
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	9e-15
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	5e-12
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	2e-08
2vli_A	183	Antibiotic resistance protein; transferase, tunica	2e-08
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	3e-07
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	2e-04
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	3e-04
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	4e-04

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} PDB: 4fxp_A* Length = 200

 Score =  335 bits (861), Expect = e-118
 Identities = 144/170 (84%), Positives = 157/170 (92%)

Query: 79  STNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG 138
           STNI WH+ SV+K DRQ+LL QKGCVIW+TGLSGSGKSTLACAL+Q L+ +GKL YILDG
Sbjct: 2   STNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDG 61

Query: 139 DNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPE 198
           DN RHGLNRDLSFKAEDR ENIRR+GEVAKLFADAG+ICIA LISPYR DRDACRS+LPE
Sbjct: 62  DNVRHGLNRDLSFKAEDRAENIRRVGEVAKLFADAGIICIASLISPYRTDRDACRSLLPE 121

Query: 199 GDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEV 248
           GDF+EVFMDVPL VCEARDPKGLYKLAR GK+KGFTGIDDPYEPPLNCE+
Sbjct: 122 GDFVEVFMDVPLSVCEARDPKGLYKLARAGKIKGFTGIDDPYEPPLNCEI 171

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* Length = 211

 Score =  323 bits (829), Expect = e-113
 Identities = 98/179 (54%), Positives = 116/179 (64%), Gaps = 9/179 (5%)

Query: 79  STNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILD 137
           STNI +H +++ + +R +L  Q+G  IW+TGLS SGKSTLA  L   L   R    Y LD
Sbjct: 2   STNITFHASALTRSERTELRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61

Query: 138 GDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLP 197
           GDN R GLN+DL F   DR ENIRRI EVAKLFAD+  I I   ISPYRKDRD  R +  
Sbjct: 62  GDNIRFGLNKDLGFSEADRNENIRRIAEVAKLFADSNSIAITSFISPYRKDRDTARQLHE 121

Query: 198 EG--------DFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEV 248
                      F+EV++DVP++V E RDPKGLYK AREG +K FTGI  PYE P N EV
Sbjct: 122 VATPGEETGLPFVEVYVDVPVEVAEQRDPKGLYKKAREGVIKEFTGISAPYEAPANPEV 180

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} Length = 186

 Score =  307 bits (789), Expect = e-107
 Identities = 63/160 (39%), Positives = 97/160 (60%), Gaps = 2/160 (1%)

Query: 91  KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLS 150
           +        +KG V+W+TGL GSGK+T+A  L+  L   G    +LDGD  R  ++    
Sbjct: 2   QALTTYKCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSEGAG 61

Query: 151 FKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGD--FIEVFMDV 208
           F  E+R+ +++RI  +A+L A  GVI I   +SPY++ R+  R ++ E    F+E+++  
Sbjct: 62  FTREERLRHLKRIAWIARLLARNGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKA 121

Query: 209 PLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEV 248
            L+    RDPKGLYK A +G+++ FTGI DPYEPP N ++
Sbjct: 122 SLEEVIRRDPKGLYKKALKGELENFTGITDPYEPPENPQL 161

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* Length = 179

 Score =  300 bits (772), Expect = e-105
 Identities = 85/152 (55%), Positives = 105/152 (69%), Gaps = 2/152 (1%)

Query: 99  QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE 158
             +GC +W+TGLSG+GK+T++ AL + L   G   Y LDGDN R GLN++L F  EDR E
Sbjct: 2   HMRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREE 61

Query: 159 NIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEG--DFIEVFMDVPLQVCEAR 216
           N+RRI EVAKLFADAG++CI   ISPY +DR+  R +       F EVF+D PL VCE R
Sbjct: 62  NVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQR 121

Query: 217 DPKGLYKLAREGKVKGFTGIDDPYEPPLNCEV 248
           D KGLYK AR G++KGFTGID  YE P   E+
Sbjct: 122 DVKGLYKKARAGEIKGFTGIDSEYEKPEAPEL 153

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A* Length = 630

 Score =  294 bits (754), Expect = 3e-96
 Identities = 93/187 (49%), Positives = 123/187 (65%), Gaps = 6/187 (3%)

Query: 68  NNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQK----GCVIWITGLSGSGKSTLACALS 123
           +N  QN  + ++TN+ +  + V +  R Q++  +    GC +W+TGLSG+GK+T++ AL 
Sbjct: 14  SNNAQNWGMQRATNVTYQAHHVSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALE 73

Query: 124 QALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLIS 183
           + L   G   Y LDGDN R GLN++L F  EDR EN+RRI EVAKLFADAG++CI   IS
Sbjct: 74  EYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITSFIS 133

Query: 184 PYRKDRDACRSMLPEG--DFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYE 241
           PY +DR+  R +       F EVF+D PL VCE RD KGLYK AR G++KGFTGID  YE
Sbjct: 134 PYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDSEYE 193

Query: 242 PPLNCEV 248
            P   E+
Sbjct: 194 KPEAPEL 200

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} Length = 552

 Score =  252 bits (646), Expect = 6e-81
 Identities = 68/196 (34%), Positives = 95/196 (48%), Gaps = 5/196 (2%)

Query: 61  ESAAISGNNLCQNSTVAKSTNILWHKNSVDKRDRQ---QLLQQKGCVIWITGLSGSGKST 117
                      Q    A      W+       +        +++G  ++ TGLSG+GKST
Sbjct: 325 ARLLTLSGEEFQRRMRAGLKIPEWYSFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKST 384

Query: 118 LACALSQALHWRGKLTY-ILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVI 176
           LA AL+  L   G     +LDGD  R  L+ +L F    R  N+RRIG VA        I
Sbjct: 385 LARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEITKNRGI 444

Query: 177 CIACLISPYRKDRDACRSMLPE-GDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTG 235
            I   I+PYR+ R   R+M+   G F+E+ +  P++ CE+RD KGLY  AR G +  FTG
Sbjct: 445 AICAPIAPYRQTRRDVRAMIEAVGGFVEIHVATPIETCESRDRKGLYAKARAGLIPEFTG 504

Query: 236 IDDPYEPPLNCEVGVH 251
           + DPYE P   E+ + 
Sbjct: 505 VSDPYEVPETPELAID 520

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus} Length = 546

 Score =  243 bits (621), Expect = 2e-77
 Identities = 78/175 (44%), Positives = 105/175 (60%)

Query: 77  AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL 136
                    + +    +      ++G  +W+TGL  +GKST+A  L+  L  RG+   +L
Sbjct: 347 KLPEWFTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLL 406

Query: 137 DGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSML 196
           DGD  R  L+R L F  EDR+ NI R+G VA        + I  L+SPYR  R+  R+M+
Sbjct: 407 DGDVVRTHLSRGLGFSKEDRITNILRVGFVASEIVKHNGVVICALVSPYRSARNQVRNMM 466

Query: 197 PEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEVGVH 251
            EG FIEVF+D P++VCE RD KGLYK A+EG +KGFTG+DDPYEPP+  EV V 
Sbjct: 467 EEGKFIEVFVDAPVEVCEERDVKGLYKKAKEGLIKGFTGVDDPYEPPVAPEVRVD 521

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A* Length = 573

 Score =  223 bits (569), Expect = 2e-69
 Identities = 64/176 (36%), Positives = 91/176 (51%), Gaps = 2/176 (1%)

Query: 78  KSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTY-IL 136
                 + +     R+       +G  I++TG   SGK  +A AL   L+ +G  +  +L
Sbjct: 372 IPEWFSYPEVVKILRESNPPRATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLL 431

Query: 137 DGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSML 196
            GD  RH L+ +L F  EDR  NI+RI  VA     AG   IA  I+PY + R   R  +
Sbjct: 432 LGDTVRHELSSELGFTREDRHTNIQRIAFVATELTRAGAAVIAAPIAPYEESRKFARDAV 491

Query: 197 PE-GDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEVGVH 251
            + G F  V +  PL+ CE  D +G+Y  AR G++KGFTG+DDPYE P   ++ V 
Sbjct: 492 SQAGSFFLVHVATPLEHCEQSDKRGIYAAARRGEIKGFTGVDDPYETPEKADLVVD 547

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* Length = 260

 Score =  107 bits (269), Expect = 3e-28
 Identities = 27/147 (18%), Positives = 51/147 (34%), Gaps = 10/147 (6%)

Query: 103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRR 162
            +I +TGL G GKST +  L++ L        +L  D  R           E   E I++
Sbjct: 5   MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFP----VWKEKYEEFIKK 60

Query: 163 IGEVAKLFADAGVICIACLISPYRKDRDACRSMLPE--GDFIEVFMDVPLQVCEARDPKG 220
                   A      I    + Y   R    ++  +   ++  +++   L V   R+ + 
Sbjct: 61  STYRLIDSALKNYWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIER 120

Query: 221 LYKLAREGKVKGFTGIDDPYEPPLNCE 247
             K+  E        + + ++ P    
Sbjct: 121 GEKIPNE----VIKKMYEKFDEPGKKY 143

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} Length = 200

 Score = 81.3 bits (200), Expect = 8e-19
 Identities = 41/181 (22%), Positives = 65/181 (35%), Gaps = 26/181 (14%)

Query: 85  HKNSVD-----KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139
           H + VD        +  +  +    + + G+SGSGK+T+A  ++             + D
Sbjct: 7   HSSGVDLGTENLYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADETGLE-----FAEAD 61

Query: 140 NCRHGLNRD-----LSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRS 194
                 N       +    EDR   +R + E     ADAGV  I    +  R  RD  R 
Sbjct: 62  AFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMDARADAGVSTIITCSALKRTYRDVLRE 121

Query: 195 MLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGID---DPYEPPLNCEVGVH 251
             P  DF  + +D P +V + R         REG     + +       E     E G+ 
Sbjct: 122 GPPSVDF--LHLDGPAEVIKGR------MSKREGHFMPASLLQSQLATLEALEPDESGIV 173

Query: 252 V 252
           +
Sbjct: 174 L 174

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* Length = 175

 Score = 79.3 bits (195), Expect = 2e-18
 Identities = 32/162 (19%), Positives = 57/162 (35%), Gaps = 21/162 (12%)

Query: 99  QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD-----LSFKA 153
                +  + G+SGSGKS +A  ++  LH        LDGD      N +          
Sbjct: 5   NHDHHIYVLMGVSGSGKSAVASEVAHQLHAA-----FLDGDFLHPRRNIEKMASGEPLND 59

Query: 154 EDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVC 213
           +DR   ++ + + A        + +    +  +  RD  R   P  +   +++     V 
Sbjct: 60  DDRKPWLQALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNP--NLSFIYLKGDFDVI 117

Query: 214 EARDPKGLYKLAREGKVKGFTGID---DPYEPPLNCEVGVHV 252
           E+R        AR+G       +    +  + P   E  V V
Sbjct: 118 ESR------LKARKGHFFKTQMLVTQFETLQEPGADETDVLV 153

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Length = 193

 Score = 75.4 bits (185), Expect = 9e-17
 Identities = 21/124 (16%), Positives = 40/124 (32%), Gaps = 12/124 (9%)

Query: 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVEN 159
           Q   +I +TG   +GK+TL+ AL+  L        +L  D  +  +   L +   +    
Sbjct: 3   QTPALIIVTGHPATGKTTLSQALATGLRLP-----LLSKDAFKEVMFDGLGWSDREWSRR 57

Query: 160 IRRIG-----EVAKLFADAGVICIACLISPYRKDRDACRSMLPEGD--FIEVFMDVPLQV 212
           +           A     +G   I         D +  +++        I++       V
Sbjct: 58  VGATAIMMLYHTAATILQSGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDV 117

Query: 213 CEAR 216
              R
Sbjct: 118 LVER 121

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* Length = 178

 Score = 72.5 bits (177), Expect = 7e-16
 Identities = 21/130 (16%), Positives = 38/130 (29%), Gaps = 14/130 (10%)

Query: 101 KGCVIWITGLSGSGKSTLACALSQAL----------HWRGKLTYILDGDNCRHGLNRDLS 150
              +I + G S +GKS +   L   L               +   +         + D  
Sbjct: 2   TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGG 61

Query: 151 FKAEDRVENIRRI-GEVAKLFADAG--VICIACLISPYRKDRDACRSMLPEGDFIEVFMD 207
                    +     E     A AG  +I     +      ++  RS + + D + V + 
Sbjct: 62  VSIGPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAA-AQERWRSFVGDLDVLWVGVR 120

Query: 208 VPLQVCEARD 217
               V E R+
Sbjct: 121 CDGAVAEGRE 130

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 Length = 189

 Score = 71.1 bits (174), Expect = 3e-15
 Identities = 20/121 (16%), Positives = 39/121 (32%), Gaps = 10/121 (8%)

Query: 103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVEN--- 159
            +  ITG +G GKST    L+  L      +  ++GD   H +        E        
Sbjct: 3   KLYIITGPAGVGKSTTCKRLAAQL----DNSAYIEGDIINHMVVGGYRPPWESDELLALT 58

Query: 160 IRRIGEVAKLFADAGVICIACLI---SPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEAR 216
            + I ++   F  A    +   I             ++ + + +   + +    +    R
Sbjct: 59  WKNITDLTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRR 118

Query: 217 D 217
           D
Sbjct: 119 D 119

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 Length = 191

 Score = 70.1 bits (171), Expect = 9e-15
 Identities = 23/130 (17%), Positives = 42/130 (32%), Gaps = 11/130 (8%)

Query: 99  QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD-----LSFKA 153
              G ++ ++G  GSGKST+A AL+               D+    +        L    
Sbjct: 6   DLGGNILLLSGHPGSGKSTIAEALANLPGVPK---VHFHSDDLWGYIKHGRIDPWLPQSH 62

Query: 154 EDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFI--EVFMDVPLQ 211
           +     ++   +VA  +A  G   I   +        A  ++     +I         ++
Sbjct: 63  QQNRMIMQIAADVAGRYAKEGYFVILDGVV-RPDWLPAFTALARPLHYIVLRTTAAEAIE 121

Query: 212 VCEARDPKGL 221
            C  R    L
Sbjct: 122 RCLDRGGDSL 131

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} Length = 202

 Score = 62.4 bits (151), Expect = 5e-12
 Identities = 38/173 (21%), Positives = 61/173 (35%), Gaps = 24/173 (13%)

Query: 88  SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNR 147
           S++ +     +++    I + G+SGSGKS++  A+++A  +       ++GD      N 
Sbjct: 4   SIEYKSEAAAVRRFPGSIVVMGVSGSGKSSVGEAIAEACGYPF-----IEGDALHPPENI 58

Query: 148 D-----LSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFI 202
                 +    +DR   +  IGE         V C A      R  RD  R   P G   
Sbjct: 59  RKMSEGIPLTDDDRWPWLAAIGERLASREPVVVSCSA----LKRSYRDKLRESAP-GGLA 113

Query: 203 EVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGID---DPYEPPLNCEVGVHV 252
            VF+     V   R         R G     + +    +  E P      V V
Sbjct: 114 FVFLHGSESVLAER------MHHRTGHFMPSSLLQTQLETLEDPRGEVRTVAV 160

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB: 2axp_A* Length = 173

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 22/120 (18%), Positives = 38/120 (31%), Gaps = 18/120 (15%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKA-------EDR 156
           +I + G     KST+A  LS+ L +      I+ G +     + +            ED 
Sbjct: 3   LIILEGPDCCFKSTVAAKLSKELKYP-----IIKGSSFELAKSGNEKLFEHFNKLADEDN 57

Query: 157 VENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEAR 216
           V  I R      ++A         L       R     +  +     V++     V + R
Sbjct: 58  VI-IDRFVYSNLVYAKKFKDYSI-LTERQL--RFIEDKIKAKAKV--VYLHADPSVIKKR 111

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} Length = 183

 Score = 52.3 bits (125), Expect = 2e-08
 Identities = 21/116 (18%), Positives = 33/116 (28%), Gaps = 4/116 (3%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRI 163
           +IWI G  G GK+  A  L + L           G   R       S   ++    I  +
Sbjct: 7   IIWINGPFGVGKTHTAHTLHERLPGSFVFEPEEMGQALRKLT-PGFSGDPQEHPMWIPLM 65

Query: 164 GEVAKLFADAG---VICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEAR 216
            +  +  +      +I    +    R  R                +  PL V   R
Sbjct: 66  LDALQYASREAAGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLER 121

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 Length = 181

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 24/124 (19%), Positives = 37/124 (29%), Gaps = 14/124 (11%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDLSFKAEDRVE 158
           +I   G  GSGKST A              Y ++ D+ R  +       +  +  +    
Sbjct: 4   IILTIGCPGSGKSTWAREFIAKNP----GFYNINRDDYRQSIMAHEERDEYKYTKKKEGI 59

Query: 159 NIRRIGEVAKLFADAGVICIACLIS---PYRKDRDACRSMLPE--GDFIEVFMDVPLQVC 213
                 + AK     G      +IS      + R A  +   E          DVP    
Sbjct: 60  VTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTEL 119

Query: 214 EARD 217
             R+
Sbjct: 120 VKRN 123

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A Length = 301

 Score = 49.3 bits (117), Expect = 4e-07
 Identities = 25/126 (19%), Positives = 38/126 (30%), Gaps = 14/126 (11%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDLSFKAEDRVE 158
           +I   G  GSGKST A              Y ++ D+ R  +       +  +  +    
Sbjct: 4   IILTIGCPGSGKSTWAREFIAKNP----GFYNINRDDYRQSIMAHEERDEYKYTKKKEGI 59

Query: 159 NIRRIGEVAKLFADAGVICIACLIS---PYRKDRDACRSMLPE--GDFIEVFMDVPLQVC 213
                 + AK     G      +IS      + R A  +   E          DVP    
Sbjct: 60  VTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTEL 119

Query: 214 EARDPK 219
             R+ K
Sbjct: 120 VKRNSK 125

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 2e-06
 Identities = 37/256 (14%), Positives = 73/256 (28%), Gaps = 85/256 (33%)

Query: 81  NILWHKNSV-DKRD----------RQQLLQ-QKGCVIWITGLSGSGKSTLA--------- 119
           + L++ N V  K +          RQ LL+ +    + I G+ GSGK+ +A         
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176

Query: 120 -CALSQALHW---------------RGKLTYILDGDNC-RHGLNRDLSFKAEDRVENIRR 162
            C +   + W                 KL Y +D +   R   + ++  +       +RR
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236

Query: 163 I------------------GEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEV 204
           +                   +    F +    C   L + +++  D     L       +
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAF-NLS--CKILLTTRFKQVTDF----LSAATTTHI 289

Query: 205 FMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEV--------------GV 250
            +D         + K L  L +      +        P                    G+
Sbjct: 290 SLDHHSMTLTPDEVKSL--LLK------YLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341

Query: 251 HVWYRFELAETWRITK 266
             W  ++     ++T 
Sbjct: 342 ATWDNWKHVNCDKLTT 357

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* Length = 206

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 16/87 (18%), Positives = 29/87 (33%), Gaps = 12/87 (13%)

Query: 97  LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD---NCRHGLNRDLSFKA 153
            L  KG         GSGK+T    ++ AL   G    ++D D   +  +      +   
Sbjct: 6   FLNPKG---------GSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKAGKAAFD 56

Query: 154 EDRVENIRRIGEVAKLFADAGVICIAC 180
                + + +  + K  AD     +  
Sbjct: 57  VFTAASEKDVYGIRKDLADYDFAIVDG 83

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 Length = 201

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 17/37 (45%), Positives = 22/37 (59%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140
           V+ I GLS SGK+TLA  LSQ L  +G    +   D+
Sbjct: 24  VLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 Length = 290

 Score = 40.0 bits (93), Expect = 4e-04
 Identities = 14/59 (23%), Positives = 23/59 (38%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRR 162
           +I +TG SG+G ST+     Q     G     ++GD        D+  + + R      
Sbjct: 7   IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAAGDA 65

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	269
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	99.95
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	99.91
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	99.9
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	99.86
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	99.85
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	99.8
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	99.78
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	99.77
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.68
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.66
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.65
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.65
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.64
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.63
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	99.63
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.63
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.63
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.63
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.63
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.63
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.63
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.62
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.62
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.62
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.62
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.61
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.61
1g6h_A	257	High-affinity branched-chain amino acid transport	99.61
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.61
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.6
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.59
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.59
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.59
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.58
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	99.58
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.56
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.56
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.56
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.54
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.54
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.53
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.51
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.51
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.5
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	99.49
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.49
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.48
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	99.48
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.46
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.45
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.44
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.42
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.42
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	99.41
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.39
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.38
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	99.36
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.32
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	99.32
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.32
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.31
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.28
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.27
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.22
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.2
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	99.17
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.17
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.16
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	99.14
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.14
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.12
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.09
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.09
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	99.06
2vli_A	183	Antibiotic resistance protein; transferase, tunica	99.0
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.0
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	99.0
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	99.0
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	98.96
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.96
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	98.93
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	98.92
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.91
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	98.89
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	98.86
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	98.84
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	98.83
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	98.82
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	98.8
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.78
2eyu_A	261	Twitching motility protein PILT; pilus retraction	98.76
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	98.76
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	98.75
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	98.75
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.73
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	98.71
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	98.71
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	98.71
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.65
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.64
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	98.62
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	98.62
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	98.62
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	98.62
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	98.62
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	98.59
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	98.59
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	98.58
1via_A	175	Shikimate kinase; structural genomics, transferase	98.56
4a74_A	231	DNA repair and recombination protein RADA; hydrola	98.56
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	98.55
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	98.55
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	98.54
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.54
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	98.53
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	98.53
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	98.48
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	98.47
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	98.47
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	98.47
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	98.47
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	98.46
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	98.46
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	98.45
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	98.45
1e69_A	322	Chromosome segregation SMC protein; structural mai	98.44
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	98.44
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	98.43
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.43
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	98.43
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	98.41
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	98.41
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	98.4
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	98.39
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	98.39
2og2_A	359	Putative signal recognition particle receptor; nuc	98.39
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	98.38
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	98.38
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	98.37
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	98.37
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	98.35
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	98.35
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	98.35
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	98.34
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	98.33
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	98.33
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	98.32
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	98.31
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	98.3
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.3
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	98.28
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	98.28
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	98.27
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	98.26
2ewv_A	372	Twitching motility protein PILT; pilus retraction	98.25
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	98.23
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	98.23
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.23
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	98.22
2cvh_A	220	DNA repair and recombination protein RADB; filamen	98.22
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	98.22
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	98.21
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.2
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	98.19
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.17
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	98.17
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	98.16
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	98.14
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	98.14
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.14
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.12
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	98.11
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	98.09
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	98.09
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	98.09
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	98.08
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	98.08
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	98.08
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.08
1p9r_A	418	General secretion pathway protein E; bacterial typ	98.06
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	98.05
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	98.02
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	98.01
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.98
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	97.96
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	97.96
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.95
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	97.95
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	97.95
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.94
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	97.94
3kta_A	182	Chromosome segregation protein SMC; structural mai	97.94
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.93
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.93
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	97.92
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.92
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	97.91
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	97.91
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	97.91
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.91
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.9
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	97.87
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	97.87
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.84
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	97.84
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.8
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	97.79
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	97.78
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	97.78
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.78
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.78
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	97.76
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.76
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.76
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	97.75
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.73
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.71
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	97.71
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	97.69
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.66
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	97.64
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.63
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	97.63
3e1y_E	204	Eukaryotic peptide chain release factor GTP-bindi	97.62
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.62
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.6
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	97.6
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	97.59
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.56
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	97.55
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.53
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	97.52
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.52
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	97.49
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.46
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.46
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.46
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.44
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	97.43
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	97.42
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	97.39
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	97.38
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.38
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	97.33
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.32
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	97.32
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	97.32
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	97.31
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	97.3
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.29
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.29
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.29
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	97.26
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	97.25
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.24
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.21
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	97.2
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	97.2
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.18
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	97.16
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.13
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.12
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	97.1
2r6a_A	454	DNAB helicase, replicative helicase; replication,	97.07
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	97.07
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.06
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	97.04
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.03
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	97.02
3bos_A	242	Putative DNA replication factor; P-loop containing	97.01
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	97.01
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	96.95
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	96.95
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	96.92
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.9
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.89
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	96.88
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.86
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.85
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	96.84
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.83
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.8
2xxa_A	433	Signal recognition particle protein; protein trans	96.8
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	96.79
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.75
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.74
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	96.74
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	96.72
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.71
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	96.7
2z43_A	324	DNA repair and recombination protein RADA; archaea	96.7
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.65
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	96.64
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.6
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	96.55
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.54
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.53
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.52
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.51
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.51
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	96.51
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.49
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.49
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.49
1u94_A	356	RECA protein, recombinase A; homologous recombinat	96.49
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.48
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	96.47
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.47
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	96.46
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	96.45
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	96.44
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	96.41
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	96.39
2wji_A	165	Ferrous iron transport protein B homolog; membrane	96.39
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	96.38
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	96.37
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.37
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	96.36
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.36
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	96.36
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	96.35
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	96.33
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	96.31
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	96.29
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	96.28
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	96.26
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	96.26
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	96.25
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	96.22
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	96.22
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	96.2
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.2
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	96.18
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	96.17
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	96.17
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	96.15
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.15
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	96.15
3ice_A	422	Transcription termination factor RHO; transcriptio	96.1
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	96.09
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	96.08
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	96.06
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	96.05
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	96.02
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	95.99
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	95.93
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	95.91
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	95.88
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	95.87
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	95.84
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	95.83
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	95.83
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	95.83
2qgz_A	308	Helicase loader, putative primosome component; str	95.83
2chg_A	226	Replication factor C small subunit; DNA-binding pr	95.79
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	95.78
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	95.78
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.76
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	95.74
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	95.73
1xp8_A	366	RECA protein, recombinase A; recombination, radior	95.73
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	95.72
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	95.7
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	95.7
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	95.67
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	95.66
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	95.65
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	95.65
2ged_A	193	SR-beta, signal recognition particle receptor beta	95.64
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.64
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	95.62
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	95.6
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	95.59
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	95.58
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	95.58
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	95.57
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	95.54
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	95.53
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	95.51
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	95.51
1tue_A	212	Replication protein E1; helicase, replication, E1E	95.5
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	95.5
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	95.49
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	95.49
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	95.48
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	95.48
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	95.47
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	95.46
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	95.45
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	95.44
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	95.43
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	95.43
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	95.42
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	95.42
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	95.39
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	95.38
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	95.36
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	95.36
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	95.34
2hf9_A	226	Probable hydrogenase nickel incorporation protein	95.34
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	95.33
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	95.32
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	95.3
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	95.3
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	95.29
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	95.24
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	95.23
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	95.21
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	95.2
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	95.2
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	95.19
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	95.19
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	95.19
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	95.17
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	95.17
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	95.17
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	95.16
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	95.15
1nrj_B	218	SR-beta, signal recognition particle receptor beta	95.15
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	95.15
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	95.14
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	95.12
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	95.11
3io5_A	333	Recombination and repair protein; storage dimer, i	95.11
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	95.04
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	95.04
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	95.03
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	95.02
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	95.0
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	94.99
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	94.99
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	94.99
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	94.99
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	94.98
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	94.96
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	94.96
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	94.96
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	94.95
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	94.95
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	94.94
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	94.93
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	94.92
2r44_A	331	Uncharacterized protein; putative ATPase, structur	94.91
3co5_A	143	Putative two-component system transcriptional RES	94.9
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	94.9
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	94.88
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	94.88
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	94.88
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	94.87
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	94.84
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	94.84
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	94.83
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	94.8
3pvs_A	447	Replication-associated recombination protein A; ma	94.8
3end_A	307	Light-independent protochlorophyllide reductase ir	94.79
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	94.76
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	94.76
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	94.75
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	94.71
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	94.71
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	94.71
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	94.71
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	94.7
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	94.69
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	94.69
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	94.68
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	94.68
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	94.68
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	94.67
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	94.66
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	94.64
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	94.64
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	94.61
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	94.6
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	94.59
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	94.57
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	94.57
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	94.56
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	94.56
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	94.52
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	94.51
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	94.51
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	94.49
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	94.47
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	94.46
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	94.46
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	94.46
1dek_A	241	Deoxynucleoside monophosphate kinase; transferase,	94.46
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	94.43
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	94.43
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	94.42
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	94.4
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	94.4
2fh5_B	214	SR-beta, signal recognition particle receptor beta	94.39
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	94.35
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	94.35
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	94.33
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	94.32
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	94.32
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	94.31

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=99.95  E-value=2.2e-27  Score=201.58  Aligned_cols=189  Identities=77%  Similarity=1.251  Sum_probs=162.6

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHH
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVEN  159 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~  159 (269)
                      .++.|+...+++.+|+++..++|++++|+|+|||||||+++.|++.+...|...+++++++++..+...+++..+++..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~~~~~~~~~~~~~~~~   82 (200)
T 3uie_A            3 TNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGLNRDLSFKAEDRAEN   82 (200)
T ss_dssp             -------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSSHHHHHHH
T ss_pred             CCCcccccccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhHhhcccCcChHHHHHH
Confidence            57889999999999999999999999999999999999999999999754544559999999888888889999988888


Q ss_pred             HHHHHHHHHHHHhCCcceeeccCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCccccccccccc
Q 024315          160 IRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDP  239 (269)
Q Consensus       160 ~~~l~~~a~~~~~~g~~~iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~~i~~~  239 (269)
                      +..+..++..+...+..+++++.++.+..|+.+++++....+..||+++|++++.+|..+++|...+.++...+.+++++
T Consensus        83 ~~~~~~~~~~~~~~~~~vi~~~~~~~~~~r~~~~~~~~~~~~~~v~L~a~~e~~~~R~~~~l~~~~r~~~~~~~~~~~~~  162 (200)
T 3uie_A           83 IRRVGEVAKLFADAGIICIASLISPYRTDRDACRSLLPEGDFVEVFMDVPLSVCEARDPKGLYKLARAGKIKGFTGIDDP  162 (200)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEECCCCCHHHHHHHHHTSCTTSEEEEEECCCHHHHHHHCTTSHHHHHHTTSSCSCBTTTBC
T ss_pred             HHHHHHHHHHHHhCCceEEEecCCchHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhcccchHHHHhcCCCCCCCCCCCc
Confidence            88888888888888998888888888888999999888777888999999999999999999999999999999999999


Q ss_pred             cCCCCCCCeEEEcCCCcCHHHHHH-HHhhc
Q 024315          240 YEPPLNCEVGVHVWYRFELAETWR-ITKWL  268 (269)
Q Consensus       240 ~e~p~~~e~~id~~~~~~~~~~~~-i~~~~  268 (269)
                      |++|..++++|||+...+++++.. |.++|
T Consensus       163 ~~~~~~~~~~idt~~~~~~~e~v~~i~~~l  192 (200)
T 3uie_A          163 YEPPLNCEISLGREGGTSPIEMAEKVVGYL  192 (200)
T ss_dssp             CCCCSSCSEEECCSSCCCHHHHHHHHHHHH
T ss_pred             CcCCCCCCEEEecCCCCCHHHHHHHHHHHH
Confidence            999999999999964378999888 77765

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=99.91  E-value=9.2e-25  Score=213.27  Aligned_cols=227  Identities=32%  Similarity=0.513  Sum_probs=182.4

Q ss_pred             CccccccccceeeccccccccccchhhhcccccccccccccccccccceEEee-CceeeccCcce--ecCCCeEEEEEcC
Q 024315           34 GFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHK-NSVDKRDRQQL--LQQKGCVIWITGL  110 (269)
Q Consensus        34 ~~~~~~~~~~f~~idr~~~~~~~~~~~~~~~~~gagmi~~~~~~~~~~~~~~~-~~v~~~~r~sl--~~~~g~~i~l~G~  110 (269)
                      +|..++.+|+|+++|+.+|.+.      ...++|+-+...... ......|+. ..|+...|..+  ..|+|.+|+|+|+
T Consensus       332 ~~~y~~~~g~~i~id~~~~~~~------~~~iSgt~ir~~l~~-g~~~p~w~~~~eVsr~lRe~~~~~gq~~~~I~l~Gl  404 (573)
T 1m8p_A          332 MVTYLPDTDEYRPVDQVPAGVK------TLNISGTELRRRLRS-GAHIPEWFSYPEVVKILRESNPPRATQGFTIFLTGY  404 (573)
T ss_dssp             CCCBBTTTTBCCCSSSSCTTSC------CBCCCHHHHHHHHHH-TCCCCTTTSCHHHHHHHHTTSCCTTTCCEEEEEECS
T ss_pred             ceEEEcCCCcEEecccCCCCce------eecCChHHHHHHHhc-cCCCCcccccccccHHHHHhcccccccceEEEeecC
Confidence            8999999999999999998521      112455533222111 112335664 34777777777  7899999999999


Q ss_pred             CCChHHHHHHHHHHhhccCC-ccEEEECCeecCcccccCCCCChhhHHHHHHHHHHHHHHHHhCCcceeeccCChHHHHH
Q 024315          111 SGSGKSTLACALSQALHWRG-KLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDR  189 (269)
Q Consensus       111 sGsGKSTla~~L~~~l~~~~-~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~l~~~a~~~~~~g~~~iv~~~~~~~~~r  189 (269)
                      +||||||+++.|+..|...| ...+.++++.+++.+..+.+|...++.++++++.+++..+.+.+..++.++.++++..|
T Consensus       405 sGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~l~~~~~f~~~er~~~i~ri~~v~~~~~~~g~~VI~~~is~~~~~R  484 (573)
T 1m8p_A          405 MNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTNIQRIAFVATELTRAGAAVIAAPIAPYEESR  484 (573)
T ss_dssp             TTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHTCTTCCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCCCHHHH
T ss_pred             CCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHHhccccCCChhHHHHHHHHHHHHHHHHHhCCCEEEEEcCCCcHHHH
Confidence            99999999999999986444 45789999999888888888999898888888888888888889888888888888888


Q ss_pred             HHHHHhCCCC-CccEEEEeCChhHHHhcChhhHHHHHhcCccccccccccccCCCCCCCeEEEcCCCcCHHHHHH-HHhh
Q 024315          190 DACRSMLPEG-DFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEVGVHVWYRFELAETWR-ITKW  267 (269)
Q Consensus       190 ~~ar~ll~~~-~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~~i~~~~e~p~~~e~~id~~~~~~~~~~~~-i~~~  267 (269)
                      +.+++++... .+..||+++|+++|.+|+.+++|+..+.+++..+.+++++|++|..++++|||+ ..+++++.. |.++
T Consensus       485 ~~~r~l~~~~g~~~~V~Lda~~ev~~~R~~r~l~~~~~~~~i~~~~~~r~~~~~p~~~dl~IDts-~~s~eevv~~Il~~  563 (573)
T 1m8p_A          485 KFARDAVSQAGSFFLVHVATPLEHCEQSDKRGIYAAARRGEIKGFTGVDDPYETPEKADLVVDFS-KQSVRSIVHEIILV  563 (573)
T ss_dssp             HHHHHHHHTTSEEEEEEECCCHHHHHHHCSSCHHHHHHTTSSSSCBTTTBCCCCCSSCSEEECTT-TSCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCeEEEEEeCCHHHHHHHhcccchhhhhHHHHHHHHhccccccccCCCCEEEECC-CCCHHHHHHHHHHH
Confidence            8888877652 466799999999999999999998888888999999999999998899999995 678888887 7665


Q ss_pred             c
Q 024315          268 L  268 (269)
Q Consensus       268 ~  268 (269)
                      |
T Consensus       564 l  564 (573)
T 1m8p_A          564 L  564 (573)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=99.90  E-value=1.7e-24  Score=210.42  Aligned_cols=226  Identities=34%  Similarity=0.512  Sum_probs=140.4

Q ss_pred             Cccccccccceeeccccccccccchhhhcccccccccccccccccccce-EEee-CceeeccCcce--ecCCCeEEEEEc
Q 024315           34 GFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNI-LWHK-NSVDKRDRQQL--LQQKGCVIWITG  109 (269)
Q Consensus        34 ~~~~~~~~~~f~~idr~~~~~~~~~~~~~~~~~gagmi~~~~~~~~~~~-~~~~-~~v~~~~r~sl--~~~~g~~i~l~G  109 (269)
                      +|.-++.+|+|+++|+.+|.+      ....++|+.+.....  ...++ .|.. ..+....+..+  .+++|++++|+|
T Consensus       305 ~~~y~~~~g~~~~~d~~~~~~------~~~~isgt~ir~~Lr--~G~~~p~~f~~peV~~vLR~~~~~~~~~G~iI~LiG  376 (552)
T 3cr8_A          305 RMVYVEDRAEHLPEAEAPQGA------RLLTLSGEEFQRRMR--AGLKIPEWYSFPEVLAELHRQTPPRERQGFTVFFTG  376 (552)
T ss_dssp             CEEEEGGGTEEEEGGGSCTTC------CEECCCHHHHHHHHT--TTCCCCTTTSCHHHHHHHHHHSCCGGGSCEEEEEEE
T ss_pred             ceEEecCCCeEEecccCCCCc------ccccCCHHHHHHHHh--cCCCCCccccccchhhhhhhhcccccccceEEEEEC
Confidence            788899999999999999952      112355555554322  22222 2332 23444444443  688999999999


Q ss_pred             CCCChHHHHHHHHHHhhccCCccEE-EECCeecCcccccCCCCChhhHHHHHHHHHHHHHHHHhCCcceeeccCChHHHH
Q 024315          110 LSGSGKSTLACALSQALHWRGKLTY-ILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKD  188 (269)
Q Consensus       110 ~sGsGKSTla~~L~~~l~~~~~g~i-~l~g~~~~~~l~~~~g~~~~~~~~~~~~l~~~a~~~~~~g~~~iv~~~~~~~~~  188 (269)
                      +||||||||+++|++.+.+.+.+.+ ++++++++..+...++++.+++..+++++..+...+...+..++.....+....
T Consensus       377 ~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l~~~~~ivi~~~~~~~~~~  456 (552)
T 3cr8_A          377 LSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEITKNRGIAICAPIAPYRQT  456 (552)
T ss_dssp             SSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHHHHTTCEEEECCCCCCHHH
T ss_pred             CCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHhcCCEEEEecCCccHHH
Confidence            9999999999999999964432345 699998876566677888877766666666666655556666665555544566


Q ss_pred             HHHHHHhCCCC-CccEEEEeCChhHHHhcChhhHHHHHhcCccccccccccccCCCCCCCeEEEcCCCcCHHHHHH-HHh
Q 024315          189 RDACRSMLPEG-DFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEVGVHVWYRFELAETWR-ITK  266 (269)
Q Consensus       189 r~~ar~ll~~~-~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~~i~~~~e~p~~~e~~id~~~~~~~~~~~~-i~~  266 (269)
                      ++.+++++... ++..||+++|++.|.+|+++++|...+.+++..+.+++.+||+|..++++|||+ ..+++++.. |.+
T Consensus       457 r~~~r~lL~~~g~f~~V~L~~~~e~~~~R~~r~l~~~~~~~~i~~l~~~r~~~e~P~~adl~Idt~-~~s~~e~v~~Il~  535 (552)
T 3cr8_A          457 RRDVRAMIEAVGGFVEIHVATPIETCESRDRKGLYAKARAGLIPEFTGVSDPYEVPETPELAIDTT-GLAIDEAVQQILL  535 (552)
T ss_dssp             HHHHHHHHHTTSEEEEEEECC-----------------------------CCCCCCSSCSEEECCS-SCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCEEEEEEcCCHHHHHHhccccccccccHhHHHHHHhccccccCCCCCCEEEECC-CCCHHHHHHHHHH
Confidence            66777777654 467799999999999999999998778888999999999999999999999995 667887776 777


Q ss_pred             hc
Q 024315          267 WL  268 (269)
Q Consensus       267 ~~  268 (269)
                      +|
T Consensus       536 ~L  537 (552)
T 3cr8_A          536 KL  537 (552)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=99.86  E-value=3.9e-21  Score=188.69  Aligned_cols=190  Identities=48%  Similarity=0.865  Sum_probs=149.7

Q ss_pred             cccceEEeeCceeeccCcceecC----CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCCh
Q 024315           78 KSTNILWHKNSVDKRDRQQLLQQ----KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKA  153 (269)
Q Consensus        78 ~~~~~~~~~~~v~~~~r~sl~~~----~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~  153 (269)
                      +..|+.|+...+++.+|..+..|    +|.+|+|+|.+||||||+++.|+..|...+...+.++++.++..+....++..
T Consensus        24 ~~~~~~~~~~~v~~~~r~~~~~~~~~~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~~~~fs~  103 (630)
T 1x6v_B           24 RATNVTYQAHHVSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSP  103 (630)
T ss_dssp             ----------CCCHHHHHHHSSSSSSCCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTTTCCSSH
T ss_pred             ccccccccccCCCHHHHHHHhCCCccCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCccccCCh
Confidence            34689999999999999988887    89999999999999999999999998655566889999999888877777887


Q ss_pred             hhHHHHHHHHHHHHHHHHhCCcceeeccCChHHHHHHHHHHhCCCC--CccEEEEeCChhHHHhcChhhHHHHHhcCccc
Q 024315          154 EDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEG--DFIEVFMDVPLQVCEARDPKGLYKLAREGKVK  231 (269)
Q Consensus       154 ~~~~~~~~~l~~~a~~~~~~g~~~iv~~~~~~~~~r~~ar~ll~~~--~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~  231 (269)
                      +++.+.++++.+++..+.+.|.+++.++.++++..++.+++++...  ++..|++|+|.++|.+|..+++|+..|.+++.
T Consensus       104 ~dree~~r~i~eva~~~l~~G~iVI~d~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~r~ly~~aR~~~~~  183 (630)
T 1x6v_B          104 EDREENVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIK  183 (630)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEEEEECCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCTTSHHHHHTTC---
T ss_pred             hhhHHHHHHHHHHHHHHHhCCCEEEEeCchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhccccchhhhhhhHH
Confidence            8888888888777777778898888887777766777777776543  46779999999999999999999888888888


Q ss_pred             cccccccccCCCCCCCeEEEcCCCcCHHHHHH-HHhhc
Q 024315          232 GFTGIDDPYEPPLNCEVGVHVWYRFELAETWR-ITKWL  268 (269)
Q Consensus       232 ~~~~i~~~~e~p~~~e~~id~~~~~~~~~~~~-i~~~~  268 (269)
                      .+.+++..|+.|..++++|||+ ..+++++.. |.++|
T Consensus       184 ~~~~~~~~Ye~p~~~dlvIDts-~~s~eevv~~Il~~L  220 (630)
T 1x6v_B          184 GFTGIDSEYEKPEAPELVLKTD-SCDVNDCVQQVVELL  220 (630)
T ss_dssp             -CBTTTBCCCCCSSCSEEEETT-SSCHHHHHHHHHHHH
T ss_pred             HHHHhhhhhcccCCCcEEEECC-CCCHHHHHHHHHHHH
Confidence            8999999999998899999995 567888887 77665

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=99.85  E-value=4.8e-21  Score=186.12  Aligned_cols=227  Identities=39%  Similarity=0.667  Sum_probs=160.8

Q ss_pred             Cccccccccceeecccccc-ccccchhhhcccccccccccccccccccce-EEee-CceeeccCcce--ecCCCeEEEEE
Q 024315           34 GFFNVSRLRSLQPIKALEE-SATASVVQESAAISGNNLCQNSTVAKSTNI-LWHK-NSVDKRDRQQL--LQQKGCVIWIT  108 (269)
Q Consensus        34 ~~~~~~~~~~f~~idr~~~-~~~~~~~~~~~~~~gagmi~~~~~~~~~~~-~~~~-~~v~~~~r~sl--~~~~g~~i~l~  108 (269)
                      +|..++.+|+|+++|+.+| .+.      ...+||+- ++...+....++ .|.. ..|....|..+  ..+.+.+++|+
T Consensus       306 ~~~y~~~~g~~i~id~~~~~~~~------~~~iSgt~-iR~~~L~~g~~~p~~~~r~eV~~~lr~~~~~~~~~~~~I~l~  378 (546)
T 2gks_A          306 ELVYVPELDQYVEINEAKKRNLK------YINISGTE-IRENFLKQGRKLPEWFTRPEVAEILAETYVPKHKQGFCVWLT  378 (546)
T ss_dssp             CCEEETTTTEEECSCC----------------------CTHHHHTTTCCCCTTTSCHHHHHHHHHHSCCGGGCCEEEEEE
T ss_pred             ceEEEcCCCeEEeeeccCCCCce------eeecchhh-hhhhhhcCCCCCCccccchhHHHHHHHhhccccccceEEEcc
Confidence            8999999999999999998 321      11245543 332201112222 3432 34555555555  56778999999


Q ss_pred             cCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHHHHHHHHHHHHHhCCcceeeccCChHHHH
Q 024315          109 GLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKD  188 (269)
Q Consensus       109 G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~l~~~a~~~~~~g~~~iv~~~~~~~~~  188 (269)
                      |++||||||+++.|+..+...|....++++|.+++.+..+.+|...++..+++++..+...+...|..++++...+++..
T Consensus       379 G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l~~~~~f~~~er~~~l~~i~~~~~~~l~~G~~VI~d~~~~~~~~  458 (546)
T 2gks_A          379 GLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSRGLGFSKEDRITNILRVGFVASEIVKHNGVVICALVSPYRSA  458 (546)
T ss_dssp             CSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHTCTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCCCHHH
T ss_pred             CCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhhcccccccHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCCCHHH
Confidence            99999999999999998876666678999999887777777888888877777766666666677887888777777777


Q ss_pred             HHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCccccccccccccCCCCCCCeEEEcCCCcCHHHHHH-HHhh
Q 024315          189 RDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEVGVHVWYRFELAETWR-ITKW  267 (269)
Q Consensus       189 r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~~i~~~~e~p~~~e~~id~~~~~~~~~~~~-i~~~  267 (269)
                      |+.+++++...++..|++++|.+.|.+|..++++...+.+.+..+.++++.|+.|..++++||++ ..+++++.. |.++
T Consensus       459 r~~~~~~l~~~d~~vV~L~~~~e~~~~Rl~r~~~~~~~~~~i~~~~~vr~~~e~~~~adivIDts-~~s~eev~~~I~~~  537 (546)
T 2gks_A          459 RNQVRNMMEEGKFIEVFVDAPVEVCEERDVKGLYKKAKEGLIKGFTGVDDPYEPPVAPEVRVDTT-KLTPEESALKILEF  537 (546)
T ss_dssp             HHHHHTTSCTTCEEEEEEECCGGGHHHHCCSSHHHHC------CCBTTTBCCCCCSSCSEEEETT-TSCHHHHHHHHHHH
T ss_pred             HHHHHHHhhcCCEEEEEEeCCHHHHHHHhhccccccccHHHHHHHHhhhhccccccCCcEEEECC-CCCHHHHHHHHHHH
Confidence            88888888766666799999999999999888876656667777888888999888889999995 567888877 7776


Q ss_pred             c
Q 024315          268 L  268 (269)
Q Consensus       268 ~  268 (269)
                      |
T Consensus       538 L  538 (546)
T 2gks_A          538 L  538 (546)
T ss_dssp             H
T ss_pred             H
Confidence            5

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=99.80  E-value=3.8e-19  Score=151.79  Aligned_cols=187  Identities=53%  Similarity=0.856  Sum_probs=140.4

Q ss_pred             ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhc-cCCccEEEECCeecCcccccCCCCChhhHHHH
Q 024315           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDNCRHGLNRDLSFKAEDRVEN  159 (269)
Q Consensus        81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~-~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~  159 (269)
                      +..|+...++...|..+..++|.+++|+|++||||||+++.|++.+. ..|...++++++.++..+....++...++...
T Consensus         4 ~~~~~~~~~~~~~r~~~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~~l~~~~~~~~~~r~~~   83 (211)
T 1m7g_A            4 NITFHASALTRSERTELRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGFSEADRNEN   83 (211)
T ss_dssp             CCCHHHHCCCHHHHHHHHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTTTTCCSSHHHHHHH
T ss_pred             cccccccccCHHHhhcccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhhhhccccCCCHHHHHHH
Confidence            45677667888888899999999999999999999999999999885 22333889999988876665556766666666


Q ss_pred             HHHHHHHHHHHHhCCcceeeccCChHHHHHHHHHHhCC---C-----CCccEEEEeCChhHHHhcChhhHHHHHhcCccc
Q 024315          160 IRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLP---E-----GDFIEVFMDVPLQVCEARDPKGLYKLAREGKVK  231 (269)
Q Consensus       160 ~~~l~~~a~~~~~~g~~~iv~~~~~~~~~r~~ar~ll~---~-----~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~  231 (269)
                      ++.+...+......|..++.++.+.++..++.++.+..   .     .+...|++|+|.+.+.+|..+.++...+++...
T Consensus        84 ~~~~~~~~~~~l~~g~~VI~d~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~~r~~~~~~r~~~~~  163 (211)
T 1m7g_A           84 IRRIAEVAKLFADSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDPKGLYKKAREGVIK  163 (211)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCTTCHHHHHHHTSSS
T ss_pred             HHHHHHHHHHHHHCCCEEEEecCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhhhHHHHHHHHhcchh
Confidence            66555444444456766777766555556666666543   1     234568999999999999877777777777766


Q ss_pred             cccccccccCCCCCCCeEEEcCCCcCHHHHHH-HHhhc
Q 024315          232 GFTGIDDPYEPPLNCEVGVHVWYRFELAETWR-ITKWL  268 (269)
Q Consensus       232 ~~~~i~~~~e~p~~~e~~id~~~~~~~~~~~~-i~~~~  268 (269)
                      .+..+...|++|..++++||++ ..+++++.. |.++|
T Consensus       164 ~~~~~~~~y~~~~~~~~~IDt~-~~s~eev~~~I~~~l  200 (211)
T 1m7g_A          164 EFTGISAPYEAPANPEVHVKNY-ELPVQDAVKQIIDYL  200 (211)
T ss_dssp             SCBTTTBCCCCCSSCSEEEECS-SSCHHHHHHHHHHHH
T ss_pred             hhhhhhhhccCCCCCeEEEECC-CCCHHHHHHHHHHHH
Confidence            6677778899888888999994 557888877 76654

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=99.78  E-value=3.3e-18  Score=142.80  Aligned_cols=172  Identities=37%  Similarity=0.652  Sum_probs=126.9

Q ss_pred             ceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHHHHHHHHHHHHHhCCc
Q 024315           96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGV  175 (269)
Q Consensus        96 sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~l~~~a~~~~~~g~  175 (269)
                      .+..++|.+++|+|++||||||+++.|++.+...+...++++++.++..+....++...++...+..+...+..+...|.
T Consensus         7 ~~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~g~   86 (186)
T 2yvu_A            7 YKCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSEGAGFTREERLRHLKRIAWIARLLARNGV   86 (186)
T ss_dssp             -CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             ccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHhCCC
Confidence            34456899999999999999999999999987555556688888887766666778887777666665555555556677


Q ss_pred             ceeeccCChHHHHHHHHHHhCCC--CCccEEEEeCChhHHHhcChhhHHHHHhcCccccccccccccCCCCCCCeEEEcC
Q 024315          176 ICIACLISPYRKDRDACRSMLPE--GDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEVGVHVW  253 (269)
Q Consensus       176 ~~iv~~~~~~~~~r~~ar~ll~~--~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~~i~~~~e~p~~~e~~id~~  253 (269)
                      .++.+....++..++.+++++..  .++..||+++|.+.+.+|..++++...+...+..+..+.+.|++|..++++||++
T Consensus        87 ~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~Id~~  166 (186)
T 2yvu_A           87 IVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDPKGLYKKALKGELENFTGITDPYEPPENPQLVLDTE  166 (186)
T ss_dssp             EEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCHHHHHHHHHTTCCSSCHHHHSCCCCCSSCSEEEETT
T ss_pred             EEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhhhhhhhHHhhcchhhhhhhhhcccCCCCCcEEEECC
Confidence            66766655555556655555442  2456689999999999999777665555556666666777899887789999984


Q ss_pred             CCcCHHHHHH-HHhhc
Q 024315          254 YRFELAETWR-ITKWL  268 (269)
Q Consensus       254 ~~~~~~~~~~-i~~~~  268 (269)
                       ..+++++.. |.++|
T Consensus       167 -~~~~~ev~~~I~~~l  181 (186)
T 2yvu_A          167 -SNTIEHNVSYLYSLV  181 (186)
T ss_dssp             -TSCHHHHHHHHHHHH
T ss_pred             -CCCHHHHHHHHHHHH
Confidence             467888776 66654

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=99.77  E-value=1.2e-17  Score=138.60  Aligned_cols=168  Identities=51%  Similarity=0.898  Sum_probs=124.2

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHHHHHHHHHHHHHhCCcceee
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIA  179 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~l~~~a~~~~~~g~~~iv  179 (269)
                      ++|.+++|+|++||||||+++.|++.+...|...+.++++.+++.+....++..+++...++++...+..+.+.+...+.
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCIT   82 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHhhccccccccHHHHHHHHHHHHHHHHHCCCEEEE
Confidence            57999999999999999999999998855444578889988887766667787777777777766555556566766665


Q ss_pred             ccCChHHHHHHHHHHhCCC--CCccEEEEeCChhHHHhcChhhHHHHHhcCccccccccccccCCCCCCCeEEEcCCCcC
Q 024315          180 CLISPYRKDRDACRSMLPE--GDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEVGVHVWYRFE  257 (269)
Q Consensus       180 ~~~~~~~~~r~~ar~ll~~--~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~~i~~~~e~p~~~e~~id~~~~~~  257 (269)
                      ...+++...+..++.++..  ..+..+++++|.+.+.+|..++++...+.+.+..+..+...|+.|..++++||++ ..+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vid~~-~~~  161 (179)
T 2pez_A           83 SFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDSEYEKPEAPELVLKTD-SCD  161 (179)
T ss_dssp             ECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCTTSHHHHHHTTSSCSCBTTTBCCCCCSSCSEEEETT-TSC
T ss_pred             ecCCcchHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHHHhhhhHHHHhcccccccccCCccccCCCCCcEEEECC-CCC
Confidence            5555554444444443321  2345689999999999999888887777777766666777888888889999985 567


Q ss_pred             HHHHHH-HHhhc
Q 024315          258 LAETWR-ITKWL  268 (269)
Q Consensus       258 ~~~~~~-i~~~~  268 (269)
                      ++++.. |.++|
T Consensus       162 ~~~~~~~i~~~l  173 (179)
T 2pez_A          162 VNDCVQQVVELL  173 (179)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            887776 65543

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.68  E-value=1.4e-16  Score=147.13  Aligned_cols=141  Identities=17%  Similarity=0.248  Sum_probs=101.6

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC----c--ccccCCCCCh
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR----H--GLNRDLSFKA  153 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~----~--~l~~~~g~~~  153 (269)
                      .++++.+......++++|.+++|++++|+||||||||||+++|+|++ .+.+|.|.++|.++.    .  ..++.++|..
T Consensus         8 ~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~-~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vf   86 (359)
T 3fvq_A            8 GHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFE-QPDSGEISLSGKTIFSKNTNLPVRERRLGYLV   86 (359)
T ss_dssp             EEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSS-CCSEEEEEETTEEEESSSCBCCGGGSCCEEEC
T ss_pred             EeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCC-CCCCcEEEECCEECcccccccchhhCCEEEEe
Confidence            56777888888899999999999999999999999999999999988 567999999998872    1  1122233332


Q ss_pred             hhH--------HHHHH------------HHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeC
Q 024315          154 EDR--------VENIR------------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDV  208 (269)
Q Consensus       154 ~~~--------~~~~~------------~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~  208 (269)
                      |+.        .+++.            ....+...+...++..    .+..+|++++|| .++|+++.+|++  +++||
T Consensus        87 Q~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~l--LLLDE  164 (359)
T 3fvq_A           87 QEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPEL--ILLDE  164 (359)
T ss_dssp             TTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE--EEEES
T ss_pred             CCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEeC
Confidence            211        11110            0011222333334432    345567888888 699999999999  99999


Q ss_pred             ChhHHHhcChhhHHH
Q 024315          209 PLQVCEARDPKGLYK  223 (269)
Q Consensus       209 p~~~l~~R~~k~l~~  223 (269)
                      |+..++...++.+..
T Consensus       165 Pts~LD~~~r~~l~~  179 (359)
T 3fvq_A          165 PFSALDEQLRRQIRE  179 (359)
T ss_dssp             TTTTSCHHHHHHHHH
T ss_pred             CcccCCHHHHHHHHH
Confidence            999999988877654

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.66  E-value=1.8e-16  Score=147.41  Aligned_cols=143  Identities=17%  Similarity=0.113  Sum_probs=103.1

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--ccccCCCCChhhH-
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--GLNRDLSFKAEDR-  156 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--~l~~~~g~~~~~~-  156 (269)
                      .++++.++.+.+.++++|.+++|++++|+||||||||||+++|+|++ .+.+|.|.++|.++..  ...+.++|..|+. 
T Consensus         7 ~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~-~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~   85 (381)
T 3rlf_A            7 QNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE-TITSGDLFIGEKRMNDTPPAERGVGMVFQSYA   85 (381)
T ss_dssp             EEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS-CCSEEEEEETTEECTTCCGGGSCEEEECTTCC
T ss_pred             EeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCC-CCCCeEEEECCEECCCCCHHHCCEEEEecCCc
Confidence            56777888888899999999999999999999999999999999988 5679999999998752  1112223222211 


Q ss_pred             -------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhH
Q 024315          157 -------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV  212 (269)
Q Consensus       157 -------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~  212 (269)
                             .+++..            ...+..++...++..    .+..+|++++|| .++|+++.++++  +++|||+..
T Consensus        86 l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~l--LLLDEPts~  163 (381)
T 3rlf_A           86 LYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSV--FLLDEPLSN  163 (381)
T ss_dssp             CCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSE--EEEESTTTT
T ss_pred             CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCE--EEEECCCcC
Confidence                   111100            012233444445433    345567888888 699999999999  999999999


Q ss_pred             HHhcChhhHHHHH
Q 024315          213 CEARDPKGLYKLA  225 (269)
Q Consensus       213 l~~R~~k~l~~~~  225 (269)
                      ++...++.+.+.+
T Consensus       164 LD~~~~~~l~~~l  176 (381)
T 3rlf_A          164 LDAALRVQMRIEI  176 (381)
T ss_dssp             SCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH
Confidence            9998887765443

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.65  E-value=3.1e-16  Score=144.69  Aligned_cols=153  Identities=15%  Similarity=0.181  Sum_probs=106.4

Q ss_pred             ccccccccccccccccceEEee-CceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc
Q 024315           65 ISGNNLCQNSTVAKSTNILWHK-NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH  143 (269)
Q Consensus        65 ~~gagmi~~~~~~~~~~~~~~~-~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~  143 (269)
                      -.|+.|+..      .++++.+ ......++++|.+++|++++|+||||||||||+++|+|++ .+.+|.|.++|.++..
T Consensus         9 ~~~~~~l~~------~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-~p~~G~I~i~g~~i~~   81 (355)
T 1z47_A            9 HHGSMTIEF------VGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLE-RPTKGDVWIGGKRVTD   81 (355)
T ss_dssp             --CCEEEEE------EEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS-CCSEEEEEETTEECTT
T ss_pred             cCCCceEEE------EEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCC-CCCccEEEECCEECCc
Confidence            345555543      4666666 5556678899999999999999999999999999999988 5679999999988742


Q ss_pred             --ccccCCCCChhhH--------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhC
Q 024315          144 --GLNRDLSFKAEDR--------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSML  196 (269)
Q Consensus       144 --~l~~~~g~~~~~~--------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll  196 (269)
                        ..++.++|..|+.        .+++..            ...+...+...++..    .+..+|+++++| ..+++++
T Consensus        82 ~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~  161 (355)
T 1z47_A           82 LPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALA  161 (355)
T ss_dssp             CCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHT
T ss_pred             CChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHH
Confidence              1122333333321        111110            012233444555533    244567888888 6999999


Q ss_pred             CCCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315          197 PEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       197 ~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      .++++  +++|||+..++...++.+.+.++
T Consensus       162 ~~P~l--LLLDEP~s~LD~~~r~~l~~~l~  189 (355)
T 1z47_A          162 PRPQV--LLFDEPFAAIDTQIRRELRTFVR  189 (355)
T ss_dssp             TCCSE--EEEESTTCCSSHHHHHHHHHHHH
T ss_pred             cCCCE--EEEeCCcccCCHHHHHHHHHHHH
Confidence            99999  99999999999988887665443

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.65  E-value=2.2e-16  Score=140.08  Aligned_cols=144  Identities=17%  Similarity=0.182  Sum_probs=101.2

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC---c---ccccCCCCC-
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR---H---GLNRDLSFK-  152 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~---~---~l~~~~g~~-  152 (269)
                      .++.+.+......++++|.+++|++++|+||||||||||+++|++++ .+.+|.|.++|.++.   .   .+++.++|. 
T Consensus        28 ~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~-~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~  106 (263)
T 2olj_A           28 HQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLE-DFDEGEIIIDGINLKAKDTNLNKVREEVGMVF  106 (263)
T ss_dssp             EEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEETTEESSSTTCCHHHHHHHEEEEC
T ss_pred             EeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCC-CCCCcEEEECCEECCCccccHHHHhCcEEEEe
Confidence            46677776666788899999999999999999999999999999988 467899999998763   1   011112221 


Q ss_pred             ----------hhhHHHHHH----------HHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEe
Q 024315          153 ----------AEDRVENIR----------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMD  207 (269)
Q Consensus       153 ----------~~~~~~~~~----------~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld  207 (269)
                                ..+......          ....+...+...++..    .+..+++++++| ..+++++.++++  +++|
T Consensus       107 Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~l--llLD  184 (263)
T 2olj_A          107 QRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKI--MLFD  184 (263)
T ss_dssp             SSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE--EEEE
T ss_pred             CCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCE--EEEe
Confidence                      111111100          0012233455555533    234567777777 699999999999  9999


Q ss_pred             CChhHHHhcChhhHHHHHh
Q 024315          208 VPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       208 ~p~~~l~~R~~k~l~~~~r  226 (269)
                      ||+..++....+.+.+.++
T Consensus       185 EPts~LD~~~~~~~~~~l~  203 (263)
T 2olj_A          185 EPTSALDPEMVGEVLSVMK  203 (263)
T ss_dssp             STTTTSCHHHHHHHHHHHH
T ss_pred             CCcccCCHHHHHHHHHHHH
Confidence            9999999988887665543

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.64  E-value=5.6e-16  Score=133.49  Aligned_cols=142  Identities=18%  Similarity=0.191  Sum_probs=99.2

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChh-----
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE-----  154 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~-----  154 (269)
                      .++++.+.. ...+.+++.+++|++++|+||||||||||+++|++.+ .+.+|.|.++|.++. ..+..++|.+|     
T Consensus        14 ~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~-~p~~G~I~~~g~~~~-~~~~~i~~v~q~~~~~   90 (214)
T 1sgw_A           14 RDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYL-KPLKGEIIYNGVPIT-KVKGKIFFLPEEIIVP   90 (214)
T ss_dssp             EEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEETTEEGG-GGGGGEEEECSSCCCC
T ss_pred             EEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCeEEEECCEEhh-hhcCcEEEEeCCCcCC
Confidence            456666666 6788899999999999999999999999999999988 467899999998753 11111222111     


Q ss_pred             ---hHHHHHHH----------HHHHHHHHHhCCcce---eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcC
Q 024315          155 ---DRVENIRR----------IGEVAKLFADAGVIC---IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD  217 (269)
Q Consensus       155 ---~~~~~~~~----------l~~~a~~~~~~g~~~---iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~  217 (269)
                         ...+++..          ...+...+...++..   .+...++++++| ..+++++.++++  +++|||+..++...
T Consensus        91 ~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~l--llLDEPts~LD~~~  168 (214)
T 1sgw_A           91 RKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEI--YVLDDPVVAIDEDS  168 (214)
T ss_dssp             TTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSE--EEEESTTTTSCTTT
T ss_pred             CCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCE--EEEECCCcCCCHHH
Confidence               11111111          011223344445432   233457777777 689999999999  99999999999999


Q ss_pred             hhhHHHHHh
Q 024315          218 PKGLYKLAR  226 (269)
Q Consensus       218 ~k~l~~~~r  226 (269)
                      .+.+.+.++
T Consensus       169 ~~~l~~~l~  177 (214)
T 1sgw_A          169 KHKVLKSIL  177 (214)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888766554

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.63  E-value=3.4e-16  Score=138.70  Aligned_cols=144  Identities=21%  Similarity=0.226  Sum_probs=101.2

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----------------
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----------------  143 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----------------  143 (269)
                      .++++.++.....+++++.+++|++++|+||||||||||+++|++++ .+.+|.|.++|.++..                
T Consensus        10 ~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~   88 (262)
T 1b0u_A           10 IDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLE-KPSEGAIIVNGQNINLVRDKDGQLKVADKNQL   88 (262)
T ss_dssp             EEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEETTEECCEEECTTSSEEESCHHHH
T ss_pred             eeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEEccccccccccccccChhhH
Confidence            46677776667788899999999999999999999999999999988 4678999999987641                


Q ss_pred             -ccccCCCCChhh--------HHHHHHH-------------HHHHHHHHHhCCccee-----eccCChHHHHH-HHHHHh
Q 024315          144 -GLNRDLSFKAED--------RVENIRR-------------IGEVAKLFADAGVICI-----ACLISPYRKDR-DACRSM  195 (269)
Q Consensus       144 -~l~~~~g~~~~~--------~~~~~~~-------------l~~~a~~~~~~g~~~i-----v~~~~~~~~~r-~~ar~l  195 (269)
                       .++..++|.+|+        -.+++..             ...+...+...++...     +...|+++++| ..++++
T Consensus        89 ~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL  168 (262)
T 1b0u_A           89 RLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARAL  168 (262)
T ss_dssp             HHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHH
T ss_pred             HHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHH
Confidence             011112222111        1111110             0122334555555332     34467777777 699999


Q ss_pred             CCCCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315          196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       196 l~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      +.++++  +++|||+..++....+.+.+.++
T Consensus       169 ~~~p~l--llLDEPts~LD~~~~~~~~~~l~  197 (262)
T 1b0u_A          169 AMEPDV--LLFDEPTSALDPELVGEVLRIMQ  197 (262)
T ss_dssp             HTCCSE--EEEESTTTTSCHHHHHHHHHHHH
T ss_pred             hcCCCE--EEEeCCCccCCHHHHHHHHHHHH
Confidence            999999  99999999999988887665543

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=99.63  E-value=2.6e-16  Score=140.53  Aligned_cols=144  Identities=17%  Similarity=0.169  Sum_probs=101.5

Q ss_pred             cceEEeeCc-eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc------ccccCCCCC
Q 024315           80 TNILWHKNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH------GLNRDLSFK  152 (269)
Q Consensus        80 ~~~~~~~~~-v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~------~l~~~~g~~  152 (269)
                      .++++.+.. ....+++++++++|++++|+||||||||||+++|+|++ .+.+|.|.++|.++..      .+++.++|.
T Consensus        11 ~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~-~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v   89 (275)
T 3gfo_A           11 EELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGIL-KPSSGRILFDNKPIDYSRKGIMKLRESIGIV   89 (275)
T ss_dssp             EEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEETTEECCCSHHHHHHHHHSEEEE
T ss_pred             EEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC-CCCCeEEEECCEECCcccccHHHHhCcEEEE
Confidence            466666643 44778899999999999999999999999999999988 4679999999988731      122233333


Q ss_pred             hhhH---------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEE
Q 024315          153 AEDR---------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFM  206 (269)
Q Consensus       153 ~~~~---------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~l  206 (269)
                      +|+.         .+++..            ...+...+...++..    .+..+|+++++| .++++++.++++  +++
T Consensus        90 ~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~l--LlL  167 (275)
T 3gfo_A           90 FQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKV--LIL  167 (275)
T ss_dssp             CSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSE--EEE
T ss_pred             EcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCE--EEE
Confidence            3211         111110            012233444555533    244567777777 699999999999  999


Q ss_pred             eCChhHHHhcChhhHHHHHh
Q 024315          207 DVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       207 d~p~~~l~~R~~k~l~~~~r  226 (269)
                      |||+..++....+.+.+.++
T Consensus       168 DEPts~LD~~~~~~i~~~l~  187 (275)
T 3gfo_A          168 DEPTAGLDPMGVSEIMKLLV  187 (275)
T ss_dssp             ECTTTTCCHHHHHHHHHHHH
T ss_pred             ECccccCCHHHHHHHHHHHH
Confidence            99999999988887665543

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.63  E-value=6.6e-16  Score=133.73  Aligned_cols=144  Identities=23%  Similarity=0.184  Sum_probs=101.1

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-------cc-cCCCC
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------LN-RDLSF  151 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-------l~-~~~g~  151 (269)
                      .++++.+......+++++.+++|++++|+||||||||||+++|++.+ .+.+|.|.++|.++...       ++ ..++|
T Consensus         8 ~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~   86 (224)
T 2pcj_A            8 ENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLD-APTEGKVFLEGKEVDYTNEKELSLLRNRKLGF   86 (224)
T ss_dssp             EEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSS-CCSEEEEEETTEECCSSCHHHHHHHHHHHEEE
T ss_pred             EeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEECCCCCHHHHHHHHhCcEEE
Confidence            46667776666788899999999999999999999999999999988 46789999999876421       11 11222


Q ss_pred             Ch-----------hhHHHHHH---------HHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEE
Q 024315          152 KA-----------EDRVENIR---------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFM  206 (269)
Q Consensus       152 ~~-----------~~~~~~~~---------~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~l  206 (269)
                      .+           .+......         ....+...+...++..    .+...|+++++| ..+++++.++++  +++
T Consensus        87 v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~l--llL  164 (224)
T 2pcj_A           87 VFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPIL--LFA  164 (224)
T ss_dssp             ECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSE--EEE
T ss_pred             EecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCE--EEE
Confidence            21           11111100         0012233455555533    234567777777 699999999999  999


Q ss_pred             eCChhHHHhcChhhHHHHHh
Q 024315          207 DVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       207 d~p~~~l~~R~~k~l~~~~r  226 (269)
                      |||+..++....+.+.+.++
T Consensus       165 DEPt~~LD~~~~~~~~~~l~  184 (224)
T 2pcj_A          165 DEPTGNLDSANTKRVMDIFL  184 (224)
T ss_dssp             ESTTTTCCHHHHHHHHHHHH
T ss_pred             eCCCCCCCHHHHHHHHHHHH
Confidence            99999999988887665543

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.63  E-value=9.3e-16  Score=135.53  Aligned_cols=144  Identities=13%  Similarity=0.132  Sum_probs=101.2

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc---cccCCCCChh--
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---LNRDLSFKAE--  154 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~---l~~~~g~~~~--  154 (269)
                      .++++.+......+.+++.+++|++++|+||||||||||+++|++.+ .+.+|.|.++|.++...   +++.++|.+|  
T Consensus        19 ~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~-~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~   97 (256)
T 1vpl_A           19 KDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLI-KPSSGIVTVFGKNVVEEPHEVRKLISYLPEEA   97 (256)
T ss_dssp             EEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEETTEETTTCHHHHHTTEEEECTTC
T ss_pred             EEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEECCccHHHHhhcEEEEcCCC
Confidence            46677776667788899999999999999999999999999999988 46789999999876421   1122222222  


Q ss_pred             ---------hHHHHHHHH---------HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChh
Q 024315          155 ---------DRVENIRRI---------GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQ  211 (269)
Q Consensus       155 ---------~~~~~~~~l---------~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~  211 (269)
                               +........         ..+...+...++..    .+...|+++++| ..+++++.++++  +++|||+.
T Consensus        98 ~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~l--llLDEPts  175 (256)
T 1vpl_A           98 GAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRL--AILDEPTS  175 (256)
T ss_dssp             CCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSE--EEEESTTT
T ss_pred             CCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEeCCcc
Confidence                     211111100         11223344445432    234567777777 699999999999  99999999


Q ss_pred             HHHhcChhhHHHHHh
Q 024315          212 VCEARDPKGLYKLAR  226 (269)
Q Consensus       212 ~l~~R~~k~l~~~~r  226 (269)
                      .++...++.+.+.++
T Consensus       176 ~LD~~~~~~l~~~l~  190 (256)
T 1vpl_A          176 GLDVLNAREVRKILK  190 (256)
T ss_dssp             TCCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHH
Confidence            999998888665544

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.63  E-value=9.8e-16  Score=141.71  Aligned_cols=144  Identities=18%  Similarity=0.173  Sum_probs=102.2

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--ccccCCCCChhh--
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--GLNRDLSFKAED--  155 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--~l~~~~g~~~~~--  155 (269)
                      .++++.+......++++|.+++|++++|+||||||||||+++|+|++ .+.+|.|.++|.++..  ..++.++|..|+  
T Consensus         7 ~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~   85 (362)
T 2it1_A            7 ENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIY-KPTSGKIYFDEKDVTELPPKDRNVGLVFQNWA   85 (362)
T ss_dssp             EEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS-CCSEEEEEETTEECTTSCGGGTTEEEECTTCC
T ss_pred             EeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCC-CCCceEEEECCEECCcCCHhHCcEEEEecCcc
Confidence            45666666666788899999999999999999999999999999988 4679999999988742  111222322221  


Q ss_pred             ------HHHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhH
Q 024315          156 ------RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV  212 (269)
Q Consensus       156 ------~~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~  212 (269)
                            -.+++..            ...+...+...++..    .+..+|+++++| ..+++++.++++  +++|||+..
T Consensus        86 l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~l--LLLDEP~s~  163 (362)
T 2it1_A           86 LYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEV--LLLDEPLSN  163 (362)
T ss_dssp             CCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSE--EEEESGGGG
T ss_pred             cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCE--EEEECcccc
Confidence                  0111110            012233444455533    244567888888 699999999999  999999999


Q ss_pred             HHhcChhhHHHHHh
Q 024315          213 CEARDPKGLYKLAR  226 (269)
Q Consensus       213 l~~R~~k~l~~~~r  226 (269)
                      ++...++.+.+.++
T Consensus       164 LD~~~r~~l~~~l~  177 (362)
T 2it1_A          164 LDALLRLEVRAELK  177 (362)
T ss_dssp             SCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH
Confidence            99998887665443

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.63  E-value=7.1e-16  Score=142.63  Aligned_cols=144  Identities=17%  Similarity=0.216  Sum_probs=101.2

Q ss_pred             cceEEeeC----ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-------ccccC
Q 024315           80 TNILWHKN----SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-------GLNRD  148 (269)
Q Consensus        80 ~~~~~~~~----~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-------~l~~~  148 (269)
                      .++++.+.    .+.+.+++||.+++|++++|+||||||||||+++|++++ .+.+|.|.++|.++..       .+++.
T Consensus        28 ~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~-~p~~G~I~i~G~~i~~~~~~~~~~~r~~  106 (366)
T 3tui_C           28 SNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE-RPTEGSVLVDGQELTTLSESELTKARRQ  106 (366)
T ss_dssp             EEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS-CCSEEEEEETTEECSSCCHHHHHHHHTT
T ss_pred             EeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCC-CCCceEEEECCEECCcCCHHHHHHHhCc
Confidence            35555552    356788999999999999999999999999999999988 5679999999998752       11233


Q ss_pred             CCCChhhH--------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccE
Q 024315          149 LSFKAEDR--------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIE  203 (269)
Q Consensus       149 ~g~~~~~~--------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~  203 (269)
                      ++|..|+.        .+++..            ...+..++...++..    .+..+|+++++| .++|+++.+|++  
T Consensus       107 Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~l--  184 (366)
T 3tui_C          107 IGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKV--  184 (366)
T ss_dssp             EEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSE--
T ss_pred             EEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCE--
Confidence            33333211        111110            012223344445432    344567888888 699999999999  


Q ss_pred             EEEeCChhHHHhcChhhHHHHHh
Q 024315          204 VFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       204 i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      +++|||+..++....+.+.+.++
T Consensus       185 LLlDEPTs~LD~~~~~~i~~lL~  207 (366)
T 3tui_C          185 LLCDQATSALDPATTRSILELLK  207 (366)
T ss_dssp             EEEESTTTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCccCCHHHHHHHHHHHH
Confidence            99999999999998887665544

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.63  E-value=7.5e-16  Score=142.33  Aligned_cols=143  Identities=17%  Similarity=0.112  Sum_probs=101.9

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--ccccCCCCChhh--
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--GLNRDLSFKAED--  155 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--~l~~~~g~~~~~--  155 (269)
                      .++++.+......++++|.+++|++++|+||||||||||+++|+|++ .+.+|.|.++|.++..  ..++.++|..|+  
T Consensus         7 ~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~   85 (359)
T 2yyz_A            7 VNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIY-KPTSGEIYFDDVLVNDIPPKYREVGMVFQNYA   85 (359)
T ss_dssp             EEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSS-CCSEEEEEETTEECTTSCGGGTTEEEECSSCC
T ss_pred             EEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCC-CCCccEEEECCEECCCCChhhCcEEEEecCcc
Confidence            46677777777888999999999999999999999999999999988 5679999999988742  111222222221  


Q ss_pred             ------HHHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhH
Q 024315          156 ------RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV  212 (269)
Q Consensus       156 ------~~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~  212 (269)
                            -.+++..            ...+...+...++..    .+..+|+++++| ..+++++.++++  +++|||+..
T Consensus        86 l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~l--LLLDEP~s~  163 (359)
T 2yyz_A           86 LYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKV--LLFDEPLSN  163 (359)
T ss_dssp             CCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE--EEEESTTTT
T ss_pred             cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEECCccc
Confidence                  0111110            012233444455533    244567888887 699999999999  999999999


Q ss_pred             HHhcChhhHHHHH
Q 024315          213 CEARDPKGLYKLA  225 (269)
Q Consensus       213 l~~R~~k~l~~~~  225 (269)
                      ++...++.+.+.+
T Consensus       164 LD~~~r~~l~~~l  176 (359)
T 2yyz_A          164 LDANLRMIMRAEI  176 (359)
T ss_dssp             SCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH
Confidence            9998887766544

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.63  E-value=5.8e-16  Score=142.82  Aligned_cols=144  Identities=17%  Similarity=0.159  Sum_probs=101.7

Q ss_pred             cceEEeeCcee--eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-------ccccCCC
Q 024315           80 TNILWHKNSVD--KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-------GLNRDLS  150 (269)
Q Consensus        80 ~~~~~~~~~v~--~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-------~l~~~~g  150 (269)
                      .++++.+....  ..++++|.+++|++++|+||||||||||+++|+|++ .+.+|.|.++|.++..       ..++.++
T Consensus         7 ~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig   85 (353)
T 1oxx_K            7 KNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLD-VPSTGELYFDDRLVASNGKLIVPPEDRKIG   85 (353)
T ss_dssp             EEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSS-CCSEEEEEETTEEEEETTEESSCGGGSCEE
T ss_pred             EeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCC-CCCceEEEECCEECcccccccCChhhCCEE
Confidence            45666666555  778899999999999999999999999999999988 5679999999987632       1122233


Q ss_pred             CChhhH--------HHHHH------------HHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEE
Q 024315          151 FKAEDR--------VENIR------------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVF  205 (269)
Q Consensus       151 ~~~~~~--------~~~~~------------~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~  205 (269)
                      |..|+.        .+++.            ....+...+...++..    .+..+|+++++| ..+++++.++++  ++
T Consensus        86 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~l--LL  163 (353)
T 1oxx_K           86 MVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSL--LL  163 (353)
T ss_dssp             EEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE--EE
T ss_pred             EEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCE--EE
Confidence            222211        11110            0112233444455533    244567888888 699999999999  99


Q ss_pred             EeCChhHHHhcChhhHHHHHh
Q 024315          206 MDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       206 ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      +|||+..++...++.+.+.++
T Consensus       164 LDEP~s~LD~~~r~~l~~~l~  184 (353)
T 1oxx_K          164 LDEPFSNLDARMRDSARALVK  184 (353)
T ss_dssp             EESTTTTSCGGGHHHHHHHHH
T ss_pred             EECCcccCCHHHHHHHHHHHH
Confidence            999999999999888665543

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.62  E-value=7e-16  Score=134.55  Aligned_cols=143  Identities=17%  Similarity=0.175  Sum_probs=98.3

Q ss_pred             ceEEeeC----ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc----c----ccC
Q 024315           81 NILWHKN----SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----L----NRD  148 (269)
Q Consensus        81 ~~~~~~~----~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~----l----~~~  148 (269)
                      ++++.+.    .....+++++.+++|++++|+||||||||||+++|++++ .+.+|.|.++|.++...    +    +..
T Consensus         6 ~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~-~p~~G~I~~~g~~~~~~~~~~~~~~~~~~   84 (235)
T 3tif_A            6 NVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLD-KPTEGEVYIDNIKTNDLDDDELTKIRRDK   84 (235)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS-CCSEEEEEETTEECTTCCHHHHHHHHHHH
T ss_pred             EEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCceEEEECCEEcccCCHHHHHHHhhcc
Confidence            4555543    245678899999999999999999999999999999988 56799999999876421    0    011


Q ss_pred             CCCChhh--------HHHHHH---------------HHHHHHHHHHhCCcce-----eeccCChHHHHH-HHHHHhCCCC
Q 024315          149 LSFKAED--------RVENIR---------------RIGEVAKLFADAGVIC-----IACLISPYRKDR-DACRSMLPEG  199 (269)
Q Consensus       149 ~g~~~~~--------~~~~~~---------------~l~~~a~~~~~~g~~~-----iv~~~~~~~~~r-~~ar~ll~~~  199 (269)
                      ++|.+|+        -.+++.               ....+...+...++..     .+..+|+++++| ..+++++.+|
T Consensus        85 i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p  164 (235)
T 3tif_A           85 IGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNP  164 (235)
T ss_dssp             EEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred             EEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCC
Confidence            2221111        011110               0112233444445432     245567788887 6999999999


Q ss_pred             CccEEEEeCChhHHHhcChhhHHHHHh
Q 024315          200 DFIEVFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       200 ~~~~i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      ++  +++|||+..++....+.+.+.++
T Consensus       165 ~l--lllDEPts~LD~~~~~~i~~~l~  189 (235)
T 3tif_A          165 PI--ILADQPTWALDSKTGEKIMQLLK  189 (235)
T ss_dssp             SE--EEEESTTTTSCHHHHHHHHHHHH
T ss_pred             CE--EEEeCCcccCCHHHHHHHHHHHH
Confidence            99  99999999999988888665543

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.62  E-value=9.7e-16  Score=142.25  Aligned_cols=143  Identities=16%  Similarity=0.128  Sum_probs=101.3

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--------ccccCCCC
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--------GLNRDLSF  151 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--------~l~~~~g~  151 (269)
                      .++++.+......++++|.+++|++++|+||||||||||+++|+|++ .+.+|.|.++|.++..        ..++.++|
T Consensus         7 ~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~   85 (372)
T 1g29_1            7 VDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLE-EPSRGQIYIGDKLVADPEKGIFVPPKDRDIAM   85 (372)
T ss_dssp             EEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS-CCSEEEEEETTEEEEEGGGTEECCGGGSSEEE
T ss_pred             EeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCC-CCCccEEEECCEECccccccccCCHhHCCEEE
Confidence            46677777777888999999999999999999999999999999988 4679999999987632        11122332


Q ss_pred             ChhhH--------HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEE
Q 024315          152 KAEDR--------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFM  206 (269)
Q Consensus       152 ~~~~~--------~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~l  206 (269)
                      ..|+.        .+++..            ...+...+...++..    .+..+|+++++| ..+++++.++++  +++
T Consensus        86 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~l--LLL  163 (372)
T 1g29_1           86 VFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQV--FLM  163 (372)
T ss_dssp             ECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSE--EEE
T ss_pred             EeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCE--EEE
Confidence            22210        111110            011223333444432    344567888888 699999999999  999


Q ss_pred             eCChhHHHhcChhhHHHHH
Q 024315          207 DVPLQVCEARDPKGLYKLA  225 (269)
Q Consensus       207 d~p~~~l~~R~~k~l~~~~  225 (269)
                      |||+..++...++.+...+
T Consensus       164 DEP~s~LD~~~r~~l~~~l  182 (372)
T 1g29_1          164 DEPLSNLDAKLRVRMRAEL  182 (372)
T ss_dssp             ECTTTTSCHHHHHHHHHHH
T ss_pred             CCCCccCCHHHHHHHHHHH
Confidence            9999999998887766544

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.62  E-value=9.5e-16  Score=142.28  Aligned_cols=144  Identities=17%  Similarity=0.151  Sum_probs=101.3

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--ccccCCCCChhhHH
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--GLNRDLSFKAEDRV  157 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--~l~~~~g~~~~~~~  157 (269)
                      .++.+.+......++++|.+++|++++|+||||||||||+++|+|++ .+.+|.|.++|.++..  ..++.++|..|+..
T Consensus        15 ~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~   93 (372)
T 1v43_A           15 ENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE-EPTEGRIYFGDRDVTYLPPKDRNISMVFQSYA   93 (372)
T ss_dssp             EEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS-CCSEEEEEETTEECTTSCGGGGTEEEEEC---
T ss_pred             EEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCC-CCCceEEEECCEECCCCChhhCcEEEEecCcc
Confidence            46777777777888999999999999999999999999999999988 5679999999988742  11122333332210


Q ss_pred             --------HHHH------------HHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhH
Q 024315          158 --------ENIR------------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV  212 (269)
Q Consensus       158 --------~~~~------------~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~  212 (269)
                              +++.            ....+...+...++..    .+..+|+++++| ..+++++.++++  +++|||+..
T Consensus        94 l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~l--LLLDEP~s~  171 (372)
T 1v43_A           94 VWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDV--LLMDEPLSN  171 (372)
T ss_dssp             ---CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSE--EEEESTTTT
T ss_pred             cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCE--EEEcCCCcc
Confidence                    1110            0012233444445433    233456666776 799999999999  999999999


Q ss_pred             HHhcChhhHHHHHh
Q 024315          213 CEARDPKGLYKLAR  226 (269)
Q Consensus       213 l~~R~~k~l~~~~r  226 (269)
                      ++...++.+.+.++
T Consensus       172 LD~~~r~~l~~~l~  185 (372)
T 1v43_A          172 LDAKLRVAMRAEIK  185 (372)
T ss_dssp             SCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH
Confidence            99988877664443

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.62  E-value=8.5e-16  Score=134.35  Aligned_cols=144  Identities=15%  Similarity=0.199  Sum_probs=98.4

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-----cccCCCCChh
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAE  154 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-----l~~~~g~~~~  154 (269)
                      .++++.+......+++++.+++|++++|+||||||||||+++|++.+ .+.+|.|.++|.++...     .+..++|.+|
T Consensus        10 ~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q   88 (240)
T 1ji0_A           10 QSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLV-RAQKGKIIFNGQDITNKPAHVINRMGIALVPE   88 (240)
T ss_dssp             EEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS-CCSEEEEEETTEECTTCCHHHHHHTTEEEECS
T ss_pred             EeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEECCCCCHHHHHhCCEEEEec
Confidence            46677776666788899999999999999999999999999999988 46799999999876421     0111222111


Q ss_pred             h--------HHHHHH----------HH-HHHHHHHHhCC-c----ceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCC
Q 024315          155 D--------RVENIR----------RI-GEVAKLFADAG-V----ICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVP  209 (269)
Q Consensus       155 ~--------~~~~~~----------~l-~~~a~~~~~~g-~----~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p  209 (269)
                      +        -.+++.          .. ..+..++...+ +    ...+...++++++| ..+++++.++++  +++|||
T Consensus        89 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~l--llLDEP  166 (240)
T 1ji0_A           89 GRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKL--LMMDEP  166 (240)
T ss_dssp             SCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSE--EEEECT
T ss_pred             CCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEcCC
Confidence            1        001110          00 01111222221 2    22344567777777 699999999999  999999


Q ss_pred             hhHHHhcChhhHHHHHh
Q 024315          210 LQVCEARDPKGLYKLAR  226 (269)
Q Consensus       210 ~~~l~~R~~k~l~~~~r  226 (269)
                      +..++....+.+.+.++
T Consensus       167 ts~LD~~~~~~l~~~l~  183 (240)
T 1ji0_A          167 SLGLAPILVSEVFEVIQ  183 (240)
T ss_dssp             TTTCCHHHHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHHH
Confidence            99999998888765544

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.61  E-value=7.2e-16  Score=137.86  Aligned_cols=144  Identities=18%  Similarity=0.156  Sum_probs=101.5

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC--c----ccccCCCCCh
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR--H----GLNRDLSFKA  153 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~--~----~l~~~~g~~~  153 (269)
                      .++++.+......++++|.+++|++++|+||||||||||+++|++.+ .+.+|.|.++|.++.  .    .+++.++|.+
T Consensus        25 ~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~-~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~  103 (279)
T 2ihy_A           25 DQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYE-PATSGTVNLFGKMPGKVGYSAETVRQHIGFVS  103 (279)
T ss_dssp             EEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEETTBCCC---CCHHHHHTTEEEEC
T ss_pred             EeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCCeEEEECCEEcccccCCHHHHcCcEEEEE
Confidence            46666666666788899999999999999999999999999999988 467899999997764  1    1122233332


Q ss_pred             hhH----------HHHHH----------------HHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCcc
Q 024315          154 EDR----------VENIR----------------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFI  202 (269)
Q Consensus       154 ~~~----------~~~~~----------------~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~  202 (269)
                      |+.          .+++.                ....+...+...++..    .+..+++++++| ..+++++.++++ 
T Consensus       104 Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~l-  182 (279)
T 2ihy_A          104 HSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQV-  182 (279)
T ss_dssp             HHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSE-
T ss_pred             cCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCE-
Confidence            221          01110                0012233444555532    234567777777 699999999999 


Q ss_pred             EEEEeCChhHHHhcChhhHHHHHh
Q 024315          203 EVFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       203 ~i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                       +++|||+..++....+.+.+.++
T Consensus       183 -LlLDEPts~LD~~~~~~l~~~l~  205 (279)
T 2ihy_A          183 -LILDEPAAGLDFIARESLLSILD  205 (279)
T ss_dssp             -EEEESTTTTCCHHHHHHHHHHHH
T ss_pred             -EEEeCCccccCHHHHHHHHHHHH
Confidence             99999999999998888665543

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.61  E-value=1.1e-15  Score=140.72  Aligned_cols=143  Identities=16%  Similarity=0.220  Sum_probs=101.5

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--ccccCCCCChhh--
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--GLNRDLSFKAED--  155 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--~l~~~~g~~~~~--  155 (269)
                      .++++.+... ..++++|.+++|++++|+||||||||||+++|+|++ .+.+|.|.++|.++..  ..++.++|..|+  
T Consensus         5 ~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~   82 (348)
T 3d31_A            5 ESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFH-VPDSGRILLDGKDVTDLSPEKHDIAFVYQNYS   82 (348)
T ss_dssp             EEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSS-CCSEEEEEETTEECTTSCHHHHTCEEECTTCC
T ss_pred             EEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCC-CCCCcEEEECCEECCCCchhhCcEEEEecCcc
Confidence            4566666655 788899999999999999999999999999999988 5679999999988742  111223332221  


Q ss_pred             ------HHHHHHH---H------HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHh
Q 024315          156 ------RVENIRR---I------GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEA  215 (269)
Q Consensus       156 ------~~~~~~~---l------~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~  215 (269)
                            -.+++..   .      ..+...+...++..    .+..+|+++++| ..+++++.++++  +++|||+..++.
T Consensus        83 l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~l--LLLDEP~s~LD~  160 (348)
T 3d31_A           83 LFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKI--LLLDEPLSALDP  160 (348)
T ss_dssp             CCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSE--EEEESSSTTSCH
T ss_pred             cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEECccccCCH
Confidence                  1122111   0      12333444445432    244567888888 699999999999  999999999999


Q ss_pred             cChhhHHHHHh
Q 024315          216 RDPKGLYKLAR  226 (269)
Q Consensus       216 R~~k~l~~~~r  226 (269)
                      ..++.+...++
T Consensus       161 ~~~~~l~~~l~  171 (348)
T 3d31_A          161 RTQENAREMLS  171 (348)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            98887665443

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.61  E-value=1.1e-15  Score=134.87  Aligned_cols=144  Identities=17%  Similarity=0.178  Sum_probs=101.7

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-----cccCCCCChh
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAE  154 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-----l~~~~g~~~~  154 (269)
                      .++++.+......+++++.+++|++++|+||||||||||+++|++.+ .+.+|.|.++|.++...     .+..++|.+|
T Consensus        11 ~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q   89 (257)
T 1g6h_A           11 ENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFL-KADEGRVYFENKDITNKEPAELYHYGIVRTFQ   89 (257)
T ss_dssp             EEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSS-CCSEEEEEETTEECTTCCHHHHHHHTEEECCC
T ss_pred             eeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEECCCCCHHHHHhCCEEEEcc
Confidence            46777776677788999999999999999999999999999999988 46789999999876421     1112222222


Q ss_pred             hH--------HHHHH-------------------------HHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhC
Q 024315          155 DR--------VENIR-------------------------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSML  196 (269)
Q Consensus       155 ~~--------~~~~~-------------------------~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll  196 (269)
                      +.        .+++.                         ....+...+...++..    .+...++++++| ..+++++
T Consensus        90 ~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~  169 (257)
T 1g6h_A           90 TPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALM  169 (257)
T ss_dssp             CCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHH
T ss_pred             CCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHH
Confidence            10        01100                         0012223444455532    234567777777 6999999


Q ss_pred             CCCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315          197 PEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       197 ~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      .++++  +++|||+..++....+.+.+.++
T Consensus       170 ~~p~l--llLDEPts~LD~~~~~~l~~~l~  197 (257)
T 1g6h_A          170 TNPKM--IVMDEPIAGVAPGLAHDIFNHVL  197 (257)
T ss_dssp             TCCSE--EEEESTTTTCCHHHHHHHHHHHH
T ss_pred             cCCCE--EEEeCCccCCCHHHHHHHHHHHH
Confidence            99999  99999999999998888765544

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.61  E-value=1.6e-15  Score=134.77  Aligned_cols=144  Identities=20%  Similarity=0.263  Sum_probs=100.4

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc----ccc--------
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNR--------  147 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~----l~~--------  147 (269)
                      .++++.+......+++++++.+|++++|+||||||||||+++|++++ .+.+|.|.++|.++...    +++        
T Consensus        15 ~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~-~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~   93 (266)
T 4g1u_C           15 SHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYL-SPSHGECHLLGQNLNSWQPKALARTRAVMRQY   93 (266)
T ss_dssp             EEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSS-CCSSCEEEETTEETTTSCHHHHHHHEEEECSC
T ss_pred             EeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCCcEEEECCEECCcCCHHHHhheEEEEecC
Confidence            56777777788889999999999999999999999999999999988 46789999999987521    110        


Q ss_pred             -CC--CCChhhHHHHH-------HHHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCC------CCCccEEEE
Q 024315          148 -DL--SFKAEDRVENI-------RRIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLP------EGDFIEVFM  206 (269)
Q Consensus       148 -~~--g~~~~~~~~~~-------~~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~------~~~~~~i~l  206 (269)
                       .+  .++..+.....       .....+...+...++..    .+..+|+++++| .++++++.      ++++  +++
T Consensus        94 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~l--Lll  171 (266)
T 4g1u_C           94 SELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRW--LFL  171 (266)
T ss_dssp             CCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEE--EEE
T ss_pred             CccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCE--EEE
Confidence             01  11111111000       00012223344444422    244567777777 68999998      8888  999


Q ss_pred             eCChhHHHhcChhhHHHHHh
Q 024315          207 DVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       207 d~p~~~l~~R~~k~l~~~~r  226 (269)
                      |||+..++....+.+.+.++
T Consensus       172 DEPts~LD~~~~~~i~~~l~  191 (266)
T 4g1u_C          172 DEPTSALDLYHQQHTLRLLR  191 (266)
T ss_dssp             CCCCSSCCHHHHHHHHHHHH
T ss_pred             eCccccCCHHHHHHHHHHHH
Confidence            99999999988877665543

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.60  E-value=5.2e-16  Score=140.51  Aligned_cols=144  Identities=17%  Similarity=0.215  Sum_probs=96.1

Q ss_pred             cceEEeeC-ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChh
Q 024315           80 TNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAE  154 (269)
Q Consensus        80 ~~~~~~~~-~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~  154 (269)
                      .++++.+. .....++++|.+++|++++|+||||||||||+++|++++ .+.+|.|.++|.++..    .++..++|.+|
T Consensus        57 ~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~-~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q  135 (306)
T 3nh6_A           57 ENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFY-DISSGCIRIDGQDISQVTQASLRSHIGVVPQ  135 (306)
T ss_dssp             EEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSS-CCSEEEEEETTEETTSBCHHHHHHTEEEECS
T ss_pred             EEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCC-CCCCcEEEECCEEcccCCHHHHhcceEEEec
Confidence            34555552 334567789999999999999999999999999999988 5679999999998753    12222333222


Q ss_pred             h-------HHHHH------------HHHHHHH---HHHHh--CCccee----eccCChHHHHH-HHHHHhCCCCCccEEE
Q 024315          155 D-------RVENI------------RRIGEVA---KLFAD--AGVICI----ACLISPYRKDR-DACRSMLPEGDFIEVF  205 (269)
Q Consensus       155 ~-------~~~~~------------~~l~~~a---~~~~~--~g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~i~  205 (269)
                      +       ..+++            ....+.+   .....  .|+...    ...+++++++| .++|+++.++++  ++
T Consensus       136 ~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~i--Ll  213 (306)
T 3nh6_A          136 DTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGI--IL  213 (306)
T ss_dssp             SCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE--EE
T ss_pred             CCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCE--EE
Confidence            1       11111            1111111   11111  122221    23457777777 699999999999  89


Q ss_pred             EeCChhHHHhcChhhHHHHHh
Q 024315          206 MDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       206 ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      +|||+..++....+.+.+.++
T Consensus       214 LDEPts~LD~~~~~~i~~~l~  234 (306)
T 3nh6_A          214 LDEATSALDTSNERAIQASLA  234 (306)
T ss_dssp             EECCSSCCCHHHHHHHHHHHH
T ss_pred             EECCcccCCHHHHHHHHHHHH
Confidence            999999999988877665544

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.59  E-value=5.7e-15  Score=129.23  Aligned_cols=141  Identities=17%  Similarity=0.208  Sum_probs=98.9

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--ccccCCCCChhhH-
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--GLNRDLSFKAEDR-  156 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--~l~~~~g~~~~~~-  156 (269)
                      .++++.+..+  .+++++.+++ ++++|+||||||||||+++|+|.+ .+.+|.|.++|.++..  ..++.++|.+|+. 
T Consensus         5 ~~l~~~y~~~--l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~   80 (240)
T 2onk_A            5 VRAEKRLGNF--RLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIV-KPDRGEVRLNGADITPLPPERRGIGFVPQDYA   80 (240)
T ss_dssp             EEEEEEETTE--EEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSS-CCSEEEEEETTEECTTSCTTTSCCBCCCSSCC
T ss_pred             EEEEEEeCCE--EeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEECCcCchhhCcEEEEcCCCc
Confidence            3555665543  7888999999 999999999999999999999988 4678999999987642  1222334333311 


Q ss_pred             -------HHHHH----------HHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHH
Q 024315          157 -------VENIR----------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCE  214 (269)
Q Consensus       157 -------~~~~~----------~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~  214 (269)
                             .+++.          ....+...+...++..    .+...|+++++| ..+++++.++++  +++|||+..++
T Consensus        81 l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~l--llLDEPts~LD  158 (240)
T 2onk_A           81 LFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRL--LLLDEPLSAVD  158 (240)
T ss_dssp             CCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSS--BEEESTTSSCC
T ss_pred             cCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEeCCcccCC
Confidence                   11110          0112334455555532    244567777777 699999999999  89999999999


Q ss_pred             hcChhhHHHHHh
Q 024315          215 ARDPKGLYKLAR  226 (269)
Q Consensus       215 ~R~~k~l~~~~r  226 (269)
                      ...++.+.+.++
T Consensus       159 ~~~~~~~~~~l~  170 (240)
T 2onk_A          159 LKTKGVLMEELR  170 (240)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            988887665543

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.59  E-value=9.6e-16  Score=134.20  Aligned_cols=143  Identities=17%  Similarity=0.182  Sum_probs=96.5

Q ss_pred             ceEEee-CceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhh
Q 024315           81 NILWHK-NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAED  155 (269)
Q Consensus        81 ~~~~~~-~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~  155 (269)
                      ++++.+ ......+++++.+++|++++|+||||||||||+++|++.+ .+.+|.|.++|.++..    .++..++|.+|+
T Consensus         6 ~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~   84 (243)
T 1mv5_A            6 HVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFY-QPTAGEITIDGQPIDNISLENWRSQIGFVSQD   84 (243)
T ss_dssp             EEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSS-CCSBSCEEETTEESTTTSCSCCTTTCCEECCS
T ss_pred             EEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEEhhhCCHHHHHhhEEEEcCC
Confidence            455555 3344567889999999999999999999999999999988 4668999999987642    223333333221


Q ss_pred             H-------HHHHHH-------HHHHHHHHHhCCcce---------------eeccCChHHHHH-HHHHHhCCCCCccEEE
Q 024315          156 R-------VENIRR-------IGEVAKLFADAGVIC---------------IACLISPYRKDR-DACRSMLPEGDFIEVF  205 (269)
Q Consensus       156 ~-------~~~~~~-------l~~~a~~~~~~g~~~---------------iv~~~~~~~~~r-~~ar~ll~~~~~~~i~  205 (269)
                      .       .+++..       -.++...+...++..               .....++++++| ..+++++.++++  ++
T Consensus        85 ~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~l--ll  162 (243)
T 1mv5_A           85 SAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI--LM  162 (243)
T ss_dssp             SCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE--EE
T ss_pred             CccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCE--EE
Confidence            1       111100       001111122222211               123457777777 699999999999  99


Q ss_pred             EeCChhHHHhcChhhHHHHHh
Q 024315          206 MDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       206 ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      +|||+..++....+.+.+.++
T Consensus       163 LDEPts~LD~~~~~~i~~~l~  183 (243)
T 1mv5_A          163 LDEATASLDSESESMVQKALD  183 (243)
T ss_dssp             EECCSCSSCSSSCCHHHHHHH
T ss_pred             EECCcccCCHHHHHHHHHHHH
Confidence            999999999999888776554

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.59  E-value=4.5e-15  Score=131.67  Aligned_cols=144  Identities=18%  Similarity=0.263  Sum_probs=99.1

Q ss_pred             cceEEeeC--c---eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-ccccCCCCCh
Q 024315           80 TNILWHKN--S---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-GLNRDLSFKA  153 (269)
Q Consensus        80 ~~~~~~~~--~---v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-~l~~~~g~~~  153 (269)
                      .++++.+.  .   ....+++++.+++|++++|+|+||||||||+++|+|++ .+.+|.|.++|.++.. .++..++|.+
T Consensus         6 ~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~-~p~~G~I~~~g~~~~~~~~~~~i~~v~   84 (266)
T 2yz2_A            6 VNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLI-EPTSGDVLYDGERKKGYEIRRNIGIAF   84 (266)
T ss_dssp             EEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS-CCSEEEEEETTEECCHHHHGGGEEEEC
T ss_pred             EEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCCcEEEECCEECchHHhhhhEEEEe
Confidence            35556554  3   45678899999999999999999999999999999988 4678999999987531 1111122222


Q ss_pred             hh---------HHHHHHH-----------HHHHHHHHHhCCcc--e----eeccCChHHHHH-HHHHHhCCCCCccEEEE
Q 024315          154 ED---------RVENIRR-----------IGEVAKLFADAGVI--C----IACLISPYRKDR-DACRSMLPEGDFIEVFM  206 (269)
Q Consensus       154 ~~---------~~~~~~~-----------l~~~a~~~~~~g~~--~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~l  206 (269)
                      |+         -.+++..           ...+...+...++.  .    .+...++++++| ..+++++.++++  +++
T Consensus        85 q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~l--llL  162 (266)
T 2yz2_A           85 QYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDI--LIL  162 (266)
T ss_dssp             SSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSE--EEE
T ss_pred             ccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCE--EEE
Confidence            21         0111110           01123344445554  2    234567777777 699999999999  999


Q ss_pred             eCChhHHHhcChhhHHHHHh
Q 024315          207 DVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       207 d~p~~~l~~R~~k~l~~~~r  226 (269)
                      |||+..++....+.+.+.++
T Consensus       163 DEPts~LD~~~~~~l~~~l~  182 (266)
T 2yz2_A          163 DEPLVGLDREGKTDLLRIVE  182 (266)
T ss_dssp             ESTTTTCCHHHHHHHHHHHH
T ss_pred             cCccccCCHHHHHHHHHHHH
Confidence            99999999998888765543

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.58  E-value=2e-15  Score=134.37  Aligned_cols=145  Identities=18%  Similarity=0.199  Sum_probs=97.2

Q ss_pred             cceEEeeCc---eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCC
Q 024315           80 TNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFK  152 (269)
Q Consensus        80 ~~~~~~~~~---v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~  152 (269)
                      .++.+.+..   ....++++|.+++|++++|+||||||||||+++|++++ .+.+|.|.++|.++..    .++..++|.
T Consensus        20 ~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~p~~G~I~~~g~~i~~~~~~~~~~~i~~v   98 (271)
T 2ixe_A           20 QDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLY-QPTGGKVLLDGEPLVQYDHHYLHTQVAAV   98 (271)
T ss_dssp             EEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS-CCSEEEEEETTEEGGGBCHHHHHHHEEEE
T ss_pred             EEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCCEEEECCEEcccCCHHHHhccEEEE
Confidence            455555543   45567789999999999999999999999999999988 4678999999987642    011111111


Q ss_pred             hhh-------HHHHHH--------------HH--HHHHHHHHhC--Ccce----eeccCChHHHHH-HHHHHhCCCCCcc
Q 024315          153 AED-------RVENIR--------------RI--GEVAKLFADA--GVIC----IACLISPYRKDR-DACRSMLPEGDFI  202 (269)
Q Consensus       153 ~~~-------~~~~~~--------------~l--~~~a~~~~~~--g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~  202 (269)
                      +|+       ..+++.              ..  ..+...+...  ++..    .+..+++++++| ..+++++.++++ 
T Consensus        99 ~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~l-  177 (271)
T 2ixe_A           99 GQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRL-  177 (271)
T ss_dssp             CSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSE-
T ss_pred             ecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCE-
Confidence            110       111110              00  0011122222  2221    234567777777 699999999999 


Q ss_pred             EEEEeCChhHHHhcChhhHHHHHhc
Q 024315          203 EVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       203 ~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                       +++|||+..++....+.+.+.+++
T Consensus       178 -llLDEPts~LD~~~~~~i~~~l~~  201 (271)
T 2ixe_A          178 -LILDNATSALDAGNQLRVQRLLYE  201 (271)
T ss_dssp             -EEEESTTTTCCHHHHHHHHHHHHH
T ss_pred             -EEEECCccCCCHHHHHHHHHHHHH
Confidence             999999999999998888776654

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=99.58  E-value=1.6e-14  Score=121.99  Aligned_cols=157  Identities=23%  Similarity=0.269  Sum_probs=96.2

Q ss_pred             eecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-----cccCCCCChhhHHHHHHHHHHHHHHHH
Q 024315           97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAEDRVENIRRIGEVAKLFA  171 (269)
Q Consensus        97 l~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-----l~~~~g~~~~~~~~~~~~l~~~a~~~~  171 (269)
                      +..++|++++|+|+|||||||+++.|++.+     |.++++++++...     ......+........+..+........
T Consensus        24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   98 (200)
T 4eun_A           24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET-----GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMDARA   98 (200)
T ss_dssp             ----CCCEEEEECCTTSCHHHHHHHHHHHH-----CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             hcCCCCcEEEEECCCCCCHHHHHHHHHHhh-----CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHHHHH
Confidence            445789999999999999999999999987     4678999887531     111222333333333344434443333


Q ss_pred             hCCcceeeccCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCcccc---ccccccccCCCCC--C
Q 024315          172 DAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKG---FTGIDDPYEPPLN--C  246 (269)
Q Consensus       172 ~~g~~~iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~---~~~i~~~~e~p~~--~  246 (269)
                      ..+...+++.....+..++.++++..  ++..|++++|.+.+.+|..++      .++...   +..+.+.++++..  +
T Consensus        99 ~~g~~viid~~~~~~~~~~~l~~~~~--~~~vv~l~~~~e~l~~Rl~~R------~~~~~~~~~l~~~~~~~~~~~~~~~  170 (200)
T 4eun_A           99 DAGVSTIITCSALKRTYRDVLREGPP--SVDFLHLDGPAEVIKGRMSKR------EGHFMPASLLQSQLATLEALEPDES  170 (200)
T ss_dssp             HTTCCEEEEECCCCHHHHHHHTTSSS--CCEEEEEECCHHHHHHHHTTC------SCCSSCGGGHHHHHHHCCCCCTTSC
T ss_pred             hcCCCEEEEchhhhHHHHHHHHHhCC--ceEEEEEeCCHHHHHHHHHhc------ccCCCCHHHHHHHHHHhCCCCCCCC
Confidence            44555555554444556666665543  345589999999999887432      222222   2222344455443  6


Q ss_pred             CeEEEcCCCcCHHHHHH-HHhhc
Q 024315          247 EVGVHVWYRFELAETWR-ITKWL  268 (269)
Q Consensus       247 e~~id~~~~~~~~~~~~-i~~~~  268 (269)
                      +++||++ . +++++.. |.++|
T Consensus       171 ~~~Id~~-~-~~~e~~~~I~~~l  191 (200)
T 4eun_A          171 GIVLDLR-Q-PPEQLIERALTWL  191 (200)
T ss_dssp             EEEEETT-S-CHHHHHHHHHHHH
T ss_pred             eEEEECC-C-CHHHHHHHHHHHH
Confidence            8999995 3 7888877 77775

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.56  E-value=7.6e-15  Score=128.92  Aligned_cols=143  Identities=22%  Similarity=0.242  Sum_probs=93.8

Q ss_pred             ceEEee--CceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChh
Q 024315           81 NILWHK--NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAE  154 (269)
Q Consensus        81 ~~~~~~--~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~  154 (269)
                      ++++.+  ......+.+++.+++|++++|+||||||||||+++|++++ .+.+|.|.++|.++..    .++..++|.+|
T Consensus        12 ~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q   90 (247)
T 2ff7_A           12 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFY-IPENGQVLIDGHDLALADPNWLRRQVGVVLQ   90 (247)
T ss_dssp             EEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS-CCSEEEEEETTEETTTSCHHHHHHHEEEECS
T ss_pred             EEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEEhhhCCHHHHHhcEEEEeC
Confidence            445555  2344567789999999999999999999999999999988 4678999999987642    11111111111


Q ss_pred             h-------HHHHHHH------HHHHHHHHHhCCcc-----------e----eeccCChHHHHH-HHHHHhCCCCCccEEE
Q 024315          155 D-------RVENIRR------IGEVAKLFADAGVI-----------C----IACLISPYRKDR-DACRSMLPEGDFIEVF  205 (269)
Q Consensus       155 ~-------~~~~~~~------l~~~a~~~~~~g~~-----------~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~  205 (269)
                      +       ..+++..      ...+...+...++.           .    ....+++++++| ..+++++.++++  ++
T Consensus        91 ~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~l--ll  168 (247)
T 2ff7_A           91 DNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKI--LI  168 (247)
T ss_dssp             SCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSE--EE
T ss_pred             CCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCE--EE
Confidence            0       1111100      00011111111211           1    123467777777 699999999999  99


Q ss_pred             EeCChhHHHhcChhhHHHHHh
Q 024315          206 MDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       206 ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      +|||+..++....+.+.+.++
T Consensus       169 LDEPts~LD~~~~~~i~~~l~  189 (247)
T 2ff7_A          169 FDEATSALDYESEHVIMRNMH  189 (247)
T ss_dssp             ECCCCSCCCHHHHHHHHHHHH
T ss_pred             EeCCcccCCHHHHHHHHHHHH
Confidence            999999999998888766554

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.56  E-value=8.5e-15  Score=128.73  Aligned_cols=146  Identities=18%  Similarity=0.097  Sum_probs=97.7

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhh-ccCCccEEEECCeecCcc----c-ccCCCCCh
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHG----L-NRDLSFKA  153 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l-~~~~~g~i~l~g~~~~~~----l-~~~~g~~~  153 (269)
                      .++++.+......+++++.+++|++++|+||||||||||+++|++.+ ..+.+|.|.++|.++...    . +..++|.+
T Consensus         7 ~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~   86 (250)
T 2d2e_A            7 RDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAF   86 (250)
T ss_dssp             EEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCC
T ss_pred             EeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEec
Confidence            46677776666788899999999999999999999999999999972 245689999999886421    1 11233332


Q ss_pred             hhH--------HHHHHH---------------HHHHHHHHHhCCc-ce----eecc-CChHHHHH-HHHHHhCCCCCccE
Q 024315          154 EDR--------VENIRR---------------IGEVAKLFADAGV-IC----IACL-ISPYRKDR-DACRSMLPEGDFIE  203 (269)
Q Consensus       154 ~~~--------~~~~~~---------------l~~~a~~~~~~g~-~~----iv~~-~~~~~~~r-~~ar~ll~~~~~~~  203 (269)
                      |+.        .+++..               ...+...+...++ ..    .+.. .++++++| ..+++++.++++  
T Consensus        87 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~l--  164 (250)
T 2d2e_A           87 QYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTY--  164 (250)
T ss_dssp             CCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSE--
T ss_pred             cCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCE--
Confidence            210        111100               0112233444444 12    2233 66677777 699999999999  


Q ss_pred             EEEeCChhHHHhcChhhHHHHHhc
Q 024315          204 VFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       204 i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      +++|||+..++....+.+.+.+++
T Consensus       165 llLDEPts~LD~~~~~~l~~~l~~  188 (250)
T 2d2e_A          165 AVLDETDSGLDIDALKVVARGVNA  188 (250)
T ss_dssp             EEEECGGGTTCHHHHHHHHHHHHH
T ss_pred             EEEeCCCcCCCHHHHHHHHHHHHH
Confidence            999999999999988887766543

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.56  E-value=1.8e-14  Score=127.72  Aligned_cols=142  Identities=17%  Similarity=0.095  Sum_probs=101.3

Q ss_pred             ceEEeeCc----eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-cccCCC-CChh
Q 024315           81 NILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-LNRDLS-FKAE  154 (269)
Q Consensus        81 ~~~~~~~~----v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-l~~~~g-~~~~  154 (269)
                      ++++.+..    ....+.+++.++ |++++|+||||||||||+++|++.+  +.+|.|.++|.++... .++.++ |.+|
T Consensus         6 ~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~--p~~G~I~~~g~~~~~~~~~~~i~~~v~Q   82 (263)
T 2pjz_A            6 NVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL--PYSGNIFINGMEVRKIRNYIRYSTNLPE   82 (263)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS--CCEEEEEETTEEGGGCSCCTTEEECCGG
T ss_pred             EEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC--CCCcEEEECCEECcchHHhhheEEEeCC
Confidence            45555544    556788899999 9999999999999999999999987  5689999999876421 123345 5554


Q ss_pred             hH------HHHHHHH--------HHHHHHHHhCCcc-e----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHH
Q 024315          155 DR------VENIRRI--------GEVAKLFADAGVI-C----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCE  214 (269)
Q Consensus       155 ~~------~~~~~~l--------~~~a~~~~~~g~~-~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~  214 (269)
                      +.      .+++...        ..+...+...++. .    .+..+++++++| ..+++++.++++  +++|||+..++
T Consensus        83 ~~~l~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~l--llLDEPts~LD  160 (263)
T 2pjz_A           83 AYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEI--VGLDEPFENVD  160 (263)
T ss_dssp             GSCTTSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSE--EEEECTTTTCC
T ss_pred             CCccCCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCE--EEEECCccccC
Confidence            31      1222111        1223344455554 2    234567777777 699999999999  99999999999


Q ss_pred             hcChhhHHHHHhc
Q 024315          215 ARDPKGLYKLARE  227 (269)
Q Consensus       215 ~R~~k~l~~~~r~  227 (269)
                      ...++.+.+.+++
T Consensus       161 ~~~~~~l~~~L~~  173 (263)
T 2pjz_A          161 AARRHVISRYIKE  173 (263)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9998888777664

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.54  E-value=3.3e-15  Score=139.46  Aligned_cols=144  Identities=17%  Similarity=0.192  Sum_probs=98.8

Q ss_pred             cceEEee--CceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCCh
Q 024315           80 TNILWHK--NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKA  153 (269)
Q Consensus        80 ~~~~~~~--~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~  153 (269)
                      .++++.+  ......++++|.+++|++++|+||||||||||+++|++++.  .+|.|.++|.++..    .+++.++|..
T Consensus        23 ~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--~~G~I~i~G~~i~~~~~~~~rr~ig~v~  100 (390)
T 3gd7_A           23 KDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN--TEGEIQIDGVSWDSITLEQWRKAFGVIP  100 (390)
T ss_dssp             EEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE--EEEEEEESSCBTTSSCHHHHHHTEEEES
T ss_pred             EEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC--CCeEEEECCEECCcCChHHHhCCEEEEc
Confidence            4566665  44566788899999999999999999999999999999885  57999999988752    1122233222


Q ss_pred             hh-------HHHHHHH-----HHHHHHHHHhCCccee----ec-----------cCChHHHHH-HHHHHhCCCCCccEEE
Q 024315          154 ED-------RVENIRR-----IGEVAKLFADAGVICI----AC-----------LISPYRKDR-DACRSMLPEGDFIEVF  205 (269)
Q Consensus       154 ~~-------~~~~~~~-----l~~~a~~~~~~g~~~i----v~-----------~~~~~~~~r-~~ar~ll~~~~~~~i~  205 (269)
                      |+       ..+++..     -.++...+...++...    ..           .+|++++|| .++|+++.++++  ++
T Consensus       101 Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~l--LL  178 (390)
T 3gd7_A          101 QKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI--LL  178 (390)
T ss_dssp             CCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCE--EE
T ss_pred             CCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCE--EE
Confidence            21       1111110     0111122222333211    11           167788887 699999999999  89


Q ss_pred             EeCChhHHHhcChhhHHHHHhc
Q 024315          206 MDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       206 ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      +|||+..++...++.+.+.+++
T Consensus       179 LDEPts~LD~~~~~~l~~~l~~  200 (390)
T 3gd7_A          179 LDEPSAHLDPVTYQIIRRTLKQ  200 (390)
T ss_dssp             EESHHHHSCHHHHHHHHHHHHT
T ss_pred             EeCCccCCCHHHHHHHHHHHHH
Confidence            9999999999988888777664

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.54  E-value=9.4e-15  Score=129.73  Aligned_cols=146  Identities=16%  Similarity=0.023  Sum_probs=100.9

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhh-ccCCccEEEECCeecCcc----c-ccCCCCCh
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHG----L-NRDLSFKA  153 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l-~~~~~g~i~l~g~~~~~~----l-~~~~g~~~  153 (269)
                      .++++.+......+++++.+++|++++|+||||||||||+++|++++ ..+.+|.|.++|.++...    . +..++|.+
T Consensus        24 ~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~  103 (267)
T 2zu0_C           24 KDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAF  103 (267)
T ss_dssp             EEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEEC
T ss_pred             EeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEc
Confidence            46666666666788899999999999999999999999999999985 245689999999876420    0 11122211


Q ss_pred             h-----------hHHHH----HH-----------H-HHHHHHHHHhCCcc-e----eec-cCChHHHHH-HHHHHhCCCC
Q 024315          154 E-----------DRVEN----IR-----------R-IGEVAKLFADAGVI-C----IAC-LISPYRKDR-DACRSMLPEG  199 (269)
Q Consensus       154 ~-----------~~~~~----~~-----------~-l~~~a~~~~~~g~~-~----iv~-~~~~~~~~r-~~ar~ll~~~  199 (269)
                      |           +....    ..           . ...+...+...++. .    .+. .+++++++| ..+++++.++
T Consensus       104 Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p  183 (267)
T 2zu0_C          104 QYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEP  183 (267)
T ss_dssp             SSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCC
T ss_pred             cCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCC
Confidence            1           11100    00           0 01122344445542 1    222 367777777 6999999999


Q ss_pred             CccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          200 DFIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       200 ~~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      ++  +++|||+..++....+.+.+.+++
T Consensus       184 ~l--LlLDEPts~LD~~~~~~l~~~l~~  209 (267)
T 2zu0_C          184 EL--CILDESDSGLDIDALKVVADGVNS  209 (267)
T ss_dssp             SE--EEEESTTTTCCHHHHHHHHHHHHT
T ss_pred             CE--EEEeCCCCCCCHHHHHHHHHHHHH
Confidence            99  999999999999998888877664

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.53  E-value=8.3e-15  Score=129.61  Aligned_cols=143  Identities=18%  Similarity=0.183  Sum_probs=94.7

Q ss_pred             cceEEeeCc---eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCC
Q 024315           80 TNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFK  152 (269)
Q Consensus        80 ~~~~~~~~~---v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~  152 (269)
                      .++.+.+..   ....+++++.+++|++++|+||||||||||+++|++++. + +|.|.++|.++..    .++..++|.
T Consensus        21 ~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~-~G~I~i~g~~i~~~~~~~~~~~i~~v   98 (260)
T 2ghi_A           21 SDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD-A-EGDIKIGGKNVNKYNRNSIRSIIGIV   98 (260)
T ss_dssp             EEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-C-EEEEEETTEEGGGBCHHHHHTTEEEE
T ss_pred             EEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC-C-CeEEEECCEEhhhcCHHHHhccEEEE
Confidence            355555543   235677899999999999999999999999999999885 5 7999999987642    112222222


Q ss_pred             hhh-------HHHHHHH------HHHHHHHHHhCCcc---------------eeeccCChHHHHH-HHHHHhCCCCCccE
Q 024315          153 AED-------RVENIRR------IGEVAKLFADAGVI---------------CIACLISPYRKDR-DACRSMLPEGDFIE  203 (269)
Q Consensus       153 ~~~-------~~~~~~~------l~~~a~~~~~~g~~---------------~iv~~~~~~~~~r-~~ar~ll~~~~~~~  203 (269)
                      +|+       ..+++..      ..++...+...++.               ......++++++| ..+++++.++++  
T Consensus        99 ~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~l--  176 (260)
T 2ghi_A           99 PQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKI--  176 (260)
T ss_dssp             CSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSE--
T ss_pred             cCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCE--
Confidence            221       1111110      00111111112211               1123567777777 699999999999  


Q ss_pred             EEEeCChhHHHhcChhhHHHHHh
Q 024315          204 VFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       204 i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      +++|||+..++....+.+.+.++
T Consensus       177 llLDEPts~LD~~~~~~i~~~l~  199 (260)
T 2ghi_A          177 VIFDEATSSLDSKTEYLFQKAVE  199 (260)
T ss_dssp             EEEECCCCTTCHHHHHHHHHHHH
T ss_pred             EEEECccccCCHHHHHHHHHHHH
Confidence            99999999999998887765554

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.51  E-value=2.1e-14  Score=140.36  Aligned_cols=145  Identities=17%  Similarity=0.251  Sum_probs=98.6

Q ss_pred             cceEEeeCc--eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCCh
Q 024315           80 TNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKA  153 (269)
Q Consensus        80 ~~~~~~~~~--v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~  153 (269)
                      .++++.+..  ....++.++++++|++++|+||||||||||++.|+|.+ +|.+|.|.++|.++..    .+++.+++.+
T Consensus       345 ~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~-~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~  423 (582)
T 3b5x_A          345 KDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFY-DVDSGSICLDGHDVRDYKLTNLRRHFALVS  423 (582)
T ss_pred             EEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCCEEEECCEEhhhCCHHHHhcCeEEEc
Confidence            355555532  34567789999999999999999999999999999988 5678999999988742    2333344443


Q ss_pred             hhH-------HHHHHH-------HHHHHHHHHhCCcce---------------eeccCChHHHHH-HHHHHhCCCCCccE
Q 024315          154 EDR-------VENIRR-------IGEVAKLFADAGVIC---------------IACLISPYRKDR-DACRSMLPEGDFIE  203 (269)
Q Consensus       154 ~~~-------~~~~~~-------l~~~a~~~~~~g~~~---------------iv~~~~~~~~~r-~~ar~ll~~~~~~~  203 (269)
                      |+.       .+++..       ..++...+...++..               -....++++++| ..+|+++.++++  
T Consensus       424 Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~i--  501 (582)
T 3b5x_A          424 QNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPV--  501 (582)
T ss_pred             CCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCE--
Confidence            321       111110       001111122222211               123457777777 699999999999  


Q ss_pred             EEEeCChhHHHhcChhhHHHHHhc
Q 024315          204 VFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       204 i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      +++|||+..+|....+.+.+..++
T Consensus       502 lllDEpts~LD~~~~~~i~~~l~~  525 (582)
T 3b5x_A          502 LILDEATSALDTESERAIQAALDE  525 (582)
T ss_pred             EEEECccccCCHHHHHHHHHHHHH
Confidence            999999999999998887766543

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.51  E-value=4.8e-15  Score=129.40  Aligned_cols=143  Identities=17%  Similarity=0.199  Sum_probs=91.5

Q ss_pred             cceEEeeC--ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec--CcccccCCCCChhh
Q 024315           80 TNILWHKN--SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC--RHGLNRDLSFKAED  155 (269)
Q Consensus        80 ~~~~~~~~--~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~--~~~l~~~~g~~~~~  155 (269)
                      .++++.+.  .....+++++++++|++++|+||||||||||+++|++.+. +.+|.|.++|.--  ..... -...+..+
T Consensus         7 ~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~I~~~g~i~~v~Q~~~-~~~~tv~e   84 (237)
T 2cbz_A            7 RNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD-KVEGHVAIKGSVAYVPQQAW-IQNDSLRE   84 (237)
T ss_dssp             EEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE-EEEEEEEECSCEEEECSSCC-CCSEEHHH
T ss_pred             EEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCEEEEEcCCCc-CCCcCHHH
Confidence            35555554  3456778899999999999999999999999999999884 5689999987310  00000 00000000


Q ss_pred             HH--------HHHHHHHHHHHHHHhCCc---------ceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcC
Q 024315          156 RV--------ENIRRIGEVAKLFADAGV---------ICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD  217 (269)
Q Consensus       156 ~~--------~~~~~l~~~a~~~~~~g~---------~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~  217 (269)
                      ..        +....+.+...+....+.         ...+...++++++| ..+++++.++++  +++|||+..++...
T Consensus        85 nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~l--llLDEPts~LD~~~  162 (237)
T 2cbz_A           85 NILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADI--YLFDDPLSAVDAHV  162 (237)
T ss_dssp             HHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSE--EEEESTTTTSCHHH
T ss_pred             HhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCE--EEEeCcccccCHHH
Confidence            00        001111111111111111         11234567777777 699999999999  99999999999998


Q ss_pred             hhhHHHHHh
Q 024315          218 PKGLYKLAR  226 (269)
Q Consensus       218 ~k~l~~~~r  226 (269)
                      .+.+.+.+.
T Consensus       163 ~~~i~~~l~  171 (237)
T 2cbz_A          163 GKHIFENVI  171 (237)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHHH
Confidence            888877663

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.50  E-value=5.2e-14  Score=122.11  Aligned_cols=139  Identities=12%  Similarity=0.148  Sum_probs=89.3

Q ss_pred             cceEEeeC--ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec--Cc--ccccCCCCCh
Q 024315           80 TNILWHKN--SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC--RH--GLNRDLSFKA  153 (269)
Q Consensus        80 ~~~~~~~~--~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~--~~--~l~~~~g~~~  153 (269)
                      .++++.+.  .....+++++.+++|++++|+||||||||||+++|++.+ .+.+|.|.++|.--  ..  .+.   ..+.
T Consensus        10 ~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~i~~v~q~~~~~---~~tv   85 (229)
T 2pze_A           10 ENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL-EPSEGKIKHSGRISFCSQFSWIM---PGTI   85 (229)
T ss_dssp             EEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEECSCEEEECSSCCCC---SBCH
T ss_pred             EEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-cCCccEEEECCEEEEEecCCccc---CCCH
Confidence            34555552  345667889999999999999999999999999999988 46789999988311  00  010   0011


Q ss_pred             hhHH--------HHHHHHHH---HHHHHHhCCc------ceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHh
Q 024315          154 EDRV--------ENIRRIGE---VAKLFADAGV------ICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEA  215 (269)
Q Consensus       154 ~~~~--------~~~~~l~~---~a~~~~~~g~------~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~  215 (269)
                      .+..        .......+   +...+.....      .......++++++| ..+++++.++++  +++|||+..++.
T Consensus        86 ~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l--llLDEPts~LD~  163 (229)
T 2pze_A           86 KENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADL--YLLDSPFGYLDV  163 (229)
T ss_dssp             HHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSE--EEEESTTTTSCH
T ss_pred             HHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCE--EEEECcccCCCH
Confidence            1110        00000000   0011111110      00123567777777 699999999999  999999999999


Q ss_pred             cChhhHHHH
Q 024315          216 RDPKGLYKL  224 (269)
Q Consensus       216 R~~k~l~~~  224 (269)
                      ...+.+.+.
T Consensus       164 ~~~~~i~~~  172 (229)
T 2pze_A          164 LTEKEIFES  172 (229)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888877664

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=99.49  E-value=1.4e-13  Score=113.17  Aligned_cols=154  Identities=17%  Similarity=0.186  Sum_probs=91.4

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc--ccc-CCCCChh--hHHHHHHHHHHHHHHHHhCC
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--LNR-DLSFKAE--DRVENIRRIGEVAKLFADAG  174 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~--l~~-~~g~~~~--~~~~~~~~l~~~a~~~~~~g  174 (269)
                      .+|++++|+|+|||||||+++.|++.+     |.++++++++...  +.. ..++..+  .....+..+..........+
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQL-----HAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTN   80 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH-----TCEEEEGGGGCCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhh-----CcEEEeCccccchHHHHHhhcCcCCCccccccHHHHHHHHHHHHHhcC
Confidence            568999999999999999999999976     3678898887532  110 1233322  22233333333333232334


Q ss_pred             cceeeccCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCcccc---ccccccccCCC---CCCCe
Q 024315          175 VICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKG---FTGIDDPYEPP---LNCEV  248 (269)
Q Consensus       175 ~~~iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~---~~~i~~~~e~p---~~~e~  248 (269)
                      ...+++.+......++.+++..  +++..|++++|.+.+.+|..++      .+....   +....+.|++|   ..+++
T Consensus        81 ~~~vi~~~~~~~~~~~~l~~~~--~~~~vv~l~~~~e~~~~R~~~R------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (175)
T 1knq_A           81 KVSLIVCSALKKHYRDLLREGN--PNLSFIYLKGDFDVIESRLKAR------KGHFFKTQMLVTQFETLQEPGADETDVL  152 (175)
T ss_dssp             SEEEEECCCCSHHHHHHHHTTC--TTEEEEEEECCHHHHHHHHHTS------TTCCCCHHHHHHHHHHCCCCCTTCTTEE
T ss_pred             CcEEEEeCchHHHHHHHHHhcC--CCEEEEEEECCHHHHHHHHHhc------cCCCCchHHHHHHHHhhhCcccCCCCeE
Confidence            4455554444455555555432  2445599999999999987433      111100   11111224443   23689


Q ss_pred             EEEcCCCcCHHHHHH-HHhhc
Q 024315          249 GVHVWYRFELAETWR-ITKWL  268 (269)
Q Consensus       249 ~id~~~~~~~~~~~~-i~~~~  268 (269)
                      +||++  .+++++.. |.++|
T Consensus       153 ~Id~~--~~~~~~~~~i~~~l  171 (175)
T 1knq_A          153 VVDID--QPLEGVVASTIEVI  171 (175)
T ss_dssp             EEECS--SCHHHHHHHHHHHH
T ss_pred             EEeCC--CCHHHHHHHHHHHH
Confidence            99985  57888877 77664

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.49  E-value=3.6e-14  Score=125.05  Aligned_cols=141  Identities=13%  Similarity=0.044  Sum_probs=92.6

Q ss_pred             cceEEeeC-ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC---c--ccccCCCCCh
Q 024315           80 TNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR---H--GLNRDLSFKA  153 (269)
Q Consensus        80 ~~~~~~~~-~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~---~--~l~~~~g~~~  153 (269)
                      .++++.+. .....+++++.+++|++++|+||||||||||+++|++.+ .+.+|.|.+... +.   .  .+..  .++.
T Consensus         8 ~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~I~~~~~-i~~v~q~~~~~~--~~tv   83 (253)
T 2nq2_C            8 ENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIH-RPIQGKIEVYQS-IGFVPQFFSSPF--AYSV   83 (253)
T ss_dssp             EEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSS-CCSEEEEEECSC-EEEECSCCCCSS--CCBH
T ss_pred             eeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEEecc-EEEEcCCCccCC--CCCH
Confidence            45666665 555678889999999999999999999999999999988 466888764211 10   0  0100  1111


Q ss_pred             hhHHHH-------------HHHHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHh
Q 024315          154 EDRVEN-------------IRRIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEA  215 (269)
Q Consensus       154 ~~~~~~-------------~~~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~  215 (269)
                      .+....             ......+...+...++..    .+...|+++++| ..+++++.++++  +++|||+..++.
T Consensus        84 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~l--llLDEPts~LD~  161 (253)
T 2nq2_C           84 LDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKL--ILLDEPTSALDL  161 (253)
T ss_dssp             HHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSE--EEESSSSTTSCH
T ss_pred             HHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEeCCcccCCH
Confidence            111000             000011223344445432    244567777777 699999999999  999999999999


Q ss_pred             cChhhHHHHHh
Q 024315          216 RDPKGLYKLAR  226 (269)
Q Consensus       216 R~~k~l~~~~r  226 (269)
                      ...+.+.+.++
T Consensus       162 ~~~~~l~~~l~  172 (253)
T 2nq2_C          162 ANQDIVLSLLI  172 (253)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            98888765544

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.48  E-value=1.2e-14  Score=127.90  Aligned_cols=133  Identities=13%  Similarity=0.122  Sum_probs=91.2

Q ss_pred             eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChh--------hHH
Q 024315           90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAE--------DRV  157 (269)
Q Consensus        90 ~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~--------~~~  157 (269)
                      ...+++++.+++|++++|+||||||||||+++|+|.+. +. |.|.++|.++..    .++..++|.+|        ...
T Consensus        14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~-p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~   91 (249)
T 2qi9_C           14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW   91 (249)
T ss_dssp             TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-CE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHH
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-CC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHH
Confidence            35677899999999999999999999999999999884 55 999999987632    01111111111        111


Q ss_pred             HHHHH-------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCC-------ccEEEEeCChhHHHhcCh
Q 024315          158 ENIRR-------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGD-------FIEVFMDVPLQVCEARDP  218 (269)
Q Consensus       158 ~~~~~-------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~-------~~~i~ld~p~~~l~~R~~  218 (269)
                      +++..       ...+...+...++..    .+...++++++| ..+++++.+++       +  +++|||+..++....
T Consensus        92 e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~l--llLDEPts~LD~~~~  169 (249)
T 2qi9_C           92 HYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQL--LLLDEPMNSLDVAQQ  169 (249)
T ss_dssp             HHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCE--EEESSTTTTCCHHHH
T ss_pred             HHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeE--EEEECCcccCCHHHH
Confidence            11110       112233444445532    244567777777 68999999988       8  999999999999988


Q ss_pred             hhHHHHHh
Q 024315          219 KGLYKLAR  226 (269)
Q Consensus       219 k~l~~~~r  226 (269)
                      +.+.+.++
T Consensus       170 ~~l~~~l~  177 (249)
T 2qi9_C          170 SALDKILS  177 (249)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88765544

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=99.48  E-value=3.9e-13  Score=110.54  Aligned_cols=158  Identities=18%  Similarity=0.104  Sum_probs=91.1

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccC-------CCCC-------hhhHHHHHHHHHHH
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD-------LSFK-------AEDRVENIRRIGEV  166 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~-------~g~~-------~~~~~~~~~~l~~~  166 (269)
                      .|.+|+|+|+|||||||+++.|+..+..   +.+.++.|.++..+...       +.+.       ....+.....+.+.
T Consensus         2 ~~~~i~l~G~~GsGKST~a~~La~~l~~---~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (178)
T 1qhx_A            2 TTRMIILNGGSSAGKSGIVRCLQSVLPE---PWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEG   78 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHSSS---CEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCC---CeEEeccchHhhhcchhhccchhhccccCCCccccchhHHHHHHHHHHH
Confidence            3578999999999999999999998742   34555565443211110       1111       11222333333333


Q ss_pred             HHHHHhCCcceeeccCCh-HHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCcccccc-ccccccCCCC
Q 024315          167 AKLFADAGVICIACLISP-YRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFT-GIDDPYEPPL  244 (269)
Q Consensus       167 a~~~~~~g~~~iv~~~~~-~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~-~i~~~~e~p~  244 (269)
                      ...+...|..++++.... ....++..++.+....+..+++++|+++|.+|..++      ..+..... ...+.++.|.
T Consensus        79 ~~~~~~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~r------~~~~~~~~~~~~~~~~~~~  152 (178)
T 1qhx_A           79 VVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETAR------GDRVAGMAAKQAYVVHEGV  152 (178)
T ss_dssp             HHHHHHTTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHHHT------SSSCTTHHHHHTTGGGTTC
T ss_pred             HHHHHhcCCeEEEEeccccChHHHHHHHHHhcCCcEEEEEEECCHHHHHHHHHhh------CCcccchhhhhchhhccCC
Confidence            444445565555555432 223344455555545566689999999999987433      22221111 0112223345


Q ss_pred             CCCeEEEcCCCcCHHHHHH-HHhhc
Q 024315          245 NCEVGVHVWYRFELAETWR-ITKWL  268 (269)
Q Consensus       245 ~~e~~id~~~~~~~~~~~~-i~~~~  268 (269)
                      .++++|||+ ..+++++.. |.++|
T Consensus       153 ~~d~~idt~-~~~~~~~~~~I~~~l  176 (178)
T 1qhx_A          153 EYDVEVDTT-HKESIECAWAIAAHV  176 (178)
T ss_dssp             CCSEEEETT-SSCHHHHHHHHHTTC
T ss_pred             CCcEEEECC-CCCHHHHHHHHHHHh
Confidence            588999995 667888887 87775

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.46  E-value=2.3e-14  Score=140.04  Aligned_cols=143  Identities=18%  Similarity=0.260  Sum_probs=95.1

Q ss_pred             ceEEeeCc--eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChh
Q 024315           81 NILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAE  154 (269)
Q Consensus        81 ~~~~~~~~--v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~  154 (269)
                      ++++.+..  ....++.++++++|++++|+||||||||||++.|.|.+ ++.+|.|.++|.++..    .+++.+++.+|
T Consensus       346 ~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~-~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q  424 (582)
T 3b60_A          346 NVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFY-DIDEGHILMDGHDLREYTLASLRNQVALVSQ  424 (582)
T ss_dssp             EEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTT-CCSEEEEEETTEETTTBCHHHHHHTEEEECS
T ss_pred             EEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc-CCCCCeEEECCEEccccCHHHHHhhCeEEcc
Confidence            44444431  33456679999999999999999999999999999988 5779999999988753    12222222222


Q ss_pred             h-------HHHHHHH-------HHHHHHHHHhCCcc-----------e----eeccCChHHHHH-HHHHHhCCCCCccEE
Q 024315          155 D-------RVENIRR-------IGEVAKLFADAGVI-----------C----IACLISPYRKDR-DACRSMLPEGDFIEV  204 (269)
Q Consensus       155 ~-------~~~~~~~-------l~~~a~~~~~~g~~-----------~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i  204 (269)
                      +       ..+++..       -.++...+...++.           .    -....++++++| ..+|+++.++++  +
T Consensus       425 ~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~i--l  502 (582)
T 3b60_A          425 NVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPI--L  502 (582)
T ss_dssp             SCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSE--E
T ss_pred             CCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCE--E
Confidence            1       1111110       00111122222221           1    123457788777 699999999999  9


Q ss_pred             EEeCChhHHHhcChhhHHHHHh
Q 024315          205 FMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       205 ~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      ++|||+..+|....+.+.+..+
T Consensus       503 llDEpts~LD~~~~~~i~~~l~  524 (582)
T 3b60_A          503 ILDEATSALDTESERAIQAALD  524 (582)
T ss_dssp             EEETTTSSCCHHHHHHHHHHHH
T ss_pred             EEECccccCCHHHHHHHHHHHH
Confidence            9999999999998887765544

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.44  E-value=3.7e-14  Score=138.46  Aligned_cols=133  Identities=22%  Similarity=0.214  Sum_probs=89.8

Q ss_pred             eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhh-------HHHH
Q 024315           91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAED-------RVEN  159 (269)
Q Consensus        91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~-------~~~~  159 (269)
                      ..++.++++++|++++|+||||||||||++.|.|.+ ++.+|.|.++|.++..    .+++.+++.+|+       ..++
T Consensus       356 ~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~-~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~en  434 (578)
T 4a82_A          356 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY-DVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKEN  434 (578)
T ss_dssp             SEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSS-CCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHH
T ss_pred             ceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCC-CCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHH
Confidence            345679999999999999999999999999999988 5679999999988753    122222322221       1111


Q ss_pred             HHH------HHHHHHHHHhC-----------Cccee----eccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcC
Q 024315          160 IRR------IGEVAKLFADA-----------GVICI----ACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD  217 (269)
Q Consensus       160 ~~~------l~~~a~~~~~~-----------g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~  217 (269)
                      +..      ..++.......           |....    ....++++++| ..+|+++.++++  +++|||+..+|...
T Consensus       435 i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~i--lllDEpts~LD~~~  512 (578)
T 4a82_A          435 ILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPI--LILDEATSALDLES  512 (578)
T ss_dssp             HGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSE--EEEESTTTTCCHHH
T ss_pred             HhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCE--EEEECccccCCHHH
Confidence            110      00111111111           22111    23457788887 699999999999  99999999999988


Q ss_pred             hhhHHHHHh
Q 024315          218 PKGLYKLAR  226 (269)
Q Consensus       218 ~k~l~~~~r  226 (269)
                      .+.+.+..+
T Consensus       513 ~~~i~~~l~  521 (578)
T 4a82_A          513 ESIIQEALD  521 (578)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777665543

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.42  E-value=7.3e-14  Score=136.68  Aligned_cols=133  Identities=17%  Similarity=0.193  Sum_probs=90.8

Q ss_pred             eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhh-------HHHH
Q 024315           91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAED-------RVEN  159 (269)
Q Consensus        91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~-------~~~~  159 (269)
                      ..++.++++++|++++|+||||||||||++.|.|.+ ++.+|.|.++|.++..    .+++.+++.+|+       .+++
T Consensus       358 ~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~-~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~en  436 (587)
T 3qf4_A          358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLI-DPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKEN  436 (587)
T ss_dssp             SEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSS-CCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHH
T ss_pred             ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-cCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHH
Confidence            346679999999999999999999999999999988 5679999999988753    122222222221       1111


Q ss_pred             H------------HHHHHHH---HHHHh--CCccee----eccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcC
Q 024315          160 I------------RRIGEVA---KLFAD--AGVICI----ACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD  217 (269)
Q Consensus       160 ~------------~~l~~~a---~~~~~--~g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~  217 (269)
                      +            ....+.+   ..+..  .|....    ....+++++|| ..+|+++.++++  +++|||+..+|...
T Consensus       437 i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~i--lllDEpts~LD~~~  514 (587)
T 3qf4_A          437 LKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKV--LILDDCTSSVDPIT  514 (587)
T ss_dssp             HTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSE--EEEESCCTTSCHHH
T ss_pred             HhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCE--EEEECCcccCCHHH
Confidence            1            1111111   11111  122222    23457788887 699999999999  89999999999988


Q ss_pred             hhhHHHHHh
Q 024315          218 PKGLYKLAR  226 (269)
Q Consensus       218 ~k~l~~~~r  226 (269)
                      .+.+.+..+
T Consensus       515 ~~~i~~~l~  523 (587)
T 3qf4_A          515 EKRILDGLK  523 (587)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888776654

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.42  E-value=8.4e-14  Score=147.33  Aligned_cols=145  Identities=16%  Similarity=0.230  Sum_probs=101.2

Q ss_pred             cceEEeeCceeec--------cCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----cccc
Q 024315           80 TNILWHKNSVDKR--------DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNR  147 (269)
Q Consensus        80 ~~~~~~~~~v~~~--------~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~  147 (269)
                      ..++++++.++|+        ++.++++++|+.++|+|+||||||||+++|.|++ ++.+|.|.+||.++++    .+++
T Consensus      1075 g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~-~p~~G~I~iDG~di~~i~~~~lR~ 1153 (1321)
T 4f4c_A         1075 GKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFY-DTLGGEIFIDGSEIKTLNPEHTRS 1153 (1321)
T ss_dssp             CCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSS-CCSSSEEEETTEETTTBCHHHHHT
T ss_pred             CeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCc-cCCCCEEEECCEEhhhCCHHHHHh
Confidence            3566666666664        3458999999999999999999999999999988 5779999999999874    3444


Q ss_pred             CCCCChhhH-------HHHH--------------HHHHHHH---HHHH--hCCcceee----ccCChHHHHH-HHHHHhC
Q 024315          148 DLSFKAEDR-------VENI--------------RRIGEVA---KLFA--DAGVICIA----CLISPYRKDR-DACRSML  196 (269)
Q Consensus       148 ~~g~~~~~~-------~~~~--------------~~l~~~a---~~~~--~~g~~~iv----~~~~~~~~~r-~~ar~ll  196 (269)
                      .+++.+|+-       ++++              ....+.+   ....  ..|+...+    ...+++++|| .++|+++
T Consensus      1154 ~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAll 1233 (1321)
T 4f4c_A         1154 QIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALV 1233 (1321)
T ss_dssp             TEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHH
T ss_pred             heEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHH
Confidence            444333321       1221              1111111   1111  12333222    3457788887 6999999


Q ss_pred             CCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          197 PEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       197 ~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      .++++  +.+|||++.+|....+.+.+.+++
T Consensus      1234 r~~~I--LiLDEaTSaLD~~tE~~Iq~~l~~ 1262 (1321)
T 4f4c_A         1234 RNPKI--LLLDEATSALDTESEKVVQEALDR 1262 (1321)
T ss_dssp             SCCSE--EEEESCCCSTTSHHHHHHHHHHTT
T ss_pred             hCCCE--EEEeCccccCCHHHHHHHHHHHHH
Confidence            99999  999999999999888777776654

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=99.41  E-value=9.6e-14  Score=133.50  Aligned_cols=167  Identities=13%  Similarity=0.102  Sum_probs=108.1

Q ss_pred             Cccccccccceeeccccccccccchhhhcccccccccccccccccccce--EEeeCceeeccCcce--ecCCCeEEEEEc
Q 024315           34 GFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNI--LWHKNSVDKRDRQQL--LQQKGCVIWITG  109 (269)
Q Consensus        34 ~~~~~~~~~~f~~idr~~~~~~~~~~~~~~~~~gagmi~~~~~~~~~~~--~~~~~~v~~~~r~sl--~~~~g~~i~l~G  109 (269)
                      +|..++.+|+|+++|+.+|...      .+.+..++|++.. +....++  .|....|....+..+  ..++|.+|||+|
T Consensus       330 ~~~y~~~~g~~i~~d~~p~~~~------~~~~iSgt~IR~~-Lr~G~~~P~~f~rpeV~~vLr~~~~~~~~~~~~I~l~G  402 (511)
T 1g8f_A          330 MVTYLPDEDRYAPIDQIDTTKT------RTLNISGTELRRR-LRVGGEIPEWFSYPEVVKILRESNPPRPKQGFSIVLGN  402 (511)
T ss_dssp             CEEEEGGGTEEEEGGGCSSSCC------CCBCCCHHHHHHH-HHHTCCCCTTTSCHHHHHHHHHHSCCGGGCCEEEEECT
T ss_pred             ceeEecccCeEEEcccCCCCcc------cccccCHHHHHHH-HhCCCCCCccccChhhHHHHHHhcccccccceEEEecc
Confidence            7888999999999999998421      1224445544331 2222333  344444554444444  467899999999


Q ss_pred             CCCChHHHHHHHHHHhhcc-C-CccEEEECCeecCcccccCCCCChhhHHHHHHHHHHHHHHHHhCCcceeeccCChHHH
Q 024315          110 LSGSGKSTLACALSQALHW-R-GKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRK  187 (269)
Q Consensus       110 ~sGsGKSTla~~L~~~l~~-~-~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~l~~~a~~~~~~g~~~iv~~~~~~~~  187 (269)
                      ++||||||++++|++.|.. . +....++|+|+ .           .+       +..++..+...|..++++..++   
T Consensus       403 lsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~-~-----------~e-------i~~va~~~~~~G~~Vv~~~~sp---  460 (511)
T 1g8f_A          403 SLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN-K-----------TE-------LLSLIQDFIGSGSGLIIPDQWE---  460 (511)
T ss_dssp             TCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT-C-----------HH-------HHTTHHHHHHTTCEEEESSCCC---
T ss_pred             cCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC-c-----------HH-------HHHHHHHHHhcCCeEEEecCCH---
Confidence            9999999999999999974 3 24566888876 1           11       2234445556677666666555   


Q ss_pred             HHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCccccccccccccCCCCCCCeEEEcCCCcCHHHHHH-HHh
Q 024315          188 DRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEVGVHVWYRFELAETWR-ITK  266 (269)
Q Consensus       188 ~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~~i~~~~e~p~~~e~~id~~~~~~~~~~~~-i~~  266 (269)
                        +..|+++....|++++                                    .|..++++|||+ ..+++++.. |.+
T Consensus       461 --~~~R~~l~~g~fv~v~------------------------------------~p~~adI~IDTs-~~s~eevV~~Il~  501 (511)
T 1g8f_A          461 --DDKDSVVGKQNVYLLD------------------------------------TSSSADIQLESA-DEPISHIVQKVVL  501 (511)
T ss_dssp             --GGGGGGSCCTTEEEEE------------------------------------SSTTCSEECSST-TCCHHHHHHHHHH
T ss_pred             --HHHHHHhcCCCEEEEe------------------------------------cCCCCcEEEECC-CCCHHHHHHHHHH
Confidence              2233444433443333                                    456678999995 678999888 877


Q ss_pred             hc
Q 024315          267 WL  268 (269)
Q Consensus       267 ~~  268 (269)
                      +|
T Consensus       502 ~L  503 (511)
T 1g8f_A          502 FL  503 (511)
T ss_dssp             HH
T ss_pred             HH
Confidence            75

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.39  E-value=8.7e-14  Score=136.42  Aligned_cols=133  Identities=17%  Similarity=0.196  Sum_probs=90.0

Q ss_pred             eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhh-------HHHH
Q 024315           91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAED-------RVEN  159 (269)
Q Consensus        91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~-------~~~~  159 (269)
                      ..++.++++++|++++|+||||||||||++.|.|.+ ++.+|.|.++|.++..    .+++.+++.+|+       ..++
T Consensus       370 ~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~-~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~en  448 (598)
T 3qf4_B          370 VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFY-DVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKEN  448 (598)
T ss_dssp             SCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSS-CCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHH
T ss_pred             cccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCc-CCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHH
Confidence            456779999999999999999999999999999988 5779999999988753    122222222221       1112


Q ss_pred             HHHH------HHHHHHHHhC-----------Cccee----eccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcC
Q 024315          160 IRRI------GEVAKLFADA-----------GVICI----ACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD  217 (269)
Q Consensus       160 ~~~l------~~~a~~~~~~-----------g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~  217 (269)
                      +..-      .++.......           |....    ....+++++|| ..+|+++.++++  +++|||+..+|...
T Consensus       449 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~i--lllDEpts~LD~~~  526 (598)
T 3qf4_B          449 LKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKI--LILDEATSNVDTKT  526 (598)
T ss_dssp             HHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSE--EEECCCCTTCCHHH
T ss_pred             HhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCE--EEEECCccCCCHHH
Confidence            1100      0011111111           11111    23457788887 699999999999  89999999999988


Q ss_pred             hhhHHHHHh
Q 024315          218 PKGLYKLAR  226 (269)
Q Consensus       218 ~k~l~~~~r  226 (269)
                      .+.+.+..+
T Consensus       527 ~~~i~~~l~  535 (598)
T 3qf4_B          527 EKSIQAAMW  535 (598)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            877665544

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.38  E-value=4.5e-13  Score=141.78  Aligned_cols=142  Identities=18%  Similarity=0.206  Sum_probs=96.4

Q ss_pred             ceEEeeCceeec--------cCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccC
Q 024315           81 NILWHKNSVDKR--------DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRD  148 (269)
Q Consensus        81 ~~~~~~~~v~~~--------~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~  148 (269)
                      +++++++.++|+        ++.++++++|++++|+|+||||||||+++|.|.+ ++.+|.|.+||.+++.    .++..
T Consensus       415 ~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~-~~~~G~I~idG~~i~~~~~~~lr~~  493 (1321)
T 4f4c_A          415 DITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYY-DVLKGKITIDGVDVRDINLEFLRKN  493 (1321)
T ss_dssp             CEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSS-CCSEEEEEETTEETTTSCHHHHHHH
T ss_pred             cEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcccc-ccccCcccCCCccchhccHHHHhhc
Confidence            466666666553        4558999999999999999999999999999988 5779999999998863    22222


Q ss_pred             CCCChhhH-------H------------HHHHHHHHHH---HHHH--hCCccee----eccCChHHHHH-HHHHHhCCCC
Q 024315          149 LSFKAEDR-------V------------ENIRRIGEVA---KLFA--DAGVICI----ACLISPYRKDR-DACRSMLPEG  199 (269)
Q Consensus       149 ~g~~~~~~-------~------------~~~~~l~~~a---~~~~--~~g~~~i----v~~~~~~~~~r-~~ar~ll~~~  199 (269)
                      ++|.+|+-       +            +.+....+.+   ....  ..|....    ...+++++++| .++|+++.++
T Consensus       494 i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~  573 (1321)
T 4f4c_A          494 VAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNP  573 (1321)
T ss_dssp             EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCC
T ss_pred             ccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCC
Confidence            23322211       1            1111111111   1111  1233222    23457888888 7999999999


Q ss_pred             CccEEEEeCChhHHHhcChhhHHHHH
Q 024315          200 DFIEVFMDVPLQVCEARDPKGLYKLA  225 (269)
Q Consensus       200 ~~~~i~ld~p~~~l~~R~~k~l~~~~  225 (269)
                      ++  +++|+|++.+|....+.+.+.+
T Consensus       574 ~I--liLDE~tSaLD~~te~~i~~~l  597 (1321)
T 4f4c_A          574 KI--LLLDEATSALDAESEGIVQQAL  597 (1321)
T ss_dssp             SE--EEEESTTTTSCTTTHHHHHHHH
T ss_pred             CE--EEEecccccCCHHHHHHHHHHH
Confidence            99  8999999999998766555443

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=99.36  E-value=4.8e-12  Score=106.51  Aligned_cols=151  Identities=25%  Similarity=0.271  Sum_probs=92.7

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-----cccCCCCChhhHHHHHHHHHHHHHHHHhCC
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAEDRVENIRRIGEVAKLFADAG  174 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-----l~~~~g~~~~~~~~~~~~l~~~a~~~~~~g  174 (269)
                      +.+.+|+|+|++||||||+++.|++.+.     ..++++|.+...     ......+........++.+..   .+ ..+
T Consensus        16 ~~~~~I~l~G~~GsGKSTla~~L~~~lg-----~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~---~~-~~~   86 (202)
T 3t61_A           16 RFPGSIVVMGVSGSGKSSVGEAIAEACG-----YPFIEGDALHPPENIRKMSEGIPLTDDDRWPWLAAIGE---RL-ASR   86 (202)
T ss_dssp             CCSSCEEEECSTTSCHHHHHHHHHHHHT-----CCEEEGGGGCCHHHHHHHHHTCCCCHHHHHHHHHHHHH---HH-TSS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC-----CEEEeCCcCcchhhHHHHhcCCCCCchhhHHHHHHHHH---HH-hcC
Confidence            4467899999999999999999999873     447888876421     112223333333333333222   22 445


Q ss_pred             cceeeccCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCcccc---ccccccccCCCCC--CCeE
Q 024315          175 VICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKG---FTGIDDPYEPPLN--CEVG  249 (269)
Q Consensus       175 ~~~iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~---~~~i~~~~e~p~~--~e~~  249 (269)
                      ..++++........++.+..+... ++..|++++|.+.+.+|..+      |.++...   +..+...+++|..  ++++
T Consensus        87 ~~vivd~~~~~~~~~~~l~~~~~~-~~~vi~l~~~~e~~~~Rl~~------R~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (202)
T 3t61_A           87 EPVVVSCSALKRSYRDKLRESAPG-GLAFVFLHGSESVLAERMHH------RTGHFMPSSLLQTQLETLEDPRGEVRTVA  159 (202)
T ss_dssp             SCCEEECCCCSHHHHHHHHHTSTT-CCEEEEEECCHHHHHHHHHH------HHSSCCCHHHHHHHHHHCCCCTTSTTEEE
T ss_pred             CCEEEECCCCCHHHHHHHHHhcCC-CeEEEEEeCCHHHHHHHHHH------hhccCCCHHHHHHHHHhcCCCCCCCCeEE
Confidence            555665555556667777766643 34558999999999988743      3222111   1222233444432  5789


Q ss_pred             EEcCCCcCHHHHHH-HHhhc
Q 024315          250 VHVWYRFELAETWR-ITKWL  268 (269)
Q Consensus       250 id~~~~~~~~~~~~-i~~~~  268 (269)
                      ||++  .+++++.. |.++|
T Consensus       160 Id~~--~~~~e~~~~I~~~l  177 (202)
T 3t61_A          160 VDVA--QPLAEIVREALAGL  177 (202)
T ss_dssp             EESS--SCHHHHHHHHHHHH
T ss_pred             EeCC--CCHHHHHHHHHHHH
Confidence            9985  67888777 76654

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.32  E-value=1.6e-12  Score=116.77  Aligned_cols=130  Identities=15%  Similarity=0.190  Sum_probs=83.6

Q ss_pred             eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHHH-------H
Q 024315           90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIR-------R  162 (269)
Q Consensus        90 ~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~-------~  162 (269)
                      ...+++++.+++|++++|+|+||||||||+++|+|.+. +.+|.|.++|. +.. +..+..+-+....+++.       .
T Consensus        52 ~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~-p~~G~I~~~g~-i~~-v~Q~~~l~~~tv~enl~~~~~~~~~  128 (290)
T 2bbs_A           52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE-PSEGKIKHSGR-ISF-CSQNSWIMPGTIKENIIGVSYDEYR  128 (290)
T ss_dssp             CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC-EEEEEEECCSC-EEE-ECSSCCCCSSBHHHHHHTTCCCHHH
T ss_pred             eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-CCCcEEEECCE-EEE-EeCCCccCcccHHHHhhCcccchHH
Confidence            45677899999999999999999999999999999884 56899999873 110 00000000001111110       0


Q ss_pred             HHHH------HHHHHhCCc------ceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHH
Q 024315          163 IGEV------AKLFADAGV------ICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL  224 (269)
Q Consensus       163 l~~~------a~~~~~~g~------~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~  224 (269)
                      ..+.      ...+.....      ...+...++++++| ..+++++.++++  +++|||+..++....+.+.+.
T Consensus       129 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~l--llLDEPts~LD~~~~~~i~~~  201 (290)
T 2bbs_A          129 YRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADL--YLLDSPFGYLDVLTEKEIFES  201 (290)
T ss_dssp             HHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSE--EEEESTTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCE--EEEECCcccCCHHHHHHHHHH
Confidence            0000      011111110      00123567777777 699999999999  999999999999888887764

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=99.32  E-value=1.1e-11  Score=108.90  Aligned_cols=157  Identities=17%  Similarity=0.201  Sum_probs=91.6

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHHHHH-HH-HHHHHHhCCcce
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRI-GE-VAKLFADAGVIC  177 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~l-~~-~a~~~~~~g~~~  177 (269)
                      .++.+|+|+|++||||||+++.|+..+...|...+.++.|.++..+..   +..... ...+.. .. +...+..  ..+
T Consensus         2 ~~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~~---~~~~~e-~~~~~~~~~~i~~~l~~--~~v   75 (260)
T 3a4m_A            2 GDIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPV---WKEKYE-EFIKKSTYRLIDSALKN--YWV   75 (260)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSSS---CCGGGH-HHHHHHHHHHHHHHHTT--SEE
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHhh---hhHHHH-HHHHHHHHHHHHHHhhC--CEE
Confidence            356799999999999999999999987544445555788887754432   333211 111111 11 1222222  344


Q ss_pred             eeccCChHHHHHHHHHHhCCC--CCccEEEEeCChhHHHhcChhhHHHHHhcCcc--ccccccccccCCCC------CCC
Q 024315          178 IACLISPYRKDRDACRSMLPE--GDFIEVFMDVPLQVCEARDPKGLYKLAREGKV--KGFTGIDDPYEPPL------NCE  247 (269)
Q Consensus       178 iv~~~~~~~~~r~~ar~ll~~--~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~--~~~~~i~~~~e~p~------~~e  247 (269)
                      +++.....+..+..+..++..  .....|++++|.+.|.+|..++      ....  ..+..+...|+.|.      .+.
T Consensus        76 IiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R------~~~~~~~~l~~~~~~~e~~~~~~~~~~~~  149 (260)
T 3a4m_A           76 IVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIER------GEKIPNEVIKKMYEKFDEPGKKYKWDEPF  149 (260)
T ss_dssp             EECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHT------TCSSCHHHHHHHHHHCCCTTSSCGGGCCS
T ss_pred             EEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhC------CCCCCHHHHHHHHHHhcCccccCCCCCCE
Confidence            555444344445544443321  1345589999999999987442      1111  11222234466553      468


Q ss_pred             eEEEcCCCcCHHHHHH-HHhhc
Q 024315          248 VGVHVWYRFELAETWR-ITKWL  268 (269)
Q Consensus       248 ~~id~~~~~~~~~~~~-i~~~~  268 (269)
                      ++||++...++++++. |.+++
T Consensus       150 ~~Id~~~~~~~~ei~~~I~~~l  171 (260)
T 3a4m_A          150 LIIDTTKDIDFNEIAKKLIEKS  171 (260)
T ss_dssp             EEEETTSCCCHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHHHHhcc
Confidence            9999975568888877 66553

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.32  E-value=1e-11  Score=102.46  Aligned_cols=114  Identities=20%  Similarity=0.235  Sum_probs=66.2

Q ss_pred             cceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHHHHHHHHHHHHHhCC
Q 024315           95 QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAG  174 (269)
Q Consensus        95 ~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~l~~~a~~~~~~g  174 (269)
                      ++|.+++|++++|+|+||||||||++.+.+-       ...++.+.++..+..+.+ ...-....+..+..........+
T Consensus         2 vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~-------~~~~~~d~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g   73 (171)
T 4gp7_A            2 MKLTIPELSLVVLIGSSGSGKSTFAKKHFKP-------TEVISSDFCRGLMSDDEN-DQTVTGAAFDVLHYIVSKRLQLG   73 (171)
T ss_dssp             EEEEEESSEEEEEECCTTSCHHHHHHHHSCG-------GGEEEHHHHHHHHCSSTT-CGGGHHHHHHHHHHHHHHHHHTT
T ss_pred             ccccCCCCEEEEEECCCCCCHHHHHHHHccC-------CeEEccHHHHHHhcCccc-chhhHHHHHHHHHHHHHHHHhCC
Confidence            5788999999999999999999999964311       112333333211111111 01001111122222222233445


Q ss_pred             cceeeccC---ChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcCh
Q 024315          175 VICIACLI---SPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDP  218 (269)
Q Consensus       175 ~~~iv~~~---~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~  218 (269)
                      ...+....   +..+++| ..+++++.++++  +++|+|++.|+.+..
T Consensus        74 ~~~~~~~~~~~s~g~~qrv~iAral~~~p~~--lllDEPt~~Ld~~~~  119 (171)
T 4gp7_A           74 KLTVVDATNVQESARKPLIEMAKDYHCFPVA--VVFNLPEKVCQERNK  119 (171)
T ss_dssp             CCEEEESCCCSHHHHHHHHHHHHHTTCEEEE--EEECCCHHHHHHHHH
T ss_pred             CeEEEECCCCCHHHHHHHHHHHHHcCCcEEE--EEEeCCHHHHHHHHh
Confidence            54443322   3444555 688888888877  999999999999854

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.31  E-value=1e-12  Score=138.68  Aligned_cols=134  Identities=21%  Similarity=0.232  Sum_probs=93.2

Q ss_pred             eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhH-------HHH
Q 024315           91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDR-------VEN  159 (269)
Q Consensus        91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~-------~~~  159 (269)
                      ..+++++++++|++++|+|+||||||||+++|.|++ ++.+|.|.++|.++..    .++..+++.+|+.       +++
T Consensus      1048 ~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~-~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eN 1126 (1284)
T 3g5u_A         1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFY-DPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAEN 1126 (1284)
T ss_dssp             SBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSS-CCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHH
T ss_pred             eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-CCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHH
Confidence            456779999999999999999999999999999988 5779999999988763    2334444444322       111


Q ss_pred             H--------------HHHHHHH--HHHH-h--CCccee----eccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHh
Q 024315          160 I--------------RRIGEVA--KLFA-D--AGVICI----ACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEA  215 (269)
Q Consensus       160 ~--------------~~l~~~a--~~~~-~--~g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~  215 (269)
                      +              ....+.+  ..+. .  .|+...    ...++++++|| ..+|+++.++++  +++|||+..+|.
T Consensus      1127 i~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~i--LiLDEpTs~lD~ 1204 (1284)
T 3g5u_A         1127 IAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHI--LLLDEATSALDT 1204 (1284)
T ss_dssp             HTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSS--EEEESCSSSCCH
T ss_pred             HhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCE--EEEeCCcccCCH
Confidence            1              1111111  0111 1  122111    23467888887 699999999999  999999999999


Q ss_pred             cChhhHHHHHhc
Q 024315          216 RDPKGLYKLARE  227 (269)
Q Consensus       216 R~~k~l~~~~r~  227 (269)
                      ...+.+++.+++
T Consensus      1205 ~~~~~i~~~l~~ 1216 (1284)
T 3g5u_A         1205 ESEKVVQEALDK 1216 (1284)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            887777766553

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.28  E-value=1.6e-12  Score=137.21  Aligned_cols=131  Identities=18%  Similarity=0.171  Sum_probs=87.8

Q ss_pred             eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhh-------HHHH
Q 024315           91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAED-------RVEN  159 (269)
Q Consensus        91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~-------~~~~  159 (269)
                      ..+++++++++|++++|+|+||||||||+++|.|.+ ++.+|.|.++|.++..    .++..+++.+|+       .+++
T Consensus       405 vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~-~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eN  483 (1284)
T 3g5u_A          405 ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLY-DPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAEN  483 (1284)
T ss_dssp             SEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSS-CCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHH
T ss_pred             ceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHH
Confidence            345668999999999999999999999999999988 5779999999988753    122222322221       1122


Q ss_pred             HHH---------HHH---H---HHHHHh--CCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcC
Q 024315          160 IRR---------IGE---V---AKLFAD--AGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD  217 (269)
Q Consensus       160 ~~~---------l~~---~---a~~~~~--~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~  217 (269)
                      +..         +.+   .   ......  .|...    -...+++++++| .++|+++.++++  +++|||+..++...
T Consensus       484 i~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~i--liLDEpts~LD~~~  561 (1284)
T 3g5u_A          484 IRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKI--LLLDEATSALDTES  561 (1284)
T ss_dssp             HHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSE--EEEESTTCSSCHHH
T ss_pred             HhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCE--EEEECCCCCCCHHH
Confidence            110         000   0   011111  12211    233567888887 699999999999  99999999999876


Q ss_pred             hhhHHHH
Q 024315          218 PKGLYKL  224 (269)
Q Consensus       218 ~k~l~~~  224 (269)
                      .+.+.+.
T Consensus       562 ~~~i~~~  568 (1284)
T 3g5u_A          562 EAVVQAA  568 (1284)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6555433

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.27  E-value=6.7e-12  Score=121.61  Aligned_cols=129  Identities=14%  Similarity=0.077  Sum_probs=84.6

Q ss_pred             cceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc---ccccCCCCChhhHHHHHHH------HHH
Q 024315           95 QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH---GLNRDLSFKAEDRVENIRR------IGE  165 (269)
Q Consensus        95 ~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~---~l~~~~g~~~~~~~~~~~~------l~~  165 (269)
                      .++.+++|++++|+|+||||||||+++|++.+ .+.+|.|.+++..+..   ........+..+.......      ...
T Consensus       287 ~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~  365 (538)
T 3ozx_A          287 DNGEAKEGEIIGILGPNGIGKTTFARILVGEI-TADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWF  365 (538)
T ss_dssp             CCEEEETTCEEEEECCTTSSHHHHHHHHTTSS-CCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHH
T ss_pred             ccceECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHH
Confidence            36778999999999999999999999999988 4668888887765431   1111111111111111000      000


Q ss_pred             HHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315          166 VAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       166 ~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      ....+...++..    .+..+|+++++| .++++++.++++  +++|||+..++......+++.++
T Consensus       366 ~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~l--LlLDEPT~gLD~~~~~~i~~~l~  429 (538)
T 3ozx_A          366 FEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADL--YVLDQPSSYLDVEERYIVAKAIK  429 (538)
T ss_dssp             HHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSE--EEEESTTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEeCCccCCCHHHHHHHHHHHH
Confidence            112222333322    244567788887 699999999999  99999999999988877665544

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.22  E-value=5.4e-12  Score=122.27  Aligned_cols=143  Identities=17%  Similarity=0.189  Sum_probs=90.5

Q ss_pred             cceEEeeCce-eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEE---------EECCeecCc------
Q 024315           80 TNILWHKNSV-DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTY---------ILDGDNCRH------  143 (269)
Q Consensus        80 ~~~~~~~~~v-~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i---------~l~g~~~~~------  143 (269)
                      .++++.++.. ....+++ .+++|++++|+|+||||||||+++|+|.+. +.+|.+         .++|.++..      
T Consensus        25 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~-p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~  102 (538)
T 1yqt_A           25 EDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLI-PNLCGDNDSWDGVIRAFRGNELQNYFEKLK  102 (538)
T ss_dssp             CCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC-CCTTTTCCSHHHHHHHTTTSTHHHHHHHHH
T ss_pred             cCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCccCcchhhhHHhhCCccHHHHHHHHH
Confidence            5788877654 3567788 899999999999999999999999999884 445543         234433210      


Q ss_pred             ccccCCCCChh-----------hHHHHHHHH---HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEE
Q 024315          144 GLNRDLSFKAE-----------DRVENIRRI---GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEV  204 (269)
Q Consensus       144 ~l~~~~g~~~~-----------~~~~~~~~l---~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i  204 (269)
                      .....+++..+           ...+.+...   ..+..++...++..    .+..+++++++| .++++++.++++  +
T Consensus       103 ~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~l--L  180 (538)
T 1yqt_A          103 NGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATF--Y  180 (538)
T ss_dssp             TTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSE--E
T ss_pred             HHhhhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCE--E
Confidence            00000111000           111111100   11233444445432    234557777777 699999999999  9


Q ss_pred             EEeCChhHHHhcChhhHHHHHh
Q 024315          205 FMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       205 ~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      ++|||+..++....+.+.+.++
T Consensus       181 lLDEPTs~LD~~~~~~l~~~L~  202 (538)
T 1yqt_A          181 FFDEPSSYLDIRQRLNAARAIR  202 (538)
T ss_dssp             EEESTTTTCCHHHHHHHHHHHH
T ss_pred             EEECCcccCCHHHHHHHHHHHH
Confidence            9999999999988777655543

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.20  E-value=3.6e-11  Score=118.07  Aligned_cols=130  Identities=18%  Similarity=0.163  Sum_probs=83.2

Q ss_pred             cCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC---cccccCCCCChhhHHHHH-H-HH---H
Q 024315           93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR---HGLNRDLSFKAEDRVENI-R-RI---G  164 (269)
Q Consensus        93 ~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~---~~l~~~~g~~~~~~~~~~-~-~l---~  164 (269)
                      +..++.+++|++++|+||||||||||+++|+|.+. +.+|.|.+.. .+.   ........++..+..... . ..   .
T Consensus       373 ~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~-p~~G~I~~~~-~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~  450 (607)
T 3bk7_A          373 EVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE-PTEGKVEWDL-TVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNF  450 (607)
T ss_dssp             EECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC-CSBSCCCCCC-CEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHH
T ss_pred             EecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEEee-EEEEEecCccCCCCCcHHHHHHhhhccCCCHHH
Confidence            34456689999999999999999999999999884 5577776521 111   111111122222222111 0 00   1


Q ss_pred             HHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315          165 EVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       165 ~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      .+...+...++..    .+..+|+++++| .++++++.++++  +++|||+..++......+++.++
T Consensus       451 ~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~l--LlLDEPt~~LD~~~~~~l~~~l~  515 (607)
T 3bk7_A          451 YKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADI--YLLDEPSAYLDVEQRLAVSRAIR  515 (607)
T ss_dssp             HHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSE--EEEECTTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCE--EEEeCCccCCCHHHHHHHHHHHH
Confidence            1122333334322    244567788887 689999999999  99999999999998888776654

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=99.17  E-value=4.9e-11  Score=98.81  Aligned_cols=163  Identities=15%  Similarity=0.138  Sum_probs=83.5

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHH-----HHHHHHHHHHHhCC
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENI-----RRIGEVAKLFADAG  174 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~-----~~l~~~a~~~~~~g  174 (269)
                      +++.+|+|+|++||||||+++.|+..+..     .+++.|.++..+....+....+....+     ..+..........|
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~-----~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g   77 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALATGLRL-----PLLSKDAFKEVMFDGLGWSDREWSRRVGATAIMMLYHTAATILQSG   77 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHHHHTC-----CEEEHHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcCC-----eEecHHHHHHHHHHhcCccchHHHHHhhHHHHHHHHHHHHHHHhCC
Confidence            46789999999999999999999998742     367777765433222222222111111     11112222223345


Q ss_pred             cceeeccCChHHHHHHHHHHhCC--CCCccEEEEeCChhHHHhcChhhHHHHHh-----cCcccc---ccccccccCCCC
Q 024315          175 VICIACLISPYRKDRDACRSMLP--EGDFIEVFMDVPLQVCEARDPKGLYKLAR-----EGKVKG---FTGIDDPYEPPL  244 (269)
Q Consensus       175 ~~~iv~~~~~~~~~r~~ar~ll~--~~~~~~i~ld~p~~~l~~R~~k~l~~~~r-----~g~~~~---~~~i~~~~e~p~  244 (269)
                      ..++++...........+.++..  ......|++++|.+.+.+|..++-....|     ...+..   +..+.+.|+++.
T Consensus        78 ~~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (193)
T 2rhm_A           78 QSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRIAQGARHPGHCDDRSPADLELVRSRGDIPPLP  157 (193)
T ss_dssp             CCEEEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHHHTTCC--------CHHHHHHHHHSCCCCCCC
T ss_pred             CeEEEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhcCccccCcccccCccCcchhhHHHHhcCCCcc
Confidence            54554433322222222222221  12334589999999999997554210001     011111   112334466554


Q ss_pred             --CCCeEEEcCCC--cCHHHHHH-HHhh
Q 024315          245 --NCEVGVHVWYR--FELAETWR-ITKW  267 (269)
Q Consensus       245 --~~e~~id~~~~--~~~~~~~~-i~~~  267 (269)
                        .+.++|||+..  ...+++.. |.++
T Consensus       158 ~~~~~~~Idt~~~~~~~~~~i~~~i~~~  185 (193)
T 2rhm_A          158 LGGPLLTVDTTFPEQIDMNAIVQWVRQH  185 (193)
T ss_dssp             CCSCEEEEECSSGGGCCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCcccCHHHHHHHHHHH
Confidence              46799999643  23455554 4444

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.17  E-value=5.5e-11  Score=115.23  Aligned_cols=130  Identities=18%  Similarity=0.175  Sum_probs=82.7

Q ss_pred             cCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC---cccccCCCCChhhHHHHH-H-HH---H
Q 024315           93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR---HGLNRDLSFKAEDRVENI-R-RI---G  164 (269)
Q Consensus        93 ~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~---~~l~~~~g~~~~~~~~~~-~-~l---~  164 (269)
                      +..++.+++|++++|+|+||||||||+++|+|.+. +.+|.|.+.. .+.   ........++..+..... . ..   .
T Consensus       303 ~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~-p~~G~i~~~~-~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~  380 (538)
T 1yqt_A          303 EVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE-PTEGKIEWDL-TVAYKPQYIKADYEGTVYELLSKIDASKLNSNF  380 (538)
T ss_dssp             EECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC-CSBCCCCCCC-CEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHH
T ss_pred             EeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECc-eEEEEecCCcCCCCCcHHHHHHhhhccCCCHHH
Confidence            34566789999999999999999999999999884 5567765521 111   111111122222221111 0 00   0


Q ss_pred             HHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315          165 EVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       165 ~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      .....+...++..    .+..+|+++++| ..+++++.++++  +++|||+..++......+++.++
T Consensus       381 ~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~l--LlLDEPt~~LD~~~~~~i~~~l~  445 (538)
T 1yqt_A          381 YKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADI--YLLDEPSAYLDVEQRLAVSRAIR  445 (538)
T ss_dssp             HHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSE--EEEECTTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCE--EEEeCCcccCCHHHHHHHHHHHH
Confidence            1122333334422    234567777777 688999999999  99999999999998888776644

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.16  E-value=9.2e-12  Score=122.24  Aligned_cols=143  Identities=17%  Similarity=0.195  Sum_probs=89.9

Q ss_pred             cceEEeeCce-eeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEE---------EECCeecCcc-----
Q 024315           80 TNILWHKNSV-DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTY---------ILDGDNCRHG-----  144 (269)
Q Consensus        80 ~~~~~~~~~v-~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i---------~l~g~~~~~~-----  144 (269)
                      .++++.++.. ....+++ .+++|++++|+|+||||||||+++|+|.+. +.+|.+         .++|.++...     
T Consensus        95 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~-p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~  172 (607)
T 3bk7_A           95 EDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLI-PNLCEDNDSWDNVIRAFRGNELQNYFERLK  172 (607)
T ss_dssp             GSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSC-CCTTTTCCCHHHHHHHTTTSTHHHHHHHHH
T ss_pred             CCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCC-CCCCccccccchhhheeCCEehhhhhhhhh
Confidence            4677777654 2667778 899999999999999999999999999884 445553         2344332110     


Q ss_pred             -cccCCCCChh-----------hHHHHHHHH---HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEE
Q 024315          145 -LNRDLSFKAE-----------DRVENIRRI---GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEV  204 (269)
Q Consensus       145 -l~~~~g~~~~-----------~~~~~~~~l---~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i  204 (269)
                       .....++..+           ...+.+...   ..+..++...++..    .+..+|+++++| .++++++.++++  +
T Consensus       173 ~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~l--L  250 (607)
T 3bk7_A          173 NGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHF--Y  250 (607)
T ss_dssp             HTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSE--E
T ss_pred             hhhcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCE--E
Confidence             0000110000           011111100   01223344445432    234567777777 699999999999  9


Q ss_pred             EEeCChhHHHhcChhhHHHHHh
Q 024315          205 FMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       205 ~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      ++|||+..++...+..+.+.++
T Consensus       251 lLDEPTs~LD~~~~~~l~~~L~  272 (607)
T 3bk7_A          251 FFDEPSSYLDIRQRLKVARVIR  272 (607)
T ss_dssp             EEECTTTTCCHHHHHHHHHHHH
T ss_pred             EEECCcccCCHHHHHHHHHHHH
Confidence            9999999999988777655443

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=99.14  E-value=1.3e-11  Score=103.87  Aligned_cols=46  Identities=26%  Similarity=0.334  Sum_probs=30.8

Q ss_pred             eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315           91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (269)
Q Consensus        91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~  141 (269)
                      ..+++++.+.+|.+++|+|++||||||+++.|++.+..     .+++.+++
T Consensus        14 ~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~-----~~i~~d~~   59 (199)
T 3vaa_A           14 GTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLNV-----PFIDLDWY   59 (199)
T ss_dssp             ----------CCCEEEEECCTTSCHHHHHHHHHHHHTC-----CEEEHHHH
T ss_pred             CCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcCC-----CEEcchHH
Confidence            45678899999999999999999999999999998843     25666654

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.14  E-value=5.2e-11  Score=118.06  Aligned_cols=141  Identities=18%  Similarity=0.200  Sum_probs=79.3

Q ss_pred             EEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHH---------------------HHHHHhhccCC-------ccEE
Q 024315           83 LWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLA---------------------CALSQALHWRG-------KLTY  134 (269)
Q Consensus        83 ~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla---------------------~~L~~~l~~~~-------~g~i  134 (269)
                      .+........++++|.+++|++++|+||||||||||+                     +.+.+... ++       .+.+
T Consensus        25 ~~~~~~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~-~~~~~i~~~~~~i  103 (670)
T 3ux8_A           25 IVKGARAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEK-PDVDAIEGLSPAI  103 (670)
T ss_dssp             EEEEECSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC---------------CCCSEEESCCCEE
T ss_pred             EEcCCCccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhccccc-CCccceeccccce
Confidence            3343345568899999999999999999999999997                     66666553 33       3455


Q ss_pred             EECCeecCcccccCC-----------------C-------------CChhhHHHHH-----------------HHHHHHH
Q 024315          135 ILDGDNCRHGLNRDL-----------------S-------------FKAEDRVENI-----------------RRIGEVA  167 (269)
Q Consensus       135 ~l~g~~~~~~l~~~~-----------------g-------------~~~~~~~~~~-----------------~~l~~~a  167 (269)
                      .+++.+.....+..+                 +             ++..+.....                 ..+.+..
T Consensus       104 ~~~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (670)
T 3ux8_A          104 SIDQKTTSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL  183 (670)
T ss_dssp             EESSCC-----CCBHHHHTTCC-------------------------CC--------------------------CHHHH
T ss_pred             EecCchhhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHH
Confidence            666544321100000                 0             0000000000                 0000111


Q ss_pred             HHHHhCCcc-----eeeccCChHHHHH-HHHHHhCCCCC--ccEEEEeCChhHHHhcChhhHHHHHh
Q 024315          168 KLFADAGVI-----CIACLISPYRKDR-DACRSMLPEGD--FIEVFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       168 ~~~~~~g~~-----~iv~~~~~~~~~r-~~ar~ll~~~~--~~~i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      ..+...++.     ..+..+|+++++| .++++++.+++  +  +++|||+..++....+.+.+.++
T Consensus       184 ~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~l--LlLDEPtsgLD~~~~~~l~~~l~  248 (670)
T 3ux8_A          184 GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVL--YVLDEPSIGLHQRDNDRLIATLK  248 (670)
T ss_dssp             HHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCE--EEEECTTTTCCGGGHHHHHHHHH
T ss_pred             HHHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCE--EEEECCccCCCHHHHHHHHHHHH
Confidence            123334432     2344567777777 69999999887  7  99999999999999888765544

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.12  E-value=5.2e-11  Score=116.87  Aligned_cols=127  Identities=17%  Similarity=0.173  Sum_probs=77.9

Q ss_pred             ecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEE-----------EECCeecCc----ccccCC------CCChh--
Q 024315           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTY-----------ILDGDNCRH----GLNRDL------SFKAE--  154 (269)
Q Consensus        98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i-----------~l~g~~~~~----~l~~~~------g~~~~--  154 (269)
                      .+.+|++++|+||||||||||+++|++++. +.+|.+           .+.|..+..    .+...+      .+...  
T Consensus        99 ~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~-P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (608)
T 3j16_B           99 TPRPGQVLGLVGTNGIGKSTALKILAGKQK-PNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIP  177 (608)
T ss_dssp             CCCTTSEEEEECCTTSSHHHHHHHHHTSSC-CCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHH
T ss_pred             CCCCCCEEEEECCCCChHHHHHHHHhcCCC-CCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhh
Confidence            578999999999999999999999999884 556655           222222110    000000      00000  


Q ss_pred             --------hHHHHHHH-----HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhc
Q 024315          155 --------DRVENIRR-----IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEAR  216 (269)
Q Consensus       155 --------~~~~~~~~-----l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R  216 (269)
                              ...+.+..     ...+..++...++..    .+..+++++++| .++++++.++++  +++|||+..++..
T Consensus       178 ~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~l--lllDEPts~LD~~  255 (608)
T 3j16_B          178 RAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADV--YMFDEPSSYLDVK  255 (608)
T ss_dssp             HHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSE--EEEECTTTTCCHH
T ss_pred             hhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCE--EEEECcccCCCHH
Confidence                    00000000     011223333344422    244567777777 699999999998  9999999999998


Q ss_pred             ChhhHHHHHhc
Q 024315          217 DPKGLYKLARE  227 (269)
Q Consensus       217 ~~k~l~~~~r~  227 (269)
                      ....+.+.+++
T Consensus       256 ~~~~l~~~l~~  266 (608)
T 3j16_B          256 QRLNAAQIIRS  266 (608)
T ss_dssp             HHHHHHHHHHG
T ss_pred             HHHHHHHHHHH
Confidence            87777666553

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.09  E-value=4.1e-11  Score=116.07  Aligned_cols=125  Identities=18%  Similarity=0.198  Sum_probs=78.7

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEE-----------EECCeecCc----------ccccCCCCChh---
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTY-----------ILDGDNCRH----------GLNRDLSFKAE---  154 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i-----------~l~g~~~~~----------~l~~~~g~~~~---  154 (269)
                      .++|++++|+||||||||||+++|++.+. |..|.+           .++|.++..          .......+...   
T Consensus        22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~-p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (538)
T 3ozx_A           22 PKNNTILGVLGKNGVGKTTVLKILAGEII-PNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASK  100 (538)
T ss_dssp             CCTTEEEEEECCTTSSHHHHHHHHTTSSC-CCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGT
T ss_pred             CCCCCEEEEECCCCCcHHHHHHHHhcCCC-CCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhh
Confidence            46899999999999999999999999884 556765           455544311          00000111111   


Q ss_pred             ----hHHHHHHHH---HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHH
Q 024315          155 ----DRVENIRRI---GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLY  222 (269)
Q Consensus       155 ----~~~~~~~~l---~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~  222 (269)
                          ...+.+...   .....++...++..    .+..+++++++| .++++++.++++  +++|||+..++......+.
T Consensus       101 ~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~i--lllDEPts~LD~~~~~~l~  178 (538)
T 3ozx_A          101 FLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADV--YIFDQPSSYLDVRERMNMA  178 (538)
T ss_dssp             TCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSE--EEEESTTTTCCHHHHHHHH
T ss_pred             hccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEECCcccCCHHHHHHHH
Confidence                001111110   01222333444422    244567777777 699999999999  9999999999998887776


Q ss_pred             HHHh
Q 024315          223 KLAR  226 (269)
Q Consensus       223 ~~~r  226 (269)
                      +.++
T Consensus       179 ~~l~  182 (538)
T 3ozx_A          179 KAIR  182 (538)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6554

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.09  E-value=1.5e-10  Score=118.46  Aligned_cols=58  Identities=21%  Similarity=0.161  Sum_probs=46.9

Q ss_pred             cceEEeeCc--eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECC
Q 024315           80 TNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG  138 (269)
Q Consensus        80 ~~~~~~~~~--v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g  138 (269)
                      .++++.+..  ....+++++.+.+|++++|+|+||||||||++.|+|.+ .+.+|.|.+++
T Consensus       675 ~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll-~P~sG~I~~~~  734 (986)
T 2iw3_A          675 TNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGEL-LPTSGEVYTHE  734 (986)
T ss_dssp             EEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSS-CCSEEEEEECT
T ss_pred             EeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEEcC
Confidence            345554432  33456789999999999999999999999999999988 46689999975

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=99.06  E-value=1.4e-09  Score=90.90  Aligned_cols=56  Identities=23%  Similarity=0.269  Sum_probs=37.3

Q ss_pred             ceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhH
Q 024315           96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDR  156 (269)
Q Consensus        96 sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~  156 (269)
                      |+.+.+|++++|+||||||||||++.|++.++     .+.+++.....    ......+|..+..
T Consensus         1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~   60 (205)
T 3tr0_A            1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-----EIKISISHTTRPKRPGDQEGVDYFFIDE   60 (205)
T ss_dssp             ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-----SEEECCCEECSCCCTTCCBTTTBEECCH
T ss_pred             CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-----CeEEeceeccCCCchhHhcCceEEeccH
Confidence            35667899999999999999999999999863     35666655432    1223345555443

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=99.00  E-value=7.3e-10  Score=91.01  Aligned_cols=158  Identities=14%  Similarity=0.073  Sum_probs=72.0

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEEC----CeecCccccc-CCCCCh-hhHHHHHHHHHHHHHHHHhC
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD----GDNCRHGLNR-DLSFKA-EDRVENIRRIGEVAKLFADA  173 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~----g~~~~~~l~~-~~g~~~-~~~~~~~~~l~~~a~~~~~~  173 (269)
                      .++.+|+|+|++||||||+++.|+..+..+    ++++    |+.++..+.. ...+.. +.+.+....  .+...+...
T Consensus         3 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~----~i~d~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~--~i~~~l~~~   76 (183)
T 2vli_A            3 MRSPIIWINGPFGVGKTHTAHTLHERLPGS----FVFEPEEMGQALRKLTPGFSGDPQEHPMWIPLMLD--ALQYASREA   76 (183)
T ss_dssp             --CCEEEEECCC----CHHHHHHHHHSTTC----EECCTHHHHHHHHHTSTTCCSCGGGSTTHHHHHHH--HHHHHHHHC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhcCCC----EEEchhhhHHHHHHhCccccchhhhhHHHHHHHHH--HHHHHHHhC
Confidence            357799999999999999999999877532    2224    2222221110 011111 111111111  112223332


Q ss_pred             CcceeeccCChHHHHHHHHHHhCC--CCCccEEEEeCChhHHHhcChhhHHHHHhcCccccccccccccCCCCCCCeEEE
Q 024315          174 GVICIACLISPYRKDRDACRSMLP--EGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEVGVH  251 (269)
Q Consensus       174 g~~~iv~~~~~~~~~r~~ar~ll~--~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~~i~~~~e~p~~~e~~id  251 (269)
                      +..++++........+......+.  ...+..|++++|.+.+.+|..++-..   .-....+..+...++++ ....+||
T Consensus        77 g~~vi~d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~~e~~~~R~~~R~~r---~~~~~~~~~~~~~~~~~-~~~~~Id  152 (183)
T 2vli_A           77 AGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRDGQP---QVNVGTVEDRLNELRGE-QFQTHID  152 (183)
T ss_dssp             SSCEEEEECCCCHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHHTC-------CCHHHHHHHHHHHTSG-GGCSEEE
T ss_pred             CCcEEEeeeccCHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHHHhcccc---chhHHHHHHHHHhhccc-ccceEee
Confidence            444444433222222222222221  12234489999999999997654311   00001111222333443 2234999


Q ss_pred             cCCCcCHHHHHH-HHhhc
Q 024315          252 VWYRFELAETWR-ITKWL  268 (269)
Q Consensus       252 ~~~~~~~~~~~~-i~~~~  268 (269)
                      ++ ..+++++.. |.++|
T Consensus       153 ~~-~~~~~~~~~~I~~~l  169 (183)
T 2vli_A          153 TA-GLGTQQVAEQIAAQV  169 (183)
T ss_dssp             CT-TCCHHHHHHHHHHHH
T ss_pred             CC-CCCHHHHHHHHHHHH
Confidence            84 567888877 66654

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.00  E-value=1.2e-09  Score=111.80  Aligned_cols=141  Identities=18%  Similarity=0.153  Sum_probs=87.5

Q ss_pred             ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHH-hhc--c-CC-ccEEEECCeecCcccccCCCCChhh
Q 024315           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQ-ALH--W-RG-KLTYILDGDNCRHGLNRDLSFKAED  155 (269)
Q Consensus        81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~-~l~--~-~~-~g~i~l~g~~~~~~l~~~~g~~~~~  155 (269)
                      ++++.++.....++++|.+.+|++++|+|+||||||||+++|++ .+.  + .. ...+++..+ .. .+.  ..++..+
T Consensus       440 ~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~-~~-~~~--~~ltv~e  515 (986)
T 2iw3_A          440 EFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHD-ID-GTH--SDTSVLD  515 (986)
T ss_dssp             EEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCC-CC-CCC--TTSBHHH
T ss_pred             eEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEccc-cc-ccc--cCCcHHH
Confidence            56666666667888999999999999999999999999999984 221  0 00 011111111 00 000  0111111


Q ss_pred             HHHH--HHHHHHHHHHHHhCCcc-----eeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          156 RVEN--IRRIGEVAKLFADAGVI-----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       156 ~~~~--~~~l~~~a~~~~~~g~~-----~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      ....  ......+...+...|+.     ..+..+|+++++| .++++++.++++  +++|||+..++....+.+.+.++.
T Consensus       516 ~l~~~~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~l--LLLDEPTs~LD~~~~~~l~~~L~~  593 (986)
T 2iw3_A          516 FVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADI--LLLDEPTNHLDTVNVAWLVNYLNT  593 (986)
T ss_dssp             HHHTTCSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSE--EEEESTTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHhhcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCE--EEEECCccCCCHHHHHHHHHHHHh
Confidence            1000  00001223334444542     1244567777777 699999999999  999999999999998888877765

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=99.00  E-value=9.2e-10  Score=96.21  Aligned_cols=122  Identities=11%  Similarity=0.117  Sum_probs=74.4

Q ss_pred             ecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCccc------ccCCCCChhhHHHH-H-HHHHHHHHH
Q 024315           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL------NRDLSFKAEDRVEN-I-RRIGEVAKL  169 (269)
Q Consensus        98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l------~~~~g~~~~~~~~~-~-~~l~~~a~~  169 (269)
                      ..++|.+++|+|+|||||||+++.|++.+.   .+.+++++|.++..+      ....+....+..+. . ..+..+...
T Consensus        28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~---~~~~~~~~D~~r~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~  104 (253)
T 2p5t_B           28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ---GNIVIIDGDSFRSQHPHYLELQQEYGKDSVEYTKDFAGKMVESLVTK  104 (253)
T ss_dssp             CCSSCEEEEEESCGGGTTHHHHHHHHHHTT---TCCEEECGGGGGTTSTTHHHHHTTCSSTTHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHhcC---CCcEEEecHHHHHhchhHHHHHHHcCchHHHHhhHHHHHHHHHHHHH
Confidence            456789999999999999999999999874   346789999887542      33445554444332 1 222333344


Q ss_pred             HHhCCcceeeccCChHHHHHHHHHHhCCC--CCccEEEEeCChhHHHhcChhhHH
Q 024315          170 FADAGVICIACLISPYRKDRDACRSMLPE--GDFIEVFMDVPLQVCEARDPKGLY  222 (269)
Q Consensus       170 ~~~~g~~~iv~~~~~~~~~r~~ar~ll~~--~~~~~i~ld~p~~~l~~R~~k~l~  222 (269)
                      +...+...+++.......++......+..  ..+..+++++|.+.|..|..++..
T Consensus       105 ~~~~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~~e~~~~R~~~R~~  159 (253)
T 2p5t_B          105 LSSLGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSYLSTLIRYE  159 (253)
T ss_dssp             HHHTTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHHHHH
T ss_pred             HHhcCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHHHH
Confidence            44555444544332222223222222221  233446889999999999766543

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=99.00  E-value=5.6e-10  Score=92.47  Aligned_cols=114  Identities=19%  Similarity=0.197  Sum_probs=64.9

Q ss_pred             ecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccc--cCCCCChhhHHHH---HHHHHHHHHHHHh
Q 024315           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN--RDLSFKAEDRVEN---IRRIGEVAKLFAD  172 (269)
Q Consensus        98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~--~~~g~~~~~~~~~---~~~l~~~a~~~~~  172 (269)
                      .+++|++++|+|+|||||||+++.|++.   ++.|.+.++++++.....  ...++..+.....   ...+...+.....
T Consensus         5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~---~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~   81 (191)
T 1zp6_A            5 DDLGGNILLLSGHPGSGKSTIAEALANL---PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQIAADVAGRYAK   81 (191)
T ss_dssp             -CCTTEEEEEEECTTSCHHHHHHHHHTC---SSSCEEEECTTHHHHTCCSSCCCTTSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHhc---cCCCeEEEcccchhhhhhcccccCCccchhhhhHHHHHHHHHHHHHHhc
Confidence            3578999999999999999999999996   346789999988653221  2235555432211   1122222222333


Q ss_pred             CCcceeeccCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcC
Q 024315          173 AGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARD  217 (269)
Q Consensus       173 ~g~~~iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~  217 (269)
                      .+...++..... .......+.+  ...+..+++.++.+++..|.
T Consensus        82 ~~~~~~~~~~~~-~~~l~~~~~~--~~~~~~ls~~~~~~v~~~R~  123 (191)
T 1zp6_A           82 EGYFVILDGVVR-PDWLPAFTAL--ARPLHYIVLRTTAAEAIERC  123 (191)
T ss_dssp             TSCEEEECSCCC-TTTTHHHHTT--CSCEEEEEEECCHHHHHHHH
T ss_pred             cCCeEEEeccCc-HHHHHHHHhc--CCCeEEEEecCCHHHHHHHH
Confidence            343333332111 0111112211  22344589999999888776

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=98.96  E-value=1.1e-09  Score=108.46  Aligned_cols=35  Identities=31%  Similarity=0.376  Sum_probs=30.9

Q ss_pred             eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHH
Q 024315           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALS  123 (269)
Q Consensus        89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~  123 (269)
                      ....+++++++++|++++|+||||||||||++.|.
T Consensus       335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~  369 (670)
T 3ux8_A          335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL  369 (670)
T ss_dssp             STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred             ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence            34578889999999999999999999999997654

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.96  E-value=1.9e-09  Score=105.88  Aligned_cols=132  Identities=16%  Similarity=0.101  Sum_probs=78.3

Q ss_pred             eccCcceecCCC-----eEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC---cccccCCCCChhhHHHH-HH
Q 024315           91 KRDRQQLLQQKG-----CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR---HGLNRDLSFKAEDRVEN-IR  161 (269)
Q Consensus        91 ~~~r~sl~~~~g-----~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~---~~l~~~~g~~~~~~~~~-~~  161 (269)
                      ..++.+|.+.+|     ++++|+|+||||||||+++|+|++. +.+|.. +....+.   .........+..+.... ..
T Consensus       362 ~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~-p~~G~~-~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~  439 (608)
T 3j16_B          362 TQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK-PDEGQD-IPKLNVSMKPQKIAPKFPGTVRQLFFKKIR  439 (608)
T ss_dssp             ECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC-CSBCCC-CCSCCEEEECSSCCCCCCSBHHHHHHHHCS
T ss_pred             ccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC-CCCCcC-ccCCcEEEecccccccCCccHHHHHHHHhh
Confidence            456778888888     7899999999999999999999885 444531 1110000   00000001111111000 00


Q ss_pred             ----HHHHHHHHHHhCCcc----eeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315          162 ----RIGEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       162 ----~l~~~a~~~~~~g~~----~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                          ........+...++.    ..+..+|+++++| .++++++.++++  +++|||+..++......+++.++
T Consensus       440 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~l--LlLDEPT~gLD~~~~~~i~~ll~  511 (608)
T 3j16_B          440 GQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADI--YLIDEPSAYLDSEQRIICSKVIR  511 (608)
T ss_dssp             STTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSE--EEECCTTTTCCHHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCE--EEEECCCCCCCHHHHHHHHHHHH
Confidence                000111122222322    2345567888888 688999999999  99999999999888777665443

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=98.93  E-value=4.9e-11  Score=104.84  Aligned_cols=55  Identities=18%  Similarity=0.276  Sum_probs=40.7

Q ss_pred             EEee-CceeeccCcceecCC---CeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315           83 LWHK-NSVDKRDRQQLLQQK---GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (269)
Q Consensus        83 ~~~~-~~v~~~~r~sl~~~~---g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~  142 (269)
                      ++.+ ......++.++.+.+   |++++|+|++||||||+++.|++.+..     .+++.+.+.
T Consensus        25 ~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~-----~~~d~d~~~   83 (250)
T 3nwj_A           25 HSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGY-----TFFDCDTLI   83 (250)
T ss_dssp             -------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTC-----EEEEHHHHH
T ss_pred             eEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCC-----cEEeCcHHH
Confidence            4444 344556778999999   999999999999999999999998852     367766553

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=98.92  E-value=3e-09  Score=99.78  Aligned_cols=132  Identities=15%  Similarity=0.085  Sum_probs=83.3

Q ss_pred             cceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHHHHHHHHHHHHHhCC
Q 024315           95 QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAG  174 (269)
Q Consensus        95 ~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~l~~~a~~~~~~g  174 (269)
                      ..+..+++.+|+|+|++||||||+++.|+..+.     .++++.|.+.       .         +..+...+......+
T Consensus       251 ~~~~~~~~~lIil~G~pGSGKSTla~~L~~~~~-----~~~i~~D~~~-------~---------~~~~~~~~~~~l~~g  309 (416)
T 3zvl_A          251 SSLLSPNPEVVVAVGFPGAGKSTFIQEHLVSAG-----YVHVNRDTLG-------S---------WQRCVSSCQAALRQG  309 (416)
T ss_dssp             SCSCCSSCCEEEEESCTTSSHHHHHHHHTGGGT-----CEECCGGGSC-------S---------HHHHHHHHHHHHHTT
T ss_pred             cccCCCCCEEEEEECCCCCCHHHHHHHHHHhcC-----cEEEccchHH-------H---------HHHHHHHHHHHHhcC
Confidence            345567789999999999999999999988663     4577777663       1         111222223333456


Q ss_pred             cceeeccCChHHHHHHHHHHhCCC--CCccEEEEeCChhHHHhcChhhHHHHHhcCcc--ccccccccccCCCCCCC
Q 024315          175 VICIACLISPYRKDRDACRSMLPE--GDFIEVFMDVPLQVCEARDPKGLYKLAREGKV--KGFTGIDDPYEPPLNCE  247 (269)
Q Consensus       175 ~~~iv~~~~~~~~~r~~ar~ll~~--~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~--~~~~~i~~~~e~p~~~e  247 (269)
                      ..++++.......+|..+.+++..  ..+..|++++|.+.|.+|..++.........+  ..+..+...||+|...|
T Consensus       310 ~~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R~~~~~~~~~~~~~~~~~~~~~~e~P~~~E  386 (416)
T 3zvl_A          310 KRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREMTDPSHAPVSDMVMFSYRKQFEPPTLAE  386 (416)
T ss_dssp             CCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHCCCCCGGG
T ss_pred             CcEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHhcCCCCccc
Confidence            667776665555666555554432  34566899999999999986654311111122  11334556788887544

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.91  E-value=7e-09  Score=85.92  Aligned_cols=113  Identities=18%  Similarity=0.125  Sum_probs=65.3

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhH-----HHHHHHHHHHHHHHHhCCcc
Q 024315          102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR-----VENIRRIGEVAKLFADAGVI  176 (269)
Q Consensus       102 g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~-----~~~~~~l~~~a~~~~~~g~~  176 (269)
                      |++++|+|+|||||||+++.|++.+    .|.++++++++.....  .++..+..     ...++.+...+..+...+..
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~~~----~g~~~i~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~   75 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAAQL----DNSAYIEGDIINHMVV--GGYRPPWESDELLALTWKNITDLTVNFLLAQND   75 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHS----SSEEEEEHHHHHTTCC--TTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred             CeEEEEECCCCCcHHHHHHHHhccc----CCeEEEcccchhhhhc--cccccCccchhHHHHHHHHHHHHHHHHHhcCCc
Confidence            6899999999999999999998733    4678999988754321  22222211     11222222333333344444


Q ss_pred             eeeccCChHHHHHHHHHHhC----CCCCccEEEEeCChhHHHhcChhhH
Q 024315          177 CIACLISPYRKDRDACRSML----PEGDFIEVFMDVPLQVCEARDPKGL  221 (269)
Q Consensus       177 ~iv~~~~~~~~~r~~ar~ll----~~~~~~~i~ld~p~~~l~~R~~k~l  221 (269)
                      .+++.... ....+.++.++    ....+..+++++|.+.+..|...+.
T Consensus        76 ~ild~~~~-~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~  123 (189)
T 2bdt_A           76 VVLDYIAF-PDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRK  123 (189)
T ss_dssp             EEEESCCC-HHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSC
T ss_pred             EEEeeccC-HHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhcc
Confidence            44443322 22223333332    1223444789999999999986553

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=98.89  E-value=2.4e-10  Score=97.90  Aligned_cols=48  Identities=21%  Similarity=0.138  Sum_probs=30.9

Q ss_pred             eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (269)
Q Consensus        89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~  141 (269)
                      -+..++++|.+++|++++|+||||||||||++.|++.+ +   |.+.+ +.++
T Consensus        10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p---G~i~~-g~~~   57 (218)
T 1z6g_A           10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P---NYFYF-SVSC   57 (218)
T ss_dssp             ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T---TTEEE-CCCE
T ss_pred             cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C---CcEEE-eecc
Confidence            45567889999999999999999999999999999987 3   56777 5443

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=98.86  E-value=3.9e-09  Score=91.77  Aligned_cols=66  Identities=12%  Similarity=0.138  Sum_probs=41.9

Q ss_pred             cEEEEeCChhHHHhcChhhHHHHHhcCc-------ccccccccc-ccCCCCCCC---eEEEcCCCcCHHHHHH-HHhhc
Q 024315          202 IEVFMDVPLQVCEARDPKGLYKLAREGK-------VKGFTGIDD-PYEPPLNCE---VGVHVWYRFELAETWR-ITKWL  268 (269)
Q Consensus       202 ~~i~ld~p~~~l~~R~~k~l~~~~r~g~-------~~~~~~i~~-~~e~p~~~e---~~id~~~~~~~~~~~~-i~~~~  268 (269)
                      +.||+++|.+++.+|..+++++.-....       +......+. .|..|..+.   ++|||+ .++++++.. |.+++
T Consensus       148 lkifl~A~~e~Ra~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~pl~~~~dal~IDTs-~l~iee~v~~I~~~i  225 (233)
T 3r20_A          148 VKIFLTASAEERARRRNAQNVANGLPDDYATVLADVQRRDHLDSTRPVSPLRAADDALVVDTS-DMDQAQVIAHLLDLV  225 (233)
T ss_dssp             EEEEEECCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHSCSSCCSCCTTSEEEECT-TSCHHHHHHHHHHHC
T ss_pred             EEEEEECCHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccccccccccCcEEEECC-CCCHHHHHHHHHHHH
Confidence            6689999999999998776643211111       111112222 355555433   999995 899999998 65553

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=98.84  E-value=1.5e-08  Score=81.87  Aligned_cols=138  Identities=15%  Similarity=0.058  Sum_probs=72.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHHHHHHHHHHHHHhCCcceeecc--
Q 024315          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACL--  181 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~l~~~a~~~~~~g~~~iv~~--  181 (269)
                      +|+|+|++||||||+++.|++.+..     .+++.+.+.....        .....+    .....+. .+..++.+.  
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l~~-----~~i~~d~~~~~~~--------~~~~~~----~~~~~l~-~~~~vi~dr~~   64 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKELKY-----PIIKGSSFELAKS--------GNEKLF----EHFNKLA-DEDNVIIDRFV   64 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHHCC-----CEEECCCHHHHTT--------CHHHHH----HHHHHHT-TCCSEEEESCH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC-----eeecCcccccchh--------HHHHHH----HHHHHHH-hCCCeEEeeee
Confidence            6899999999999999999998753     2677765432110        001111    1111111 122222211  


Q ss_pred             -------------CChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCcccc---ccccccccCC---
Q 024315          182 -------------ISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKG---FTGIDDPYEP---  242 (269)
Q Consensus       182 -------------~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~---~~~i~~~~e~---  242 (269)
                                   .......+..++..+..+.+ .|++++|.+.+.+|..++      ......   +..+.+.|+.   
T Consensus        65 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~i~l~~~~e~~~~R~~~r------~r~~~~~~~~~~~~~~~~~~~~  137 (173)
T 3kb2_A           65 YSNLVYAKKFKDYSILTERQLRFIEDKIKAKAK-VVYLHADPSVIKKRLRVR------GDEYIEGKDIDSILELYREVMS  137 (173)
T ss_dssp             HHHHHHTTTBTTCCCCCHHHHHHHHHHHTTTEE-EEEEECCHHHHHHHHHHH------SCSCCCHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHhhHhhHHHHHHHhccCCCCCE-EEEEeCCHHHHHHHHHhc------CCcchhhhHHHHHHHHHHHHHh
Confidence                         01112334444444334433 489999999999987442      111111   1111122221   


Q ss_pred             -CCCCCeEEEcCCCcCHHHHHH-HHhh
Q 024315          243 -PLNCEVGVHVWYRFELAETWR-ITKW  267 (269)
Q Consensus       243 -p~~~e~~id~~~~~~~~~~~~-i~~~  267 (269)
                       ...+.++||++ ..+++++.. |.+.
T Consensus       138 ~~~~~~~~id~~-~~~~~ev~~~I~~~  163 (173)
T 3kb2_A          138 NAGLHTYSWDTG-QWSSDEIAKDIIFL  163 (173)
T ss_dssp             TCSSCEEEEETT-TSCHHHHHHHHHHH
T ss_pred             hcCCCEEEEECC-CCCHHHHHHHHHHH
Confidence             12367899984 467888777 5544

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=98.83  E-value=1.7e-10  Score=94.11  Aligned_cols=37  Identities=32%  Similarity=0.431  Sum_probs=30.8

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~  142 (269)
                      .+.+++|+|+|||||||+++.|++.+.     ..+++++.+.
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~l~-----~~~id~d~~~   39 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQLN-----MEFYDSDQEI   39 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHTT-----CEEEEHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhC-----CCEEeccHHH
Confidence            467899999999999999999999874     2577777653

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=98.82  E-value=7.9e-09  Score=84.24  Aligned_cols=114  Identities=21%  Similarity=0.138  Sum_probs=65.5

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccC-C----CCChhhHHHHHHHHHHHHHHHH---hCC
Q 024315          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD-L----SFKAEDRVENIRRIGEVAKLFA---DAG  174 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~-~----g~~~~~~~~~~~~l~~~a~~~~---~~g  174 (269)
                      .+|+|+|++||||||+++.|+...    .+...++.|.++..+... .    .+..+........+........   ..+
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~~~----~~~~~i~~d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g   78 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIAKN----PGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSV   78 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS----TTEEEECHHHHHHHHTTSCCGGGCCCCHHHHHHHHHHHHHHHHHHHTSCSSC
T ss_pred             eEEEEecCCCCCHHHHHHHHHhhc----CCcEEecHHHHHHHhhCCCccchhhhchhhhhHHHHHHHHHHHHHHhhccCC
Confidence            579999999999999999999821    235678777665433221 1    1332221111122222333333   456


Q ss_pred             cceeeccCChHHHHHHHHHHhCCC--CCccEEEEeCChhHHHhcChhh
Q 024315          175 VICIACLISPYRKDRDACRSMLPE--GDFIEVFMDVPLQVCEARDPKG  220 (269)
Q Consensus       175 ~~~iv~~~~~~~~~r~~ar~ll~~--~~~~~i~ld~p~~~l~~R~~k~  220 (269)
                      ..++++.......+++.++.++..  .++..+++++|.+.|.+|..++
T Consensus        79 ~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R  126 (181)
T 1ly1_A           79 KGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKR  126 (181)
T ss_dssp             CEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTC
T ss_pred             CeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhcc
Confidence            556665443333444444443322  2334589999999999987553

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=98.80  E-value=6.2e-09  Score=96.69  Aligned_cols=39  Identities=28%  Similarity=0.304  Sum_probs=34.6

Q ss_pred             ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315           88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus        88 ~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      ++...+.+++.+.+| +++|+|+||||||||+++|...+.
T Consensus        47 nf~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~   85 (415)
T 4aby_A           47 NLATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLG   85 (415)
T ss_dssp             EETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred             cccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence            456667889999999 999999999999999999987764

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.78  E-value=2.4e-09  Score=93.64  Aligned_cols=27  Identities=44%  Similarity=0.556  Sum_probs=24.8

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      ++|++++|+|+|||||||+++.|++.|
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~L   51 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESL   51 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhc
Confidence            689999999999999999999999554

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=98.76  E-value=7e-09  Score=91.48  Aligned_cols=44  Identities=27%  Similarity=0.302  Sum_probs=38.6

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~  142 (269)
                      +++|++++|+||||||||||+++|.+.+.+..+|.|.++++++.
T Consensus        22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~   65 (261)
T 2eyu_A           22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE   65 (261)
T ss_dssp             GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCC
T ss_pred             hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcce
Confidence            79999999999999999999999999885333789999888764

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=98.76  E-value=4.2e-10  Score=96.15  Aligned_cols=118  Identities=15%  Similarity=0.106  Sum_probs=64.9

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC---cccccCCCCChhhHHHHH-HHHHHHHHHHHh-C
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR---HGLNRDLSFKAEDRVENI-RRIGEVAKLFAD-A  173 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~---~~l~~~~g~~~~~~~~~~-~~l~~~a~~~~~-~  173 (269)
                      +.+|++++|+||||||||||+++|++. . +.+|.|..  .++.   ...+..++|.+|+..+++ .........+.. .
T Consensus        19 i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~-p~~G~I~~--~~~~~~~~~~~~~ig~v~q~~~enl~~~~~~~~~~~~~~~   94 (208)
T 3b85_A           19 IDTNTIVFGLGPAGSGKTYLAMAKAVQ-A-LQSKQVSR--IILTRPAVEAGEKLGFLPGTLNEKIDPYLRPLHDALRDMV   94 (208)
T ss_dssp             HHHCSEEEEECCTTSSTTHHHHHHHHH-H-HHTTSCSE--EEEEECSCCTTCCCCSSCC------CTTTHHHHHHHTTTS
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHhcC-C-CcCCeeee--EEecCCchhhhcceEEecCCHHHHHHHHHHHHHHHHHHhc
Confidence            478999999999999999999999998 4 44555522  1111   123455677777643333 110000000000 0


Q ss_pred             C---cceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          174 G---VICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       174 g---~~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      .   +..+... ..++++| ..+++++.++++  +++|||+..    ..+.+.+.++.
T Consensus        95 ~~~~~~~~l~~-glGq~qrv~lAraL~~~p~l--llLDEPts~----~~~~l~~~l~~  145 (208)
T 3b85_A           95 EPEVIPKLMEA-GIVEVAPLAYMRGRTLNDAF--VILDEAQNT----TPAQMKMFLTR  145 (208)
T ss_dssp             CTTHHHHHHHT-TSEEEEEGGGGTTCCBCSEE--EEECSGGGC----CHHHHHHHHTT
T ss_pred             cHHHHHHHHHh-CCchHHHHHHHHHHhcCCCE--EEEeCCccc----cHHHHHHHHHH
Confidence            0   0000111 1123333 578888888888  999999999    44455555443

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=98.75  E-value=2.5e-09  Score=87.48  Aligned_cols=52  Identities=17%  Similarity=0.131  Sum_probs=43.9

Q ss_pred             eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (269)
Q Consensus        89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~  142 (269)
                      ....+.+++.+++|++++|+||||||||||++.|++.+  +.+|.|.++|.++.
T Consensus        20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l--~~~G~V~~~g~~i~   71 (158)
T 1htw_A           20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI--GHQGNVKSPTYTLV   71 (158)
T ss_dssp             HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT--TCCSCCCCCTTTCE
T ss_pred             HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC--CCCCeEEECCEeee
Confidence            33456678999999999999999999999999999988  45688888886653

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=98.75  E-value=9.2e-09  Score=104.13  Aligned_cols=45  Identities=33%  Similarity=0.406  Sum_probs=36.8

Q ss_pred             eEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHH-HHHhh
Q 024315           82 ILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACA-LSQAL  126 (269)
Q Consensus        82 ~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~-L~~~l  126 (269)
                      +++....+...+++++.+++|++++|+|+||||||||++. |.+.+
T Consensus       503 L~v~~l~~~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l  548 (842)
T 2vf7_A          503 LELNGVTRNNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDAL  548 (842)
T ss_dssp             EEEEEEEETTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHH
T ss_pred             EEEEeeeecccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHH
Confidence            4555444445778899999999999999999999999996 77655

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.73  E-value=9.1e-08  Score=79.75  Aligned_cols=30  Identities=30%  Similarity=0.431  Sum_probs=26.1

Q ss_pred             eecCCCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315           97 LLQQKGCVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus        97 l~~~~g~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      +.+.+|++++|+|+|||||||+++.|++.+
T Consensus         1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             ---CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            356789999999999999999999999987

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=98.71  E-value=7.6e-09  Score=85.21  Aligned_cols=152  Identities=13%  Similarity=0.143  Sum_probs=75.8

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHH-----HHHHHHH-HHHHHHHhCC
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRV-----ENIRRIG-EVAKLFADAG  174 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~-----~~~~~l~-~~a~~~~~~g  174 (269)
                      .+..|+|+|++||||||+++.|+..+..     .+++.|.+.....   +....+..     ..++.+. ++...+....
T Consensus         4 ~~~~i~l~G~~GsGKst~a~~La~~l~~-----~~i~~d~~~~~~~---g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~   75 (185)
T 3trf_A            4 NLTNIYLIGLMGAGKTSVGSQLAKLTKR-----ILYDSDKEIEKRT---GADIAWIFEMEGEAGFRRREREMIEALCKLD   75 (185)
T ss_dssp             -CCEEEEECSTTSSHHHHHHHHHHHHCC-----CEEEHHHHHHHHH---TSCHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCC-----CEEEChHHHHHHc---CCChhhHHHHhCHHHHHHHHHHHHHHHHhcC
Confidence            4678999999999999999999998853     3677766543211   22222111     1111111 1111122212


Q ss_pred             cceeeccC--ChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcC--hhhHHH-HHhcCc-ccccccccc----ccCCCC
Q 024315          175 VICIACLI--SPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARD--PKGLYK-LAREGK-VKGFTGIDD----PYEPPL  244 (269)
Q Consensus       175 ~~~iv~~~--~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~--~k~l~~-~~r~g~-~~~~~~i~~----~~e~p~  244 (269)
                      ..++....  ......++.++..    . ..||+++|.+.+.+|.  .++-.. ...... ...+..+..    .|+.  
T Consensus        76 ~~vi~~gg~~~~~~~~~~~l~~~----~-~vi~L~~~~e~l~~Rl~~~~~~~rp~~~~~~~~~~l~~~~~~r~~~y~~--  148 (185)
T 3trf_A           76 NIILATGGGVVLDEKNRQQISET----G-VVIYLTASIDTQLKRIGQKGEMRRPLFIKNNSKEKLQQLNEIRKPLYQA--  148 (185)
T ss_dssp             SCEEECCTTGGGSHHHHHHHHHH----E-EEEEEECCHHHHHHHHHCCTTCSSCCCCCHHHHHHHHHHHHHHHHHHHH--
T ss_pred             CcEEecCCceecCHHHHHHHHhC----C-cEEEEECCHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHhh--
Confidence            22222111  1122334444432    1 3489999999999887  321100 000000 000111111    1221  


Q ss_pred             CCCeEEEcCCCcCHHHHHH-HHhhc
Q 024315          245 NCEVGVHVWYRFELAETWR-ITKWL  268 (269)
Q Consensus       245 ~~e~~id~~~~~~~~~~~~-i~~~~  268 (269)
                      .++++|||+ ..+++++.. |.+++
T Consensus       149 ~ad~~Idt~-~~~~~e~~~~I~~~l  172 (185)
T 3trf_A          149 MADLVYPTD-DLNPRQLATQILVDI  172 (185)
T ss_dssp             HCSEEEECT-TCCHHHHHHHHHHHS
T ss_pred             cCCEEEECC-CCCHHHHHHHHHHHH
Confidence            168999995 677888877 77665

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=98.71  E-value=2.4e-08  Score=89.89  Aligned_cols=49  Identities=27%  Similarity=0.300  Sum_probs=41.5

Q ss_pred             cCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315           93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (269)
Q Consensus        93 ~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~  142 (269)
                      +..++.+++|++++|+|+|||||||+++.|++.+.+ .+|.|.+.+.+..
T Consensus        91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~-~~g~V~l~g~d~~  139 (302)
T 3b9q_A           91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN-EGTKVLMAAGDTF  139 (302)
T ss_dssp             CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEECCCCS
T ss_pred             cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH-cCCeEEEEeeccc
Confidence            346778899999999999999999999999999864 4688888887653

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.65  E-value=2.6e-08  Score=85.37  Aligned_cols=36  Identities=25%  Similarity=0.427  Sum_probs=22.6

Q ss_pred             ccCcceecCCCeEEEEEcCCCChHHHHHHHHH-Hhhc
Q 024315           92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALS-QALH  127 (269)
Q Consensus        92 ~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~-~~l~  127 (269)
                      .+..|+.+++|++++|+||||||||||++.|+ +.++
T Consensus        17 ~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~   53 (231)
T 3lnc_A           17 QGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN   53 (231)
T ss_dssp             -----CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred             cCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence            45678899999999999999999999999999 8763

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=98.62  E-value=1.7e-08  Score=83.95  Aligned_cols=113  Identities=14%  Similarity=0.139  Sum_probs=63.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhhHHHHHHHHHHHHHH-HHh-CCcce
Q 024315          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDRVENIRRIGEVAKL-FAD-AGVIC  177 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~~~~~~~~l~~~a~~-~~~-~g~~~  177 (269)
                      .++|+||||||||||++.|++.+.      +.++|.+...    .....+++..++.. ....+  .+.. +.. .-...
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~------i~~~g~~~~~~~~~~~~~~ig~~~~~~~-~~~~~--~~~~~~~~~~~~~~   72 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG------KRAIGFWTEEVRDPETKKRTGFRIITTE-GKKKI--FSSKFFTSKKLVGS   72 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG------GGEEEEEEEEEC------CCEEEEEETT-CCEEE--EEETTCCCSSEETT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC------CcCCCEEhhhhccccccceeEEEeecCc-HHHHH--HHhhcCCccccccc
Confidence            578999999999999999999884      2233322110    11222344333210 00000  0000 000 00011


Q ss_pred             eeccCChHHHHH-HHHHH-----hCCCCCccEEEEeC--ChhHHHhcChhhHHHHHhc
Q 024315          178 IACLISPYRKDR-DACRS-----MLPEGDFIEVFMDV--PLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       178 iv~~~~~~~~~r-~~ar~-----ll~~~~~~~i~ld~--p~~~l~~R~~k~l~~~~r~  227 (269)
                      .+...++++++| ..+++     ++.++++  +++||  |++.++....+.+.+.+++
T Consensus        73 ~~~~lSgG~~qr~~la~aa~~~~l~~~p~l--lilDEigp~~~ld~~~~~~l~~~l~~  128 (178)
T 1ye8_A           73 YGVNVQYFEELAIPILERAYREAKKDRRKV--IIIDEIGKMELFSKKFRDLVRQIMHD  128 (178)
T ss_dssp             EEECHHHHHHHHHHHHHHHHHHHHHCTTCE--EEECCCSTTGGGCHHHHHHHHHHHTC
T ss_pred             cccCcCHHHHHHHHHHhhccccccccCCCE--EEEeCCCCcccCCHHHHHHHHHHHhc
Confidence            122345566666 56775     7888888  99999  9999988777777766665

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=98.62  E-value=2.5e-08  Score=80.29  Aligned_cols=108  Identities=19%  Similarity=0.232  Sum_probs=55.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhccCCccEEEEC-CeecCcccccCCCCChhhHHHHHHH---------HHHHH-HHH-H
Q 024315          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILD-GDNCRHGLNRDLSFKAEDRVENIRR---------IGEVA-KLF-A  171 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~-g~~~~~~l~~~~g~~~~~~~~~~~~---------l~~~a-~~~-~  171 (269)
                      +|+|+|++||||||+++.| ..+.   .  ..++ ++.++...... +....+.......         +.... ..+ .
T Consensus         3 ~I~l~G~~GsGKsT~a~~L-~~~g---~--~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   75 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL-KERG---A--KVIVMSDVVRKRYSIE-AKPGERLMDFAKRLREIYGDGVVARLCVEELGT   75 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH-HHTT---C--EEEEHHHHHHHHHHHH-C---CCHHHHHHHHHHHHCTTHHHHHHHHHHCS
T ss_pred             EEEEECCCCCCHHHHHHHH-HHCC---C--cEEEHhHHHHHHHHhc-CCChhHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Confidence            7899999999999999999 5543   1  2333 33333211100 1111111111111         01111 111 1


Q ss_pred             hCCcceeeccCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhh
Q 024315          172 DAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKG  220 (269)
Q Consensus       172 ~~g~~~iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~  220 (269)
                      ..+...+++.. ....++..++..... ++..|++++|.+.+.+|..++
T Consensus        76 ~~~~~vi~dg~-~~~~~~~~l~~~~~~-~~~~i~l~~~~~~~~~R~~~R  122 (179)
T 3lw7_A           76 SNHDLVVFDGV-RSLAEVEEFKRLLGD-SVYIVAVHSPPKIRYKRMIER  122 (179)
T ss_dssp             CCCSCEEEECC-CCHHHHHHHHHHHCS-CEEEEEEECCHHHHHHHHHTC
T ss_pred             cCCCeEEEeCC-CCHHHHHHHHHHhCC-CcEEEEEECCHHHHHHHHHhc
Confidence            23333444433 334555666666653 345589999999999987544

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=98.62  E-value=1.6e-07  Score=80.57  Aligned_cols=59  Identities=19%  Similarity=0.182  Sum_probs=41.5

Q ss_pred             ecCCCeEEEEEcCCCChHHHHHHHHHHhhcc-CCccEEEECCeecCcccccCCCCChhhH
Q 024315           98 LQQKGCVIWITGLSGSGKSTLACALSQALHW-RGKLTYILDGDNCRHGLNRDLSFKAEDR  156 (269)
Q Consensus        98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~-~~~g~i~l~g~~~~~~l~~~~g~~~~~~  156 (269)
                      ..++|++++|+||||||||||++.|.+.+++ ...|.+.+.+.+.+.......+|..+..
T Consensus        12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~   71 (219)
T 1s96_A           12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNH   71 (219)
T ss_dssp             ---CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCH
T ss_pred             cCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCH
Confidence            4589999999999999999999999998753 2356677777655544344456655543

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=98.62  E-value=9.5e-08  Score=97.54  Aligned_cols=42  Identities=26%  Similarity=0.264  Sum_probs=34.3

Q ss_pred             eEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHH
Q 024315           82 ILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALS  123 (269)
Q Consensus        82 ~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~  123 (269)
                      +++........+++++.+++|++++|+|+||||||||++.|.
T Consensus       630 L~v~~l~~~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll  671 (972)
T 2r6f_A          630 LEVVGAREHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL  671 (972)
T ss_dssp             EEEEEECSSSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred             EEEecCcccccccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence            444443344578889999999999999999999999999853

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=98.62  E-value=8.4e-09  Score=93.97  Aligned_cols=90  Identities=11%  Similarity=0.004  Sum_probs=62.5

Q ss_pred             ccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHHHHHHHHHHHHH
Q 024315           92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFA  171 (269)
Q Consensus        92 ~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~l~~~a~~~~  171 (269)
                      .+..++.+++|++++|+|+||||||||+++|.+.++ +.+|.+.+++.+..       .+...  .              
T Consensus       161 l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~-~~~g~i~i~~~~e~-------~~~~~--~--------------  216 (330)
T 2pt7_A          161 ISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP-KEERIISIEDTEEI-------VFKHH--K--------------  216 (330)
T ss_dssp             HHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSC-TTSCEEEEESSCCC-------CCSSC--S--------------
T ss_pred             HhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCc-CCCcEEEECCeecc-------ccccc--h--------------
Confidence            455688899999999999999999999999999884 56899999875421       11100  0              


Q ss_pred             hCCcceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChh
Q 024315          172 DAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQ  211 (269)
Q Consensus       172 ~~g~~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~  211 (269)
                        ....++. . ++++++ ..++++..++++  +++|||..
T Consensus       217 --~~i~~~~-g-gg~~~r~~la~aL~~~p~i--lildE~~~  251 (330)
T 2pt7_A          217 --NYTQLFF-G-GNITSADCLKSCLRMRPDR--IILGELRS  251 (330)
T ss_dssp             --SEEEEEC-B-TTBCHHHHHHHHTTSCCSE--EEECCCCS
T ss_pred             --hEEEEEe-C-CChhHHHHHHHHhhhCCCE--EEEcCCCh
Confidence              0000110 0 233344 577777778888  89999987

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=98.59  E-value=3.9e-08  Score=83.44  Aligned_cols=27  Identities=48%  Similarity=0.586  Sum_probs=24.2

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      .+.+++|+|+|||||||+++.|++.+.
T Consensus         4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g   30 (227)
T 1cke_A            4 IAPVITIDGPSGAGKGTLCKAMAEALQ   30 (227)
T ss_dssp             CSCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            356899999999999999999999873

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=98.59  E-value=1.7e-07  Score=79.33  Aligned_cols=149  Identities=13%  Similarity=0.117  Sum_probs=78.7

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHH---HH----H--------------
Q 024315          102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRV---EN----I--------------  160 (269)
Q Consensus       102 g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~---~~----~--------------  160 (269)
                      ..+|+|.|++||||||+++.|+..|.-+     ++|++-++. .....|++.+...   +.    +              
T Consensus         6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~-----~~D~~~~~~-~a~~~g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~   79 (201)
T 3fdi_A            6 QIIIAIGREFGSGGHLVAKKLAEHYNIP-----LYSKELLDE-VAKDGRYSKEVLERFDEKPMNFAFIPVPAGGTTISLE   79 (201)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHTTCC-----EECHHHHHH-TTCC---------------------------------
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHhCcC-----EECHHHHHH-HHHhcCCCHHHHHHHhhhchhHHHHHhcccccccccc
Confidence            3489999999999999999999998644     677543321 1111222221110   00    0              


Q ss_pred             ----HHHHHHHHHHH--hCCcceeeccCChHHHHHHHHHHhCCC-CCccEEEEeCChhHHHhcChhhH-------HH---
Q 024315          161 ----RRIGEVAKLFA--DAGVICIACLISPYRKDRDACRSMLPE-GDFIEVFMDVPLQVCEARDPKGL-------YK---  223 (269)
Q Consensus       161 ----~~l~~~a~~~~--~~g~~~iv~~~~~~~~~r~~ar~ll~~-~~~~~i~ld~p~~~l~~R~~k~l-------~~---  223 (269)
                          ....++...+.  ..+-.++......         -++.+ +..+.||+++|++.+.+|..++.       .+   
T Consensus        80 ~~~~~~~~~~i~~la~~~~~~~Vi~Gr~g~---------~vl~~~~~~~~V~L~A~~e~r~~R~~~~~~~~~~~~~~~i~  150 (201)
T 3fdi_A           80 QDIAIRQFNFIRKKANEEKESFVIVGRCAE---------EILSDNPNMISAFILGDKDTKTKRVMEREGVDEKTALNMMK  150 (201)
T ss_dssp             CHHHHHHHHHHHHHHHTSCCCEEEESTTHH---------HHTTTCTTEEEEEEEECHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcCCCEEEEECCcc---------hhcCCCCCeEEEEEECCHHHHHHHHHHHhCCCHHHHHHHHH
Confidence                11122222233  3333333322211         12332 24567999999999999875431       00   


Q ss_pred             ---HHhcCccccccccccccCCCCCCCeEEEcCCCcCHHHHHH-HHhhc
Q 024315          224 ---LAREGKVKGFTGIDDPYEPPLNCEVGVHVWYRFELAETWR-ITKWL  268 (269)
Q Consensus       224 ---~~r~g~~~~~~~i~~~~e~p~~~e~~id~~~~~~~~~~~~-i~~~~  268 (269)
                         ..|......+++.+  +..|...+++|||+ .+++++|.. |.+++
T Consensus       151 ~~d~~R~~~y~~~~~~~--~~~~~~~dl~Idt~-~l~~eevv~~I~~~i  196 (201)
T 3fdi_A          151 KMDKMRKVYHNFYCESK--WGDSRTYDICIKIG-KVDVDTATDMIIKYI  196 (201)
T ss_dssp             HHHHHHHHHHHHHCSSC--TTBGGGCSEEEEES-SSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCC--CCCcccCCEEEECC-CCCHHHHHHHHHHHH
Confidence               11111112223333  23355678999995 888999998 66553

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=98.58  E-value=2.3e-07  Score=77.70  Aligned_cols=31  Identities=39%  Similarity=0.403  Sum_probs=27.2

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhccCC
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALHWRG  130 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~  130 (269)
                      ++|.+|+|+|++||||||+++.|+..+...+
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~   38 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNN   38 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence            5688999999999999999999999876443

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=98.56  E-value=3e-08  Score=81.14  Aligned_cols=147  Identities=19%  Similarity=0.195  Sum_probs=74.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhH-----HHHHHHH-HHHHHHHHhCCcce
Q 024315          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR-----VENIRRI-GEVAKLFADAGVIC  177 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~-----~~~~~~l-~~~a~~~~~~g~~~  177 (269)
                      .++|+|++||||||+++.|++.+.     ..+++.+.+....   .+....+.     ....+.. ..+...+.... ..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l~-----~~~~d~d~~~~~~---~g~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~-~~   76 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDLD-----LVFLDSDFLIEQK---FNQKVSEIFEQKRENFFREQEQKMADFFSSCE-KA   76 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHT-----CEEEEHHHHHHHH---HTSCHHHHHHHHCHHHHHHHHHHHHHHHTTCC-SE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcC-----CCEEcccHHHHHH---cCCCHHHHHHHcCHHHHHHHHHHHHHHHHccC-CE
Confidence            589999999999999999999884     3477777654211   12222111     1111111 11111122111 22


Q ss_pred             eeccCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCccccccccccccC---C--CCCCCeEEEc
Q 024315          178 IACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYE---P--PLNCEVGVHV  252 (269)
Q Consensus       178 iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~~i~~~~e---~--p~~~e~~id~  252 (269)
                      ++..+.+...++.     +.+.. ..||+++|.+.+.+|..++.+. .+ ........+...|+   +  +..++++|||
T Consensus        77 vi~~g~~~~~~~~-----l~~~~-~~i~l~~~~e~~~~R~~~r~~~-~r-~~~~~~~~i~~~~~~r~~~y~~~~~~~Idt  148 (175)
T 1via_A           77 CIATGGGFVNVSN-----LEKAG-FCIYLKADFEYLKKRLDKDEIS-KR-PLFYDEIKAKKLYNERLSKYEQKANFILNI  148 (175)
T ss_dssp             EEECCTTGGGSTT-----GGGGC-EEEEEECCHHHHTTCCCGGGTT-TS-CTTCCHHHHHHHHHHHHHHHHHHCSEEEEC
T ss_pred             EEECCCCEehhhH-----HhcCC-EEEEEeCCHHHHHHHHhcccCC-CC-CCcccHHHHHHHHHHHHHHHHhcCCEEEEC
Confidence            2222221111111     22222 3489999999999998655310 01 11110111221111   1  1235799999


Q ss_pred             CCCcCHHHHHH-HHhhc
Q 024315          253 WYRFELAETWR-ITKWL  268 (269)
Q Consensus       253 ~~~~~~~~~~~-i~~~~  268 (269)
                      + ..+++++.. |.++|
T Consensus       149 ~-~~~~eev~~~I~~~l  164 (175)
T 1via_A          149 E-NKNIDELLSEIKKVI  164 (175)
T ss_dssp             T-TCCHHHHHHHHHHHH
T ss_pred             C-CCCHHHHHHHHHHHH
Confidence            4 578888888 76654

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=98.56  E-value=1.4e-07  Score=79.78  Aligned_cols=43  Identities=23%  Similarity=0.256  Sum_probs=34.6

Q ss_pred             ecCCCeEEEEEcCCCChHHHHHHHHHHhhcc-C-----CccEEEECCee
Q 024315           98 LQQKGCVIWITGLSGSGKSTLACALSQALHW-R-----GKLTYILDGDN  140 (269)
Q Consensus        98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~-~-----~~g~i~l~g~~  140 (269)
                      -+++|++++|+||||||||||++.|++.+.. +     +.+.+++++.+
T Consensus        21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~   69 (231)
T 4a74_A           21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN   69 (231)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence            4689999999999999999999999996543 1     34577777654

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=98.55  E-value=1.1e-07  Score=84.30  Aligned_cols=113  Identities=21%  Similarity=0.158  Sum_probs=66.2

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCccccc---CC--CCChhhHHHHH-HHHHHHHHHHH---hC
Q 024315          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNR---DL--SFKAEDRVENI-RRIGEVAKLFA---DA  173 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~---~~--g~~~~~~~~~~-~~l~~~a~~~~---~~  173 (269)
                      .+|+|+|++||||||+++.|+..+    .+..+++.|.++..+..   +.  .+... ..... ..+.+......   ..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~~~----~~~~~i~~D~~r~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~   77 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIAKN----PGFYNINRDDYRQSIMAHEERDEYKYTKK-KEGIVTGMQFDTAKSILYGGDS   77 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS----TTEEEECHHHHHHHHTTSCCCC---CCHH-HHHHHHHHHHHHHHHHTTSCTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhC----CCcEEecccHHHHHhccCCcccccccchh-hhhHHHHHHHHHHHHHHhhccC
Confidence            579999999999999999999854    14567887766543322   11  22221 11111 11222222233   45


Q ss_pred             CcceeeccCChHHHHHHHHHHhCCC--CCccEEEEeCChhHHHhcChhh
Q 024315          174 GVICIACLISPYRKDRDACRSMLPE--GDFIEVFMDVPLQVCEARDPKG  220 (269)
Q Consensus       174 g~~~iv~~~~~~~~~r~~ar~ll~~--~~~~~i~ld~p~~~l~~R~~k~  220 (269)
                      +..++++.......+++.+.+++..  .++..|++++|.+.+.+|..++
T Consensus        78 g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R  126 (301)
T 1ltq_A           78 VKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKR  126 (301)
T ss_dssp             CCEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHC
T ss_pred             CCEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhc
Confidence            5566666554444455555444322  2345589999999999987543

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=98.55  E-value=2.2e-07  Score=82.76  Aligned_cols=120  Identities=14%  Similarity=0.106  Sum_probs=65.5

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCccccc------CCCC-ChhhHHHHHHHH-HHHHHHH
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNR------DLSF-KAEDRVENIRRI-GEVAKLF  170 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~------~~g~-~~~~~~~~~~~l-~~~a~~~  170 (269)
                      ...|.+++|+|+|||||||+++.|+..+.   .+.+.+++|.++.....      ..+. ..+........+ .......
T Consensus        30 ~~~~~livl~G~sGsGKSTla~~L~~~~~---~~~~~Is~D~~R~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~v~~~  106 (287)
T 1gvn_B           30 VESPTAFLLGGQPGSGKTSLRSAIFEETQ---GNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRL  106 (287)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHHHTT---TCCEEECTHHHHTTSTTHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhC---CCeEEEechHhHHhchhhHHHHHHccchhhhhhhHHHHHHHHHHHHHH
Confidence            35688999999999999999999998763   24678898877642211      0000 001111112221 1122222


Q ss_pred             HhCCcceeeccCChHHHHHHHHHHhCCCC--CccEEEEeCChhHHHhcChhhH
Q 024315          171 ADAGVICIACLISPYRKDRDACRSMLPEG--DFIEVFMDVPLQVCEARDPKGL  221 (269)
Q Consensus       171 ~~~g~~~iv~~~~~~~~~r~~ar~ll~~~--~~~~i~ld~p~~~l~~R~~k~l  221 (269)
                      ...|..++++.......++...++.+...  .+..+++++|.+.+..+..+++
T Consensus       107 l~~g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl  159 (287)
T 1gvn_B          107 SDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERY  159 (287)
T ss_dssp             HHHTCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHH
T ss_pred             HhcCCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHH
Confidence            33455555554433333343444443332  2334789999999944333343

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.54  E-value=1.3e-09  Score=102.21  Aligned_cols=128  Identities=13%  Similarity=0.006  Sum_probs=73.3

Q ss_pred             eccCcceecCCCe--------------------EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-------
Q 024315           91 KRDRQQLLQQKGC--------------------VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-------  143 (269)
Q Consensus        91 ~~~r~sl~~~~g~--------------------~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-------  143 (269)
                      ..+.+++.+++|+                    +++|+|+||||||||+++|.+.+. +.+|.+.+++.+...       
T Consensus        38 ~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~-p~~GsI~~~g~~~t~~~~v~q~  116 (413)
T 1tq4_A           38 ILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN-EEEGAAKTGVVEVTMERHPYKH  116 (413)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT-TSTTSCCCCC----CCCEEEEC
T ss_pred             HhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC-ccCceEEECCeecceeEEeccc
Confidence            4566788888999                    999999999999999999999874 556777777654310       


Q ss_pred             cc------ccCCCCChhhHHHHHHHHHHHHHH--HHhCCcceeeccCChHHHHHHHHHHhCC----------CCCccEEE
Q 024315          144 GL------NRDLSFKAEDRVENIRRIGEVAKL--FADAGVICIACLISPYRKDRDACRSMLP----------EGDFIEVF  205 (269)
Q Consensus       144 ~l------~~~~g~~~~~~~~~~~~l~~~a~~--~~~~g~~~iv~~~~~~~~~r~~ar~ll~----------~~~~~~i~  205 (269)
                      ..      ...+++....  .   .+.+....  +.+.........+.+.+++...++++..          ++++  ++
T Consensus       117 ~~~~~ltv~D~~g~~~~~--~---~~~~~L~~~~L~~~~~~~~lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdl--ll  189 (413)
T 1tq4_A          117 PNIPNVVFWDLPGIGSTN--F---PPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDS--DI  189 (413)
T ss_dssp             SSCTTEEEEECCCGGGSS--C---CHHHHHHHTTGGGCSEEEEEESSCCCHHHHHHHHHHHHTTCEEEEEECCHHH--HH
T ss_pred             cccCCeeehHhhcccchH--H---HHHHHHHHcCCCccCCeEEeCCCCccHHHHHHHHHHHhcCCCeEEEEecCcc--cc
Confidence            00      0111221110  0   01111111  1111111121111124555567888776          4455  57


Q ss_pred             EeCChhHHHhcChhhHHHHHh
Q 024315          206 MDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       206 ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      +|||+..++...++.+.+.++
T Consensus       190 LDEPtsgLD~~~~~~l~~~l~  210 (413)
T 1tq4_A          190 TNEADGEPQTFDKEKVLQDIR  210 (413)
T ss_dssp             HHHHTTCCTTCCHHHHHHHHH
T ss_pred             cCcccccCCHHHHHHHHHHHH
Confidence            799998888887776655544

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=98.53  E-value=2.7e-07  Score=76.94  Aligned_cols=30  Identities=37%  Similarity=0.554  Sum_probs=26.5

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhccCC
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALHWRG  130 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~  130 (269)
                      +|.+|+|+|++||||||+++.|+..+...+
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g   32 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIELKR   32 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence            578999999999999999999999886443

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=98.53  E-value=1.7e-07  Score=80.81  Aligned_cols=152  Identities=18%  Similarity=0.156  Sum_probs=81.5

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhH------------------------
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR------------------------  156 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~------------------------  156 (269)
                      +.-+|+|.|++||||||+++.|+..+.-     -++|++.+.. .....+++.+..                        
T Consensus        13 ~~~iI~i~g~~gsGk~~i~~~la~~lg~-----~~~d~~~~~~-~a~~~g~~~~~~~~~~E~~~~~~~~~~~~~~~~~~~   86 (223)
T 3hdt_A           13 KNLIITIEREYGSGGRIVGKKLAEELGI-----HFYDDDILKL-ASEKSAVGEQFFRLADEKAGNNLLYRLGGGRKIDLH   86 (223)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHHHTC-----EEECHHHHHH-HHHCC-------------------------------
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHcCC-----cEEcHHHHHH-HHHHcCCCHHHHHHHHhhccccHHHHHhcccccccc
Confidence            3568999999999999999999998853     2677654331 111111111100                        


Q ss_pred             ------------HHHHHHHHHHHHHHHhCCcceeeccCChHHHHHHHHHHhCCC-CCccEEEEeCChhHHHhcChhh--H
Q 024315          157 ------------VENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPE-GDFIEVFMDVPLQVCEARDPKG--L  221 (269)
Q Consensus       157 ------------~~~~~~l~~~a~~~~~~g~~~iv~~~~~~~~~r~~ar~ll~~-~~~~~i~ld~p~~~l~~R~~k~--l  221 (269)
                                  ...+....++...+...+-.++.....+.     .++ .+.+ +..+.||+++|++.+.+|..++  +
T Consensus        87 ~~~~~~~~~~~~~~~f~~~~~~i~~la~~~~~Vi~Grggg~-----vl~-~~~~~~~~~~VfL~A~~e~r~~Ri~~~~~~  160 (223)
T 3hdt_A           87 SKPSPNDKLTSPENLFKFQSEVMRELAESEPCIFVGRAAGY-----VLD-QDEDIERLIRIFVYTDKVKKVQRVMEVDCI  160 (223)
T ss_dssp             -----------HHHHHHHHHHHHHHHHHHSCEEEESTTHHH-----HHH-HCTTCCEEEEEEEECCHHHHHHHHHHHHTC
T ss_pred             cccccccccccHHHHHHHHHHHHHHHHhCCCEEEEeCCcch-----hcc-cccCCCCeEEEEEECCHHHHHHHHHHhcCC
Confidence                        00011111122222222333333233221     111 1122 2356799999999999987542  0


Q ss_pred             -----H------HHHhcCccccccccccccCCCCCCCeEEEcCCCcCHHHHHH-HHhh
Q 024315          222 -----Y------KLAREGKVKGFTGIDDPYEPPLNCEVGVHVWYRFELAETWR-ITKW  267 (269)
Q Consensus       222 -----~------~~~r~g~~~~~~~i~~~~e~p~~~e~~id~~~~~~~~~~~~-i~~~  267 (269)
                           .      ...|......+++++  +..|...+++|||+ ..++++|+. |.++
T Consensus       161 ~~~~a~~~I~~~d~~R~~~Y~~ytg~~--~~~~~~~dl~IdT~-~l~~eevv~~I~~~  215 (223)
T 3hdt_A          161 DEERAKRRIKKIEKERKEYYKYFTGSE--WHSMKNYDLPINTT-KLTLEETAELIKAY  215 (223)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHSSC--TTCGGGCSEEEECT-TCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHcCCC--CCCcccCeEEEECC-CCCHHHHHHHHHHH
Confidence                 0      011121222234443  56777889999995 888999998 6554

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=98.48  E-value=7.4e-08  Score=83.45  Aligned_cols=41  Identities=20%  Similarity=0.177  Sum_probs=26.7

Q ss_pred             CceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315           87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus        87 ~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      +.....++++|.+++|++++|+|+||||||||++.|++.+.
T Consensus        10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG   50 (245)
T 2jeo_A           10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLG   50 (245)
T ss_dssp             -------------CCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            34567788999999999999999999999999999999873

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=98.47  E-value=8.6e-07  Score=90.53  Aligned_cols=46  Identities=15%  Similarity=0.159  Sum_probs=36.1

Q ss_pred             eccCChHHHHH-HHHHHhCCCC---CccEEEEeCChhHHHhcChhhHHHHHh
Q 024315          179 ACLISPYRKDR-DACRSMLPEG---DFIEVFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       179 v~~~~~~~~~r-~~ar~ll~~~---~~~~i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      ...+|++++|| .++++++.++   ++  +++|||+..++....+.+.+.++
T Consensus       803 ~~~LSGGErQRV~LAraL~~~p~~p~L--LILDEPTsGLD~~~~~~L~~lL~  852 (916)
T 3pih_A          803 ATTLSGGEAQRIKLASELRKRDTGRTL--YILDEPTVGLHFEDVRKLVEVLH  852 (916)
T ss_dssp             STTCCHHHHHHHHHHHHHTSCCCSSEE--EEEESTTTTCCHHHHHHHHHHHH
T ss_pred             ccCCCHHHHHHHHHHHHHhhCCCCCCE--EEEECCCCCCCHHHHHHHHHHHH
Confidence            44567888888 6889988765   46  89999999999988888765544

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=98.47  E-value=4.3e-08  Score=80.65  Aligned_cols=148  Identities=22%  Similarity=0.191  Sum_probs=73.9

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhH-----HHHHHHH-HH-HHHHHHhCCc
Q 024315          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR-----VENIRRI-GE-VAKLFADAGV  175 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~-----~~~~~~l-~~-~a~~~~~~g~  175 (269)
                      .+|+|+|++||||||+++.|+..+..+     +++.|.+.....   +....+.     ...++.. .. +..+......
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~~-----~id~D~~~~~~~---g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   74 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKALGVG-----LLDTDVAIEQRT---GRSIADIFATDGEQEFRRIEEDVVRAALADHDG   74 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHTCC-----EEEHHHHHHHHH---SSCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCS
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCC-----EEeCchHHHHHc---CCCHHHHHHHhChHHHHHHHHHHHHHHHhcCCe
Confidence            368999999999999999999987533     677777643221   2221110     0111111 01 1122222222


Q ss_pred             ceeeccC-C-hHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHH-HHhcCcc-ccccccc----cccCCCCCCC
Q 024315          176 ICIACLI-S-PYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK-LAREGKV-KGFTGID----DPYEPPLNCE  247 (269)
Q Consensus       176 ~~iv~~~-~-~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~-~~r~g~~-~~~~~i~----~~~e~p~~~e  247 (269)
                       ++.... . .....++.++    . . ..|++++|.+.+.+|..++-.. ....... ..+..+.    ..|.  ..++
T Consensus        75 -vi~~g~~~v~~~~~~~~l~----~-~-~vV~L~~~~e~~~~Rl~~r~~r~~~~~~~~~~~i~~~~~~r~~~~~--~~~~  145 (184)
T 2iyv_A           75 -VLSLGGGAVTSPGVRAALA----G-H-TVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRAPLYR--RVAT  145 (184)
T ss_dssp             -EEECCTTGGGSHHHHHHHT----T-S-CEEEEECCHHHHHHHTTCCCCCSSTTSCCHHHHHHHHHHHHHHHHH--HHCS
T ss_pred             -EEecCCcEEcCHHHHHHHc----C-C-eEEEEeCCHHHHHHHHhCCCCCCCccCCCHHHHHHHHHHHHHHHHh--ccCC
Confidence             111111 1 1122333222    2 2 3489999999999997543100 0000000 0011111    1221  2357


Q ss_pred             eEEEcCCCcCHHHHHH-HHhhc
Q 024315          248 VGVHVWYRFELAETWR-ITKWL  268 (269)
Q Consensus       248 ~~id~~~~~~~~~~~~-i~~~~  268 (269)
                      ++|||+ ..+++++.. |.++|
T Consensus       146 ~~Idt~-~~s~ee~~~~I~~~l  166 (184)
T 2iyv_A          146 MRVDTN-RRNPGAVVRHILSRL  166 (184)
T ss_dssp             EEEECS-SSCHHHHHHHHHTTS
T ss_pred             EEEECC-CCCHHHHHHHHHHHH
Confidence            999994 567888887 77765

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=98.47  E-value=7.7e-08  Score=79.23  Aligned_cols=33  Identities=33%  Similarity=0.474  Sum_probs=25.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhccCCccEEEE
Q 024315          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYIL  136 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l  136 (269)
                      +|+|+|++||||||+++.|+..+...+...+..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~   34 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLY   34 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence            689999999999999999999884333333433

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=98.47  E-value=7.4e-08  Score=81.26  Aligned_cols=31  Identities=29%  Similarity=0.366  Sum_probs=26.0

Q ss_pred             eecCCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315           97 LLQQKGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus        97 l~~~~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      +.+++|++++|+||||||||||+++|+++++
T Consensus        15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           15 QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             ----CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            5789999999999999999999999999874

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=98.46  E-value=3.2e-07  Score=75.36  Aligned_cols=27  Identities=26%  Similarity=0.439  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      ++.+|+|+|++||||||+++.|+..+.
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~   28 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVEKYG   28 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            467899999999999999999998774

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=98.46  E-value=6.6e-09  Score=85.41  Aligned_cols=28  Identities=32%  Similarity=0.287  Sum_probs=25.1

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      .++.+|+|+|++||||||+++.|+..+.
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~   36 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELASKSG   36 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence            4677899999999999999999998874

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=98.45  E-value=2.7e-08  Score=80.73  Aligned_cols=147  Identities=16%  Similarity=0.100  Sum_probs=73.1

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhH-----HHHHHHHH-HHHHHHHhCCcc
Q 024315          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR-----VENIRRIG-EVAKLFADAGVI  176 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~-----~~~~~~l~-~~a~~~~~~g~~  176 (269)
                      .+|+|+|++||||||+++.|+..+.     ..+++.|.+....   .+....+.     ...++.+. .+...+.  +..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg-----~~~id~d~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~   72 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARALG-----YEFVDTDIFMQHT---SGMTVADVVAAEGWPGFRRRESEALQAVA--TPN   72 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHT-----CEEEEHHHHHHHH---HCSCHHHHHHHHHHHHHHHHHHHHHHHHC--CSS
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhC-----CcEEcccHHHHHH---hCCCHHHHHHHcCHHHHHHHHHHHHHHhh--cCC
Confidence            3689999999999999999999874     2366666554221   12222111     11111111 1111122  222


Q ss_pred             eeeccCC---hHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcCh--hhH-----HH-HHhcCccccccccccc-cCCCC
Q 024315          177 CIACLIS---PYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDP--KGL-----YK-LAREGKVKGFTGIDDP-YEPPL  244 (269)
Q Consensus       177 ~iv~~~~---~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~--k~l-----~~-~~r~g~~~~~~~i~~~-~e~p~  244 (269)
                      .++..+.   .....+..++.    .. ..|++++|.+.+.+|..  ++.     .. .....++........+ |..  
T Consensus        73 ~vi~~g~~~~~~~~~~~~l~~----~~-~~i~l~~~~e~~~~R~~~~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~--  145 (173)
T 1e6c_A           73 RVVATGGGMVLLEQNRQFMRA----HG-TVVYLFAPAEELALRLQASLQAHQRPTLTGRPIAEEMEAVLREREALYQD--  145 (173)
T ss_dssp             EEEECCTTGGGSHHHHHHHHH----HS-EEEEEECCHHHHHHHHHHHHCSCCCCCTTHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             eEEECCCcEEeCHHHHHHHHc----CC-eEEEEECCHHHHHHHHhhccCCCCCCcCCCCCHHHHHHHHHHHHHHHHHh--
Confidence            2332221   12233443332    12 34899999999998874  220     00 0000000000001111 221  


Q ss_pred             CCCeEEEcCCCcCHHHHHH-HHhhc
Q 024315          245 NCEVGVHVWYRFELAETWR-ITKWL  268 (269)
Q Consensus       245 ~~e~~id~~~~~~~~~~~~-i~~~~  268 (269)
                       ++++||++ ..+++++.. |.++|
T Consensus       146 -~~~~Id~~-~~~~~~~~~~i~~~l  168 (173)
T 1e6c_A          146 -VAHYVVDA-TQPPAAIVCELMQTM  168 (173)
T ss_dssp             -HCSEEEET-TSCHHHHHHHHHHHT
T ss_pred             -CcEEEECC-CCCHHHHHHHHHHHh
Confidence             57999994 567888887 76665

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=98.45  E-value=7.9e-07  Score=76.60  Aligned_cols=30  Identities=27%  Similarity=0.299  Sum_probs=27.4

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHHhhcc
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQALHW  128 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~  128 (269)
                      .++|.+++|.|++||||||+++.|.+.+..
T Consensus        23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~   52 (229)
T 4eaq_A           23 NAMSAFITFEGPEGSGKTTVINEVYHRLVK   52 (229)
T ss_dssp             CCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence            348999999999999999999999999864

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.44  E-value=5.2e-07  Score=81.45  Aligned_cols=33  Identities=27%  Similarity=0.265  Sum_probs=28.4

Q ss_pred             cCcceecCCCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315           93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus        93 ~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      +..++.+.+| +.+|+|+||||||||+.+|.-.+
T Consensus        16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~ll   48 (322)
T 1e69_A           16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVF   48 (322)
T ss_dssp             SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTS
T ss_pred             CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHh
Confidence            4567777888 99999999999999999998554

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=98.44  E-value=3.1e-08  Score=89.33  Aligned_cols=52  Identities=19%  Similarity=0.035  Sum_probs=41.1

Q ss_pred             ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEEC
Q 024315           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD  137 (269)
Q Consensus        81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~  137 (269)
                      ++++.+. ....+.+++.+++|++++|+||||||||||+++|++++    +|.|...
T Consensus       106 ~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~----~G~I~~~  157 (305)
T 2v9p_A          106 NIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL----GGSVLSF  157 (305)
T ss_dssp             TCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH----TCEEECG
T ss_pred             EEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc----CceEEEE
Confidence            4444432 23456789999999999999999999999999999988    5666543

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=98.43  E-value=9.5e-08  Score=80.65  Aligned_cols=44  Identities=32%  Similarity=0.348  Sum_probs=36.6

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHHhhccC--CccEEEECCeecC
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQALHWR--GKLTYILDGDNCR  142 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~--~~g~i~l~g~~~~  142 (269)
                      .++|++++|+|+||||||||++.|++.+.+.  ..+.+.+++..+.
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~   64 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLD   64 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCC
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCC
Confidence            5789999999999999999999999999642  3677777776553

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.43  E-value=8.3e-07  Score=74.93  Aligned_cols=28  Identities=32%  Similarity=0.485  Sum_probs=26.2

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      ++|++++|+||||||||||++.|.+.++
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~   33 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPE   33 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            6899999999999999999999999874

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=98.43  E-value=7e-08  Score=92.12  Aligned_cols=52  Identities=17%  Similarity=0.076  Sum_probs=45.5

Q ss_pred             eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (269)
Q Consensus        89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~  142 (269)
                      +.+.+.+++.+++ ++++|+||||||||||+++|++++. +.+|.|.++|.++.
T Consensus        17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~-p~~G~I~~~g~~~~   68 (483)
T 3euj_A           17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI-PDLTLLNFRNTTEA   68 (483)
T ss_dssp             ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC-CCTTTCCCCCTTSC
T ss_pred             cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC-CCCCEEEECCEEcc
Confidence            4456788999999 9999999999999999999999884 66889999987764

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=98.41  E-value=8.1e-08  Score=92.47  Aligned_cols=56  Identities=13%  Similarity=0.152  Sum_probs=47.6

Q ss_pred             eeCceeeccCcce-ecCCCeEEEEEcCCCChHHHHHHH--HHHhhccCCccEEEECCeec
Q 024315           85 HKNSVDKRDRQQL-LQQKGCVIWITGLSGSGKSTLACA--LSQALHWRGKLTYILDGDNC  141 (269)
Q Consensus        85 ~~~~v~~~~r~sl-~~~~g~~i~l~G~sGsGKSTla~~--L~~~l~~~~~g~i~l~g~~~  141 (269)
                      -...+...+++++ .+++|++++|+|+||||||||++.  +.+.+. +++|.+++++.+.
T Consensus        21 ~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~-~~~g~i~v~g~~~   79 (525)
T 1tf7_A           21 MRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE-FDEPGVFVTFEET   79 (525)
T ss_dssp             ECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSSC
T ss_pred             ccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh-CCCCEEEEEEeCC
Confidence            3445777888999 999999999999999999999999  678774 5678999998763

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=98.41  E-value=9.9e-08  Score=86.24  Aligned_cols=30  Identities=30%  Similarity=0.278  Sum_probs=28.2

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHHhhcc
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQALHW  128 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~  128 (269)
                      +++|++++|+|+||||||||++.|.+.+.+
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~  116 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR  116 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence            789999999999999999999999999854

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=98.40  E-value=2.9e-07  Score=84.65  Aligned_cols=45  Identities=24%  Similarity=0.207  Sum_probs=36.0

Q ss_pred             ecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (269)
Q Consensus        98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~  142 (269)
                      ...+|.+++|+||||||||||+++|.+.+.+...+.+....+++.
T Consensus       119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e  163 (356)
T 3jvv_A          119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIE  163 (356)
T ss_dssp             HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCC
T ss_pred             HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHH
Confidence            567888999999999999999999999986543566665555543

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=98.39  E-value=5.4e-07  Score=75.42  Aligned_cols=32  Identities=34%  Similarity=0.518  Sum_probs=27.5

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHHhhccCC
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRG  130 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~  130 (269)
                      .++|.+|+|+|++||||||+++.|+..+...+
T Consensus         6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~   37 (215)
T 1nn5_A            6 ARRGALIVLEGVDRAGKSTQSRKLVEALCAAG   37 (215)
T ss_dssp             -CCCCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence            46788999999999999999999999876444

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=98.39  E-value=6.3e-07  Score=73.93  Aligned_cols=29  Identities=31%  Similarity=0.418  Sum_probs=25.8

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      ..++.+|+|+|++||||||+++.|+..+.
T Consensus         6 m~~~~~I~l~G~~GsGKsT~~~~La~~l~   34 (196)
T 2c95_A            6 LKKTNIIFVVGGPGSGKGTQCEKIVQKYG   34 (196)
T ss_dssp             HTTSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred             CcCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            35678999999999999999999998774

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=98.39  E-value=1.8e-07  Score=86.15  Aligned_cols=48  Identities=27%  Similarity=0.306  Sum_probs=41.2

Q ss_pred             CcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315           94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (269)
Q Consensus        94 r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~  142 (269)
                      ..++.+++|++++|+|+|||||||+++.|++.+.+ .+|.|.+.+.++.
T Consensus       149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~-~~G~V~l~g~D~~  196 (359)
T 2og2_A          149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN-EGTKVLMAAGDTF  196 (359)
T ss_dssp             SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEECCCCS
T ss_pred             CcceecCCCeEEEEEcCCCChHHHHHHHHHhhccc-cCCEEEEeccccc
Confidence            46778899999999999999999999999999864 4678888887653

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=98.38  E-value=1.2e-06  Score=79.01  Aligned_cols=44  Identities=25%  Similarity=0.377  Sum_probs=34.1

Q ss_pred             ceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCe
Q 024315           96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD  139 (269)
Q Consensus        96 sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~  139 (269)
                      ++...+|++++|+|+|||||||++..|++.+...+..+.+++.|
T Consensus        98 ~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D  141 (306)
T 1vma_A           98 NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAAD  141 (306)
T ss_dssp             CCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             cccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccc
Confidence            44567899999999999999999999999986544334444433

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=98.38  E-value=1.2e-06  Score=84.27  Aligned_cols=115  Identities=12%  Similarity=0.012  Sum_probs=68.1

Q ss_pred             ceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHHHHHHHHHHHHHhCCc
Q 024315           96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGV  175 (269)
Q Consensus        96 sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~l~~~a~~~~~~g~  175 (269)
                      +..+.+|++++|+|+||||||||++.+++.+...|...+++...+...           .......++......+...+.
T Consensus       275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~-----------~l~~~~~~~g~~~~~~~~~g~  343 (525)
T 1tf7_A          275 GGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRA-----------QLLRNAYSWGMDFEEMERQNL  343 (525)
T ss_dssp             TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHH-----------HHHHHHHTTSCCHHHHHHTTS
T ss_pred             CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHH-----------HHHHHHHHcCCCHHHHHhCCC
Confidence            447899999999999999999999999998865443345554432211           000000000000001112333


Q ss_pred             ceee----ccCChHHHHHH-HHHHhCCCCCccEEEEeCChhHHHhc-----ChhhHHHH
Q 024315          176 ICIA----CLISPYRKDRD-ACRSMLPEGDFIEVFMDVPLQVCEAR-----DPKGLYKL  224 (269)
Q Consensus       176 ~~iv----~~~~~~~~~r~-~ar~ll~~~~~~~i~ld~p~~~l~~R-----~~k~l~~~  224 (269)
                      ..+.    ...++.++++. .++.+..++++  +++| |+..++..     ..+.+++.
T Consensus       344 ~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~l--lilD-p~~~Ld~~~~~~~~~~~i~~l  399 (525)
T 1tf7_A          344 LKIVCAYPESAGLEDHLQIIKSEINDFKPAR--IAID-SLSALARGVSNNAFRQFVIGV  399 (525)
T ss_dssp             EEECCCCGGGSCHHHHHHHHHHHHHTTCCSE--EEEE-CHHHHTSSSCHHHHHHHHHHH
T ss_pred             EEEEEeccccCCHHHHHHHHHHHHHhhCCCE--EEEc-ChHHHHhhCChHHHHHHHHHH
Confidence            3332    22455666654 56666677888  8999 99999987     55554443

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=98.37  E-value=8.7e-07  Score=73.88  Aligned_cols=28  Identities=29%  Similarity=0.412  Sum_probs=24.6

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      .++.+|+|+|++||||||+++.|+..+.
T Consensus        13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g   40 (203)
T 1ukz_A           13 DQVSVIFVLGGPGAGKGTQCEKLVKDYS   40 (203)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            4567899999999999999999998763

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=98.37  E-value=1.4e-07  Score=76.55  Aligned_cols=36  Identities=39%  Similarity=0.438  Sum_probs=28.7

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315          102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (269)
Q Consensus       102 g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~  142 (269)
                      -++++|+|++||||||+++.|+..+.-+     +++.|.+.
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~~lg~~-----~id~D~~~   42 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGLALKLE-----VLDTDMII   42 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHHHHTCC-----EEEHHHHH
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHhCCC-----EEEChHHH
Confidence            3589999999999999999999987533     56666543

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=98.35  E-value=1.2e-06  Score=73.38  Aligned_cols=40  Identities=33%  Similarity=0.421  Sum_probs=32.0

Q ss_pred             ecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (269)
Q Consensus        98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~  141 (269)
                      .+++|.+++|+|+|||||||+++.|++.+.    +..+++.|+.
T Consensus        17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~----~~~~i~~D~~   56 (207)
T 2qt1_A           17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP----NCSVISQDDF   56 (207)
T ss_dssp             CSCCCEEEEEEESTTSSHHHHHHHHHTTST----TEEEEEGGGG
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHhcC----CcEEEeCCcc
Confidence            567899999999999999999999999762    2445555554

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=98.35  E-value=9.6e-07  Score=73.67  Aligned_cols=28  Identities=29%  Similarity=0.396  Sum_probs=25.2

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      ..+.+|+|+|++||||||+++.|+..+.
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~~l~   45 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAEKLG   45 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4567899999999999999999999874

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=98.35  E-value=1.7e-06  Score=70.91  Aligned_cols=36  Identities=28%  Similarity=0.400  Sum_probs=29.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCe
Q 024315          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD  139 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~  139 (269)
                      +|+|+|++||||||+++.|+..+...+....+++.+
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~   38 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYG   38 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECC
Confidence            689999999999999999999886554446666643

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=98.34  E-value=6.9e-07  Score=86.09  Aligned_cols=119  Identities=17%  Similarity=0.267  Sum_probs=70.1

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCC---C-CChh--hHHHHHHH-----HHHHH
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDL---S-FKAE--DRVENIRR-----IGEVA  167 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~---g-~~~~--~~~~~~~~-----l~~~a  167 (269)
                      ...+.+|+++|++||||||+++.|++.+...+.....|+.|+++..+....   . |.+.  +.......     +....
T Consensus        32 ~~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~~~~f~~~~~~~~~~re~~~~~~l~~~~  111 (520)
T 2axn_A           32 TNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSYNFFRPDNEEAMKVRKQCALAALRDVK  111 (520)
T ss_dssp             -CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCccccccCcccHHHHHHHHHHHHHHHHHHH
Confidence            345678999999999999999999998865555566788777764332211   1 1111  11111111     11111


Q ss_pred             HHH-HhCCcceeeccCChHHHHHHHHHHhCCCC--CccEEEEeCC-hhHHHhcC
Q 024315          168 KLF-ADAGVICIACLISPYRKDRDACRSMLPEG--DFIEVFMDVP-LQVCEARD  217 (269)
Q Consensus       168 ~~~-~~~g~~~iv~~~~~~~~~r~~ar~ll~~~--~~~~i~ld~p-~~~l~~R~  217 (269)
                      ..+ ...|..++++........|+.+++++.+.  .++.|.+.+| .+.+.+|.
T Consensus       112 ~~L~~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~ri  165 (520)
T 2axn_A          112 SYLAKEGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNI  165 (520)
T ss_dssp             HHHHHSCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHH
T ss_pred             HHHHhcCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHHH
Confidence            222 24677778777777777777666665532  3445677777 44444444

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=98.33  E-value=1.2e-06  Score=76.44  Aligned_cols=34  Identities=26%  Similarity=0.402  Sum_probs=27.2

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~  141 (269)
                      .+++|+|+|||||||+++.|++.+..     .+++.|.+
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~~~-----~~i~~D~~   35 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQETGW-----PVVALDRV   35 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHCC-----CEEECCSG
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcCCC-----eEEeccHH
Confidence            37899999999999999999998742     25666553

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=98.33  E-value=1.2e-07  Score=90.13  Aligned_cols=45  Identities=20%  Similarity=0.225  Sum_probs=39.9

Q ss_pred             CcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCcc-E-EEECCe
Q 024315           94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKL-T-YILDGD  139 (269)
Q Consensus        94 r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g-~-i~l~g~  139 (269)
                      +.++.+++|++++|+|+||||||||+++|++++. +.+| . ++++++
T Consensus       130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~-p~~G~~pI~vdg~  176 (460)
T 2npi_A          130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL-KFNAYQPLYINLD  176 (460)
T ss_dssp             HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH-HHHCCCCEEEECC
T ss_pred             cCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc-ccCCceeEEEcCC
Confidence            5788999999999999999999999999999884 4577 7 899885

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=98.32  E-value=1.5e-06  Score=80.00  Aligned_cols=45  Identities=13%  Similarity=0.126  Sum_probs=35.0

Q ss_pred             cCChHHHHH-HHHHHhC------CCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          181 LISPYRKDR-DACRSML------PEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       181 ~~~~~~~~r-~~ar~ll------~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      .+++++++| ..+++++      .++++  +++|||+..++....+.+.+.++.
T Consensus       279 ~LSgGe~qr~~la~al~~~~~~~~~p~~--lllDEpt~~LD~~~~~~~~~~l~~  330 (365)
T 3qf7_A          279 GLSGGERALISISLAMSLAEVASGRLDA--FFIDEGFSSLDTENKEKIASVLKE  330 (365)
T ss_dssp             GSCHHHHHHHHHHHHHHHHHHTTTTCCE--EEEESCCTTSCHHHHHHHHHHHHG
T ss_pred             hCCHHHHHHHHHHHHHHhhhcccCCCCE--EEEeCCCccCCHHHHHHHHHHHHH
Confidence            467777777 5667776      67888  999999999999988887766553

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=98.31  E-value=2.2e-07  Score=87.69  Aligned_cols=57  Identities=21%  Similarity=0.138  Sum_probs=47.3

Q ss_pred             ceEEeeC-ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCe
Q 024315           81 NILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD  139 (269)
Q Consensus        81 ~~~~~~~-~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~  139 (269)
                      ++++.+. .+.+.+.. +.+.+|++++|+|+||||||||++.|++.+ .+..|.+.+.|.
T Consensus       136 ~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~-~~~~G~i~~~G~  193 (438)
T 2dpy_A          136 PIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYT-RADVIVVGLIGE  193 (438)
T ss_dssp             CCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHS-CCSEEEEEEESC
T ss_pred             ccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhccc-CCCeEEEEEece
Confidence            4444443 45566777 999999999999999999999999999987 466899999987

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=98.30  E-value=1.9e-07  Score=85.98  Aligned_cols=46  Identities=28%  Similarity=0.237  Sum_probs=41.2

Q ss_pred             cCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCe
Q 024315           93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD  139 (269)
Q Consensus        93 ~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~  139 (269)
                      +..++.+++|++++|+|+||||||||+++|.+.++ +.+|.|.+++.
T Consensus       166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~-~~~g~I~ie~~  211 (361)
T 2gza_A          166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP-FDQRLITIEDV  211 (361)
T ss_dssp             HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC-TTSCEEEEESS
T ss_pred             HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC-CCceEEEECCc
Confidence            56788999999999999999999999999999884 56899999864

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.30  E-value=5.9e-07  Score=85.85  Aligned_cols=48  Identities=19%  Similarity=0.292  Sum_probs=40.0

Q ss_pred             cCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315           93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (269)
Q Consensus        93 ~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~  141 (269)
                      ...++.+++|++++|+|+||||||||++.|++++.. .+|.|.+.+.+.
T Consensus       284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~-~~G~V~l~g~D~  331 (503)
T 2yhs_A          284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQ-QGKSVMLAAGDT  331 (503)
T ss_dssp             CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEECCCT
T ss_pred             CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhh-cCCeEEEecCcc
Confidence            456788999999999999999999999999999864 467777764443

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=98.28  E-value=2.2e-06  Score=68.98  Aligned_cols=145  Identities=21%  Similarity=0.222  Sum_probs=71.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhH-----HHHHHHH-HHHHHHHHhCCcce
Q 024315          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR-----VENIRRI-GEVAKLFADAGVIC  177 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~-----~~~~~~l-~~~a~~~~~~g~~~  177 (269)
                      .|+|+|++||||||+++.|+..+..+     +++.|.+.....   +....+.     ...++.+ ......+...+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l~~~-----~i~~d~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~V   73 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSLNIP-----FYDVDEEVQKRE---GLSIPQIFEKKGEAYFRKLEFEVLKDLSEKENVV   73 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHHTCC-----EEEHHHHHHHHH---TSCHHHHHHHSCHHHHHHHHHHHHHHHTTSSSEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCC-----EEECcHHHHHHc---CCCHHHHHHHhChHHHHHHHHHHHHHHhccCCeE
Confidence            58999999999999999999987432     566655532111   1111110     0111111 11111222223333


Q ss_pred             eeccCC---hHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCccccccccccccC-----CCCCCCeE
Q 024315          178 IACLIS---PYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYE-----PPLNCEVG  249 (269)
Q Consensus       178 iv~~~~---~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~~i~~~~e-----~p~~~e~~  249 (269)
                      +. .+.   .....++.++    ..+ ..|++++|.+.+.+|..++-   .|.........+...|+     .+. ++++
T Consensus        74 i~-~g~~~~~~~~~~~~l~----~~~-~~i~l~~~~e~~~~R~~~r~---~r~~~~~~~~~i~~~~~~~~~~~~~-~~~~  143 (168)
T 2pt5_A           74 IS-TGGGLGANEEALNFMK----SRG-TTVFIDIPFEVFLERCKDSK---ERPLLKRPLDEIKNLFEERRKIYSK-ADIK  143 (168)
T ss_dssp             EE-CCHHHHTCHHHHHHHH----TTS-EEEEEECCHHHHHHHCBCTT---CCBGGGSCGGGTHHHHHHHHHHHTT-SSEE
T ss_pred             EE-CCCCEeCCHHHHHHHH----cCC-EEEEEECCHHHHHHHHhCCC---CCCCCcchHHHHHHHHHHHHHHHHh-CCEE
Confidence            32 211   1122333332    223 34899999999999986531   01000000111221111     122 6888


Q ss_pred             EEcCCCcCHHHHHH-HHhhc
Q 024315          250 VHVWYRFELAETWR-ITKWL  268 (269)
Q Consensus       250 id~~~~~~~~~~~~-i~~~~  268 (269)
                      | ++ ..+++++.. |.+++
T Consensus       144 i-~~-~~~~~~~~~~i~~~l  161 (168)
T 2pt5_A          144 V-KG-EKPPEEVVKEILLSL  161 (168)
T ss_dssp             E-EC-SSCHHHHHHHHHHHH
T ss_pred             E-CC-CCCHHHHHHHHHHHH
Confidence            8 64 577888877 66553

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=98.28  E-value=3.7e-07  Score=83.71  Aligned_cols=58  Identities=28%  Similarity=0.130  Sum_probs=47.4

Q ss_pred             ceEEeeC-ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee
Q 024315           81 NILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (269)
Q Consensus        81 ~~~~~~~-~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~  140 (269)
                      +++..+. .+.+.+.. +.+.+|++++|+|+||||||||++.|++.+. +..|.+.+.|.+
T Consensus        50 ~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~-~~~g~i~~~G~~  108 (347)
T 2obl_A           50 VIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS-ADIIVLALIGER  108 (347)
T ss_dssp             CCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC-CSEEEEEEESCC
T ss_pred             ccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC-CCEEEEEEeccc
Confidence            4444443 56677888 9999999999999999999999999999884 567888887754

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=98.27  E-value=6e-07  Score=75.62  Aligned_cols=50  Identities=18%  Similarity=0.163  Sum_probs=36.5

Q ss_pred             eeeccCcce-ecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECC
Q 024315           89 VDKRDRQQL-LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG  138 (269)
Q Consensus        89 v~~~~r~sl-~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g  138 (269)
                      +...++... -+++|++++|+|+||||||||++.|++.+...+...++++.
T Consensus         9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~   59 (235)
T 2w0m_A            9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT   59 (235)
T ss_dssp             CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred             chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence            334445444 56899999999999999999999999877544444445443

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=98.26  E-value=5.2e-07  Score=81.23  Aligned_cols=41  Identities=22%  Similarity=0.328  Sum_probs=36.0

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~  142 (269)
                      +|++++|+|||||||||+++.|++.+. +.+|.+.+.+.++.
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~-~~~g~V~l~g~D~~  141 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ-NLGKKVMFCAGDTF  141 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHH-TTTCCEEEECCCCS
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHH-hcCCEEEEEeecCC
Confidence            799999999999999999999999985 45788888887764

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=98.25  E-value=3.8e-07  Score=84.25  Aligned_cols=45  Identities=27%  Similarity=0.285  Sum_probs=37.3

Q ss_pred             ecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (269)
Q Consensus        98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~  142 (269)
                      .+++|++++|+|||||||||++++|.+.+.+..+|.|.+.++++.
T Consensus       132 ~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e  176 (372)
T 2ewv_A          132 CHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE  176 (372)
T ss_dssp             TTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC
T ss_pred             hhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh
Confidence            478999999999999999999999999986433678876666553

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.23  E-value=9.6e-07  Score=71.09  Aligned_cols=42  Identities=29%  Similarity=0.319  Sum_probs=34.5

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~  142 (269)
                      +|+.++|+|+||||||||++++.+.+...|...+++++.++.
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~   76 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMP   76 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhh
Confidence            899999999999999999999999886433337788776553

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=98.23  E-value=3.7e-06  Score=69.36  Aligned_cols=111  Identities=17%  Similarity=0.076  Sum_probs=58.6

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC-ccc--------------ccCCCCChhhHHHHHHHHH
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR-HGL--------------NRDLSFKAEDRVENIRRIG  164 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~-~~l--------------~~~~g~~~~~~~~~~~~l~  164 (269)
                      ..+.+|+|+|++||||||+++.|+..+.     ..+++.+++. ...              ..+.....+....   .+.
T Consensus        10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~-----~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~---~~~   81 (199)
T 2bwj_A           10 RKCKIIFIIGGPGSGKGTQCEKLVEKYG-----FTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLE---LLK   81 (199)
T ss_dssp             HHSCEEEEEECTTSSHHHHHHHHHHHHT-----CEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHH---HHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHhC-----CeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHHHH---HHH
Confidence            4577999999999999999999999874     2355544331 111              0000011111111   111


Q ss_pred             HHHHHHHhCCcceeeccCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChh
Q 024315          165 EVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPK  219 (269)
Q Consensus       165 ~~a~~~~~~g~~~iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k  219 (269)
                      +........+..++++.......++..+...+..+++ .|++++|.+.+.+|..+
T Consensus        82 ~~i~~~~~~~~~vi~dg~~~~~~~~~~l~~~~~~~~~-~i~l~~~~~~~~~R~~~  135 (199)
T 2bwj_A           82 EAMVASLGDTRGFLIDGYPREVKQGEEFGRRIGDPQL-VICMDCSADTMTNRLLQ  135 (199)
T ss_dssp             HHHHHHTTSCSCEEEETCCSSHHHHHHHHHHTCCCSE-EEEEECCHHHHHHHHHH
T ss_pred             HHHhcccccCccEEEeCCCCCHHHHHHHHHhcCCCCE-EEEEECCHHHHHHHHHc
Confidence            1111111234444554222222334444444444444 48999999999888643

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.23  E-value=9.6e-07  Score=80.30  Aligned_cols=44  Identities=25%  Similarity=0.351  Sum_probs=37.4

Q ss_pred             ecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (269)
Q Consensus        98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~  142 (269)
                      ..++|++++|+|||||||||+++.|++.+.+ .+|.+.+.+.++.
T Consensus       125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~-~~g~V~l~g~D~~  168 (328)
T 3e70_C          125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKN-HGFSVVIAASDTF  168 (328)
T ss_dssp             SSCSSEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEECCS
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHHh-cCCEEEEEeeccc
Confidence            3478999999999999999999999998854 4678888877764

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=98.22  E-value=6.3e-07  Score=75.19  Aligned_cols=29  Identities=48%  Similarity=0.516  Sum_probs=25.8

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      .++|++++|+|+||||||||++.|++.+.
T Consensus         3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~   31 (211)
T 3asz_A            3 APKPFVIGIAGGTASGKTTLAQALARTLG   31 (211)
T ss_dssp             --CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            57899999999999999999999999875

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=98.22  E-value=1.5e-06  Score=72.91  Aligned_cols=40  Identities=28%  Similarity=0.268  Sum_probs=33.5

Q ss_pred             ecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee
Q 024315           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (269)
Q Consensus        98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~  140 (269)
                      -+++|++++|+|+||||||||++.|++   ..+.+.++++.+.
T Consensus        16 gi~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~   55 (220)
T 2cvh_A           16 GFAPGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEG   55 (220)
T ss_dssp             SBCTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSC
T ss_pred             CCcCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCC
Confidence            468999999999999999999999998   3456777877653

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=98.22  E-value=1.7e-06  Score=72.00  Aligned_cols=34  Identities=32%  Similarity=0.303  Sum_probs=28.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~  142 (269)
                      +++|+|++||||||+++.|++.+.-     .+++.+.+.
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg~-----~~~d~d~~~   37 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALGV-----PYLSSGLLY   37 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTC-----CEEEHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCC-----ceeccchHH
Confidence            8999999999999999999998752     266666554

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=98.21  E-value=2.2e-06  Score=70.93  Aligned_cols=24  Identities=42%  Similarity=0.558  Sum_probs=22.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhc
Q 024315          104 VIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      +|+|+|++||||||+++.|++.+.
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~   25 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLG   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred             EEEEECCCccCHHHHHHHHHHhcC
Confidence            689999999999999999999874

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.20  E-value=8.3e-07  Score=73.15  Aligned_cols=28  Identities=14%  Similarity=0.208  Sum_probs=25.6

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      .+|++++|+||||||||||++.|.+.++
T Consensus         3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            3 HMRKTLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            4689999999999999999999999774

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=98.19  E-value=9.6e-07  Score=79.29  Aligned_cols=42  Identities=31%  Similarity=0.211  Sum_probs=35.0

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhcc-CCccEEEE---CCeec
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALHW-RGKLTYIL---DGDNC  141 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~-~~~g~i~l---~g~~~  141 (269)
                      .+|++++|+|+||||||||++.|++.+.. +.+|.+.+   |+...
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~  123 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLH  123 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccC
Confidence            88999999999999999999999998852 45677777   66543

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.17  E-value=2.1e-07  Score=84.92  Aligned_cols=52  Identities=25%  Similarity=0.128  Sum_probs=43.4

Q ss_pred             eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (269)
Q Consensus        89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~  141 (269)
                      ....++.++.+++|++++|+|+||||||||++.|.+.+.+ ..|.+.+.+.+.
T Consensus        42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~-~~g~v~i~~~d~   93 (337)
T 2qm8_A           42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTA-AGHKVAVLAVDP   93 (337)
T ss_dssp             HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEEEECG
T ss_pred             HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhh-CCCEEEEEEEcC
Confidence            3455777899999999999999999999999999998854 457777777665

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=98.17  E-value=1.1e-06  Score=72.12  Aligned_cols=36  Identities=31%  Similarity=0.368  Sum_probs=28.5

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~  140 (269)
                      .+|.+++|+|++||||||+++.|+..+.     ...++.++
T Consensus         2 ~~g~~I~l~G~~GsGKST~~~~La~~l~-----~~~i~~d~   37 (186)
T 3cm0_A            2 DVGQAVIFLGPPGAGKGTQASRLAQELG-----FKKLSTGD   37 (186)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHHHHHT-----CEEECHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC-----CeEecHHH
Confidence            4688999999999999999999998773     23566443

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=98.16  E-value=2.6e-06  Score=72.45  Aligned_cols=42  Identities=17%  Similarity=0.240  Sum_probs=34.8

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHHh--hcc----CCccEEEECCee
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQA--LHW----RGKLTYILDGDN  140 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~~--l~~----~~~g~i~l~g~~  140 (269)
                      +++|+++.|+|+||||||||++.|++.  +++    .+.+.+++++..
T Consensus        21 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~   68 (243)
T 1n0w_A           21 IETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG   68 (243)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred             CcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence            579999999999999999999999994  322    256788888764

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=98.14  E-value=7.2e-07  Score=73.67  Aligned_cols=40  Identities=28%  Similarity=0.250  Sum_probs=30.5

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhhccCC--ccEEEECCeecC
Q 024315          103 CVIWITGLSGSGKSTLACALSQALHWRG--KLTYILDGDNCR  142 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l~~~~--~g~i~l~g~~~~  142 (269)
                      ++++|+|+||||||||++.|.+.+.+.+  .|.|.+++.++.
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~   44 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDF   44 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccc
Confidence            5799999999999999999999996544  789999988754

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.14  E-value=9.4e-07  Score=74.16  Aligned_cols=28  Identities=36%  Similarity=0.335  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      ++|++++|+||||||||||++.|.+.++
T Consensus         2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            4789999999999999999999999874

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.12  E-value=1.2e-06  Score=77.53  Aligned_cols=37  Identities=30%  Similarity=0.273  Sum_probs=22.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~  141 (269)
                      .++|+|+||||||||++.|.+.+. +.+|.+.++|.++
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~-~~~G~i~~~g~~i   40 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQV-SRKASSWNREEKI   40 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC-------------C
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC-CCCCccccCCccc
Confidence            589999999999999999999884 5678888888655

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=98.11  E-value=3.8e-06  Score=71.15  Aligned_cols=27  Identities=22%  Similarity=0.284  Sum_probs=24.2

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      .+.+|+|+|++||||||+++.|+..+.
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l~   30 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKYQ   30 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            456899999999999999999999874

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=98.09  E-value=7.4e-06  Score=70.19  Aligned_cols=159  Identities=17%  Similarity=0.125  Sum_probs=78.7

Q ss_pred             eecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECC-eecCcccccCC-------------CCChhhHHHHHHH
Q 024315           97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG-DNCRHGLNRDL-------------SFKAEDRVENIRR  162 (269)
Q Consensus        97 l~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g-~~~~~~l~~~~-------------g~~~~~~~~~~~~  162 (269)
                      -..+++.+|+|+||+||||+|.++.|+..+.     ...++. +-+|..+..+-             .+.+.+..  ...
T Consensus        24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g-----~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~--~~l   96 (217)
T 3umf_A           24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKFH-----FNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVV--LAL   96 (217)
T ss_dssp             CCTTSCEEEEEECCTTCCHHHHHHHHHHHHC-----CEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHH--HHH
T ss_pred             hhccCCcEEEEECCCCCCHHHHHHHHHHHHC-----CceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHH--HHH
Confidence            3457889999999999999999999999884     224443 33443222110             01111110  011


Q ss_pred             HHHHHHHHHhCCcceeeccCCh-HHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcC--------ccccc
Q 024315          163 IGEVAKLFADAGVICIACLISP-YRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREG--------KVKGF  233 (269)
Q Consensus       163 l~~~a~~~~~~g~~~iv~~~~~-~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g--------~~~~~  233 (269)
                      +.+............+.+ +.| ...+.+.+...+..+.++ +++++|.+++.+|...+.....|..        ++..|
T Consensus        97 v~~~l~~~~~~~~g~ilD-GfPRt~~Qa~~l~~~~~~~~~v-i~l~v~~e~~~~Rl~~R~~~~~R~DD~~e~i~~Rl~~Y  174 (217)
T 3umf_A           97 LKEAMIKLVDKNCHFLID-GYPRELDQGIKFEKEVCPCLCV-INFDVSEEVMRKRLLKRAETSNRVDDNEETIVKRFRTF  174 (217)
T ss_dssp             HHHHHHHHTTTCSEEEEE-TBCSSHHHHHHHHHHTCCCSEE-EEEECCHHHHHHHHSCC------CHHHHHHHHHHHHHH
T ss_pred             HHHHHhhccccccCcccc-cCCCcHHHHHHHHHhCCccCEE-EeccCCHHHHHHHHhcccccCCCCCCCHHHHHHHHHHH
Confidence            111111111122222332 233 233344444555555443 8999999999998765532111111        11111


Q ss_pred             c----ccccccCCCCCCCeEEEcCCCcCHHHHHH-HHhh
Q 024315          234 T----GIDDPYEPPLNCEVGVHVWYRFELAETWR-ITKW  267 (269)
Q Consensus       234 ~----~i~~~~e~p~~~e~~id~~~~~~~~~~~~-i~~~  267 (269)
                      .    .+-++|+.-. .-..||.  ..++++++. |.+.
T Consensus       175 ~~~t~pl~~~Y~~~~-~l~~Idg--~~~~eeV~~~I~~~  210 (217)
T 3umf_A          175 NELTKPVIEHYKQQN-KVITIDA--SGTVDAIFDKVNHE  210 (217)
T ss_dssp             HHHTHHHHHHHHTTT-CEEEEET--TSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcC-CEEEEEC--CCCHHHHHHHHHHH
Confidence            1    2224454321 2246676  467888887 6554

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=98.09  E-value=8.4e-06  Score=71.66  Aligned_cols=29  Identities=31%  Similarity=0.350  Sum_probs=26.7

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      +++|+++.|+|+||||||||++.+++.+.
T Consensus        27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~   55 (279)
T 1nlf_A           27 MVAGTVGALVSPGGAGKSMLALQLAAQIA   55 (279)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            57999999999999999999999998764

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=98.09  E-value=7.9e-06  Score=66.79  Aligned_cols=27  Identities=30%  Similarity=0.476  Sum_probs=24.0

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      .+.+|+|+|++||||||+++.|+..+.
T Consensus         5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~   31 (194)
T 1qf9_A            5 KPNVVFVLGGPGSGKGTQCANIVRDFG   31 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            356899999999999999999998774

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=98.08  E-value=7.3e-07  Score=74.79  Aligned_cols=37  Identities=30%  Similarity=0.365  Sum_probs=31.4

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315          102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (269)
Q Consensus       102 g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~  141 (269)
                      |++++|+|+||||||||++.|++.+.  .+| +.++|...
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~~--~~G-i~~~g~~~   37 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVLK--SSG-VPVDGFYT   37 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHHH--HTT-CCCEEEEC
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhcc--cCC-EEEcCEec
Confidence            67899999999999999999999986  356 77777554

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=98.08  E-value=2e-05  Score=70.35  Aligned_cols=45  Identities=27%  Similarity=0.329  Sum_probs=34.5

Q ss_pred             CcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315           94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (269)
Q Consensus        94 r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~  141 (269)
                      ..++.  +|++++++|+||+||||++..|++.+...+ +.+.+.+.+.
T Consensus        92 ~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~-~~v~l~~~d~  136 (295)
T 1ls1_A           92 LPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKG-RRPLLVAADT  136 (295)
T ss_dssp             CCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTT-CCEEEEECCS
T ss_pred             eeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcC-CeEEEecCCc
Confidence            34555  899999999999999999999999986544 4445444444

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=98.08  E-value=1.3e-06  Score=77.32  Aligned_cols=51  Identities=25%  Similarity=0.165  Sum_probs=40.8

Q ss_pred             eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccC-CccEEEECCe
Q 024315           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR-GKLTYILDGD  139 (269)
Q Consensus        89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~-~~g~i~l~g~  139 (269)
                      +...++.++.+++|++++|+|+||||||||++.|++.+... |...+++++.
T Consensus        22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e   73 (296)
T 1cr0_A           22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE   73 (296)
T ss_dssp             CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred             HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc
Confidence            44567788889999999999999999999999999988543 3235566553

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.08  E-value=2.7e-06  Score=71.32  Aligned_cols=44  Identities=39%  Similarity=0.405  Sum_probs=33.5

Q ss_pred             ecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (269)
Q Consensus        98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~  141 (269)
                      ..++|.+++|+|+|||||||+++.|.+.+...+...+.++.|..
T Consensus        18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~   61 (201)
T 1rz3_A           18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDH   61 (201)
T ss_dssp             CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred             ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcc
Confidence            45789999999999999999999999988544333444444443

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=98.06  E-value=2.3e-06  Score=80.32  Aligned_cols=43  Identities=30%  Similarity=0.318  Sum_probs=37.0

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~  142 (269)
                      .++|.+++|+||||||||||+++|.+.+. +.+|.|.+.++++.
T Consensus       164 ~~~ggii~I~GpnGSGKTTlL~allg~l~-~~~g~I~~~ed~ie  206 (418)
T 1p9r_A          164 KRPHGIILVTGPTGSGKSTTLYAGLQELN-SSERNILTVEDPIE  206 (418)
T ss_dssp             TSSSEEEEEECSTTSCHHHHHHHHHHHHC-CTTSCEEEEESSCC
T ss_pred             HhcCCeEEEECCCCCCHHHHHHHHHhhcC-CCCCEEEEecccch
Confidence            47899999999999999999999999985 44778888887763

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=98.05  E-value=5.3e-06  Score=73.28  Aligned_cols=46  Identities=22%  Similarity=0.254  Sum_probs=37.5

Q ss_pred             ccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315           92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (269)
Q Consensus        92 ~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~  142 (269)
                      .++.++..++|  ++|+||||||||||+++|++.+.   .+.+.+++.++.
T Consensus        36 l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~---~~~i~i~g~~l~   81 (274)
T 2x8a_A           36 FKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG---LNFISVKGPELL   81 (274)
T ss_dssp             HHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT---CEEEEEETTTTC
T ss_pred             HHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC---CCEEEEEcHHHH
Confidence            34556777888  89999999999999999999874   357888887664

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=98.02  E-value=9.7e-06  Score=68.00  Aligned_cols=37  Identities=30%  Similarity=0.374  Sum_probs=29.6

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~  141 (269)
                      +...+|+|+|.+||||||+++.|+..+.     ..+++.|.+
T Consensus        10 ~~~~iIgltG~~GSGKSTva~~L~~~lg-----~~vid~D~~   46 (192)
T 2grj_A           10 HHHMVIGVTGKIGTGKSTVCEILKNKYG-----AHVVNVDRI   46 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHC-----CEEEEHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHhcC-----CEEEECcHH
Confidence            3456899999999999999999998753     346776665

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=98.01  E-value=1.5e-05  Score=65.00  Aligned_cols=28  Identities=29%  Similarity=0.358  Sum_probs=24.6

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhcc
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALHW  128 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~  128 (269)
                      +|.+|+|+|++||||||+++.|+..+..
T Consensus         2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~   29 (192)
T 1kht_A            2 KNKVVVVTGVPGVGSTTSSQLAMDNLRK   29 (192)
T ss_dssp             -CCEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            3678999999999999999999998853

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.98  E-value=8e-06  Score=70.65  Aligned_cols=28  Identities=25%  Similarity=0.272  Sum_probs=25.3

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      .++..|+|+|++||||||+++.|+..+.
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g   54 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKKSHC   54 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            5788999999999999999999998773

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=97.96  E-value=3.4e-07  Score=79.14  Aligned_cols=44  Identities=23%  Similarity=0.183  Sum_probs=31.2

Q ss_pred             ceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315           96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (269)
Q Consensus        96 sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~  141 (269)
                      ++.+.+ ++++|+||||||||||+++|++.+. +.+|.|.++|.++
T Consensus        22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~-~~~G~i~~~g~~~   65 (227)
T 1qhl_A           22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALI-PDLTLLHFRNTTE   65 (227)
T ss_dssp             EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHS-CCTTTC-------
T ss_pred             EEEEcC-cEEEEECCCCCCHHHHHHHHhcccc-cCCCeEEECCEEc
Confidence            455555 7889999999999999999999985 5578888888766

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=97.96  E-value=1.5e-06  Score=88.85  Aligned_cols=36  Identities=22%  Similarity=0.224  Sum_probs=31.0

Q ss_pred             eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315           91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus        91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      .+.++++.+++|++++|+|||||||||+++.+....
T Consensus       662 V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~  697 (918)
T 3thx_B          662 VPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALIT  697 (918)
T ss_dssp             CCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHH
T ss_pred             ecccccccCCCCeEEEEECCCCCchHHHHHHHHHHH
Confidence            345668889999999999999999999999987643

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.95  E-value=5.8e-06  Score=69.57  Aligned_cols=24  Identities=25%  Similarity=0.398  Sum_probs=21.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhc
Q 024315          104 VIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      .|+|+|++||||||+++.|+..+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~   25 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKYG   25 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            478999999999999999988764

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=97.95  E-value=7.8e-06  Score=74.75  Aligned_cols=46  Identities=22%  Similarity=0.196  Sum_probs=36.6

Q ss_pred             ceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc-CC----ccE-EEECCeec
Q 024315           96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHW-RG----KLT-YILDGDNC  141 (269)
Q Consensus        96 sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~-~~----~g~-i~l~g~~~  141 (269)
                      ...+++|+++.|+|+||||||||++.|++.+.. +.    .|. +++++.+.
T Consensus       125 ~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~  176 (349)
T 1pzn_A          125 GGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT  176 (349)
T ss_dssp             TSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC
T ss_pred             cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC
Confidence            567899999999999999999999999998721 11    244 88887643

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=97.95  E-value=2.6e-06  Score=81.95  Aligned_cols=46  Identities=15%  Similarity=0.076  Sum_probs=39.5

Q ss_pred             CcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee
Q 024315           94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (269)
Q Consensus        94 r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~  140 (269)
                      ..++.+++|+.++|+|+|||||||++++|.+.+ ++..|.+.+++..
T Consensus       252 ~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i-~~~~giitied~~  297 (511)
T 2oap_1          252 YLWLAIEHKFSAIVVGETASGKTTTLNAIMMFI-PPDAKVVSIEDTR  297 (511)
T ss_dssp             HHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGS-CTTCCEEEEESSC
T ss_pred             HHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhC-CCCCCEEEEcCcc
Confidence            345777899999999999999999999999988 4668888887754

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.94  E-value=1.3e-05  Score=67.75  Aligned_cols=28  Identities=29%  Similarity=0.437  Sum_probs=24.7

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      ++|..|+|+|++||||||+++.|+..+.
T Consensus         2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~   29 (220)
T 1aky_A            2 SESIRMVLIGPPGAGKGTQAPNLQERFH   29 (220)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            3567899999999999999999999874

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=97.94  E-value=3.1e-06  Score=85.06  Aligned_cols=31  Identities=23%  Similarity=0.192  Sum_probs=26.9

Q ss_pred             CcceecCCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315           94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus        94 r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      +.++.   |++++|+|||||||||+++.|++...
T Consensus       571 disl~---g~i~~I~GpNGsGKSTlLr~iagl~~  601 (765)
T 1ewq_A          571 DLEMA---HELVLITGPNMAGKSTFLRQTALIAL  601 (765)
T ss_dssp             EEEES---SCEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred             eccCC---CcEEEEECCCCCChHHHHHHHHhhhh
Confidence            34454   99999999999999999999999763

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=97.94  E-value=8.3e-06  Score=66.63  Aligned_cols=34  Identities=32%  Similarity=0.383  Sum_probs=30.3

Q ss_pred             cCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315           93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus        93 ~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      +..++.+.+| +.+|+|+|||||||++++|...+.
T Consensus        18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence            5677888888 899999999999999999998775

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.93  E-value=4.6e-06  Score=76.42  Aligned_cols=35  Identities=23%  Similarity=0.173  Sum_probs=31.8

Q ss_pred             cCcceecCC--CeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315           93 DRQQLLQQK--GCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus        93 ~r~sl~~~~--g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      +.+++.+.+  |+.++|+|+||||||||++.|++.+.
T Consensus       159 ~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~  195 (365)
T 1lw7_A          159 KFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN  195 (365)
T ss_dssp             GGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             hhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            346788889  99999999999999999999999885

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.93  E-value=3.5e-06  Score=68.97  Aligned_cols=32  Identities=28%  Similarity=0.362  Sum_probs=28.9

Q ss_pred             ceecCCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315           96 QLLQQKGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus        96 sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      ++.+.+|+.++|+||||+|||||+++|++.+.
T Consensus        32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~   63 (180)
T 3ec2_A           32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY   63 (180)
T ss_dssp             SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred             hccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            45667899999999999999999999999885

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=97.92  E-value=3.3e-06  Score=72.29  Aligned_cols=42  Identities=21%  Similarity=0.172  Sum_probs=33.2

Q ss_pred             cceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315           95 QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (269)
Q Consensus        95 ~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~  141 (269)
                      .+...++|++++|.|+|||||||+++.|.+.     .|.+.+.+.+.
T Consensus        13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~-----~g~v~~~~~~~   54 (230)
T 2vp4_A           13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY-----KNDICLLTEPV   54 (230)
T ss_dssp             CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG-----TTTEEEECCTH
T ss_pred             ccCCCCCceEEEEECCCCCCHHHHHHHHHhc-----cCCeEEEecCH
Confidence            3445689999999999999999999999886     34566666543

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.92  E-value=2.8e-06  Score=76.02  Aligned_cols=45  Identities=29%  Similarity=0.278  Sum_probs=30.2

Q ss_pred             eecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEE---CCeecC
Q 024315           97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL---DGDNCR  142 (269)
Q Consensus        97 l~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l---~g~~~~  142 (269)
                      +....|++++|+|+||||||||+++|.+.+. +..|.+.+   +|.++.
T Consensus       164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~-~~~G~i~~~~~~g~~~t  211 (301)
T 1u0l_A          164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLK-LRVSEVSEKLQRGRHTT  211 (301)
T ss_dssp             HHHHSSSEEEEECSTTSSHHHHHHHHSTTCC-CC-------------CC
T ss_pred             HHHhcCCeEEEECCCCCcHHHHHHHhccccc-ccccceecccCCCCCce
Confidence            4566899999999999999999999999874 56888888   776654

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=97.91  E-value=2.9e-05  Score=65.30  Aligned_cols=26  Identities=31%  Similarity=0.394  Sum_probs=23.2

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          102 GCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       102 g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      +.+++|+|++||||||+++.|++.+.
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~g   28 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASELS   28 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            45799999999999999999998763

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=97.91  E-value=9.2e-06  Score=83.21  Aligned_cols=32  Identities=25%  Similarity=0.167  Sum_probs=28.6

Q ss_pred             ccCcceecCCCeEEEEEcCCCChHHHHHHHHH
Q 024315           92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALS  123 (269)
Q Consensus        92 ~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~  123 (269)
                      +.+.++.+.+|++++|+|||||||||+++.++
T Consensus       652 ~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ia  683 (934)
T 3thx_A          652 PNDVYFEKDKQMFHIITGPNMGGKSTYIRQTG  683 (934)
T ss_dssp             CEEEEEETTTBCEEEEECCTTSSHHHHHHHHH
T ss_pred             cccceeecCCCeEEEEECCCCCCHHHHHHHHH
Confidence            34568888999999999999999999999993

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.91  E-value=2e-06  Score=80.85  Aligned_cols=40  Identities=28%  Similarity=0.245  Sum_probs=33.3

Q ss_pred             eCceeeccCcceecCCCeE--EEEEcCCCChHHHHHHHHHHhh
Q 024315           86 KNSVDKRDRQQLLQQKGCV--IWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus        86 ~~~v~~~~r~sl~~~~g~~--i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      ++... .+++++.+++|++  ++|+|+||||||||+++|.+..
T Consensus        25 y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~   66 (427)
T 2qag_B           25 FDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK   66 (427)
T ss_dssp             CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred             ECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence            33444 7788999999999  9999999999999999999974

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.91  E-value=1.1e-05  Score=67.76  Aligned_cols=24  Identities=33%  Similarity=0.461  Sum_probs=21.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhc
Q 024315          104 VIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      .|+|+|++||||||+++.|+..+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~   25 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKYE   25 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            478999999999999999988774

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.90  E-value=6.3e-06  Score=69.63  Aligned_cols=35  Identities=29%  Similarity=0.325  Sum_probs=26.9

Q ss_pred             cCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315           93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus        93 ~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      .|.++...+|++++|+||||||||||++.|.+.++
T Consensus        10 ~~~~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           10 GRENLYFQGRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             ------CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             ccccCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            34566667999999999999999999999999764

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=97.87  E-value=2.9e-05  Score=66.00  Aligned_cols=24  Identities=33%  Similarity=0.386  Sum_probs=21.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhc
Q 024315          104 VIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      +|+|+|++||||||+++.|+..+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~lg   25 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKYS   25 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            588999999999999999998773

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=97.87  E-value=6.4e-05  Score=63.97  Aligned_cols=37  Identities=30%  Similarity=0.335  Sum_probs=30.1

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEE
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL  136 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l  136 (269)
                      .+|.+|+|.|++||||||+++.|...+...+..++..
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~   40 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT   40 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence            4689999999999999999999999987655444444

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.84  E-value=1.5e-05  Score=67.68  Aligned_cols=28  Identities=25%  Similarity=0.361  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      .++.+|+|+|++||||||+++.|+..+.
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~   32 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITTHFE   32 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            3567899999999999999999998774

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=97.84  E-value=1.6e-05  Score=71.84  Aligned_cols=48  Identities=19%  Similarity=0.275  Sum_probs=38.2

Q ss_pred             cCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee
Q 024315           93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (269)
Q Consensus        93 ~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~  140 (269)
                      ...++..++|++++++|+||+||||++..|++.+...+..+.+++.|.
T Consensus        96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~  143 (320)
T 1zu4_A           96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT  143 (320)
T ss_dssp             CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            346677889999999999999999999999999875554455555543

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.80  E-value=7.4e-06  Score=73.39  Aligned_cols=44  Identities=20%  Similarity=0.204  Sum_probs=32.0

Q ss_pred             eecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEE---CCeecC
Q 024315           97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL---DGDNCR  142 (269)
Q Consensus        97 l~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l---~g~~~~  142 (269)
                      +....|++++|+|+||||||||+++|. .+ .+..|.|.+   +|.+..
T Consensus       160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~-~~~~G~i~~~~~~G~~~t  206 (302)
T 2yv5_A          160 VDYLEGFICILAGPSGVGKSSILSRLT-GE-ELRTQEVSEKTERGRHTT  206 (302)
T ss_dssp             HHHTTTCEEEEECSTTSSHHHHHHHHH-SC-CCCCSCC---------CC
T ss_pred             HhhccCcEEEEECCCCCCHHHHHHHHH-Hh-hCcccccccccCCCCCce
Confidence            445679999999999999999999999 66 456788888   776553

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=97.79  E-value=3.5e-05  Score=66.38  Aligned_cols=31  Identities=29%  Similarity=0.400  Sum_probs=24.0

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHHhhccC
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQALHWR  129 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~  129 (269)
                      ..+|.+|+|.|++||||||+++.|...+...
T Consensus        22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~   52 (227)
T 3v9p_A           22 MARGKFITFEGIDGAGKTTHLQWFCDRLQER   52 (227)
T ss_dssp             -CCCCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence            3579999999999999999999999988543

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=97.78  E-value=4.9e-06  Score=81.59  Aligned_cols=37  Identities=30%  Similarity=0.083  Sum_probs=28.0

Q ss_pred             EEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315          105 IWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (269)
Q Consensus       105 i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~  141 (269)
                      ++|+|+||||||||+++|.|.+.+.++|.+.++|.++
T Consensus        48 iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i   84 (608)
T 3szr_A           48 IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVL   84 (608)
T ss_dssp             EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEE
T ss_pred             EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEE
Confidence            8999999999999999999987544789999999875

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=97.78  E-value=0.00011  Score=66.97  Aligned_cols=37  Identities=24%  Similarity=0.451  Sum_probs=29.4

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~  141 (269)
                      .++.+++|+||+|||||||+..|++.+.     ..+++.|..
T Consensus        38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~-----~eiIs~Ds~   74 (339)
T 3a8t_A           38 RKEKLLVLMGATGTGKSRLSIDLAAHFP-----LEVINSDKM   74 (339)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHTTSC-----EEEEECCSS
T ss_pred             cCCceEEEECCCCCCHHHHHHHHHHHCC-----CcEEccccc
Confidence            4567999999999999999999999874     235555543

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.78  E-value=8.1e-06  Score=75.04  Aligned_cols=38  Identities=26%  Similarity=0.092  Sum_probs=28.5

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEEC
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD  137 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~  137 (269)
                      .+|++++|+|+||+|||||++.|.+.+..+..|.|.+.
T Consensus       213 ~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~  250 (358)
T 2rcn_A          213 LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNV  250 (358)
T ss_dssp             HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----
T ss_pred             cCCCEEEEECCCCccHHHHHHHHhccccccccCCcccc
Confidence            47999999999999999999999998741556777665

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.78  E-value=1.3e-05  Score=68.98  Aligned_cols=26  Identities=35%  Similarity=0.365  Sum_probs=23.6

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      ++++++|+|+|||||||+++.|+..+
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~l   51 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNF   51 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999999999554

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=97.76  E-value=7.9e-05  Score=62.88  Aligned_cols=27  Identities=26%  Similarity=0.319  Sum_probs=24.1

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      ++..|+|+|++||||||+++.|+..+.
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~~l~   30 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKKEYG   30 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            456899999999999999999999874

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.76  E-value=3.9e-06  Score=75.62  Aligned_cols=44  Identities=25%  Similarity=0.225  Sum_probs=26.3

Q ss_pred             eecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEE---CCeec
Q 024315           97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL---DGDNC  141 (269)
Q Consensus        97 l~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l---~g~~~  141 (269)
                      +.+.+|++++|+|+||+|||||++.|.+.+. +..|.+.+   +|...
T Consensus       168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~-~~~G~I~~~~~~G~~t  214 (307)
T 1t9h_A          168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG-LRTNEISEHLGRGKHT  214 (307)
T ss_dssp             GGGGTTSEEEEEESHHHHHHHHHHHHCC--------------------
T ss_pred             HhhcCCCEEEEECCCCCCHHHHHHHhccccc-ccccceeeecCCCccc
Confidence            5677899999999999999999999999774 45677776   55443

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.76  E-value=2.1e-05  Score=67.83  Aligned_cols=45  Identities=22%  Similarity=0.267  Sum_probs=36.1

Q ss_pred             cCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315           93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (269)
Q Consensus        93 ~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~  142 (269)
                      .+.++.+++|  ++|+||||||||||+++|++.+.   .+.+.+++.++.
T Consensus        42 ~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~---~~~i~~~~~~~~   86 (254)
T 1ixz_A           42 HEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDFV   86 (254)
T ss_dssp             HHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT---CCEEEEEHHHHH
T ss_pred             HHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC---CCEEEeeHHHHH
Confidence            4456677778  88999999999999999999874   567888776553

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=97.75  E-value=2.3e-05  Score=73.07  Aligned_cols=43  Identities=19%  Similarity=0.200  Sum_probs=33.0

Q ss_pred             ecCCCeEEEEEcCCCChHHHHHHHHH--Hhhcc----CCccEEEECCee
Q 024315           98 LQQKGCVIWITGLSGSGKSTLACALS--QALHW----RGKLTYILDGDN  140 (269)
Q Consensus        98 ~~~~g~~i~l~G~sGsGKSTla~~L~--~~l~~----~~~g~i~l~g~~  140 (269)
                      -+++|+++.|+|+||||||||++.|+  ..++.    .+.+++++++..
T Consensus       174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~  222 (400)
T 3lda_A          174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG  222 (400)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred             CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence            36899999999999999999999665  33321    235688888765

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.73  E-value=4.3e-05  Score=72.39  Aligned_cols=117  Identities=18%  Similarity=0.278  Sum_probs=61.8

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccC-C---CCCh--hh----HHHHH-HHHHHHHH
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD-L---SFKA--ED----RVENI-RRIGEVAK  168 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~-~---g~~~--~~----~~~~~-~~l~~~a~  168 (269)
                      ..+.+|+++|.+||||||+++.|++.+......+..++.+.++..+... .   -+..  ++    +..+. ..+.....
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~  116 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK  116 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            4567899999999999999999999886554455566555444322111 0   0111  11    11111 11111122


Q ss_pred             HHH-hCCcceeeccCChHHHHHHHHHHhCCCCCccEEEEe--CC-hhHHHhc
Q 024315          169 LFA-DAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMD--VP-LQVCEAR  216 (269)
Q Consensus       169 ~~~-~~g~~~iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld--~p-~~~l~~R  216 (269)
                      .+. ..|...+++........|+.+.+.+.+..+..++++  ++ .+.+..|
T Consensus       117 ~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l~~~~~~~~~i~~r  168 (469)
T 1bif_A          117 FLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAAN  168 (469)
T ss_dssp             HHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHH
T ss_pred             HHHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEEEECCCHHHHHHH
Confidence            232 446567777766666666666555543222224554  35 4454444

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.71  E-value=1.6e-05  Score=66.54  Aligned_cols=29  Identities=24%  Similarity=0.237  Sum_probs=26.3

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      ..+|.+++|+|+|||||||+++.|...++
T Consensus         9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A            9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence            46889999999999999999999998773

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=97.71  E-value=2.9e-05  Score=68.09  Aligned_cols=45  Identities=22%  Similarity=0.267  Sum_probs=36.2

Q ss_pred             cCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315           93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (269)
Q Consensus        93 ~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~  142 (269)
                      .+.++.+++|  ++|+||||||||||+++|++.+.   .+.+.+++.++.
T Consensus        66 ~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~---~~~i~~~~~~~~  110 (278)
T 1iy2_A           66 HEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDFV  110 (278)
T ss_dssp             HHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT---CCEEEEEHHHHH
T ss_pred             HHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC---CCEEEecHHHHH
Confidence            4456777778  88999999999999999999874   567888776553

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=97.69  E-value=5.3e-05  Score=64.70  Aligned_cols=28  Identities=32%  Similarity=0.419  Sum_probs=24.7

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      ..+..|+|+|++||||||+++.|+..+.
T Consensus        14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~   41 (233)
T 1ak2_A           14 PKGVRAVLLGPPGAGKGTQAPKLAKNFC   41 (233)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3456899999999999999999999874

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.66  E-value=2.7e-05  Score=64.07  Aligned_cols=43  Identities=30%  Similarity=0.362  Sum_probs=32.1

Q ss_pred             cceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315           95 QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (269)
Q Consensus        95 ~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~  141 (269)
                      .++...++..++|+|++||||||+++.|+..+.    |..+++.|++
T Consensus         3 ~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~l~----g~~~id~d~~   45 (184)
T 1y63_A            3 GSMEQPKGINILITGTPGTGKTSMAEMIAAELD----GFQHLEVGKL   45 (184)
T ss_dssp             ---CCCSSCEEEEECSTTSSHHHHHHHHHHHST----TEEEEEHHHH
T ss_pred             cCcCCCCCCEEEEECCCCCCHHHHHHHHHHhcC----CCEEeeHHHH
Confidence            356667889999999999999999999999731    2446666554

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=97.64  E-value=1.3e-05  Score=72.29  Aligned_cols=41  Identities=24%  Similarity=0.196  Sum_probs=32.9

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHhhc-------cCCccEEEECCeecC
Q 024315          102 GCVIWITGLSGSGKSTLACALSQALH-------WRGKLTYILDGDNCR  142 (269)
Q Consensus       102 g~~i~l~G~sGsGKSTla~~L~~~l~-------~~~~g~i~l~g~~~~  142 (269)
                      =++++|+|+||||||||++.|++..+       .+..|.+.+||..+.
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~   51 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIG   51 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEEC
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHh
Confidence            36899999999999999999999752       234677888887664

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.63  E-value=4.5e-05  Score=69.05  Aligned_cols=27  Identities=33%  Similarity=0.318  Sum_probs=24.4

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      .+-+++|+|+|||||||+++.|.+.+.
T Consensus        91 ~p~iigI~GpsGSGKSTl~~~L~~ll~  117 (321)
T 3tqc_A           91 VPYIIGIAGSVAVGKSTTSRVLKALLS  117 (321)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            345999999999999999999999885

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=97.63  E-value=3.5e-05  Score=65.38  Aligned_cols=43  Identities=14%  Similarity=0.103  Sum_probs=34.4

Q ss_pred             ecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee
Q 024315           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (269)
Q Consensus        98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~  140 (269)
                      -+++|+++.|+|+|||||||++..++..+...+.++++++.+.
T Consensus        19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~   61 (247)
T 2dr3_A           19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE   61 (247)
T ss_dssp             SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence            4589999999999999999998877765545566778887653

>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}

Probab=97.62  E-value=3.1e-05  Score=65.59  Aligned_cols=48  Identities=6%  Similarity=0.025  Sum_probs=43.3

Q ss_pred             CCcccCCCcceeeeeeccccc--Cccccccccceeeccccccccccchhhhcccccccccccc
Q 024315           13 RPAICSPSLAEVDFRTSVKMS--GFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQN   73 (269)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~f~~idr~~~~~~~~~~~~~~~~~gagmi~~   73 (269)
                      |..|.+||+|.|+|.+.+|++  +|.+++.+|+|+++|+  +.           |+|+||+..
T Consensus       149 ~~~l~~gd~a~v~l~~~~pi~~e~~~~~~~~Grfilrd~--~~-----------Tva~G~V~~  198 (204)
T 3e1y_E          149 PRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDE--GK-----------TIAIGKVLK  198 (204)
T ss_dssp             CSCCCTTCEEEEEEEESSCCCCCCTTSSGGGTEEEEECS--SS-----------CCEEEEEEE
T ss_pred             CcCcCCCCEEEEEEEECCeEEEEEcccCcCCCCEEEEEC--Cc-----------EEEEEEEEE
Confidence            456999999999999999999  9999999999999999  43           999999864

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.62  E-value=4.3e-05  Score=68.32  Aligned_cols=42  Identities=21%  Similarity=0.234  Sum_probs=34.7

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhcc-CCccEEEECCeec
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALHW-RGKLTYILDGDNC  141 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~-~~~g~i~l~g~~~  141 (269)
                      .+|++++|+|+||+||||++..|++.+.. .|..+.+++.|..
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~  145 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY  145 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc
Confidence            47899999999999999999999999863 4555667776654

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.60  E-value=2.1e-05  Score=65.53  Aligned_cols=33  Identities=33%  Similarity=0.490  Sum_probs=26.7

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~  141 (269)
                      .+++|+|+|||||||+++.|++ +.     ..++++|.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~-lg-----~~~id~d~~   35 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD-LG-----VPLVDADVV   35 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT-TT-----CCEEEHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH-CC-----CcccchHHH
Confidence            3789999999999999999988 42     346777665

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=97.60  E-value=0.00027  Score=61.15  Aligned_cols=33  Identities=33%  Similarity=0.385  Sum_probs=28.1

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhccCCcc
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKL  132 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g  132 (269)
                      .+|.+|+|.|++||||||+++.|...+...+..
T Consensus        25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~   57 (236)
T 3lv8_A           25 MNAKFIVIEGLEGAGKSTAIQVVVETLQQNGID   57 (236)
T ss_dssp             -CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence            368999999999999999999999998755533

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=97.59  E-value=0.00019  Score=60.17  Aligned_cols=24  Identities=25%  Similarity=0.216  Sum_probs=21.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhc
Q 024315          104 VIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      .|+|+|++||||||+++.|+..+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~g   25 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKYG   25 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            478999999999999999999774

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.56  E-value=0.00055  Score=64.21  Aligned_cols=46  Identities=26%  Similarity=0.379  Sum_probs=35.9

Q ss_pred             CcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315           94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (269)
Q Consensus        94 r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~  141 (269)
                      ..++.  +|++++++|++||||||++..|++.+...+..+.+++.|..
T Consensus        92 ~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~  137 (425)
T 2ffh_A           92 LPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ  137 (425)
T ss_dssp             CCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSS
T ss_pred             cccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecccc
Confidence            34555  89999999999999999999999999755555556665533

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=97.55  E-value=1.7e-05  Score=65.81  Aligned_cols=30  Identities=27%  Similarity=0.329  Sum_probs=27.6

Q ss_pred             eecCCCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315           97 LLQQKGCVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus        97 l~~~~g~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      +.+.+|..++|+|+||||||||++.|.+..
T Consensus        21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~   50 (210)
T 1pui_A           21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQK   50 (210)
T ss_dssp             SSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            888999999999999999999999998865

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.53  E-value=3e-05  Score=71.78  Aligned_cols=35  Identities=29%  Similarity=0.142  Sum_probs=31.6

Q ss_pred             ccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315           92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus        92 ~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      .++.++.+++|++++|+||||||||||++.|++.+
T Consensus       159 l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~  193 (377)
T 1svm_A          159 LKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC  193 (377)
T ss_dssp             HHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            44557899999999999999999999999999976

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=97.52  E-value=0.00014  Score=62.73  Aligned_cols=26  Identities=23%  Similarity=0.333  Sum_probs=22.8

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          102 GCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       102 g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      .-.++|+|++||||||+++.|+..+.
T Consensus         8 ~~~~~~~G~pGsGKsT~a~~L~~~~g   33 (230)
T 3gmt_A            8 HMRLILLGAPGAGKGTQANFIKEKFG   33 (230)
T ss_dssp             -CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             ccceeeECCCCCCHHHHHHHHHHHhC
Confidence            34689999999999999999999885

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.52  E-value=5.6e-05  Score=67.40  Aligned_cols=30  Identities=27%  Similarity=0.305  Sum_probs=27.1

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHHhhcc
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQALHW  128 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~  128 (269)
                      ..++.+++|+|++|||||||++.|.+.+..
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~   57 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME   57 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            357899999999999999999999999864

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=97.49  E-value=7.4e-05  Score=64.61  Aligned_cols=44  Identities=27%  Similarity=0.309  Sum_probs=33.8

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhccC-----CccEEEECCeecCc
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALHWR-----GKLTYILDGDNCRH  143 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~-----~~g~i~l~g~~~~~  143 (269)
                      .+..+|+|+|++||||||+++.|+..+..+     +...+.++.|++..
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~   68 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR   68 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence            455689999999999999999999977532     33466788777654

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.46  E-value=7.2e-05  Score=61.82  Aligned_cols=27  Identities=30%  Similarity=0.554  Sum_probs=24.8

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      .+|.+|+|+|++||||||+++.|+..+
T Consensus         2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            2 SRGALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            367899999999999999999999987

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.46  E-value=4e-05  Score=63.28  Aligned_cols=35  Identities=43%  Similarity=0.357  Sum_probs=28.4

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~  141 (269)
                      +..+|+|+|++||||||+++.|++.      |..+++.|++
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~------g~~~id~d~~   41 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW------GYPVLDLDAL   41 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT------TCCEEEHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC------CCEEEcccHH
Confidence            4578999999999999999999985      2346776654

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.46  E-value=0.00058  Score=64.19  Aligned_cols=42  Identities=31%  Similarity=0.375  Sum_probs=34.8

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~  142 (269)
                      ++.+++++|++||||||++..|+..+...+..+.+++.|..+
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r  137 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYR  137 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccc
Confidence            689999999999999999999999997666666666666443

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.44  E-value=6.5e-05  Score=62.37  Aligned_cols=22  Identities=45%  Similarity=0.530  Sum_probs=20.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhh
Q 024315          104 VIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      +++|+|+|||||||+++.|++ +
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~-~   24 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE-L   24 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH-T
T ss_pred             EEEEECCCCcCHHHHHHHHHH-C
Confidence            689999999999999999999 5

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=97.43  E-value=0.0001  Score=60.63  Aligned_cols=39  Identities=23%  Similarity=0.273  Sum_probs=31.2

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhhccC----------CccEEEECCeec
Q 024315          103 CVIWITGLSGSGKSTLACALSQALHWR----------GKLTYILDGDNC  141 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l~~~----------~~g~i~l~g~~~  141 (269)
                      -.++|+|+||||||||++.|.+..+..          ..+.+.++|.++
T Consensus        30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~   78 (191)
T 1oix_A           30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI   78 (191)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEE
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEE
Confidence            468999999999999999999976531          256788888654

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=97.42  E-value=4.4e-05  Score=68.27  Aligned_cols=40  Identities=25%  Similarity=0.223  Sum_probs=20.9

Q ss_pred             eEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHh-hc
Q 024315           82 ILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQA-LH  127 (269)
Q Consensus        82 ~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~-l~  127 (269)
                      +..++......+..++++      +|+|+||+|||||++.|.+. ++
T Consensus         4 l~~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~   44 (301)
T 2qnr_A            4 LPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY   44 (301)
T ss_dssp             --------------CEEE------EEEEETTSSHHHHHHHHHC----
T ss_pred             CcceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc
Confidence            334444455556666665      99999999999999999876 43

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=97.39  E-value=8.2e-05  Score=75.11  Aligned_cols=35  Identities=23%  Similarity=0.159  Sum_probs=30.4

Q ss_pred             eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315           91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus        91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      ...+.++. ++|++++|+|||||||||+++.|++..
T Consensus       597 vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~  631 (800)
T 1wb9_A          597 IANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIA  631 (800)
T ss_dssp             CCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence            34556777 889999999999999999999999875

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=97.38  E-value=0.00012  Score=67.21  Aligned_cols=35  Identities=29%  Similarity=0.227  Sum_probs=30.7

Q ss_pred             eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHH
Q 024315           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQ  124 (269)
Q Consensus        89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~  124 (269)
                      +......++.+.+| +++|+|+|||||||++++|..
T Consensus        14 ~~~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~   48 (359)
T 2o5v_A           14 YRNLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYL   48 (359)
T ss_dssp             BTTCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred             ccceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence            44456778888999 999999999999999999986

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.38  E-value=0.00022  Score=60.32  Aligned_cols=24  Identities=29%  Similarity=0.398  Sum_probs=22.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhc
Q 024315          104 VIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      +|+|+||+||||+|.++.|+..+.
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~g   25 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEKG   25 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            578999999999999999999884

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=97.33  E-value=5.4e-05  Score=67.37  Aligned_cols=42  Identities=31%  Similarity=0.455  Sum_probs=29.6

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~  142 (269)
                      ++.+|+|.|++||||||+++.|+..+...+.....++.|++.
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~   45 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH   45 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence            466899999999999999999998775322235577777765

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.32  E-value=0.00011  Score=66.83  Aligned_cols=47  Identities=23%  Similarity=0.181  Sum_probs=36.2

Q ss_pred             ccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECC
Q 024315           92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG  138 (269)
Q Consensus        92 ~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g  138 (269)
                      ..+.++...++.+++|+|++|+||||+++.|++.+...+.....++.
T Consensus        46 ~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~   92 (341)
T 2p67_A           46 LDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAV   92 (341)
T ss_dssp             HHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             HHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEee
Confidence            34556778899999999999999999999999988654433334443

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=97.32  E-value=0.0015  Score=54.99  Aligned_cols=33  Identities=24%  Similarity=0.302  Sum_probs=26.9

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHhhccCCccEEE
Q 024315          102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYI  135 (269)
Q Consensus       102 g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~  135 (269)
                      |.+|+|-|..||||||+++.|...|. .+..++.
T Consensus         2 ~kFI~~EG~dGsGKsTq~~~L~~~L~-~~~~v~~   34 (205)
T 4hlc_A            2 SAFITFEGPEGSGKTTVINEVYHRLV-KDYDVIM   34 (205)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHT-TTSCEEE
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHH-CCCCEEE
Confidence            57899999999999999999999884 4444443

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=97.32  E-value=0.00016  Score=67.50  Aligned_cols=32  Identities=31%  Similarity=0.246  Sum_probs=28.3

Q ss_pred             eecCCCeEEEEEcCCCChHHHHHHHHHHhhcc
Q 024315           97 LLQQKGCVIWITGLSGSGKSTLACALSQALHW  128 (269)
Q Consensus        97 l~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~  128 (269)
                      +.+.+|++++|+||||||||||+.+|...+..
T Consensus        21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~   52 (430)
T 1w1w_A           21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLGV   52 (430)
T ss_dssp             EECTTCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             EEecCCCEEEEECCCCCCHHHHHHHHHhhhcc
Confidence            55677899999999999999999999998753

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=97.31  E-value=0.00012  Score=75.77  Aligned_cols=36  Identities=22%  Similarity=0.183  Sum_probs=30.4

Q ss_pred             eccCcceecCC-------CeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315           91 KRDRQQLLQQK-------GCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus        91 ~~~r~sl~~~~-------g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      ...+.++.+.+       |++++|+|||||||||+++.+ +++.
T Consensus       771 v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~  813 (1022)
T 2o8b_B          771 IPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA  813 (1022)
T ss_dssp             CCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred             EeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH
Confidence            44556777776       899999999999999999999 7764

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=97.30  E-value=0.00014  Score=62.05  Aligned_cols=28  Identities=36%  Similarity=0.379  Sum_probs=25.4

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      .+|.+++|+|++||||||+++.|++.+.
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg   41 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAKDFG   41 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            5788999999999999999999998763

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.29  E-value=0.00016  Score=66.27  Aligned_cols=43  Identities=26%  Similarity=0.353  Sum_probs=36.2

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~  141 (269)
                      +++|+++.|.||||||||||+..++..+...+..++++++...
T Consensus        58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s  100 (356)
T 3hr8_A           58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHA  100 (356)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccc
Confidence            5789999999999999999999999987655555778887653

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.29  E-value=2.4e-05  Score=70.68  Aligned_cols=25  Identities=32%  Similarity=0.497  Sum_probs=23.4

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          103 CVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      +.++|+||||+|||||+++|++.+.
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~l~   76 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASELQ   76 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhC
Confidence            7899999999999999999999883

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.29  E-value=0.00018  Score=64.29  Aligned_cols=47  Identities=26%  Similarity=0.258  Sum_probs=37.3

Q ss_pred             cceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315           95 QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (269)
Q Consensus        95 ~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~  142 (269)
                      .++..+ |.+++++|++|+||||++..|++.+...+..+.+++.|..+
T Consensus        92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r  138 (297)
T 1j8m_F           92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR  138 (297)
T ss_dssp             CSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred             cccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            555655 99999999999999999999999987655556666666443

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.26  E-value=0.00012  Score=65.92  Aligned_cols=37  Identities=24%  Similarity=0.338  Sum_probs=25.6

Q ss_pred             EEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315          105 IWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (269)
Q Consensus       105 i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~  141 (269)
                      +.|+||||+||||+++.|++.+..+..|.+.+++.++
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~   75 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQF   75 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHHSCTTCCC--------
T ss_pred             EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceee
Confidence            8999999999999999999966556677777776543

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=97.25  E-value=7.3e-05  Score=62.26  Aligned_cols=25  Identities=44%  Similarity=0.562  Sum_probs=23.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhcc
Q 024315          104 VIWITGLSGSGKSTLACALSQALHW  128 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~~  128 (269)
                      +|+|+|++||||||+++.|.+.+..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~   26 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRA   26 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            6899999999999999999998854

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.24  E-value=0.0002  Score=60.19  Aligned_cols=35  Identities=37%  Similarity=0.471  Sum_probs=27.6

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~  141 (269)
                      ++.+|+|+|++||||||+++.|++ +.     ..+++.|.+
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~-lg-----~~~id~D~~   37 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD-LG-----INVIDADII   37 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH-TT-----CEEEEHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH-cC-----CEEEEccHH
Confidence            467899999999999999999988 42     345665543

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.21  E-value=0.00072  Score=58.13  Aligned_cols=37  Identities=22%  Similarity=0.336  Sum_probs=29.8

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~  142 (269)
                      .-+.|+||+|+||||++++|++.+..   ..+.+++.++.
T Consensus        46 ~~vll~G~~GtGKT~la~~la~~~~~---~~~~i~~~~~~   82 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAIAGEAKV---PFFTISGSDFV   82 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHTC---CEEEECSCSST
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHcCC---CEEEEeHHHHH
Confidence            34889999999999999999998743   36777776654

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=97.20  E-value=0.00027  Score=65.63  Aligned_cols=41  Identities=17%  Similarity=0.137  Sum_probs=33.0

Q ss_pred             ecCCCeEEEEEcCCCChHHHHHHHHHHhh-----------ccCCccEEEECC
Q 024315           98 LQQKGCVIWITGLSGSGKSTLACALSQAL-----------HWRGKLTYILDG  138 (269)
Q Consensus        98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~l-----------~~~~~g~i~l~g  138 (269)
                      .+.+|..++|+|+||+|||||+++|.+.-           ..+..|.+.+.+
T Consensus        16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~   67 (392)
T 1ni3_A           16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD   67 (392)
T ss_dssp             SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCC
Confidence            34679999999999999999999999932           135567777765

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=97.20  E-value=0.00014  Score=70.95  Aligned_cols=51  Identities=16%  Similarity=0.128  Sum_probs=41.6

Q ss_pred             eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315           91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (269)
Q Consensus        91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~  141 (269)
                      ..+..++.+++|+.++|+||||+|||||+++|++.+.....+.+.+.+...
T Consensus        49 ~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~   99 (604)
T 3k1j_A           49 AVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPE   99 (604)
T ss_dssp             HHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTT
T ss_pred             hHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcc
Confidence            345567888999999999999999999999999998655447777776554

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.18  E-value=0.00032  Score=63.94  Aligned_cols=30  Identities=27%  Similarity=0.324  Sum_probs=26.5

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhccC
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALHWR  129 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~  129 (269)
                      +++.+++|+|++|||||||++.|.+.+.+.
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~  101 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTER  101 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhhhc
Confidence            568899999999999999999999987543

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=97.16  E-value=0.0002  Score=67.01  Aligned_cols=49  Identities=8%  Similarity=0.142  Sum_probs=45.0

Q ss_pred             CCcccCCCcceeeeeeccccc--Cccccccccceeeccccccccccchhhhccccccccccc
Q 024315           13 RPAICSPSLAEVDFRTSVKMS--GFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQ   72 (269)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~f~~idr~~~~~~~~~~~~~~~~~gagmi~   72 (269)
                      +..|.+||++.|.|.+.+|++  +|.+++.||+|+++|+-++.           |+|+||+.
T Consensus       383 ~~~l~~~d~~~v~~~~~~p~~~~~~~~~~~~grf~l~d~~~~~-----------tv~~G~i~  433 (434)
T 1zun_B          383 ASSLQLNEIGRVKVSLDAPIALDGYSSNRTTGAFIVIDRLTNG-----------TVAAGMII  433 (434)
T ss_dssp             CSCBCTTCEEEEEEEEEEEEECCCTTTCTTTTEEEEECTTTCC-----------EEEEEEEE
T ss_pred             ccEeCCCCEEEEEEEECCeEEEcccccCCccceEEEEECCCCc-----------EEEEEEEe
Confidence            556999999999999999999  99999999999999998876           99999874

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.13  E-value=0.00045  Score=55.21  Aligned_cols=29  Identities=34%  Similarity=0.392  Sum_probs=23.5

Q ss_pred             eecCCCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315           97 LLQQKGCVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus        97 l~~~~g~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      +...+ .+.+|+|||||||||++.+|.-.+
T Consensus        19 i~f~~-g~~~I~G~NGsGKStil~Ai~~~l   47 (149)
T 1f2t_A           19 VEFKE-GINLIIGQNGSGKSSLLDAILVGL   47 (149)
T ss_dssp             EECCS-EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEcCC-CeEEEECCCCCCHHHHHHHHHHHH
Confidence            34444 488999999999999999998655

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=97.10  E-value=0.00033  Score=57.69  Aligned_cols=38  Identities=24%  Similarity=0.304  Sum_probs=29.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhcc----C------CccEEEECCeec
Q 024315          104 VIWITGLSGSGKSTLACALSQALHW----R------GKLTYILDGDNC  141 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~~----~------~~g~i~l~g~~~  141 (269)
                      .++|+|+||+|||||++.|.+..+.    +      ..+.+.++|..+
T Consensus         7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~   54 (199)
T 2f9l_A            7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI   54 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEE
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEE
Confidence            5899999999999999999987531    1      145677888654

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=97.07  E-value=0.0019  Score=60.66  Aligned_cols=51  Identities=18%  Similarity=0.173  Sum_probs=38.5

Q ss_pred             eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc-CCccEEEECCe
Q 024315           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW-RGKLTYILDGD  139 (269)
Q Consensus        89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~-~~~g~i~l~g~  139 (269)
                      +...++...-+++|+++.|.|+||+||||++..++..+.. .+..+++++..
T Consensus       190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E  241 (454)
T 2r6a_A          190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE  241 (454)
T ss_dssp             CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred             cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence            4444555556899999999999999999999999987743 34456666543

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.07  E-value=0.00017  Score=67.48  Aligned_cols=41  Identities=24%  Similarity=0.158  Sum_probs=29.4

Q ss_pred             ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus        81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      ++...+.......+.++++      +|+|+||+|||||++.|.+...
T Consensus        16 ~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~   56 (418)
T 2qag_C           16 NLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDL   56 (418)
T ss_dssp             CCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCC
T ss_pred             ecceeECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCC
Confidence            3444444444455566654      9999999999999999999775

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.06  E-value=0.0005  Score=56.51  Aligned_cols=28  Identities=32%  Similarity=0.289  Sum_probs=24.8

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhhccCC
Q 024315          103 CVIWITGLSGSGKSTLACALSQALHWRG  130 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l~~~~  130 (269)
                      .+++|+|++|||||||+..|.+.+...+
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g   32 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAAVREG   32 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhhHhcC
Confidence            4789999999999999999999886554

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=97.04  E-value=0.00038  Score=63.53  Aligned_cols=43  Identities=28%  Similarity=0.324  Sum_probs=35.4

Q ss_pred             ecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee
Q 024315           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (269)
Q Consensus        98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~  140 (269)
                      -+++|+++.|.|+||||||||+..++......+..+++++...
T Consensus        57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~   99 (349)
T 2zr9_A           57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH   99 (349)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence            3579999999999999999999999876655566677887654

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.03  E-value=0.00054  Score=56.41  Aligned_cols=37  Identities=30%  Similarity=0.190  Sum_probs=28.3

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHhhccCC--ccEEEECC
Q 024315          102 GCVIWITGLSGSGKSTLACALSQALHWRG--KLTYILDG  138 (269)
Q Consensus       102 g~~i~l~G~sGsGKSTla~~L~~~l~~~~--~g~i~l~g  138 (269)
                      -.+++|+|+||||||||++.|.+.+...+  -+.+..+.
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~   44 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH   44 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence            35789999999999999999999875443  24455444

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=97.02  E-value=0.00043  Score=66.21  Aligned_cols=45  Identities=22%  Similarity=0.267  Sum_probs=35.4

Q ss_pred             cCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315           93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (269)
Q Consensus        93 ~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~  142 (269)
                      .+.++.+++|  +.|+||||+|||||+++|++.+.   .+.+.+++.++.
T Consensus        57 ~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~---~~~i~i~g~~~~  101 (499)
T 2dhr_A           57 HEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDFV  101 (499)
T ss_dssp             TTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT---CCEEEEEGGGGT
T ss_pred             hhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC---CCEEEEehhHHH
Confidence            4455666777  88999999999999999999774   457778776543

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.01  E-value=0.00051  Score=57.52  Aligned_cols=41  Identities=15%  Similarity=0.090  Sum_probs=32.4

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~  141 (269)
                      .+..+.|.||+|+||||+++.++..+...+...++++..++
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~   91 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH   91 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence            57789999999999999999999988655555566665443

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=97.01  E-value=0.00026  Score=66.21  Aligned_cols=33  Identities=27%  Similarity=0.322  Sum_probs=30.6

Q ss_pred             cCcceecCCCeEEEEEcCCCChHHHHHHHHHHh
Q 024315           93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus        93 ~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      ..+++.++.++.++|+|+||||||||+++|.+.
T Consensus       148 ~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~  180 (416)
T 1udx_A          148 RRLRLELMLIADVGLVGYPNAGKSSLLAAMTRA  180 (416)
T ss_dssp             EEEEEEECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred             eeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence            456899999999999999999999999999987

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=96.95  E-value=0.00042  Score=57.78  Aligned_cols=24  Identities=46%  Similarity=0.469  Sum_probs=21.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhc
Q 024315          104 VIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      .|+|+||||||||||++.|...++
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~~~   26 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhCC
Confidence            378999999999999999987653

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=96.95  E-value=0.00078  Score=63.47  Aligned_cols=42  Identities=29%  Similarity=0.462  Sum_probs=37.1

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~  142 (269)
                      ++.+++++|++|+||||++..|+..+...|..+.+++.|..+
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R  140 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWR  140 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSS
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence            578999999999999999999999987777778888888665

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=96.92  E-value=0.00046  Score=66.62  Aligned_cols=42  Identities=29%  Similarity=0.434  Sum_probs=32.1

Q ss_pred             cceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECC
Q 024315           95 QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG  138 (269)
Q Consensus        95 ~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g  138 (269)
                      .++.+ +|..+.|+||||+|||||+++|++.+. +..+.+.+++
T Consensus       102 ~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~-~~~~~i~~~~  143 (543)
T 3m6a_A          102 LTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG-RKFVRISLGG  143 (543)
T ss_dssp             HSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT-CEEEEECCCC
T ss_pred             hcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC-CCeEEEEecc
Confidence            34444 799999999999999999999999884 3344444444

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.90  E-value=0.00087  Score=58.90  Aligned_cols=40  Identities=23%  Similarity=0.194  Sum_probs=31.1

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~  140 (269)
                      +...+.|+||+|+||||+++.|++.+...+...+.++...
T Consensus        46 ~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~   85 (311)
T 4fcw_A           46 PIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTE   85 (311)
T ss_dssp             CSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGG
T ss_pred             CceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccc
Confidence            4468999999999999999999998864444466665443

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.89  E-value=0.00073  Score=61.56  Aligned_cols=34  Identities=29%  Similarity=0.512  Sum_probs=27.8

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~  141 (269)
                      .+++|+||+|||||||++.|+..+.     ...++.|..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~-----~~iis~Ds~   41 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFN-----GEIISGDSM   41 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT-----EEEEECCSS
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcC-----Cceeccccc
Confidence            5899999999999999999999874     345665554

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=96.88  E-value=0.00043  Score=65.03  Aligned_cols=48  Identities=6%  Similarity=0.025  Sum_probs=42.9

Q ss_pred             CCcccCCCcceeeeeeccccc--Cccccccccceeeccccccccccchhhhcccccccccccc
Q 024315           13 RPAICSPSLAEVDFRTSVKMS--GFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQN   73 (269)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~f~~idr~~~~~~~~~~~~~~~~~gagmi~~   73 (269)
                      |..|.+||+|.|++.+.+|++  +|.+++.+|+|+++|+  +.           |+|+||+..
T Consensus       387 ~~~l~~~~~~~v~~~~~~p~~~e~~~~~~~~g~f~l~d~--~~-----------tv~~G~i~~  436 (439)
T 3j2k_7          387 PRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDE--GK-----------TIAIGKVLK  436 (439)
T ss_pred             cceecCCcEEEEEEEeCCeEEEeeccccccCCCEEEEEC--Cc-----------eEEEEEEEE
Confidence            445999999999999999999  9999999999999998  43           999999853

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.86  E-value=0.0003  Score=64.48  Aligned_cols=33  Identities=30%  Similarity=0.373  Sum_probs=27.8

Q ss_pred             cceecCCCeE--EEEEcCCCChHHHHHHHHHHhhc
Q 024315           95 QQLLQQKGCV--IWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus        95 ~sl~~~~g~~--i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      .++.+++|+.  +.|+|++||||||+++.|++.+.
T Consensus        15 l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~   49 (359)
T 2ga8_A           15 LDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN   49 (359)
T ss_dssp             HHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence            3455667777  99999999999999999999874

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.85  E-value=0.00072  Score=61.18  Aligned_cols=25  Identities=40%  Similarity=0.596  Sum_probs=23.0

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          103 CVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      .+++|+||+||||||+++.|++.+.
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l~   30 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADALP   30 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcC
Confidence            5899999999999999999999874

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=96.84  E-value=0.00078  Score=57.75  Aligned_cols=38  Identities=29%  Similarity=0.289  Sum_probs=29.2

Q ss_pred             ceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc-CCccE
Q 024315           96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHW-RGKLT  133 (269)
Q Consensus        96 sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~-~~~g~  133 (269)
                      ....++|.+|+|.|++||||||+++.|...+.. .+..+
T Consensus        15 ~~~~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v   53 (223)
T 3ld9_A           15 QTQGPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNN   53 (223)
T ss_dssp             ----CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGG
T ss_pred             cccCCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCcee
Confidence            345578999999999999999999999998865 44333

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.83  E-value=0.0011  Score=54.79  Aligned_cols=35  Identities=26%  Similarity=0.342  Sum_probs=27.5

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhhccCCccEEEEC
Q 024315          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILD  137 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~  137 (269)
                      ..+.|.|++|+|||||+++|...+...+...++++
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~   89 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY   89 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence            67889999999999999999998854444444443

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.80  E-value=0.00065  Score=60.23  Aligned_cols=41  Identities=20%  Similarity=0.181  Sum_probs=32.6

Q ss_pred             ecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (269)
Q Consensus        98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~  141 (269)
                      .+.++..+.|.||+|+||||++++|++.+.   .+.+.+++.++
T Consensus        45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~~---~~~i~v~~~~l   85 (301)
T 3cf0_A           45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISIKGPEL   85 (301)
T ss_dssp             CCCCCSEEEEECSSSSSHHHHHHHHHHHTT---CEEEEECHHHH
T ss_pred             CCCCCceEEEECCCCcCHHHHHHHHHHHhC---CCEEEEEhHHH
Confidence            457788999999999999999999999774   44566665443

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=96.80  E-value=0.0054  Score=57.53  Aligned_cols=43  Identities=30%  Similarity=0.443  Sum_probs=37.5

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhccC-CccEEEECCeecC
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALHWR-GKLTYILDGDNCR  142 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~-~~g~i~l~g~~~~  142 (269)
                      .++.+++++|++|+||||++..|+..+... |..+.+++.|..+
T Consensus        98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r  141 (433)
T 2xxa_A           98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYR  141 (433)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence            457899999999999999999999988766 7788899988665

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=96.79  E-value=0.00066  Score=54.71  Aligned_cols=27  Identities=33%  Similarity=0.418  Sum_probs=23.0

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      ++|..++|+|++|+|||||++.|.+..
T Consensus         2 ~~~~ki~ivG~~g~GKStLl~~l~~~~   28 (172)
T 2gj8_A            2 SHGMKVVIAGRPNAGKSSLLNALAGRE   28 (172)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467889999999999999999999753

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.75  E-value=0.0015  Score=52.16  Aligned_cols=28  Identities=21%  Similarity=0.280  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      ..+..+.|+|++|+||||+++.++..+.
T Consensus        41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~   68 (195)
T 1jbk_A           41 RTKNNPVLIGEPGVGKTAIVEGLAQRII   68 (195)
T ss_dssp             SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence            3456788999999999999999999874

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.74  E-value=0.00081  Score=59.26  Aligned_cols=36  Identities=44%  Similarity=0.638  Sum_probs=27.3

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~  141 (269)
                      ....+|+|+|++||||||+++.|+. +.     ..+++.|.+
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La~-lg-----~~~id~D~~  108 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLKN-LG-----AYIIDSDHL  108 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHHH-HT-----CEEEEHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH-CC-----CcEEehhHH
Confidence            3467899999999999999999994 42     235655544

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=96.74  E-value=0.0017  Score=58.95  Aligned_cols=43  Identities=19%  Similarity=0.176  Sum_probs=34.3

Q ss_pred             ecCCCeEEEEEcCCCChHHHHHHHHHHhhcc------CCccEEEECCee
Q 024315           98 LQQKGCVIWITGLSGSGKSTLACALSQALHW------RGKLTYILDGDN  140 (269)
Q Consensus        98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~------~~~g~i~l~g~~  140 (269)
                      -+++|+++.|.|++|||||||+..++...-.      .+.++++++...
T Consensus       118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~  166 (343)
T 1v5w_A          118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN  166 (343)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence            4689999999999999999999999875311      245677887754

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=96.72  E-value=0.0013  Score=55.86  Aligned_cols=31  Identities=32%  Similarity=0.436  Sum_probs=27.5

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhccCCc
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALHWRGK  131 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~  131 (269)
                      +|.+|+|.|++||||||+++.|...|...+.
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~   32 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGI   32 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHTTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence            5889999999999999999999999876553

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.71  E-value=0.00025  Score=63.86  Aligned_cols=35  Identities=20%  Similarity=0.346  Sum_probs=28.7

Q ss_pred             CcceecCCCeE--EEEEcCCCChHHHHHHHHHHhhcc
Q 024315           94 RQQLLQQKGCV--IWITGLSGSGKSTLACALSQALHW  128 (269)
Q Consensus        94 r~sl~~~~g~~--i~l~G~sGsGKSTla~~L~~~l~~  128 (269)
                      ..+..++.|++  +.|.||+|+||||+++++++.+..
T Consensus        36 ~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~   72 (340)
T 1sxj_C           36 TVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG   72 (340)
T ss_dssp             HHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence            33455666776  899999999999999999998853

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=96.70  E-value=0.0096  Score=54.07  Aligned_cols=51  Identities=14%  Similarity=0.096  Sum_probs=37.8

Q ss_pred             eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCe
Q 024315           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD  139 (269)
Q Consensus        89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~  139 (269)
                      +...++..--+++|+++.|.|++|+||||++..++..+...+..+.+++..
T Consensus        33 ~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE   83 (338)
T 4a1f_A           33 FVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE   83 (338)
T ss_dssp             CHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             ChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence            444444444579999999999999999999999988764445556666543

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=96.70  E-value=0.0012  Score=59.17  Aligned_cols=43  Identities=21%  Similarity=0.195  Sum_probs=34.5

Q ss_pred             ecCCCeEEEEEcCCCChHHHHHHHHHHhhccC------CccEEEECCee
Q 024315           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWR------GKLTYILDGDN  140 (269)
Q Consensus        98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~------~~g~i~l~g~~  140 (269)
                      -+++|+++.|.|++||||||++..++...-.+      +..+++++...
T Consensus       103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~  151 (324)
T 2z43_A          103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG  151 (324)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred             CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence            46789999999999999999999998764323      45677887654

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.65  E-value=0.0017  Score=58.58  Aligned_cols=27  Identities=26%  Similarity=0.395  Sum_probs=23.9

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      ++.+++|+||+|||||||+..|+..+.
T Consensus         2 ~~~~i~i~GptgsGKt~la~~La~~~~   28 (322)
T 3exa_A            2 KEKLVAIVGPTAVGKTKTSVMLAKRLN   28 (322)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred             CCcEEEEECCCcCCHHHHHHHHHHhCc
Confidence            356899999999999999999998774

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=96.64  E-value=0.00069  Score=64.80  Aligned_cols=37  Identities=27%  Similarity=0.297  Sum_probs=31.8

Q ss_pred             ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHh
Q 024315           88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus        88 ~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      +|...+..++.+.+| +.+|+|+||||||||+.+|...
T Consensus        47 nf~~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l   83 (517)
T 4ad8_A           47 NLATITQLELELGGG-FCAFTGETGAGKSIIVDALGLL   83 (517)
T ss_dssp             SBTTBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred             cccceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence            455566788888899 9999999999999999999765

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.60  E-value=0.0012  Score=56.29  Aligned_cols=27  Identities=26%  Similarity=0.210  Sum_probs=24.4

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      +|.+|+|.|..||||||+++.|+..+.
T Consensus         1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            1 GPRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            467899999999999999999999873

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.54  E-value=0.0021  Score=51.32  Aligned_cols=28  Identities=18%  Similarity=0.217  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      ..+..+.|+|++|+||||+++.++..+.
T Consensus        41 ~~~~~vll~G~~G~GKT~la~~~~~~~~   68 (187)
T 2p65_A           41 RTKNNPILLGDPGVGKTAIVEGLAIKIV   68 (187)
T ss_dssp             SSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence            3455678999999999999999999874

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.53  E-value=0.0023  Score=57.66  Aligned_cols=39  Identities=15%  Similarity=0.118  Sum_probs=30.7

Q ss_pred             CCCe--EEEEEcCCCChHHHHHHHHHHhhccC-CccEEEECC
Q 024315          100 QKGC--VIWITGLSGSGKSTLACALSQALHWR-GKLTYILDG  138 (269)
Q Consensus       100 ~~g~--~i~l~G~sGsGKSTla~~L~~~l~~~-~~g~i~l~g  138 (269)
                      ..+.  .+.|+||+|+||||+++.+.+.+... +...+.++.
T Consensus        40 ~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~   81 (389)
T 1fnn_A           40 PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYING   81 (389)
T ss_dssp             TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEET
T ss_pred             CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeC
Confidence            4556  89999999999999999999988544 345566653

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.52  E-value=0.0014  Score=55.46  Aligned_cols=28  Identities=46%  Similarity=0.421  Sum_probs=24.8

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      -.|..+.|+|++|+|||||+..|++..+
T Consensus        32 ~~g~~ilI~GpsGsGKStLA~~La~~g~   59 (205)
T 2qmh_A           32 IYGLGVLITGDSGVGKSETALELVQRGH   59 (205)
T ss_dssp             ETTEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred             ECCEEEEEECCCCCCHHHHHHHHHHhCC
Confidence            4678899999999999999999988754

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.51  E-value=0.0071  Score=51.49  Aligned_cols=39  Identities=21%  Similarity=0.202  Sum_probs=29.8

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~  141 (269)
                      ..+.-+.|.||+|+||||++++++..+..   ..+.++..++
T Consensus        37 ~~~~~vll~G~~GtGKT~la~~la~~~~~---~~~~~~~~~~   75 (262)
T 2qz4_A           37 KVPKGALLLGPPGCGKTLLAKAVATEAQV---PFLAMAGAEF   75 (262)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHHHTC---CEEEEETTTT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhCC---CEEEechHHH
Confidence            45556889999999999999999998743   3556655444

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.51  E-value=0.0051  Score=53.30  Aligned_cols=40  Identities=23%  Similarity=0.216  Sum_probs=30.2

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~  141 (269)
                      ..++.-+.|.||+|+||||++++++..+.   ...+.++...+
T Consensus        48 ~~~~~~~ll~G~~GtGKT~la~~la~~~~---~~~~~v~~~~~   87 (285)
T 3h4m_A           48 IEPPKGILLYGPPGTGKTLLAKAVATETN---ATFIRVVGSEL   87 (285)
T ss_dssp             CCCCSEEEEESSSSSSHHHHHHHHHHHTT---CEEEEEEGGGG
T ss_pred             CCCCCeEEEECCCCCcHHHHHHHHHHHhC---CCEEEEehHHH
Confidence            35666799999999999999999999874   23455554444

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=96.51  E-value=0.0023  Score=52.87  Aligned_cols=33  Identities=27%  Similarity=0.207  Sum_probs=24.6

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhccCCccE
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLT  133 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~  133 (269)
                      +|.++.++|++||||||++..++..+...+..+
T Consensus         2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v   34 (184)
T 2orw_A            2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKV   34 (184)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCEE
T ss_pred             ccEEEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence            478999999999999999866665553344333

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.49  E-value=0.0013  Score=58.96  Aligned_cols=40  Identities=25%  Similarity=0.365  Sum_probs=30.9

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHHhhccC---CccEEEECC
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQALHWR---GKLTYILDG  138 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~---~~g~i~l~g  138 (269)
                      ...+..+.|+|++|+|||||++.+.+.+...   +...+.++.
T Consensus        42 ~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~   84 (386)
T 2qby_A           42 EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINT   84 (386)
T ss_dssp             TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEH
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEC
Confidence            3567889999999999999999999987432   344556654

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.49  E-value=0.0016  Score=56.93  Aligned_cols=28  Identities=25%  Similarity=0.315  Sum_probs=24.7

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      .++..+.|.||+|+||||+++++++.+.
T Consensus        52 ~~~~~vll~Gp~GtGKT~la~~la~~~~   79 (297)
T 3b9p_A           52 APAKGLLLFGPPGNGKTLLARAVATECS   79 (297)
T ss_dssp             CCCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred             CCCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence            4567889999999999999999999774

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.49  E-value=0.00082  Score=58.25  Aligned_cols=28  Identities=32%  Similarity=0.242  Sum_probs=24.9

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      .++.+|+|.|+.||||||+++.|+..+.
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~   49 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQLCE   49 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            5788999999999999999999998873

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=96.49  E-value=0.002  Score=59.00  Aligned_cols=42  Identities=29%  Similarity=0.388  Sum_probs=35.4

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~  140 (269)
                      +++|.++.|.|++|+|||||+..++......+..+++++...
T Consensus        60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~  101 (356)
T 1u94_A           60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH  101 (356)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            579999999999999999999999877655566788888743

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.48  E-value=0.0026  Score=57.28  Aligned_cols=27  Identities=33%  Similarity=0.452  Sum_probs=24.0

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      .+.+++|+||+|||||||+..|+..+.
T Consensus         9 ~~~~i~i~GptgsGKt~la~~La~~~~   35 (316)
T 3foz_A            9 LPKAIFLMGPTASGKTALAIELRKILP   35 (316)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCcEEEEECCCccCHHHHHHHHHHhCC
Confidence            356899999999999999999999874

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=96.47  E-value=0.0013  Score=66.71  Aligned_cols=47  Identities=15%  Similarity=0.089  Sum_probs=34.7

Q ss_pred             eccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHH
Q 024315          179 ACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (269)
Q Consensus       179 v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~  225 (269)
                      +..+++++++| .+++++..++.-..+.+|||+..|+.++.+.+.+.+
T Consensus       377 ~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l  424 (842)
T 2vf7_A          377 TPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSAL  424 (842)
T ss_dssp             GGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHH
T ss_pred             cCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHH
Confidence            34457777777 577777777631128999999999999998877643

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.47  E-value=0.0016  Score=57.87  Aligned_cols=38  Identities=26%  Similarity=0.227  Sum_probs=29.2

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECC
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG  138 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g  138 (269)
                      .+..+.|.||+|+|||||++++.+.+...+...+.++.
T Consensus        36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~   73 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA   73 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEH
Confidence            45678899999999999999999988543344555543

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=96.46  E-value=0.0021  Score=53.85  Aligned_cols=25  Identities=40%  Similarity=0.437  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          103 CVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      .+.+|+|+|||||||++.+|.-.+.
T Consensus        24 ~~~~I~G~NgsGKStil~ai~~~l~   48 (203)
T 3qks_A           24 GINLIIGQNGSGKSSLLDAILVGLY   48 (203)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence            4888999999999999999975554

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.45  E-value=0.0052  Score=57.72  Aligned_cols=42  Identities=19%  Similarity=0.052  Sum_probs=33.2

Q ss_pred             ecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (269)
Q Consensus        98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~  142 (269)
                      -++++.=+.|.||+|+|||++++++++.+..   ..+.+++..+.
T Consensus       211 g~~~prGvLLyGPPGTGKTllAkAiA~e~~~---~f~~v~~s~l~  252 (434)
T 4b4t_M          211 GIRAPKGALMYGPPGTGKTLLARACAAQTNA---TFLKLAAPQLV  252 (434)
T ss_dssp             CCCCCCEEEEESCTTSSHHHHHHHHHHHHTC---EEEEEEGGGGC
T ss_pred             CCCCCCeeEEECcCCCCHHHHHHHHHHHhCC---CEEEEehhhhh
Confidence            4566778899999999999999999998753   35666665554

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=96.44  E-value=0.0019  Score=55.02  Aligned_cols=29  Identities=34%  Similarity=0.456  Sum_probs=26.6

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhcc
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALHW  128 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~  128 (269)
                      .+|.+|+|.|++||||||+++.|...+..
T Consensus         3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~   31 (216)
T 3tmk_A            3 GRGKLILIEGLDRTGKTTQCNILYKKLQP   31 (216)
T ss_dssp             CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            47899999999999999999999999864

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.41  E-value=0.0059  Score=57.25  Aligned_cols=42  Identities=17%  Similarity=0.190  Sum_probs=32.7

Q ss_pred             ecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (269)
Q Consensus        98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~  142 (269)
                      -+.++.=+.|.||+|+|||++++++++.+.   ...+.+++..+.
T Consensus       202 g~~~prGiLL~GPPGtGKT~lakAiA~~~~---~~~~~v~~~~l~  243 (428)
T 4b4t_K          202 GIDPPRGVLLYGPPGTGKTMLVKAVANSTK---AAFIRVNGSEFV  243 (428)
T ss_dssp             CCCCCCEEEEESCTTTTHHHHHHHHHHHHT---CEEEEEEGGGTC
T ss_pred             CCCCCceEEEECCCCCCHHHHHHHHHHHhC---CCeEEEecchhh
Confidence            355666789999999999999999999885   345666665543

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=96.39  E-value=0.0022  Score=57.95  Aligned_cols=44  Identities=11%  Similarity=0.138  Sum_probs=33.2

Q ss_pred             cCChHHHHH-------HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315          181 LISPYRKDR-------DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       181 ~~~~~~~~r-------~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      ..+++++++       ..++.++.++++  +++|+|+..++....+.+.+.++
T Consensus       248 ~lS~G~~~~~~la~~l~~a~~l~~~p~~--lllDEp~~~LD~~~~~~l~~~l~  298 (339)
T 3qkt_A          248 FLSGGERIALGLAFRLAMSLYLAGEISL--LILDEPTPYLDEERRRKLITIME  298 (339)
T ss_dssp             GSCHHHHHHHHHHHHHHHHHHTTTTTCE--EEEECCCTTCCHHHHHHHHHHHH
T ss_pred             HCCHHHHHHHHHHHHHHHHHHhcCCCCE--EEEECCCCCCCHHHHHHHHHHHH
Confidence            356666652       456777778888  99999999999988887776654

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=96.39  E-value=0.0016  Score=51.75  Aligned_cols=24  Identities=33%  Similarity=0.289  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhh
Q 024315          103 CVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      ..++|+|++|+|||||++.|.+..
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~~   27 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGEN   27 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            468999999999999999998753

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.38  E-value=0.0053  Score=57.09  Aligned_cols=42  Identities=19%  Similarity=0.152  Sum_probs=32.5

Q ss_pred             ecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (269)
Q Consensus        98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~  142 (269)
                      -++++.=+.|.||+|+|||.||+++++.+..   ..+.+++..+.
T Consensus       178 gi~~prGvLL~GPPGTGKTllAkAiA~e~~~---~f~~v~~s~l~  219 (405)
T 4b4t_J          178 GIAQPKGVILYGPPGTGKTLLARAVAHHTDC---KFIRVSGAELV  219 (405)
T ss_dssp             TCCCCCCEEEESCSSSSHHHHHHHHHHHHTC---EEEEEEGGGGS
T ss_pred             CCCCCCceEEeCCCCCCHHHHHHHHHHhhCC---CceEEEhHHhh
Confidence            3556666889999999999999999998753   35666665554

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=96.37  E-value=0.003  Score=57.43  Aligned_cols=41  Identities=37%  Similarity=0.358  Sum_probs=32.4

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~  140 (269)
                      ....+++|+|++|+|||||+..|+..+...+..+..++.|.
T Consensus        77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp  117 (355)
T 3p32_A           77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDP  117 (355)
T ss_dssp             CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCC
Confidence            45668999999999999999999988865566566666653

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.37  E-value=0.0021  Score=50.52  Aligned_cols=38  Identities=21%  Similarity=0.212  Sum_probs=27.6

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECC
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG  138 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g  138 (269)
                      +.+.-+.|.|++|+|||++++.|.......+...+ ++.
T Consensus        22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~   59 (145)
T 3n70_A           22 ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRE   59 (145)
T ss_dssp             TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEE
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EEC
Confidence            45556899999999999999999987643333333 443

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=96.36  E-value=0.0016  Score=66.67  Aligned_cols=40  Identities=33%  Similarity=0.456  Sum_probs=32.3

Q ss_pred             ceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHH
Q 024315           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLAC  120 (269)
Q Consensus        81 ~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~  120 (269)
                      .|.......--..++++.++++++++|+|+|||||||||-
T Consensus        23 ~I~i~gar~hNLkni~v~iP~~~lvv~tG~SGSGKSSLaf   62 (972)
T 2r6f_A           23 KIIVKGARAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAF   62 (972)
T ss_dssp             EEEEEEECSSSCCSEEEEEETTSEEEEEESTTSSHHHHHT
T ss_pred             eEEEeccccccCCceeeeccCCcEEEEECCCCCCHHHHHH
Confidence            3555544455567789999999999999999999999973

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.36  E-value=0.0029  Score=55.48  Aligned_cols=42  Identities=26%  Similarity=0.313  Sum_probs=31.2

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhccCC----ccEEEECCeec
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALHWRG----KLTYILDGDNC  141 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~----~g~i~l~g~~~  141 (269)
                      .++..+.|.||+|+|||++++.++..++..+    ...+.++...+
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l  110 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL  110 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence            4556789999999999999999999885432    14556665444

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=96.36  E-value=0.0026  Score=58.37  Aligned_cols=38  Identities=26%  Similarity=0.165  Sum_probs=30.1

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECC
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG  138 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g  138 (269)
                      .+..++|+|++||||||+++.|...+...+...+.+|-
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~   71 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDP   71 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeC
Confidence            45568899999999999999999877655555666653

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.35  E-value=0.0064  Score=57.15  Aligned_cols=42  Identities=17%  Similarity=0.087  Sum_probs=33.0

Q ss_pred             ecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (269)
Q Consensus        98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~  142 (269)
                      -+.++.=+.|.||+|+|||+|+++|++.+..   ..+.+++..+.
T Consensus       211 g~~~prGvLL~GPPGtGKTllAkAiA~e~~~---~~~~v~~s~l~  252 (437)
T 4b4t_L          211 GIKPPKGVLLYGPPGTGKTLLAKAVAATIGA---NFIFSPASGIV  252 (437)
T ss_dssp             CCCCCCEEEEESCTTSSHHHHHHHHHHHHTC---EEEEEEGGGTC
T ss_pred             CCCCCCeEEEECCCCCcHHHHHHHHHHHhCC---CEEEEehhhhc
Confidence            4567778899999999999999999998753   35666665553

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=96.33  E-value=0.0013  Score=61.70  Aligned_cols=42  Identities=36%  Similarity=0.544  Sum_probs=34.9

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~  142 (269)
                      ++.+++++|++|+||||++..|+..+...|..+.+++.|..+
T Consensus        98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r  139 (432)
T 2v3c_C           98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYR  139 (432)
T ss_dssp             SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccC
Confidence            456899999999999999999999886555667788887654

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=96.31  E-value=0.0037  Score=55.90  Aligned_cols=51  Identities=12%  Similarity=0.140  Sum_probs=36.9

Q ss_pred             eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCe
Q 024315           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD  139 (269)
Q Consensus        89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~  139 (269)
                      +...++..--+++|+++.|.|++|+||||++..++...-..+..++++...
T Consensus        55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE  105 (315)
T 3bh0_A           55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE  105 (315)
T ss_dssp             CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence            334444444479999999999999999999999986654344456666543

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=96.29  E-value=0.0015  Score=66.70  Aligned_cols=29  Identities=41%  Similarity=0.512  Sum_probs=26.2

Q ss_pred             eccCcceecCCCeEEEEEcCCCChHHHHH
Q 024315           91 KRDRQQLLQQKGCVIWITGLSGSGKSTLA  119 (269)
Q Consensus        91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla  119 (269)
                      -..++++.++++++++|+|+||||||+||
T Consensus        13 NLkni~~~ip~~~l~v~tG~SGSGKSsLa   41 (916)
T 3pih_A           13 NLKNITVRIPKNRLVVITGVSGSGKSSLA   41 (916)
T ss_dssp             TCCSBCCEEETTSEEEEEESTTSSSHHHH
T ss_pred             ccCcceeccCCCcEEEEECCCCCcHHHHH
Confidence            45667889999999999999999999998

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=96.28  E-value=0.0018  Score=57.51  Aligned_cols=27  Identities=33%  Similarity=0.206  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      .++..++|+|++|+|||||++.|.+.-
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~g~~   32 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLLGQK   32 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHCCC
Confidence            344589999999999999999999753

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=96.26  E-value=0.005  Score=52.60  Aligned_cols=42  Identities=21%  Similarity=0.281  Sum_probs=34.8

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~  141 (269)
                      ..+.-+++++|..|+||||++..|+..+. .+..+..++.|.-
T Consensus        11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~   52 (262)
T 1yrb_A           11 GMASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTG   52 (262)
T ss_dssp             TCCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSS
T ss_pred             CcceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCC
Confidence            35567889999999999999999998887 6667778887653

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=96.26  E-value=0.022  Score=50.96  Aligned_cols=28  Identities=29%  Similarity=0.459  Sum_probs=24.9

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      ..+..+.|.||+|+||||+++.+.+.+.
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~   69 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLRRLE   69 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence            5667899999999999999999998874

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=96.25  E-value=0.0033  Score=59.74  Aligned_cols=41  Identities=27%  Similarity=0.413  Sum_probs=30.0

Q ss_pred             ceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315           96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (269)
Q Consensus        96 sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~  141 (269)
                      .+..++|  +.|+||||+|||||++++++.+..+   .+.+++.++
T Consensus        45 g~~~p~g--vLL~GppGtGKT~Laraia~~~~~~---f~~is~~~~   85 (476)
T 2ce7_A           45 GARMPKG--ILLVGPPGTGKTLLARAVAGEANVP---FFHISGSDF   85 (476)
T ss_dssp             TCCCCSE--EEEECCTTSSHHHHHHHHHHHHTCC---EEEEEGGGT
T ss_pred             CCCCCCe--EEEECCCCCCHHHHHHHHHHHcCCC---eeeCCHHHH
Confidence            3444555  7899999999999999999987432   455555444

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.22  E-value=0.0092  Score=55.94  Aligned_cols=42  Identities=19%  Similarity=0.150  Sum_probs=33.3

Q ss_pred             ecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (269)
Q Consensus        98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~  142 (269)
                      -++++.=+.|.||+|+|||.||++|++.+.   ...+.+++.++.
T Consensus       212 Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~---~~fi~v~~s~l~  253 (437)
T 4b4t_I          212 GIKPPKGVILYGAPGTGKTLLAKAVANQTS---ATFLRIVGSELI  253 (437)
T ss_dssp             TCCCCSEEEEESSTTTTHHHHHHHHHHHHT---CEEEEEESGGGC
T ss_pred             CCCCCCCCceECCCCchHHHHHHHHHHHhC---CCEEEEEHHHhh
Confidence            356677799999999999999999999875   336667766654

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=96.22  E-value=0.0046  Score=52.90  Aligned_cols=37  Identities=19%  Similarity=0.220  Sum_probs=29.5

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEE
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL  136 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l  136 (269)
                      .+|.++.++|++|+||||++..++..+...+..++++
T Consensus        10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~   46 (223)
T 2b8t_A           10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF   46 (223)
T ss_dssp             -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence            5689999999999999999888887775555555555

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=96.20  E-value=0.0025  Score=51.27  Aligned_cols=23  Identities=35%  Similarity=0.345  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHh
Q 024315          103 CVIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      -.++|+|++|+|||||++.|.+.
T Consensus         8 ~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            8 YEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999999874

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.20  E-value=0.0029  Score=55.95  Aligned_cols=37  Identities=16%  Similarity=0.118  Sum_probs=28.4

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECC
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG  138 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g  138 (269)
                      .+.+..+.|.||+|+|||+|+++|+..+.   ...+.++.
T Consensus        33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~---~~~i~v~~   69 (293)
T 3t15_A           33 IKVPLILGIWGGKGQGKSFQCELVFRKMG---INPIMMSA   69 (293)
T ss_dssp             CCCCSEEEEEECTTSCHHHHHHHHHHHHT---CCCEEEEH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhC---CCEEEEeH
Confidence            34556788899999999999999999884   23455553

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=96.18  E-value=0.0031  Score=52.13  Aligned_cols=26  Identities=35%  Similarity=0.336  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHh
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      -.|.-+.|+|+||+||||++..|...
T Consensus        14 v~G~gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           14 IDKMGVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             ETTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred             ECCEEEEEEcCCCCCHHHHHHHHHHc
Confidence            46888999999999999999999873

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.17  E-value=0.0071  Score=57.19  Aligned_cols=43  Identities=21%  Similarity=0.101  Sum_probs=33.6

Q ss_pred             eecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315           97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (269)
Q Consensus        97 l~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~  142 (269)
                      +-++++.=+.|.||+|+|||+|+++|++.+..   ..+.+++..+.
T Consensus       238 ~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~---~fi~vs~s~L~  280 (467)
T 4b4t_H          238 LGIDPPKGILLYGPPGTGKTLCARAVANRTDA---TFIRVIGSELV  280 (467)
T ss_dssp             HTCCCCSEEEECSCTTSSHHHHHHHHHHHHTC---EEEEEEGGGGC
T ss_pred             CCCCCCCceEeeCCCCCcHHHHHHHHHhccCC---CeEEEEhHHhh
Confidence            34567788999999999999999999998853   35666665554

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=96.17  E-value=0.0037  Score=59.79  Aligned_cols=43  Identities=35%  Similarity=0.448  Sum_probs=33.9

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~  142 (269)
                      .++.+|+|+|++|+||||++..|+..+...|..+.+++.|..+
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r  141 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFR  141 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccc
Confidence            4677999999999999999999998886556667777776544

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=96.15  E-value=0.0027  Score=60.13  Aligned_cols=49  Identities=12%  Similarity=-0.008  Sum_probs=42.1

Q ss_pred             CCCcccCCCcceeeeee---ccccc--Cccccccccceeeccccccccccchhhhcccccccccccc
Q 024315           12 TRPAICSPSLAEVDFRT---SVKMS--GFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQN   73 (269)
Q Consensus        12 ~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~f~~idr~~~~~~~~~~~~~~~~~gagmi~~   73 (269)
                      .|..|.+||+|.|++.+   .+|+.  +|.+++.+|+|++.|  ++.           |+|+|||..
T Consensus       421 ~~~~l~~~~~~~v~~~~~~~~~p~~~~~~~~~~~~G~f~l~~--~~~-----------tv~~G~i~~  474 (483)
T 3p26_A          421 KIRHLGSKQRAFVEIELIEVKRWIPLLTAHENDRLGRVVLRK--DGR-----------TIAAGKISE  474 (483)
T ss_dssp             CCSCBCSSCEEEEEEEECSCSSCCEECCTTTCTTTTEEEEEE--TTE-----------EEEEEEEEE
T ss_pred             CccCcCCCCEEEEEEEECCCCCcEEEEecccCccCCCEEEEe--CCC-----------EEEEEEEEE
Confidence            34569999999999999   77888  999999999999955  454           999999965

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.15  E-value=0.0035  Score=51.75  Aligned_cols=25  Identities=28%  Similarity=0.501  Sum_probs=22.8

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          103 CVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      ..+.|.|++|+||||+++.+++.+.
T Consensus        46 ~~~ll~G~~G~GKT~l~~~~~~~~~   70 (250)
T 1njg_A           46 HAYLFSGTRGVGKTSIARLLAKGLN   70 (250)
T ss_dssp             SEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhc
Confidence            4789999999999999999998875

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=96.15  E-value=0.0038  Score=58.32  Aligned_cols=39  Identities=26%  Similarity=0.186  Sum_probs=29.9

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhhc-----------cCCccEEEECCeec
Q 024315          103 CVIWITGLSGSGKSTLACALSQALH-----------WRGKLTYILDGDNC  141 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l~-----------~~~~g~i~l~g~~~  141 (269)
                      -.++|+|+||+|||||++.|.+...           ++..+.+.++|..+
T Consensus       181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~  230 (439)
T 1mky_A          181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY  230 (439)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence            4799999999999999999998642           12346777787654

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=96.10  E-value=0.0031  Score=58.61  Aligned_cols=34  Identities=18%  Similarity=0.134  Sum_probs=30.4

Q ss_pred             CcceecCCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315           94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus        94 r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      +..+.+.+|+.++|+|++|+|||||++.|++.+.
T Consensus       166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~  199 (422)
T 3ice_A          166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA  199 (422)
T ss_dssp             HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred             eeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence            3467889999999999999999999999999774

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=96.09  E-value=0.0022  Score=51.94  Aligned_cols=22  Identities=41%  Similarity=0.557  Sum_probs=20.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHHh
Q 024315          104 VIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      .++|+|++|+|||||++.+.+.
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~   25 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKT   25 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999874

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=96.08  E-value=0.034  Score=51.89  Aligned_cols=47  Identities=19%  Similarity=0.135  Sum_probs=35.3

Q ss_pred             cCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc-CCccEEEECCe
Q 024315           93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW-RGKLTYILDGD  139 (269)
Q Consensus        93 ~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~-~~~g~i~l~g~  139 (269)
                      ++.---+++|+++.|.|++|+||||++..++..... .+..+++++..
T Consensus       191 D~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE  238 (444)
T 2q6t_A          191 DQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE  238 (444)
T ss_dssp             HHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred             hhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence            333333789999999999999999999999876643 34556676653

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=96.06  E-value=0.0038  Score=58.13  Aligned_cols=34  Identities=6%  Similarity=0.039  Sum_probs=26.6

Q ss_pred             ccEEEEeCChhHHHhcChhhHHHHHhcCcccccc
Q 024315          201 FIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFT  234 (269)
Q Consensus       201 ~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~  234 (269)
                      +..++++.|.+.|.+|..+++...+..|-+++..
T Consensus       189 ~~~i~L~~~R~~L~~RI~~Rvd~Ml~~GlleEv~  222 (409)
T 3eph_A          189 TLFLWLYSKPEPLFQRLDDRVDDMLERGALQEIK  222 (409)
T ss_dssp             EEEEEEECCHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred             eEEEEEeCCHHHHHHHHHHHHHHHHHCcHHHHHH
Confidence            4557889999999999999887777777665543

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=96.05  E-value=0.0068  Score=50.50  Aligned_cols=38  Identities=21%  Similarity=0.116  Sum_probs=30.2

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEE
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL  136 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l  136 (269)
                      .++|.+++++|+.||||||.+-.++..+...+..+.++
T Consensus         5 ~~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~   42 (191)
T 1xx6_A            5 KDHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVF   42 (191)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence            35789999999999999999988888775555555554

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=96.02  E-value=0.0045  Score=56.66  Aligned_cols=38  Identities=21%  Similarity=0.265  Sum_probs=28.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhcc----------CCccEEEECCeec
Q 024315          104 VIWITGLSGSGKSTLACALSQALHW----------RGKLTYILDGDNC  141 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~~----------~~~g~i~l~g~~~  141 (269)
                      +++|+|++|+|||||++.|.+....          +..+.+.++|..+
T Consensus       181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v  228 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI  228 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE
Confidence            4899999999999999999986531          2346777877554

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=95.99  E-value=0.0061  Score=50.84  Aligned_cols=33  Identities=42%  Similarity=0.482  Sum_probs=27.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhccCCccEEEE
Q 024315          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYIL  136 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l  136 (269)
                      +|+|=|.-||||||.++.|...|...|..++..
T Consensus         2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t   34 (197)
T 3hjn_A            2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK   34 (197)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence            578889999999999999999997666555544

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=95.93  E-value=0.0061  Score=52.42  Aligned_cols=38  Identities=21%  Similarity=0.132  Sum_probs=28.9

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECC
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG  138 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g  138 (269)
                      .+.-+.|.|++|+|||++++.|...+...+...+.++.
T Consensus        28 ~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~   65 (265)
T 2bjv_A           28 LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC   65 (265)
T ss_dssp             SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEG
T ss_pred             CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEec
Confidence            34568899999999999999999877533344566653

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=95.91  E-value=0.01  Score=52.93  Aligned_cols=37  Identities=24%  Similarity=0.323  Sum_probs=28.1

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCe
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD  139 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~  139 (269)
                      .++.-+.|.||+|+|||+++++++..+.   ...+.++..
T Consensus        49 ~~~~~vLl~GppGtGKT~la~aia~~~~---~~~~~v~~~   85 (322)
T 3eie_A           49 KPTSGILLYGPPGTGKSYLAKAVATEAN---STFFSVSSS   85 (322)
T ss_dssp             CCCCEEEEECSSSSCHHHHHHHHHHHHT---CEEEEEEHH
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHHC---CCEEEEchH
Confidence            4556789999999999999999999774   234445443

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=95.88  E-value=0.0038  Score=52.99  Aligned_cols=33  Identities=33%  Similarity=0.349  Sum_probs=26.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~  142 (269)
                      .|+|+|..||||||+++.|.. +.     ..++|.|.+.
T Consensus        11 ~iglTGgigsGKStv~~~l~~-~g-----~~vidaD~ia   43 (210)
T 4i1u_A           11 AIGLTGGIGSGKTTVADLFAA-RG-----ASLVDTDLIA   43 (210)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH-TT-----CEEEEHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH-CC-----CcEEECcHHH
Confidence            589999999999999999987 43     3467777643

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=95.87  E-value=0.013  Score=55.23  Aligned_cols=36  Identities=19%  Similarity=0.230  Sum_probs=27.8

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~  141 (269)
                      .-+.|+||+|+||||++++|++.+..   ..+.++...+
T Consensus        51 ~~iLl~GppGtGKT~lar~lA~~l~~---~~~~v~~~~~   86 (444)
T 1g41_A           51 KNILMIGPTGVGKTEIARRLAKLANA---PFIKVEATKF   86 (444)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTTC---CEEEEEGGGG
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHcCC---Cceeecchhh
Confidence            34789999999999999999998853   3555655443

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=95.84  E-value=0.0079  Score=49.91  Aligned_cols=27  Identities=26%  Similarity=0.276  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      .-..++|+|.+|+|||||++.|.+.+.
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~   55 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIG   55 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            445789999999999999999998764

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=95.83  E-value=0.0056  Score=52.96  Aligned_cols=29  Identities=21%  Similarity=0.337  Sum_probs=25.0

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      .++...+.|.||+|+||||++++++..+.
T Consensus        61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~   89 (272)
T 1d2n_A           61 RTPLVSVLLEGPPHSGKTALAAKIAEESN   89 (272)
T ss_dssp             SCSEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence            35566789999999999999999999764

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=95.83  E-value=0.0055  Score=54.87  Aligned_cols=40  Identities=23%  Similarity=0.258  Sum_probs=29.4

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~  141 (269)
                      .++.-+.|.||+|+|||+++++++..+.  +...+.+++.++
T Consensus        43 ~~~~~iLL~GppGtGKT~la~ala~~~~--~~~~~~i~~~~l   82 (322)
T 1xwi_A           43 TPWRGILLFGPPGTGKSYLAKAVATEAN--NSTFFSISSSDL   82 (322)
T ss_dssp             CCCSEEEEESSSSSCHHHHHHHHHHHTT--SCEEEEEECCSS
T ss_pred             CCCceEEEECCCCccHHHHHHHHHHHcC--CCcEEEEEhHHH
Confidence            4556788999999999999999999772  233445554433

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=95.83  E-value=0.0051  Score=57.08  Aligned_cols=28  Identities=32%  Similarity=0.307  Sum_probs=24.1

Q ss_pred             ecCCCeEEEEEcCCCChHHHHHHHHHHh
Q 024315           98 LQQKGCVIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus        98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      .+..+..++|+|+||+|||||+++|.+.
T Consensus        18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~   45 (396)
T 2ohf_A           18 RFGTSLKIGIVGLPNVGKSTFFNVLTNS   45 (396)
T ss_dssp             CSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred             hccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence            3456788999999999999999999976

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.83  E-value=0.0072  Score=53.89  Aligned_cols=36  Identities=31%  Similarity=0.383  Sum_probs=28.9

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHhhc-cCCccEEEEC
Q 024315          102 GCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILD  137 (269)
Q Consensus       102 g~~i~l~G~sGsGKSTla~~L~~~l~-~~~~g~i~l~  137 (269)
                      +.-+.|.||+|+|||+|+++|+..+. ..+...+++.
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~  188 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH  188 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence            67899999999999999999998876 5554454444

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=95.79  E-value=0.0054  Score=50.07  Aligned_cols=24  Identities=33%  Similarity=0.555  Sum_probs=21.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhc
Q 024315          104 VIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      .+.|.|++|+||||+++.++..+.
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~~~   63 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARDLF   63 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHh
Confidence            388999999999999999998764

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=95.78  E-value=0.0045  Score=52.50  Aligned_cols=26  Identities=23%  Similarity=0.252  Sum_probs=22.4

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          102 GCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       102 g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      .-.|+|+|++|+|||||++.|.+...
T Consensus        29 ~~~i~lvG~~g~GKStlin~l~g~~~   54 (239)
T 3lxx_A           29 QLRIVLVGKTGAGKSATGNSILGRKV   54 (239)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTSCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHcCCCc
Confidence            34689999999999999999998654

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=95.78  E-value=0.005  Score=55.75  Aligned_cols=27  Identities=37%  Similarity=0.490  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      ++..+.|.||+|+|||+++++|+..+.
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~~   76 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLLD   76 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            456788999999999999999999874

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.76  E-value=0.0054  Score=53.47  Aligned_cols=38  Identities=18%  Similarity=0.205  Sum_probs=29.1

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~  141 (269)
                      .+.-+.|.||+|+|||++++.++..+..   ..+.++....
T Consensus        49 ~~~~vll~G~~GtGKT~la~~la~~l~~---~~~~i~~~~~   86 (310)
T 1ofh_A           49 TPKNILMIGPTGVGKTEIARRLAKLANA---PFIKVEATKF   86 (310)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHTC---CEEEEEGGGG
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCC---CEEEEcchhc
Confidence            4557889999999999999999998842   3555655443

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=95.73  E-value=0.0087  Score=53.29  Aligned_cols=28  Identities=21%  Similarity=0.210  Sum_probs=25.2

Q ss_pred             ecCCCeEEEEEcCCCChHHHHHHHHHHh
Q 024315           98 LQQKGCVIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus        98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      -+++|.++.|.|++||||||++..++..
T Consensus        94 Gl~~g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           94 GLESQSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3578999999999999999999999864

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=95.73  E-value=0.007  Score=55.52  Aligned_cols=42  Identities=26%  Similarity=0.346  Sum_probs=34.5

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~  140 (269)
                      +++|.++.|.|++|+|||||+..++......+..+++++.+.
T Consensus        71 l~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~  112 (366)
T 1xp8_A           71 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH  112 (366)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             ccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence            578999999999999999999998876644556677887654

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=95.72  E-value=0.0059  Score=47.73  Aligned_cols=23  Identities=17%  Similarity=0.323  Sum_probs=20.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhh
Q 024315          104 VIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      .++++|++|+|||||++.|.+..
T Consensus         7 ~i~v~G~~~~GKssl~~~l~~~~   29 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYCKGI   29 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            57899999999999999998754

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=95.70  E-value=0.006  Score=51.37  Aligned_cols=39  Identities=23%  Similarity=0.342  Sum_probs=28.1

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHHh-hccCCccEEEEC
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQA-LHWRGKLTYILD  137 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~~-l~~~~~g~i~l~  137 (269)
                      +++|+++.|.|++|+||||++..++-. ....+...+++.
T Consensus        27 l~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s   66 (251)
T 2zts_A           27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT   66 (251)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred             CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence            478999999999999999999877643 222233445554

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=95.70  E-value=0.02  Score=51.83  Aligned_cols=39  Identities=13%  Similarity=0.189  Sum_probs=30.2

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~  141 (269)
                      .++.-+.|.||+|+||||++++|+..+.   ...+.++..++
T Consensus       115 ~~~~~vLl~GppGtGKT~la~aia~~~~---~~~~~i~~~~l  153 (357)
T 3d8b_A          115 GPPKGILLFGPPGTGKTLIGKCIASQSG---ATFFSISASSL  153 (357)
T ss_dssp             SCCSEEEEESSTTSSHHHHHHHHHHHTT---CEEEEEEGGGG
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHcC---CeEEEEehHHh
Confidence            5667899999999999999999998763   33555655444

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=95.67  E-value=0.0064  Score=49.53  Aligned_cols=32  Identities=28%  Similarity=0.432  Sum_probs=20.4

Q ss_pred             cCcceecCCCeEEEEEcCCCChHHHHHHHHHHh
Q 024315           93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus        93 ~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      +..++..++. .++++|++|+|||||++.+.+.
T Consensus        15 ~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           15 ASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             ---------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred             HHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence            3445554444 6789999999999999999873

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=95.66  E-value=0.0066  Score=47.21  Aligned_cols=24  Identities=25%  Similarity=0.387  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhh
Q 024315          103 CVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      -.++++|++|+|||||++.+.+.-
T Consensus         4 ~~i~v~G~~~~GKSsli~~l~~~~   27 (167)
T 1kao_A            4 YKVVVLGSGGVGKSALTVQFVTGT   27 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHHcCC
Confidence            358999999999999999998643

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=95.65  E-value=0.0067  Score=47.13  Aligned_cols=23  Identities=30%  Similarity=0.300  Sum_probs=20.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhh
Q 024315          104 VIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      .++++|++|+|||||++.+.+.-
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKKR   25 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998753

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=95.65  E-value=0.006  Score=47.28  Aligned_cols=23  Identities=35%  Similarity=0.459  Sum_probs=20.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhh
Q 024315          104 VIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      .++++|.+|+|||||++.|.+..
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~~   27 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQNH   27 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            48899999999999999998754

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=95.64  E-value=0.0072  Score=48.82  Aligned_cols=26  Identities=31%  Similarity=0.305  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      +.-.++++|++|+|||||++.|.+..
T Consensus        47 ~~~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           47 YQPSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34578999999999999999998754

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.64  E-value=0.0024  Score=55.00  Aligned_cols=24  Identities=33%  Similarity=0.520  Sum_probs=21.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhc
Q 024315          104 VIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      -+.|.||+|+||||++++|++.+.
T Consensus        46 ~vll~G~~GtGKT~la~~la~~~~   69 (268)
T 2r62_A           46 GVLLVGPPGTGKTLLAKAVAGEAH   69 (268)
T ss_dssp             CCCCBCSSCSSHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhC
Confidence            377999999999999999999875

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=95.62  E-value=0.0071  Score=54.40  Aligned_cols=25  Identities=44%  Similarity=0.458  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHh
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      .|.-++|+|+||+||||++..|.+.
T Consensus       143 ~g~~vl~~G~sG~GKSt~a~~l~~~  167 (314)
T 1ko7_A          143 YGVGVLITGDSGIGKSETALELIKR  167 (314)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence            6889999999999999999999874

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=95.60  E-value=0.0082  Score=47.54  Aligned_cols=26  Identities=31%  Similarity=0.391  Sum_probs=22.2

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHh
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      ++.-.++++|++|+|||||++.|.+.
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            34567899999999999999999864

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=95.59  E-value=0.007  Score=54.37  Aligned_cols=27  Identities=37%  Similarity=0.653  Sum_probs=24.6

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      +|..+.|.||+|+|||++++.++..+.
T Consensus        69 ~~~~vLl~GppGtGKT~la~~la~~l~   95 (368)
T 3uk6_A           69 AGRAVLIAGQPGTGKTAIAMGMAQALG   95 (368)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            457899999999999999999999885

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=95.58  E-value=0.0072  Score=47.03  Aligned_cols=24  Identities=25%  Similarity=0.315  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhh
Q 024315          103 CVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      -.++++|.+|+|||||++.|.+.-
T Consensus         5 ~~i~v~G~~~~GKssl~~~l~~~~   28 (168)
T 1u8z_A            5 HKVIMVGSGGVGKSALTLQFMYDE   28 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCc
Confidence            358899999999999999998653

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.58  E-value=0.0078  Score=54.18  Aligned_cols=28  Identities=18%  Similarity=0.292  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      ..+..+.|.||+|+||||+++.++..+.
T Consensus        43 ~~~~~vll~G~~G~GKT~la~~l~~~~~   70 (384)
T 2qby_B           43 EVKFSNLFLGLTGTGKTFVSKYIFNEIE   70 (384)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence            3466899999999999999999998773

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=95.57  E-value=0.0065  Score=56.89  Aligned_cols=37  Identities=16%  Similarity=0.138  Sum_probs=28.1

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHhhcc--CCccEEEECC
Q 024315          102 GCVIWITGLSGSGKSTLACALSQALHW--RGKLTYILDG  138 (269)
Q Consensus       102 g~~i~l~G~sGsGKSTla~~L~~~l~~--~~~g~i~l~g  138 (269)
                      +..+.|.||+|+|||||++++++.+..  ++...+.++.
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~  168 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS  168 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH
Confidence            467899999999999999999998742  2334555554

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=95.54  E-value=0.0062  Score=52.87  Aligned_cols=25  Identities=24%  Similarity=0.270  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          103 CVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      -.++|+|++|||||||++.|.+...
T Consensus         4 ~~i~lvG~~g~GKTTL~n~l~g~~~   28 (271)
T 3k53_A            4 KTVALVGNPNVGKTTIFNALTGLRQ   28 (271)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHTTCE
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCc
Confidence            3689999999999999999998653

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.53  E-value=0.0077  Score=47.06  Aligned_cols=23  Identities=17%  Similarity=0.228  Sum_probs=20.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhh
Q 024315          104 VIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      .++++|++|+|||||++.|.+.-
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998654

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=95.51  E-value=0.008  Score=47.04  Aligned_cols=24  Identities=21%  Similarity=0.340  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhh
Q 024315          103 CVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      -.++++|++|+|||||++.|.+.-
T Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            7 LKVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            358899999999999999998765

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=95.51  E-value=0.012  Score=59.26  Aligned_cols=41  Identities=20%  Similarity=0.352  Sum_probs=31.5

Q ss_pred             eecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee
Q 024315           97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (269)
Q Consensus        97 l~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~  140 (269)
                      +-++++.-+.|.||+|+|||+|++++++.+.   ...+.+++.+
T Consensus       233 ~g~~~p~GILL~GPPGTGKT~LAraiA~elg---~~~~~v~~~~  273 (806)
T 3cf2_A          233 IGVKPPRGILLYGPPGTGKTLIARAVANETG---AFFFLINGPE  273 (806)
T ss_dssp             CCCCCCCEEEEECCTTSCHHHHHHHHHTTTT---CEEEEEEHHH
T ss_pred             cCCCCCCeEEEECCCCCCHHHHHHHHHHHhC---CeEEEEEhHH
Confidence            3456777899999999999999999998764   3355565543

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=95.50  E-value=0.0073  Score=51.22  Aligned_cols=29  Identities=17%  Similarity=0.277  Sum_probs=24.4

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      +++...+.|.||+|+||||++.+|++.+.
T Consensus        55 iPkkn~ili~GPPGtGKTt~a~ala~~l~   83 (212)
T 1tue_A           55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQ   83 (212)
T ss_dssp             CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             CCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence            34445689999999999999999999873

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=95.50  E-value=0.008  Score=47.60  Aligned_cols=24  Identities=29%  Similarity=0.317  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhh
Q 024315          103 CVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      -.++++|++|+|||||++.|.+.-
T Consensus         9 ~~i~v~G~~~~GKSsli~~l~~~~   32 (182)
T 1ky3_A            9 LKVIILGDSGVGKTSLMHRYVNDK   32 (182)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCc
Confidence            458999999999999999998754

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=95.49  E-value=0.0073  Score=47.30  Aligned_cols=23  Identities=26%  Similarity=0.404  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHh
Q 024315          103 CVIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      -.++++|.+|+|||||++.|.+.
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            4 YRVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            35889999999999999999864

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=95.49  E-value=0.0081  Score=47.09  Aligned_cols=23  Identities=17%  Similarity=0.229  Sum_probs=20.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhh
Q 024315          104 VIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      .++++|++|+|||||++.+.+.-
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~~   30 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLVLRYCENK   30 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            58899999999999999998653

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=95.48  E-value=0.0071  Score=54.85  Aligned_cols=31  Identities=19%  Similarity=0.066  Sum_probs=23.2

Q ss_pred             ccCcceecCCCeEEEEEcCCCChHHHHHHHHHHh
Q 024315           92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus        92 ~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      ..+.++.++   .|+++|.+|||||||++.|.+.
T Consensus        27 l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~   57 (360)
T 3t34_A           27 LPTLWDSLP---AIAVVGGQSSGKSSVLESIVGK   57 (360)
T ss_dssp             C----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred             cccccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence            344445554   8899999999999999999994

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.48  E-value=0.0075  Score=53.61  Aligned_cols=23  Identities=30%  Similarity=0.495  Sum_probs=21.5

Q ss_pred             EEEEcCCCChHHHHHHHHHHhhc
Q 024315          105 IWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       105 i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      +.|.||+|+||||+++.+++.+.
T Consensus        61 ~ll~G~~G~GKT~la~~la~~l~   83 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTKELY   83 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            88999999999999999999874

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=95.47  E-value=0.0072  Score=56.46  Aligned_cols=48  Identities=10%  Similarity=0.110  Sum_probs=42.6

Q ss_pred             CCcccCCCcceeeeeeccccc--Cccccccccceeeccccccccccchhhhcccccccccccc
Q 024315           13 RPAICSPSLAEVDFRTSVKMS--GFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQN   73 (269)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~f~~idr~~~~~~~~~~~~~~~~~gagmi~~   73 (269)
                      |..|..||++.|.|.+.+|++  +|.+++.+|.|+++|.  +.           |+|+|||..
T Consensus       377 ~~~l~~g~~~~v~~~~~~p~~~~~~~~~~~~grf~lr~~--~~-----------tv~~G~i~~  426 (435)
T 1jny_A          377 PQFLKQGDVAIVKFKPIKPLCVEKYNEFPPLGRFAMRDM--GK-----------TVGVGIIVD  426 (435)
T ss_dssp             CSCBCTTCEEEEEEEESSCEECCCTTTSGGGTEEEEEET--TE-----------EEEEEEEEE
T ss_pred             ccccCCCCEEEEEEEECceEEEecCCcCCcCccEEEEEC--Ce-----------EEEEEEEee
Confidence            456888999999999999999  8999999999999996  33           999999864

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=95.46  E-value=0.0085  Score=47.40  Aligned_cols=23  Identities=26%  Similarity=0.302  Sum_probs=20.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhh
Q 024315          104 VIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      .++++|++|+|||||++.|.+.-
T Consensus         9 ~i~v~G~~~~GKSsli~~l~~~~   31 (177)
T 1wms_A            9 KVILLGDGGVGKSSLMNRYVTNK   31 (177)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            57899999999999999998654

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=95.45  E-value=0.0085  Score=46.74  Aligned_cols=23  Identities=30%  Similarity=0.505  Sum_probs=20.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhh
Q 024315          104 VIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      .++++|.+|+|||||++.|.+.-
T Consensus         5 ki~v~G~~~~GKssli~~l~~~~   27 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQGI   27 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            57899999999999999998743

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=95.44  E-value=0.0079  Score=47.09  Aligned_cols=23  Identities=35%  Similarity=0.410  Sum_probs=20.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhh
Q 024315          104 VIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      .++++|++|+|||||++.|.+.-
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFVEDK   27 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            47899999999999999998654

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=95.43  E-value=0.008  Score=54.61  Aligned_cols=36  Identities=31%  Similarity=0.376  Sum_probs=27.5

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCe
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD  139 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~  139 (269)
                      .+..+.|+||+|+||||+++.|+..+.   ...+.++..
T Consensus        71 ~~~~ill~Gp~GtGKT~la~~la~~l~---~~~~~~~~~  106 (376)
T 1um8_A           71 SKSNILLIGPTGSGKTLMAQTLAKHLD---IPIAISDAT  106 (376)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTT---CCEEEEEGG
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHhC---CCEEEecch
Confidence            445688999999999999999999874   234555443

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=95.43  E-value=0.0082  Score=56.52  Aligned_cols=48  Identities=17%  Similarity=0.099  Sum_probs=42.4

Q ss_pred             CCcccCCCcceeeeeeccccc--Cccccccccceeeccccccccccchhhhcccccccccccc
Q 024315           13 RPAICSPSLAEVDFRTSVKMS--GFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQN   73 (269)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~f~~idr~~~~~~~~~~~~~~~~~gagmi~~   73 (269)
                      |..|..||++.|.|.+.+|++  +|.+++.+|+|+++|.  +.           |+|+|||..
T Consensus       389 ~~~l~~g~~~~v~~~~~~p~~~~~~~~~~~~grf~lr~~--~~-----------tv~~G~v~~  438 (458)
T 1f60_A          389 PKFLKSGDAALVKFVPSKPMCVEAFSEYPPLGRFAVRDM--RQ-----------TVAVGVIKS  438 (458)
T ss_dssp             CSCBCTTCEEEEEEEESSCCCCCCTTTCGGGSEEEEEET--TE-----------EEEEEEEEE
T ss_pred             ccccCCCCEEEEEEEECCeEEEecCccCCCCCcEEEEEC--Ce-----------EEEEEEEEe
Confidence            456889999999999999998  9999999999999993  32           999999865

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=95.42  E-value=0.0072  Score=47.63  Aligned_cols=24  Identities=25%  Similarity=0.367  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhh
Q 024315          103 CVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      -.++|+|++|+|||||++.|.+.-
T Consensus         5 ~ki~i~G~~~vGKSsl~~~l~~~~   28 (175)
T 2nzj_A            5 YRVVLLGDPGVGKTSLASLFAGKQ   28 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCC-
T ss_pred             EEEEEECCCCccHHHHHHHHhcCC
Confidence            358999999999999999998654

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=95.42  E-value=0.012  Score=46.14  Aligned_cols=26  Identities=35%  Similarity=0.494  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      +.-.++++|++|+|||||++.|.+.-
T Consensus         6 ~~~~i~v~G~~~~GKssl~~~l~~~~   31 (171)
T 1upt_A            6 REMRILILGLDGAGKTTILYRLQVGE   31 (171)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCC
Confidence            44568999999999999999997643

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=95.39  E-value=0.009  Score=54.52  Aligned_cols=29  Identities=31%  Similarity=0.369  Sum_probs=23.3

Q ss_pred             cceecCCCeEEEEEcCCCChHHHHHHHHHH
Q 024315           95 QQLLQQKGCVIWITGLSGSGKSTLACALSQ  124 (269)
Q Consensus        95 ~sl~~~~g~~i~l~G~sGsGKSTla~~L~~  124 (269)
                      ..+...+ .+.+|+|+|||||||++.+|.=
T Consensus        19 ~~i~f~~-gl~vi~G~NGaGKT~ileAI~~   47 (371)
T 3auy_A           19 SRIKFEK-GIVAIIGENGSGKSSIFEAVFF   47 (371)
T ss_dssp             EEEECCS-EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEecCC-CeEEEECCCCCCHHHHHHHHHH
Confidence            4455444 4788999999999999999874

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=95.38  E-value=0.0086  Score=47.39  Aligned_cols=24  Identities=29%  Similarity=0.396  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhh
Q 024315          103 CVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      -.++++|.+|+|||||++.|.+.-
T Consensus        10 ~~i~v~G~~~~GKssli~~l~~~~   33 (181)
T 2fn4_A           10 HKLVVVGGGGVGKSALTIQFIQSY   33 (181)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCc
Confidence            358999999999999999998753

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=95.36  E-value=0.0089  Score=59.00  Aligned_cols=31  Identities=29%  Similarity=0.166  Sum_probs=26.3

Q ss_pred             eecCCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315           97 LLQQKGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus        97 l~~~~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      +.++++..++|+|++|+|||||++.|.+...
T Consensus         4 ~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~   34 (665)
T 2dy1_A            4 EGGAMIRTVALVGHAGSGKTTLTEALLYKTG   34 (665)
T ss_dssp             --CCCEEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CccCCCcEEEEECCCCChHHHHHHHHHHhcC
Confidence            4567899999999999999999999997654

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=95.36  E-value=0.0095  Score=46.50  Aligned_cols=22  Identities=27%  Similarity=0.365  Sum_probs=19.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHHh
Q 024315          104 VIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      .++++|.+|+|||||++.|.+.
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5789999999999999999864

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=95.34  E-value=0.0079  Score=47.21  Aligned_cols=22  Identities=41%  Similarity=0.524  Sum_probs=19.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHHh
Q 024315          104 VIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      .++++|++|+|||||++.+.+.
T Consensus         4 ki~ivG~~~~GKSsli~~l~~~   25 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFGGL   25 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            4789999999999999999753

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=95.34  E-value=0.016  Score=48.12  Aligned_cols=28  Identities=29%  Similarity=0.196  Sum_probs=24.0

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhcc
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALHW  128 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~  128 (269)
                      +...++|+|.+|+|||||++.|...++.
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~   64 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKD   64 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence            4567899999999999999999987653

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=95.33  E-value=0.0091  Score=54.19  Aligned_cols=28  Identities=32%  Similarity=0.389  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      .++.-+.|.||+|+|||+++++++..+.
T Consensus        82 ~~~~~iLL~GppGtGKT~la~ala~~~~  109 (355)
T 2qp9_X           82 KPTSGILLYGPPGTGKSYLAKAVATEAN  109 (355)
T ss_dssp             CCCCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence            4455688999999999999999999874

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=95.32  E-value=0.0099  Score=47.44  Aligned_cols=24  Identities=33%  Similarity=0.434  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhh
Q 024315          103 CVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      -.++++|++|+|||||++.|.+.-
T Consensus         5 ~ki~v~G~~~~GKSsli~~l~~~~   28 (189)
T 4dsu_A            5 YKLVVVGADGVGKSALTIQLIQNH   28 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCC
Confidence            358999999999999999998754

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=95.30  E-value=0.01  Score=52.73  Aligned_cols=26  Identities=35%  Similarity=0.381  Sum_probs=22.7

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          102 GCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       102 g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      ...+.|.||+|+||||+++.++..+.
T Consensus        55 ~~~vll~G~~GtGKT~la~~ia~~~~   80 (338)
T 3pfi_A           55 LDHILFSGPAGLGKTTLANIISYEMS   80 (338)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHhC
Confidence            34588999999999999999998764

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=95.30  E-value=0.0099  Score=47.51  Aligned_cols=24  Identities=21%  Similarity=0.270  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhh
Q 024315          103 CVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      -.++|+|++|+|||||++.|.+.-
T Consensus        12 ~ki~v~G~~~~GKSsli~~l~~~~   35 (195)
T 3bc1_A           12 IKFLALGDSGVGKTSVLYQYTDGK   35 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCC
Confidence            358999999999999999998743

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=95.29  E-value=0.022  Score=48.36  Aligned_cols=38  Identities=21%  Similarity=0.190  Sum_probs=30.8

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEE
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL  136 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l  136 (269)
                      -++|.+..++|+.||||||.+-.++..+...+..++++
T Consensus        25 ~~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~   62 (214)
T 2j9r_A           25 NQNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVF   62 (214)
T ss_dssp             CCSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence            46799999999999999999888887776555555555

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=95.24  E-value=0.015  Score=46.70  Aligned_cols=25  Identities=24%  Similarity=0.290  Sum_probs=21.8

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHhh
Q 024315          102 GCVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       102 g~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      .-.++++|++|+|||||++.|.+.-
T Consensus         7 ~~ki~v~G~~~~GKSsli~~l~~~~   31 (208)
T 3clv_A            7 SYKTVLLGESSVGKSSIVLRLTKDT   31 (208)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCc
Confidence            4468999999999999999998763

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=95.23  E-value=0.017  Score=54.27  Aligned_cols=43  Identities=9%  Similarity=0.091  Sum_probs=34.7

Q ss_pred             ecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee
Q 024315           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (269)
Q Consensus        98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~  140 (269)
                      -+++|+++.|.|++|+||||++..++...-..+..+.++....
T Consensus       193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEm  235 (444)
T 3bgw_A          193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM  235 (444)
T ss_dssp             SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCC
Confidence            3689999999999999999999999876644455677776543

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=95.21  E-value=0.011  Score=47.58  Aligned_cols=24  Identities=33%  Similarity=0.433  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhh
Q 024315          103 CVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      -.|+++|.+|+|||||++.|.+..
T Consensus        22 ~ki~vvG~~~~GKSsli~~l~~~~   45 (190)
T 3con_A           22 YKLVVVGAGGVGKSALTIQLIQNH   45 (190)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            468899999999999999998754

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=95.20  E-value=0.0067  Score=57.27  Aligned_cols=48  Identities=4%  Similarity=-0.071  Sum_probs=42.1

Q ss_pred             CCcccCCCcceeeeeeccccc--Cccccccccceeeccccccccccchhhhcccccccccccc
Q 024315           13 RPAICSPSLAEVDFRTSVKMS--GFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQN   73 (269)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~f~~idr~~~~~~~~~~~~~~~~~gagmi~~   73 (269)
                      |..|..||++.|.|.+.+|++  +|.+++.||+|+++|.  +.           |+|+|||..
T Consensus       415 ~~~l~~g~~~~v~l~~~~p~~~~~~~~~~~~grf~lrd~--~~-----------Tv~~G~i~~  464 (467)
T 1r5b_A          415 PMFATKGMKIIAELETQTPVCMERFEDYQYMGRFTLRDQ--GT-----------TVAVGKVVK  464 (467)
T ss_dssp             CSBCCTTCBCCEEEEEEEEEECCCTTTCHHHHEEEEECS--SS-----------CEEEEEEEE
T ss_pred             ccccCCCCEEEEEEEECcEEEEEEcCcCCCCccEEEEEC--Ce-----------EEEEEEEEE
Confidence            446889999999999999999  9999999999999997  32           899998853

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=95.20  E-value=0.0076  Score=51.13  Aligned_cols=26  Identities=27%  Similarity=0.391  Sum_probs=21.6

Q ss_pred             ecCCCeEEEEEcCCCChHHHHHHHHH
Q 024315           98 LQQKGCVIWITGLSGSGKSTLACALS  123 (269)
Q Consensus        98 ~~~~g~~i~l~G~sGsGKSTla~~L~  123 (269)
                      .+..|+.+.++|++||||||++..+.
T Consensus        72 ~i~~g~~~~i~g~TGsGKTt~~~~~~   97 (235)
T 3llm_A           72 AISQNSVVIIRGATGCGKTTQVPQFI   97 (235)
T ss_dssp             HHHHCSEEEEECCTTSSHHHHHHHHH
T ss_pred             HHhcCCEEEEEeCCCCCcHHhHHHHH
Confidence            34578999999999999999876654

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=95.19  E-value=0.011  Score=46.56  Aligned_cols=24  Identities=29%  Similarity=0.289  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhh
Q 024315          103 CVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      -.++++|.+|+|||||++.|.+.-
T Consensus        16 ~~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           16 FKYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            358899999999999999998754

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=95.19  E-value=0.011  Score=47.72  Aligned_cols=24  Identities=25%  Similarity=0.387  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhh
Q 024315          103 CVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      -.++|+|.+|+|||||++.|.+.-
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~~~   49 (193)
T 2oil_A           26 FKVVLIGESGVGKTNLLSRFTRNE   49 (193)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCC
Confidence            468999999999999999998754

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=95.19  E-value=0.011  Score=46.77  Aligned_cols=24  Identities=29%  Similarity=0.385  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhh
Q 024315          103 CVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      -.++++|++|+|||||++.|.+.-
T Consensus         7 ~ki~v~G~~~~GKssl~~~l~~~~   30 (178)
T 2hxs_A            7 LKIVVLGDGASGKTSLTTCFAQET   30 (178)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHGGG
T ss_pred             EEEEEECcCCCCHHHHHHHHHhCc
Confidence            358899999999999999998643

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=95.17  E-value=0.0083  Score=49.23  Aligned_cols=31  Identities=29%  Similarity=0.423  Sum_probs=24.2

Q ss_pred             cCcceecCCCeEEEEEcCCCChHHHHHHHHHH
Q 024315           93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQ  124 (269)
Q Consensus        93 ~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~  124 (269)
                      +..++..++. .++++|++|+|||||++.+.+
T Consensus        17 ~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           17 QFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             HHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred             HHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence            3445555555 478999999999999999975

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=95.17  E-value=0.012  Score=45.92  Aligned_cols=23  Identities=30%  Similarity=0.453  Sum_probs=20.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhh
Q 024315          104 VIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      .++++|.+|+|||||++.+.+.-
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~~   24 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLGE   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            37899999999999999997644

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=95.17  E-value=0.02  Score=53.52  Aligned_cols=39  Identities=23%  Similarity=0.278  Sum_probs=28.5

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~  140 (269)
                      .++.-+.|.||+|+|||+|+++++..+.  +...+.++..+
T Consensus       165 ~~~~~vLL~GppGtGKT~lA~aia~~~~--~~~~~~v~~~~  203 (444)
T 2zan_A          165 TPWRGILLFGPPGTGKSYLAKAVATEAN--NSTFFSISSSD  203 (444)
T ss_dssp             CCCSEEEEECSTTSSHHHHHHHHHHHCC--SSEEEEECCC-
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHcC--CCCEEEEeHHH
Confidence            4557789999999999999999999772  22344455433

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=95.16  E-value=0.012  Score=46.83  Aligned_cols=24  Identities=25%  Similarity=0.315  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhh
Q 024315          103 CVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      -.|+++|++|+|||||++.|.+.-
T Consensus        19 ~ki~v~G~~~~GKSsli~~l~~~~   42 (187)
T 2a9k_A           19 HKVIMVGSGGVGKSALTLQFMYDE   42 (187)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHhhCC
Confidence            458899999999999999998643

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=95.15  E-value=0.0097  Score=46.54  Aligned_cols=23  Identities=30%  Similarity=0.411  Sum_probs=19.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhh
Q 024315          104 VIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      .++++|.+|+|||||++.+.+..
T Consensus         4 ki~~vG~~~~GKSsli~~l~~~~   26 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGGVE   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCC-
T ss_pred             EEEEECCCCCCHHHHHHHHcCcc
Confidence            47899999999999999997543

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.15  E-value=0.011  Score=48.72  Aligned_cols=25  Identities=32%  Similarity=0.332  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          103 CVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      -.++|+|++|+|||||++.|.+..+
T Consensus        13 ~~i~~~G~~g~GKTsl~~~l~~~~~   37 (218)
T 1nrj_B           13 PSIIIAGPQNSGKTSLLTLLTTDSV   37 (218)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4688999999999999999998654

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=95.15  E-value=0.011  Score=46.65  Aligned_cols=24  Identities=17%  Similarity=0.171  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhh
Q 024315          103 CVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      -.++++|++|+|||||++.|.+.-
T Consensus        15 ~~i~v~G~~~~GKssli~~l~~~~   38 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFMYDS   38 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            358899999999999999998643

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.14  E-value=0.012  Score=46.65  Aligned_cols=25  Identities=24%  Similarity=0.375  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          103 CVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      -.++++|.+|+|||||++.|.+.-.
T Consensus        11 ~~i~v~G~~~~GKssli~~l~~~~~   35 (180)
T 2g6b_A           11 FKVMLVGDSGVGKTCLLVRFKDGAF   35 (180)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhCCC
Confidence            3589999999999999999987543

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=95.12  E-value=0.012  Score=46.62  Aligned_cols=24  Identities=25%  Similarity=0.361  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhh
Q 024315          103 CVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      -.++++|++|+|||||++.|.+.-
T Consensus        13 ~ki~v~G~~~~GKSsli~~l~~~~   36 (181)
T 2efe_B           13 AKLVLLGDVGAGKSSLVLRFVKDQ   36 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            358999999999999999998753

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=95.11  E-value=0.034  Score=50.78  Aligned_cols=39  Identities=18%  Similarity=0.249  Sum_probs=30.0

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~  141 (269)
                      .++.-+.|.||+|+|||+++++++..+.   ...+.++...+
T Consensus       146 ~~~~~vLL~GppGtGKT~la~aia~~~~---~~~~~v~~~~l  184 (389)
T 3vfd_A          146 APARGLLLFGPPGNGKTMLAKAVAAESN---ATFFNISAASL  184 (389)
T ss_dssp             CCCSEEEEESSTTSCHHHHHHHHHHHTT---CEEEEECSCCC
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHhhc---CcEEEeeHHHh
Confidence            3467899999999999999999998764   33556665444

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=95.11  E-value=0.013  Score=52.92  Aligned_cols=41  Identities=20%  Similarity=0.269  Sum_probs=30.8

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHHhhccC--CccEEEECCee
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQALHWR--GKLTYILDGDN  140 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~--~~g~i~l~g~~  140 (269)
                      +.+| ++.|.|++|+|||||+-.++......  +...+++++..
T Consensus        26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~   68 (333)
T 3io5_A           26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEF   68 (333)
T ss_dssp             BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred             CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            3678 89999999999999987776554332  45677888754

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=95.04  E-value=0.016  Score=46.76  Aligned_cols=25  Identities=28%  Similarity=0.210  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHh
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      ..-.++++|++|+|||||++.|.+.
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4456899999999999999999865

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=95.04  E-value=0.012  Score=46.53  Aligned_cols=22  Identities=36%  Similarity=0.487  Sum_probs=19.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHHh
Q 024315          104 VIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      .++++|++|+|||||++.|.+.
T Consensus        11 ~i~v~G~~~~GKssl~~~l~~~   32 (181)
T 3tw8_B           11 KLLIIGDSGVGKSSLLLRFADN   32 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHCSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999999754

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=95.03  E-value=0.0095  Score=47.68  Aligned_cols=23  Identities=39%  Similarity=0.413  Sum_probs=20.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhh
Q 024315          104 VIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      .++++|.+|+|||||++.+.+.-
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGKK   25 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCcC
Confidence            47899999999999999998754

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=95.02  E-value=0.012  Score=46.91  Aligned_cols=24  Identities=25%  Similarity=0.353  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhh
Q 024315          103 CVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      -.++++|++|+|||||++.|.+.-
T Consensus        11 ~ki~v~G~~~~GKSsli~~l~~~~   34 (186)
T 2bme_A           11 FKFLVIGNAGTGKSCLLHQFIEKK   34 (186)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            458899999999999999998654

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=95.00  E-value=0.013  Score=47.50  Aligned_cols=24  Identities=25%  Similarity=0.315  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhh
Q 024315          103 CVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      -.|+|+|++|+|||||++.|.+.-
T Consensus        15 ~ki~v~G~~~~GKSsli~~l~~~~   38 (206)
T 2bov_A           15 HKVIMVGSGGVGKSALTLQFMYDE   38 (206)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCC
Confidence            458999999999999999998653

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=94.99  E-value=0.014  Score=47.28  Aligned_cols=24  Identities=29%  Similarity=0.223  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhh
Q 024315          103 CVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      -.++|+|.+|+|||||++.+.+..
T Consensus        21 ~ki~ivG~~~vGKSsL~~~~~~~~   44 (184)
T 3ihw_A           21 LKVGIVGNLSSGKSALVHRYLTGT   44 (184)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Confidence            358999999999999998877654

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=94.99  E-value=0.014  Score=46.87  Aligned_cols=24  Identities=25%  Similarity=0.061  Sum_probs=21.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhc
Q 024315          104 VIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      .++|+|.+|+|||||++.|.+...
T Consensus        16 ki~vvG~~~~GKssL~~~l~~~~~   39 (198)
T 3t1o_A           16 KIVYYGPGLSGKTTNLKWIYSKVP   39 (198)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhhcc
Confidence            578999999999999999988654

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=94.99  E-value=0.018  Score=46.18  Aligned_cols=25  Identities=32%  Similarity=0.236  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHhh
Q 024315          102 GCVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       102 g~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      --.++++|.+|+|||||++.|.+.-
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           23 KGEVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             TCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCc
Confidence            3468899999999999999998753

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.98  E-value=0.023  Score=54.12  Aligned_cols=37  Identities=22%  Similarity=0.135  Sum_probs=28.7

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~  140 (269)
                      ....+.|.||+|+||||+++++++.+.   ...+.++..+
T Consensus        76 ~~~~lLL~GppGtGKTtla~~la~~l~---~~~i~in~s~  112 (516)
T 1sxj_A           76 VFRAAMLYGPPGIGKTTAAHLVAQELG---YDILEQNASD  112 (516)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHTT---CEEEEECTTS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcC---CCEEEEeCCC
Confidence            346889999999999999999999873   3455665433

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=94.96  E-value=0.017  Score=45.75  Aligned_cols=26  Identities=15%  Similarity=0.087  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      +.-.++++|.+|+|||||++.+.+.-
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~~~~~~   32 (182)
T 3bwd_D            7 RFIKCVTVGDGAVGKTCLLISYTSNT   32 (182)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCC
Confidence            34468899999999999999998643

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=94.96  E-value=0.011  Score=48.90  Aligned_cols=30  Identities=33%  Similarity=0.279  Sum_probs=23.1

Q ss_pred             EEEEcCCCChHHHHHHHHHHhhccCCccEEEECC
Q 024315          105 IWITGLSGSGKSTLACALSQALHWRGKLTYILDG  138 (269)
Q Consensus       105 i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g  138 (269)
                      +.|+|++||||||++..|+..    +...+++..
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~----~~~~~yiaT   31 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD----APQVLYIAT   31 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS----CSSEEEEEC
T ss_pred             EEEECCCCCcHHHHHHHHHhc----CCCeEEEec
Confidence            679999999999999999864    233555553

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=94.96  E-value=0.014  Score=47.44  Aligned_cols=25  Identities=28%  Similarity=0.243  Sum_probs=21.6

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHhh
Q 024315          102 GCVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       102 g~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      .-.++|+|.+|+|||||++.|.+.-
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~~   32 (207)
T 1vg8_A            8 LLKVIILGDSGVGKTSLMNQYVNKK   32 (207)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCC
Confidence            3468999999999999999998754

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=94.95  E-value=0.013  Score=47.05  Aligned_cols=24  Identities=29%  Similarity=0.480  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhh
Q 024315          103 CVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      -.++++|++|+|||||++.|.+.-
T Consensus         8 ~ki~v~G~~~vGKSsli~~l~~~~   31 (184)
T 1m7b_A            8 CKIVVVGDSQCGKTALLHVFAKDC   31 (184)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCC
Confidence            357899999999999999998754

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=94.95  E-value=0.015  Score=46.43  Aligned_cols=25  Identities=28%  Similarity=0.385  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHhh
Q 024315          102 GCVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       102 g~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      --.++|+|.+|+|||||++.|.+..
T Consensus        18 ~~ki~v~G~~~~GKSsl~~~l~~~~   42 (183)
T 3kkq_A           18 TYKLVVVGDGGVGKSALTIQFFQKI   42 (183)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCC
Confidence            3458899999999999999998654

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=94.94  E-value=0.015  Score=46.28  Aligned_cols=24  Identities=17%  Similarity=0.178  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhh
Q 024315          103 CVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      -.++++|.+|+|||||++.+.+.-
T Consensus         6 ~~i~~~G~~~~GKssl~~~l~~~~   29 (186)
T 1mh1_A            6 IKCVVVGDGAVGKTCLLISYTTNA   29 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcCC
Confidence            358899999999999999998643

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=94.93  E-value=0.016  Score=54.38  Aligned_cols=40  Identities=28%  Similarity=0.410  Sum_probs=29.1

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~  141 (269)
                      ++.-+.|.||+|+|||+++++|++.+... ...+.+++..+
T Consensus        62 ~~~~iLl~GppGtGKT~la~ala~~l~~~-~~~~~~~~~~~  101 (456)
T 2c9o_A           62 AGRAVLLAGPPGTGKTALALAIAQELGSK-VPFCPMVGSEV  101 (456)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHHHHCTT-SCEEEEEGGGG
T ss_pred             CCCeEEEECCCcCCHHHHHHHHHHHhCCC-ceEEEEeHHHH
Confidence            45568899999999999999999988521 23445554433

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=94.92  E-value=0.015  Score=46.90  Aligned_cols=24  Identities=17%  Similarity=0.263  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhh
Q 024315          103 CVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      -.++|+|.+|+|||||++.|.+.-
T Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~   46 (189)
T 2gf9_A           23 FKLLLIGNSSVGKTSFLFRYADDS   46 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            358999999999999999998754

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=94.91  E-value=0.012  Score=52.28  Aligned_cols=26  Identities=23%  Similarity=0.424  Sum_probs=23.3

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          102 GCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       102 g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      |.-+.|.||+|+|||++++.|+..+.
T Consensus        46 ~~~vll~G~pGtGKT~la~~la~~~~   71 (331)
T 2r44_A           46 GGHILLEGVPGLAKTLSVNTLAKTMD   71 (331)
T ss_dssp             TCCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            55788999999999999999999774

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=94.90  E-value=0.0064  Score=47.66  Aligned_cols=27  Identities=22%  Similarity=0.289  Sum_probs=22.1

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      +.+.-+.|.|++|+|||++++.|....
T Consensus        25 ~~~~~vll~G~~GtGKt~lA~~i~~~~   51 (143)
T 3co5_A           25 KRTSPVFLTGEAGSPFETVARYFHKNG   51 (143)
T ss_dssp             TCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred             CCCCcEEEECCCCccHHHHHHHHHHhC
Confidence            344558899999999999999987654

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=94.90  E-value=0.013  Score=51.34  Aligned_cols=23  Identities=26%  Similarity=0.303  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHh
Q 024315          103 CVIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      -.++|+|.+|+|||||++.|.+.
T Consensus         4 ~kI~lvG~~nvGKSTL~n~L~g~   26 (272)
T 3b1v_A            4 TEIALIGNPNSGKTSLFNLITGH   26 (272)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHCC
Confidence            46899999999999999999974

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=94.88  E-value=0.015  Score=46.76  Aligned_cols=23  Identities=30%  Similarity=0.401  Sum_probs=20.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhh
Q 024315          104 VIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      .++|+|++|+|||||++.|.+.-
T Consensus        18 ki~v~G~~~~GKSsli~~l~~~~   40 (196)
T 3tkl_A           18 KLLLIGDSGVGKSCLLLRFADDT   40 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            58999999999999999998754

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=94.88  E-value=0.017  Score=46.52  Aligned_cols=25  Identities=32%  Similarity=0.468  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHh
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      +.-.++++|++|+|||||++.|.+.
T Consensus        15 ~~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           15 QEVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcC
Confidence            3456899999999999999999764

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.88  E-value=0.014  Score=47.05  Aligned_cols=24  Identities=25%  Similarity=0.403  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHh
Q 024315          102 GCVIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       102 g~~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      .-.++|+|.+|+|||||++.|.+.
T Consensus         8 ~~ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A            8 DYRVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCcHHHHHHHHHcC
Confidence            346899999999999999999874

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=94.87  E-value=0.014  Score=52.84  Aligned_cols=27  Identities=33%  Similarity=0.481  Sum_probs=23.9

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHHh
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      +.+|.++.|.|++|+|||||+..++..
T Consensus       120 i~~gsviLI~GpPGsGKTtLAlqlA~~  146 (331)
T 2vhj_A          120 RYASGMVIVTGKGNSGKTPLVHALGEA  146 (331)
T ss_dssp             EEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred             CCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence            467788899999999999999999865

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=94.84  E-value=0.014  Score=53.46  Aligned_cols=23  Identities=48%  Similarity=0.534  Sum_probs=20.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhh
Q 024315          104 VIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      .++|+|++|+|||||+++|.+.-
T Consensus         3 ~v~IVG~pnvGKSTL~n~L~~~~   25 (368)
T 2dby_A            3 AVGIVGLPNVGKSTLFNALTRAN   25 (368)
T ss_dssp             SEEEECCSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            37899999999999999999863

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=94.84  E-value=0.012  Score=46.85  Aligned_cols=25  Identities=40%  Similarity=0.547  Sum_probs=21.4

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHH
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQ  124 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~  124 (269)
                      ++.-.++++|++|+|||||++.+.+
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            4556789999999999999998863

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=94.83  E-value=0.017  Score=46.60  Aligned_cols=24  Identities=25%  Similarity=0.292  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhh
Q 024315          103 CVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      -.++|+|.+|+|||||++.|.+.-
T Consensus        21 ~ki~v~G~~~~GKSsli~~l~~~~   44 (189)
T 1z06_A           21 FKIIVIGDSNVGKTCLTYRFCAGR   44 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcCC
Confidence            458999999999999999998643

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=94.80  E-value=0.015  Score=47.04  Aligned_cols=24  Identities=29%  Similarity=0.541  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhh
Q 024315          103 CVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      -.++|+|++|+|||||++.|.+.-
T Consensus        24 ~ki~vvG~~~~GKSsli~~l~~~~   47 (192)
T 2fg5_A           24 LKVCLLGDTGVGKSSIVCRFVQDH   47 (192)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHCC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCC
Confidence            358999999999999999998754

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=94.80  E-value=0.015  Score=54.65  Aligned_cols=25  Identities=28%  Similarity=0.415  Sum_probs=22.4

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          103 CVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      ..+.|.||+|+||||+++.|++.+.
T Consensus        51 ~~vLL~GppGtGKTtlAr~ia~~~~   75 (447)
T 3pvs_A           51 HSMILWGPPGTGKTTLAEVIARYAN   75 (447)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHhC
Confidence            3588999999999999999999874

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=94.76  E-value=0.012  Score=57.59  Aligned_cols=48  Identities=13%  Similarity=-0.009  Sum_probs=40.7

Q ss_pred             CCcccCCCcceeeeee---ccccc--Cccccccccceeeccccccccccchhhhcccccccccccc
Q 024315           13 RPAICSPSLAEVDFRT---SVKMS--GFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQN   73 (269)
Q Consensus        13 ~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~f~~idr~~~~~~~~~~~~~~~~~gagmi~~   73 (269)
                      |..|.+|++|.|.|.+   .+|++  +|.+++.+|+|++.|  ++.           |+|+|||..
T Consensus       556 ~~~l~~~d~a~v~~~~~~~~~pi~~e~~~~~~~~grf~lr~--~~~-----------Tva~G~i~~  608 (611)
T 3izq_1          556 IRHLGSKQRAFVEIELIEVKRWIPLLTAHENDRLGRVVLRK--DGR-----------TIAAGKISE  608 (611)
T ss_dssp             SCSSSSCCSEEEEEEESSCSSCBCCCCTTTCHHHHEEEEES--SSS-----------EEEEEEEEE
T ss_pred             ccccCCCCEEEEEEEECCCCCceEEeecccCCCCCcEEEEe--CCC-----------EEEEEEEEE
Confidence            4469999999999999   77887  999999999999954  343           999999864

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=94.76  E-value=0.016  Score=46.09  Aligned_cols=23  Identities=30%  Similarity=0.364  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHh
Q 024315          103 CVIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      -.++|+|.+|+|||||++.|.+.
T Consensus         7 ~ki~~~G~~~~GKSsli~~l~~~   29 (181)
T 3t5g_A            7 RKIAILGYRSVGKSSLTIQFVEG   29 (181)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECcCCCCHHHHHHHHHcC
Confidence            35889999999999999999843

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=94.75  E-value=0.022  Score=52.10  Aligned_cols=29  Identities=28%  Similarity=0.352  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhccC
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALHWR  129 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~  129 (269)
                      ++...+.|+|.+||||||+++.| +.++.+
T Consensus        31 ~~~~killlG~~~SGKST~~kq~-~i~~~~   59 (362)
T 1zcb_A           31 ARLVKILLLGAGESGKSTFLKQM-RIIHGQ   59 (362)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHH-HHHHSC
T ss_pred             cCccEEEEECCCCCcHHHHHHHH-HHHhCC
Confidence            45567899999999999999999 445444

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=94.71  E-value=0.018  Score=46.53  Aligned_cols=24  Identities=29%  Similarity=0.314  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhh
Q 024315          103 CVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      -.++|+|.+|+|||||++.|.+.-
T Consensus        22 ~ki~v~G~~~~GKSsli~~l~~~~   45 (191)
T 2a5j_A           22 FKYIIIGDTGVGKSCLLLQFTDKR   45 (191)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCC
Confidence            358899999999999999998654

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=94.71  E-value=0.018  Score=46.20  Aligned_cols=24  Identities=38%  Similarity=0.447  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhh
Q 024315          103 CVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      -.++|+|++|+|||||++.|.+.-
T Consensus        16 ~~i~v~G~~~~GKssli~~l~~~~   39 (195)
T 1x3s_A           16 LKILIIGESGVGKSSLLLRFTDDT   39 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            468999999999999999998754

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=94.71  E-value=0.016  Score=47.25  Aligned_cols=27  Identities=22%  Similarity=0.224  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      .+.-.++|+|.+|+|||||++.|.+.-
T Consensus        22 ~~~~ki~vvG~~~~GKSsli~~l~~~~   48 (201)
T 3oes_A           22 VRYRKVVILGYRCVGKTSLAHQFVEGE   48 (201)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCC
Confidence            345568999999999999999998754

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=94.71  E-value=0.024  Score=53.76  Aligned_cols=41  Identities=24%  Similarity=0.092  Sum_probs=33.3

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHHhhccC-CccEEEECCe
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQALHWR-GKLTYILDGD  139 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~-~~g~i~l~g~  139 (269)
                      +++|+++.|.|++|+||||++..++...-.. +..+++++..
T Consensus       239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E  280 (503)
T 1q57_A          239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE  280 (503)
T ss_dssp             CCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred             cCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence            6899999999999999999999998766433 5556677654

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=94.70  E-value=0.018  Score=45.70  Aligned_cols=24  Identities=25%  Similarity=0.211  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhh
Q 024315          103 CVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      -.++++|.+|+|||||++.+.+.-
T Consensus         8 ~ki~~vG~~~vGKTsli~~l~~~~   31 (178)
T 2iwr_A            8 LRLGVLGDARSGKSSLIHRFLTGS   31 (178)
T ss_dssp             EEEEEECCGGGCHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCC
Confidence            458999999999999999998753

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=94.69  E-value=0.017  Score=51.89  Aligned_cols=25  Identities=40%  Similarity=0.421  Sum_probs=21.9

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHH
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQ  124 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~  124 (269)
                      -.|.-+.|+|+||+||||++..|..
T Consensus       145 ~~g~gvli~G~sG~GKStlal~l~~  169 (312)
T 1knx_A          145 VFGVGVLLTGRSGIGKSECALDLIN  169 (312)
T ss_dssp             ETTEEEEEEESSSSSHHHHHHHHHT
T ss_pred             ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence            4678899999999999999988765

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=94.69  E-value=0.021  Score=51.04  Aligned_cols=26  Identities=27%  Similarity=0.464  Sum_probs=23.1

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          102 GCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       102 g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      +..+.|.||+|+||||+++.+++.+.
T Consensus        38 ~~~~ll~G~~G~GKT~la~~la~~l~   63 (373)
T 1jr3_A           38 HHAYLFSGTRGVGKTSIARLLAKGLN   63 (373)
T ss_dssp             CSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            34688999999999999999999875

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=94.68  E-value=0.012  Score=51.88  Aligned_cols=27  Identities=30%  Similarity=0.354  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      .+..+.|.|++|+||||+++.+...+.
T Consensus        37 ~~~~vll~G~~GtGKT~la~~i~~~~~   63 (324)
T 1hqc_A           37 PLEHLLLFGPPGLGKTTLAHVIAHELG   63 (324)
T ss_dssp             CCCCCEEECCTTCCCHHHHHHHHHHHT
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHhC
Confidence            445688999999999999999998774

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=94.68  E-value=0.022  Score=46.35  Aligned_cols=29  Identities=28%  Similarity=0.296  Sum_probs=22.1

Q ss_pred             ecCCCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315           98 LQQKGCVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus        98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      .-++.-.++|+|.+|+|||||++.|.+.-
T Consensus        24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~   52 (199)
T 2p5s_A           24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNE   52 (199)
T ss_dssp             ----CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred             CcCCCeEEEEECcCCCCHHHHHHHHHhCC
Confidence            33455678999999999999999998654

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=94.68  E-value=0.016  Score=47.12  Aligned_cols=23  Identities=26%  Similarity=0.320  Sum_probs=20.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhh
Q 024315          104 VIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      .++|+|++|+|||||++.|.+.-
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~~   32 (203)
T 1zbd_A           10 KILIIGNSSVGKTSFLFRYADDS   32 (203)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998654

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.67  E-value=0.017  Score=46.66  Aligned_cols=25  Identities=20%  Similarity=0.278  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          103 CVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      -.++|+|.+|+|||||++.|.+.-.
T Consensus        24 ~ki~v~G~~~~GKSsli~~l~~~~~   48 (191)
T 3dz8_A           24 FKLLIIGNSSVGKTSFLFRYADDTF   48 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             eEEEEECCCCcCHHHHHHHHhcCCC
Confidence            3589999999999999999987653

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=94.66  E-value=0.017  Score=51.20  Aligned_cols=38  Identities=26%  Similarity=0.315  Sum_probs=28.1

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEEC
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD  137 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~  137 (269)
                      +.+..+.|+|++|+|||++++.|.......+...+.++
T Consensus        23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~   60 (304)
T 1ojl_A           23 PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLN   60 (304)
T ss_dssp             STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEE
T ss_pred             CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEe
Confidence            45567889999999999999999986643333344454

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=94.64  E-value=0.019  Score=46.31  Aligned_cols=26  Identities=23%  Similarity=0.333  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      +.-.++|+|.+|+|||||++.|.+.-
T Consensus        21 ~~~ki~v~G~~~~GKSsli~~l~~~~   46 (188)
T 1zd9_A           21 EEMELTLVGLQYSGKTTFVNVIASGQ   46 (188)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CccEEEEECCCCCCHHHHHHHHHcCC
Confidence            34568999999999999999998643

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.64  E-value=0.025  Score=45.84  Aligned_cols=26  Identities=27%  Similarity=0.291  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      +.-.++++|.+|+|||||++.|.+.-
T Consensus        27 ~~~ki~v~G~~~vGKSsli~~l~~~~   52 (196)
T 2atv_A           27 AEVKLAIFGRAGVGKSALVVRFLTKR   52 (196)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCC
Confidence            34568999999999999999998753

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=94.61  E-value=0.019  Score=46.00  Aligned_cols=26  Identities=19%  Similarity=0.387  Sum_probs=21.7

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHh
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      ++.-.++++|++|+|||||++.+.+.
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~   41 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGE   41 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence            34567899999999999999999754

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=94.60  E-value=0.017  Score=50.05  Aligned_cols=23  Identities=35%  Similarity=0.362  Sum_probs=20.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhh
Q 024315          104 VIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      .++|+|.+|||||||++.|.+.-
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~~   25 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNAN   25 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            57899999999999999998863

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=94.59  E-value=0.018  Score=47.01  Aligned_cols=23  Identities=35%  Similarity=0.432  Sum_probs=20.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhh
Q 024315          104 VIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      .++|+|++|+|||||++.|.+.-
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~~   32 (206)
T 2bcg_Y           10 KLLLIGNSGVGKSCLLLRFSDDT   32 (206)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998654

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=94.57  E-value=0.02  Score=46.26  Aligned_cols=25  Identities=28%  Similarity=0.298  Sum_probs=21.7

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHhh
Q 024315          102 GCVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       102 g~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      .-.++++|.+|+|||||++.+.+.-
T Consensus        23 ~~ki~~vG~~~~GKSsl~~~l~~~~   47 (194)
T 3reg_A           23 ALKIVVVGDGAVGKTCLLLAFSKGE   47 (194)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eeEEEEECcCCCCHHHHHHHHhcCC
Confidence            3468999999999999999998754

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=94.57  E-value=0.02  Score=46.76  Aligned_cols=27  Identities=30%  Similarity=0.295  Sum_probs=21.7

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      ...-.++|+|++|+|||||++.|.+.-
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~~~~   44 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFVEDK   44 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCC
Confidence            344578999999999999999998643

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=94.56  E-value=0.037  Score=47.41  Aligned_cols=41  Identities=15%  Similarity=0.184  Sum_probs=31.7

Q ss_pred             CCCeE-EEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee
Q 024315          100 QKGCV-IWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (269)
Q Consensus       100 ~~g~~-i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~  140 (269)
                      +.|++ +.+.|++|+||||++-.++..+...|..+++++-|.
T Consensus         3 ~~g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~   44 (228)
T 2r8r_A            3 ARGRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET   44 (228)
T ss_dssp             CCCCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            35555 788899999999999999988866676666666553

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=94.56  E-value=0.019  Score=47.44  Aligned_cols=25  Identities=32%  Similarity=0.456  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          103 CVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      -.++|+|.+|+|||||++.|.+...
T Consensus        27 ~ki~lvG~~~vGKSsLi~~l~~~~~   51 (201)
T 2ew1_A           27 FKIVLIGNAGVGKTCLVRRFTQGLF   51 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSSC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhCCC
Confidence            3589999999999999999986543

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=94.52  E-value=0.019  Score=50.99  Aligned_cols=26  Identities=35%  Similarity=0.248  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      +.-.++|+|.+|+|||||++.|.+.-
T Consensus         9 ~~g~v~ivG~~nvGKSTLin~l~g~~   34 (308)
T 3iev_A            9 KVGYVAIVGKPNVGKSTLLNNLLGTK   34 (308)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            44578999999999999999998753

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=94.51  E-value=0.021  Score=48.79  Aligned_cols=24  Identities=25%  Similarity=0.387  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHh
Q 024315          102 GCVIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       102 g~~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      .-.|+|+|.+|+|||||++.|.+.
T Consensus        22 ~~~I~lvG~~g~GKStl~n~l~~~   45 (260)
T 2xtp_A           22 ELRIILVGKTGTGKSAAGNSILRK   45 (260)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHTS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCC
Confidence            456899999999999999999864

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=94.51  E-value=0.023  Score=45.62  Aligned_cols=26  Identities=27%  Similarity=0.442  Sum_probs=22.1

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHh
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      ++.-.++++|.+|+|||||++.|.+.
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~   39 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMN   39 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcC
Confidence            44567899999999999999999853

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=94.49  E-value=0.022  Score=46.02  Aligned_cols=25  Identities=28%  Similarity=0.333  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHhh
Q 024315          102 GCVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       102 g~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      .-.++|+|.+|+|||||++.+.+.-
T Consensus        21 ~~ki~vvG~~~vGKTsLi~~l~~~~   45 (187)
T 3c5c_A           21 EVNLAILGRRGAGKSALTVKFLTKR   45 (187)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             eEEEEEECCCCCcHHHHHHHHHhCC
Confidence            3468999999999999999988644

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=94.47  E-value=0.011  Score=52.52  Aligned_cols=24  Identities=38%  Similarity=0.428  Sum_probs=21.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhc
Q 024315          104 VIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      -+.|.|++|+|||++++.+...+.
T Consensus        47 ~vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           47 GVLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             eEEEECCCCccHHHHHHHHHHhCc
Confidence            388999999999999999999774

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=94.46  E-value=0.02  Score=50.84  Aligned_cols=22  Identities=36%  Similarity=0.367  Sum_probs=20.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHHh
Q 024315          104 VIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      .++|+|.+|+|||||++.|.+.
T Consensus         9 ~V~ivG~~nvGKSTLln~l~g~   30 (301)
T 1wf3_A            9 FVAIVGKPNVGKSTLLNNLLGV   30 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999875

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=94.46  E-value=0.022  Score=46.43  Aligned_cols=23  Identities=35%  Similarity=0.440  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHh
Q 024315          103 CVIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      -.++|+|.+|+|||||++.+.+.
T Consensus         7 ~kv~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            7 YRVVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            35899999999999999999863

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.46  E-value=0.021  Score=46.94  Aligned_cols=25  Identities=20%  Similarity=0.223  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHhh
Q 024315          102 GCVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       102 g~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      .-.|+++|.+|+|||||++.|.+.-
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~~~   49 (207)
T 2fv8_A           25 RKKLVVVGDGACGKTCLLIVFSKDE   49 (207)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred             CcEEEEECcCCCCHHHHHHHHhcCC
Confidence            3468999999999999999998743

>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*

Probab=94.46  E-value=0.024  Score=48.98  Aligned_cols=24  Identities=29%  Similarity=0.422  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhh
Q 024315          103 CVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      .+++|+|..||||||+++.|...+
T Consensus         2 ~~i~ltG~~~sGK~tv~~~l~~~~   25 (241)
T 1dek_A            2 KLIFLSGVKRSGKDTTADFIMSNY   25 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhc
Confidence            378999999999999999998864

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=94.43  E-value=0.017  Score=52.41  Aligned_cols=27  Identities=37%  Similarity=0.302  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      ...-.++++|++|+|||||++.|.+..
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~  191 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAK  191 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            345689999999999999999998754

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=94.43  E-value=0.021  Score=47.24  Aligned_cols=25  Identities=28%  Similarity=0.446  Sum_probs=21.8

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHhh
Q 024315          102 GCVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       102 g~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      .-.++|+|.+|+|||||++.|.+.-
T Consensus        28 ~~ki~vvG~~~vGKSsLi~~l~~~~   52 (205)
T 1gwn_A           28 KCKIVVVGDSQCGKTALLHVFAKDC   52 (205)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCC
Confidence            3468999999999999999998754

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=94.42  E-value=0.024  Score=51.96  Aligned_cols=24  Identities=50%  Similarity=0.551  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHh
Q 024315          102 GCVIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       102 g~~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      +..++|+|.+|+|||||+++|.+.
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~   25 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKA   25 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCC
Confidence            346899999999999999999983

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=94.40  E-value=0.038  Score=55.07  Aligned_cols=39  Identities=23%  Similarity=0.268  Sum_probs=31.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~  142 (269)
                      .+.|+||+|+|||+++++|+..+...+...+.++...+.
T Consensus       523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~  561 (758)
T 3pxi_A          523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYM  561 (758)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcc
Confidence            688999999999999999999886555566777654443

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=94.40  E-value=0.023  Score=49.64  Aligned_cols=24  Identities=38%  Similarity=0.534  Sum_probs=21.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhc
Q 024315          104 VIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      .+.|.||+|+||||+++.+++.+.
T Consensus        48 ~~ll~G~~G~GKT~la~~l~~~l~   71 (327)
T 1iqp_A           48 HLLFAGPPGVGKTTAALALARELF   71 (327)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHHHhc
Confidence            488999999999999999999874

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=94.39  E-value=0.025  Score=46.43  Aligned_cols=25  Identities=28%  Similarity=0.337  Sum_probs=21.1

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHhh
Q 024315          102 GCVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       102 g~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      .-.++++|.+|+|||||++.|.+..
T Consensus         7 ~~ki~vvG~~~~GKTsli~~l~~~~   31 (214)
T 2fh5_B            7 QRAVLFVGLCDSGKTLLFVRLLTGQ   31 (214)
T ss_dssp             -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3468899999999999999998754

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=94.35  E-value=0.033  Score=56.32  Aligned_cols=40  Identities=23%  Similarity=0.219  Sum_probs=32.6

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~  142 (269)
                      ..+.|+||+|+|||++++.|...++..+...+.++.....
T Consensus       589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~  628 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYM  628 (854)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhcc
Confidence            5788999999999999999999986555667788765443

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=94.35  E-value=0.018  Score=47.07  Aligned_cols=23  Identities=26%  Similarity=0.413  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHh
Q 024315          103 CVIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      -.|+|+|.+|+|||||++.|.+.
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           26 FKFLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHC-
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            46899999999999999999754

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=94.33  E-value=0.021  Score=49.59  Aligned_cols=21  Identities=43%  Similarity=0.509  Sum_probs=18.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHH
Q 024315          104 VIWITGLSGSGKSTLACALSQ  124 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~  124 (269)
                      .++|+|.+|+|||||++.|.+
T Consensus        10 ~I~vvG~~g~GKSTLin~L~~   30 (274)
T 3t5d_A           10 TLMVVGESGLGKSTLINSLFL   30 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999999754

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=94.32  E-value=0.012  Score=48.75  Aligned_cols=25  Identities=32%  Similarity=0.239  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHh
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      ..-.|+|+|.+|+|||||++.|.+.
T Consensus        28 ~~~~i~v~G~~~~GKSslin~l~~~   52 (223)
T 4dhe_A           28 VQPEIAFAGRSNAGKSTAINVLCNQ   52 (223)
T ss_dssp             CSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            3456899999999999999999875

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=94.32  E-value=0.018  Score=47.11  Aligned_cols=22  Identities=41%  Similarity=0.530  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCChHHHHHHHHHH
Q 024315          103 CVIWITGLSGSGKSTLACALSQ  124 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~  124 (269)
                      -.++|+|.+|+|||||++.+.+
T Consensus        24 ~ki~vvG~~~vGKSsLi~~l~~   45 (195)
T 3cbq_A           24 FKVMLVGESGVGKSTLAGTFGG   45 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHTCC
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            4689999999999999999964

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=94.31  E-value=0.025  Score=50.86  Aligned_cols=45  Identities=18%  Similarity=0.071  Sum_probs=34.2

Q ss_pred             eecCCCeEEEEEcCCCChHHHHHHHHHHhhccC-------CccEEEECCeec
Q 024315           97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWR-------GKLTYILDGDNC  141 (269)
Q Consensus        97 l~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~-------~~g~i~l~g~~~  141 (269)
                      +...++..+.|.||+|+|||++++.+++.+...       .-..+.+++..+
T Consensus        40 i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~   91 (318)
T 3te6_A           40 LMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALEL   91 (318)
T ss_dssp             HHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCC
T ss_pred             hcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEecccc
Confidence            345678888999999999999999999988521       124667776544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	269
d1m7ga_	208	c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (A	1e-58
d1x6va3	195	c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kin	1e-33
d1m8pa3	183	c.37.1.15 (A:391-573) ATP sulfurylase C-terminal d	5e-26
d1np6a_	170	c.37.1.10 (A:) Molybdopterin-guanine dinucleotide	9e-22
d1qhxa_	178	c.37.1.3 (A:) Chloramphenicol phosphotransferase {	5e-21
d1knqa_	171	c.37.1.17 (A:) Gluconate kinase {Escherichia coli	7e-21
d1bifa1	213	c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fruct	1e-20
d1zp6a1	176	c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {	5e-20
d1g8fa3	122	c.37.1.15 (A:390-511) ATP sulfurylase C-terminal d	1e-16
d2bdta1	176	c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B	1e-12
d1kaga_	169	c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia	1e-09
d1ly1a_	152	c.37.1.1 (A:) Polynucleotide kinase, kinase domain	2e-07
d1y63a_	174	c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishma	7e-07
d1khta_	190	c.37.1.1 (A:) Adenylate kinase {Archaeon Methanoco	4e-06
d1nksa_	194	c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobu	1e-05
d1yj5a2	172	c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' p	4e-05
d1xjca_	165	c.37.1.10 (A:) Molybdopterin-guanine dinucleotide	1e-04
d1ihua1	296	c.37.1.10 (A:1-296) Arsenite-translocating ATPase	1e-04
d1rkba_	173	c.37.1.1 (A:) Adenylate kinase {Human (Homo sapien	2e-04
d1ihua2	279	c.37.1.10 (A:308-586) Arsenite-translocating ATPas	3e-04
d1a7ja_	288	c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sph	4e-04
d1rz3a_	198	c.37.1.6 (A:) Hypothetical protein rbstp0775 {Baci	5e-04
d1uj2a_	213	c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Ho	7e-04
d1g3qa_	237	c.37.1.10 (A:) Cell division regulator MinD {Archa	0.001
d2i3ba1	189	c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57	0.001
d1viaa_	161	c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobact	0.001
d2vp4a1	197	c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fr	0.002
d1e6ca_	170	c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chr	0.002
d1cp2a_	269	c.37.1.10 (A:) Nitrogenase iron protein {Clostridi	0.003
d1w1wa_	427	c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac	0.003
d1jj7a_	251	c.37.1.12 (A:) Peptide transporter Tap1, C-termina	0.004

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Length = 208

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

 Score =  183 bits (466), Expect = 1e-58
 Identities = 98/179 (54%), Positives = 116/179 (64%), Gaps = 9/179 (5%)

Query: 79  STNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILD 137
           STNI +H +++ + +R +L  Q+G  IW+TGLS SGKSTLA  L   L   R    Y LD
Sbjct: 1   STNITFHASALTRSERTELRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 60

Query: 138 GDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLP 197
           GDN R GLN+DL F   DR ENIRRI EVAKLFAD+  I I   ISPYRKDRD  R +  
Sbjct: 61  GDNIRFGLNKDLGFSEADRNENIRRIAEVAKLFADSNSIAITSFISPYRKDRDTARQLHE 120

Query: 198 EG--------DFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEV 248
                      F+EV++DVP++V E RDPKGLYK AREG +K FTGI  PYE P N EV
Sbjct: 121 VATPGEETGLPFVEVYVDVPVEVAEQRDPKGLYKKAREGVIKEFTGISAPYEAPANPEV 179

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (297), Expect = 1e-33
 Identities = 84/166 (50%), Positives = 107/166 (64%), Gaps = 6/166 (3%)

Query: 89  VDKRDRQQLLQQ----KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG 144
           V +  R Q++      +GC +W+TGLSG+GK+T++ AL + L   G   Y LDGDN R G
Sbjct: 2   VSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQG 61

Query: 145 LNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEV 204
           LN++L F  EDR EN+RRI EVAKLFADAG++CI   ISPY +DR+  R +         
Sbjct: 62  LNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFF 121

Query: 205 FMDV--PLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEV 248
            + V  PL VCE RD KGLYK AR G++KGFTGID  YE P   E+
Sbjct: 122 EVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDSEYEKPEAPEL 167

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

 Score = 98.6 bits (244), Expect = 5e-26
 Identities = 62/152 (40%), Positives = 84/152 (55%), Gaps = 2/152 (1%)

Query: 99  QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYI-LDGDNCRHGLNRDLSFKAEDRV 157
             +G  I++TG   SGK  +A AL   L+ +G  +   L GD  RH L+ +L F  EDR 
Sbjct: 3   ATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRH 62

Query: 158 ENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRS-MLPEGDFIEVFMDVPLQVCEAR 216
            NI+RI  VA     AG   IA  I+PY + R   R  +   G F  V +  PL+ CE  
Sbjct: 63  TNIQRIAFVATELTRAGAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQS 122

Query: 217 DPKGLYKLAREGKVKGFTGIDDPYEPPLNCEV 248
           D +G+Y  AR G++KGFTG+DDPYE P   ++
Sbjct: 123 DKRGIYAAARRGEIKGFTGVDDPYETPEKADL 154

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

 Score = 87.0 bits (214), Expect = 9e-22
 Identities = 16/165 (9%), Positives = 46/165 (27%), Gaps = 7/165 (4%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRI 163
           ++     SG+GK+TL   L  AL  RG    ++   +    +++      E R     + 
Sbjct: 4   LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQT 63

Query: 164 GEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK 223
              ++                 +       +   +   +E F    +           ++
Sbjct: 64  IVASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAGHR 123

Query: 224 LAREGKVKGFTGIDDPYEPPLNCEVGVHVWYRFELAETWRITKWL 268
                  +    +       L+  +        ++ +   +  ++
Sbjct: 124 PEELVIDRHVIAVASDVPLNLDVAL-------LDINDVEGLADFV 161

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

 Score = 85.5 bits (210), Expect = 5e-21
 Identities = 26/158 (16%), Positives = 44/158 (27%), Gaps = 19/158 (12%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLT----------YILDGDNCRHGLNRDLSFKA 153
           +I + G S +GKS +   L   L                   +         + D     
Sbjct: 5   MIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSI 64

Query: 154 EDRVENIRR-IGEVAKLFADAGVICI-ACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQ 211
                 +     E     A AG   I   +       ++  RS + + D + V +     
Sbjct: 65  GPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGA 124

Query: 212 VCEARDPKGLYKLAREGKVKGFTGID-DPYEPPLNCEV 248
           V E R+       AR  +V G            +  +V
Sbjct: 125 VAEGRE------TARGDRVAGMAAKQAYVVHEGVEYDV 156

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

 Score = 84.7 bits (208), Expect = 7e-21
 Identities = 28/157 (17%), Positives = 53/157 (33%), Gaps = 11/157 (7%)

Query: 99  QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE 158
                +  + G+SGSGKS +A  ++  LH        L        +        +DR  
Sbjct: 3   NHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKP 62

Query: 159 NIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDP 218
            ++ + + A        + +    +  +  RD  R   P  +   +++     V E+R  
Sbjct: 63  WLQALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNP--NLSFIYLKGDFDVIESR-- 118

Query: 219 KGLYKLAREGKVKGFTGID---DPYEPPLNCEVGVHV 252
                 AR+G       +    +  + P   E  V V
Sbjct: 119 ----LKARKGHFFKTQMLVTQFETLQEPGADETDVLV 151

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 213

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 85.4 bits (210), Expect = 1e-20
 Identities = 19/175 (10%), Positives = 53/175 (30%), Gaps = 32/175 (18%)

Query: 103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRR 162
            +I + GL   GK+ ++  L++ L++ G  T   +    R  + +          +N   
Sbjct: 3   TLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEG 62

Query: 163 IGEVAK------------LFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDV-- 208
           +    +            L  + G + +    +  R+ R    +   +  +   F++   
Sbjct: 63  LKIRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESIC 122

Query: 209 ------------------PLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLN 245
                                  ++ +    +    E     +  +D+  +  L+
Sbjct: 123 VDPEVIAANIVQVKLGSPDYVNRDSDEATEDFMRRIECYENSYESLDEEQDRDLS 177

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 82.7 bits (203), Expect = 5e-20
 Identities = 23/147 (15%), Positives = 44/147 (29%), Gaps = 9/147 (6%)

Query: 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD-----LSFKAED 155
            G ++ ++G  GSGKST+A AL+               D+    +        L    + 
Sbjct: 3   GGNILLLSGHPGSGKSTIAEALANLPGVP---KVHFHSDDLWGYIKHGRIDPWLPQSHQQ 59

Query: 156 RVENIRRIGEVAKLFADAGVICIAC-LISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCE 214
               ++   +VA  +A  G   I   ++ P         +       +       ++ C 
Sbjct: 60  NRMIMQIAADVAGRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCL 119

Query: 215 ARDPKGLYKLAREGKVKGFTGIDDPYE 241
            R    L        +         +E
Sbjct: 120 DRGGDSLSDPLVVADLHSQFADLGAFE 146

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 122

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.1 bits (177), Expect = 1e-16
 Identities = 16/144 (11%), Positives = 34/144 (23%), Gaps = 52/144 (36%)

Query: 100 QKGCVIWITGLSGSGKSTLACAL-SQALHWRGKLTY-ILDGDNCRHGLNRDLSFKAEDRV 157
           ++G  I +       +  L+ AL S  L + G   Y I + +                  
Sbjct: 4   KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHN------------------ 45

Query: 158 ENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARD 217
            N   +  + + F  +                         G  + +             
Sbjct: 46  -NKTELLSLIQDFIGS-------------------------GSGLIIPDQWEDDKDSVVG 79

Query: 218 PKGLYKLAREGKVKGFTGIDDPYE 241
            + +Y       +   +  D   E
Sbjct: 80  KQNVY------LLDTSSSADIQLE 97

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

 Score = 62.7 bits (151), Expect = 1e-12
 Identities = 20/122 (16%), Positives = 39/122 (31%), Gaps = 10/122 (8%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE---NI 160
           +  ITG +G GKST    L+  L      +  ++GD   H +        E         
Sbjct: 4   LYIITGPAGVGKSTTCKRLAAQLDN----SAYIEGDIINHMVVGGYRPPWESDELLALTW 59

Query: 161 RRIGEVAKLFADAG---VICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARD 217
           + I ++   F  A    V+                ++ + + +   + +    +    RD
Sbjct: 60  KNITDLTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRD 119

Query: 218 PK 219
             
Sbjct: 120 AL 121

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

 Score = 53.6 bits (127), Expect = 1e-09
 Identities = 20/137 (14%), Positives = 43/137 (31%), Gaps = 5/137 (3%)

Query: 105 IWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIG 164
           I++ G  G+GKST+   L+Q L+      +             D+ +  +   E   R  
Sbjct: 5   IFLVGPMGAGKSTIGRQLAQQLNME----FYDSDQEIEKRTGADVGWVFDLEGEEGFRDR 60

Query: 165 EVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL 224
           E   +        I              R+ L     + V+++  ++   AR  +   + 
Sbjct: 61  EEKVINELTEKQGIVLATGGGSVKSRETRNRLSA-RGVVVYLETTIEKQLARTQRDKKRP 119

Query: 225 AREGKVKGFTGIDDPYE 241
               +      ++    
Sbjct: 120 LLHVETPPREVLEALAN 136

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Length = 152

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

 Score = 47.0 bits (110), Expect = 2e-07
 Identities = 22/126 (17%), Positives = 35/126 (27%), Gaps = 14/126 (11%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSF--------KAED 155
           +I   G  GSGKST A    +    +    Y ++ D+ R  +              K   
Sbjct: 4   IILTIGCPGSGKSTWA----REFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGI 59

Query: 156 RVENIRRIGEVAKLFADAGVICIACLISPYRKDRDA--CRSMLPEGDFIEVFMDVPLQVC 213
                    +      D+    I    +   + R A    +            DVP    
Sbjct: 60  VTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTEL 119

Query: 214 EARDPK 219
             R+ K
Sbjct: 120 VKRNSK 125

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

 Score = 46.2 bits (108), Expect = 7e-07
 Identities = 20/120 (16%), Positives = 42/120 (35%), Gaps = 11/120 (9%)

Query: 99  QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLT--YILDGDNCRHGLNRDLSFKAEDR 156
           Q KG  I ITG  G+GK+++A  ++  L     L    ++  ++     + +L     + 
Sbjct: 2   QPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTHIIEE 61

Query: 157 VENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEAR 216
            +  R +  +  +    G   +         D  +          + V +    +V   R
Sbjct: 62  KDEDRLLDFMEPIMVSRGNHVV---------DYHSSELFPERWFHMVVVLHTSTEVLFER 112

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

 Score = 43.8 bits (102), Expect = 4e-06
 Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 1/58 (1%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILD-GDNCRHGLNRDLSFKAEDRVENI 160
           V+ +TG+ G G +T +      L   G    ++  G         +      D++  +
Sbjct: 3   VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKM 60

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

 Score = 42.7 bits (99), Expect = 1e-05
 Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 14/89 (15%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILD-GDNCRHGLNRDLSFKAE-------- 154
           +  +TG+ G GKST+   + + L  +G    I++ GD       +    K          
Sbjct: 3   IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSV 62

Query: 155 -----DRVENIRRIGEVAKLFADAGVICI 178
                 +++  + I E A+   +  +   
Sbjct: 63  EKQKKLQIDAAKGIAEEARAGGEGYLFID 91

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.0 bits (95), Expect = 4e-05
 Identities = 18/157 (11%), Positives = 32/157 (20%), Gaps = 21/157 (13%)

Query: 93  DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFK 152
           +   LL     V+   G  G+GKST       +  +     ++                 
Sbjct: 5   ESSSLLSPNPEVVVAVGFPGAGKSTFIQEHLVSAGY----VHVNRDTLGSWQRCVSSCQA 60

Query: 153 AEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQV 212
           A               L     V+          + R    +               ++ 
Sbjct: 61  A---------------LRQGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQ 105

Query: 213 CEARDPKGLYKLAREGKV--KGFTGIDDPYEPPLNCE 247
               +            V           +EPP   E
Sbjct: 106 ARHNNRFREMTDPSHAPVSDMVMFSYRKQFEPPTLAE 142

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 39.4 bits (91), Expect = 1e-04
 Identities = 26/166 (15%), Positives = 42/166 (25%), Gaps = 11/166 (6%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRI 163
           V  + G   SGK+TL      A    G     +      HG         +         
Sbjct: 3   VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG--HGGEPARPEGVDSVRHERAGA 60

Query: 164 GEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQ-VCEARDPKGLY 222
              A        + +   +            +  +   +E +       V   R  +   
Sbjct: 61  VATAVEGDGLLQLHLRRPLWRLDDVLALYAPLRLDLVLVEGYKQERHPKVVLVRSEEDWA 120

Query: 223 KLAREGKVKGFTGIDDPYEPPLNCEVGVHVWYRFELAETWRITKWL 268
            L     ++      +P E PL   V       F LA+      WL
Sbjct: 121 SLQHLANIRAVIA-WEPLEGPLAHPV-------FSLADDDEYIPWL 158

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} Length = 296

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

 Score = 40.4 bits (93), Expect = 1e-04
 Identities = 14/44 (31%), Positives = 24/44 (54%)

Query: 96  QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139
           Q LQ     ++ TG  G GK++++CA +  L  +GK   ++  D
Sbjct: 2   QFLQNIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD 45

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 2e-04
 Identities = 16/112 (14%), Positives = 27/112 (24%), Gaps = 12/112 (10%)

Query: 105 IWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIG 164
           I +TG  G GK+TL   L+     +      ++  +          +  E     +    
Sbjct: 7   ILLTGTPGVGKTTLGKELASKSGLK-----YINVGDLAREEQLYDGYDEEYDCPILDEDR 61

Query: 165 EVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEAR 216
            V         +           D   C         I   +     V   R
Sbjct: 62  VVD-------ELDNQMREGGVIVDYHGCDFFPERWFHIVFVLRTDTNVLYER 106

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} Length = 279

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

 Score = 39.2 bits (90), Expect = 3e-04
 Identities = 12/50 (24%), Positives = 23/50 (46%)

Query: 94  RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH 143
              + + +  +I + G  G GK+T+A A++  L   G   ++   D   H
Sbjct: 12  VDDIARNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAAH 61

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} Length = 288

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

 Score = 38.8 bits (90), Expect = 4e-04
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN----CRHGLNRDLSFKAEDRVEN 159
           +I +TG SG+G ST+     Q     G     ++GD      R  +  +L  +       
Sbjct: 6   IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAAGDAT 65

Query: 160 I 160
            
Sbjct: 66  F 66

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Length = 198

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 37.8 bits (86), Expect = 5e-04
 Identities = 24/115 (20%), Positives = 37/115 (32%), Gaps = 11/115 (9%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRI 163
           V+ I GLS SGK+TLA  LSQ L  +G    +   D+              +R +     
Sbjct: 24  VLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIV-----------ERAKRYHTG 72

Query: 164 GEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDP 218
            E    +              +R+ + + +  LP  D                D 
Sbjct: 73  NEEWFEYYYLQWDVEWLTHQLFRQLKASHQLTLPFYDHETDTHSKRTVYLSDSDM 127

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 7e-04
 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 5/66 (7%)

Query: 104 VIWITGLSGSGKSTLACALSQAL-----HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE 158
           +I ++G + SGKS++   + Q L      +R K   IL  D+    L  +   KA     
Sbjct: 4   LIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQF 63

Query: 159 NIRRIG 164
           N     
Sbjct: 64  NFDHPD 69

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 237

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 37.4 bits (85), Expect = 0.001
 Identities = 25/96 (26%), Positives = 35/96 (36%), Gaps = 1/96 (1%)

Query: 104 VIWIT-GLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRR 162
           +I I  G  G+GK+T+   LS AL  RG+    +DGD     L+  L     D   +   
Sbjct: 4   IISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSLVLGVDDPDVTLHDVL 63

Query: 163 IGEVAKLFADAGVICIACLISPYRKDRDACRSMLPE 198
            GE     A          + P   D +      P 
Sbjct: 64  AGEANVEDAIYMTQFDNVYVLPGAVDWEHVLKADPR 99

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 13/44 (29%), Positives = 19/44 (43%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNR 147
            +++TG  G GK+TL    S+ L   G        +  R G  R
Sbjct: 3   HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRR 46

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

 Score = 36.4 bits (83), Expect = 0.001
 Identities = 13/25 (52%), Positives = 15/25 (60%)

Query: 105 IWITGLSGSGKSTLACALSQALHWR 129
           I   G  GSGKSTLA AL++ L   
Sbjct: 3   IVFIGFMGSGKSTLARALAKDLDLV 27

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 197

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 11/51 (21%), Positives = 20/51 (39%)

Query: 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSF 151
           +   + I G  GSGK+T      +  +    LT  ++     +G+N     
Sbjct: 8   QPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGVNLLELM 58

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

 Score = 35.7 bits (81), Expect = 0.002
 Identities = 8/25 (32%), Positives = 15/25 (60%)

Query: 105 IWITGLSGSGKSTLACALSQALHWR 129
           I++ G  G G +T+   L++AL + 
Sbjct: 5   IFMVGARGCGMTTVGRELARALGYE 29

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} Length = 269

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

 Score = 36.1 bits (82), Expect = 0.003
 Identities = 13/36 (36%), Positives = 17/36 (47%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139
            + I G  G GKST    L+  LH  GK   ++  D
Sbjct: 3   QVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCD 38

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.6 bits (83), Expect = 0.003
 Identities = 20/103 (19%), Positives = 33/103 (32%), Gaps = 8/103 (7%)

Query: 107 ITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEV 166
           I G +GSGKS +  A+S  L  R          + R  + +DL ++     EN       
Sbjct: 30  IIGPNGSGKSNMMDAISFVLGVRSN--------HLRSNILKDLIYRGVLNDENSDDYDNE 81

Query: 167 AKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVP 209
               ++     +        K  +  R +   GD         
Sbjct: 82  GAASSNPQSAYVKAFYQKGNKLVELMRIISRNGDTSYKIDGKT 124

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (81), Expect = 0.004
 Identities = 24/110 (21%), Positives = 38/110 (34%), Gaps = 10/110 (9%)

Query: 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVEN 159
           + G V  + G +GSGKST+A  L   L+       +LDG       +R L          
Sbjct: 38  RPGEVTALVGPNGSGKSTVAALLQN-LYQPTGGQLLLDGKPLPQYEHRYLH-------RQ 89

Query: 160 IRRIGEVAKLFAD--AGVICIACLISPYRKDRDACRSMLPEGDFIEVFMD 207
           +  +G+  ++F       I       P  ++  A         FI     
Sbjct: 90  VAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQ 139

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	269
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	99.96
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.74
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	99.74
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.74
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.73
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.73
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.72
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.71
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	99.71
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.69
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.69
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.68
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.68
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.67
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.67
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.66
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.66
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.65
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.63
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.63
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.6
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	99.54
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	99.5
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.47
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	99.46
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.44
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	99.27
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	99.25
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	99.22
d1zunb2	105	Sulfate adenylate transferase subunit cysN/C, EF-T	99.03
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	98.98
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	98.98
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	98.73
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	98.66
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	98.66
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	98.64
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	98.62
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	98.4
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	98.38
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	98.36
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	98.33
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	98.3
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	98.25
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.2
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	98.17
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	98.11
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	98.1
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	98.06
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.95
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.88
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.84
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.84
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.8
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.78
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.77
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.75
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.74
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.73
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.7
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.69
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.61
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.59
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.57
d1okkd2	207	GTPase domain of the signal recognition particle r	97.56
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.54
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.54
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.43
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.35
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.35
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.33
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	97.3
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.27
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.25
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	97.22
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	97.18
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.14
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.1
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	97.07
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.06
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.03
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.02
d1jnya2	107	Elongation factor eEF-1alpha, C-terminal domain {A	96.99
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.99
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.91
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.91
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.88
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.88
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.83
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.82
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.77
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	96.76
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.75
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.74
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.69
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.68
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.65
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.65
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.62
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.6
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.57
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.56
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	96.55
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	96.53
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.49
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	96.49
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.45
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.43
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.43
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	96.42
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	96.39
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.38
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	96.35
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.33
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.3
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	96.29
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	96.23
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	96.23
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	96.21
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	96.21
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	96.2
d1nrjb_	209	Signal recognition particle receptor beta-subunit	96.18
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.18
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	96.17
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	96.15
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.13
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	96.1
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.06
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.06
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	96.05
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	96.02
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.99
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	95.99
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.96
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	95.94
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	95.93
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.93
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	95.93
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.92
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.9
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	95.9
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.89
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	95.89
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	95.85
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.84
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	95.82
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	95.81
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.73
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.73
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	95.67
d2fh5b1	207	Signal recognition particle receptor beta-subunit	95.59
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	95.55
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	95.54
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	95.51
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	95.49
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	95.46
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.43
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	95.37
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.26
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.25
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	95.22
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	95.22
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	95.18
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	95.07
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.06
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	95.05
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	95.05
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	94.95
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	94.85
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	94.8
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	94.75
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	94.74
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	94.7
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	94.69
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	94.68
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	94.65
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	94.65
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	94.64
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	94.64
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	94.63
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	94.6
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	94.5
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	94.5
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	94.5
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	94.5
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	94.49
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	94.43
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	94.42
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	94.38
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	94.38
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	94.37
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	94.34
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	94.34
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	94.33
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	94.24
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	94.24
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	94.21
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	94.21
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	94.2
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	94.14
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	94.14
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	94.02
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	94.02
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	93.99
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	93.96
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	93.93
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	93.88
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	93.88
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	93.83
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	93.8
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	93.71
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	93.65
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	93.58
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	93.55
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	93.52
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	93.49
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	93.46
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	93.45
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	93.45
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	93.44
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	93.39
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	93.27
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	93.21
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	93.19
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	93.13
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	93.09
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	93.08
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	93.06
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	93.0
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	92.82
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	92.78
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	92.68
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	92.65
d1xpua3	289	Transcription termination factor Rho, ATPase domai	92.65
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	92.4
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	92.21
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	92.12
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	92.03
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	91.96
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	91.56
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	91.47
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	91.47
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	91.43
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	91.35
d1f60a2	107	Elongation factor eEF-1alpha, C-terminal domain {B	91.09
d1tuea_	205	Replication protein E1 helicase domain {Human papi	91.08
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	91.06
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	91.0
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	90.75
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	90.72
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	90.65
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	90.57
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	90.38
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	90.31
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	90.15
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	90.1
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	89.98
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	89.93
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	89.79
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	89.47
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	89.36
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	89.33
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	89.18
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	89.0
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	88.79
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	88.67
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	87.96
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	87.84
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	87.78
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	87.68
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	85.96
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	85.29
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	84.98
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	84.8
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	84.56
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	84.41
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	83.96
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	82.9
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	82.05
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	80.16
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	80.04

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=99.96  E-value=5.6e-30  Score=218.30  Aligned_cols=188  Identities=53%  Similarity=0.861  Sum_probs=171.4

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhcc-CCccEEEECCeecCcccccCCCCChhhHHH
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW-RGKLTYILDGDNCRHGLNRDLSFKAEDRVE  158 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~-~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~  158 (269)
                      .|+.|+...++..+|..+..++|.+|||+|+|||||||+++.|...+.. .+..+++++||.+++.+..+++|+..++.+
T Consensus         2 ~~~~~~~~~~~~~~r~~~~~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~~l~~~l~ys~~~r~~   81 (208)
T d1m7ga_           2 TNITFHASALTRSERTELRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGFSEADRNE   81 (208)
T ss_dssp             CCCCHHHHCCCHHHHHHHHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTTTTCCSSHHHHHH
T ss_pred             CCcccccCCcCHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHHHhhcCCCCCChhHHHH
Confidence            4788888889999999999999999999999999999999999987742 345689999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCcceeeccCChHHHHHHHHHHhCC--------CCCccEEEEeCChhHHHhcChhhHHHHHhcCcc
Q 024315          159 NIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLP--------EGDFIEVFMDVPLQVCEARDPKGLYKLAREGKV  230 (269)
Q Consensus       159 ~~~~l~~~a~~~~~~g~~~iv~~~~~~~~~r~~ar~ll~--------~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~  230 (269)
                      ...++.+.+..+...+..++++..++....|+.+++++.        ..++++||+++|++.|.+|+.+++|+.+..+.+
T Consensus        82 ~~~r~~~~a~~~~~~g~~viv~~i~~~~~~R~~~r~i~~~~~~~~~~~~~~~eVyv~~~le~~~~Rd~k~~y~~~~~~~~  161 (208)
T d1m7ga_          82 NIRRIAEVAKLFADSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDPKGLYKKAREGVI  161 (208)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCTTCHHHHHHHTSS
T ss_pred             HHHHHHHHHHHHhccCCceeeecccccHHHHHHHHHHhhhhccchhcCCceEEEEEcCCHHHHHHhhcccchhhhhcCcc
Confidence            999999999999999999999999999999988887642        236889999999999999999999999999999


Q ss_pred             ccccccccccCCCCCCCeEEEcCCCcCHHHHHH-HHhhc
Q 024315          231 KGFTGIDDPYEPPLNCEVGVHVWYRFELAETWR-ITKWL  268 (269)
Q Consensus       231 ~~~~~i~~~~e~p~~~e~~id~~~~~~~~~~~~-i~~~~  268 (269)
                      +++.+++.+||+|.+++++|||+ ..++++|.. |.++|
T Consensus       162 ~~~~gvd~~ye~P~~~dl~Idt~-~~s~~e~~~~Ii~~L  199 (208)
T d1m7ga_         162 KEFTGISAPYEAPANPEVHVKNY-ELPVQDAVKQIIDYL  199 (208)
T ss_dssp             SSCBTTTBCCCCCSSCSEEEECS-SSCHHHHHHHHHHHH
T ss_pred             cceecccccCCCCCCCcEEEeCC-CCCHHHHHHHHHHHH
Confidence            99999999999999999999995 788999988 88876

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.74  E-value=1.6e-18  Score=149.45  Aligned_cols=144  Identities=17%  Similarity=0.151  Sum_probs=105.3

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--ccccCCCCChhhHH
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--GLNRDLSFKAEDRV  157 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--~l~~~~g~~~~~~~  157 (269)
                      .|+++.++.+.+.+++||.+++|++++|+||||||||||+++|.+++ .|.+|.|+++|.++..  ..++.++|.+|+..
T Consensus        10 ~nlsk~yg~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~-~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~   88 (239)
T d1v43a3          10 ENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE-EPTEGRIYFGDRDVTYLPPKDRNISMVFQSYA   88 (239)
T ss_dssp             EEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS-CCSEEEEEETTEECTTSCGGGGTEEEEEC---
T ss_pred             EEEEEEECCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCC-CCCCCEEEEcceecccCCcccceEEEEeechh
Confidence            57888888999999999999999999999999999999999999988 5779999999998863  22334454444321


Q ss_pred             --------HHHH------------HHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhH
Q 024315          158 --------ENIR------------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV  212 (269)
Q Consensus       158 --------~~~~------------~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~  212 (269)
                              +++.            .-..+...+...++..    .+..+++++++| .++++++.+|++  +++|||+..
T Consensus        89 l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~i--LllDEPts~  166 (239)
T d1v43a3          89 VWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDV--LLMDEPLSN  166 (239)
T ss_dssp             ---CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSE--EEEESTTTT
T ss_pred             hcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCCCc--eeecCCccc
Confidence                    1100            0011223344444433    244456666776 799999999999  999999999


Q ss_pred             HHhcChhhHHHHHh
Q 024315          213 CEARDPKGLYKLAR  226 (269)
Q Consensus       213 l~~R~~k~l~~~~r  226 (269)
                      ++......+.+.++
T Consensus       167 LD~~~~~~i~~ll~  180 (239)
T d1v43a3         167 LDAKLRVAMRAEIK  180 (239)
T ss_dssp             SCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH
Confidence            99988877665544

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1e-17  Score=137.49  Aligned_cols=168  Identities=51%  Similarity=0.895  Sum_probs=103.1

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHHHHHHHHHHHHHhCCcceee
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIA  179 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~l~~~a~~~~~~g~~~iv  179 (269)
                      .+|.+|+|+|+|||||||+++.|+..+.........++++..+........+..........+...........+...+.
T Consensus        17 ~~g~vI~L~G~pGSGKTTiAk~La~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (195)
T d1x6va3          17 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCIT   96 (195)
T ss_dssp             CCCEEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEEECHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCccchhHHhhhcccccccchhhhHHHHHHHHHHHHHHHHHhcCCcccc
Confidence            47899999999999999999999999976665667788887776666666677766666666666666666677777766


Q ss_pred             ccCChHHHHHHHHHHhCCC--CCccEEEEeCChhHHHhcChhhHHHHHhcCccccccccccccCCCCCCCeEEEcCCCcC
Q 024315          180 CLISPYRKDRDACRSMLPE--GDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEVGVHVWYRFE  257 (269)
Q Consensus       180 ~~~~~~~~~r~~ar~ll~~--~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~~i~~~~e~p~~~e~~id~~~~~~  257 (269)
                      .........+...+.+...  ..+..+...+++..+..+..++............+..++..||+|.+++++|||+ ..+
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~dl~IdT~-~~s  175 (195)
T d1x6va3          97 SFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDSEYEKPEAPELVLKTD-SCD  175 (195)
T ss_dssp             ECCCCCHHHHHHHHHHHHTTTCCEEEEEECC------------------------------CCCCCSSCSEEECTT-TSC
T ss_pred             ccccchHHHHHHHHHHHhccccccccccchhheeeehhhccchhhhhhhhhhhhhhhhhccccCCCCCCCEEEECC-CCC
Confidence            6655544444444444332  2345567888888888888777766666667777888889999999999999995 788


Q ss_pred             HHHHHH-HHhhc
Q 024315          258 LAETWR-ITKWL  268 (269)
Q Consensus       258 ~~~~~~-i~~~~  268 (269)
                      +++|.. |.++|
T Consensus       176 ~ee~~~~Il~~l  187 (195)
T d1x6va3         176 VNDCVQQVVELL  187 (195)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999988 88876

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=1.1e-18  Score=149.82  Aligned_cols=144  Identities=17%  Similarity=0.113  Sum_probs=95.3

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--ccccCCCCChhhHH
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--GLNRDLSFKAEDRV  157 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--~l~~~~g~~~~~~~  157 (269)
                      .|+++.++.+.+.+++||.+++|++++|+||||||||||+++|++++ .+.+|.|.++|.++..  ..++.++|.+|+..
T Consensus         4 ~nv~k~yg~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~-~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~   82 (232)
T d2awna2           4 QNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE-TITSGDLFIGEKRMNDTPPAERGVGMVFQSYA   82 (232)
T ss_dssp             EEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS-CCSEEEEEESSSCCTTSCGGGTCEEEECSSCC
T ss_pred             EEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCC-CCCCCEEEECCEECCCCchhhceeeeeccccc
Confidence            46788888999999999999999999999999999999999999987 5779999999988753  22333444433210


Q ss_pred             --------HHH------H------HHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhH
Q 024315          158 --------ENI------R------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV  212 (269)
Q Consensus       158 --------~~~------~------~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~  212 (269)
                              +++      .      .-..+..++...++..    .+..+|+++++| .++++++.+|++  +++|||+..
T Consensus        83 l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~i--lllDEPts~  160 (232)
T d2awna2          83 LYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSV--FLLDEPLSN  160 (232)
T ss_dssp             C---------------------CHHHHHHHHHHHHC---------------------CHHHHHHTCCSE--EEEESTTTT
T ss_pred             cccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEcCCCCC
Confidence                    000      0      0011223334444422    344567777777 599999999999  999999999


Q ss_pred             HHhcChhhHHHHHh
Q 024315          213 CEARDPKGLYKLAR  226 (269)
Q Consensus       213 l~~R~~k~l~~~~r  226 (269)
                      ++......+...++
T Consensus       161 LD~~~~~~i~~~l~  174 (232)
T d2awna2         161 LDAALRVQMRIEIS  174 (232)
T ss_dssp             SCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH
Confidence            99988877665444

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.73  E-value=3.8e-18  Score=147.23  Aligned_cols=141  Identities=16%  Similarity=0.137  Sum_probs=104.8

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc--------cccCCCC
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--------LNRDLSF  151 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~--------l~~~~g~  151 (269)
                      .|+...++.+.+.+++||.+++|++++|+||||||||||+++|++++ .|.+|.|.++|.++...        .++.+++
T Consensus         7 ~nl~k~yg~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~-~p~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~   85 (240)
T d1g2912           7 VDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLE-EPSRGQIYIGDKLVADPEKGIFVPPKDRDIAM   85 (240)
T ss_dssp             EEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS-CCSEEEEEETTEEEEEGGGTEECCGGGSSEEE
T ss_pred             EeEEEEECCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCC-CCCCCEEEECCEEecccchhhhccccccccee
Confidence            57888888999999999999999999999999999999999999988 57799999999876421        1233443


Q ss_pred             ChhhH-----------------------HHHHHHHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccE
Q 024315          152 KAEDR-----------------------VENIRRIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIE  203 (269)
Q Consensus       152 ~~~~~-----------------------~~~~~~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~  203 (269)
                      ..|+.                       .+..+++   ..++...++..    .+..+|++++|| .+||+++.+|++  
T Consensus        86 v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v---~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~P~i--  160 (240)
T d1g2912          86 VFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRV---REVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQV--  160 (240)
T ss_dssp             ECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHH---HHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSE--
T ss_pred             cccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHH---HHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCE--
Confidence            33311                       1111122   22333333322    345568888888 699999999999  


Q ss_pred             EEEeCChhHHHhcChhhHHHHHh
Q 024315          204 VFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       204 i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      +++|||+..++......+.+.++
T Consensus       161 LllDEPt~~LD~~~~~~i~~~l~  183 (240)
T d1g2912         161 FLMDEPLSNLDAKLRVRMRAELK  183 (240)
T ss_dssp             EEEECTTTTSCHHHHHHHHHHHH
T ss_pred             EEecCCCcccCHHHHHHHHHHHH
Confidence            99999999999998888665544

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.73  E-value=4.5e-18  Score=146.83  Aligned_cols=144  Identities=17%  Similarity=0.166  Sum_probs=104.6

Q ss_pred             cceEEee--CceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-------ccccCCC
Q 024315           80 TNILWHK--NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-------GLNRDLS  150 (269)
Q Consensus        80 ~~~~~~~--~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-------~l~~~~g  150 (269)
                      .|++..+  +.+.+.+++||++++|++++|+||||||||||+++|.+++ .|.+|.|+++|.++..       ..++.+|
T Consensus         7 ~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~-~p~~G~I~~~g~~i~~~~~~~~~~~rr~ig   85 (242)
T d1oxxk2           7 KNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLD-VPSTGELYFDDRLVASNGKLIVPPEDRKIG   85 (242)
T ss_dssp             EEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSS-CCSEEEEEETTEEEEETTEESSCGGGSCEE
T ss_pred             EeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCc-CCCCceEEECCEEeecCchhhcchhhccce
Confidence            4566655  5688899999999999999999999999999999999987 5779999999998742       1233344


Q ss_pred             CChhhH--------HHHHH------------HHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEE
Q 024315          151 FKAEDR--------VENIR------------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVF  205 (269)
Q Consensus       151 ~~~~~~--------~~~~~------------~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~  205 (269)
                      |..|+.        .+++.            .-..+..++...++..    .+..+|++++|| .++|+++.+|++  ++
T Consensus        86 ~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~P~l--ll  163 (242)
T d1oxxk2          86 MVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSL--LL  163 (242)
T ss_dssp             EEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE--EE
T ss_pred             EEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHhhcccc--ee
Confidence            433321        01110            0012333444555533    345567888888 699999999999  99


Q ss_pred             EeCChhHHHhcChhhHHHHHh
Q 024315          206 MDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       206 ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      +|||+..++......+.+.++
T Consensus       164 lDEPt~~LD~~~~~~i~~~i~  184 (242)
T d1oxxk2         164 LDEPFSNLDARMRDSARALVK  184 (242)
T ss_dssp             EESTTTTSCGGGHHHHHHHHH
T ss_pred             ecCCccCCCHHHHHHHHHHHH
Confidence            999999999999888665543

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.72  E-value=3.5e-18  Score=146.66  Aligned_cols=135  Identities=17%  Similarity=0.183  Sum_probs=97.2

Q ss_pred             eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-------c-ccCCCCChhhH----
Q 024315           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------L-NRDLSFKAEDR----  156 (269)
Q Consensus        89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-------l-~~~~g~~~~~~----  156 (269)
                      +.+.+++||.+++|++++|+||||||||||+++|++++ .|.+|.|+++|.++...       + ++.++|..|+.    
T Consensus        18 ~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~-~p~sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~   96 (230)
T d1l2ta_          18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLD-KPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIP   96 (230)
T ss_dssp             EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS-CCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCT
T ss_pred             EEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCC-CCCcceeEECCEEcCcCChhhcchhhcceEEEEecchhhCc
Confidence            56789999999999999999999999999999999987 57799999999987531       0 11123222210    


Q ss_pred             ----HHHH---------------HHHHHHHHHHHhCCcce-----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChh
Q 024315          157 ----VENI---------------RRIGEVAKLFADAGVIC-----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQ  211 (269)
Q Consensus       157 ----~~~~---------------~~l~~~a~~~~~~g~~~-----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~  211 (269)
                          .+++               .+..++...+...++..     .+..+|++++|| .+||+++.+|++  +++|||+.
T Consensus        97 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL~~~P~l--LllDEPTs  174 (230)
T d1l2ta_          97 LLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPI--ILADQPTG  174 (230)
T ss_dssp             TSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSE--EEEESTTT
T ss_pred             CccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhhhhcCCCE--EEecCCcc
Confidence                1111               11122334444445422     345568888888 699999999999  99999999


Q ss_pred             HHHhcChhhHHHHHh
Q 024315          212 VCEARDPKGLYKLAR  226 (269)
Q Consensus       212 ~l~~R~~k~l~~~~r  226 (269)
                      .++...++.+.+.++
T Consensus       175 ~LD~~~~~~i~~~l~  189 (230)
T d1l2ta_         175 ALDSKTGEKIMQLLK  189 (230)
T ss_dssp             TSCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHH
Confidence            999998888665544

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.71  E-value=7.2e-18  Score=144.46  Aligned_cols=143  Identities=16%  Similarity=0.220  Sum_probs=102.7

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--ccccCCCCChhhH-
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--GLNRDLSFKAEDR-  156 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--~l~~~~g~~~~~~-  156 (269)
                      .|++..+..+ +.+++||.+++|++++|+||||||||||+++|++++ .+.+|.|.++|.++..  ..++.++|..|+. 
T Consensus         5 ~nlsk~y~~~-aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~-~p~sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~   82 (229)
T d3d31a2           5 ESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFH-VPDSGRILLDGKDVTDLSPEKHDIAFVYQNYS   82 (229)
T ss_dssp             EEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSS-CCSEEEEEETTEECTTSCHHHHTCEEECTTCC
T ss_pred             EEEEEEeCCE-EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCc-CCCCCEEEEccEeccccchhHhcceeeccccc
Confidence            4667777664 678999999999999999999999999999999987 5779999999999863  1222344333311 


Q ss_pred             -------HHHHHH---H------HHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHh
Q 024315          157 -------VENIRR---I------GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEA  215 (269)
Q Consensus       157 -------~~~~~~---l------~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~  215 (269)
                             .+++..   .      .++...+...++..    .+..+++++++| .++|+++.+|++  +++|||+..++.
T Consensus        83 l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~i--LllDEPts~LD~  160 (229)
T d3d31a2          83 LFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKI--LLLDEPLSALDP  160 (229)
T ss_dssp             CCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSE--EEEESSSTTSCH
T ss_pred             cCccccHHHHHHHHHhhccccHHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCCc--eeecCCCcCCCH
Confidence                   111111   0      12333344444432    344567788887 699999999999  999999999999


Q ss_pred             cChhhHHHHHh
Q 024315          216 RDPKGLYKLAR  226 (269)
Q Consensus       216 R~~k~l~~~~r  226 (269)
                      .....+.+.++
T Consensus       161 ~~~~~i~~~l~  171 (229)
T d3d31a2         161 RTQENAREMLS  171 (229)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88877665544

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=99.71  E-value=8.5e-17  Score=129.42  Aligned_cols=169  Identities=38%  Similarity=0.622  Sum_probs=112.0

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHHhhccCC-ccEEEECCeecCcccccCCCCChhhHHHHHHHHHHHHHHHHhCCcce
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRG-KLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVIC  177 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~-~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~l~~~a~~~~~~g~~~  177 (269)
                      ..+|.+|||+|+|||||||+++.|++.|.... .....++.+..+...........+.......................
T Consensus         3 ~~~g~~I~l~G~~GsGKTTia~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (183)
T d1m8pa3           3 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTNIQRIAFVATELTRAGAAV   82 (183)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHTCTTCCCSHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCchhhhhhHHhhhccccccchhHHHHHHHHHHHHHHhhhhhccccee
Confidence            46899999999999999999999999986432 23344444444332222223333333333333333333333333333


Q ss_pred             eeccCChHHHH-HHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCccccccccccccCCCCCCCeEEEcCCCc
Q 024315          178 IACLISPYRKD-RDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEVGVHVWYRF  256 (269)
Q Consensus       178 iv~~~~~~~~~-r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~~i~~~~e~p~~~e~~id~~~~~  256 (269)
                      ........... ............+..++.+++...+..|.....+.....+....+.++...|+.|..++++|||+ ..
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~IDT~-~~  161 (183)
T d1m8pa3          83 IAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDKRGIYAAARRGEIKGFTGVDDPYETPEKADLVVDFS-KQ  161 (183)
T ss_dssp             EEECCCCCHHHHHHHHHHHHTTSEEEEEEECCCHHHHHHHCSSCHHHHHHTTSSSSCBTTTBCCCCCSSCSEEECTT-TS
T ss_pred             ecccchhhhHHHHHHHHhhcccchhhhhhHHHHHHHHHhhhhhhcccchhhchhhhhhhhcccccCCCCCcEEEECC-CC
Confidence            33333222222 22222222333466689999999999999999988888889888999999999999999999996 78


Q ss_pred             CHHHHHH-HHhhc
Q 024315          257 ELAETWR-ITKWL  268 (269)
Q Consensus       257 ~~~~~~~-i~~~~  268 (269)
                      +++++.. |.+||
T Consensus       162 s~~e~v~~I~~~L  174 (183)
T d1m8pa3         162 SVRSIVHEIILVL  174 (183)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            8999988 98887

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.69  E-value=5.3e-17  Score=140.18  Aligned_cols=144  Identities=15%  Similarity=0.211  Sum_probs=102.6

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc---c--ccCCCCChh
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---L--NRDLSFKAE  154 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~---l--~~~~g~~~~  154 (269)
                      .+++..++.+.+.+++||.+++|++++|+||||||||||+++|.+.+ .+.+|.|.++|.++...   .  +..++|.+|
T Consensus        10 ~~l~k~yg~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~-~p~~G~I~~~G~~i~~~~~~~~~r~gi~~~~q   88 (240)
T d1ji0a_          10 QSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLV-RAQKGKIIFNGQDITNKPAHVINRMGIALVPE   88 (240)
T ss_dssp             EEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS-CCSEEEEEETTEECTTCCHHHHHHTTEEEECS
T ss_pred             eeEEEEECCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCC-CCCccEEEecccccccccHHHHHHhcccccCc
Confidence            57888888999999999999999999999999999999999999988 57799999999987531   0  111112211


Q ss_pred             hH--------H--------------HHHHHHHHHHHHHH--hCCcceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCC
Q 024315          155 DR--------V--------------ENIRRIGEVAKLFA--DAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVP  209 (269)
Q Consensus       155 ~~--------~--------------~~~~~l~~~a~~~~--~~g~~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p  209 (269)
                      ++        .              ...+.+......+.  .......+..+|+++++| .++++++.+|++  +++|||
T Consensus        89 ~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~l--LllDEP  166 (240)
T d1ji0a_          89 GRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKL--LMMDEP  166 (240)
T ss_dssp             SCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSE--EEEECT
T ss_pred             ccccCCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHHHhCCCE--eeecCC
Confidence            10        0              11111112221111  111223445667777777 689999999999  999999


Q ss_pred             hhHHHhcChhhHHHHHh
Q 024315          210 LQVCEARDPKGLYKLAR  226 (269)
Q Consensus       210 ~~~l~~R~~k~l~~~~r  226 (269)
                      +..++......+++.++
T Consensus       167 t~gLD~~~~~~i~~~i~  183 (240)
T d1ji0a_         167 SLGLAPILVSEVFEVIQ  183 (240)
T ss_dssp             TTTCCHHHHHHHHHHHH
T ss_pred             CcCCCHHHHHHHHHHHH
Confidence            99999998888775544

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.69  E-value=6.5e-17  Score=140.73  Aligned_cols=145  Identities=18%  Similarity=0.185  Sum_probs=105.1

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-----cccCCCCChh
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAE  154 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-----l~~~~g~~~~  154 (269)
                      .|++..++.+.+.+++||++++|++++|+||||||||||+++|.|.+ .+.+|.|.++|.++...     .+.++++.+|
T Consensus         8 ~nlsk~yg~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~-~p~~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q   86 (254)
T d1g6ha_           8 ENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFL-KADEGRVYFENKDITNKEPAELYHYGIVRTFQ   86 (254)
T ss_dssp             EEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSS-CCSEEEEEETTEECTTCCHHHHHHHTEEECCC
T ss_pred             EEEEEEECCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCC-cCCCcEEEECCEeccchhHHHHHHhcCCccCC
Confidence            57888888999999999999999999999999999999999999988 57799999999998531     1112333332


Q ss_pred             hH--------HHHHH-------------------------HHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhC
Q 024315          155 DR--------VENIR-------------------------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSML  196 (269)
Q Consensus       155 ~~--------~~~~~-------------------------~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll  196 (269)
                      +.        .+++.                         .......++...++..    .+..+++++++| .++|+++
T Consensus        87 ~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~Qrv~iAraL~  166 (254)
T d1g6ha_          87 TPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALM  166 (254)
T ss_dssp             CCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHH
T ss_pred             ccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCCcHHHHHHHHHHHHH
Confidence            21        11110                         0011222333334322    345567777777 6899999


Q ss_pred             CCCCccEEEEeCChhHHHhcChhhHHHHHhc
Q 024315          197 PEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (269)
Q Consensus       197 ~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~  227 (269)
                      .+|++  +++|||+..++......+++.+++
T Consensus       167 ~~P~l--lilDEPt~gLD~~~~~~i~~~i~~  195 (254)
T d1g6ha_         167 TNPKM--IVMDEPIAGVAPGLAHDIFNHVLE  195 (254)
T ss_dssp             TCCSE--EEEESTTTTCCHHHHHHHHHHHHH
T ss_pred             hCcCc--hhhcCCcccCCHHHHHHHHHHHHH
Confidence            99999  999999999999888887766543

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=1.8e-17  Score=142.91  Aligned_cols=135  Identities=17%  Similarity=0.224  Sum_probs=97.1

Q ss_pred             eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc-------ccccCCCCChhhH-----
Q 024315           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-------GLNRDLSFKAEDR-----  156 (269)
Q Consensus        89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~-------~l~~~~g~~~~~~-----  156 (269)
                      +.+.+++||.+++|++++|+||||||||||+++|++++ .+.+|.|.++|.++..       .+++.++|..|+.     
T Consensus        18 ~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~-~p~sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~   96 (240)
T d3dhwc1          18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE-RPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSS   96 (240)
T ss_dssp             EEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSS-CCSEEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTT
T ss_pred             EEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCc-cccCCceEEcCeEeeeCChhhhhhhhccccccccccccCCC
Confidence            56789999999999999999999999999999999987 5779999999998752       1222233333311     


Q ss_pred             ---HHHHHH------------HHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhc
Q 024315          157 ---VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEAR  216 (269)
Q Consensus       157 ---~~~~~~------------l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R  216 (269)
                         .+++..            ...+...+...++..    .+..+|++++|| .++|+++.+|++  +++|||+..++..
T Consensus        97 ~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~P~l--LllDEPt~~LD~~  174 (240)
T d3dhwc1          97 RTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKV--LLCDEATSALDPA  174 (240)
T ss_dssp             SBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTCCSE--EEEESGGGSSCHH
T ss_pred             ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhccCCCe--EEeccccccCCHH
Confidence               111110            011223333334422    345567888888 699999999999  9999999999998


Q ss_pred             ChhhHHHHHh
Q 024315          217 DPKGLYKLAR  226 (269)
Q Consensus       217 ~~k~l~~~~r  226 (269)
                      ....+.+.++
T Consensus       175 ~~~~i~~~l~  184 (240)
T d3dhwc1         175 TTRSILELLK  184 (240)
T ss_dssp             HHHHHHHHHH
T ss_pred             HhhHHHHHHH
Confidence            8877665544

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.68  E-value=5.4e-17  Score=139.92  Aligned_cols=144  Identities=15%  Similarity=0.161  Sum_probs=103.7

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc---ccccCCCCChhhH
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH---GLNRDLSFKAEDR  156 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~---~l~~~~g~~~~~~  156 (269)
                      .|++..++...+.+++||.+++|++++|+||||||||||+++|+|++ .|.+|.|.++|.++.+   .+++.++|.+|+.
T Consensus         6 ~nl~k~yg~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~-~p~~G~i~i~G~~i~~~~~~~~~~i~~vpq~~   84 (238)
T d1vpla_           6 KDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLI-KPSSGIVTVFGKNVVEEPHEVRKLISYLPEEA   84 (238)
T ss_dssp             EEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEETTEETTTCHHHHHTTEEEECTTC
T ss_pred             EeEEEEECCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCCEEEECcEecccChHHHHhhEeEeeecc
Confidence            47888888999999999999999999999999999999999999988 5779999999998753   2233334333321


Q ss_pred             --------HHHHHHH-----------H-HHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChh
Q 024315          157 --------VENIRRI-----------G-EVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQ  211 (269)
Q Consensus       157 --------~~~~~~l-----------~-~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~  211 (269)
                              .+++...           . .+...+...++..    .+...++++++| ..+++++.+|++  +++|||+.
T Consensus        85 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~i--llLDEPt~  162 (238)
T d1vpla_          85 GAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRL--AILDEPTS  162 (238)
T ss_dssp             CCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSE--EEEESTTT
T ss_pred             ccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCCE--EEecCCCC
Confidence                    1111111           0 1112222223321    244456677766 699999999999  99999999


Q ss_pred             HHHhcChhhHHHHHh
Q 024315          212 VCEARDPKGLYKLAR  226 (269)
Q Consensus       212 ~l~~R~~k~l~~~~r  226 (269)
                      .++......+.+.++
T Consensus       163 gLD~~~~~~i~~~i~  177 (238)
T d1vpla_         163 GLDVLNAREVRKILK  177 (238)
T ss_dssp             TCCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH
Confidence            999988777665544

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.67  E-value=2.1e-17  Score=142.96  Aligned_cols=144  Identities=17%  Similarity=0.195  Sum_probs=101.2

Q ss_pred             cceEEeeCc-eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChh
Q 024315           80 TNILWHKNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAE  154 (269)
Q Consensus        80 ~~~~~~~~~-v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~  154 (269)
                      .|++|.+.. ....++++|.+++|++++|+|+||||||||+++|++++ .|.+|.|.++|.++..    .+++.++|.+|
T Consensus         5 knvsf~Y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~-~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q   83 (242)
T d1mv5a_           5 RHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFY-QPTAGEITIDGQPIDNISLENWRSQIGFVSQ   83 (242)
T ss_dssp             EEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSS-CCSBSCEEETTEESTTTSCSCCTTTCCEECC
T ss_pred             EEEEEECCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhh-CCCCCEEEECCEEeccccHHHHHhheEEEcc
Confidence            467777643 34567889999999999999999999999999999988 5779999999998763    44555665555


Q ss_pred             hH-------HHHHH----------HHHHHHHHHHhC--------Cccee----eccCChHHHHH-HHHHHhCCCCCccEE
Q 024315          155 DR-------VENIR----------RIGEVAKLFADA--------GVICI----ACLISPYRKDR-DACRSMLPEGDFIEV  204 (269)
Q Consensus       155 ~~-------~~~~~----------~l~~~a~~~~~~--------g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~i  204 (269)
                      +.       ++++.          .+.+........        +....    ...+++++++| .+||+++.++++  +
T Consensus        84 ~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~i--l  161 (242)
T d1mv5a_          84 DSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI--L  161 (242)
T ss_dssp             SSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE--E
T ss_pred             ccccCCcchhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCCE--E
Confidence            32       12210          001111111000        11111    12357788887 699999999999  9


Q ss_pred             EEeCChhHHHhcChhhHHHHHh
Q 024315          205 FMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       205 ~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      ++|||+..++....+.+.+.++
T Consensus       162 ilDEpts~LD~~~~~~i~~~l~  183 (242)
T d1mv5a_         162 MLDEATASLDSESESMVQKALD  183 (242)
T ss_dssp             EEECCSCSSCSSSCCHHHHHHH
T ss_pred             EecCCccccCHHHHHHHHHHHH
Confidence            9999999999998887765554

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=6.8e-17  Score=140.36  Aligned_cols=134  Identities=19%  Similarity=0.193  Sum_probs=91.6

Q ss_pred             eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhh-------HHHH
Q 024315           91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAED-------RVEN  159 (269)
Q Consensus        91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~-------~~~~  159 (269)
                      ..++++|++++|++++|+|+||||||||+++|.+++ .|.+|.|+++|.++..    .+++.+++.+|+       ..++
T Consensus        29 vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~-~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~en  107 (251)
T d1jj7a_          29 VLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLY-QPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQEN  107 (251)
T ss_dssp             SEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS-CCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHH
T ss_pred             eEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhccc-CCCcCEEEECCEecchhhhHHHHHHhhhccccccccCcchhhh
Confidence            446678999999999999999999999999999988 5779999999998753    122212221111       0111


Q ss_pred             H--------------HHHH--HHHHHHHhC--Cccee----eccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhc
Q 024315          160 I--------------RRIG--EVAKLFADA--GVICI----ACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEAR  216 (269)
Q Consensus       160 ~--------------~~l~--~~a~~~~~~--g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R  216 (269)
                      +              ....  .....+...  +....    ...+++++++| .+||+++.++++  +++|||+..++..
T Consensus       108 i~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~~~p~i--lilDEpTs~LD~~  185 (251)
T d1jj7a_         108 IAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCV--LILDDATSALDAN  185 (251)
T ss_dssp             HHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHTTCCSE--EEEESTTTTCCHH
T ss_pred             hhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeeccccCCcE--EEecCcCcccChh
Confidence            1              1000  001111111  22222    23467888888 699999999999  9999999999998


Q ss_pred             ChhhHHHHHhc
Q 024315          217 DPKGLYKLARE  227 (269)
Q Consensus       217 ~~k~l~~~~r~  227 (269)
                      ....+.+.+++
T Consensus       186 ~~~~i~~~l~~  196 (251)
T d1jj7a_         186 SQLQVEQLLYE  196 (251)
T ss_dssp             HHHHHHHHHHT
T ss_pred             hHHHHHHHHHH
Confidence            88887777654

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.66  E-value=2.5e-17  Score=143.64  Aligned_cols=144  Identities=21%  Similarity=0.230  Sum_probs=103.6

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc---------------
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---------------  144 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~---------------  144 (269)
                      .|+++.++.+.+.+++||++++||+++|+|+||||||||+++|+|++ .+.+|.|+++|.++...               
T Consensus         6 ~nl~k~yg~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~-~p~~G~I~~~G~~i~~~~~~~~~~~~~~~~~~   84 (258)
T d1b0ua_           6 IDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLE-KPSEGAIIVNGQNINLVRDKDGQLKVADKNQL   84 (258)
T ss_dssp             EEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEETTEECCEEECTTSSEEESCHHHH
T ss_pred             EEEEEEECCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCc-cCCCCCEEECCEEeccCCccchhcccccHhHH
Confidence            46778888899999999999999999999999999999999999987 57799999999987421               


Q ss_pred             --cccCCCCChhh--------HHHHHH-------------HHHHHHHHHHhCCcce-----eeccCChHHHHH-HHHHHh
Q 024315          145 --LNRDLSFKAED--------RVENIR-------------RIGEVAKLFADAGVIC-----IACLISPYRKDR-DACRSM  195 (269)
Q Consensus       145 --l~~~~g~~~~~--------~~~~~~-------------~l~~~a~~~~~~g~~~-----iv~~~~~~~~~r-~~ar~l  195 (269)
                        .++.++|..|+        -.+++.             ........+...++..     .+..+|++++|| .+++++
T Consensus        85 ~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~iAraL  164 (258)
T d1b0ua_          85 RLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARAL  164 (258)
T ss_dssp             HHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHH
T ss_pred             HHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHHHHHHH
Confidence              01111211110        011100             0012233444445532     245568888888 699999


Q ss_pred             CCCCCccEEEEeCChhHHHhcChhhHHHHHh
Q 024315          196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       196 l~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      +.+|++  +++|||+..++....+.+++.++
T Consensus       165 ~~~P~l--lilDEPT~gLD~~~~~~i~~ll~  193 (258)
T d1b0ua_         165 AMEPDV--LLFDEPTSALDPELVGEVLRIMQ  193 (258)
T ss_dssp             HTCCSE--EEEESTTTTSCHHHHHHHHHHHH
T ss_pred             hcCCCE--EEeccccccCCHHHHHHHHHhhh
Confidence            999999  99999999999998888665554

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=3.5e-17  Score=141.40  Aligned_cols=144  Identities=22%  Similarity=0.278  Sum_probs=97.0

Q ss_pred             cceEEeeC--ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCCh
Q 024315           80 TNILWHKN--SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKA  153 (269)
Q Consensus        80 ~~~~~~~~--~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~  153 (269)
                      .|++|.+.  .....+++||.+++|++++|+|+||||||||+++|.|++ .+.+|.|.++|.++..    .+++.++|.+
T Consensus         5 ~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~-~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~   83 (241)
T d2pmka1           5 RNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFY-IPENGQVLIDGHDLALADPNWLRRQVGVVL   83 (241)
T ss_dssp             EEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS-CCSEEEEEETTEETTTSCHHHHHHHEEEEC
T ss_pred             EEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcC-CCCCCEEEECCEEecccchhhhhceEEEEe
Confidence            35666652  333567889999999999999999999999999999988 5779999999998863    2222222222


Q ss_pred             hhH-------HHH------------HHHHHHHH---HHHHh--CCccee----eccCChHHHHH-HHHHHhCCCCCccEE
Q 024315          154 EDR-------VEN------------IRRIGEVA---KLFAD--AGVICI----ACLISPYRKDR-DACRSMLPEGDFIEV  204 (269)
Q Consensus       154 ~~~-------~~~------------~~~l~~~a---~~~~~--~g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~i  204 (269)
                      |+.       +++            +....+.+   ..+..  .+....    ...+++++++| .++|+++.++++  +
T Consensus        84 Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~i--l  161 (241)
T d2pmka1          84 QDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKI--L  161 (241)
T ss_dssp             SSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSE--E
T ss_pred             cccccCCccccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccch--h
Confidence            210       111            11111111   11111  111111    23457788887 699999999999  9


Q ss_pred             EEeCChhHHHhcChhhHHHHHh
Q 024315          205 FMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       205 ~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      ++|||+..++....+.+.+.++
T Consensus       162 ilDEpts~LD~~~~~~i~~~l~  183 (241)
T d2pmka1         162 IFDEATSALDYESEHVIMRNMH  183 (241)
T ss_dssp             EECCCCSCCCHHHHHHHHHHHH
T ss_pred             hhhCCccccCHHHHHHHHHHHH
Confidence            9999999999998887665544

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.65  E-value=5.2e-16  Score=130.34  Aligned_cols=142  Identities=18%  Similarity=0.193  Sum_probs=97.3

Q ss_pred             cceEEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCccc------ccCC----
Q 024315           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL------NRDL----  149 (269)
Q Consensus        80 ~~~~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l------~~~~----  149 (269)
                      .|+++.+. ....+++++++++|++++|+||||||||||+++|++.+ .|.+|.|.++|.++.+.-      ....    
T Consensus         6 ~~ls~~y~-~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~-~p~~G~I~~~g~~i~~~~~~i~~~~~~~~~~~   83 (200)
T d1sgwa_           6 RDLSVGYD-KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYL-KPLKGEIIYNGVPITKVKGKIFFLPEEIIVPR   83 (200)
T ss_dssp             EEEEEESS-SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEETTEEGGGGGGGEEEECSSCCCCT
T ss_pred             EEEEEEeC-CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhccc-ccCCCEEEECCEehhHhcCcEEEEeecccCCC
Confidence            35666663 35688999999999999999999999999999999988 577999999998875310      0111    


Q ss_pred             CCChhhHHHHHHHH-------HHHHHHHHhCCc---ceeeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcCh
Q 024315          150 SFKAEDRVENIRRI-------GEVAKLFADAGV---ICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDP  218 (269)
Q Consensus       150 g~~~~~~~~~~~~l-------~~~a~~~~~~g~---~~iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~  218 (269)
                      .++..+..+....+       .++...+...+.   ..-+...++++++| ..+++++.++++  +++|||+..++....
T Consensus        84 ~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ia~al~~~~~l--lllDEPt~gLD~~~~  161 (200)
T d1sgwa_          84 KISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEI--YVLDDPVVAIDEDSK  161 (200)
T ss_dssp             TSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSE--EEEESTTTTSCTTTH
T ss_pred             CcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCcccccccCcCCCcHHHHHHHHHHHhcCCCE--EEEcCcccccCHHHH
Confidence            11222221111111       122223333332   22344567777777 699999999999  999999999999888


Q ss_pred             hhHHHHH
Q 024315          219 KGLYKLA  225 (269)
Q Consensus       219 k~l~~~~  225 (269)
                      +.+.+.+
T Consensus       162 ~~i~~~l  168 (200)
T d1sgwa_         162 HKVLKSI  168 (200)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7765443

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.63  E-value=6.1e-16  Score=133.08  Aligned_cols=138  Identities=17%  Similarity=0.200  Sum_probs=97.5

Q ss_pred             EEeeCceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc--ccccCCCCChhhH----
Q 024315           83 LWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--GLNRDLSFKAEDR----  156 (269)
Q Consensus        83 ~~~~~~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~--~l~~~~g~~~~~~----  156 (269)
                      +...+.+..  ++++.+. +++++|+||||||||||+++|+|++ .|.+|.|.++|.++..  ..++.++|.+|+.    
T Consensus         8 ~k~~g~~~~--~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~-~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~   83 (240)
T d2onka1           8 EKRLGNFRL--NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIV-KPDRGEVRLNGADITPLPPERRGIGFVPQDYALFP   83 (240)
T ss_dssp             EEEETTEEE--EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSS-CCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCT
T ss_pred             EEEECCEEE--EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCC-CCCceEEEECCEECCcCCHHHcCceeeccchhhcc
Confidence            444455554  4778885 5799999999999999999999988 5779999999998863  2234455555431    


Q ss_pred             ----HHHH----------HHHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcC
Q 024315          157 ----VENI----------RRIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD  217 (269)
Q Consensus       157 ----~~~~----------~~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~  217 (269)
                          .+++          ..-..+..++...++..    .+..+|+++++| .++|+++.+|++  +++|||+..++...
T Consensus        84 ~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~i--lllDEPts~LD~~~  161 (240)
T d2onka1          84 HLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRL--LLLDEPLSAVDLKT  161 (240)
T ss_dssp             TSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSS--BEEESTTSSCCHHH
T ss_pred             cchhhHhhhhhhcccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCc--eEecCccccCCHHH
Confidence                1111          00112334444555533    345567888888 699999999999  99999999999998


Q ss_pred             hhhHHHHHh
Q 024315          218 PKGLYKLAR  226 (269)
Q Consensus       218 ~k~l~~~~r  226 (269)
                      +..+.+.++
T Consensus       162 ~~~i~~~i~  170 (240)
T d2onka1         162 KGVLMEELR  170 (240)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            887665543

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.63  E-value=1.5e-16  Score=138.35  Aligned_cols=143  Identities=19%  Similarity=0.310  Sum_probs=94.7

Q ss_pred             ceEEeeC--ceeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChh
Q 024315           81 NILWHKN--SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAE  154 (269)
Q Consensus        81 ~~~~~~~--~v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~  154 (269)
                      |++|.+.  .....+++||.+++|++++|+|+||||||||+++|.+++ .|.+|.|.++|.++..    .++..++|.+|
T Consensus        18 nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~-~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q   96 (253)
T d3b60a1          18 NVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFY-DIDEGHILMDGHDLREYTLASLRNQVALVSQ   96 (253)
T ss_dssp             EEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTT-CCSEEEEEETTEETTTBCHHHHHHTEEEECS
T ss_pred             EEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhccc-CCCccEEEECCcccchhhhhhhhheEEEEee
Confidence            4444443  233456779999999999999999999999999999988 5679999999998763    12222222222


Q ss_pred             hH-------H-------------HHHHHHHHH---HHHHHh--CCccee----eccCChHHHHH-HHHHHhCCCCCccEE
Q 024315          155 DR-------V-------------ENIRRIGEV---AKLFAD--AGVICI----ACLISPYRKDR-DACRSMLPEGDFIEV  204 (269)
Q Consensus       155 ~~-------~-------------~~~~~l~~~---a~~~~~--~g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~i  204 (269)
                      +.       .             +.+....+.   ......  .|+...    ...+++++++| .+||+++.++++  +
T Consensus        97 ~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~~p~i--l  174 (253)
T d3b60a1          97 NVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPI--L  174 (253)
T ss_dssp             SCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSE--E
T ss_pred             ccccCCcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhcCCCE--E
Confidence            10       0             111111111   111111  122222    23467788887 699999999999  9


Q ss_pred             EEeCChhHHHhcChhhHHHHHh
Q 024315          205 FMDVPLQVCEARDPKGLYKLAR  226 (269)
Q Consensus       205 ~ld~p~~~l~~R~~k~l~~~~r  226 (269)
                      ++|||+..++....+.+++.++
T Consensus       175 ilDEpts~LD~~~~~~i~~~l~  196 (253)
T d3b60a1         175 ILDEATSALDTESERAIQAALD  196 (253)
T ss_dssp             EEETTTSSCCHHHHHHHHHHHH
T ss_pred             EeccccccCCHHHHHHHHHHHH
Confidence            9999999999998887765543

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.60  E-value=2.9e-16  Score=136.53  Aligned_cols=133  Identities=20%  Similarity=0.248  Sum_probs=91.0

Q ss_pred             eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc----ccccCCCCChhh-------HHHH
Q 024315           91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAED-------RVEN  159 (269)
Q Consensus        91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~----~l~~~~g~~~~~-------~~~~  159 (269)
                      ..++++|.+++|++++|+|+||||||||++.|.+++ .+.+|.|.++|.+++.    .++..++|.+|+       .+++
T Consensus        33 vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~-~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Ti~eN  111 (255)
T d2hyda1          33 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY-DVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKEN  111 (255)
T ss_dssp             SEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSS-CCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHH
T ss_pred             ceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcC-CccccccccCCEEcccCCHHHhhheeeeeeccccCCCCCHHHH
Confidence            345668999999999999999999999999999987 5779999999998863    223333322221       0111


Q ss_pred             H------------HHHHHHH---HHHHh--CCcce----eeccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcC
Q 024315          160 I------------RRIGEVA---KLFAD--AGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD  217 (269)
Q Consensus       160 ~------------~~l~~~a---~~~~~--~g~~~----iv~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~  217 (269)
                      +            ....+.+   .....  .|+..    ....+++++++| .+||+++.++++  +++|||+..++...
T Consensus       112 i~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~~p~i--lilDEpts~LD~~t  189 (255)
T d2hyda1         112 ILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPI--LILDEATSALDLES  189 (255)
T ss_dssp             HGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSE--EEEESTTTTCCHHH
T ss_pred             HhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhcCCCE--EEEeCccccCCHHH
Confidence            1            1111111   11111  12211    123457788777 699999999999  89999999999998


Q ss_pred             hhhHHHHHh
Q 024315          218 PKGLYKLAR  226 (269)
Q Consensus       218 ~k~l~~~~r  226 (269)
                      .+.+++.++
T Consensus       190 ~~~i~~~l~  198 (255)
T d2hyda1         190 ESIIQEALD  198 (255)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888776554

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=99.54  E-value=4.4e-14  Score=112.99  Aligned_cols=157  Identities=20%  Similarity=0.123  Sum_probs=97.2

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-------------cccCCCCChhhHHHH-HHHHHHHH
Q 024315          102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------------LNRDLSFKAEDRVEN-IRRIGEVA  167 (269)
Q Consensus       102 g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-------------l~~~~g~~~~~~~~~-~~~l~~~a  167 (269)
                      ..+|+|+|++||||||+++.|++.+..   ..+.++++.....             +..+..+.......+ ++......
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~~---~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLPE---PWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGV   79 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSS---CEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCC---CeEEeecchhhccccccccchhHHhhhhcccchhHHHHHHHHHHHHHHHH
Confidence            568999999999999999999998853   2455555443221             111222222223223 23333445


Q ss_pred             HHHHhCCcceeeccC-ChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCccccccccc-cccCCCCC
Q 024315          168 KLFADAGVICIACLI-SPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGID-DPYEPPLN  245 (269)
Q Consensus       168 ~~~~~~g~~~iv~~~-~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~~i~-~~~e~p~~  245 (269)
                      ..+...+...++... ......+...........+..+++++|.+++.+|.      ..|.++...+.... +.++.|..
T Consensus        80 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~------~~R~~~~~~~~~~~~~~~~~~~~  153 (178)
T d1qhxa_          80 VAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRE------TARGDRVAGMAAKQAYVVHEGVE  153 (178)
T ss_dssp             HHHHHTTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHH------HHTSSSCTTHHHHHTTGGGTTCC
T ss_pred             HHHHhhccceEEeeeecchHHHHHHHHHhhcCCceeecccCCCHHHHHHHH------HhcCCcchhhhhhhhhhhhcCCC
Confidence            555666665544332 22233334444555555677799999999999886      34555554433222 45667778


Q ss_pred             CCeEEEcCCCcCHHHHHH-HHhhc
Q 024315          246 CEVGVHVWYRFELAETWR-ITKWL  268 (269)
Q Consensus       246 ~e~~id~~~~~~~~~~~~-i~~~~  268 (269)
                      ++++|||+ ..+++|+.. |...+
T Consensus       154 ~dl~IDts-~~s~ee~a~~I~~~v  176 (178)
T d1qhxa_         154 YDVEVDTT-HKESIECAWAIAAHV  176 (178)
T ss_dssp             CSEEEETT-SSCHHHHHHHHHTTC
T ss_pred             CCEEEECC-CCCHHHHHHHHHHhc
Confidence            89999995 888999988 66543

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=1.1e-13  Score=110.82  Aligned_cols=156  Identities=19%  Similarity=0.222  Sum_probs=99.2

Q ss_pred             ecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc-----cccCCCCChhhHHHHHHHHHHHHHHHHh
Q 024315           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAEDRVENIRRIGEVAKLFAD  172 (269)
Q Consensus        98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~-----l~~~~g~~~~~~~~~~~~l~~~a~~~~~  172 (269)
                      +.+.+.+++|+|++||||||+++.|++.+..     ..++.+.+...     ......+...........+.........
T Consensus         2 ~~~~~~iivl~G~~GsGKsT~a~~La~~l~~-----~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (171)
T d1knqa_           2 TNHDHHIYVLMGVSGSGKSAVASEVAHQLHA-----AFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQR   76 (171)
T ss_dssp             CCTTSEEEEEECSTTSCHHHHHHHHHHHHTC-----EEEEGGGGCCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHhCC-----CeechhhhhHHHHhhhhccCcceehhhhHHHHHHHHHHHHHHHh
Confidence            3578999999999999999999999999852     34555555421     1122334444444445555555555555


Q ss_pred             CCcceeeccCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCcccccccc---ccccCCCCCC---
Q 024315          173 AGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGI---DDPYEPPLNC---  246 (269)
Q Consensus       173 ~g~~~iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~~i---~~~~e~p~~~---  246 (269)
                      .+...+..+.......+..++.+...  +..+++++|.+.+.+|..+      |.++......+   .+.||.|..+   
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~l~~~~e~~~~Rl~~------R~~~~~~~~~~~~~~~~~e~~~~~e~~  148 (171)
T d1knqa_          77 TNKVSLIVCSALKKHYRDLLREGNPN--LSFIYLKGDFDVIESRLKA------RKGHFFKTQMLVTQFETLQEPGADETD  148 (171)
T ss_dssp             HCSEEEEECCCCSHHHHHHHHTTCTT--EEEEEEECCHHHHHHHHHT------STTCCCCHHHHHHHHHHCCCCCTTCTT
T ss_pred             ccCceEeeccchHHHHHHHHHHhCCC--ceEEeecCCHHHHHHHHHh------CcCCCccHHHHHhhHHHhhCCCcccCC
Confidence            55555665666656666667665443  4558999999999998844      33333222222   2346655543   


Q ss_pred             CeEEEcCCCcCHHHHHH-HHhhc
Q 024315          247 EVGVHVWYRFELAETWR-ITKWL  268 (269)
Q Consensus       247 e~~id~~~~~~~~~~~~-i~~~~  268 (269)
                      .++||++  .+++++.. |.+||
T Consensus       149 ~~~id~~--~~~e~v~~~i~~~l  169 (171)
T d1knqa_         149 VLVVDID--QPLEGVVASTIEVI  169 (171)
T ss_dssp             EEEEECS--SCHHHHHHHHHHHH
T ss_pred             EEEEeCC--CCHHHHHHHHHHHh
Confidence            3778874  57888887 88776

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=2.1e-14  Score=126.39  Aligned_cols=132  Identities=14%  Similarity=0.187  Sum_probs=85.7

Q ss_pred             eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC----ccc-----ccCC--C--CChhh
Q 024315           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR----HGL-----NRDL--S--FKAED  155 (269)
Q Consensus        89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~----~~l-----~~~~--g--~~~~~  155 (269)
                      ....++++|.+++|++++|+||||||||||+++|+|++ .+.+|.|.++|.-..    ..+     +..+  +  +....
T Consensus        49 ~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~-~p~~G~I~~~g~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~  127 (281)
T d1r0wa_          49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGEL-EASEGIIKHSGRVSFCSQFSWIMPGTIKENIIFGVSYDEYR  127 (281)
T ss_dssp             CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSS-CCSEEEEECCSCEEEECSSCCCCSEEHHHHHTTTSCCCHHH
T ss_pred             CeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCC-cCCCcEEEECCEEEEEeccccccCceeeccccccccccchH
Confidence            34578889999999999999999999999999999988 577999999985211    001     0111  1  11111


Q ss_pred             HHHHHHHHHHHHHHHHhC--Cccee----eccCChHHHHH-HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHH
Q 024315          156 RVENIRRIGEVAKLFADA--GVICI----ACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL  224 (269)
Q Consensus       156 ~~~~~~~l~~~a~~~~~~--g~~~i----v~~~~~~~~~r-~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~  224 (269)
                      .....+.. .....+...  +....    ...+++++++| ..+|+++.++++  +++|+|+..++....+.+.+.
T Consensus       128 ~~~~~~~~-~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~i--llLDEPts~LD~~~~~~i~~~  200 (281)
T d1r0wa_         128 YKSVVKAC-QLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADL--YLLDSPFGYLDVFTEEQVFES  200 (281)
T ss_dssp             HHHHHHHT-TCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSE--EEEESCCCSSCHHHHHHHHHH
T ss_pred             HHHHHHHH-HhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccc--hhhcCccccCCHHHHHHHHHH
Confidence            11111111 111111111  11111    12357777777 699999999999  999999999998776666544

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.46  E-value=2.8e-14  Score=109.41  Aligned_cols=109  Identities=11%  Similarity=0.126  Sum_probs=85.6

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHHhhcc-CC-ccEEEECCeecCcccccCCCCChhhHHHHHHHHHHHHHHHHhCCcc
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQALHW-RG-KLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVI  176 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~-~~-~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~l~~~a~~~~~~g~~  176 (269)
                      -++|-+++++|.+||||||++++|.-.|.. .| +..-+|+|++++                   +++.++..+...   
T Consensus         3 ~kqgf~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll~~~ni~-------------------ri~fva~e~~k~---   60 (122)
T d1g8fa3           3 PKQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNNKT-------------------ELLSLIQDFIGS---   60 (122)
T ss_dssp             GGCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTTCH-------------------HHHTTHHHHHHT---
T ss_pred             CccceEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEecCCCHH-------------------HHHHHHHHHHhc---
Confidence            368999999999999999999999877755 33 556678887664                   334444444332   


Q ss_pred             eeeccCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCccccccccccccCCCCCCCeEEEcCCCc
Q 024315          177 CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEVGVHVWYRF  256 (269)
Q Consensus       177 ~iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~~i~~~~e~p~~~e~~id~~~~~  256 (269)
                                            ..++.+....|.+.|+.|+++++|                .|+.|.+||++|||+ ..
T Consensus        61 ----------------------G~~~iv~~~~p~e~~~~~d~~g~y----------------~~~~~~npDLvIdT~-~~  101 (122)
T d1g8fa3          61 ----------------------GSGLIIPDQWEDDKDSVVGKQNVY----------------LLDTSSSADIQLESA-DE  101 (122)
T ss_dssp             ----------------------TCEEEESSCCCGGGGGGSCCTTEE----------------EEESSTTCSEECSST-TC
T ss_pred             ----------------------CCEEEEecCCcHHHHHhcCCCCeE----------------EecCCCCCCeEEECC-CC
Confidence                                  346667889999999999998887                479999999999995 88


Q ss_pred             CHHHHHH-HHhhc
Q 024315          257 ELAETWR-ITKWL  268 (269)
Q Consensus       257 ~~~~~~~-i~~~~  268 (269)
                      ++++|+. |+.+|
T Consensus       102 sVee~V~qII~yL  114 (122)
T d1g8fa3         102 PISHIVQKVVLFL  114 (122)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            8999988 88776

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=5e-14  Score=120.56  Aligned_cols=132  Identities=17%  Similarity=0.192  Sum_probs=85.4

Q ss_pred             eccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcc----c-------c--cCCCCCh--hh
Q 024315           91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----L-------N--RDLSFKA--ED  155 (269)
Q Consensus        91 ~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~----l-------~--~~~g~~~--~~  155 (269)
                      +...+||.+++|++++|+||||||||||+++|+++.  +++|.|.++|.++...    +       .  ....+..  .+
T Consensus        14 ~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~--~~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   91 (231)
T d1l7vc_          14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT--SGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWH   91 (231)
T ss_dssp             TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC--CCSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHHH
T ss_pred             eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC--CCceEEEECCEECCcCCHHHHHhhceeeeccccCCccccHHH
Confidence            456789999999999999999999999999999964  4689999999886431    0       0  0011111  11


Q ss_pred             HHHHH----HHHHHHHHHHHhCCcce----eeccCChHHHHH-HHHHHhCC-------CCCccEEEEeCChhHHHhcChh
Q 024315          156 RVENI----RRIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLP-------EGDFIEVFMDVPLQVCEARDPK  219 (269)
Q Consensus       156 ~~~~~----~~l~~~a~~~~~~g~~~----iv~~~~~~~~~r-~~ar~ll~-------~~~~~~i~ld~p~~~l~~R~~k  219 (269)
                      .....    .+...+.......++..    .+...++++++| ..+++++.       +|++  +++|||+..++....+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~l--lllDEPt~gLD~~~~~  169 (231)
T d1l7vc_          92 YLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQL--LLLDEPMNSLDVAQQS  169 (231)
T ss_dssp             HHHHHCSCTTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCE--EEESSCSTTCCHHHHH
T ss_pred             HhhhccchhhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCE--EEEcCCCCCCCHHHHH
Confidence            10000    00011112222233322    234567777777 57888874       4467  9999999999998887


Q ss_pred             hHHHHHh
Q 024315          220 GLYKLAR  226 (269)
Q Consensus       220 ~l~~~~r  226 (269)
                      .+++.++
T Consensus       170 ~i~~~i~  176 (231)
T d1l7vc_         170 ALDKILS  176 (231)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7765544

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.27  E-value=1.6e-12  Score=103.91  Aligned_cols=159  Identities=13%  Similarity=0.049  Sum_probs=89.5

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCC-----CCChhhHHHHHHHHHHHHHHHHhCCc
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDL-----SFKAEDRVENIRRIGEVAKLFADAGV  175 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~-----g~~~~~~~~~~~~l~~~a~~~~~~g~  175 (269)
                      .|++|+|+|++||||||+++.|++.+.   ...+.++++.++..+....     ....+.....+.........+...+.
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~lg---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLPG---VPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQIAADVAGRYAKEGY   79 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCSS---SCEEEECTTHHHHTCCSSCCCTTSSSHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC---CCEEEecHHHHHHHHhcCCcccccchhhhHHHHHHHHHHHHHHHHHhcCC
Confidence            589999999999999999999998774   3467889987765433221     12223333333344444455555565


Q ss_pred             ceeeccCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCccccccccccccCCCCC-CCeEEEcCC
Q 024315          176 ICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLN-CEVGVHVWY  254 (269)
Q Consensus       176 ~~iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~~i~~~~e~p~~-~e~~id~~~  254 (269)
                      ..++..... ...+......  ...+..++++++.+.+.+|..++-..  ..........+.+.|+.+.. .+.+|||+ 
T Consensus        80 ~vi~~~~~~-~~~~~~~~~~--~~~~~~i~l~~~~e~~~~R~~~R~~~--~~~~~~~~~~~~~~~~~~~~~~~~~idt~-  153 (176)
T d1zp6a1          80 FVILDGVVR-PDWLPAFTAL--ARPLHYIVLRTTAAEAIERCLDRGGD--SLSDPLVVADLHSQFADLGAFEHHVLPVS-  153 (176)
T ss_dssp             EEEECSCCC-TTTTHHHHTT--CSCEEEEEEECCHHHHHHHHHTTCTT--SCCCHHHHHHHHHHTTCCGGGGGGEEECT-
T ss_pred             CeEeccccc-HHHHHHHHhc--ccccccccCCCCHHHHHHHHHhCCCc--cccchhhHHHHHHHHhhcccccCEEEECC-
Confidence            555443321 1222222222  22345589999999999887443110  00001111122233332222 35789995 


Q ss_pred             CcCHHHHHH-HHhhc
Q 024315          255 RFELAETWR-ITKWL  268 (269)
Q Consensus       255 ~~~~~~~~~-i~~~~  268 (269)
                      ..+++++.. |.++|
T Consensus       154 ~~~~ee~~~~I~~~l  168 (176)
T d1zp6a1         154 GKDTDQALQSAINAL  168 (176)
T ss_dssp             TCCTTTTTTTTHHHH
T ss_pred             CCCHHHHHHHHHHHH
Confidence            666777776 66654

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.25  E-value=3.7e-12  Score=103.67  Aligned_cols=131  Identities=15%  Similarity=0.085  Sum_probs=86.1

Q ss_pred             ceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHHHHHHHHHHHHHhCCc
Q 024315           96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGV  175 (269)
Q Consensus        96 sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~l~~~a~~~~~~g~  175 (269)
                      .+..+++.+|.++|++||||||+++.|+..+     +.+.++.|+++.            +    ..+.+........|.
T Consensus         8 ~~~~~~p~liil~G~pGsGKST~a~~l~~~~-----~~~~i~~D~~~~------------~----~~~~~~~~~~l~~g~   66 (172)
T d1yj5a2           8 SLLSPNPEVVVAVGFPGAGKSTFIQEHLVSA-----GYVHVNRDTLGS------------W----QRCVSSCQAALRQGK   66 (172)
T ss_dssp             CSSCSSCCEEEEECCTTSSHHHHHHHHTGGG-----TCEEEEHHHHCS------------H----HHHHHHHHHHHHTTC
T ss_pred             ccCCCCCEEEEEECCCCCCHHHHHHHHHHhc-----CCEEEchHHHHH------------H----HHHHHHHHHHHHCCC
Confidence            3445788999999999999999999886644     356777777651            1    112233333446688


Q ss_pred             ceeeccCChHHHHHHHHHHhCCC--CCccEEEEeCChhHHHhcChhhHHHHHhcCcccc--ccccccccCCCCCCC
Q 024315          176 ICIACLISPYRKDRDACRSMLPE--GDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKG--FTGIDDPYEPPLNCE  247 (269)
Q Consensus       176 ~~iv~~~~~~~~~r~~ar~ll~~--~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~--~~~i~~~~e~p~~~e  247 (269)
                      .++++.......+|....+++.+  .++..+++++|.++|.+|+.++-........+..  +......||+|...|
T Consensus        67 ~vIiD~t~~~~~~R~~~~~~a~~~~~~~~~v~l~~~~e~~~~Rn~~R~~~~~~~~~v~~~~~~~~~~~fe~P~~~E  142 (172)
T d1yj5a2          67 RVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREMTDPSHAPVSDMVMFSYRKQFEPPTLAE  142 (172)
T ss_dssp             CEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHCCCCCGGG
T ss_pred             CceeeCcCCCHHHHHHHHHHHHhcCCCEEEEEeCCCHHHHHHHHHHhcccCcccCccHHHHHHHHHHhCCCCCccc
Confidence            88888887777777666555543  3556689999999999998666432211111211  333446799998665

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=99.22  E-value=3.1e-11  Score=95.43  Aligned_cols=156  Identities=13%  Similarity=0.039  Sum_probs=90.1

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhh---HHHHHHHHHHHHHHHHhCCcceee
Q 024315          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED---RVENIRRIGEVAKLFADAGVICIA  179 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~---~~~~~~~l~~~a~~~~~~g~~~iv  179 (269)
                      .+|+|+|++||||||+++.|++.+.    ..++++++.++..+..........   .......+......+...+...++
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii   78 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLD----NSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDLTVNFLLAQNDVVL   78 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSS----SEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcC----CCEEEehHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence            5789999999999999999999874    356788888765444332222221   122233333444445556666665


Q ss_pred             ccCChHHHHH---HHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCccccccccccccCCCCCCCeEEEcCCCc
Q 024315          180 CLISPYRKDR---DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEVGVHVWYRF  256 (269)
Q Consensus       180 ~~~~~~~~~r---~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~~i~~~~e~p~~~e~~id~~~~~  256 (269)
                      +........+   ..+........+..+++++|.+.+.+|..++-.....  ....+....+.++......++|||+ ..
T Consensus        79 d~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~--~~~~~~~~~~~~~~~~~~~~~id~~-~~  155 (176)
T d2bdta1          79 DYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDEQM--GERCLELVEEFESKGIDERYFYNTS-HL  155 (176)
T ss_dssp             ESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC------CGGGGHHHHHHHHTTCCTTSEEECS-SS
T ss_pred             ccccccHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHHhCCCchhh--hHHHHHHHHHHHhCCCCCeEEEECC-CC
Confidence            5443332222   3334444444555689999999999998665321111  0111222223333444567889995 56


Q ss_pred             CHHHHHHHH
Q 024315          257 ELAETWRIT  265 (269)
Q Consensus       257 ~~~~~~~i~  265 (269)
                      .++++..++
T Consensus       156 ~~~~~~~~I  164 (176)
T d2bdta1         156 QPTNLNDIV  164 (176)
T ss_dssp             CGGGHHHHH
T ss_pred             CHHHHHHHH
Confidence            677777733

>d1zunb2 b.44.1.1 (B:330-434) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain 3-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: All beta proteins
fold: Elongation factor/aminomethyltransferase common domain
superfamily: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
family: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain 3-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.03  E-value=4.8e-11  Score=89.57  Aligned_cols=50  Identities=8%  Similarity=0.139  Sum_probs=46.4

Q ss_pred             CCCcccCCCcceeeeeeccccc--Cccccccccceeeccccccccccchhhhccccccccccc
Q 024315           12 TRPAICSPSLAEVDFRTSVKMS--GFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQ   72 (269)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~f~~idr~~~~~~~~~~~~~~~~~gagmi~   72 (269)
                      ++..|.+||||+|+|.+++|++  +|.+|+.||+|++||+.+|.           |+|+|||.
T Consensus        53 ~~~~l~~Ndi~~v~i~~~~~i~~d~y~~n~~~G~fiLiD~~~~~-----------TvaaG~I~  104 (105)
T d1zunb2          53 PASSLQLNEIGRVKVSLDAPIALDGYSSNRTTGAFIVIDRLTNG-----------TVAAGMII  104 (105)
T ss_dssp             CCSCBCTTCEEEEEEEEEEEEECCCTTTCTTTTEEEEECTTTCC-----------EEEEEEEE
T ss_pred             cccccCCccEEEEEEEECCccccCccccCcCceeEEEEECCCCC-----------EEEEEEEE
Confidence            4566999999999999999999  99999999999999999987           99999984

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.98  E-value=6.2e-10  Score=86.79  Aligned_cols=114  Identities=21%  Similarity=0.155  Sum_probs=64.9

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCccccc-----CCCCChhhHHHHHHHHHHHHHHHHhCCc--
Q 024315          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNR-----DLSFKAEDRVENIRRIGEVAKLFADAGV--  175 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~-----~~g~~~~~~~~~~~~l~~~a~~~~~~g~--  175 (269)
                      ++|+|+|++||||||+++.|....    .+...++.++++..+..     ...+......................+.  
T Consensus         3 klIii~G~pGsGKTTla~~L~~~~----~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAKN----PGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSV   78 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS----TTEEEECHHHHHHHHTTSCCGGGCCCCHHHHHHHHHHHHHHHHHHHTSCSSC
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC----CCCEEechHHHHHHHhcccchhhhhhhhhhhHHHHHHHHHHHHHHHHhhccC
Confidence            578999999999999999987643    24678888877643221     1122222222222222233333333332  


Q ss_pred             -ceeeccCChHHHHHHHHHHhCCC--CCccEEEEeCChhHHHhcChhh
Q 024315          176 -ICIACLISPYRKDRDACRSMLPE--GDFIEVFMDVPLQVCEARDPKG  220 (269)
Q Consensus       176 -~~iv~~~~~~~~~r~~ar~ll~~--~~~~~i~ld~p~~~l~~R~~k~  220 (269)
                       ..+++........+....+++..  .++..|++++|.++|.+|+.++
T Consensus        79 ~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R  126 (152)
T d1ly1a_          79 KGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKR  126 (152)
T ss_dssp             CEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTC
T ss_pred             CCcccccccCCHHHHHHHHHhhhhhccchhhhhcCCCHHHHHHHHHcc
Confidence             34554444333444333333222  3456689999999999987554

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=98.98  E-value=2.2e-11  Score=95.17  Aligned_cols=149  Identities=17%  Similarity=0.097  Sum_probs=67.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHH-----HHHHHHHHHHHHHHhCCccee
Q 024315          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRV-----ENIRRIGEVAKLFADAGVICI  178 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~-----~~~~~l~~~a~~~~~~g~~~i  178 (269)
                      .|+|+|++||||||+++.|+..|.-+     +++.+.......   +.......     .....+..............+
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L~~~-----~id~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQLNME-----FYDSDQEIEKRT---GADVGWVFDLEGEEGFRDREEKVINELTEKQGIV   75 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTTCE-----EEEHHHHHHHHH---TSCHHHHHHHHHHHHHHHHHHHHHHHHHTSSSEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCC-----eEeechhHHhhh---cccccchhhhhhhhHHHHHHHHHHHhhccccceE
Confidence            58899999999999999999998532     455554432111   11111111     111111111112222222222


Q ss_pred             eccCCh---HHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCccccccc-------cccccCCCCCCCe
Q 024315          179 ACLISP---YRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTG-------IDDPYEPPLNCEV  248 (269)
Q Consensus       179 v~~~~~---~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~~~-------i~~~~e~p~~~e~  248 (269)
                      ......   ..........   .  ...+++..++..+..|..++...............       ....|+.  .+++
T Consensus        76 ~~~~~~~~~~~~~~~~l~~---~--~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~--~~d~  148 (169)
T d1kaga_          76 LATGGGSVKSRETRNRLSA---R--GVVVYLETTIEKQLARTQRDKKRPLLHVETPPREVLEALANERNPLYEE--IADV  148 (169)
T ss_dssp             EECCTTGGGSHHHHHHHHH---H--SEEEECCCCHHHHHSCC------CCSSSSCCCHHHHHHHHHHHHHHHHH--HCSE
T ss_pred             eeccchhhhhhhhhHHhhh---c--ceeeeccCcHHHhhhHhhhccccchhcccccchhHHHHHHHHhhhhhhc--cCCE
Confidence            222111   1111122221   1  13378888999988887554321111111000111       1122332  2579


Q ss_pred             EEEcCCCcCHHHHHH-HHhhc
Q 024315          249 GVHVWYRFELAETWR-ITKWL  268 (269)
Q Consensus       249 ~id~~~~~~~~~~~~-i~~~~  268 (269)
                      +|||+ ..++++++. |.+||
T Consensus       149 ~Idt~-~~s~ee~v~~Ii~~l  168 (169)
T d1kaga_         149 TIRTD-DQSAKVVANQIIHML  168 (169)
T ss_dssp             EC------CHHHHHHHHHHHH
T ss_pred             EEECC-CCCHHHHHHHHHHHh
Confidence            99995 678999998 99887

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=98.73  E-value=3.9e-09  Score=84.07  Aligned_cols=146  Identities=24%  Similarity=0.285  Sum_probs=75.6

Q ss_pred             EEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHH-----HHHHHHH-HHHHHHHhCCccee
Q 024315          105 IWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRV-----ENIRRIG-EVAKLFADAGVICI  178 (269)
Q Consensus       105 i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~-----~~~~~l~-~~a~~~~~~g~~~i  178 (269)
                      |+|+|++||||||+++.|+..|.-     -++|.|.+..   ...+.+..+..     ..++... .+...+...+..++
T Consensus         3 I~liG~~GsGKsTi~k~La~~l~~-----~~~d~d~~ie---~~~g~~i~~~~~~~g~~~~r~~e~~v~~~l~~~~~~v~   74 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDLDL-----VFLDSDFLIE---QKFNQKVSEIFEQKRENFFREQEQKMADFFSSCEKACI   74 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHTC-----EEEEHHHHHH---HHHTSCHHHHHHHHCHHHHHHHHHHHHHHHTTCCSEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCC-----CEEecCchhh---hHHhhhhhhHHHhhhhccchhhhhhhchhhhhcccccc
Confidence            788999999999999999999853     3677665421   11133332221     1122221 22223333333333


Q ss_pred             eccCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHH---Hhc-Ccccccccc-ccccCCCCCCCeEEEcC
Q 024315          179 ACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL---ARE-GKVKGFTGI-DDPYEPPLNCEVGVHVW  253 (269)
Q Consensus       179 v~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~---~r~-g~~~~~~~i-~~~~e~p~~~e~~id~~  253 (269)
                      . ...+.. .    ...+.+..+ .||+++|++.+.+|..++-+..   ..+ ..++.+... ...|+.  .++++|||+
T Consensus        75 ~-~~g~~~-~----~~~l~~~~~-vI~L~~s~~~l~~Rl~~~~~~~Rp~~~~~~~~~~l~~~r~~~Y~~--~ad~~Idt~  145 (161)
T d1viaa_          75 A-TGGGFV-N----VSNLEKAGF-CIYLKADFEYLKKRLDKDEISKRPLFYDEIKAKKLYNERLSKYEQ--KANFILNIE  145 (161)
T ss_dssp             E-CCTTGG-G----STTGGGGCE-EEEEECCHHHHTTCCCGGGTTTSCTTCCHHHHHHHHHHHHHHHHH--HCSEEEECT
T ss_pred             c-cccchh-h----HHHHHhCCe-EEEeccchHHHHHHHccccccccccccCchHHHHHHHHHHHHHHh--hCCEEEECC
Confidence            2 222211 1    112222233 3899999999999974431100   000 001111111 123432  258999995


Q ss_pred             CCcCHHHHHH-HHhhc
Q 024315          254 YRFELAETWR-ITKWL  268 (269)
Q Consensus       254 ~~~~~~~~~~-i~~~~  268 (269)
                       ..+++++.. |.++|
T Consensus       146 -~~s~eei~~~I~~~i  160 (161)
T d1viaa_         146 -NKNIDELLSEIKKVI  160 (161)
T ss_dssp             -TCCHHHHHHHHHHHH
T ss_pred             -CCCHHHHHHHHHHHh
Confidence             567888888 87765

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=98.66  E-value=1.1e-08  Score=80.77  Aligned_cols=28  Identities=39%  Similarity=0.623  Sum_probs=25.4

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      ++|-.|+|+|++||||||+++.|+..+.
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l~   30 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAELD   30 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence            5678899999999999999999999874

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=98.66  E-value=4.5e-09  Score=84.13  Aligned_cols=34  Identities=29%  Similarity=0.474  Sum_probs=28.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~  142 (269)
                      .|.|+|++||||||+++.|+..|.-     -++|+|.+.
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~Lg~-----~~id~D~~i   37 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARALGY-----EFVDTDIFM   37 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHHTC-----EEEEHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCC-----CEEehhhhh
Confidence            4678999999999999999998853     378877653

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.64  E-value=2.2e-09  Score=85.56  Aligned_cols=148  Identities=22%  Similarity=0.221  Sum_probs=75.1

Q ss_pred             EEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHH-----HHHHHHH-H-HHHHHHhCCcce
Q 024315          105 IWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRV-----ENIRRIG-E-VAKLFADAGVIC  177 (269)
Q Consensus       105 i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~-----~~~~~l~-~-~a~~~~~~g~~~  177 (269)
                      |+|+|++||||||+++.|+..|.-+     ++|.|..-.   ...+.+..+..     ..++... + +...........
T Consensus         4 IvliG~~G~GKSTig~~La~~l~~~-----fiD~D~~ie---~~~g~~i~~~~~~~g~~~~r~~e~~~~~~~~~~~~~vi   75 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKALGVG-----LLDTDVAIE---QRTGRSIADIFATDGEQEFRRIEEDVVRAALADHDGVL   75 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHTCC-----EEEHHHHHH---HHHSSCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCSEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCC-----eEeeccchh---hhhhhhhhhhhhhhhHHHHHHHHhhhhhhccccccccc
Confidence            5577999999999999999999644     677665321   01133333221     1112211 1 122233323222


Q ss_pred             eeccCChHHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHH-HHhcCcc-ccccccc----cccCCCCCCCeEEE
Q 024315          178 IACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK-LAREGKV-KGFTGID----DPYEPPLNCEVGVH  251 (269)
Q Consensus       178 iv~~~~~~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~-~~r~g~~-~~~~~i~----~~~e~p~~~e~~id  251 (269)
                      ....+....   ...+.++.+..+  ||++++.+.+.+|..++-.+ ....... +.+..+.    ..|+..  ++++||
T Consensus        76 ~~gg~~~~~---~~~~~~l~~~~~--I~L~~~~~~~~~R~~~~~~Rpll~~~~~~e~~~~l~~eR~~~Y~~~--ad~~Id  148 (165)
T d2iyva1          76 SLGGGAVTS---PGVRAALAGHTV--VYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRAPLYRRV--ATMRVD  148 (165)
T ss_dssp             ECCTTGGGS---HHHHHHHTTSCE--EEEECCHHHHHHHTTCCCCCSSTTSCCHHHHHHHHHHHHHHHHHHH--CSEEEE
T ss_pred             ccccccccc---ccccccccccce--eeeeccchhhhhcccccccchhccCccHHHHHHHHHHHHHHHHHhh--CCEEEE
Confidence            221111211   123334444333  89999999999887432100 0000000 0011111    124322  679999


Q ss_pred             cCCCcCHHHHHH-HHhhc
Q 024315          252 VWYRFELAETWR-ITKWL  268 (269)
Q Consensus       252 ~~~~~~~~~~~~-i~~~~  268 (269)
                      |+ ..+++++.. |.+.|
T Consensus       149 t~-~~s~~ei~~~Ii~~L  165 (165)
T d2iyva1         149 TN-RRNPGAVVRHILSRL  165 (165)
T ss_dssp             CS-SSCHHHHHHHHHTTS
T ss_pred             CC-CCCHHHHHHHHHhcC
Confidence            95 678999887 87754

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.62  E-value=2.2e-08  Score=81.49  Aligned_cols=116  Identities=15%  Similarity=0.094  Sum_probs=70.4

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCC-------CChhhHHH---HH-HHHHH-HHHH
Q 024315          102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLS-------FKAEDRVE---NI-RRIGE-VAKL  169 (269)
Q Consensus       102 g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g-------~~~~~~~~---~~-~~l~~-~a~~  169 (269)
                      +.+|+++|++||||||+++.|++.+...+..+..+++|..+..+.....       ........   .. ..+.. ...+
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKFL   81 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEcccceehhhccccccccccccccccchhhHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999988766666778888877643322111       11111111   11 11111 1123


Q ss_pred             HHhCCcceeeccCChHHHHHHHHHHhCCCC--CccEEEEeCChhHHHhcC
Q 024315          170 FADAGVICIACLISPYRKDRDACRSMLPEG--DFIEVFMDVPLQVCEARD  217 (269)
Q Consensus       170 ~~~~g~~~iv~~~~~~~~~r~~ar~ll~~~--~~~~i~ld~p~~~l~~R~  217 (269)
                      ....+..++++...+...+|..+.+++...  .++.+.+.++.+.+.++.
T Consensus        82 ~~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (213)
T d1bifa1          82 SEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAAN  131 (213)
T ss_dssp             HTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHH
T ss_pred             HhcCCCEEEeecCCccHHHHHHHHHHHHhcCCeEEEEEeeccHHHHHHHh
Confidence            334566677777777778887777665432  333356677777665443

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.40  E-value=8.7e-08  Score=76.74  Aligned_cols=24  Identities=25%  Similarity=0.216  Sum_probs=21.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhc
Q 024315          104 VIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      .|+|+||+||||||+++.|+..+.
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~~   25 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKYG   25 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            467899999999999999999884

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.38  E-value=5.2e-07  Score=73.08  Aligned_cols=28  Identities=29%  Similarity=0.412  Sum_probs=24.8

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      .+-.+|+|+||+||||||+++.|+..+.
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~~~g   33 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVKDYS   33 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4566899999999999999999999874

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.36  E-value=4e-08  Score=79.58  Aligned_cols=26  Identities=23%  Similarity=0.289  Sum_probs=23.2

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          102 GCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       102 g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      +-.|+|.||+||||||+++.|+..+.
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~~~~   28 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKTKYQ   28 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHC
Confidence            44688999999999999999999885

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.33  E-value=4.4e-07  Score=73.58  Aligned_cols=157  Identities=15%  Similarity=0.091  Sum_probs=81.7

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee-cCcccccC-------------CCCChhhHHHHHHHHH
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN-CRHGLNRD-------------LSFKAEDRVENIRRIG  164 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~-~~~~l~~~-------------~g~~~~~~~~~~~~l~  164 (269)
                      +.++.+|+|+||+||||||+++.|+..+.     ...++..+ ++......             -.+.+.+...  ..+.
T Consensus         5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~g-----~~~is~g~llr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~   77 (194)
T d3adka_           5 LKKSKIIFVVGGPGSGKGTQCEKIVQKYG-----YTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLETVL--DMLR   77 (194)
T ss_dssp             HHTSCEEEEEECTTSSHHHHHHHHHHHTC-----CEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHH--HHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHhC-----CeeEeccHHHHHHHHHhHhhhhhhHHHHhhccCCchheee--eehh
Confidence            46788999999999999999999999874     23455433 33211110             0111111111  0110


Q ss_pred             HHHHHHHhCC-cceeeccCCh-HHHHHHHHHHhCCCCCccEEEEeCChhHHHhcChhhHHHHHhcCccccc--------c
Q 024315          165 EVAKLFADAG-VICIACLISP-YRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGF--------T  234 (269)
Q Consensus       165 ~~a~~~~~~g-~~~iv~~~~~-~~~~r~~ar~ll~~~~~~~i~ld~p~~~l~~R~~k~l~~~~r~g~~~~~--------~  234 (269)
                      .  .+..... ...++..+.| ...+.......+..+.+ .++++++.+.+..|...+.....|.......        .
T Consensus        78 ~--~l~~~~~~~~g~ildg~pr~~~qa~~~~~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~r~~d~~e~i~~R~~~y~  154 (194)
T d3adka_          78 D--AMVAKVDTSKGFLIDGYPREVKQGEEFERKIGQPTL-LLYVDAGPETMTKRLLKRGETSGRVDDNEETIKKRLETYY  154 (194)
T ss_dssp             H--HHHTTTTTCSCEEEESCCSSHHHHHHHHHHTCCCSE-EEEEECCHHHHHHHHHHHHHHHTCCCCCSTTHHHHHHHHH
T ss_pred             h--hhhhcccccccceeeeccchhHHHHHHHHHhCCccc-hhccccchhhhHhHhhhhcccccCCcchHHHHHHHHHHHH
Confidence            0  1111111 1112222222 23444555565655433 3799999999998876655434333322211        1


Q ss_pred             ----ccccccCCCCCCCeEEEcCCCcCHHHHHH-HHhhc
Q 024315          235 ----GIDDPYEPPLNCEVGVHVWYRFELAETWR-ITKWL  268 (269)
Q Consensus       235 ----~i~~~~e~p~~~e~~id~~~~~~~~~~~~-i~~~~  268 (269)
                          .+-+.|+... .-..||+  ..++++++. |.++|
T Consensus       155 ~~~~~~~~~y~~~~-~~~~Id~--~~s~~eV~~~I~~~i  190 (194)
T d3adka_         155 KATEPVIAFYEKRG-IVRKVNA--EGSVDDVFSQVCTHL  190 (194)
T ss_dssp             HHTHHHHHHHTTTT-CEEEEEC--CSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcC-CEEEEEC--CCCHHHHHHHHHHHH
Confidence                1113354332 2246776  458889888 77765

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=98.30  E-value=1.1e-07  Score=74.49  Aligned_cols=24  Identities=38%  Similarity=0.482  Sum_probs=21.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhc
Q 024315          104 VIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      .|+|+|++||||||+++.|+..+.
T Consensus         6 ~I~i~G~pGsGKTTia~~La~~l~   29 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELASKSG   29 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            367999999999999999999885

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.25  E-value=1.3e-06  Score=70.46  Aligned_cols=28  Identities=29%  Similarity=0.462  Sum_probs=25.6

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      .++.+|+|+||+||||||+++.|+..+.
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~~~g   31 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVRDFG   31 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence            5678999999999999999999999874

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.20  E-value=3.3e-07  Score=72.51  Aligned_cols=34  Identities=29%  Similarity=0.359  Sum_probs=28.0

Q ss_pred             EEEEcCCCChHHHHHHHHHHhhccCCccEEEECCe
Q 024315          105 IWITGLSGSGKSTLACALSQALHWRGKLTYILDGD  139 (269)
Q Consensus       105 i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~  139 (269)
                      ++|+||||||||||++.|++.+.. ..|.+.+.+.
T Consensus         3 i~I~G~~G~GKSTLl~~i~~~l~~-~~g~~~~~~~   36 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVERLGK-RAIGFWTEEV   36 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHGG-GEEEEEEEEE
T ss_pred             EEEECCCCcHHHHHHHHHHhcCCC-CcceEEECCc
Confidence            789999999999999999999954 4566666553

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=98.17  E-value=1.3e-06  Score=68.65  Aligned_cols=34  Identities=24%  Similarity=0.285  Sum_probs=27.4

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhhccCCccEEEE
Q 024315          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYIL  136 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l  136 (269)
                      .+|+|.|++||||||+++.|+..|...+.....+
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~~   35 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMV   35 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEE
Confidence            6899999999999999999999986554333333

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=1.1e-05  Score=66.34  Aligned_cols=37  Identities=32%  Similarity=0.478  Sum_probs=31.8

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEE
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL  136 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l  136 (269)
                      ++|.+|+|.|+.||||||+++.|...|...|..++++
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~   37 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL   37 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence            4789999999999999999999999987666656655

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.10  E-value=2e-06  Score=68.81  Aligned_cols=33  Identities=27%  Similarity=0.366  Sum_probs=25.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~  141 (269)
                      .|+|+|++||||||+++.|+..+.     ...++.+++
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~~g-----~~~i~~~d~   36 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQERFH-----AAHLATGDM   36 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHC-----CEEEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC-----CceEecccc
Confidence            367889999999999999999874     335555443

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=98.06  E-value=1.1e-06  Score=68.40  Aligned_cols=37  Identities=30%  Similarity=0.349  Sum_probs=29.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee
Q 024315          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~  140 (269)
                      +++|+|++|||||||++.|.+.+...|.....+..+.
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v~~~d~   40 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH   40 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEecccc
Confidence            7899999999999999999999876654444444443

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.95  E-value=3e-06  Score=67.48  Aligned_cols=43  Identities=40%  Similarity=0.431  Sum_probs=33.1

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~  141 (269)
                      -..+-+|+|.|++|||||||++.|...+...+-....++.++.
T Consensus        19 ~~~~~iIgI~G~~GSGKSTla~~L~~~l~~~~~~~~~~~~~~~   61 (198)
T d1rz3a_          19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDH   61 (198)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhccccccceecccccc
Confidence            3455689999999999999999999988766555555655443

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.88  E-value=7.4e-06  Score=65.13  Aligned_cols=24  Identities=33%  Similarity=0.506  Sum_probs=21.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhc
Q 024315          104 VIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      .|+|.||+||||||+++.|+..+.
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~g   25 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKLG   25 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            478999999999999999999884

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=3.7e-05  Score=61.39  Aligned_cols=26  Identities=23%  Similarity=0.415  Sum_probs=23.3

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          102 GCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       102 g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      +-+|+|.||+||||||+++.|+..+.
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~g   26 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKYG   26 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            34789999999999999999999884

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.84  E-value=3.2e-05  Score=62.04  Aligned_cols=23  Identities=48%  Similarity=0.515  Sum_probs=20.9

Q ss_pred             EEEEcCCCChHHHHHHHHHHhhc
Q 024315          105 IWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       105 i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      |+|+|||||||+||++.|...++
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~~   26 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            78999999999999999988764

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.80  E-value=5.8e-06  Score=64.58  Aligned_cols=26  Identities=31%  Similarity=0.348  Sum_probs=23.6

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          102 GCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       102 g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      ...|+|+|++|||||||++.|+..+.
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~~~   32 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAVFN   32 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            35799999999999999999999885

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.78  E-value=4.7e-05  Score=63.38  Aligned_cols=43  Identities=21%  Similarity=0.374  Sum_probs=35.4

Q ss_pred             ecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc
Q 024315           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH  143 (269)
Q Consensus        98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~  143 (269)
                      ..+.+..+.|.||+||||||++++|++.+.   .+.+.++.+.++.
T Consensus        28 ~~~~P~~ilL~GpPGtGKT~la~~la~~~~---~~~~~i~~d~~~~   70 (273)
T d1gvnb_          28 AVESPTAFLLGGQPGSGKTSLRSAIFEETQ---GNVIVIDNDTFKQ   70 (273)
T ss_dssp             CCSSCEEEEEECCTTSCTHHHHHHHHHHTT---TCCEEECTHHHHT
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHhh---cceEEEecHHHHH
Confidence            445677899999999999999999999875   3467888887763

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.77  E-value=6.8e-05  Score=61.90  Aligned_cols=47  Identities=28%  Similarity=0.447  Sum_probs=37.7

Q ss_pred             ceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315           96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (269)
Q Consensus        96 sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~  142 (269)
                      ++..+++.++.++||+|+||||.+-.|+..+...+....++..|..|
T Consensus         3 ~~~~~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R   49 (211)
T d2qy9a2           3 NVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFR   49 (211)
T ss_dssp             CCCSCTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTC
T ss_pred             CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeccccc
Confidence            34556788999999999999999999998886666667777777665

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.75  E-value=7.1e-05  Score=61.84  Aligned_cols=47  Identities=26%  Similarity=0.384  Sum_probs=35.9

Q ss_pred             ceecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315           96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (269)
Q Consensus        96 sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~  142 (269)
                      ++.-.++.+++++||+|+||||.+-.|+..+...+....++.-|..|
T Consensus         5 ~~~~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R   51 (213)
T d1vmaa2           5 NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR   51 (213)
T ss_dssp             CCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred             cCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecccc
Confidence            44557888999999999999999888888776555555566555554

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.74  E-value=1.1e-05  Score=63.30  Aligned_cols=36  Identities=25%  Similarity=0.138  Sum_probs=29.1

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECC
Q 024315          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG  138 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g  138 (269)
                      .+++|+|.+|||||||+..|.+.|...|.....+..
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~   37 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKH   37 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEe
Confidence            378999999999999999999999776654445533

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.73  E-value=2.6e-05  Score=62.88  Aligned_cols=25  Identities=28%  Similarity=0.436  Sum_probs=22.2

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          103 CVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      -.|.|+||+||||||+++.|+..+.
T Consensus         7 mrIiliG~PGSGKtT~a~~La~~~g   31 (189)
T d2ak3a1           7 LRAAIMGAPGSGKGTVSSRITKHFE   31 (189)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHBC
T ss_pred             eeEEEECCCCCCHHHHHHHHHHHHC
Confidence            3577899999999999999999874

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.70  E-value=9.4e-06  Score=64.77  Aligned_cols=26  Identities=35%  Similarity=0.512  Sum_probs=23.9

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          102 GCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       102 g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      |.+++|+||||||||||++.|...++
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~   27 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIP   27 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence            78999999999999999999988764

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.69  E-value=7.7e-05  Score=61.55  Aligned_cols=44  Identities=27%  Similarity=0.351  Sum_probs=31.6

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~  142 (269)
                      .+++.++.|+||+|+||||.+-.|+..+...+....++.-|..|
T Consensus         9 ~k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R   52 (211)
T d1j8yf2           9 DKIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYR   52 (211)
T ss_dssp             SSSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeeccc
Confidence            36789999999999999999999998886666666677666555

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.61  E-value=2.2e-05  Score=61.67  Aligned_cols=34  Identities=29%  Similarity=0.413  Sum_probs=27.7

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhhccCCccEEEE
Q 024315          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYIL  136 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l  136 (269)
                      +++.|.|++||||||+++.|+..|...+.....+
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~~~~~~~~~~   35 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKII   35 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            4688999999999999999999997665444444

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=1.6e-05  Score=61.90  Aligned_cols=28  Identities=36%  Similarity=0.523  Sum_probs=24.3

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhhccCC
Q 024315          103 CVIWITGLSGSGKSTLACALSQALHWRG  130 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l~~~~  130 (269)
                      ..|.|+|++|+|||||++.+++.+...+
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~   29 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLKSSG   29 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHHCC
Confidence            3588999999999999999999986544

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=2.1e-05  Score=64.06  Aligned_cols=41  Identities=29%  Similarity=0.349  Sum_probs=30.8

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhccC-----CccEEEECCeec
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALHWR-----GKLTYILDGDNC  141 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~-----~~g~i~l~g~~~  141 (269)
                      ++-+|+|.|++||||||+++.|...+...     ......+..|+.
T Consensus         1 ~P~iIgI~G~~gSGKSTla~~L~~~l~~~~~~~~~~~~~vi~~D~y   46 (213)
T d1uj2a_           1 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSF   46 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhchhccccCCCceEEEecccc
Confidence            35689999999999999999999887532     123556666554

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.56  E-value=0.0001  Score=60.64  Aligned_cols=43  Identities=33%  Similarity=0.501  Sum_probs=35.3

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~  142 (269)
                      .++.+++++||+|+||||.+-.|+..+...+..+.++.-|..|
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R   46 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFR   46 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSS
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEecccc
Confidence            3578999999999999999999998876666667777777666

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.54  E-value=0.00018  Score=59.06  Aligned_cols=43  Identities=28%  Similarity=0.468  Sum_probs=35.7

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~  142 (269)
                      +++.++.|+||+|+||||.+..|+..+...+....++.-|..|
T Consensus         8 ~~~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R   50 (207)
T d1ls1a2           8 KDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR   50 (207)
T ss_dssp             CSSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeccccc
Confidence            3567899999999999999999998887677777788777666

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.54  E-value=2.5e-05  Score=62.44  Aligned_cols=28  Identities=32%  Similarity=0.419  Sum_probs=24.7

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      ++|-.|.|+||+||||||+++.|+..+.
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~~~g   28 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAKNFC   28 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3677788999999999999999999874

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.43  E-value=3.3e-05  Score=60.83  Aligned_cols=24  Identities=33%  Similarity=0.440  Sum_probs=21.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhc
Q 024315          104 VIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      .|+|+|++||||||+++.|+..+.
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~~   25 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAYG   25 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            378999999999999999999884

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.35  E-value=5.3e-05  Score=62.05  Aligned_cols=27  Identities=33%  Similarity=0.465  Sum_probs=24.4

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      +|.+++|+||||||||||.+.|....+
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~~p   27 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKTQP   27 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence            589999999999999999999988753

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.35  E-value=5.2e-05  Score=60.11  Aligned_cols=24  Identities=33%  Similarity=0.439  Sum_probs=22.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhc
Q 024315          104 VIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      .|+|+|++||||||+++.|+..+.
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~g   25 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKYG   25 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            478999999999999999999985

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=97.30  E-value=9.7e-05  Score=64.33  Aligned_cols=43  Identities=26%  Similarity=0.239  Sum_probs=33.4

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhcc--CCccEEEECCeecC
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALHW--RGKLTYILDGDNCR  142 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~--~~~g~i~l~g~~~~  142 (269)
                      +.+-+|+|.|++||||||+++.|...|..  .+..+..+..|+..
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F~  122 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL  122 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeeeE
Confidence            45779999999999999999999998852  23446666666654

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.27  E-value=7e-05  Score=60.46  Aligned_cols=24  Identities=54%  Similarity=0.724  Sum_probs=22.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhc
Q 024315          104 VIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      +|+|.||+||||||+++.|+..+.
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~g   28 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQ   28 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            889999999999999999999985

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.25  E-value=7.5e-05  Score=60.65  Aligned_cols=24  Identities=38%  Similarity=0.441  Sum_probs=22.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhc
Q 024315          104 VIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      +|+|-||+||||||+|+.|+..|.
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~lg   28 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDFG   28 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            578889999999999999999985

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.22  E-value=4e-05  Score=66.24  Aligned_cols=40  Identities=30%  Similarity=0.463  Sum_probs=30.3

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~  142 (269)
                      -+|+|+|+|||||||+++.|...+...+-....+.+|+..
T Consensus         5 pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsfy   44 (288)
T d1a7ja_           5 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH   44 (288)
T ss_dssp             CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCCC
Confidence            3899999999999999999999886544456788888764

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.18  E-value=0.00011  Score=59.47  Aligned_cols=31  Identities=32%  Similarity=0.436  Sum_probs=27.5

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhccCCc
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALHWRGK  131 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~  131 (269)
                      +|.+|+|-|+.||||||+++.|...|...|.
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L~~~g~   31 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETLEQLGI   31 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhCCC
Confidence            5889999999999999999999998865553

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.14  E-value=0.00018  Score=58.68  Aligned_cols=33  Identities=24%  Similarity=0.398  Sum_probs=26.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhccCCccEEEEC
Q 024315          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILD  137 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~  137 (269)
                      +++|+|+.|||||||++.|.+.+. .++....++
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~~-~~~~~~ivn   34 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVN   34 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHh-hCCeEEEEe
Confidence            689999999999999999998764 334455554

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.10  E-value=0.00062  Score=56.95  Aligned_cols=36  Identities=17%  Similarity=0.224  Sum_probs=28.1

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECC
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG  138 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g  138 (269)
                      .+..-+.|.||+|||||+++++|+..+..   ..+.++.
T Consensus        38 ~p~~~vLL~GppGtGKT~la~alA~~~~~---~~~~i~~   73 (246)
T d1d2na_          38 TPLVSVLLEGPPHSGKTALAAKIAEESNF---PFIKICS   73 (246)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHHHTC---SEEEEEC
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHhhcccc---ccccccc
Confidence            34456889999999999999999998753   3555554

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=97.07  E-value=0.00016  Score=57.47  Aligned_cols=24  Identities=50%  Similarity=0.558  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHH
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQ  124 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~  124 (269)
                      .+-+|+|+|++||||||+++.|..
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            466899999999999999999865

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.06  E-value=0.00015  Score=58.27  Aligned_cols=23  Identities=43%  Similarity=0.507  Sum_probs=20.8

Q ss_pred             EEEEcCCCChHHHHHHHHHHhhc
Q 024315          105 IWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       105 i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      |+|+||||||||||++.|...++
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~~   25 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEHS   25 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            67999999999999999988763

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.03  E-value=0.00012  Score=58.42  Aligned_cols=29  Identities=24%  Similarity=0.296  Sum_probs=26.0

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      ..++-+|+|-|..||||||+++.|.+.+.
T Consensus         6 ~~kp~~I~ieG~~GsGKTTl~~~L~~~l~   34 (197)
T d2vp4a1           6 GTQPFTVLIEGNIGSGKTTYLNHFEKYKN   34 (197)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            45778999999999999999999999874

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=0.00018  Score=57.33  Aligned_cols=24  Identities=17%  Similarity=0.274  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhh
Q 024315          103 CVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      ..++|+||||+||+||.+.|.+..
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhC
Confidence            578999999999999999998765

>d1jnya2 b.44.1.1 (A:323-429) Elongation factor eEF-1alpha, C-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: Elongation factor/aminomethyltransferase common domain
superfamily: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
family: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
domain: Elongation factor eEF-1alpha, C-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.99  E-value=0.00019  Score=52.67  Aligned_cols=49  Identities=10%  Similarity=0.112  Sum_probs=42.9

Q ss_pred             CCCcccCCCcceeeeeeccccc--Cccccccccceeeccccccccccchhhhcccccccccccc
Q 024315           12 TRPAICSPSLAEVDFRTSVKMS--GFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQN   73 (269)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~f~~idr~~~~~~~~~~~~~~~~~gagmi~~   73 (269)
                      .|..+..|+.+.|.|.+++|+.  +|.+++.+|+|++.|.  +.           |+|+|+|..
T Consensus        54 ~p~~l~~g~~a~v~i~~~~~i~~e~~~~~~~lGrfilrd~--g~-----------Tva~G~I~~  104 (107)
T d1jnya2          54 NPQFLKQGDVAIVKFKPIKPLCVEKYNEFPPLGRFAMRDM--GK-----------TVGVGIIVD  104 (107)
T ss_dssp             SCSCBCTTCEEEEEEEESSCEECCCTTTSGGGTEEEEEET--TE-----------EEEEEEEEE
T ss_pred             ccccccCCceEEEEEEcCCceEEeecccCCCcCCEEEEEC--Cc-----------eEEEEEEEE
Confidence            3445888999999999999998  9999999999999996  54           999998854

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.99  E-value=0.00028  Score=56.51  Aligned_cols=33  Identities=39%  Similarity=0.505  Sum_probs=27.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhccCCccEEEE
Q 024315          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYIL  136 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l  136 (269)
                      +|+|-|..||||||+++.|...|...|..++.+
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~~~g~~v~~~   34 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATL   34 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence            688999999999999999999987666555555

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.91  E-value=0.00033  Score=57.39  Aligned_cols=35  Identities=26%  Similarity=0.372  Sum_probs=26.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~  141 (269)
                      .+.|.||+|+||||+|++|+..+...   .+.+++...
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~~~~~---~~~~~~~~~   71 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASELQTN---IHVTSGPVL   71 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHHHTCC---EEEEETTTC
T ss_pred             eEEEECCCCCcHHHHHHHHHhccCCC---cccccCccc
Confidence            47799999999999999999988533   445555433

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.88  E-value=0.001  Score=55.98  Aligned_cols=41  Identities=20%  Similarity=0.285  Sum_probs=32.3

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~  142 (269)
                      ...+.-+.|.||+|||||+++++|+..+.   ...+.++..++.
T Consensus        42 ~~~~~~iLL~GppGtGKT~la~~iA~~~~---~~~~~i~~~~l~   82 (256)
T d1lv7a_          42 GKIPKGVLMVGPPGTGKTLLAKAIAGEAK---VPFFTISGSDFV   82 (256)
T ss_dssp             -CCCCEEEEECCTTSCHHHHHHHHHHHHT---CCEEEECSCSST
T ss_pred             CCCCCeEEeeCCCCCCccHHHHHHHHHcC---CCEEEEEhHHhh
Confidence            34556788999999999999999999885   346777776654

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.88  E-value=0.00033  Score=60.60  Aligned_cols=38  Identities=18%  Similarity=0.218  Sum_probs=29.7

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~  141 (269)
                      ++.-+.|+||+|+|||.||++|++.+..+   .+.++.-.+
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~~~~~---~~~i~~s~~   85 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKLANAP---FIKVEATKF   85 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHTCC---EEEEEGGGG
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhccccc---hhccccccc
Confidence            45566789999999999999999988633   566666544

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.83  E-value=0.00029  Score=55.38  Aligned_cols=28  Identities=18%  Similarity=0.278  Sum_probs=25.2

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      +++|+++.|.|++||||||++..++...
T Consensus        20 i~~G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          20 IETGSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            4789999999999999999999998654

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.82  E-value=0.0016  Score=52.98  Aligned_cols=40  Identities=20%  Similarity=0.250  Sum_probs=32.5

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECC
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG  138 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g  138 (269)
                      +++|.++.|.|++||||||++..++...-..+...+++.-
T Consensus        23 i~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~   62 (242)
T d1tf7a2          23 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAY   62 (242)
T ss_dssp             EESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhccccceeec
Confidence            4789999999999999999999998876545555666654

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.77  E-value=0.00078  Score=61.23  Aligned_cols=56  Identities=16%  Similarity=0.240  Sum_probs=38.5

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCcccccCCCCChhhHHHHHHHHHH
Q 024315          102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGE  165 (269)
Q Consensus       102 g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~~l~~~~g~~~~~~~~~~~~l~~  165 (269)
                      +.-+.++||+|||||-||+.|++.+.-|   .+..|...+..     .||.-++-...++++.+
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk~l~VP---Fv~~daT~fTe-----aGYvG~DVesii~~L~~  104 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAKLANAP---FIKVEATKFTE-----VGYVGKEVDSIIRDLTD  104 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCC---EEEEEGGGGC---------CCCCTHHHHHHHHH
T ss_pred             cccEEEECCCCCCHHHHHHHHHHHhCCC---EEEeecceeee-----cceeecchhHHHHHHHH
Confidence            4468899999999999999999998655   56666665553     36666555555555443

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.76  E-value=0.00038  Score=56.86  Aligned_cols=27  Identities=37%  Similarity=0.564  Sum_probs=25.6

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      +|.+|+|-|+.||||||+++.|...|.
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~   28 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQ   28 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence            799999999999999999999999885

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.75  E-value=0.00049  Score=60.18  Aligned_cols=32  Identities=31%  Similarity=0.345  Sum_probs=27.5

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhccCCc
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGK  131 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~  131 (269)
                      .+.-+|+|+|++|+|||||...|.+.+...|.
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~   83 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGL   83 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTC
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHHHHHHhcCC
Confidence            45778999999999999999999988865553

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.74  E-value=0.00037  Score=56.95  Aligned_cols=24  Identities=38%  Similarity=0.534  Sum_probs=21.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhc
Q 024315          104 VIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      .+.|.||+|+||||++++|++.+.
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~l~   70 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALARELF   70 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHHH
Confidence            477999999999999999998874

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.69  E-value=0.00049  Score=56.65  Aligned_cols=36  Identities=22%  Similarity=0.154  Sum_probs=27.3

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee
Q 024315          102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (269)
Q Consensus       102 g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~  140 (269)
                      ...+.|.||+|+||||++++|++.+.   ...+.++..+
T Consensus        52 ~~~lll~GPpG~GKTt~a~~la~~~~---~~~~~~~~~~   87 (253)
T d1sxja2          52 FRAAMLYGPPGIGKTTAAHLVAQELG---YDILEQNASD   87 (253)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHTT---CEEEEECTTS
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHH---hhhhcccccc
Confidence            34688999999999999999999874   2244555443

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.68  E-value=0.0004  Score=56.12  Aligned_cols=34  Identities=32%  Similarity=0.440  Sum_probs=25.5

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~  142 (269)
                      -+|+|+|.+||||||+++.|.. +     |..+++.|.+.
T Consensus         3 ~iIgITG~igSGKStv~~~l~~-~-----G~~vidaD~i~   36 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD-L-----GVPLVDADVVA   36 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT-T-----TCCEEEHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH-C-----CCeEEEchHHH
Confidence            4789999999999999998864 3     23356666554

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.65  E-value=0.00047  Score=56.59  Aligned_cols=35  Identities=26%  Similarity=0.363  Sum_probs=26.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~  141 (269)
                      -+.|.||+|+||||+++++++.+..+   ...+++...
T Consensus        37 ~~Ll~GPpG~GKTtla~~la~~~~~~---~~~~~~~~~   71 (239)
T d1ixsb2          37 HLLLFGPPGLGKTTLAHVIAHELGVN---LRVTSGPAI   71 (239)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTCC---EEEEETTTC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCC---eEeccCCcc
Confidence            46799999999999999999988532   445555433

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.00026  Score=57.77  Aligned_cols=27  Identities=33%  Similarity=0.251  Sum_probs=24.5

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      ++.+|+|-|+.||||||+++.|++.|.
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            467899999999999999999999874

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.62  E-value=0.00063  Score=58.38  Aligned_cols=42  Identities=24%  Similarity=0.202  Sum_probs=29.8

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhccC---CccEEEECCeec
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALHWR---GKLTYILDGDNC  141 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~---~~g~i~l~g~~~  141 (269)
                      +.+-+|+|.|+.|||||||++.|...|...   ...++.+.-|+.
T Consensus        25 ~~P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~Ddf   69 (286)
T d1odfa_          25 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF   69 (286)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred             CCCEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCC
Confidence            457799999999999999999887766321   123445555554

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.60  E-value=0.00055  Score=55.45  Aligned_cols=34  Identities=35%  Similarity=0.439  Sum_probs=26.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecCc
Q 024315          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH  143 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~~  143 (269)
                      +|+|+|..||||||+++.|..+      |..+++.|.+.+
T Consensus         5 iIgitG~igSGKStv~~~l~~~------G~~vidaD~i~~   38 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFADL------GINVIDADIIAR   38 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHT------TCEEEEHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHHHC------CCcEEEchHHHH
Confidence            7899999999999999988653      234666665543

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.57  E-value=0.00056  Score=55.61  Aligned_cols=23  Identities=30%  Similarity=0.495  Sum_probs=21.1

Q ss_pred             EEEEcCCCChHHHHHHHHHHhhc
Q 024315          105 IWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       105 i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      +.|.||+|+||||+++.+++.+.
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~l~   58 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKELY   58 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHHHc
Confidence            78999999999999999999863

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.56  E-value=0.00083  Score=58.54  Aligned_cols=41  Identities=34%  Similarity=0.357  Sum_probs=30.9

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~  140 (269)
                      .+.-+|+|+|++|+|||||...|...+...+...-.+-.|.
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDp   89 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDP   89 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECG
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeeccc
Confidence            45678999999999999999999987755554444444443

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.55  E-value=0.00058  Score=56.63  Aligned_cols=26  Identities=46%  Similarity=0.657  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      +|.+.+|+|+||.|||||+++|.+..
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~  119 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGL  119 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcchh
Confidence            68899999999999999999997654

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.53  E-value=0.0005  Score=58.22  Aligned_cols=23  Identities=39%  Similarity=0.482  Sum_probs=20.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhh
Q 024315          104 VIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      +.+|+|+|||||||++.+|.-.+
T Consensus        26 lnvlvG~NgsGKS~iL~Ai~~~l   48 (308)
T d1e69a_          26 VTAIVGPNGSGKSNIIDAIKWVF   48 (308)
T ss_dssp             EEEEECCTTTCSTHHHHHHHHTS
T ss_pred             eEEEECCCCCcHHHHHHHHHHHh
Confidence            77899999999999999996544

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.49  E-value=0.0014  Score=53.61  Aligned_cols=28  Identities=18%  Similarity=0.055  Sum_probs=24.6

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhcc
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALHW  128 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~  128 (269)
                      .+..+.|.||+|+||||+++.|+..+..
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~~l~~   69 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWELYKD   69 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHhc
Confidence            4457889999999999999999999864

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.49  E-value=0.0007  Score=59.43  Aligned_cols=28  Identities=32%  Similarity=0.329  Sum_probs=22.8

Q ss_pred             ceecCCCeEEEEEcCCCChHHHHHHHHH
Q 024315           96 QLLQQKGCVIWITGLSGSGKSTLACALS  123 (269)
Q Consensus        96 sl~~~~g~~i~l~G~sGsGKSTla~~L~  123 (269)
                      .+....+.+.+|+|+|||||||++.+|.
T Consensus        19 ~i~f~~~~l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          19 KVGFGESNFTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred             EEeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence            4445545588899999999999999985

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.45  E-value=0.0015  Score=54.63  Aligned_cols=37  Identities=22%  Similarity=0.245  Sum_probs=29.0

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315          102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (269)
Q Consensus       102 g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~  141 (269)
                      ..-+.|.||+|+|||+++++|++.+.   ...+.++..++
T Consensus        42 ~~giLl~GppGtGKT~la~aia~~~~---~~~~~i~~~~l   78 (247)
T d1ixza_          42 PKGVLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDF   78 (247)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHTT---CCEEEEEHHHH
T ss_pred             CceEEEecCCCCChhHHHHHHHHHcC---CCEEEEEhHHh
Confidence            44578999999999999999999875   34666665544

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.43  E-value=0.0023  Score=53.51  Aligned_cols=39  Identities=21%  Similarity=0.359  Sum_probs=29.4

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~  142 (269)
                      ++.-+.|.||+|+|||+++++++..+.   ...+.++...+.
T Consensus        37 ~~~giLL~GppGtGKT~l~~ala~~~~---~~~~~i~~~~l~   75 (258)
T d1e32a2          37 PPRGILLYGPPGTGKTLIARAVANETG---AFFFLINGPEIM   75 (258)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHTT---CEEEEECHHHHT
T ss_pred             CCceeEEecCCCCCchHHHHHHHHHhC---CeEEEEEchhhc
Confidence            344588999999999999999999764   345666655443

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.43  E-value=0.0017  Score=54.76  Aligned_cols=40  Identities=20%  Similarity=0.222  Sum_probs=30.4

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~  141 (269)
                      +..+.-+.|.||+|+|||+++++|++.+.   ...+.++..++
T Consensus        38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~---~~~~~~~~~~l   77 (265)
T d1r7ra3          38 MTPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISIKGPEL   77 (265)
T ss_dssp             CCCCCEEEEBCCTTSSHHHHHHHHHHHTT---CEEEEECHHHH
T ss_pred             CCCCCeEEEECCCCCcchhHHHHHHHHhC---CcEEEEEHHHh
Confidence            34556688999999999999999999885   33556654443

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=96.42  E-value=0.00027  Score=55.03  Aligned_cols=31  Identities=32%  Similarity=0.314  Sum_probs=24.9

Q ss_pred             ceecCCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315           96 QLLQQKGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus        96 sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      ++.+.+| +.+|+|+|||||||++.+|.-.|.
T Consensus        19 ~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L~   49 (222)
T d1qhla_          19 TFDLDEL-VTTLSGGNGAGKSTTMAAFVTALI   49 (222)
T ss_dssp             EECHHHH-HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             EEEcCCC-eEEEECCCCCCHHHHHHHHHHHhc
Confidence            4445454 778999999999999999987664

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.38  E-value=0.00086  Score=54.48  Aligned_cols=36  Identities=28%  Similarity=0.410  Sum_probs=26.4

Q ss_pred             EEEEcCCCChHHHHHHHHHHhhccCC--ccEEEECCee
Q 024315          105 IWITGLSGSGKSTLACALSQALHWRG--KLTYILDGDN  140 (269)
Q Consensus       105 i~l~G~sGsGKSTla~~L~~~l~~~~--~g~i~l~g~~  140 (269)
                      +.|.||+|+||||+++.|++.+....  ...+.++..+
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~~l~~~~~~~~~~~~n~~~   76 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASD   76 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTS
T ss_pred             EEEECCCCCCchhhHHHHHHHHhccccccccccccccc
Confidence            67899999999999999998875321  2355555433

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.35  E-value=0.00083  Score=52.08  Aligned_cols=22  Identities=36%  Similarity=0.436  Sum_probs=19.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHHh
Q 024315          104 VIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      +|+|+|++|+|||||++.|.+.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~   23 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKK   23 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999864

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.33  E-value=0.0012  Score=51.74  Aligned_cols=31  Identities=26%  Similarity=0.473  Sum_probs=27.9

Q ss_pred             ecCCCeEEEEEcCCCChHHHHHHHHHHhhcc
Q 024315           98 LQQKGCVIWITGLSGSGKSTLACALSQALHW  128 (269)
Q Consensus        98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~  128 (269)
                      ..++|.++.|.|+=||||||++|.+++.+..
T Consensus        29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~   59 (158)
T d1htwa_          29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH   59 (158)
T ss_dssp             CCSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             cCCCCeEEEEecCCCccHHHHHHHHHhhccc
Confidence            3478999999999999999999999998853

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=96.30  E-value=0.0011  Score=50.07  Aligned_cols=22  Identities=32%  Similarity=0.504  Sum_probs=19.4

Q ss_pred             EEEEcCCCChHHHHHHHHHHhh
Q 024315          105 IWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       105 i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      |.|+|++|+|||||++.|.+.-
T Consensus         3 ivlvG~~~vGKSsLi~~l~~~~   24 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKLGE   24 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            6799999999999999997543

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.29  E-value=0.0012  Score=54.18  Aligned_cols=35  Identities=20%  Similarity=0.266  Sum_probs=27.2

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhhccCCccEEEEC-CeecC
Q 024315          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILD-GDNCR  142 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~-g~~~~  142 (269)
                      .+|+|+|..||||||+++.|...+     |...++ +|.+.
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~~-----g~~~i~~aD~i~   37 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSNY-----SAVKYQLAGPIK   37 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS-----CEEECCTTHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC-----CCeEEcccHHHH
Confidence            479999999999999999997654     355666 55544

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=96.23  E-value=0.0017  Score=54.93  Aligned_cols=43  Identities=28%  Similarity=0.383  Sum_probs=37.2

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~  141 (269)
                      +..|.++-|.|++||||||++-.++.....++...+++|...-
T Consensus        51 i~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~~   93 (263)
T d1u94a1          51 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA   93 (263)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             ccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccccc
Confidence            3688999999999999999999998877777778899988653

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=96.23  E-value=0.0015  Score=51.71  Aligned_cols=22  Identities=32%  Similarity=0.368  Sum_probs=20.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHHh
Q 024315          104 VIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      .|+|+|.+|+|||||++.|.+.
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHhcCC
Confidence            4999999999999999999863

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=96.21  E-value=0.0012  Score=50.26  Aligned_cols=24  Identities=38%  Similarity=0.498  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHh
Q 024315          102 GCVIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       102 g~~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      |-.++|+|++++|||||+++|.+.
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            456899999999999999999864

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=96.21  E-value=0.0023  Score=57.20  Aligned_cols=40  Identities=30%  Similarity=0.355  Sum_probs=31.8

Q ss_pred             ecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEEC
Q 024315           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD  137 (269)
Q Consensus        98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~  137 (269)
                      ..++.-++.++||.||||||++..+...+..+....+.+.
T Consensus       154 ~~~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiE  193 (401)
T d1p9ra_         154 IKRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVE  193 (401)
T ss_dssp             HTSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEE
T ss_pred             HhhhhceEEEEcCCCCCccHHHHHHhhhhcCCCceEEEec
Confidence            3456678899999999999999999998865555555554

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.20  E-value=0.0016  Score=52.86  Aligned_cols=27  Identities=19%  Similarity=0.156  Sum_probs=24.6

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHHh
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      +++|.++.|.|++|||||+++..++..
T Consensus        34 ip~G~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          34 IESMAITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             BCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            589999999999999999999999753

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.18  E-value=0.0014  Score=52.06  Aligned_cols=23  Identities=35%  Similarity=0.434  Sum_probs=20.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhh
Q 024315          104 VIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      +|+|+|++++|||||++.|.+.-
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~~   27 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTDS   27 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            78899999999999999998753

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.18  E-value=0.00095  Score=53.89  Aligned_cols=26  Identities=27%  Similarity=0.344  Sum_probs=23.5

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHH
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQ  124 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~  124 (269)
                      +++|.++.|.|++||||||++..++-
T Consensus        31 i~~G~~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          31 VETGSITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             EESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred             CcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            47899999999999999999988864

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=96.17  E-value=0.009  Score=50.38  Aligned_cols=41  Identities=27%  Similarity=0.370  Sum_probs=36.0

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~  140 (269)
                      +.|.++-|.|++||||||++..++.....++..++++|...
T Consensus        55 p~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~   95 (268)
T d1xp8a1          55 PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH   95 (268)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             cCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCc
Confidence            78999999999999999999999987766777788998764

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.15  E-value=0.001  Score=51.74  Aligned_cols=22  Identities=41%  Similarity=0.463  Sum_probs=20.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHHh
Q 024315          104 VIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      .|+|+|++++|||||.+.|.+.
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999864

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.13  E-value=0.0014  Score=53.06  Aligned_cols=23  Identities=26%  Similarity=0.498  Sum_probs=21.1

Q ss_pred             EEEEcCCCChHHHHHHHHHHhhc
Q 024315          105 IWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       105 i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      +.|.||+|+||||++++|++.+.
T Consensus        38 lLl~Gp~G~GKttl~~~la~~l~   60 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALAREIY   60 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCChhHHHHHHHHHhh
Confidence            66899999999999999999875

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.10  E-value=0.0015  Score=48.96  Aligned_cols=23  Identities=30%  Similarity=0.430  Sum_probs=20.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhh
Q 024315          104 VIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      .|+|+|++++|||||++.|.+.-
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~   24 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDR   24 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            36799999999999999998753

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.06  E-value=0.0013  Score=53.84  Aligned_cols=23  Identities=30%  Similarity=0.521  Sum_probs=21.2

Q ss_pred             EEEEcCCCChHHHHHHHHHHhhc
Q 024315          105 IWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       105 i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      +.|.||+|+||||++++++..+.
T Consensus        36 lll~Gp~G~GKTt~~~~la~~l~   58 (252)
T d1sxje2          36 LLLYGPNGTGKKTRCMALLESIF   58 (252)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHhhc
Confidence            67999999999999999999874

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.06  E-value=0.0011  Score=57.67  Aligned_cols=37  Identities=19%  Similarity=0.297  Sum_probs=29.0

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEEC
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD  137 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~  137 (269)
                      +.+..+.++|+.||||||++++|.+.++ +....+.+.
T Consensus       164 ~~~~nili~G~tgSGKTT~l~al~~~i~-~~~rivtiE  200 (323)
T d1g6oa_         164 AIGKNVIVCGGTGSGKTTYIKSIMEFIP-KEERIISIE  200 (323)
T ss_dssp             HHTCCEEEEESTTSSHHHHHHHHGGGSC-TTCCEEEEE
T ss_pred             HhCCCEEEEeeccccchHHHHHHhhhcc-cccceeecc
Confidence            3455689999999999999999999885 444555554

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.05  E-value=0.00073  Score=56.22  Aligned_cols=26  Identities=38%  Similarity=0.459  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      +|.+.+|+|+||.|||||+++|.+..
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred             ccceEEEECCCCccHHHHHHhhccHh
Confidence            57788899999999999999998654

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.02  E-value=0.0018  Score=52.73  Aligned_cols=26  Identities=27%  Similarity=0.232  Sum_probs=24.0

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          102 GCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       102 g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      +.+|+|-|.-||||||+++.|...+.
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~   27 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHh
Confidence            57899999999999999999999875

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.99  E-value=0.0017  Score=52.77  Aligned_cols=28  Identities=29%  Similarity=0.359  Sum_probs=24.5

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      +++|.++.|.|++||||||++-.++...
T Consensus        33 lp~G~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          33 IETQAITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             ccCCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            4789999999999999999999887543

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.99  E-value=0.0017  Score=50.16  Aligned_cols=22  Identities=41%  Similarity=0.373  Sum_probs=19.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHHh
Q 024315          104 VIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      +|+|+|.+++|||||+++|.+.
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4889999999999999999863

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.96  E-value=0.0018  Score=52.01  Aligned_cols=28  Identities=25%  Similarity=0.310  Sum_probs=25.5

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      +++|+++.|.|++|+||||++..++-..
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            5799999999999999999999998655

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.94  E-value=0.0018  Score=49.82  Aligned_cols=27  Identities=30%  Similarity=0.366  Sum_probs=21.6

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      ++.-.++|+|++|+|||||++.|.+.-
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~   37 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDR   37 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            344568899999999999999997643

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=95.93  E-value=0.0036  Score=52.13  Aligned_cols=50  Identities=26%  Similarity=0.150  Sum_probs=34.7

Q ss_pred             eeeccCcceecCCCeEEEEEcCCCChHHHHHHHHHHhh-ccCCccEEEECC
Q 024315           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDG  138 (269)
Q Consensus        89 v~~~~r~sl~~~~g~~i~l~G~sGsGKSTla~~L~~~l-~~~~~g~i~l~g  138 (269)
                      +...++.-.=+++|+++.|.|++|+||||++..|+..+ ...+..+.++.-
T Consensus        22 ~~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~   72 (277)
T d1cr2a_          22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML   72 (277)
T ss_dssp             CTTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred             chhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEeee
Confidence            33344333236899999999999999999999998644 234555555543

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.93  E-value=0.0025  Score=56.26  Aligned_cols=41  Identities=24%  Similarity=0.059  Sum_probs=31.7

Q ss_pred             ecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (269)
Q Consensus        98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~  141 (269)
                      ..+++..+.|.||+|+|||+++++|++.+.   ...+.+++-+.
T Consensus       150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~---~~~i~in~s~~  190 (362)
T d1svma_         150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG---GKALNVNLPLD  190 (362)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHHHHC---CEEECCSSCTT
T ss_pred             CCCCcCeEEEECCCCCCHHHHHHHHHHHcC---CCEEEEECcch
Confidence            446777999999999999999999999885   23455554443

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.93  E-value=0.0019  Score=50.30  Aligned_cols=22  Identities=36%  Similarity=0.367  Sum_probs=20.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHHh
Q 024315          104 VIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      +|+|+|.+|+|||||++.|.+.
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6999999999999999999874

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=95.92  E-value=0.0028  Score=47.86  Aligned_cols=23  Identities=39%  Similarity=0.544  Sum_probs=20.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhh
Q 024315          104 VIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      .++|+|.+|+|||||++.+.+.-
T Consensus         7 kI~ivG~~~vGKSSLi~~~~~~~   29 (169)
T d1upta_           7 RILILGLDGAGKTTILYRLQVGE   29 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            48899999999999999998754

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.90  E-value=0.0031  Score=54.37  Aligned_cols=38  Identities=24%  Similarity=0.250  Sum_probs=29.6

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~  141 (269)
                      +...+.++||+|+|||.|++.|++.+..   ..+.+|.-..
T Consensus        51 p~~~~lf~Gp~GvGKT~lak~la~~l~~---~~i~~d~s~~   88 (315)
T d1r6bx3          51 PVGSFLFAGPTGVGKTEVTVQLSKALGI---ELLRFDMSEY   88 (315)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHHHHTC---EEEEEEGGGC
T ss_pred             CceEEEEECCCcchhHHHHHHHHhhccC---CeeEeccccc
Confidence            4457889999999999999999998853   3566664443

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.90  E-value=0.0028  Score=51.61  Aligned_cols=36  Identities=31%  Similarity=0.393  Sum_probs=29.7

Q ss_pred             EEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee
Q 024315          105 IWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (269)
Q Consensus       105 i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~  140 (269)
                      ++|.|++|+|||.|++++...+...+...+++...+
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~   74 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADD   74 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHhccCccceEEechHH
Confidence            789999999999999999988876666666765543

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.89  E-value=0.0026  Score=50.55  Aligned_cols=26  Identities=46%  Similarity=0.433  Sum_probs=22.0

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHh
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      -.|.-+.|+|+||+||||++-.|...
T Consensus        12 ~~g~gvl~~G~sG~GKStlal~l~~~   37 (176)
T d1kkma_          12 IYGLGVLITGDSGVGKSETALELVQR   37 (176)
T ss_dssp             ETTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             ECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence            36778999999999999999887653

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.89  E-value=0.0019  Score=51.70  Aligned_cols=26  Identities=23%  Similarity=0.365  Sum_probs=22.9

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHH
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQ  124 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~  124 (269)
                      +++|+++.|.|++|+|||+++..++.
T Consensus        23 i~~G~~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          23 LPIGRSTLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            47999999999999999999976653

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.85  E-value=0.0024  Score=52.18  Aligned_cols=27  Identities=22%  Similarity=0.325  Sum_probs=23.7

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      .+..+.|.|++|+|||||++.++..+.
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~   54 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGINELN   54 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHHHCC
Confidence            566889999999999999999988764

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.84  E-value=0.0037  Score=54.02  Aligned_cols=41  Identities=22%  Similarity=0.186  Sum_probs=32.0

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~  141 (269)
                      +..++.++||+|+|||.+|+.|+..++......+.++....
T Consensus        52 p~~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~~   92 (315)
T d1qvra3          52 PIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY   92 (315)
T ss_dssp             CSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTC
T ss_pred             CceEEEEECCCcchHHHHHHHHHHHhcCCCcceEEEecccc
Confidence            44467899999999999999999998654456777765443

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=95.82  E-value=0.0028  Score=49.41  Aligned_cols=25  Identities=32%  Similarity=0.318  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHh
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      .+-.|+|+|.+|+|||||+++|.+.
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCC
Confidence            4556899999999999999999863

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.81  E-value=0.0015  Score=53.73  Aligned_cols=24  Identities=29%  Similarity=0.272  Sum_probs=21.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhc
Q 024315          104 VIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      ++.|+||+|+||||+++.+++.+.
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l~   71 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRVS   71 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHHH
Confidence            456679999999999999999875

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.73  E-value=0.0028  Score=50.42  Aligned_cols=24  Identities=42%  Similarity=0.459  Sum_probs=21.2

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHH
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQ  124 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~  124 (269)
                      .|.-+.|+|+||+||||++-.|..
T Consensus        14 ~g~gvli~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2          14 FGVGVLLTGRSGIGKSECALDLIN   37 (177)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHH
Confidence            677889999999999999988764

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=95.73  E-value=0.0023  Score=49.27  Aligned_cols=27  Identities=26%  Similarity=0.434  Sum_probs=22.7

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHHh
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      .++--.|+|+|.+|||||||++.|.+.
T Consensus        12 ~~k~~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          12 NHQEHKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHhcC
Confidence            355567899999999999999999764

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=95.67  E-value=0.002  Score=50.42  Aligned_cols=21  Identities=38%  Similarity=0.547  Sum_probs=18.9

Q ss_pred             EEEEcCCCChHHHHHHHHHHh
Q 024315          105 IWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       105 i~l~G~sGsGKSTla~~L~~~  125 (269)
                      |+|+|++++|||||++.|.+.
T Consensus         4 VaiiG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEEE
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999998653

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.59  E-value=0.0034  Score=49.96  Aligned_cols=23  Identities=30%  Similarity=0.413  Sum_probs=20.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhh
Q 024315          104 VIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      .|+|+|++|+|||||++.|.+.-
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~   24 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQ   24 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            58999999999999999998743

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.55  E-value=0.0016  Score=50.81  Aligned_cols=21  Identities=33%  Similarity=0.600  Sum_probs=19.2

Q ss_pred             EEEEcCCCChHHHHHHHHHHh
Q 024315          105 IWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       105 i~l~G~sGsGKSTla~~L~~~  125 (269)
                      |+|+|.+++|||||++.|.+.
T Consensus         4 VaivG~~nvGKSTLin~L~~~   24 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRA   24 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999753

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.54  E-value=0.0057  Score=51.73  Aligned_cols=44  Identities=27%  Similarity=0.313  Sum_probs=36.4

Q ss_pred             ecCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (269)
Q Consensus        98 ~~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~  141 (269)
                      =++.|.++-|.|++||||||++-.++......+.-.+++|....
T Consensus        56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~~   99 (269)
T d1mo6a1          56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHA   99 (269)
T ss_dssp             SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCcc
Confidence            35789999999999999999998887766566677889988653

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=95.51  E-value=0.0027  Score=48.60  Aligned_cols=23  Identities=22%  Similarity=0.349  Sum_probs=20.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhh
Q 024315          104 VIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      .++|+|++|+|||||++.|.+..
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~~~   26 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNGED   26 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            47899999999999999987643

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.49  E-value=0.0042  Score=51.42  Aligned_cols=25  Identities=28%  Similarity=0.246  Sum_probs=21.3

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHh
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      ...++.|+|||.|||||++|.+.-.
T Consensus        40 ~~~~~iiTGpN~~GKSt~lk~i~l~   64 (234)
T d1wb9a2          40 QRRMLIITGPNMGGKSTYMRQTALI   64 (234)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEEeccCchhhHHHHHHHHHH
Confidence            3468899999999999999998643

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=95.46  E-value=0.0052  Score=54.15  Aligned_cols=37  Identities=30%  Similarity=0.390  Sum_probs=27.5

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~  140 (269)
                      +...+.++||+|+|||-|++.|++.+..+   -+.+|...
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA~~~~~~---~ir~D~s~  103 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLAKHLDIP---IAISDATS  103 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCC---EEEEEGGG
T ss_pred             CCcceeeeCCCCccHHHHHHHHHhhcccc---eeehhhhh
Confidence            34457789999999999999999987533   45555433

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.43  E-value=0.0045  Score=48.77  Aligned_cols=26  Identities=42%  Similarity=0.422  Sum_probs=22.2

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHh
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      -.|.-+.|+|+||+||||++-.|...
T Consensus        13 ~~g~gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          13 VYGVGVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             ETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             ECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence            46778999999999999999877654

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=95.37  E-value=0.0033  Score=48.40  Aligned_cols=25  Identities=28%  Similarity=0.385  Sum_probs=21.1

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHh
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      ..-.|+|+|.+++|||||+++|.+.
T Consensus        15 ~~~~I~lvG~~NvGKSSL~n~L~~~   39 (188)
T d1puia_          15 TGIEVAFAGRSNAGKSSALNTLTNQ   39 (188)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3455899999999999999999653

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.26  E-value=0.0025  Score=55.00  Aligned_cols=25  Identities=36%  Similarity=0.384  Sum_probs=22.5

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          103 CVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      --+.|.|++|+||||+++.|.+.|+
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~iLp   53 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAALLP   53 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             CeEEEECCCCccHHHHHHHHHHhCC
Confidence            3578999999999999999999884

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=95.25  E-value=0.005  Score=47.11  Aligned_cols=23  Identities=26%  Similarity=0.384  Sum_probs=19.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhh
Q 024315          104 VIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      -++|+|++|+|||||++.+...-
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~~~   26 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIASGQ   26 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            36799999999999999987644

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.22  E-value=0.0051  Score=47.36  Aligned_cols=21  Identities=29%  Similarity=0.411  Sum_probs=19.1

Q ss_pred             EEEEcCCCChHHHHHHHHHHh
Q 024315          105 IWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       105 i~l~G~sGsGKSTla~~L~~~  125 (269)
                      ++++|.+|+|||||++.+.+.
T Consensus         8 i~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            789999999999999998754

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.22  E-value=0.0016  Score=49.55  Aligned_cols=22  Identities=36%  Similarity=0.360  Sum_probs=19.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHHh
Q 024315          104 VIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      -|+|+|.+++|||||+++|.+.
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3789999999999999999875

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=95.18  E-value=0.0056  Score=50.31  Aligned_cols=23  Identities=30%  Similarity=0.303  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHh
Q 024315          103 CVIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      .++.|+|||.+||||++|.+.-.
T Consensus        36 ~~~iiTGpN~~GKSt~lk~i~l~   58 (224)
T d1ewqa2          36 ELVLITGPNMAGKSTFLRQTALI   58 (224)
T ss_dssp             CEEEEESCSSSSHHHHHHHHHHH
T ss_pred             cEEEEECCCccccchhhhhhHHH
Confidence            47899999999999999987643

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.07  E-value=0.0061  Score=46.60  Aligned_cols=20  Identities=20%  Similarity=0.345  Sum_probs=18.3

Q ss_pred             EEEEcCCCChHHHHHHHHHH
Q 024315          105 IWITGLSGSGKSTLACALSQ  124 (269)
Q Consensus       105 i~l~G~sGsGKSTla~~L~~  124 (269)
                      ++++|.+|+|||||++.+..
T Consensus         5 v~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998875

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.06  E-value=0.017  Score=49.92  Aligned_cols=38  Identities=26%  Similarity=0.248  Sum_probs=27.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~  142 (269)
                      ++.+.||+|+|||.++++|++.+... ...+.+++-++.
T Consensus       125 ~~l~~G~pG~GKT~la~ala~~~~~~-~~~~~~~~~~~~  162 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGEALGGK-DKYATVRFGEPL  162 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHHHHTT-SCCEEEEBSCSS
T ss_pred             eEEEECCCCccHHHHHHHHHHHhcCC-CCeEEEEhhHhh
Confidence            45668999999999999999987421 223556665554

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.05  E-value=0.0063  Score=46.82  Aligned_cols=21  Identities=33%  Similarity=0.446  Sum_probs=18.8

Q ss_pred             EEEEcCCCChHHHHHHHHHHh
Q 024315          105 IWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       105 i~l~G~sGsGKSTla~~L~~~  125 (269)
                      ++++|.+|+|||||++.+.+.
T Consensus         5 i~~vG~~~vGKSsLi~~~~~~   25 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVND   25 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            789999999999999998753

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.05  E-value=0.0056  Score=51.04  Aligned_cols=25  Identities=24%  Similarity=0.369  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHh
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      ..-.|+|+|.+|+|||||.+.|.+.
T Consensus        31 ~~l~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          31 NSLTILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhCC
Confidence            3446899999999999999999875

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=94.95  E-value=0.0056  Score=47.82  Aligned_cols=22  Identities=32%  Similarity=0.362  Sum_probs=19.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHHh
Q 024315          104 VIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      .|+|+|.+.+|||||+++|.+.
T Consensus         7 nIaiiG~~naGKSTL~n~L~~~   28 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVLTEI   28 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTT
T ss_pred             EEEEEeCCCCcHHHHHHHHHHh
Confidence            4899999999999999999863

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.85  E-value=0.0075  Score=46.63  Aligned_cols=21  Identities=33%  Similarity=0.518  Sum_probs=18.9

Q ss_pred             EEEEcCCCChHHHHHHHHHHh
Q 024315          105 IWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       105 i~l~G~sGsGKSTla~~L~~~  125 (269)
                      ++++|.+|+|||||++.+..-
T Consensus         7 i~vvG~~~vGKTsLi~~~~~~   27 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTRN   27 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988653

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.80  E-value=0.0078  Score=46.42  Aligned_cols=21  Identities=33%  Similarity=0.433  Sum_probs=18.7

Q ss_pred             EEEEcCCCChHHHHHHHHHHh
Q 024315          105 IWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       105 i~l~G~sGsGKSTla~~L~~~  125 (269)
                      ++++|.+|+|||||++.+..-
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            789999999999999988754

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.75  E-value=0.01  Score=47.71  Aligned_cols=27  Identities=33%  Similarity=0.414  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      .+..+.|.||+|+||||+++.+++.+.
T Consensus        23 l~h~lLl~Gp~G~GKtt~a~~~a~~l~   49 (207)
T d1a5ta2          23 GHHALLIQALPGMGDDALIYALSRYLL   49 (207)
T ss_dssp             CCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             cCeEEEEECCCCCcHHHHHHHHHHhcc
Confidence            355688999999999999999999874

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=94.74  E-value=0.0066  Score=46.67  Aligned_cols=23  Identities=35%  Similarity=0.486  Sum_probs=19.8

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHH
Q 024315          102 GCVIWITGLSGSGKSTLACALSQ  124 (269)
Q Consensus       102 g~~i~l~G~sGsGKSTla~~L~~  124 (269)
                      .-.++++|++|+|||||++.|.+
T Consensus        16 ~~kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          16 EVRILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEEEECCCCCCHHHHHHHHhc
Confidence            34588999999999999998854

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=94.70  E-value=0.016  Score=45.61  Aligned_cols=38  Identities=29%  Similarity=0.254  Sum_probs=33.2

Q ss_pred             eEEEEEcCC-CChHHHHHHHHHHhhccCCccEEEECCee
Q 024315          103 CVIWITGLS-GSGKSTLACALSQALHWRGKLTYILDGDN  140 (269)
Q Consensus       103 ~~i~l~G~s-GsGKSTla~~L~~~l~~~~~g~i~l~g~~  140 (269)
                      +.+.|+|-. |.||||++-.|+..|...|..+.+++-+.
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id~d~   40 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVA   40 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECSEE
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEECccc
Confidence            467899996 99999999999999988888888888654

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=94.69  E-value=0.0089  Score=49.32  Aligned_cols=26  Identities=35%  Similarity=0.432  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      +|.++.|.|++|+||||++-.|+..+
T Consensus        28 pg~~~~i~G~~G~GKS~l~l~la~~i   53 (274)
T d1nlfa_          28 AGTVGALVSPGGAGKSMLALQLAAQI   53 (274)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            58999999999999999999888654

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.68  E-value=0.0089  Score=46.52  Aligned_cols=21  Identities=33%  Similarity=0.442  Sum_probs=18.8

Q ss_pred             EEEEcCCCChHHHHHHHHHHh
Q 024315          105 IWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       105 i~l~G~sGsGKSTla~~L~~~  125 (269)
                      ++++|.+|+|||||++.+...
T Consensus         5 v~vvG~~~vGKSSLi~~l~~~   25 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVNK   25 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988753

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.65  E-value=0.0083  Score=45.88  Aligned_cols=22  Identities=36%  Similarity=0.508  Sum_probs=19.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHHh
Q 024315          104 VIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      -++++|.+|+|||||++.+...
T Consensus         5 Ki~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3789999999999999998764

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.65  E-value=0.0086  Score=46.62  Aligned_cols=21  Identities=29%  Similarity=0.414  Sum_probs=18.7

Q ss_pred             EEEEcCCCChHHHHHHHHHHh
Q 024315          105 IWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       105 i~l~G~sGsGKSTla~~L~~~  125 (269)
                      ++|+|.+|+|||||++.+...
T Consensus         8 i~ivG~~~vGKTsLi~~l~~~   28 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTDN   28 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            789999999999999988753

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.64  E-value=0.0083  Score=46.11  Aligned_cols=23  Identities=35%  Similarity=0.508  Sum_probs=20.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhh
Q 024315          104 VIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      -++|+|.+|+|||||++.+...-
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~~~   29 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQGL   29 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            37899999999999999998643

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.64  E-value=0.0084  Score=45.78  Aligned_cols=21  Identities=38%  Similarity=0.509  Sum_probs=18.9

Q ss_pred             EEEEcCCCChHHHHHHHHHHh
Q 024315          105 IWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       105 i~l~G~sGsGKSTla~~L~~~  125 (269)
                      ++++|.+|+|||||++.+...
T Consensus         5 i~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998764

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.63  E-value=0.011  Score=48.31  Aligned_cols=26  Identities=27%  Similarity=0.464  Sum_probs=22.8

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          102 GCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       102 g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      +..+.|.||+|+||||+++.++..+.
T Consensus        34 ~~~~Ll~Gp~G~GKtt~a~~~~~~l~   59 (239)
T d1njfa_          34 HHAYLFSGTRGVGKTSIARLLAKGLN   59 (239)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CeeEEEECCCCCcHHHHHHHHHHHhc
Confidence            44577999999999999999998875

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=94.60  E-value=0.016  Score=48.12  Aligned_cols=42  Identities=29%  Similarity=0.474  Sum_probs=36.7

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCee
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~  140 (269)
                      -+.+.++.+.|.-|.||||++..|+..+...|.-+.++|-|.
T Consensus         5 ~~~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~Dp   46 (296)
T d1ihua1           5 QNIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDP   46 (296)
T ss_dssp             SSCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             CCCCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            356778999999999999999999999987788888998875

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.50  E-value=0.011  Score=45.24  Aligned_cols=23  Identities=26%  Similarity=0.411  Sum_probs=19.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhh
Q 024315          104 VIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      -++|+|.+|+|||||++.+...-
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~~~   27 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVTGT   27 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            47899999999999999987643

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.50  E-value=0.012  Score=49.31  Aligned_cols=25  Identities=28%  Similarity=0.494  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHh
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      ...+++|+|..|.||||||+.+...
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            4678999999999999999998764

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.50  E-value=0.011  Score=44.99  Aligned_cols=21  Identities=29%  Similarity=0.408  Sum_probs=18.8

Q ss_pred             EEEEcCCCChHHHHHHHHHHh
Q 024315          105 IWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       105 i~l~G~sGsGKSTla~~L~~~  125 (269)
                      ++++|.+|+|||||++.+..-
T Consensus         5 v~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988753

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.50  E-value=0.0097  Score=45.72  Aligned_cols=22  Identities=32%  Similarity=0.447  Sum_probs=19.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHHh
Q 024315          104 VIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      -++|+|.+|+|||||++.+...
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~~   28 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQS   28 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5889999999999999988753

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.49  E-value=0.0094  Score=45.66  Aligned_cols=21  Identities=29%  Similarity=0.442  Sum_probs=18.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHH
Q 024315          104 VIWITGLSGSGKSTLACALSQ  124 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~  124 (269)
                      -++++|.+|+|||||++.+..
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            378999999999999998875

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=94.43  E-value=0.012  Score=51.84  Aligned_cols=36  Identities=31%  Similarity=0.398  Sum_probs=26.8

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECC
Q 024315          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG  138 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g  138 (269)
                      .-+.|+|++|||||++++.|...+...+.+.+.+|.
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD~   86 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDP   86 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             ceEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEEeC
Confidence            347899999999999987666544455666777764

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.42  E-value=0.01  Score=45.33  Aligned_cols=22  Identities=32%  Similarity=0.413  Sum_probs=19.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHHh
Q 024315          104 VIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      -|+|+|.+|+|||||++.+...
T Consensus         6 Kv~liG~~~vGKTsLl~~~~~~   27 (167)
T d1xtqa1           6 KIAILGYRSVGKSSLTIQFVEG   27 (167)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5889999999999999998753

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.38  E-value=0.012  Score=45.39  Aligned_cols=21  Identities=29%  Similarity=0.390  Sum_probs=18.8

Q ss_pred             EEEEcCCCChHHHHHHHHHHh
Q 024315          105 IWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       105 i~l~G~sGsGKSTla~~L~~~  125 (269)
                      ++++|.+|+|||||++.+...
T Consensus         9 I~vvG~~~vGKSSli~~~~~~   29 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVTN   29 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999888753

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.38  E-value=0.011  Score=45.03  Aligned_cols=21  Identities=19%  Similarity=0.246  Sum_probs=18.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHH
Q 024315          104 VIWITGLSGSGKSTLACALSQ  124 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~  124 (269)
                      .++++|.+|+|||||++.+..
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999999875

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.37  E-value=0.012  Score=45.02  Aligned_cols=21  Identities=33%  Similarity=0.403  Sum_probs=18.8

Q ss_pred             EEEEcCCCChHHHHHHHHHHh
Q 024315          105 IWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       105 i~l~G~sGsGKSTla~~L~~~  125 (269)
                      ++|+|.+|+|||||++.+...
T Consensus         7 ivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988753

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=94.34  E-value=0.014  Score=47.31  Aligned_cols=27  Identities=19%  Similarity=0.255  Sum_probs=22.2

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      ++.+ +|+|+|.+++|||||++.|.+.-
T Consensus         3 ~r~p-~IaIiGh~d~GKSTL~~~L~~~~   29 (227)
T d1g7sa4           3 IRSP-IVSVLGHVDHGKTTLLDHIRGSA   29 (227)
T ss_dssp             ECCC-EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCC-EEEEEeCCCccHHHHHHHHHhhc
Confidence            3444 49999999999999999998753

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.34  E-value=0.012  Score=45.00  Aligned_cols=22  Identities=18%  Similarity=0.271  Sum_probs=19.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHHh
Q 024315          104 VIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      -++|+|.+|+|||||++.+..-
T Consensus         5 KivlvG~~~vGKTsLi~r~~~~   26 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCEN   26 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999988753

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.33  E-value=0.011  Score=45.49  Aligned_cols=21  Identities=29%  Similarity=0.476  Sum_probs=18.9

Q ss_pred             EEEEcCCCChHHHHHHHHHHh
Q 024315          105 IWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       105 i~l~G~sGsGKSTla~~L~~~  125 (269)
                      |+++|.+|+|||||++.+..-
T Consensus         8 I~lvG~~~vGKTsll~~~~~~   28 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIEK   28 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998753

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.24  E-value=0.013  Score=44.77  Aligned_cols=22  Identities=23%  Similarity=0.425  Sum_probs=19.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHHh
Q 024315          104 VIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      -++|+|.+|+|||||++.+..-
T Consensus         6 Ki~lvG~~~vGKTsli~rl~~~   27 (167)
T d1z0ja1           6 KVCLLGDTGVGKSSIMWRFVED   27 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999998753

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=94.24  E-value=0.022  Score=46.98  Aligned_cols=42  Identities=26%  Similarity=0.313  Sum_probs=36.1

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~  141 (269)
                      +...++.+.|.=|.||||++-.|+..+...|+.+.++|-|..
T Consensus        18 ~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~Dp~   59 (279)
T d1ihua2          18 NEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPA   59 (279)
T ss_dssp             TSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            456788888999999999999999988777888899998854

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.21  E-value=0.013  Score=44.89  Aligned_cols=23  Identities=26%  Similarity=0.326  Sum_probs=19.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhh
Q 024315          104 VIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      -++++|.+|+|||||++.+..--
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~~~   30 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVKGQ   30 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            47899999999999999988543

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.21  E-value=0.012  Score=45.19  Aligned_cols=22  Identities=32%  Similarity=0.456  Sum_probs=19.1

Q ss_pred             EEEEcCCCChHHHHHHHHHHhh
Q 024315          105 IWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       105 i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      ++++|.+|+|||||++.+.+.-
T Consensus         4 i~lvG~~~vGKTsLi~~~~~~~   25 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGGVE   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC-
T ss_pred             EEEECCCCcCHHHHHHHHhCCc
Confidence            7899999999999999987654

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.20  E-value=0.017  Score=47.02  Aligned_cols=22  Identities=36%  Similarity=0.555  Sum_probs=19.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHHh
Q 024315          104 VIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      ++.|+|.-|||||||++.|.+.
T Consensus         5 v~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEEeeCCCCCHHHHHHHHHhc
Confidence            6789999999999999999875

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.14  E-value=0.024  Score=45.27  Aligned_cols=39  Identities=44%  Similarity=0.616  Sum_probs=33.4

Q ss_pred             CeEEEEE-cCCCChHHHHHHHHHHhhccCCccEEEECCee
Q 024315          102 GCVIWIT-GLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (269)
Q Consensus       102 g~~i~l~-G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~  140 (269)
                      |++|++. +.-|+||||++-.|+..+...|..+.++|-|.
T Consensus         2 ~~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD~D~   41 (237)
T d1g3qa_           2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDL   41 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            6788888 77899999999999999987777888998653

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=94.14  E-value=0.0076  Score=46.78  Aligned_cols=24  Identities=42%  Similarity=0.560  Sum_probs=19.7

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHH
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQ  124 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~  124 (269)
                      +---++++|.+|+|||||++.+..
T Consensus        16 k~~KI~lvG~~~vGKTsLi~~l~~   39 (182)
T d1moza_          16 KELRILILGLDGAGKTTILYRLQI   39 (182)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhc
Confidence            344588999999999999998754

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.02  E-value=0.014  Score=45.10  Aligned_cols=23  Identities=26%  Similarity=0.255  Sum_probs=19.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhh
Q 024315          104 VIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      -++++|.+|+|||||++.+..--
T Consensus         4 KivvvG~~~vGKTsLi~~~~~~~   26 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSKDQ   26 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            36789999999999999887643

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.02  E-value=0.015  Score=44.93  Aligned_cols=21  Identities=43%  Similarity=0.582  Sum_probs=19.1

Q ss_pred             EEEEcCCCChHHHHHHHHHHh
Q 024315          105 IWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       105 i~l~G~sGsGKSTla~~L~~~  125 (269)
                      ++++|.+|+|||||++.+...
T Consensus        10 i~vvG~~~vGKTsli~~l~~~   30 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTDD   30 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998763

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.99  E-value=0.014  Score=44.92  Aligned_cols=22  Identities=32%  Similarity=0.451  Sum_probs=19.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHHh
Q 024315          104 VIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      -|+|+|.+|+|||||++.+...
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999988754

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.96  E-value=0.014  Score=45.92  Aligned_cols=21  Identities=38%  Similarity=0.520  Sum_probs=18.9

Q ss_pred             EEEEcCCCChHHHHHHHHHHh
Q 024315          105 IWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       105 i~l~G~sGsGKSTla~~L~~~  125 (269)
                      ++|+|++|+|||||++.+...
T Consensus         9 ivvvG~~~vGKTsli~~l~~~   29 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSDD   29 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhhC
Confidence            789999999999999988754

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.93  E-value=0.016  Score=45.04  Aligned_cols=23  Identities=17%  Similarity=0.202  Sum_probs=19.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhh
Q 024315          104 VIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      -++|+|.+|+|||||++.+...-
T Consensus         7 KivviG~~~vGKTsli~~~~~~~   29 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTTNA   29 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            48899999999999999887643

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.88  E-value=0.016  Score=44.21  Aligned_cols=23  Identities=17%  Similarity=0.228  Sum_probs=19.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhh
Q 024315          104 VIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      -++++|.+|+|||||++.+...-
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~~~   27 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            37899999999999999887543

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.88  E-value=0.014  Score=45.42  Aligned_cols=19  Identities=37%  Similarity=0.447  Sum_probs=17.7

Q ss_pred             EEEEEcCCCChHHHHHHHH
Q 024315          104 VIWITGLSGSGKSTLACAL  122 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L  122 (269)
                      -+.|+|.+|+|||||++.+
T Consensus         4 KivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4789999999999999999

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.83  E-value=0.017  Score=44.19  Aligned_cols=21  Identities=29%  Similarity=0.506  Sum_probs=18.8

Q ss_pred             EEEEcCCCChHHHHHHHHHHh
Q 024315          105 IWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       105 i~l~G~sGsGKSTla~~L~~~  125 (269)
                      ++++|.+|+|||||++.+..-
T Consensus         9 i~vvG~~~vGKTsli~~~~~~   29 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKDG   29 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            889999999999999988653

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.80  E-value=0.018  Score=44.12  Aligned_cols=22  Identities=32%  Similarity=0.388  Sum_probs=19.4

Q ss_pred             EEEEcCCCChHHHHHHHHHHhh
Q 024315          105 IWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       105 i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      ++++|.+|+|||+|++.+...-
T Consensus         5 i~lvG~~~vGKTsli~r~~~~~   26 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLTKR   26 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHhCC
Confidence            7899999999999999988643

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.71  E-value=0.01  Score=45.73  Aligned_cols=20  Identities=30%  Similarity=0.511  Sum_probs=8.4

Q ss_pred             EEEEcCCCChHHHHHHHHHH
Q 024315          105 IWITGLSGSGKSTLACALSQ  124 (269)
Q Consensus       105 i~l~G~sGsGKSTla~~L~~  124 (269)
                      |+++|.+|+|||||++.|.+
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEECCCCC-----------
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999988875

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=93.65  E-value=0.014  Score=44.78  Aligned_cols=25  Identities=32%  Similarity=0.460  Sum_probs=20.8

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHH
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQ  124 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~  124 (269)
                      ++.-.+.++|++|+|||||++.+..
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTC
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhc
Confidence            4455688999999999999998864

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=93.58  E-value=0.02  Score=43.85  Aligned_cols=21  Identities=29%  Similarity=0.430  Sum_probs=18.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHH
Q 024315          104 VIWITGLSGSGKSTLACALSQ  124 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~  124 (269)
                      -++|+|.+|+|||||++.+..
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999999764

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=93.55  E-value=0.02  Score=49.69  Aligned_cols=34  Identities=21%  Similarity=0.303  Sum_probs=27.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhccCCccEEEEC
Q 024315          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILD  137 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~  137 (269)
                      .|.|=|.-||||||+++.|...+...+...+++.
T Consensus         7 rI~IEG~iGsGKSTl~~~L~~~l~~~g~~v~~~~   40 (331)
T d1osna_           7 RIYLDGAYGIGKTTAAEEFLHHFAITPNRILLIG   40 (331)
T ss_dssp             EEEEEESSSSCTTHHHHHHHHTTTTSGGGEEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEe
Confidence            4788999999999999999998865555555553

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.52  E-value=0.017  Score=44.42  Aligned_cols=23  Identities=35%  Similarity=0.420  Sum_probs=19.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhh
Q 024315          104 VIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      -+.++|.+|+|||||++.+.+..
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~~~   27 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAGVH   27 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCc
Confidence            37899999999999999987643

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=93.49  E-value=0.029  Score=46.18  Aligned_cols=39  Identities=33%  Similarity=0.354  Sum_probs=34.0

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~  141 (269)
                      .+|+|.|.=|.||||++-.|+..|...|+.+.++|-|..
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D~q   40 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPK   40 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTT
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            368889999999999999999999877888889987754

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.46  E-value=0.018  Score=46.45  Aligned_cols=27  Identities=22%  Similarity=0.159  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhhccC
Q 024315          103 CVIWITGLSGSGKSTLACALSQALHWR  129 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l~~~  129 (269)
                      --+.|+|.+|+|||||++.+..--+.|
T Consensus         7 ~KilllG~~~vGKTsll~~~~~~~~~p   33 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMRILHVVL   33 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHCCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCcCC
Confidence            357899999999999999986443334

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.45  E-value=0.022  Score=43.42  Aligned_cols=23  Identities=30%  Similarity=0.505  Sum_probs=19.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhh
Q 024315          104 VIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      -++++|.+|+|||+|++.+..--
T Consensus         5 KivvvG~~~vGKTsli~r~~~~~   27 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQGI   27 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            37899999999999999987543

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.45  E-value=0.029  Score=44.65  Aligned_cols=39  Identities=33%  Similarity=0.430  Sum_probs=32.3

Q ss_pred             EEEEE-cCCCChHHHHHHHHHHhhccCCccEEEECCeecC
Q 024315          104 VIWIT-GLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (269)
Q Consensus       104 ~i~l~-G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~~  142 (269)
                      +|+++ |.-|+||||++..|+..+...+..+.++|-|...
T Consensus         3 vIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD~D~~~   42 (232)
T d1hyqa_           3 TITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITM   42 (232)
T ss_dssp             EEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred             EEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            56666 8899999999999999998777888898876543

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.44  E-value=0.022  Score=43.63  Aligned_cols=22  Identities=32%  Similarity=0.419  Sum_probs=19.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHHh
Q 024315          104 VIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      -+.++|.+|+|||||++.+...
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~~   27 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQK   27 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3678999999999999988753

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.39  E-value=0.025  Score=45.30  Aligned_cols=27  Identities=22%  Similarity=0.272  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      ...-+.|+|++|.|||+++..|++.+.
T Consensus        42 ~k~n~lLvG~pGVGKTalv~~LA~ri~   68 (195)
T d1jbka_          42 TKNNPVLIGEPGVGKTAIVEGLAQRII   68 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCCeEEEecCCcccHHHHHHHHHHHH
Confidence            444678999999999999999999875

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.27  E-value=0.02  Score=50.78  Aligned_cols=25  Identities=32%  Similarity=0.372  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHh
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      .+--|+|+|.+|+|||||.++|.|.
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~   79 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGI   79 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            3456999999999999999999873

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=93.21  E-value=0.037  Score=47.92  Aligned_cols=33  Identities=27%  Similarity=0.340  Sum_probs=25.8

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhhccCCccEEEE
Q 024315          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYIL  136 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l  136 (269)
                      -.|.|=|+-|+||||+++.|...+... ...+.+
T Consensus         7 ~rI~iEG~iGsGKSTl~~~L~~~l~~~-~~v~~~   39 (333)
T d1p6xa_           7 VRIYLDGVYGIGKSTTGRVMASAASGG-SPTLYF   39 (333)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHSGGGCS-SCEEEE
T ss_pred             EEEEEECCccCCHHHHHHHHHHHhccC-CCeEEE
Confidence            357888999999999999999988533 344444

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.19  E-value=0.023  Score=44.19  Aligned_cols=21  Identities=19%  Similarity=0.275  Sum_probs=18.7

Q ss_pred             EEEEcCCCChHHHHHHHHHHh
Q 024315          105 IWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       105 i~l~G~sGsGKSTla~~L~~~  125 (269)
                      ++|+|.+|+|||||++.+..-
T Consensus        12 i~lvG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhhC
Confidence            789999999999999987753

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.13  E-value=0.028  Score=47.23  Aligned_cols=28  Identities=25%  Similarity=0.328  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      +...-+.|+|++|.|||+++..|+.++.
T Consensus        37 ~~k~n~lLVG~~GvGKTalv~~la~ri~   64 (268)
T d1r6bx2          37 RRKNNPLLVGESGVGKTAIAEGLAWRIV   64 (268)
T ss_dssp             SSSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CccCCcEEECCCCCcHHHHHHHHHHHHH
Confidence            3445678999999999999999999875

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=93.09  E-value=0.023  Score=48.09  Aligned_cols=23  Identities=30%  Similarity=0.388  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHh
Q 024315          103 CVIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      -.++|+|.+.+|||||+++|.+.
T Consensus        11 ~kiGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1          11 LKTGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHCC
Confidence            45999999999999999999974

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.08  E-value=0.063  Score=40.05  Aligned_cols=37  Identities=22%  Similarity=0.149  Sum_probs=27.7

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEEC
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD  137 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~  137 (269)
                      +|.+..++||..|||||-+-.....+...++..+.+.
T Consensus         1 ~G~L~li~GpMfsGKTt~Li~~~~~~~~~g~~v~~ik   37 (133)
T d1xbta1           1 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK   37 (133)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             CcEEEEEEecccCHHHHHHHHHHHHHHHcCCcEEEEe
Confidence            5889999999999999976666665655555555554

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.06  E-value=0.015  Score=44.70  Aligned_cols=21  Identities=24%  Similarity=0.333  Sum_probs=17.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHH
Q 024315          104 VIWITGLSGSGKSTLACALSQ  124 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~  124 (269)
                      -++++|.+|+|||||++.+..
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999987754

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.00  E-value=0.025  Score=43.82  Aligned_cols=23  Identities=26%  Similarity=0.335  Sum_probs=19.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhh
Q 024315          104 VIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      -++|+|.+|+|||+|++.+..--
T Consensus         4 KivliG~~~vGKTsli~r~~~~~   26 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAKDC   26 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            47899999999999998877643

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.82  E-value=0.032  Score=43.22  Aligned_cols=23  Identities=26%  Similarity=0.242  Sum_probs=19.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhh
Q 024315          104 VIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      .++++|.+|+|||||++.+...-
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~~~   29 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLTGS   29 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            47899999999999999887644

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.78  E-value=0.028  Score=43.86  Aligned_cols=23  Identities=17%  Similarity=0.189  Sum_probs=19.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhh
Q 024315          104 VIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      -++++|.+|+|||||++.+..--
T Consensus         5 KvvllG~~~vGKTSli~r~~~~~   27 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTTNK   27 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            37899999999999998887544

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=92.68  E-value=0.031  Score=46.73  Aligned_cols=23  Identities=48%  Similarity=0.479  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHh
Q 024315          103 CVIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      -.++|+|.+-+|||||+++|.+.
T Consensus         3 ~~~GivG~Pn~GKSTlf~~lt~~   25 (278)
T d1jala1           3 FKCGIVGLPNVGKSTLFNALTKA   25 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHT
T ss_pred             ceEEEECCCCCCHHHHHHHHHCC
Confidence            35899999999999999999964

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.65  E-value=0.024  Score=48.18  Aligned_cols=21  Identities=33%  Similarity=0.365  Sum_probs=19.1

Q ss_pred             EEEEcCCCChHHHHHHHHHHh
Q 024315          105 IWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       105 i~l~G~sGsGKSTla~~L~~~  125 (269)
                      |+|+|.+-+|||||+++|.+.
T Consensus         3 v~lvG~pn~GKStlfn~lt~~   23 (319)
T d1wxqa1           3 IGVVGKPNVGKSTFFSAATLV   23 (319)
T ss_dssp             EEEEECTTSSHHHHHHHHHC-
T ss_pred             EeEECCCCCCHHHHHHHHHCC
Confidence            799999999999999999764

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=92.65  E-value=0.031  Score=47.50  Aligned_cols=31  Identities=19%  Similarity=0.169  Sum_probs=27.7

Q ss_pred             eecCCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315           97 LLQQKGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus        97 l~~~~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      +.+-+|+..+|.|++|+|||||+..+++...
T Consensus        38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~   68 (289)
T d1xpua3          38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA   68 (289)
T ss_dssp             SCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             ccccCCCeeeEeCCCCCCHHHHHHHHHHHHh
Confidence            5678999999999999999999999998664

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=92.40  E-value=0.028  Score=40.63  Aligned_cols=37  Identities=19%  Similarity=0.131  Sum_probs=24.7

Q ss_pred             cCCCeEEEEEcCCCChHHHHH-HHHHHhhccCCccEEE
Q 024315           99 QQKGCVIWITGLSGSGKSTLA-CALSQALHWRGKLTYI  135 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla-~~L~~~l~~~~~g~i~  135 (269)
                      +++|+.+.|.+|.|||||..+ ..+...+...+...+.
T Consensus         4 l~~~~~~il~~~tGsGKT~~~~~~~~~~~~~~~~~vli   41 (140)
T d1yksa1           4 LKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLV   41 (140)
T ss_dssp             TSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEE
T ss_pred             HHcCCcEEEEcCCCCChhHHHHHHHHHHhhhcCceeee
Confidence            578999999999999999665 3444444333333333

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.21  E-value=0.036  Score=42.56  Aligned_cols=23  Identities=26%  Similarity=0.318  Sum_probs=19.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhh
Q 024315          104 VIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      -++|+|..|+|||||++.+...-
T Consensus         4 KivllG~~~vGKTsl~~r~~~~~   26 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKIIH   26 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Confidence            37899999999999999987544

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.12  E-value=0.039  Score=42.55  Aligned_cols=24  Identities=25%  Similarity=0.256  Sum_probs=20.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhc
Q 024315          104 VIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      -+.++|.+|+|||||++.+..--+
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~~~~   27 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRIIHG   27 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            378999999999999999976544

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.03  E-value=0.045  Score=43.70  Aligned_cols=22  Identities=32%  Similarity=0.372  Sum_probs=19.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHHh
Q 024315          104 VIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      -++++|..++|||||+.+|...
T Consensus         5 ni~iiGhvd~GKSTL~~~Ll~~   26 (204)
T d2c78a3           5 NVGTIGHVDHGKTTLTAALTYV   26 (204)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHHH
Confidence            4899999999999999999754

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=91.96  E-value=0.098  Score=39.42  Aligned_cols=38  Identities=21%  Similarity=0.107  Sum_probs=29.1

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEEC
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD  137 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~  137 (269)
                      +.|.+-.|+||..|||||-+-.....+...+...+.+.
T Consensus         5 ~~G~l~lI~GpMfSGKTteLi~~~~~~~~~g~~vl~i~   42 (141)
T d1xx6a1           5 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK   42 (141)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cceeEEEEEeccccHHHHHHHHHHHHhhhcCCcEEEEE
Confidence            57999999999999999977666666655555555553

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=91.56  E-value=0.046  Score=42.84  Aligned_cols=22  Identities=36%  Similarity=0.425  Sum_probs=19.9

Q ss_pred             EEEEcCCCChHHHHHHHHHHhh
Q 024315          105 IWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       105 i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      |+++|..++|||||+++|.+..
T Consensus         8 IaiiGhvd~GKSTL~~~L~g~~   29 (195)
T d1kk1a3           8 IGMVGHVDHGKTTLTKALTGVW   29 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEeccCCcHHHHHHHHHhhh
Confidence            7999999999999999998744

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=91.47  E-value=0.061  Score=46.87  Aligned_cols=26  Identities=35%  Similarity=0.419  Sum_probs=20.2

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      .+.+.+|.|++|+||||++..+...+
T Consensus       162 ~~~~~vI~G~pGTGKTt~i~~~l~~l  187 (359)
T d1w36d1         162 TRRISVISGGPGTGKTTTVAKLLAAL  187 (359)
T ss_dssp             TBSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred             cCCeEEEEcCCCCCceehHHHHHHHH
Confidence            35689999999999999886554333

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=91.47  E-value=0.064  Score=44.79  Aligned_cols=28  Identities=29%  Similarity=0.558  Sum_probs=25.0

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      ++-..++|.||.++||||++.+|...+.
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~~lg  129 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAHTVP  129 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            5567889999999999999999999874

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=91.43  E-value=0.083  Score=43.40  Aligned_cols=39  Identities=26%  Similarity=0.287  Sum_probs=27.5

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECC
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG  138 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g  138 (269)
                      ....-|+|.|+.|+||+++|+.|-..........+.++-
T Consensus        21 ~~~~pvlI~Ge~GtGK~~~A~~ih~~s~~~~~~~~~~~~   59 (247)
T d1ny5a2          21 CAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNV   59 (247)
T ss_dssp             TCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEET
T ss_pred             CCCCCEEEECCCCcCHHHHHHHHHHhcCCcccccccchh
Confidence            445558899999999999999997654333334455443

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=91.35  E-value=0.081  Score=42.00  Aligned_cols=27  Identities=22%  Similarity=0.227  Sum_probs=24.0

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      .+..+.|.|++|+||+|++..|+..+.
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~   40 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYVE   40 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHh
Confidence            567889999999999999999998774

>d1f60a2 b.44.1.1 (A:335-441) Elongation factor eEF-1alpha, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: Elongation factor/aminomethyltransferase common domain
superfamily: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
family: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
domain: Elongation factor eEF-1alpha, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.09  E-value=0.081  Score=38.08  Aligned_cols=48  Identities=17%  Similarity=0.091  Sum_probs=40.4

Q ss_pred             CCCcccCCCcceeeeeeccccc--Cccccccccceeeccccccccccchhhhccccccccccc
Q 024315           12 TRPAICSPSLAEVDFRTSVKMS--GFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQ   72 (269)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~f~~idr~~~~~~~~~~~~~~~~~gagmi~   72 (269)
                      .|..+..++.+.|+|..++|+.  +|.+++.+|.|.+=|.  +.           |++.|.+.
T Consensus        54 ~P~~l~~g~~a~v~i~~~~pi~vE~~~~~p~LGRf~lRd~--g~-----------TVAiG~V~  103 (107)
T d1f60a2          54 HPKFLKSGDAALVKFVPSKPMCVEAFSEYPPLGRFAVRDM--RQ-----------TVAVGVIK  103 (107)
T ss_dssp             SCSCBCTTCEEEEEEEESSCCCCCCTTTCGGGSEEEEEET--TE-----------EEEEEEEE
T ss_pred             CCcccCCCCEEEEEEEeCCCCEEeeccCCCCceeEEEEEC--CC-----------EEEEEEEE
Confidence            4455888999999999999999  9999999999998776  33           77777664

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=91.08  E-value=0.061  Score=43.25  Aligned_cols=28  Identities=18%  Similarity=0.287  Sum_probs=25.0

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      ++-..++|.||+++|||+++.+|.+.+.
T Consensus        51 PKkn~i~~~GP~~TGKS~f~~sl~~~l~   78 (205)
T d1tuea_          51 PKKNCLVFCGPANTGKSYFGMSFIHFIQ   78 (205)
T ss_dssp             TTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             CCceEEEEECCCCccHHHHHHHHHHHhC
Confidence            5567889999999999999999999884

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=91.06  E-value=0.078  Score=43.97  Aligned_cols=39  Identities=36%  Similarity=0.252  Sum_probs=33.1

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhhccCCccEEEECCeec
Q 024315          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l~g~~~  141 (269)
                      .+|++.|.=|.||||++-.|+..|...|+.+.++|-|.-
T Consensus         3 r~IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlID~DpQ   41 (289)
T d2afhe1           3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPK   41 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecCCC
Confidence            357789999999999999999888777888888988754

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=91.00  E-value=0.084  Score=41.86  Aligned_cols=23  Identities=30%  Similarity=0.430  Sum_probs=20.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhh
Q 024315          104 VIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      -++++|..++|||||+.+|.+.+
T Consensus         5 ni~iiGHvd~GKSTL~~~l~~~~   27 (196)
T d1d2ea3           5 NVGTIGHVDHGKTTLTAAITKIL   27 (196)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHH
Confidence            48999999999999999998754

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=90.75  E-value=0.067  Score=44.72  Aligned_cols=22  Identities=41%  Similarity=0.523  Sum_probs=19.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHHh
Q 024315          104 VIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      .++|+|..|+|||||+.+|...
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~   25 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYK   25 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Confidence            5899999999999999999643

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=90.72  E-value=0.068  Score=44.94  Aligned_cols=23  Identities=22%  Similarity=0.067  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHh
Q 024315          103 CVIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus       103 ~~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      ..++|+|..|||||||+.+|.-.
T Consensus         7 Rni~i~gh~~~GKTtL~e~ll~~   29 (276)
T d2bv3a2           7 RNIGIAAHIDAGKTTTTERILYY   29 (276)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            36899999999999999999643

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=90.65  E-value=0.062  Score=45.97  Aligned_cols=21  Identities=52%  Similarity=0.737  Sum_probs=18.3

Q ss_pred             CCCeEEEEEcCCCChHHHHHH
Q 024315          100 QKGCVIWITGLSGSGKSTLAC  120 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~  120 (269)
                      ..|.+-.+-|+||+|||||..
T Consensus        12 ~~~~~alfFGLSGTGKTTLs~   32 (313)
T d2olra1          12 EKGDVAVFFGLSGTGKTTLST   32 (313)
T ss_dssp             TTSCEEEEECSTTSSHHHHHC
T ss_pred             CCCCEEEEEccCCCCccccee
Confidence            568888999999999999863

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.57  E-value=0.052  Score=45.65  Aligned_cols=25  Identities=36%  Similarity=0.340  Sum_probs=22.2

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHhh
Q 024315          102 GCVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       102 g~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      =.+|.++|+-++|||||++.|.+..
T Consensus        32 v~vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          32 MVVVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             EEEEEEECCCCCCHHHHHHHHcCCC
Confidence            3589999999999999999998755

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=90.38  E-value=0.043  Score=47.42  Aligned_cols=24  Identities=29%  Similarity=0.349  Sum_probs=19.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHHhhc
Q 024315          104 VIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      .|.|=|+-||||||+++.|+..+.
T Consensus         6 rI~IEG~iGsGKTTl~~~La~~l~   29 (329)
T d1e2ka_           6 RVYIDGPHGMGKTTTTQLLVALGS   29 (329)
T ss_dssp             EEEECSCTTSSHHHHHHHHTC---
T ss_pred             EEEEECCcCCCHHHHHHHHHHHhC
Confidence            478889999999999999998774

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=90.31  E-value=0.07  Score=45.84  Aligned_cols=22  Identities=45%  Similarity=0.677  Sum_probs=18.8

Q ss_pred             cCCCeEEEEEcCCCChHHHHHH
Q 024315           99 QQKGCVIWITGLSGSGKSTLAC  120 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~  120 (269)
                      .+.|.+..+-|+||+|||||..
T Consensus        11 ~~~gd~alfFGLSGTGKTTLs~   32 (323)
T d1ii2a1          11 GKQGDVTVFFGLSGTGKTTLSA   32 (323)
T ss_dssp             CTTCCEEEEECCTTSSHHHHHC
T ss_pred             CCCCCEEEEEccCCCCccccee
Confidence            3578888899999999999973

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=90.15  E-value=0.096  Score=49.47  Aligned_cols=28  Identities=32%  Similarity=0.433  Sum_probs=24.8

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      -+..+.|.|.|.||||||+-+|.|.+.|
T Consensus        83 ~~~~QsIiisGeSGsGKTe~~k~il~yL  110 (684)
T d1lkxa_          83 SQENQCVIISGESGAGKTEASKKIMQFL  110 (684)
T ss_dssp             HCCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            4567899999999999999999998766

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=90.10  E-value=0.17  Score=37.86  Aligned_cols=35  Identities=26%  Similarity=0.386  Sum_probs=24.3

Q ss_pred             CeEEEEEcCCCChHHH-HHHHHHHhhccCCccEEEEC
Q 024315          102 GCVIWITGLSGSGKST-LACALSQALHWRGKLTYILD  137 (269)
Q Consensus       102 g~~i~l~G~sGsGKST-la~~L~~~l~~~~~g~i~l~  137 (269)
                      |.+-.++||..||||| |++.+.+ +...+...+.+.
T Consensus         2 G~L~~i~GpMfsGKTteLi~~~~~-~~~~~~kv~~ik   37 (139)
T d2b8ta1           2 GWIEFITGPMFAGKTAELIRRLHR-LEYADVKYLVFK   37 (139)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHH-HHHTTCCEEEEE
T ss_pred             cEEEEEEccccCHHHHHHHHHHHH-HHHCCCcEEEEE
Confidence            7788999999999999 5555444 444555555543

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.98  E-value=0.062  Score=44.82  Aligned_cols=26  Identities=19%  Similarity=0.110  Sum_probs=21.4

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      +.++ ++++|.-.||||||+++|.|.=
T Consensus        25 ~~P~-ivvvG~~SsGKSsliNaLlg~~   50 (299)
T d2akab1          25 DLPQ-IAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             CCCE-EEEEEBTTSCHHHHHHHHHTSC
T ss_pred             CCCe-EEEEcCCCCCHHHHHHHHhCCC
Confidence            3444 6689999999999999999843

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=89.93  E-value=0.071  Score=44.70  Aligned_cols=22  Identities=27%  Similarity=0.286  Sum_probs=19.8

Q ss_pred             EEEEcCCCChHHHHHHHHHHhh
Q 024315          105 IWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       105 i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      ++++|.-.||||||+++|.|.=
T Consensus        27 ivVvG~~ssGKSSliNaLlG~~   48 (306)
T d1jwyb_          27 IVVVGSQSSGKSSVLENIVGRD   48 (306)
T ss_dssp             EEEEECSSSSHHHHHHHHHTSC
T ss_pred             EEEEeCCCCCHHHHHHHHhCCC
Confidence            6789999999999999999854

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.79  E-value=0.16  Score=42.52  Aligned_cols=30  Identities=30%  Similarity=0.315  Sum_probs=26.4

Q ss_pred             eecCCCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315           97 LLQQKGCVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus        97 l~~~~g~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      +.+-+|+.++|.|++|+|||||+..++...
T Consensus        63 ~pigkGQr~~If~~~g~GKt~l~~~i~~~~   92 (276)
T d2jdid3          63 APYAKGGKIGLFGGAGVGKTVLIMELINNV   92 (276)
T ss_dssp             SCEETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             ccccCCCEEEeeCCCCCCHHHHHHHHHHHH
Confidence            556789999999999999999999998764

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=89.47  E-value=0.12  Score=49.12  Aligned_cols=29  Identities=31%  Similarity=0.375  Sum_probs=25.7

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      -++.+.|.|.|.||||||+-+|.+.+.|-
T Consensus       122 ~~~nQsIiisGeSGaGKTe~~k~il~yL~  150 (712)
T d1d0xa2         122 DRQNQSLLITGESGAGKTENTKKVIQYLA  150 (712)
T ss_dssp             HTCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             hCCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence            35788999999999999999999988774

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=89.36  E-value=0.12  Score=40.76  Aligned_cols=27  Identities=30%  Similarity=0.316  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      +|.--++++|.-.+|||||+..|.+..
T Consensus         6 ~p~ini~iiGhVd~GKSTL~~~L~~~~   32 (205)
T d2qn6a3           6 QPEVNIGVVGHVDHGKTTLVQAITGIW   32 (205)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHSCC
T ss_pred             CCCeEEEEEEccCCcHHHHHHHHHhhh
Confidence            444569999999999999999998644

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=89.33  E-value=0.08  Score=45.39  Aligned_cols=21  Identities=48%  Similarity=0.702  Sum_probs=18.2

Q ss_pred             CCCeEEEEEcCCCChHHHHHH
Q 024315          100 QKGCVIWITGLSGSGKSTLAC  120 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~  120 (269)
                      ..|.+..+-|+||+|||||..
T Consensus        12 ~~~~valffGLSGTGKTTLs~   32 (318)
T d1j3ba1          12 KEGDVAVFFGLSGTGKTTLST   32 (318)
T ss_dssp             TTCCEEEEEECTTSCHHHHTC
T ss_pred             CCCCEEEEEccCCCCcccccc
Confidence            467888999999999999864

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=89.18  E-value=0.13  Score=48.84  Aligned_cols=29  Identities=31%  Similarity=0.323  Sum_probs=25.6

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      -+..+.|.|.|.||||||+-+|.+.+.|-
T Consensus        88 ~~~~Q~IiisGeSGaGKTe~~k~il~yL~  116 (710)
T d1br2a2          88 DREDQSILCTGESGAGKTENTKKVIQYLA  116 (710)
T ss_dssp             HTCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             hCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            35678999999999999999999998873

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=89.00  E-value=0.075  Score=44.32  Aligned_cols=22  Identities=23%  Similarity=0.382  Sum_probs=15.3

Q ss_pred             EEEEcCCCChHHHHH-HHHHHhh
Q 024315          105 IWITGLSGSGKSTLA-CALSQAL  126 (269)
Q Consensus       105 i~l~G~sGsGKSTla-~~L~~~l  126 (269)
                      +.|.|++||||||++ ..++.++
T Consensus        27 ~lV~g~aGSGKTt~l~~ri~~ll   49 (318)
T d1pjra1          27 LLIMAGAGSGKTRVLTHRIAYLM   49 (318)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEecCCccHHHHHHHHHHHHH
Confidence            568899999999764 3344433

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=88.79  E-value=0.089  Score=46.30  Aligned_cols=26  Identities=23%  Similarity=0.284  Sum_probs=21.8

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          102 GCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       102 g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      ..-+.|+|++|.|||+++..|+.++.
T Consensus        43 k~n~llvG~~GvGKtaiv~~la~~i~   68 (387)
T d1qvra2          43 KNNPVLIGEPGVGKTAIVEGLAQRIV   68 (387)
T ss_dssp             CCCCEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCCCeEECCCCCCHHHHHHHHHHHHH
Confidence            33457899999999999999998774

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=88.67  E-value=0.13  Score=49.32  Aligned_cols=29  Identities=31%  Similarity=0.361  Sum_probs=25.7

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      -+..+.|.|.|.||||||+-++.+.+.|-
T Consensus       120 ~~~~QsIiisGeSGaGKTe~~K~il~yL~  148 (794)
T d2mysa2         120 DRENQSILITGESGAGKTVNTKRVIQYFA  148 (794)
T ss_dssp             HTCCEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             cCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            45678999999999999999999998874

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=87.96  E-value=0.15  Score=48.88  Aligned_cols=28  Identities=29%  Similarity=0.284  Sum_probs=25.2

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      ...+.|.|.|.||||||.-+|.+.+.|-
T Consensus       119 ~~nQ~IiisGESGaGKTe~~K~il~yL~  146 (789)
T d1kk8a2         119 RENQSCLITGESGAGKTENTKKVIMYLA  146 (789)
T ss_dssp             TSEEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            5678999999999999999999998874

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=87.84  E-value=0.17  Score=47.97  Aligned_cols=28  Identities=25%  Similarity=0.316  Sum_probs=25.2

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHhhc
Q 024315          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~~~l~  127 (269)
                      +..+.|.|.|.||||||+-.+.+.+.|.
T Consensus        92 ~~~Q~IiisGeSGsGKTe~~k~il~~l~  119 (730)
T d1w7ja2          92 ERNQSIIVSGESGAGKTVSAKYAMRYFA  119 (730)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            5678899999999999999999998773

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=87.78  E-value=0.12  Score=37.74  Aligned_cols=24  Identities=38%  Similarity=0.234  Sum_probs=19.1

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHH
Q 024315          100 QKGCVIWITGLSGSGKSTLACALS  123 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~~L~  123 (269)
                      |+.....|.+|.|||||+++-.+.
T Consensus         6 ~~~~~~ll~apTGsGKT~~~~~~~   29 (136)
T d1a1va1           6 QSFQVAHLHAPTGSGKSTKVPAAY   29 (136)
T ss_dssp             SSCEEEEEECCTTSCTTTHHHHHH
T ss_pred             cCCCEEEEEeCCCCCHHHHHHHHH
Confidence            456778899999999999875543

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=87.68  E-value=0.13  Score=42.25  Aligned_cols=22  Identities=18%  Similarity=0.344  Sum_probs=15.2

Q ss_pred             EEEEcCCCChHHHHH-HHHHHhh
Q 024315          105 IWITGLSGSGKSTLA-CALSQAL  126 (269)
Q Consensus       105 i~l~G~sGsGKSTla-~~L~~~l  126 (269)
                      +.|.|++||||||++ ..+..++
T Consensus        17 ~lI~g~aGTGKTt~l~~rv~~ll   39 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVITNKIAHLI   39 (306)
T ss_dssp             EEECCCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEeeCCccHHHHHHHHHHHHH
Confidence            467899999999754 4444433

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=85.96  E-value=0.24  Score=39.89  Aligned_cols=22  Identities=32%  Similarity=0.277  Sum_probs=19.3

Q ss_pred             EEEEcCCCChHHHHHHHHHHhh
Q 024315          105 IWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       105 i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      ++++|.-++|||||+..|....
T Consensus        12 i~viGHVd~GKSTL~~~Ll~~~   33 (222)
T d1zunb3          12 FLTCGNVDDGKSTLIGRLLHDS   33 (222)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEcCCCCCHHHHHHHHHHHc
Confidence            6899999999999999996544

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=85.29  E-value=0.22  Score=39.90  Aligned_cols=21  Identities=33%  Similarity=0.347  Sum_probs=18.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHH
Q 024315          104 VIWITGLSGSGKSTLACALSQ  124 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~  124 (269)
                      -++++|.-++|||||+..|..
T Consensus         5 Ni~viGHVd~GKTTL~~~Ll~   25 (224)
T d1jnya3           5 NLIVIGHVDHGKSTLVGRLLM   25 (224)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEecCCCCHHHHHHHHHH
Confidence            489999999999999998854

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=84.98  E-value=0.27  Score=40.57  Aligned_cols=26  Identities=31%  Similarity=0.382  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315          101 KGCVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus       101 ~g~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      .+-.++++|.+.+|||||++.|.+.-
T Consensus       111 ~~~~v~vvG~PNvGKSsliN~L~~~~  136 (273)
T d1puja_         111 RAIRALIIGIPNVGKSTLINRLAKKN  136 (273)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CceEEEEEecCccchhhhhhhhhccc
Confidence            45569999999999999999998854

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.80  E-value=0.2  Score=40.14  Aligned_cols=38  Identities=26%  Similarity=0.368  Sum_probs=24.6

Q ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHHhhccCCccEEEE
Q 024315           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL  136 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKSTla~~L~~~l~~~~~g~i~l  136 (269)
                      +-.|+-+.+++|.|||||+.+-...-.+...+...+++
T Consensus        55 ~l~g~~~~i~apTGsGKT~~~~~~~~~~~~~~~rvliv   92 (237)
T d1gkub1          55 ILRKESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVI   92 (237)
T ss_dssp             HHTTCCEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEE
T ss_pred             HHCCCCEEEEecCCChHHHHHHHHHHHHHHhcCeEEEE
Confidence            34788888999999999987655443332333333333

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=84.56  E-value=0.19  Score=41.26  Aligned_cols=28  Identities=21%  Similarity=0.316  Sum_probs=20.9

Q ss_pred             cCCCeEEEEEcCCCChHHH--HHHHHHHhh
Q 024315           99 QQKGCVIWITGLSGSGKST--LACALSQAL  126 (269)
Q Consensus        99 ~~~g~~i~l~G~sGsGKST--la~~L~~~l  126 (269)
                      +++|+.+.+.+|.|||||+  +...+...+
T Consensus         6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~   35 (305)
T d2bmfa2           6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAI   35 (305)
T ss_dssp             SSTTCEEEECCCTTSSTTTTHHHHHHHHHH
T ss_pred             hhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            4688999999999999996  334444444

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.41  E-value=0.26  Score=38.36  Aligned_cols=21  Identities=24%  Similarity=0.245  Sum_probs=16.6

Q ss_pred             CCCeEEEEEcCCCChHHHHHH
Q 024315          100 QKGCVIWITGLSGSGKSTLAC  120 (269)
Q Consensus       100 ~~g~~i~l~G~sGsGKSTla~  120 (269)
                      ..|.-+.++.|+|||||+.+.
T Consensus        38 ~~~~~~il~apTGsGKT~~a~   58 (202)
T d2p6ra3          38 FSGKNLLLAMPTAAGKTLLAE   58 (202)
T ss_dssp             TTCSCEEEECSSHHHHHHHHH
T ss_pred             HcCCCEEEEcCCCCchhHHHH
Confidence            345667899999999998763

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.96  E-value=0.27  Score=40.02  Aligned_cols=21  Identities=33%  Similarity=0.292  Sum_probs=18.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHH
Q 024315          104 VIWITGLSGSGKSTLACALSQ  124 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~  124 (269)
                      -++++|..++|||||...|.-
T Consensus         8 Ni~iiGHvD~GKsTl~~~ll~   28 (239)
T d1f60a3           8 NVVVIGHVDSGKSTTTGHLIY   28 (239)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            589999999999999998864

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=82.90  E-value=0.37  Score=40.20  Aligned_cols=30  Identities=20%  Similarity=0.163  Sum_probs=25.3

Q ss_pred             eecCCCeEEEEEcCCCChHHHHHHHHHHhh
Q 024315           97 LLQQKGCVIWITGLSGSGKSTLACALSQAL  126 (269)
Q Consensus        97 l~~~~g~~i~l~G~sGsGKSTla~~L~~~l  126 (269)
                      +.+-+|+.+.|.|++|+|||+|+..+....
T Consensus        62 ~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~   91 (276)
T d1fx0a3          62 IPVGRGQRELIIGDRQTGKTAVATDTILNQ   91 (276)
T ss_dssp             SCCBTTCBCBEEESSSSSHHHHHHHHHHTC
T ss_pred             ccccCCceEeeccCCCCChHHHHHHHHhhh
Confidence            566789999999999999999998765544

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=82.05  E-value=0.39  Score=36.86  Aligned_cols=20  Identities=25%  Similarity=0.346  Sum_probs=15.4

Q ss_pred             EEEEcCCCChHHHHHHHHHH
Q 024315          105 IWITGLSGSGKSTLACALSQ  124 (269)
Q Consensus       105 i~l~G~sGsGKSTla~~L~~  124 (269)
                      ..+++|.|||||.++-.++.
T Consensus        26 ~lv~~pTGsGKT~i~~~~~~   45 (200)
T d1wp9a1          26 CLIVLPTGLGKTLIAMMIAE   45 (200)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEeCCCCcHHHHHHHHHH
Confidence            45789999999987665554

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=80.16  E-value=0.39  Score=40.27  Aligned_cols=29  Identities=21%  Similarity=0.182  Sum_probs=25.2

Q ss_pred             eecCCCeEEEEEcCCCChHHHHHHHHHHh
Q 024315           97 LLQQKGCVIWITGLSGSGKSTLACALSQA  125 (269)
Q Consensus        97 l~~~~g~~i~l~G~sGsGKSTla~~L~~~  125 (269)
                      +.+-+|+.+.|.|++|+|||+++..+...
T Consensus        63 ~pig~GQr~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          63 VPIGRGQRELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             SCCBTTCBCEEEESTTSSHHHHHHHHHHH
T ss_pred             cCccCCCEEEeecCCCCChHHHHHHHHHh
Confidence            56789999999999999999998877644

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=80.04  E-value=0.42  Score=37.25  Aligned_cols=21  Identities=48%  Similarity=0.444  Sum_probs=18.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHH
Q 024315          104 VIWITGLSGSGKSTLACALSQ  124 (269)
Q Consensus       104 ~i~l~G~sGsGKSTla~~L~~  124 (269)
                      ++.|+|.+.||||..|..|+.
T Consensus         1 iiLVtGGarSGKS~~AE~l~~   21 (180)
T d1c9ka_           1 MILVTGGARSGKSRHAEALIG   21 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHC
T ss_pred             CEEEECCCCccHHHHHHHHHh
Confidence            368999999999999998764