Citrus Sinensis ID: 024325

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
Protein Sequence
MEKNVEMSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFAKV
Secondary Structure (PSIPRED)
cccccccccHHHHHcccccHHHHHHHHHHccccccHHHHHcccccEEEccccccccccccHHHHHHHHccccccEEEEEEcccccccccccccEEEEEccccccHHHHHHHHHcccccEEcccccccccEEEEEEEcccEEEEEccccccccccHHHHHHHHHHHHHHHHccccccEEEEEEEccccccHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHHHHHHHcccccccEEEEEccccccHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccEEEccccEEEEccccHHHHHHHHHHHcccccHHHHHHcccccccccccccccccccHHHHHHHccccccccEEEEEccccHHcccccccEEEEEccccccHHHHHHHHHccHccccccccccccEEEEEEEEcccEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHcEEEEEEEccccccHHHHHHHHHHHHccccEEEEEEcccccccHHHHHHHHHHHHHHHHccccccEEEEEEccccccHHHHHHHHHHHHcHccc
Coil and Loop (DISEMBL)
meknvemsknaqfraiqpspsilsfvednllgrrrpielrragynielsapldnipfstsseRERIEENIFRNKLEFFAAAkvsssfpapdlpeiafagrsnvgksSMLNALTRQwgvvrtsdkpgltqtINFFKLGTKlclvdlpgygfaYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIdtkwgvkprdHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAnnslvqpvmmvssksgagiRSLRTVLSKIARFAKV
Flexible Loop (DISEMBL)
MEKNVemsknaqfraiqpspsilsfvednllGRRRPIELRragynielsapldnipfstsSERERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYvstrvslkrvcllidtkwgvkprdhELISlmersqtkyQVVLTKTDTVFPIDVARRAMQIEESlkannslvqpvmmvssksgagirslRTVLSKIARFAKV
Low Complexity Region (SEG)
MEKNVEMSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPfstssererieenifrnKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFAKV
Disordered region (IsUnstruct)
*********************ILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNI************ENIFRNKLEFFAAAKVS*******LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE*****************************VL*********
Disordered Region (DISOPRED)
****************QPS*SILSFVEDNLL*****************SA***************IEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFAKV
Disordered Region (DISEMBL)
**********AQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFAKV
Disordered Region (DISPRO)
***NVEMSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFAK*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEKNVEMSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFAKV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	269	2.2.26 [Sep-21-2011]
Q1GJX8	216	Probable GTP-binding prot	yes	no	0.799	0.995	0.408	4e-41
Q2GAU7	217	Probable GTP-binding prot	yes	no	0.762	0.944	0.397	3e-39
Q16AA3	216	Probable GTP-binding prot	yes	no	0.799	0.995	0.399	5e-39
Q3IYY4	217	Probable GTP-binding prot	yes	no	0.795	0.986	0.396	5e-39
Q5FPX9	227	Probable GTP-binding prot	yes	no	0.721	0.854	0.412	2e-38
Q5LW13	217	Probable GTP-binding prot	yes	no	0.791	0.981	0.393	3e-38
Q9RNL6	212	GTP-binding protein EngB	yes	no	0.710	0.900	0.388	3e-36
Q89BP9	217	Probable GTP-binding prot	yes	no	0.721	0.894	0.413	1e-35
Q1GN74	219	Probable GTP-binding prot	yes	no	0.776	0.954	0.380	2e-35
Q9ZG89	199	GTP-binding protein EngB	yes	no	0.717	0.969	0.388	2e-35

>sp|Q1GJX8|ENGB_RUEST Probable GTP-binding protein EngB OS=Ruegeria sp. (strain TM1040) GN=engB PE=3 SV=1

 Score =  168 bits (426), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 89/218 (40%), Positives = 133/218 (61%), Gaps = 3/218 (1%)

Query: 46  IELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGK 105
           ++L  PL   P + + E  R    +F  + EF       S  P  D  E+ FAGRSNVGK
Sbjct: 1   MQLPFPLAEEPDAAAMETGR---KLFAGQSEFLKGVVAMSGLPPADRIEVCFAGRSNVGK 57

Query: 106 SSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165
           SS++NALT   G+ R S+ PG TQ INFF  G +L LVDLPGYG+A A   V + W+ L+
Sbjct: 58  SSLINALTGTKGLARASNTPGRTQEINFFTQGPELYLVDLPGYGYANAPLAVVEKWQRLL 117

Query: 166 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRA 225
           K+Y+S R +L+R  +LIDT+ GVK  D E++ L++ S   +QVV+TK D V   D A+  
Sbjct: 118 KQYLSGRQTLRRAFVLIDTRHGVKKVDEEIMKLLDTSAVTFQVVMTKADKVKEKDRAKIL 177

Query: 226 MQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 263
            Q+ ++L  + +    +++ SS+ G GI +LR++++ +
Sbjct: 178 DQVRDALSKHPAAYPEIVLTSSEKGDGIATLRSIIAHL 215

Necessary for normal cell division and for the maintenance of normal septation.
Silicibacter sp. (strain TM1040) (taxid: 292414)

>sp|Q2GAU7|ENGB_NOVAD Probable GTP-binding protein EngB OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=engB PE=3 SV=1

 Score =  162 bits (409), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 83/209 (39%), Positives = 131/209 (62%), Gaps = 4/209 (1%)

Query: 56  PFSTSSERERIEEN--IFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALT 113
           P   ++ +E IE+   +F  ++EF  +A      P PD+PEIAFAGRSNVGKSS+LNALT
Sbjct: 3   PEEQAAHQELIEQARLLFAGRVEFLKSAPALKFLPDPDVPEIAFAGRSNVGKSSLLNALT 62

Query: 114 RQWGVVRTSDKPGLTQTINFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171
            +  + RTS  PG TQ +N+F++G  T+L LVD+PGYGFA A  +V + W  LV++++  
Sbjct: 63  GRKSLARTSVTPGRTQELNYFEVGEPTRLRLVDMPGYGFAKAPPKVVETWRRLVRDFLRG 122

Query: 172 RVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEES 231
           RV LKR  LLID++ GVKP D +++ +++ +   Y++VLTK D +   ++ +   +   +
Sbjct: 123 RVVLKRTLLLIDSRHGVKPVDDDMMQMLDEAGVGYRIVLTKADKIKASELEKVTAETIAA 182

Query: 232 LKANNSLVQPVMMVSSKSGAGIRSLRTVL 260
            +   +    +++ SS+   GI  LR  +
Sbjct: 183 ARKRTAAYPEIIVTSSEKKMGIEELRAAV 211

Necessary for normal cell division and for the maintenance of normal septation.

Novosphingobium aromaticivorans (strain DSM 12444) (taxid: 279238)

>sp|Q16AA3|ENGB_ROSDO Probable GTP-binding protein EngB OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=engB PE=3 SV=1

 Score =  161 bits (407), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 87/218 (39%), Positives = 131/218 (60%), Gaps = 3/218 (1%)

Query: 46  IELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGK 105
           ++L  P+   P   S E+ R+   +F    EF       S  P PD  E+ FAGRSNVGK
Sbjct: 1   MQLPFPVAQDPDQHSLEKGRL---LFAGDTEFVKGVVAMSGLPDPDRLEVCFAGRSNVGK 57

Query: 106 SSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165
           SS++NALT + G+ R S+ PG TQ INFF  G    LVDLPGYG+A A   V + W+ L+
Sbjct: 58  SSLINALTGRKGLARASNTPGRTQEINFFTAGESHYLVDLPGYGYANAPVPVVEKWQRLL 117

Query: 166 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRA 225
           K+Y+S R +L+R  +LID + GVK  D E++SL++ +   +QVVLTK D V   +  +  
Sbjct: 118 KQYLSGRQTLRRAFVLIDARHGVKKVDEEILSLLDSAAVTFQVVLTKADKVKEKEREKVL 177

Query: 226 MQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 263
            Q+  +L  + +    +++ SS+ G GI +LR++++ +
Sbjct: 178 DQVRTALSKHPAAFPELVITSSEKGWGIPTLRSIITDL 215

Necessary for normal cell division and for the maintenance of normal septation.

Roseobacter denitrificans (strain ATCC 33942 / OCh 114) (taxid: 375451)

>sp|Q3IYY4|ENGB_RHOS4 Probable GTP-binding protein EngB OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=engB PE=3 SV=1

 Score =  161 bits (407), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 86/217 (39%), Positives = 128/217 (58%), Gaps = 3/217 (1%)

Query: 48  LSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSS 107
           L  PL   P   S E  R+   +F    +F        + P  D  E+ FAGRSNVGKSS
Sbjct: 4   LPFPLSPEPDEASREAGRL---LFAGPCDFVKGVTTMEALPPADRIEVCFAGRSNVGKSS 60

Query: 108 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167
           ++NALT +  + R S+ PG TQ IN+F LG    LVDLPGYG+A A + +   W+ L+K 
Sbjct: 61  LINALTGRKALARASNTPGRTQEINYFALGPSRYLVDLPGYGYAEAPKPIVQRWQRLLKG 120

Query: 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQ 227
           Y++ R +L+R  +LIDT+ GVK  D E+++L++RS   +QVV+TK D V   +      Q
Sbjct: 121 YLAGRQTLRRAFVLIDTRHGVKSVDEEILTLLDRSAVTFQVVMTKADKVSQAEREAVLDQ 180

Query: 228 IEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 264
           +  +LK + +    ++M SS+ G GI +LRT+++ + 
Sbjct: 181 VRGALKKHPAAYPELVMTSSEKGMGIETLRTIVATLG 217

Necessary for normal cell division and for the maintenance of normal septation.

Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) (taxid: 272943)

>sp|Q5FPX9|ENGB_GLUOX Probable GTP-binding protein EngB OS=Gluconobacter oxydans (strain 621H) GN=engB PE=3 SV=1

 Score =  159 bits (402), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 82/199 (41%), Positives = 129/199 (64%), Gaps = 5/199 (2%)

Query: 70  IFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ 129
           +F  + EFF  ++     P    PE+AFAGRSNVGKSS++NALT +  + R S +PG T+
Sbjct: 20  LFAGECEFFFGSQKIDQLPPVGRPEVAFAGRSNVGKSSIINALTGRRALARASSEPGRTK 79

Query: 130 TINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK 189
            +NFF L  +L LVD+PGYGFA A + VK+ W++++  Y+  R +L+RV LL+D +  +K
Sbjct: 80  QLNFFNLADRLSLVDMPGYGFAKAAKSVKEDWQDMMFAYLRGRTTLERVILLLDARIELK 139

Query: 190 PRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP-VMMVSSK 248
             D +++ L++R+   +Q+VLTK D V P  +A +  ++ E+L   ++   P ++  SS+
Sbjct: 140 ASDKDVMELLDRAAVVFQIVLTKCDQVKPKALAAKIAEV-EALALKHAAAYPRIIATSSE 198

Query: 249 SGAGIRSLRTVLSKIARFA 267
           +G GI  LR   ++IARFA
Sbjct: 199 TGFGIEDLR---AEIARFA 214

Necessary for normal cell division and for the maintenance of normal septation.

Gluconobacter oxydans (strain 621H) (taxid: 290633)

>sp|Q5LW13|ENGB_RUEPO Probable GTP-binding protein EngB OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) GN=engB PE=3 SV=1

 Score =  159 bits (401), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 85/216 (39%), Positives = 129/216 (59%), Gaps = 3/216 (1%)

Query: 48  LSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSS 107
           L  P+   P + ++E  R    +F    EF       S  P  D  E+ FAGRSNVGKSS
Sbjct: 4   LPFPVAEEPDAFTAETGR---KLFAGPSEFVKGVVAMSGLPPADRVEVCFAGRSNVGKSS 60

Query: 108 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167
           ++NALT   G+ R S+ PG TQ INFF  G +L LVDLPGYG+A A  +V + W++L+K+
Sbjct: 61  LINALTGTKGLARASNTPGRTQEINFFTQGPELYLVDLPGYGYANAPLKVVEKWQKLLKQ 120

Query: 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQ 227
           Y+S R +L+R  +LID + GVK  D E++ L++ S   +Q VLTK D V   +  +   Q
Sbjct: 121 YLSGRQTLRRAFVLIDARHGVKAVDDEIMKLLDTSAVTFQCVLTKADKVKAAERDKVLAQ 180

Query: 228 IEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 263
           +  +L  + +    +++ SS+ G GI +LR++++ +
Sbjct: 181 VRAALAKHPAAYPEIVLTSSEKGDGIATLRSIIAHL 216

Necessary for normal cell division and for the maintenance of normal septation.

Silicibacter pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) (taxid: 246200)

>sp|Q9RNL6|ENGB_ZYMMO GTP-binding protein EngB OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) GN=engB PE=3 SV=1

 Score =  152 bits (383), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 75/193 (38%), Positives = 118/193 (61%), Gaps = 2/193 (1%)

Query: 70  IFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ 129
           +F   + F  +A      PAP  PE+AFAGRSNVGKSS++NALT +  + R S  PG TQ
Sbjct: 15  LFAGAVNFLKSAPALEFLPAPTAPEVAFAGRSNVGKSSLINALTNRNSLARASTTPGRTQ 74

Query: 130 TINFFKLGTKLC--LVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG 187
            +NFF +G  L   LVD+PGYGFA A ++V   W+ L+ +Y+  R  L+R  +LID++ G
Sbjct: 75  ELNFFDVGEPLQMRLVDMPGYGFAKAPKDVVKRWKWLINDYLRGRAVLRRSLILIDSRHG 134

Query: 188 VKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS 247
           +K  D +L+ +++ +   Y+VVLTK+D +  +++ +    I E ++ + +    ++  SS
Sbjct: 135 IKDVDRDLMKMLDDAAISYRVVLTKSDKIKAVELEKTVKAITEEMRKHPAAFPEIIATSS 194

Query: 248 KSGAGIRSLRTVL 260
           + G GI  LR  +
Sbjct: 195 EKGTGIAELRAAV 207

Necessary for normal cell division and for the maintenance of normal septation.

Zymomonas mobilis (strain ATCC 31821 / ZM4 / CP4) (taxid: 264203)

>sp|Q89BP9|ENGB_BRAJA Probable GTP-binding protein EngB OS=Bradyrhizobium japonicum (strain USDA 110) GN=engB PE=3 SV=1

 Score =  149 bits (377), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 81/196 (41%), Positives = 120/196 (61%), Gaps = 2/196 (1%)

Query: 70  IFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ 129
           +F    +F  A+    + P  D  EIAFAGRSNVGKSS++NALT +  + RTS  PG TQ
Sbjct: 16  LFARDWQFIWASPSIQTLPPMDGVEIAFAGRSNVGKSSLINALTGRNALARTSHTPGRTQ 75

Query: 130 TINFFKLGTK--LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG 187
            + FF++  K  L LVD+PGYG+A A +    +W EL+ +++  R SL RV +LID + G
Sbjct: 76  ELIFFEVPGKKDLRLVDMPGYGYAKAPKSQVASWTELIHKFLLGRASLARVYVLIDARHG 135

Query: 188 VKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS 247
           +K  D E++  ++RS   YQ+VLTK D V P ++A R  + E +L  + +    V+  SS
Sbjct: 136 LKDVDLEILGTLDRSAVSYQIVLTKADQVKPSELASRIAETEAALAKHPAAFPNVLATSS 195

Query: 248 KSGAGIRSLRTVLSKI 263
           +S  G+  LR  ++K+
Sbjct: 196 RSATGMAELRAAMAKL 211

Necessary for normal cell division and for the maintenance of normal septation.

Bradyrhizobium japonicum (strain USDA 110) (taxid: 224911)

>sp|Q1GN74|ENGB_SPHAL Probable GTP-binding protein EngB OS=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) GN=engB PE=3 SV=1

 Score =  149 bits (377), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 81/213 (38%), Positives = 121/213 (56%), Gaps = 4/213 (1%)

Query: 52  LDNIPFSTSSERERIEE--NIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSML 109
           +  I     ++ ER E    +F   + F  +A      P P +PEIAFAGRSNVGKSS+L
Sbjct: 1   MSEIELEPGADPERAERARKLFSGPIAFLKSAPALQHLPVPSVPEIAFAGRSNVGKSSLL 60

Query: 110 NALTRQWGVVRTSDKPGLTQTINFFKLGTK--LCLVDLPGYGFAYAKEEVKDAWEELVKE 167
           NALT + G+ RTS  PG TQ +N+F +G      LVD+PGYGFA A ++V   W  L+ +
Sbjct: 61  NALTNRNGLARTSVTPGRTQELNYFDVGEPPVFRLVDMPGYGFAKAPKDVVRKWRFLIND 120

Query: 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQ 227
           Y+  R  LKR  +LID++ G+K  D +++ +++ +   Y++VLTK D +    +A     
Sbjct: 121 YLRGRQVLKRTLVLIDSRHGIKDVDRDVLEMLDTAAVSYRLVLTKADKIKASALADVHAA 180

Query: 228 IEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL 260
            E   + + +    V+  SS+ G GI  LRT +
Sbjct: 181 TEAEARKHPAAHPEVIATSSEKGMGIAELRTAV 213

Necessary for normal cell division and for the maintenance of normal septation.

Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) (taxid: 317655)

>sp|Q9ZG89|ENGB_CAUCR GTP-binding protein EngB OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=engB PE=3 SV=2

 Score =  149 bits (376), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 75/193 (38%), Positives = 115/193 (59%)

Query: 71  FRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT 130
           F   + F   A    + P  DLPE+AFAGRSNVGKSS++N L  Q  + R S++PG T+ 
Sbjct: 3   FAQPVSFIMGAVRMDAMPPSDLPEVAFAGRSNVGKSSLINGLVNQKYLARASNEPGRTRE 62

Query: 131 INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKP 190
           INFF L  K+ LVDLPGYGFA     + D +++L + Y+  R +LKRV +LID + G+K 
Sbjct: 63  INFFLLAEKVRLVDLPGYGFARVSRSIADKFQDLGRAYLRGRANLKRVYVLIDARHGLKK 122

Query: 191 RDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSG 250
            D E +  ++ +   YQ+VLTK D + P +V +   + ++++    +    V+  SS+ G
Sbjct: 123 VDLEALDALDVAAVSYQIVLTKADKIKPAEVDKVVAETQKAIAKRAAAFPRVLATSSEKG 182

Query: 251 AGIRSLRTVLSKI 263
            G+  LR  + ++
Sbjct: 183 LGMPELRAEIVRL 195

Necessary for normal cell division and for the maintenance of normal septation.

Caulobacter crescentus (strain ATCC 19089 / CB15) (taxid: 190650)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
255553339	489	GTP binding protein, putative [Ricinus c	0.977	0.537	0.877	1e-137
224145468	305	predicted protein [Populus trichocarpa]	0.996	0.878	0.881	1e-135
356569473	540	PREDICTED: uncharacterized protein LOC10	0.973	0.485	0.870	1e-133
356537641	535	PREDICTED: uncharacterized protein LOC10	0.973	0.489	0.870	1e-132
42573726	465	putative GTP-binding protein CGPA [Arabi	0.988	0.572	0.849	1e-130
297793371	467	predicted protein [Arabidopsis lyrata su	0.988	0.569	0.842	1e-130
343172533	343	putative GTP-binding protein, partial [S	0.981	0.769	0.844	1e-129
343172535	343	putative GTP-binding protein, partial [S	0.981	0.769	0.840	1e-129
449439155	535	PREDICTED: uncharacterized protein LOC10	0.981	0.493	0.859	1e-126
449516736	373	PREDICTED: probable GTP-binding protein	0.981	0.707	0.848	1e-123

>gi|255553339|ref|XP_002517711.1| GTP binding protein, putative [Ricinus communis] gi|223543109|gb|EEF44643.1| GTP binding protein, putative [Ricinus communis]

 Score =  493 bits (1269), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 243/277 (87%), Positives = 252/277 (90%), Gaps = 14/277 (5%)

Query: 7   MSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERI 66
           MSKNAQFRAI+PSPSILSFVEDNLLGRRR IEL+RAGYNIELSAPLDNIP STSSERERI
Sbjct: 213 MSKNAQFRAIKPSPSILSFVEDNLLGRRRLIELKRAGYNIELSAPLDNIPLSTSSERERI 272

Query: 67  EENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG 126
           EENIFRNKL FFAAAKVSSSFP PDLPEIAFAGRSNVGKSS+LNALTRQWGV RTSDKPG
Sbjct: 273 EENIFRNKLTFFAAAKVSSSFPPPDLPEIAFAGRSNVGKSSLLNALTRQWGVARTSDKPG 332

Query: 127 LTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW 186
           LTQTINFF LG KLCLVDLPGYGFAYAKEEVKDAWE+LVKEYVSTRV LKRVCLLIDTKW
Sbjct: 333 LTQTINFFSLGPKLCLVDLPGYGFAYAKEEVKDAWEDLVKEYVSTRVGLKRVCLLIDTKW 392

Query: 187 GVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV---- 242
           G+KPRDHELI+LMERSQTKYQ+VLTKTD VFPIDVARRAMQIEESLKAN S+VQPV    
Sbjct: 393 GMKPRDHELINLMERSQTKYQIVLTKTDVVFPIDVARRAMQIEESLKANKSIVQPVFFDV 452

Query: 243 ----------MMVSSKSGAGIRSLRTVLSKIARFAKV 269
                     MMVSSKSGAGIRSLRTVLSKIA FAK+
Sbjct: 453 SQSNYVVFTQMMVSSKSGAGIRSLRTVLSKIAWFAKL 489

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145468|ref|XP_002325653.1| predicted protein [Populus trichocarpa] gi|222862528|gb|EEF00035.1| predicted protein [Populus trichocarpa]

 Score =  486 bits (1250), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 237/269 (88%), Positives = 251/269 (93%), Gaps = 1/269 (0%)

Query: 1   MEKNVEMSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTS 60
           +EK+  MS NAQFRAIQPSPSILSFVEDN LGRRR IEL+RAGYN +LSAPLDNIPFSTS
Sbjct: 38  LEKDAGMSMNAQFRAIQPSPSILSFVEDNFLGRRRSIELKRAGYNTDLSAPLDNIPFSTS 97

Query: 61  SERERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVR 120
           SERERIEENIFRNKL FFAAAKVSSSFP P LPEIAFAGRSNVGKSS+LN+LTRQWGV R
Sbjct: 98  SERERIEENIFRNKLTFFAAAKVSSSFPPPGLPEIAFAGRSNVGKSSLLNSLTRQWGVAR 157

Query: 121 TSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCL 180
           TSDKPGLTQTINFF+LG  +CLVDLPGYGFAYAKEEVKD+WEELVKEYVS RV+LKRVCL
Sbjct: 158 TSDKPGLTQTINFFELGN-VCLVDLPGYGFAYAKEEVKDSWEELVKEYVSMRVNLKRVCL 216

Query: 181 LIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ 240
           LIDTKWG+KPRD ELI LMER QTKYQVV+TKTD VFPIDVARRAMQIEESLKAN SLVQ
Sbjct: 217 LIDTKWGMKPRDRELIDLMERYQTKYQVVMTKTDLVFPIDVARRAMQIEESLKANKSLVQ 276

Query: 241 PVMMVSSKSGAGIRSLRTVLSKIARFAKV 269
           PVMMVSSKSGAGIRS+RTVLSKIARFAK+
Sbjct: 277 PVMMVSSKSGAGIRSVRTVLSKIARFAKL 305

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569473|ref|XP_003552925.1| PREDICTED: uncharacterized protein LOC100799694 [Glycine max]

 Score =  478 bits (1231), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 228/262 (87%), Positives = 246/262 (93%)

Query: 7   MSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERI 66
           MSKNAQFRAIQPSP ILSFVE NLLGRRR I+L+RAGYNI+LSAPLDNIPFS+SSERE+I
Sbjct: 277 MSKNAQFRAIQPSPLILSFVEKNLLGRRRMIDLKRAGYNIDLSAPLDNIPFSSSSEREKI 336

Query: 67  EENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG 126
           EENIFRNKLEFFAAAKVSSSFP P+LPEIAFAGRSNVGKSS+LNALTRQWGVVRTSDKPG
Sbjct: 337 EENIFRNKLEFFAAAKVSSSFPTPNLPEIAFAGRSNVGKSSLLNALTRQWGVVRTSDKPG 396

Query: 127 LTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW 186
           LTQTINFF+LGTK CLVDLPGYGFAYAKEEVK++WEELVKEYVSTRV LKRVCLLIDTKW
Sbjct: 397 LTQTINFFQLGTKHCLVDLPGYGFAYAKEEVKESWEELVKEYVSTRVGLKRVCLLIDTKW 456

Query: 187 GVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS 246
           G+KPRD ELI LMERS+TKYQ+VLTKTD VFPIDVARRAMQIEE+L  N S+V+PVMMVS
Sbjct: 457 GMKPRDLELIELMERSKTKYQIVLTKTDMVFPIDVARRAMQIEENLFQNKSVVKPVMMVS 516

Query: 247 SKSGAGIRSLRTVLSKIARFAK 268
           S SGAGIRSLRT L+ I RFA+
Sbjct: 517 SNSGAGIRSLRTALANITRFAR 538

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537641|ref|XP_003537334.1| PREDICTED: uncharacterized protein LOC100801850 [Glycine max]

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 228/262 (87%), Positives = 246/262 (93%)

Query: 7   MSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERI 66
           MSKNAQFRAIQPSP ILSFVE NLLGRRR I+L+RAGYNI+LSAPLDNIPFS+SSERE+I
Sbjct: 272 MSKNAQFRAIQPSPLILSFVEKNLLGRRRMIDLKRAGYNIDLSAPLDNIPFSSSSEREKI 331

Query: 67  EENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG 126
           EENIFRNKL+FFAAAKVSSSFP P+LPEIAFAGRSNVGKSS+LNALTRQWGVVRTSDKPG
Sbjct: 332 EENIFRNKLDFFAAAKVSSSFPPPNLPEIAFAGRSNVGKSSLLNALTRQWGVVRTSDKPG 391

Query: 127 LTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW 186
           LTQTINFF LGTK CLVDLPGYGFAYAKEEVK++WEELVKEYVSTRV L+RVCLLIDTKW
Sbjct: 392 LTQTINFFNLGTKHCLVDLPGYGFAYAKEEVKESWEELVKEYVSTRVGLRRVCLLIDTKW 451

Query: 187 GVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS 246
           G+KPRD ELI LMERS+TKYQ+VLTKTD VFPIDVARRAMQIEESL  N S+V+PVMMVS
Sbjct: 452 GMKPRDLELIELMERSKTKYQIVLTKTDVVFPIDVARRAMQIEESLFQNKSVVKPVMMVS 511

Query: 247 SKSGAGIRSLRTVLSKIARFAK 268
           SKSGAGIRSLRT L+ I RFA+
Sbjct: 512 SKSGAGIRSLRTALANITRFAR 533

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42573726|ref|NP_974959.1| putative GTP-binding protein CGPA [Arabidopsis thaliana] gi|222423373|dbj|BAH19659.1| AT5G58370 [Arabidopsis thaliana] gi|332009661|gb|AED97044.1| putative GTP-binding protein CGPA [Arabidopsis thaliana]

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 226/266 (84%), Positives = 248/266 (93%)

Query: 3   KNVEMSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSE 62
           K+VEMSKNAQFRAIQPS SILS+VE+NLLGRRR IEL+RAGYN EL APLDNIP STS+E
Sbjct: 199 KSVEMSKNAQFRAIQPSHSILSYVEENLLGRRRLIELKRAGYNTELPAPLDNIPQSTSTE 258

Query: 63  RERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTS 122
           RERIEE++FRNKLEFFAAA VSSSFP PD+PEIAFAGRSNVGKSS+LNALTRQWGVVRTS
Sbjct: 259 RERIEESVFRNKLEFFAAANVSSSFPPPDVPEIAFAGRSNVGKSSLLNALTRQWGVVRTS 318

Query: 123 DKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI 182
           DKPGLTQTINFF LG K+ LVDLPGYGFA+AK+EVK+AWE+LVKEYVSTR SLKRVCLL+
Sbjct: 319 DKPGLTQTINFFGLGPKVRLVDLPGYGFAFAKDEVKEAWEDLVKEYVSTRTSLKRVCLLV 378

Query: 183 DTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242
           DTKWG+KPRD ELI+LMERS TKYQ+VLTKTD VFPIDVARRAMQIEE LKAN S+VQP+
Sbjct: 379 DTKWGMKPRDQELINLMERSNTKYQIVLTKTDVVFPIDVARRAMQIEEKLKANRSIVQPL 438

Query: 243 MMVSSKSGAGIRSLRTVLSKIARFAK 268
           MMVSS+SGAGI SLRT L+KIARFAK
Sbjct: 439 MMVSSRSGAGIGSLRTALAKIARFAK 464

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297793371|ref|XP_002864570.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297310405|gb|EFH40829.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  469 bits (1206), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 224/266 (84%), Positives = 248/266 (93%)

Query: 3   KNVEMSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSE 62
           K+VEMSKNAQFRAIQPS SILS+VE+NLLGRRR IEL++AGYN EL APLDNIP STS+E
Sbjct: 201 KSVEMSKNAQFRAIQPSHSILSYVEENLLGRRRLIELKKAGYNTELPAPLDNIPQSTSTE 260

Query: 63  RERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTS 122
           RERIEE++FRNKLEFFAAA VSSSFP PD+PEIAFAGRSNVGKSS+LNALTRQWGVVRTS
Sbjct: 261 RERIEESVFRNKLEFFAAANVSSSFPPPDVPEIAFAGRSNVGKSSLLNALTRQWGVVRTS 320

Query: 123 DKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI 182
           DKPGLTQTINFF LG K+ LVDLPGYGFA+AK+EVK+AWE+LVKEYVSTR SLKRVCLL+
Sbjct: 321 DKPGLTQTINFFGLGPKVRLVDLPGYGFAFAKDEVKEAWEDLVKEYVSTRTSLKRVCLLV 380

Query: 183 DTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242
           DTKWG+KPRD ELI+LMERS TKYQ+VLTKTD VFP+DVARRAMQIEE LKAN S+VQP+
Sbjct: 381 DTKWGMKPRDQELINLMERSNTKYQIVLTKTDVVFPMDVARRAMQIEEKLKANRSIVQPL 440

Query: 243 MMVSSKSGAGIRSLRTVLSKIARFAK 268
           MMVSS+SGAGI SLRT L+KIARFAK
Sbjct: 441 MMVSSRSGAGIGSLRTALAKIARFAK 466

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343172533|gb|AEL98970.1| putative GTP-binding protein, partial [Silene latifolia]

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 223/264 (84%), Positives = 245/264 (92%)

Query: 5   VEMSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERE 64
           VEMS NAQF+AI+PS SIL+FV++N LGRRR IELRRAGYN+ELSAPLDN+PFS SSERE
Sbjct: 80  VEMSMNAQFKAIKPSHSILTFVQENFLGRRRDIELRRAGYNVELSAPLDNLPFSASSERE 139

Query: 65  RIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK 124
           R+EE++FRNKLEFFAAA+VSSSFP PDLPEIAFAGRSNVGKSS+LNALTRQWGVVRTSDK
Sbjct: 140 RVEESVFRNKLEFFAAARVSSSFPPPDLPEIAFAGRSNVGKSSLLNALTRQWGVVRTSDK 199

Query: 125 PGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 184
           PG TQ+INFF LG+KL LVDLPGYGFAYAK+EVK+AWEELVKEYVSTRV LKRVCLLIDT
Sbjct: 200 PGHTQSINFFNLGSKLNLVDLPGYGFAYAKDEVKEAWEELVKEYVSTRVGLKRVCLLIDT 259

Query: 185 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM 244
           KWG+KPRD ELI LMERSQTKYQVVLTKTD VFPIDVARRAMQIEE+LK + S+VQPVMM
Sbjct: 260 KWGMKPRDIELIHLMERSQTKYQVVLTKTDVVFPIDVARRAMQIEETLKEHKSIVQPVMM 319

Query: 245 VSSKSGAGIRSLRTVLSKIARFAK 268
           VSSKSGAGIR LRT L K+AR+ K
Sbjct: 320 VSSKSGAGIRCLRTALVKMARYLK 343

Source: Silene latifolia

Species: Silene latifolia

Genus: Silene

Family: Caryophyllaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343172535|gb|AEL98971.1| putative GTP-binding protein, partial [Silene latifolia]

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 222/264 (84%), Positives = 245/264 (92%)

Query: 5   VEMSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERE 64
           VEMS NAQF+AI+PS SIL+FV++N LGRRR IELRRAGYN+ELSAPLDN+PFS SSERE
Sbjct: 80  VEMSMNAQFKAIKPSHSILTFVQENFLGRRRDIELRRAGYNVELSAPLDNLPFSASSERE 139

Query: 65  RIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK 124
           R+EE++FRNKLEFFAAA+VSSSFP PDLPEIAFAGRSNVGKSS+LNALTRQWGVVRTSDK
Sbjct: 140 RVEESVFRNKLEFFAAARVSSSFPPPDLPEIAFAGRSNVGKSSLLNALTRQWGVVRTSDK 199

Query: 125 PGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 184
           PG TQ+INFF LG+KL LVDLPGYGFAYAK+EVK+AWEELVKEY+STRV LKRVCLLIDT
Sbjct: 200 PGHTQSINFFNLGSKLNLVDLPGYGFAYAKDEVKEAWEELVKEYLSTRVGLKRVCLLIDT 259

Query: 185 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM 244
           KWG+KPRD ELI LMERSQTKYQVVLTKTD VFPIDVARRAMQIEE+LK + S+VQPVMM
Sbjct: 260 KWGMKPRDIELIHLMERSQTKYQVVLTKTDVVFPIDVARRAMQIEETLKEHKSIVQPVMM 319

Query: 245 VSSKSGAGIRSLRTVLSKIARFAK 268
           VSSKSGAGIR LRT L K+AR+ K
Sbjct: 320 VSSKSGAGIRCLRTALVKMARYLK 343

Source: Silene latifolia

Species: Silene latifolia

Genus: Silene

Family: Caryophyllaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439155|ref|XP_004137353.1| PREDICTED: uncharacterized protein LOC101223165 [Cucumis sativus]

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 227/264 (85%), Positives = 246/264 (93%)

Query: 6   EMSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERER 65
           +MSKNA+FRAIQPS SI+SFVE+NLLGRRR IE+ RAGYN +L++PLDNIPFS S ERER
Sbjct: 272 KMSKNAEFRAIQPSKSIISFVEENLLGRRRMIEIERAGYNTDLTSPLDNIPFSKSEERER 331

Query: 66  IEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP 125
           IEENIFRNKL FFAAAKVSSSFP PD+PEIAFAGRSNVGKSS+LNALTRQWGVVRTSDKP
Sbjct: 332 IEENIFRNKLTFFAAAKVSSSFPPPDVPEIAFAGRSNVGKSSLLNALTRQWGVVRTSDKP 391

Query: 126 GLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK 185
           GLTQTINFF LG+KL LVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV L+RVCLL+DTK
Sbjct: 392 GLTQTINFFNLGSKLSLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVGLRRVCLLVDTK 451

Query: 186 WGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV 245
           WG+KPRD ELI LMERSQTKYQVVLTKTDTVFP+DVARRAMQIEE L  N S+VQP+MMV
Sbjct: 452 WGMKPRDQELIDLMERSQTKYQVVLTKTDTVFPMDVARRAMQIEERLTRNKSIVQPLMMV 511

Query: 246 SSKSGAGIRSLRTVLSKIARFAKV 269
           SSKSGAGIRSLR+VL+ IARFAKV
Sbjct: 512 SSKSGAGIRSLRSVLATIARFAKV 535

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449516736|ref|XP_004165402.1| PREDICTED: probable GTP-binding protein EngB-like [Cucumis sativus]

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 224/264 (84%), Positives = 244/264 (92%)

Query: 6   EMSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERER 65
           +MSKNA+FRAIQPS SI+SFVE+NLLGRRR IE+ RAGYN +L++PLDNIPFS S ERER
Sbjct: 110 KMSKNAEFRAIQPSKSIISFVEENLLGRRRMIEIERAGYNTDLTSPLDNIPFSKSEERER 169

Query: 66  IEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP 125
           IEENIFRNKL FFAAAKVSSSFP PD+PEIAFAGRSNVGKSS+LNALTRQWGVVRTSDKP
Sbjct: 170 IEENIFRNKLTFFAAAKVSSSFPPPDVPEIAFAGRSNVGKSSLLNALTRQWGVVRTSDKP 229

Query: 126 GLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK 185
           GLTQ + FF LG+KL LVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV L+RVCLL+DTK
Sbjct: 230 GLTQVLKFFNLGSKLSLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVGLRRVCLLVDTK 289

Query: 186 WGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV 245
           WG+KPRD ELI LMERSQTKYQVVLTKTDTVFP+DVARRAMQIEE L  N S+VQP+MMV
Sbjct: 290 WGMKPRDQELIDLMERSQTKYQVVLTKTDTVFPMDVARRAMQIEERLTRNKSIVQPLMMV 349

Query: 246 SSKSGAGIRSLRTVLSKIARFAKV 269
           SSKSGAGIRSLR+VL+ IARFAKV
Sbjct: 350 SSKSGAGIRSLRSVLATIARFAKV 373

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
TAIR|locus:2161243	465	AT5G58370 [Arabidopsis thalian	0.988	0.572	0.800	1.1e-108
DICTYBASE|DDB_G0348940	743	DDB_G0348940 [Dictyostelium di	0.691	0.250	0.430	1.4e-36
UNIPROTKB|Q5LW13	217	engB "Probable GTP-binding pro	0.698	0.866	0.420	1.5e-35
TIGR_CMR|SPO_0530	217	SPO_0530 "GTP-binding protein"	0.698	0.866	0.420	1.5e-35
UNIPROTKB|Q2GKS7	193	engB "Probable GTP-binding pro	0.691	0.963	0.397	2.9e-32
TIGR_CMR|APH_0421	193	APH_0421 "putative GTP-binding	0.691	0.963	0.397	2.9e-32
GENEDB_PFALCIPARUM|PF14_0400	1000	PF14_0400 "hypothetical protei	0.702	0.189	0.371	2.3e-29
UNIPROTKB|Q8IL49	1000	PF14_0400 "GTP binding protein	0.702	0.189	0.371	2.3e-29
DICTYBASE|DDB_G0268824	432	DDB_G0268824 [Dictyostelium di	0.665	0.414	0.344	9.4e-27
UNIPROTKB|Q748I9	206	engB "Probable GTP-binding pro	0.583	0.762	0.414	1.4e-25

TAIR|locus:2161243 AT5G58370 [Arabidopsis thaliana (taxid:3702)]

 Score = 1074 (383.1 bits), Expect = 1.1e-108, P = 1.1e-108
 Identities = 213/266 (80%), Positives = 232/266 (87%)

Query:     3 KNVEMSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPXXXXXX 62
             K+VEMSKNAQFRAIQPS SILS+VE+NLLGRRR IEL+RAGYN EL APLDNIP      
Sbjct:   199 KSVEMSKNAQFRAIQPSHSILSYVEENLLGRRRLIELKRAGYNTELPAPLDNIPQSTSTE 258

Query:    63 XXXXXXXXXXXKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTS 122
                        KLEFFAAA VSSSFP PD+PEIAFAGRSNVGKSS+LNALTRQWGVVRTS
Sbjct:   259 RERIEESVFRNKLEFFAAANVSSSFPPPDVPEIAFAGRSNVGKSSLLNALTRQWGVVRTS 318

Query:   123 DKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI 182
             DKPGLTQTINFF LG K+ LVDLPGYGFA+AK+EVK+AWE+LVKEYVSTR SLKRVCLL+
Sbjct:   319 DKPGLTQTINFFGLGPKVRLVDLPGYGFAFAKDEVKEAWEDLVKEYVSTRTSLKRVCLLV 378

Query:   183 DTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242
             DTKWG+KPRD ELI+LMERS TKYQ+VLTKTD VFPIDVARRAMQIEE LKAN S+VQP+
Sbjct:   379 DTKWGMKPRDQELINLMERSNTKYQIVLTKTDVVFPIDVARRAMQIEEKLKANRSIVQPL 438

Query:   243 MMVSSKSGAGIRSLRTVLSKIARFAK 268
             MMVSS+SGAGI SLRT L+KIARFAK
Sbjct:   439 MMVSSRSGAGIGSLRTALAKIARFAK 464

GO:0000917 "barrier septum assembly" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

DICTYBASE|DDB_G0348940 DDB_G0348940 [Dictyostelium discoideum (taxid:44689)]

 Score = 401 (146.2 bits), Expect = 1.4e-36, P = 1.4e-36
 Identities = 81/188 (43%), Positives = 124/188 (65%)

Query:    74 KLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF 133
             K++F  AAK   SF    LPE+AF GRSNVGKSS++NALT++ G+ +TSDKPG TQ+IN+
Sbjct:   257 KMKFIGAAKNIDSFLPETLPEVAFIGRSNVGKSSLINALTQR-GLAKTSDKPGQTQSINW 315

Query:   134 FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH 193
             F+LG+ L LVDLPGYGFA+AKE + + W ++   Y++ R  +  V +LID++ G+K  D 
Sbjct:   316 FELGSTLYLVDLPGYGFAFAKETLVEQWSDITIHYLTERKCISCVFILIDSRHGLKDSDR 375

Query:   194 ELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSL-VQPVMMVSSKSGAG 252
              L+  +++ + K  ++LTK D   P D+ +R     + ++ N      PV+ +SSK+ +G
Sbjct:   376 NLLLELDKKKIKTHIILTKADLTKPEDLVKRISITNQEIQTNYRYSTTPVLPISSKNLSG 435

Query:   253 IRSLRTVL 260
             I  L  ++
Sbjct:   436 ISDLSKLI 443

GO:0005525 "GTP binding" evidence=IEA

GO:0000917 "barrier septum assembly" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q5LW13 engB "Probable GTP-binding protein EngB" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
 Identities = 79/188 (42%), Positives = 118/188 (62%)

Query:    76 EFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK 135
             EF       S  P  D  E+ FAGRSNVGKSS++NALT   G+ R S+ PG TQ INFF 
Sbjct:    29 EFVKGVVAMSGLPPADRVEVCFAGRSNVGKSSLINALTGTKGLARASNTPGRTQEINFFT 88

Query:   136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHEL 195
              G +L LVDLPGYG+A A  +V + W++L+K+Y+S R +L+R  +LID + GVK  D E+
Sbjct:    89 QGPELYLVDLPGYGYANAPLKVVEKWQKLLKQYLSGRQTLRRAFVLIDARHGVKAVDDEI 148

Query:   196 ISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRS 255
             + L++ S   +Q VLTK D V   +  +   Q+  +L  + +    +++ SS+ G GI +
Sbjct:   149 MKLLDTSAVTFQCVLTKADKVKAAERDKVLAQVRAALAKHPAAYPEIVLTSSEKGDGIAT 208

Query:   256 LRTVLSKI 263
             LR++++ +
Sbjct:   209 LRSIIAHL 216

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_0530 SPO_0530 "GTP-binding protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
 Identities = 79/188 (42%), Positives = 118/188 (62%)

Query:    76 EFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK 135
             EF       S  P  D  E+ FAGRSNVGKSS++NALT   G+ R S+ PG TQ INFF 
Sbjct:    29 EFVKGVVAMSGLPPADRVEVCFAGRSNVGKSSLINALTGTKGLARASNTPGRTQEINFFT 88

Query:   136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHEL 195
              G +L LVDLPGYG+A A  +V + W++L+K+Y+S R +L+R  +LID + GVK  D E+
Sbjct:    89 QGPELYLVDLPGYGYANAPLKVVEKWQKLLKQYLSGRQTLRRAFVLIDARHGVKAVDDEI 148

Query:   196 ISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRS 255
             + L++ S   +Q VLTK D V   +  +   Q+  +L  + +    +++ SS+ G GI +
Sbjct:   149 MKLLDTSAVTFQCVLTKADKVKAAERDKVLAQVRAALAKHPAAYPEIVLTSSEKGDGIAT 208

Query:   256 LRTVLSKI 263
             LR++++ +
Sbjct:   209 LRSIIAHL 216

GO:0005525 "GTP binding" evidence=ISS

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q2GKS7 engB "Probable GTP-binding protein EngB" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 74/186 (39%), Positives = 113/186 (60%)

Query:    77 FFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL 136
             F A  +   SFP   +PE+AFAGRSNVGKSS++NA+T      +TS  PG T+ INF+  
Sbjct:     6 FVAGVQDRKSFPDFGVPEVAFAGRSNVGKSSLINAITNNKKNAKTSSNPGSTRQINFYLN 65

Query:   137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELI 196
                + LVDLPGYG++ A +E    + ++++ Y+ +R +L+R+ LLID++ G+K  D + +
Sbjct:    66 KGIVALVDLPGYGYSKASKEATRGYLDVMEHYLMSREALQRLVLLIDSRIGLKEIDRDFL 125

Query:   197 SLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL 256
               +E     Y +VLTK D +    +      ++   +  N L+QP+M VSSKSG GIR L
Sbjct:   126 CWLEEHGIYYSIVLTKADKLSEQALGSMVSFVQNQAQGGNFLLQPIMWVSSKSGRGIREL 185

Query:   257 RTVLSK 262
                +S+
Sbjct:   186 AHEISR 191

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|APH_0421 APH_0421 "putative GTP-binding protein EngB" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 74/186 (39%), Positives = 113/186 (60%)

Query:    77 FFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL 136
             F A  +   SFP   +PE+AFAGRSNVGKSS++NA+T      +TS  PG T+ INF+  
Sbjct:     6 FVAGVQDRKSFPDFGVPEVAFAGRSNVGKSSLINAITNNKKNAKTSSNPGSTRQINFYLN 65

Query:   137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELI 196
                + LVDLPGYG++ A +E    + ++++ Y+ +R +L+R+ LLID++ G+K  D + +
Sbjct:    66 KGIVALVDLPGYGYSKASKEATRGYLDVMEHYLMSREALQRLVLLIDSRIGLKEIDRDFL 125

Query:   197 SLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL 256
               +E     Y +VLTK D +    +      ++   +  N L+QP+M VSSKSG GIR L
Sbjct:   126 CWLEEHGIYYSIVLTKADKLSEQALGSMVSFVQNQAQGGNFLLQPIMWVSSKSGRGIREL 185

Query:   257 RTVLSK 262
                +S+
Sbjct:   186 AHEISR 191

GO:0005525 "GTP binding" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GENEDB_PFALCIPARUM|PF14_0400 PF14_0400 "hypothetical protein, conserved" [Plasmodium falciparum (taxid:5833)]

 Score = 337 (123.7 bits), Expect = 2.3e-29, P = 2.3e-29
 Identities = 71/191 (37%), Positives = 111/191 (58%)

Query:    74 KLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF 133
             ++  +  A   +  P P  PEIAF GRSN GKS+++N L  +    + S  PG T+ I+F
Sbjct:    95 RMVLYKTAIQVNELPLPKYPEIAFIGRSNCGKSTLINELCGRTNKAKVSKIPGCTKEIHF 154

Query:   134 FKLGTK--LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPR 191
             +K+G    +CLVDLPGYG+A  KEE++  W E    Y+  R +LK+V +LID + G+K  
Sbjct:   155 YKIGKPCLMCLVDLPGYGYAECKEELRLQWNEFTLFYLKNRKNLKKVFVLIDCRVGLKTS 214

Query:   192 DHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGA 251
             D EL+   +R   KYQ+VL+K D +   D+A +   I + +    +L +P++ +SS    
Sbjct:   215 DKELLHFFDRYNIKYQIVLSKCDLLNTKDLAIKIQIINQDILPFKNLEKPLIPLSSIKNQ 274

Query:   252 GIRSLRTVLSK 262
              +  LR  ++K
Sbjct:   275 NLSELRNEIAK 285

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8IL49 PF14_0400 "GTP binding protein, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 337 (123.7 bits), Expect = 2.3e-29, P = 2.3e-29
 Identities = 71/191 (37%), Positives = 111/191 (58%)

Query:    74 KLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF 133
             ++  +  A   +  P P  PEIAF GRSN GKS+++N L  +    + S  PG T+ I+F
Sbjct:    95 RMVLYKTAIQVNELPLPKYPEIAFIGRSNCGKSTLINELCGRTNKAKVSKIPGCTKEIHF 154

Query:   134 FKLGTK--LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPR 191
             +K+G    +CLVDLPGYG+A  KEE++  W E    Y+  R +LK+V +LID + G+K  
Sbjct:   155 YKIGKPCLMCLVDLPGYGYAECKEELRLQWNEFTLFYLKNRKNLKKVFVLIDCRVGLKTS 214

Query:   192 DHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGA 251
             D EL+   +R   KYQ+VL+K D +   D+A +   I + +    +L +P++ +SS    
Sbjct:   215 DKELLHFFDRYNIKYQIVLSKCDLLNTKDLAIKIQIINQDILPFKNLEKPLIPLSSIKNQ 274

Query:   252 GIRSLRTVLSK 262
              +  LR  ++K
Sbjct:   275 NLSELRNEIAK 285

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0268824 DDB_G0268824 [Dictyostelium discoideum (taxid:44689)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 62/180 (34%), Positives = 103/180 (57%)

Query:    84 SSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLV 143
             S  FP    P++AF G+SNVGKS++LN++ R+  +   S   G T+TINF+++  KL LV
Sbjct:   223 SVDFPKKHFPQVAFLGKSNVGKSTLLNSVLRR-DLAYVSKSAGCTKTINFYQIWEKLYLV 281

Query:   144 DLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ 203
             DLPGYGFA   ++    W   + E++ T  +L +V LLID++  +   D E +SL+++ +
Sbjct:   282 DLPGYGFAKVSKKKSTVWGNAISEFLLTSPNLFKVFLLIDSRNKIHKNDIEAMSLLDQHK 341

Query:   204 TKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 263
               +Q+VLTK D   P  +      ++E ++     +  ++  SS    GI  +RT +  +
Sbjct:   342 VSFQIVLTKIDKTTPSMLRSLYGSLKEEIQKTTCCLPTIIQTSSVDSKGIDDIRTTILNV 401

GO:0005525 "GTP binding" evidence=IEA

GO:0000917 "barrier septum assembly" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q748I9 engB "Probable GTP-binding protein EngB" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 65/157 (41%), Positives = 88/157 (56%)

Query:    76 EFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK 135
             EF  +      +P  DL EIAF GRSNVGKSS++N L  +  +VRTS  PG TQ INFF+
Sbjct:     8 EFVTSGTRPEHYPPGDLLEIAFVGRSNVGKSSLINVLVNRKSLVRTSSTPGRTQLINFFR 67

Query:   136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHEL 195
             +   L LVDLPGYGFA    EVK  W  +V+ Y++ R  L  V L++D +      D  +
Sbjct:    68 VNGSLMLVDLPGYGFARVPPEVKRQWGPMVETYLAGRSCLACVVLIVDVRRTPAEEDRLM 127

Query:   196 ISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESL 232
             +  +        VV+TK D V   + A++A  I  +L
Sbjct:   128 LQWLRAYDIPVLVVITKCDKVSKNERAKQASLISRTL 164

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	269
PRK00454	196	PRK00454, engB, GTP-binding protein YsxC; Reviewed	3e-65
cd01876	170	cd01876, YihA_EngB, YihA (EngB) GTPase family	3e-64
TIGR03598	178	TIGR03598, GTPase_YsxC, ribosome biogenesis GTP-bi	7e-59
COG0218	200	COG0218, COG0218, Predicted GTPase [General functi	1e-58
pfam01926	117	pfam01926, MMR_HSR1, 50S ribosome-binding GTPase	3e-21
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	2e-15
PRK04213	201	PRK04213, PRK04213, GTP-binding protein; Provision	3e-15
cd00880	161	cd00880, Era_like, E	4e-14
TIGR03918	391	TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster	9e-12
cd04163	168	cd04163, Era, E	2e-11
cd04171	170	cd04171, SelB, SelB, the dedicated elongation fact	6e-11
cd11383	140	cd11383, YfjP, YfjP GTPase	4e-09
cd00881	183	cd00881, GTP_translation_factor, GTP translation f	2e-08
cd01856	171	cd01856, YlqF, Circularly permuted YlqF GTPase	4e-08
COG1161	322	COG1161, COG1161, Predicted GTPases [General funct	4e-08
PRK00089	292	PRK00089, era, GTPase Era; Reviewed	5e-08
COG1160	444	COG1160, COG1160, Predicted GTPases [General funct	1e-07
cd01895	174	cd01895, EngA2, EngA2 GTPase contains the second d	1e-07
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	2e-07
cd01857	140	cd01857, HSR1_MMR1, A circularly permuted subfamil	2e-07
cd01894	157	cd01894, EngA1, EngA1 GTPase contains the first do	2e-07
COG0486	454	COG0486, ThdF, Predicted GTPase [General function	2e-07
PRK00093	435	PRK00093, PRK00093, GTP-binding protein Der; Revie	7e-07
TIGR03594	429	TIGR03594, GTPase_EngA, ribosome-associated GTPase	9e-07
PRK05291	449	PRK05291, trmE, tRNA modification GTPase TrmE; Rev	1e-06
COG1159	298	COG1159, Era, GTPase [General function prediction	2e-06
TIGR03594	429	TIGR03594, GTPase_EngA, ribosome-associated GTPase	3e-06
cd01855	191	cd01855, YqeH, Circularly permuted YqeH GTPase	3e-06
pfam02421	190	pfam02421, FeoB_N, Ferrous iron transport protein	9e-06
cd01859	157	cd01859, MJ1464, An uncharacterized, circularly pe	1e-05
cd04164	159	cd04164, trmE, trmE is a tRNA modification GTPase	1e-05
TIGR03597	360	TIGR03597, GTPase_YqeH, ribosome biogenesis GTPase	2e-05
COG0370	653	COG0370, FeoB, Fe2+ transport system protein B [In	2e-05
TIGR00450	442	TIGR00450, mnmE_trmE_thdF, tRNA modification GTPas	2e-05
TIGR00475	581	TIGR00475, selB, selenocysteine-specific elongatio	2e-05
PRK00093	435	PRK00093, PRK00093, GTP-binding protein Der; Revie	4e-05
COG3276	447	COG3276, SelB, Selenocysteine-specific translation	4e-05
TIGR03596	276	TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-bi	1e-04
cd09912	180	cd09912, DLP_2, Dynamin-like protein including dyn	1e-04
cd01879	159	cd01879, FeoB, Ferrous iron transport protein B (F	1e-04
cd04178	171	cd04178, Nucleostemin_like, A circularly permuted	3e-04
cd01881	167	cd01881, Obg_like, Obg-like family of GTPases cons	6e-04
cd01849	146	cd01849, YlqF_related_GTPase, Circularly permuted	6e-04
COG1160	444	COG1160, COG1160, Predicted GTPases [General funct	9e-04
PRK09518	712	PRK09518, PRK09518, bifunctional cytidylate kinase	0.001
PRK09563	287	PRK09563, rbgA, GTPase YlqF; Reviewed	0.001
pfam03193	161	pfam03193, DUF258, Protein of unknown function, DU	0.001
cd01858	157	cd01858, NGP_1, A novel nucleolar GTP-binding prot	0.002
pfam00009	184	pfam00009, GTP_EFTU, Elongation factor Tu GTP bind	0.002
COG1162	301	COG1162, COG1162, Predicted GTPases [General funct	0.004

>gnl|CDD|234770 PRK00454, engB, GTP-binding protein YsxC; Reviewed

 Score =  201 bits (514), Expect = 3e-65
 Identities = 80/196 (40%), Positives = 119/196 (60%), Gaps = 3/196 (1%)

Query: 69  NIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT 128
            +F +  EF  +A      P  D PEIAFAGRSNVGKSS++NALT +  + RTS  PG T
Sbjct: 1   KLFIHNAEFVTSAPKLEQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRT 60

Query: 129 QTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV 188
           Q INFF++  KL LVDLPGYG+A   +E K+ W++L++EY+ TR +LK V LLID++  +
Sbjct: 61  QLINFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPL 120

Query: 189 KPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSK 248
           K  D ++I  ++       +VLTK D +   +  ++  ++ ++LK  +     V++ SS 
Sbjct: 121 KELDLQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDD---EVILFSSL 177

Query: 249 SGAGIRSLRTVLSKIA 264
              GI  LR  ++K  
Sbjct: 178 KKQGIDELRAAIAKWL 193

Length = 196

>gnl|CDD|206665 cd01876, YihA_EngB, YihA (EngB) GTPase family

 Score =  198 bits (506), Expect = 3e-64
 Identities = 79/171 (46%), Positives = 112/171 (65%), Gaps = 1/171 (0%)

Query: 94  EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYA 153
           E+AFAGRSNVGKSS++NALT +  + RTS  PG TQ INFF +G K  LVDLPGYG+A  
Sbjct: 1   EVAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFNVGDKFRLVDLPGYGYAKV 60

Query: 154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKT 213
            +EV++ W +L++EY+  R +LK V LLID + G  P D E++  +E     + +VLTK 
Sbjct: 61  SKEVREKWGKLIEEYLENRENLKGVVLLIDARHGPTPIDLEMLEFLEELGIPFLIVLTKA 120

Query: 214 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 264
           D +   ++A+   +I+E L   N L  PV++ SSK G GI  LR ++++  
Sbjct: 121 DKLKKSELAKVLKKIKEELNLFNIL-PPVILFSSKKGTGIDELRALIAEWL 170

The YihA (EngB) subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. Length = 170

>gnl|CDD|213835 TIGR03598, GTPase_YsxC, ribosome biogenesis GTP-binding protein YsxC/EngB

 Score =  184 bits (471), Expect = 7e-59
 Identities = 74/178 (41%), Positives = 107/178 (60%), Gaps = 2/178 (1%)

Query: 76  EFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK 135
           EF  +A      P  D PEIAFAGRSNVGKSS++NALT +  + RTS  PG TQ INFF+
Sbjct: 2   EFVKSAVKLKQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFE 61

Query: 136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHEL 195
           +     LVDLPGYG+A   +E K+ W++L++EY+  R +LK V LL+D +  +K  D E+
Sbjct: 62  VNDGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEM 121

Query: 196 ISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGI 253
           I  +        +VLTK D +   ++ ++  +I+++LK +      V + SS    GI
Sbjct: 122 IEWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADD--SVQLFSSLKKTGI 177

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes [Protein synthesis, Other]. Length = 178

>gnl|CDD|223296 COG0218, COG0218, Predicted GTPase [General function prediction only]

 Score =  185 bits (471), Expect = 1e-58
 Identities = 82/192 (42%), Positives = 115/192 (59%)

Query: 69  NIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT 128
            +  +K +F  +A     +P  DLPEIAFAGRSNVGKSS++NALT Q  + RTS  PG T
Sbjct: 1   KLNYHKAKFITSAPDIKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRT 60

Query: 129 QTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV 188
           Q INFF++  +L LVDLPGYG+A   +EVK+ W++L++EY+  R +LK V LLID +   
Sbjct: 61  QLINFFEVDDELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPP 120

Query: 189 KPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSK 248
           K  D E+I  +        VVLTK D +   +  ++  ++ E LK      Q V++ SS 
Sbjct: 121 KDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWVVLFSSL 180

Query: 249 SGAGIRSLRTVL 260
              GI  L+  +
Sbjct: 181 KKKGIDELKAKI 192

Length = 200

>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase

 Score = 85.8 bits (213), Expect = 3e-21
 Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 8/122 (6%)

Query: 94  EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ--TINFFKLGTKLCLVDLPGYGFA 151
            +A  GR NVGKS+++NALT    V   SD PG T+   +    LG ++ LVD PG    
Sbjct: 1   RVALVGRPNVGKSTLINALTGA-KVAIVSDYPGTTRDPILGVLGLGRQIILVDTPGLI-- 57

Query: 152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS-LMERSQTKYQVVL 210
             +   +    E    ++        + L++D   G+   D E++  L +  +    +VL
Sbjct: 58  --EGASEGKGVEGFNRFLEAIREADLILLVVDASEGLTEDDEEILEELEKLPKKPIILVL 115

Query: 211 TK 212
            K
Sbjct: 116 NK 117

The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 71.3 bits (175), Expect = 2e-15
 Identities = 43/169 (25%), Positives = 67/169 (39%), Gaps = 20/169 (11%)

Query: 96  AFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGT-----KLCLVDLPGYGF 150
              GR  VGKSS+LNAL     V   SD PG T+  + +         KL LVD PG   
Sbjct: 1   VVVGRGGVGKSSLLNALLGGE-VGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGL-- 57

Query: 151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID-TKWGVKPR-DHELISLMERSQTKYQV 208
               +E      E +   +     L  + L++D T    +      ++  + +      +
Sbjct: 58  ----DEFGGLGREELARLLLRGADL--ILLVVDSTDRESEEDAKLLILRRLRKEGIPIIL 111

Query: 209 VLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLR 257
           V  K D +   +V     ++    +    L  PV  VS+K+G G+  L 
Sbjct: 112 VGNKIDLLEEREVE----ELLRLEELAKILGVPVFEVSAKTGEGVDELF 156

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|179790 PRK04213, PRK04213, GTP-binding protein; Provisional

 Score = 71.9 bits (177), Expect = 3e-15
 Identities = 31/78 (39%), Positives = 49/78 (62%), Gaps = 4/78 (5%)

Query: 93  PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGF-A 151
           PEI F GRSNVGKS+++  LT +   VR   +PG+T+  N +  G  + L DLPG+GF +
Sbjct: 10  PEIVFVGRSNVGKSTLVRELTGKK--VRVGKRPGVTRKPNHYDWGDFI-LTDLPGFGFMS 66

Query: 152 YAKEEVKDAWEELVKEYV 169
              +EV++  ++ +  Y+
Sbjct: 67  GVPKEVQEKIKDEIVRYI 84

Length = 201

>gnl|CDD|206646 cd00880, Era_like, E

 Score = 67.7 bits (166), Expect = 4e-14
 Identities = 49/176 (27%), Positives = 74/176 (42%), Gaps = 22/176 (12%)

Query: 96  AFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN----FFKLGTKLCLVDLPGY--G 149
           A  GR NVGKSS+LNAL  Q  V   S  PG T+              + L+D PG    
Sbjct: 1   AIFGRPNVGKSSLLNALLGQN-VGIVSPIPGTTRDPVRKEWELLPLGPVVLIDTPGLDEE 59

Query: 150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHEL-ISLMERSQTKYQV 208
               +E V++A +         R  L  V L++D+   + P + E  + L+        +
Sbjct: 60  GGLGRERVEEARQVA------DRADL--VLLVVDS--DLTPVEEEAKLGLLRERGKPVLL 109

Query: 209 VLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 264
           VL K D V   +      + +  L        PV+ VS+  G GI  LR  ++++ 
Sbjct: 110 VLNKIDLVPESEEEELLRERKLEL----LPDLPVIAVSALPGEGIDELRKKIAELL 161

coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161

>gnl|CDD|234395 TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster maturation GTPase HydF

 Score = 64.1 bits (157), Expect = 9e-12
 Identities = 49/180 (27%), Positives = 74/180 (41%), Gaps = 32/180 (17%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-----QTINFFKLGTKLCLVDLPGYG 149
           I   GR N GKSS++NALT Q  +   SD PG T     + +    LG  + L+D  G  
Sbjct: 9   IGIFGRRNAGKSSLINALTGQ-DIAIVSDVPGTTTDPVYKAMELLPLGPVV-LIDTAG-- 64

Query: 150 FAYAKEEVKDAWE--ELVKEYVSTRVSLKR---VCLLIDTKWGVKPRDHELISLMERSQT 204
                  + D  E  EL  E   TR  L +     L++D   G    + ELI  ++  + 
Sbjct: 65  -------LDDEGELGELRVE--KTREVLDKTDLALLVVDAGVGPGEYELELIEELKERKI 115

Query: 205 KYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 264
            Y VV+ K D         +  +             P + VS+ +G GI  L+  + ++ 
Sbjct: 116 PYIVVINKIDLGEESAELEKLEKKFG---------LPPIFVSALTGEGIDELKEAIIELL 166

This model describes the family of the [Fe] hydrogenase maturation protein HypF as characterized in Chlamydomonas reinhardtii and found, in an operon with radical SAM proteins HydE and HydG, in numerous bacteria. It has GTPase activity, can bind an 4Fe-4S cluster, and is essential for hydrogenase activity [Protein fate, Protein modification and repair]. Length = 391

>gnl|CDD|206726 cd04163, Era, E

 Score = 60.9 bits (149), Expect = 2e-11
 Identities = 43/179 (24%), Positives = 75/179 (41%), Gaps = 25/179 (13%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG------TKLCLVDLPGY 148
           +A  GR NVGKS++LNAL  Q  +   S KP  T+       G       ++  VD PG 
Sbjct: 6   VAIIGRPNVGKSTLLNALVGQ-KISIVSPKPQTTRNRI---RGIYTDDDAQIIFVDTPGI 61

Query: 149 GFAYAKEEVKDAWEELVKEYVSTRVSLKR---VCLLIDTKWGVKPRDHELISLMERSQTK 205
              +  ++     E +VK   S   +LK    V  ++D    +   D  ++ L+++S+T 
Sbjct: 62  ---HKPKKKLG--ERMVKAAWS---ALKDVDLVLFVVDASEWIGEGDEFILELLKKSKTP 113

Query: 206 YQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 264
             +VL K D V   +     ++  + L         +  +S+  G  +  L   + +  
Sbjct: 114 VILVLNKIDLVKDKEDLLPLLEKLKELHPF----AEIFPISALKGENVDELLEYIVEYL 168

coli Ras-like protein (Era) is a multifunctional GTPase. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. Length = 168

>gnl|CDD|206734 cd04171, SelB, SelB, the dedicated elongation factor for delivery of selenocysteinyl-tRNA to the ribosome

 Score = 59.2 bits (144), Expect = 6e-11
 Identities = 48/178 (26%), Positives = 79/178 (44%), Gaps = 23/178 (12%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-GLTQTINF----FKLGTKLCLVDLPGYG 149
           I  AG  + GK++++ ALT         +K  G+T  + F       G +L  +D+PG+ 
Sbjct: 2   IGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPDGKRLGFIDVPGH- 60

Query: 150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKP--RDH-ELISLMERSQTKY 206
                       E+ VK  ++    +  V L++    G+ P  R+H E++ L+   +   
Sbjct: 61  ------------EKFVKNMLAGAGGIDAVLLVVAADEGIMPQTREHLEILELLGIKKG-- 106

Query: 207 QVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 264
            VVLTK D V    +     +I E L        P+  VSS +G GI  L+  L ++A
Sbjct: 107 LVVLTKADLVDEDRLELVEEEILELLAGTFLADAPIFPVSSVTGEGIEELKNYLDELA 164

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryotes, they do share a common feature. Unlike in E. coli, these SECIS elements are located in the 3' UTRs. This group contains bacterial SelBs, as well as, one from archaea. Length = 170

>gnl|CDD|206743 cd11383, YfjP, YfjP GTPase

 Score = 53.5 bits (129), Expect = 4e-09
 Identities = 36/140 (25%), Positives = 53/140 (37%), Gaps = 14/140 (10%)

Query: 96  AFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTK---LCLVDLPGYGFAY 152
              G++  GKSS+ NAL     V    D+   T+    +   T    L L+DLPG G   
Sbjct: 1   GLMGKTGAGKSSLCNALFGT-EVAAVGDRRPTTRAAQAYVWQTGGDGLVLLDLPGVGERG 59

Query: 153 AKEEVKDAW-EELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISL-MERSQTKYQVVL 210
                +D   EEL +  +        V  L+D        DH+   L +         VL
Sbjct: 60  ----RRDREYEELYRRLLPE---ADLVLWLLDADDRALAADHDFYLLPLAGHDAPLLFVL 112

Query: 211 TKTDTVFPIDVARRAMQIEE 230
            + D V  +  AR    ++E
Sbjct: 113 NQVDPVLAV-SARTGWGLDE 131

The Era (E. coli Ras-like protein)-like YfjP subfamily includes several uncharacterized bacterial GTPases that are similar to Era. They generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. Length = 140

>gnl|CDD|206647 cd00881, GTP_translation_factor, GTP translation factor family primarily contains translation initiation, elongation and release factors

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 37/188 (19%), Positives = 66/188 (35%), Gaps = 35/188 (18%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVV--------RTSD------KPGLTQTINFFKLGTKL 140
           +   G  + GK+++  +L  Q G +           D      + G+T      +     
Sbjct: 2   VGVIGHVDHGKTTLTGSLLYQTGAIDRRGTRKETFLDTLKEERERGITIKTGVVEFEWPK 61

Query: 141 C---LVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS 197
                +D PG+             E+  KE V          L++D   GV+P+  E ++
Sbjct: 62  RRINFIDTPGH-------------EDFSKETVRGLAQADGALLVVDANEGVEPQTREHLN 108

Query: 198 LMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ-----PVMMVSSKSGAG 252
           +         V + K D V   D      +I+E LK            P++ +S+ +G G
Sbjct: 109 IALAGGLPIIVAVNKIDRVGEEDFDEVLREIKELLKLIGFTFLKGKDVPIIPISALTGEG 168

Query: 253 IRSLRTVL 260
           I  L   +
Sbjct: 169 IEELLDAI 176

The GTP translation factor family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. Length = 183

>gnl|CDD|206749 cd01856, YlqF, Circularly permuted YlqF GTPase

 Score = 51.4 bits (124), Expect = 4e-08
 Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 102 NVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 147
           NVGKS+++N L  +  V +  +KPG+T+   + ++G  + L+D PG
Sbjct: 125 NVGKSTLINRLRGK-KVAKVGNKPGVTRGQQWIRIGPNIELLDTPG 169

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in all eukaryotes as well as a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga). Length = 171

>gnl|CDD|224083 COG1161, COG1161, Predicted GTPases [General function prediction only]

 Score = 53.2 bits (128), Expect = 4e-08
 Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 99  GRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGF 150
           G  NVGKS+++N L  +  V +TS++PG T+ I + KL   + L+D PG   
Sbjct: 139 GYPNVGKSTLINRLLGK-KVAKTSNRPGTTKGIQWIKLDDGIYLLDTPGIIP 189

Length = 322

>gnl|CDD|234624 PRK00089, era, GTPase Era; Reviewed

 Score = 52.4 bits (127), Expect = 5e-08
 Identities = 41/190 (21%), Positives = 72/190 (37%), Gaps = 51/190 (26%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-------------GLTQTINFFKLGTKLC 141
           +A  GR NVGKS++LNAL  Q  +   S KP                Q I          
Sbjct: 8   VAIVGRPNVGKSTLLNALVGQ-KISIVSPKPQTTRHRIRGIVTEDDAQII---------- 56

Query: 142 LVDLPGYGFA-------YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHE 194
            VD PG              +    + ++         V L  V  ++D    + P D  
Sbjct: 57  FVDTPGI-HKPKRALNRAMNKAAWSSLKD---------VDL--VLFVVDADEKIGPGDEF 104

Query: 195 LISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP--VMMVSSKSGAG 252
           ++  +++ +T   +VL K D V   +      ++   L+  + L+    ++ +S+  G  
Sbjct: 105 ILEKLKKVKTPVILVLNKIDLVKDKE------ELLPLLEELSELMDFAEIVPISALKGDN 158

Query: 253 IRSLRTVLSK 262
           +  L  V++K
Sbjct: 159 VDELLDVIAK 168

Length = 292

>gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only]

 Score = 51.8 bits (125), Expect = 1e-07
 Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 20/132 (15%)

Query: 92  LPEIAFAGRSNVGKSSMLNALTRQWGVVR---TSDKPGLTQTINFFK---LGTKLCLVDL 145
            P +A  GR NVGKS++ N LT +    R    SD PG+T+   +     LG +  L+D 
Sbjct: 3   TPVVAIVGRPNVGKSTLFNRLTGR----RIAIVSDTPGVTRDRIYGDAEWLGREFILIDT 58

Query: 146 PGYGFAYAKEEVKDAWEELVKEYVSTRVSLKR---VCLLIDTKWGVKPRDHELISLMERS 202
            G       +  +D  +EL++E     ++++    +  ++D + G+ P D E+  ++ RS
Sbjct: 59  GGL-----DDGDEDELQELIRE--QALIAIEEADVILFVVDGREGITPADEEIAKILRRS 111

Query: 203 QTKYQVVLTKTD 214
           +    +V+ K D
Sbjct: 112 KKPVILVVNKID 123

Length = 444

>gnl|CDD|206682 cd01895, EngA2, EngA2 GTPase contains the second domain of EngA

 Score = 50.1 bits (121), Expect = 1e-07
 Identities = 47/174 (27%), Positives = 78/174 (44%), Gaps = 24/174 (13%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ---TINFFKLGTKLCLVDLPGYGFA 151
           IA  GR NVGKSS+LNAL  +  V+  SD  G T+    + F   G K  L+D  G    
Sbjct: 5   IAIIGRPNVGKSSLLNALLGEERVI-VSDIAGTTRDSIDVPFEYDGQKYTLIDTAG---I 60

Query: 152 YAKEEVKDAWEELVKEYVSTRVSLKR---VCLLIDTKWGVKPRDHELISLMERSQTKYQV 208
             K +V +  E+     + T  +++R   V L++D   G+  +D  +  L+        +
Sbjct: 61  RKKGKVTEGIEKYS--VLRTLKAIERADVVLLVLDASEGITEQDLRIAGLILEEGKALII 118

Query: 209 VLTKTDTVFPIDVARRAM--QIEESLK----ANNSLVQPVMMVSSKSGAGIRSL 256
           V+ K D V   +   +    ++   L     A      P++ +S+ +G G+  L
Sbjct: 119 VVNKWDLVEKDEKTMKEFEKELRRKLPFLDYA------PIVFISALTGQGVDKL 166

This EngA2 subfamily CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. Length = 174

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 37/172 (21%), Positives = 67/172 (38%), Gaps = 27/172 (15%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKLG---TKLCLVDLPGYG 149
           I   G  NVGKS++LN L      + T  KPG T+       +      K  L+D  G  
Sbjct: 4   IVIVGDPNVGKSTLLNRLLGNKISI-TEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAG-- 60

Query: 150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVC----LLIDTKWGVKPRDHELISLMERSQTK 205
                   ++ ++ + + Y     S  RV     L++D +  ++ +  E+I   E S   
Sbjct: 61  --------QEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAE-SGVP 111

Query: 206 YQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLR 257
             +V  K D           ++   +        +P++ +S+++G  I S  
Sbjct: 112 IILVGNKIDLRD------AKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAF 157

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206750 cd01857, HSR1_MMR1, A circularly permuted subfamily of the Ras GTPases

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 26/64 (40%), Positives = 30/64 (46%), Gaps = 7/64 (10%)

Query: 87  FPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT---QTINFFKLGTKLCLV 143
           F A +   I   G  NVGKSS++NAL      V  S  PG T   QTI    L   + L 
Sbjct: 77  FSALNEATIGLVGYPNVGKSSLINALVGS-KKVSVSSTPGKTKHFQTIF---LEPGITLC 132

Query: 144 DLPG 147
           D PG
Sbjct: 133 DCPG 136

Human HSR1 is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N-terminus. Length = 140

>gnl|CDD|206681 cd01894, EngA1, EngA1 GTPase contains the first domain of EngA

 Score = 49.0 bits (118), Expect = 2e-07
 Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 21/125 (16%)

Query: 99  GRSNVGKSSMLNALTRQWGVVR---TSDKPGLT---QTINFFKLGTKLCLVDLPGYGFAY 152
           GR NVGKS++ N LT +    R    SD PG+T   +       G +  L+D  G     
Sbjct: 4   GRPNVGKSTLFNRLTGR----RDAIVSDTPGVTRDRKYGEAEWGGREFILIDTGGI---- 55

Query: 153 AKEEVKDAWEELVKEYVSTRVSLKR---VCLLIDTKWGVKPRDHELISLMERSQTKYQVV 209
             E   +   + ++E     ++++    +  ++D + G+ P D E+   + +S+    +V
Sbjct: 56  --EPDDEGISKEIRE--QAEIAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILV 111

Query: 210 LTKTD 214
           + K D
Sbjct: 112 VNKID 116

This EngA1 subfamily CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. Length = 157

>gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only]

 Score = 51.0 bits (123), Expect = 2e-07
 Identities = 49/184 (26%), Positives = 76/184 (41%), Gaps = 42/184 (22%)

Query: 95  IAFAGRSNVGKSSMLNALTRQ-WGVVRTSDKPGLTQTI--NFFKL-GTKLCLVDLPGY-- 148
           +   GR NVGKSS+LNAL  +   +V  +D  G T+ +      L G  + LVD  G   
Sbjct: 220 VVIIGRPNVGKSSLLNALLGRDRAIV--TDIAGTTRDVIEEDINLNGIPVRLVDTAGIRE 277

Query: 149 --------GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLME 200
                   G   AK+ +++A                 V  ++D    +   D  LI L  
Sbjct: 278 TDDVVERIGIERAKKAIEEA---------------DLVLFVLDASQPLDKEDLALIEL-L 321

Query: 201 RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL 260
             +    VVL K D V  I+         ES K  N     ++ +S+K+G G+ +LR  +
Sbjct: 322 PKKKPIIVVLNKADLVSKIE--------LESEKLANG--DAIISISAKTGEGLDALREAI 371

Query: 261 SKIA 264
            ++ 
Sbjct: 372 KQLF 375

Length = 454

>gnl|CDD|234628 PRK00093, PRK00093, GTP-binding protein Der; Reviewed

 Score = 49.3 bits (119), Expect = 7e-07
 Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 25/134 (18%)

Query: 92  LPEIAFAGRSNVGKSSMLNALTRQWGVVR---TSDKPGLT-----QTINFFKLGTKLCLV 143
            P +A  GR NVGKS++ N LT +    R    +D PG+T         +  LG +  L+
Sbjct: 1   KPVVAIVGRPNVGKSTLFNRLTGK----RDAIVADTPGVTRDRIYGEAEW--LGREFILI 54

Query: 144 DLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKR---VCLLIDTKWGVKPRDHELISLME 200
           D  G       E   D +E+ ++E     ++++    +  ++D + G+ P D E+  ++ 
Sbjct: 55  DTGGI------EPDDDGFEKQIRE--QAELAIEEADVILFVVDGRAGLTPADEEIAKILR 106

Query: 201 RSQTKYQVVLTKTD 214
           +S     +V+ K D
Sbjct: 107 KSNKPVILVVNKVD 120

Length = 435

>gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA

 Score = 49.0 bits (118), Expect = 9e-07
 Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 25/131 (19%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVR---TSDKPGLT-----QTINFFKLGTKLCLVDLP 146
           +A  GR NVGKS++ N LT +    R    SD PG+T         +   G +  L+D  
Sbjct: 2   VAIVGRPNVGKSTLFNRLTGK----RDAIVSDTPGVTRDRKYGDAEW--GGREFILIDTG 55

Query: 147 GYGFAYAKEEVKDAWEELVKEYVSTRVSLK---RVCLLIDTKWGVKPRDHELISLMERSQ 203
           G       EE  D  ++ ++E     ++++    +  ++D + G+ P D E+   + +S 
Sbjct: 56  GI------EEDDDGLDKQIRE--QAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSG 107

Query: 204 TKYQVVLTKTD 214
               +V  K D
Sbjct: 108 KPVILVANKID 118

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability [Protein synthesis, Other]. Length = 429

>gnl|CDD|235392 PRK05291, trmE, tRNA modification GTPase TrmE; Reviewed

 Score = 48.6 bits (117), Expect = 1e-06
 Identities = 46/189 (24%), Positives = 72/189 (38%), Gaps = 56/189 (29%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVR----TSDKPG-----LTQTINFFKLGTKLCLVDL 145
           +  AGR NVGKSS+LNAL             +D  G     + + IN    G  L L+D 
Sbjct: 218 VVIAGRPNVGKSSLLNALLG-----EERAIVTDIAGTTRDVIEEHINL--DGIPLRLIDT 270

Query: 146 PGY----------GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHEL 195
            G           G   ++E +++A                 V L++D    +   D E+
Sbjct: 271 AGIRETDDEVEKIGIERSREAIEEA---------------DLVLLVLDASEPLTEEDDEI 315

Query: 196 ISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRS 255
           +   E       VVL K D             +   +       +PV+ +S+K+G GI  
Sbjct: 316 LE--ELKDKPVIVVLNKAD-------------LTGEIDLEEENGKPVIRISAKTGEGIDE 360

Query: 256 LRTVLSKIA 264
           LR  + ++A
Sbjct: 361 LREAIKELA 369

Length = 449

>gnl|CDD|224081 COG1159, Era, GTPase [General function prediction only]

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 42/173 (24%), Positives = 77/173 (44%), Gaps = 17/173 (9%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT----QTINFFKLGTKLCLVDLPGYGF 150
           +A  GR NVGKS++LNAL  Q  +   S KP  T    + I       ++  VD PG   
Sbjct: 9   VAIIGRPNVGKSTLLNALVGQ-KISIVSPKPQTTRNRIRGIVTTD-NAQIIFVDTPGI-- 64

Query: 151 AYAKEEVKDAWEE-LVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVV 209
                + K A  E + K   S    +  +  ++D   G  P D  ++  +++++T   +V
Sbjct: 65  ----HKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILV 120

Query: 210 LTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK 262
           + K D V P       +++   LK      + ++ +S+  G  + +L  ++ +
Sbjct: 121 VNKIDKVKP---KTVLLKLIAFLKKLLP-FKEIVPISALKGDNVDTLLEIIKE 169

Length = 298

>gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA

 Score = 47.8 bits (115), Expect = 3e-06
 Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 12/74 (16%)

Query: 82  KVSSSFPAPDLPE--------IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ---T 130
            +    P  +  E        IA  GR NVGKS+++NAL  +  V+  SD  G T+    
Sbjct: 154 AILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVI-VSDIAGTTRDSID 212

Query: 131 INFFKLGTKLCLVD 144
           I F + G K  L+D
Sbjct: 213 IPFERNGKKYTLID 226

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability [Protein synthesis, Other]. Length = 429

>gnl|CDD|206748 cd01855, YqeH, Circularly permuted YqeH GTPase

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 10/62 (16%)

Query: 97  FAGRSNVGKSSMLNALTRQWGVVR----------TSDKPGLTQTINFFKLGTKLCLVDLP 146
             G +NVGKS+++NAL +  G              S  PG T  +    LG    L D P
Sbjct: 130 VVGATNVGKSTLINALLKSNGGKVQAQALVQRLTVSPIPGTTLGLIKIPLGEGKKLYDTP 189

Query: 147 GY 148
           G 
Sbjct: 190 GI 191

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. Length = 191

>gnl|CDD|217025 pfam02421, FeoB_N, Ferrous iron transport protein B

 Score = 44.8 bits (107), Expect = 9e-06
 Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 11/70 (15%)

Query: 95  IAFAGRSNVGKSSMLNALT--RQWGVVRTSDKPGLTQTIN--FFKL-GTKLCLVDLPG-Y 148
           IA  G  NVGK+++ NALT  RQ       + PG+T       FK  G ++ +VDLPG Y
Sbjct: 3   IALVGNPNVGKTTLFNALTGARQ----HVGNWPGVTVEKKEGTFKYKGYEIEIVDLPGTY 58

Query: 149 GF-AYAKEEV 157
               Y++EE 
Sbjct: 59  SLSPYSEEEK 68

Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. Length = 190

>gnl|CDD|206752 cd01859, MJ1464, An uncharacterized, circularly permuted subfamily of the Ras GTPases

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 4/56 (7%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTS---DKPGLTQTINFFKLGTKLCLVDLPG 147
           +   G   VGKSS++NAL  +     TS     PG T+ I   ++ +K+ L+D PG
Sbjct: 102 VGVVGYPKVGKSSIINALKGR-HSASTSPIPGSPGYTKGIQLVRIDSKIYLIDTPG 156

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. Length = 157

>gnl|CDD|206727 cd04164, trmE, trmE is a tRNA modification GTPase

 Score = 43.6 bits (104), Expect = 1e-05
 Identities = 47/189 (24%), Positives = 81/189 (42%), Gaps = 55/189 (29%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVR----TSDKPG-----LTQTINFFKLGTKLCLVDL 145
           +  AG+ NVGKSS+LNAL       R     SD  G     + + I+    G  + L+D 
Sbjct: 6   VVIAGKPNVGKSSLLNALAG-----RDRAIVSDIAGTTRDVIEEEIDLG--GIPVRLIDT 58

Query: 146 PGY----------GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHEL 195
            G           G   A+E +++A  +L             V L++D   G+   D E+
Sbjct: 59  AGLRETEDEIEKIGIERAREAIEEA--DL-------------VLLVVDASEGLDEEDLEI 103

Query: 196 ISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRS 255
           + L   ++    VVL K+D             + ++   +    +P++ +S+K+G GI  
Sbjct: 104 LEL--PAKKPVIVVLNKSDL------------LSDAEGISELNGKPIIAISAKTGEGIDE 149

Query: 256 LRTVLSKIA 264
           L+  L ++A
Sbjct: 150 LKEALLELA 158

TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. Length = 159

>gnl|CDD|213834 TIGR03597, GTPase_YqeH, ribosome biogenesis GTPase YqeH

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 97  FAGRSNVGKSSMLNALTRQWG----VVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 148
             G +NVGKSS++N L +Q      V+ TS  PG T  +    L     L D PG 
Sbjct: 159 VVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDGHSLYDTPGI 214

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli [Protein synthesis, Other]. Length = 360

>gnl|CDD|223447 COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 8/80 (10%)

Query: 93  PEIAFAGRSNVGKSSMLNALTRQWGV-VRTSDKPGLT---QTINFFKLGTKLCLVDLPG- 147
             +A  G  NVGK+++ NALT   G   +  + PG+T   +       G ++ +VDLPG 
Sbjct: 4   LTVALVGNPNVGKTTLFNALT---GANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGT 60

Query: 148 YGFAYAKEEVKDAWEELVKE 167
           Y      E+ K A + L++ 
Sbjct: 61  YSLTAYSEDEKVARDFLLEG 80

Length = 653

>gnl|CDD|232980 TIGR00450, mnmE_trmE_thdF, tRNA modification GTPase TrmE

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 46/168 (27%), Positives = 73/168 (43%), Gaps = 24/168 (14%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFA 151
           +A  G  NVGKSS+LNAL +Q   +  SD  G T+ +   +F   G  + L+D  G    
Sbjct: 206 LAIVGSPNVGKSSLLNALLKQDRAI-VSDIKGTTRDVVEGDFELNGILIKLLDTAGI--- 261

Query: 152 YAKEEVKDAWEELVKEYVSTRVSLKR---VCLLIDTKWGVKPRDHELISLMERSQTKYQV 208
               E  D  E L  E   +  ++K+   V  ++D    +   D  LI  + +S+  + +
Sbjct: 262 ---REHADFVERLGIE--KSFKAIKQADLVIYVLDASQPLTKDD-FLIIDLNKSKKPFIL 315

Query: 209 VLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL 256
           VL K      ID+   +++   S K  NS    +     K  A +  L
Sbjct: 316 VLNK------IDLKINSLEFFVSSKVLNSSN--LSAKQLKIKALVDLL 355

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer [Protein synthesis, tRNA and rRNA base modification]. Length = 442

>gnl|CDD|129567 TIGR00475, selB, selenocysteine-specific elongation factor SelB

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 40/180 (22%), Positives = 76/180 (42%), Gaps = 27/180 (15%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-----GLTQTINFFKL---GTKLCLVDLP 146
           IA AG  + GK+++L ALT     +     P     G+T  + F        +L  +D+P
Sbjct: 3   IATAGHVDHGKTTLLKALTG----IAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVP 58

Query: 147 GYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKY 206
           G+             E+ +   ++    +    L++D   GV  +  E +++++     +
Sbjct: 59  GH-------------EKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPH 105

Query: 207 Q-VVLTKTDTVFPIDVARRAMQIEESL-KANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 264
             VV+TK D V   ++ R  M +++ L          +   S+K+G GI  L+  L  + 
Sbjct: 106 TIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLL 165

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes [Protein synthesis, Translation factors]. Length = 581

>gnl|CDD|234628 PRK00093, PRK00093, GTP-binding protein Der; Reviewed

 Score = 43.9 bits (105), Expect = 4e-05
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 11/73 (15%)

Query: 82  KVSSSFPAPDLPE-------IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ---TI 131
            +    P  +  +       IA  GR NVGKSS++NAL  +  V+  SD  G T+     
Sbjct: 156 AILEELPEEEEEDEEDEPIKIAIIGRPNVGKSSLINALLGEERVI-VSDIAGTTRDSIDT 214

Query: 132 NFFKLGTKLCLVD 144
            F + G K  L+D
Sbjct: 215 PFERDGQKYTLID 227

Length = 435

>gnl|CDD|225815 COG3276, SelB, Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 40/175 (22%), Positives = 74/175 (42%), Gaps = 21/175 (12%)

Query: 95  IAFAGRSNVGKSSMLNALT-RQWGVVRTSDKPGLTQTINF--FKLGTK-LCLVDLPGYGF 150
           I  AG  + GK+++L ALT      +    K G+T  + F   KL    +  +D+PG+  
Sbjct: 3   IGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGH-- 60

Query: 151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ-VV 209
                       + +   ++    +    L++    G+  +  E + +++    K   +V
Sbjct: 61  -----------PDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIV 109

Query: 210 LTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 264
           LTK D V   D AR   +I++ L   +     +   S+K+G GI  L+  L  + 
Sbjct: 110 LTKADRV---DEARIEQKIKQILADLSLANAKIFKTSAKTGRGIEELKNELIDLL 161

Length = 447

>gnl|CDD|213833 TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-binding protein YlqF

 Score = 42.5 bits (101), Expect = 1e-04
 Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 102 NVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 147
           NVGKS+++N L  +  V +  ++PG+T+   + KL   L L+D PG
Sbjct: 128 NVGKSTLINRLAGK-KVAKVGNRPGVTKGQQWIKLSDGLELLDTPG 172

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members [Protein synthesis, Other]. Length = 276

>gnl|CDD|206739 cd09912, DLP_2, Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins

 Score = 41.8 bits (99), Expect = 1e-04
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 8/57 (14%)

Query: 95  IAFAGRSNVGKSSMLNALTRQ----WGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 147
           +A  G  + GKS++LNAL  +     GV  T+       T+  + L   + LVD PG
Sbjct: 3   LAVVGEFSAGKSTLLNALLGEEVLPTGVTPTTAVI----TVLRYGLLKGVVLVDTPG 55

The dynamin family of large mechanochemical GTPases includes the classical dynamins and dynamin-like proteins (DLPs) that are found throughout the Eukarya. This family also includes bacterial DLPs. These proteins catalyze membrane fission during clathrin-mediated endocytosis. Dynamin consists of five domains; an N-terminal G domain that binds and hydrolyzes GTP, a middle domain (MD) involved in self-assembly and oligomerization, a pleckstrin homology (PH) domain responsible for interactions with the plasma membrane, GED, which is also involved in self-assembly, and a proline arginine rich domain (PRD) that interacts with SH3 domains on accessory proteins. To date, three vertebrate dynamin genes have been identified; dynamin 1, which is brain specific, mediates uptake of synaptic vesicles in presynaptic terminals; dynamin-2 is expressed ubiquitously and similarly participates in membrane fission; mutations in the MD, PH and GED domains of dynamin 2 have been linked to human diseases such as Charcot-Marie-Tooth peripheral neuropathy and rare forms of centronuclear myopathy. Dynamin 3 participates in megakaryocyte progenitor amplification, and is also involved in cytoplasmic enlargement and the formation of the demarcation membrane system. This family also includes mitofusins (MFN1 and MFN2 in mammals) that are involved in mitochondrial fusion. Dynamin oligomerizes into helical structures around the neck of budding vesicles in a GTP hydrolysis-dependent manner. Length = 180

>gnl|CDD|206667 cd01879, FeoB, Ferrous iron transport protein B (FeoB) family

 Score = 41.3 bits (98), Expect = 1e-04
 Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 11/68 (16%)

Query: 96  AFAGRSNVGKSSMLNALT--RQWGVVRTSDKPGLT--QTINFFKLGTKLC-LVDLPG-YG 149
           A  G  NVGK+++ NALT  RQ    +  + PG+T  +    FKLG K   +VDLPG Y 
Sbjct: 1   ALVGNPNVGKTTLFNALTGARQ----KVGNWPGVTVEKKEGEFKLGGKEIEIVDLPGTYS 56

Query: 150 F-AYAKEE 156
              Y+++E
Sbjct: 57  LTPYSEDE 64

Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. Length = 159

>gnl|CDD|206753 cd04178, Nucleostemin_like, A circularly permuted subfamily of the Ras GTPases

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 102 NVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 148
           NVGKSS++N+L R          PG+T+++    L   + L+D PG 
Sbjct: 126 NVGKSSVINSLKRS-RACNVGATPGVTKSMQEVHLDKHVKLLDSPGV 171

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the protein. Length = 171

>gnl|CDD|206668 cd01881, Obg_like, Obg-like family of GTPases consist of five subfamilies: Obg, DRG, YyaF/YchF, Ygr210, and NOG1

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 6/56 (10%)

Query: 96  AFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF----FKLGTKLCLVDLPG 147
              G  NVGKS++L+ALT     V  +  P  T   N     F  G  + ++DLPG
Sbjct: 1   GLVGLPNVGKSTLLSALTS--AKVEIASYPFTTLEPNVGVFEFGDGVDIQIIDLPG 54

The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to form one major branch of the Obg family and the Ygr210 and YchF subfamilies form another branch. No GEFs, GAPs, or GDIs for Obg have been identified. Length = 167

>gnl|CDD|206746 cd01849, YlqF_related_GTPase, Circularly permuted YlqF-related GTPases

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 147
           +   G  NVGKSS +NAL  ++  ++    PG T+     KL  ++ L D PG
Sbjct: 94  VGVVGLPNVGKSSFINALLNKFK-LKVGSIPGTTKLQQDVKLDKEIYLYDTPG 145

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. Length = 146

>gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only]

 Score = 39.9 bits (94), Expect = 9e-04
 Identities = 48/170 (28%), Positives = 83/170 (48%), Gaps = 16/170 (9%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ---TINFFKLGTKLCLVDLPGYGFA 151
           IA  GR NVGKSS++NA+  +  V+  SD  G T+    I F + G K  L+D  G    
Sbjct: 181 IAIIGRPNVGKSSLINAILGEERVI-VSDIAGTTRDSIDIEFERDGRKYVLIDTAG---I 236

Query: 152 YAKEEVKDAWEELVKEYVSTRVSLKR---VCLLIDTKWGVKPRDHELISLMERSQTKYQV 208
             K ++ ++ E+       T  +++R   V L+ID   G+  +D  +  L+E +     +
Sbjct: 237 RRKGKITESVEKY--SVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVI 294

Query: 209 VLTKTDTVFPIDVARRAMQIEESLKANNSLV--QPVMMVSSKSGAGIRSL 256
           V+ K D V   D A    + ++ L+     +   P++ +S+ +G G+  L
Sbjct: 295 VVNKWDLVEE-DEATME-EFKKKLRRKLPFLDFAPIVFISALTGQGLDKL 342

Length = 444

>gnl|CDD|236546 PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der; Reviewed

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 52  LDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAPD-LPEIAFAGRSNVGKSSMLN 110
           L   P+  S+   R   ++    L+    A+ +S F  P  L  +A  GR NVGKSS+LN
Sbjct: 410 LGE-PYPISAMHGRGVGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLN 468

Query: 111 ALTRQ 115
            LT +
Sbjct: 469 QLTHE 473

Length = 712

>gnl|CDD|236570 PRK09563, rbgA, GTPase YlqF; Reviewed

 Score = 39.0 bits (92), Expect = 0.001
 Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 1/46 (2%)

Query: 102 NVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 147
           NVGKS+++N L  +  + +T ++PG+T+   + KLG  L L+D PG
Sbjct: 131 NVGKSTLINRLAGK-KIAKTGNRPGVTKAQQWIKLGKGLELLDTPG 175

Length = 287

>gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258

 Score = 37.9 bits (89), Expect = 0.001
 Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 10/82 (12%)

Query: 95  IAFAGRSNVGKSSMLNALT---RQW-GVVRTSDKPG--LTQTINFFKLGTKLCLVDLPG- 147
              AG+S VGKS++LNAL        G +      G   T  +  F L     L+D PG 
Sbjct: 38  SVLAGQSGVGKSTLLNALLPELDLRTGEISEKLGRGRHTTTHVELFPLPGGGLLIDTPGF 97

Query: 148 --YGFAY-AKEEVKDAWEELVK 166
              G  +   EE+ + + E  +
Sbjct: 98  RELGLWHLDPEELAEYFPEFRE 119

Length = 161

>gnl|CDD|206751 cd01858, NGP_1, A novel nucleolar GTP-binding protein, circularly permuted subfamily of the Ras GTPases

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 147
           + F G  NVGKSS++N L R   V + +  PG T+   +  L  ++ L+D PG
Sbjct: 105 VGFIGYPNVGKSSVINTL-RSKKVCKVAPIPGETKVWQYITLMKRIYLIDCPG 156

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. Length = 157

>gnl|CDD|215653 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain

 Score = 37.5 bits (88), Expect = 0.002
 Identities = 41/186 (22%), Positives = 61/186 (32%), Gaps = 41/186 (22%)

Query: 95  IAFAGRSNVGKSSMLNALT--------RQWGVVRTSDKP------GLTQTINFFKLGTKL 140
           I   G  + GK+++ +AL               R  DK       G+T  I      TK 
Sbjct: 6   IGIIGHVDHGKTTLTDALLYVTGAISKESAKGARVLDKLKEERERGITIKIAAVSFETKK 65

Query: 141 C---LVDLPGYGFAYAKEEVKDAWEELVKE-YVSTRVSLKRVCLLIDTKWGVKPRDHELI 196
               ++D PG+              +  KE             L++D   GV P+  E +
Sbjct: 66  RLINIIDTPGH-------------VDFTKEMIRGASQ-ADGAILVVDAVEGVMPQTREHL 111

Query: 197 SLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE------SLKANNSLVQPVMMVSSKSG 250
            L +       V + K D V   D A     +EE                PV+  S+ +G
Sbjct: 112 LLAKTLGVPIIVFINKIDRV---DDAELEEVVEEISRELLEKYGFGGETVPVVPGSALTG 168

Query: 251 AGIRSL 256
            GI  L
Sbjct: 169 EGIDEL 174

This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. Length = 184

>gnl|CDD|224084 COG1162, COG1162, Predicted GTPases [General function prediction only]

 Score = 37.7 bits (88), Expect = 0.004
 Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 10/79 (12%)

Query: 96  AFAGRSNVGKSSMLNAL----TRQWGVVRTSDKPG--LTQTINFFKLGTKLCLVDLPGY- 148
              G+S VGKS+++NAL     ++ G +      G   T  +  F L     ++D PG+ 
Sbjct: 168 VLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGWIIDTPGFR 227

Query: 149 --GFAYA-KEEVKDAWEEL 164
             G A+   E++  A+ E 
Sbjct: 228 SLGLAHLEPEDLVQAFPEF 246

Length = 301

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	269
COG0218	200	Predicted GTPase [General function prediction only	100.0
COG0486	454	ThdF Predicted GTPase [General function prediction	100.0
COG2262	411	HflX GTPases [General function prediction only]	100.0
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.97
PRK11058	426	GTPase HflX; Provisional	99.97
COG1159	298	Era GTPase [General function prediction only]	99.96
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.96
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.96
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.95
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.95
COG1160	444	Predicted GTPases [General function prediction onl	99.95
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.94
COG1160	444	Predicted GTPases [General function prediction onl	99.94
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.94
PRK04213	201	GTP-binding protein; Provisional	99.93
PRK00089	292	era GTPase Era; Reviewed	99.92
PRK15494	339	era GTPase Era; Provisional	99.92
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.92
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.92
PRK12298	390	obgE GTPase CgtA; Reviewed	99.91
PRK00093	435	GTP-binding protein Der; Reviewed	99.91
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.91
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.91
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.91
PRK03003	472	GTP-binding protein Der; Reviewed	99.91
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.91
PRK12299	335	obgE GTPase CgtA; Reviewed	99.91
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.91
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.91
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.9
PRK12297	424	obgE GTPase CgtA; Reviewed	99.9
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.9
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.9
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.9
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.9
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.9
PRK03003	472	GTP-binding protein Der; Reviewed	99.9
PRK12296	500	obgE GTPase CgtA; Reviewed	99.9
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.9
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.9
cd00881	189	GTP_translation_factor GTP translation factor fami	99.89
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.89
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.89
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.89
PRK00093	435	GTP-binding protein Der; Reviewed	99.88
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.88
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.88
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.87
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.87
PRK09866	741	hypothetical protein; Provisional	99.87
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.87
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.87
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.87
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.87
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.86
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.86
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.86
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.86
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.86
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.86
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.86
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.86
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.85
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.85
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.85
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.85
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.85
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.85
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.85
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.85
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.85
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.85
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.85
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.85
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.85
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.85
COG1084	346	Predicted GTPase [General function prediction only	99.84
CHL00189	742	infB translation initiation factor 2; Provisional	99.84
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.84
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.84
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.84
KOG0410	410	consensus Predicted GTP binding protein [General f	99.84
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.84
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.84
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.84
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.84
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.84
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.84
PRK12317	425	elongation factor 1-alpha; Reviewed	99.84
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.84
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.84
COG1163	365	DRG Predicted GTPase [General function prediction	99.84
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.84
PRK05306	787	infB translation initiation factor IF-2; Validated	99.83
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.83
PTZ00133	182	ADP-ribosylation factor; Provisional	99.83
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.83
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.83
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.83
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.83
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.83
PLN00223	181	ADP-ribosylation factor; Provisional	99.83
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.83
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.83
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.83
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.83
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.83
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.83
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.83
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.82
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.82
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.82
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.82
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.82
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.82
CHL00071	409	tufA elongation factor Tu	99.82
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.82
PTZ00369	189	Ras-like protein; Provisional	99.82
PLN03118	211	Rab family protein; Provisional	99.82
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.82
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.82
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.82
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.82
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.82
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.82
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.82
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.82
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.82
PRK12736	394	elongation factor Tu; Reviewed	99.82
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.82
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.81
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.81
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.81
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.81
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.81
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.81
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.81
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.81
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.81
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.81
COG3596	296	Predicted GTPase [General function prediction only	99.81
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.81
COG0536	369	Obg Predicted GTPase [General function prediction	99.81
PRK04004	586	translation initiation factor IF-2; Validated	99.81
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.81
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.81
PRK12735	396	elongation factor Tu; Reviewed	99.81
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.8
PLN03110	216	Rab GTPase; Provisional	99.8
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.8
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.8
KOG2486	320	consensus Predicted GTPase [General function predi	99.8
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.8
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.8
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.8
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.8
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.8
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.8
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.8
PLN03127	447	Elongation factor Tu; Provisional	99.8
PRK00049	396	elongation factor Tu; Reviewed	99.79
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.79
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.79
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.79
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.79
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.79
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.79
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.79
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.79
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.79
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.79
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.78
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.78
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.78
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.78
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.78
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.78
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.78
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.78
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.78
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.78
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.78
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.78
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.77
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.77
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.77
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.77
PLN03108	210	Rab family protein; Provisional	99.77
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.77
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.77
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.77
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.77
PLN03126	478	Elongation factor Tu; Provisional	99.77
KOG1145	683	consensus Mitochondrial translation initiation fac	99.77
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	99.77
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.76
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.76
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.75
PRK05433	600	GTP-binding protein LepA; Provisional	99.75
PRK10218	607	GTP-binding protein; Provisional	99.75
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.75
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.74
PTZ00141	446	elongation factor 1- alpha; Provisional	99.74
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.74
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.74
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.73
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.73
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.73
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	99.73
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	99.72
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.72
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.72
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.72
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.72
KOG0394	210	consensus Ras-related GTPase [General function pre	99.71
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.71
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.71
PRK00007	693	elongation factor G; Reviewed	99.71
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.71
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.71
PRK12739	691	elongation factor G; Reviewed	99.71
PRK09602	396	translation-associated GTPase; Reviewed	99.7
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.7
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.69
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.69
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.69
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	99.69
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.67
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.67
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.67
PTZ00258	390	GTP-binding protein; Provisional	99.66
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.66
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.66
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.66
PLN00043	447	elongation factor 1-alpha; Provisional	99.65
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.64
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.63
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.63
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.63
PRK13351	687	elongation factor G; Reviewed	99.63
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	99.63
COG2229	187	Predicted GTPase [General function prediction only	99.63
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.62
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	99.62
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.6
PRK13768	253	GTPase; Provisional	99.6
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.59
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	99.59
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.59
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.59
COG1100	219	GTPase SAR1 and related small G proteins [General	99.58
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.58
PRK14845	1049	translation initiation factor IF-2; Provisional	99.58
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	99.58
PRK09601	364	GTP-binding protein YchF; Reviewed	99.58
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.56
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	99.56
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.55
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	99.55
PRK12740	668	elongation factor G; Reviewed	99.55
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.55
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.55
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.54
PTZ00416	836	elongation factor 2; Provisional	99.54
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.54
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	99.54
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.53
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.52
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.51
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.51
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.51
KOG0395	196	consensus Ras-related GTPase [General function pre	99.51
KOG0090	238	consensus Signal recognition particle receptor, be	99.5
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.5
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.5
PRK07560	731	elongation factor EF-2; Reviewed	99.49
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	99.48
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	99.48
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.48
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.48
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	99.47
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	99.47
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.45
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	99.45
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.44
PLN00023	334	GTP-binding protein; Provisional	99.44
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.44
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.43
COG5019	373	CDC3 Septin family protein [Cell division and chro	99.43
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.42
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	99.42
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.4
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.4
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.39
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	99.39
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	99.39
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.36
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	99.35
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.34
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	99.34
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	99.33
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	99.32
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.3
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.3
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.29
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	99.29
COG1161	322	Predicted GTPases [General function prediction onl	99.28
PTZ00099	176	rab6; Provisional	99.28
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.27
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	99.27
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.26
KOG0466	466	consensus Translation initiation factor 2, gamma s	99.26
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	99.26
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.25
KOG1143	591	consensus Predicted translation elongation factor	99.24
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.24
COG5258	527	GTPBP1 GTPase [General function prediction only]	99.24
PRK09563	287	rbgA GTPase YlqF; Reviewed	99.24
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.24
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	99.22
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.21
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	99.21
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.2
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	99.2
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	99.19
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.16
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	99.12
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	99.1
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	99.09
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.09
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	99.07
PRK13796	365	GTPase YqeH; Provisional	99.07
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	99.07
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	99.05
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.05
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.05
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.05
PRK12289	352	GTPase RsgA; Reviewed	99.04
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.03
PRK12288	347	GTPase RsgA; Reviewed	99.02
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.98
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.98
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.96
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.95
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.95
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.95
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.95
KOG0460	449	consensus Mitochondrial translation elongation fac	98.92
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.87
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.86
PRK00098	298	GTPase RsgA; Reviewed	98.86
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	98.86
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.84
KOG2484	435	consensus GTPase [General function prediction only	98.82
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.81
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	98.81
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.79
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.79
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.77
COG1162	301	Predicted GTPases [General function prediction onl	98.75
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	98.75
KOG3886	295	consensus GTP-binding protein [Signal transduction	98.74
PRK12289	352	GTPase RsgA; Reviewed	98.73
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.72
KOG2423	572	consensus Nucleolar GTPase [General function predi	98.68
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.68
COG0523	323	Putative GTPases (G3E family) [General function pr	98.68
cd03112	158	CobW_like The function of this protein family is u	98.67
PRK10416	318	signal recognition particle-docking protein FtsY;	98.63
PRK00098	298	GTPase RsgA; Reviewed	98.61
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.6
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.6
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	98.57
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.56
PRK14974	336	cell division protein FtsY; Provisional	98.53
PRK12288	347	GTPase RsgA; Reviewed	98.53
COG3523	1188	IcmF Type VI protein secretion system component Va	98.52
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	98.51
PRK01889	356	GTPase RsgA; Reviewed	98.49
KOG1673	205	consensus Ras GTPases [General function prediction	98.47
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	98.43
PRK13796	365	GTPase YqeH; Provisional	98.4
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	98.37
PRK11537	318	putative GTP-binding protein YjiA; Provisional	98.34
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	98.32
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	98.3
KOG1534	273	consensus Putative transcription factor FET5 [Tran	98.29
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.29
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	98.27
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.25
PRK00771	437	signal recognition particle protein Srp54; Provisi	98.25
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.23
cd03114	148	ArgK-like The function of this protein family is u	98.23
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.2
KOG2743	391	consensus Cobalamin synthesis protein [Coenzyme tr	98.18
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.14
PRK10867	433	signal recognition particle protein; Provisional	98.07
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	98.04
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	98.02
TIGR00959	428	ffh signal recognition particle protein. This mode	97.98
PRK01889	356	GTPase RsgA; Reviewed	97.94
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.93
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.93
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	97.93
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	97.92
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	97.9
KOG0082	354	consensus G-protein alpha subunit (small G protein	97.87
KOG2484	435	consensus GTPase [General function prediction only	97.86
KOG0780	483	consensus Signal recognition particle, subunit Srp	97.86
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	97.86
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.83
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	97.81
COG1162	301	Predicted GTPases [General function prediction onl	97.8
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.79
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.78
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.76
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.75
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.75
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.73
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.72
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.66
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	97.61
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.5
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	97.48
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.47
PF00004	132	AAA: ATPase family associated with various cellula	97.43
KOG1533	290	consensus Predicted GTPase [General function predi	97.43
KOG2423	572	consensus Nucleolar GTPase [General function predi	97.31
PRK13695	174	putative NTPase; Provisional	97.3
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	97.26
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.26
COG1161	322	Predicted GTPases [General function prediction onl	97.23
KOG0781	587	consensus Signal recognition particle receptor, al	97.23
KOG3887	347	consensus Predicted small GTPase involved in nucle	97.17
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	97.16
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	97.14
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.14
KOG0446	657	consensus Vacuolar sorting protein VPS1, dynamin,	97.14
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.1
PRK14737	186	gmk guanylate kinase; Provisional	97.08
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.07
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.06
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.04
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	97.0
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	96.99
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	96.98
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	96.97
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	96.96
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	96.95
PRK14738	206	gmk guanylate kinase; Provisional	96.91
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	96.9
PF02263	260	GBP: Guanylate-binding protein, N-terminal domain;	96.9
cd02036	179	MinD Bacterial cell division requires the formatio	96.88
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	96.87
cd03111	106	CpaE_like This protein family consists of proteins	96.84
KOG4181	491	consensus Uncharacterized conserved protein [Funct	96.84
PRK04195	482	replication factor C large subunit; Provisional	96.81
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	96.77
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	96.75
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	96.74
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	96.71
TIGR00235	207	udk uridine kinase. Model contains a number of lon	96.7
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	96.7
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	96.7
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	96.7
PF07015	231	VirC1: VirC1 protein; InterPro: IPR009744 This fam	96.69
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	96.69
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	96.67
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	96.67
PRK07261	171	topology modulation protein; Provisional	96.67
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	96.66
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	96.65
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	96.65
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	96.64
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	96.63
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	96.63
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	96.62
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	96.62
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	96.62
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	96.62
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	96.6
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	96.6
PRK14530	215	adenylate kinase; Provisional	96.6
PRK08118	167	topology modulation protein; Reviewed	96.59
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	96.58
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	96.58
COG4559	259	ABC-type hemin transport system, ATPase component	96.57
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	96.57
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	96.57
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	96.57
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	96.57
cd03269	210	ABC_putative_ATPase This subfamily is involved in	96.56
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	96.56
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	96.56
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	96.55
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	96.55
cd03216	163	ABC_Carb_Monos_I This family represents the domain	96.54
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	96.53
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	96.53
smart00382	148	AAA ATPases associated with a variety of cellular	96.53

>COG0218 Predicted GTPase [General function prediction only]

Probab=100.00  E-value=6.2e-33  Score=219.68  Aligned_cols=188  Identities=43%  Similarity=0.614  Sum_probs=165.3

Q ss_pred             HhhhccCCCCCCCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHH
Q 024325           79 AAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVK  158 (269)
Q Consensus        79 ~~~~~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~  158 (269)
                      .++.....+|....|.|+++|++|+|||||||+|++....+.+|..||.|+-++++..+..+.+||.||+|+...+....
T Consensus        11 ~sa~~~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~~~lVDlPGYGyAkv~k~~~   90 (200)
T COG0218          11 TSAPDIKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDELRLVDLPGYGYAKVPKEVK   90 (200)
T ss_pred             EecCCHhhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCcEEEEeCCCcccccCCHHHH
Confidence            34445667888899999999999999999999999976789999999999999999998889999999999998888899


Q ss_pred             HHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCC
Q 024325          159 DAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSL  238 (269)
Q Consensus       159 ~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  238 (269)
                      +.|..++.+|+....+..++++++|+.+++...|.++++++...++|+++|+||+|.+...+..+....+.+.+......
T Consensus        91 e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~  170 (200)
T COG0218          91 EKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPD  170 (200)
T ss_pred             HHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999877776666666555433222


Q ss_pred             CCCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325          239 VQPVMMVSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       239 ~~~vi~vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      ...++..|+.++.|+++|...|.+.+..
T Consensus       171 ~~~~~~~ss~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         171 DQWVVLFSSLKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             cceEEEEecccccCHHHHHHHHHHHhhc
Confidence            2228999999999999999999887654

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=100.00  E-value=2.5e-33  Score=246.13  Aligned_cols=232  Identities=24%  Similarity=0.264  Sum_probs=173.8

Q ss_pred             hhhhhcCCCchhhHHHHHhcCCCcceeeeeccccccccCCCCCCCCCCChhhhhhhhhhhhchhhhHHHhhhccCCCCCC
Q 024325           11 AQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAP   90 (269)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~   90 (269)
                      |+-.+++...+.+..+...|  +..+++.++ .+|+.+|||+|++|+........-.+.+.....++++..+....+  .
T Consensus       141 a~r~A~~~l~G~ls~~i~~l--r~~li~~~a-~vEa~IDfpeedi~~~~~~~i~~~l~~~~~~l~~ll~~~~~g~il--r  215 (454)
T COG0486         141 AARIALRQLQGALSQLINEL--REALLELLA-QVEANIDFPEEDIEELVLEKIREKLEELIAELDELLATAKQGKIL--R  215 (454)
T ss_pred             HHHHHHHHcCCcHHHHHHHH--HHHHHHHHH-HheEeCCCCcccccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhh--h
Confidence            34455666777777788888  667788888 899999999998887776554443334444444455554444433  3


Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcch---hHHHHHHHHHH
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYA---KEEVKDAWEEL  164 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~---~~~~~~~~~~~  164 (269)
                      ...+++++|.||+|||||+|+|+++ +.++|+++||||||+....   .|.++.++||+|++++..   +.+++..|   
T Consensus       216 ~G~kvvIiG~PNvGKSSLLNaL~~~-d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~---  291 (454)
T COG0486         216 EGLKVVIIGRPNVGKSSLLNALLGR-DRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAK---  291 (454)
T ss_pred             cCceEEEECCCCCcHHHHHHHHhcC-CceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHH---
Confidence            5679999999999999999999999 7799999999999986544   388999999999997632   22233333   


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEE
Q 024325          165 VKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM  244 (269)
Q Consensus       165 ~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~  244 (269)
                           .....+|.++||+|++.+++..+..++. +...++|+++|+||+|+..+......        .  .....+++.
T Consensus       292 -----~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~~~~~--------~--~~~~~~~i~  355 (454)
T COG0486         292 -----KAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSKIELESE--------K--LANGDAIIS  355 (454)
T ss_pred             -----HHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhcccccccchh--------h--ccCCCceEE
Confidence                 3334499999999999877788877777 44457899999999999987553221        0  012457999


Q ss_pred             eeCCCCCCHHHHHHHHHHhhhhh
Q 024325          245 VSSKSGAGIRSLRTVLSKIARFA  267 (269)
Q Consensus       245 vSa~~g~gi~~L~~~i~~~~~~~  267 (269)
                      +||++|+|++.|.+.|...+.+.
T Consensus       356 iSa~t~~Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         356 ISAKTGEGLDALREAIKQLFGKG  378 (454)
T ss_pred             EEecCccCHHHHHHHHHHHHhhc
Confidence            99999999999999999887653

>COG2262 HflX GTPases [General function prediction only]

Probab=100.00  E-value=1e-32  Score=238.32  Aligned_cols=235  Identities=21%  Similarity=0.233  Sum_probs=173.2

Q ss_pred             chhhhhhhhcCCCchhhHHHHHhcCCCcceeeeeccccccccCCCCCCCCCCChhhhhhhhhhhhchhhh--HHHhh--h
Q 024325            7 MSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLE--FFAAA--K   82 (269)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~--~~~~~--~   82 (269)
                      +-++.+.-+||+++++|+|.+||+.+.|..+.  ++|.+++.++|+|.   ..+.+++.+..++...+.+  .+...  .
T Consensus       108 ~RA~S~EgkLQVeLAqL~Y~lpRl~~~~~~l~--~~GggiG~rGpGE~---~lE~drR~ir~rI~~i~~eLe~v~~~R~~  182 (411)
T COG2262         108 QRARSREGKLQVELAQLRYELPRLVGSGSHLS--RLGGGIGFRGPGET---QLETDRRRIRRRIAKLKRELENVEKAREP  182 (411)
T ss_pred             HHhccchhhhhhhHHhhhhhhhHhHhhhhhcc--cccCCCCCCCCCch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455667799999999999999999998877  33566678999886   6777888999988654433  33332  2


Q ss_pred             ccCCCCCCCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE----EeCCcEEEEcCCCCCCcchhHHHH
Q 024325           83 VSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF----KLGTKLCLVDLPGYGFAYAKEEVK  158 (269)
Q Consensus        83 ~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~----~~~~~~~lvDtpG~~~~~~~~~~~  158 (269)
                      .++.+.+.+.|.|+++|++|||||||+|+|++..  ..+.+..++|.|....    ..+..+.+-||.||...       
T Consensus       183 ~R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~--~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~-------  253 (411)
T COG2262         183 RRKKRSRSGIPLVALVGYTNAGKSTLFNALTGAD--VYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRD-------  253 (411)
T ss_pred             HhhhhcccCCCeEEEEeeccccHHHHHHHHhccC--eeccccccccccCceeEEEeCCCceEEEecCccCccc-------
Confidence            4566666889999999999999999999999874  5567777777665432    22678999999999653       


Q ss_pred             HHHHHHHHHHHhccc---ccceEEEEEeCCCCCCcch----HHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHH
Q 024325          159 DAWEELVKEYVSTRV---SLKRVCLLIDTKWGVKPRD----HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEES  231 (269)
Q Consensus       159 ~~~~~~~~~~~~~~~---~~d~vl~vid~~~~~~~~~----~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~  231 (269)
                       .+..++..|.++++   .+|++++|+|++++.....    ..++..+....+|+|+|+||+|++.+...   ...    
T Consensus       254 -LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~---~~~----  325 (411)
T COG2262         254 -LPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEI---LAE----  325 (411)
T ss_pred             -CChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhh---hhh----
Confidence             44566666666665   4999999999997632222    23444444456899999999999876541   111    


Q ss_pred             HHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325          232 LKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       232 ~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      +...   ..+.+++||++|+|++.|++.|.+.+..
T Consensus       326 ~~~~---~~~~v~iSA~~~~gl~~L~~~i~~~l~~  357 (411)
T COG2262         326 LERG---SPNPVFISAKTGEGLDLLRERIIELLSG  357 (411)
T ss_pred             hhhc---CCCeEEEEeccCcCHHHHHHHHHHHhhh
Confidence            1111   1258999999999999999999987753

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.97  E-value=4.3e-30  Score=226.10  Aligned_cols=233  Identities=18%  Similarity=0.216  Sum_probs=153.7

Q ss_pred             hhhhhhhhcCCCchhhHHHHHhcCCCcceeeeeccccccccCCCCCCCCCCChhhhhhhhhhhhchhhh--HHHhhh--c
Q 024325            8 SKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLE--FFAAAK--V   83 (269)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~--~   83 (269)
                      -+..|..+||++.++++|.++++.+.++.+....  .+++.+||+|+   ....+++.+.+++.....+  .+...+  .
T Consensus       106 ra~t~e~klqv~la~l~~~l~r~~~~~~~l~~~~--~~i~~~g~gE~---~~~~~~~~i~~ri~~l~~~L~~~~~~~~~~  180 (351)
T TIGR03156       106 RARTHEGKLQVELAQLKYLLPRLVGGWTHLSRQG--GGIGTRGPGET---QLETDRRLIRERIAQLKKELEKVEKQRERQ  180 (351)
T ss_pred             hccChHHHHHHHHHhccchhhhhhhhHHHHHhhc--CCCCCCCCChh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455667799999999999999988776654444  33345777764   2244566677666433322  222221  2


Q ss_pred             cCCCCCCCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE----eCCcEEEEcCCCCCCcchhHHHHH
Q 024325           84 SSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVKD  159 (269)
Q Consensus        84 ~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~----~~~~~~lvDtpG~~~~~~~~~~~~  159 (269)
                      +..+.+.+.++|+++|+||+|||||+|+|++. . ..+++.+++|.|.....    .+..+.+|||||+...... ...+
T Consensus       181 r~~r~~~~~~~ValvG~~NvGKSSLln~L~~~-~-~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~-~lie  257 (351)
T TIGR03156       181 RRRRKRADVPTVALVGYTNAGKSTLFNALTGA-D-VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPH-ELVA  257 (351)
T ss_pred             HhhhcccCCcEEEEECCCCCCHHHHHHHHhCC-c-eeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCH-HHHH
Confidence            33333356799999999999999999999998 3 67888899998874322    3568999999998432111 1122


Q ss_pred             HHHHHHHHHHhcccccceEEEEEeCCCCCCcchH----HHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhc
Q 024325          160 AWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH----ELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN  235 (269)
Q Consensus       160 ~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~----~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~  235 (269)
                      .+....    .....+|++++|+|++++....+.    .++..+...++|+++|+||+|+.+.....    ..    .. 
T Consensus       258 ~f~~tl----e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v~----~~----~~-  324 (351)
T TIGR03156       258 AFRATL----EEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRIE----RL----EE-  324 (351)
T ss_pred             HHHHHH----HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHhHH----HH----Hh-
Confidence            222222    223349999999999865443332    23333333368999999999997643221    11    11 


Q ss_pred             CCCCCCeEEeeCCCCCCHHHHHHHHHHh
Q 024325          236 NSLVQPVMMVSSKSGAGIRSLRTVLSKI  263 (269)
Q Consensus       236 ~~~~~~vi~vSa~~g~gi~~L~~~i~~~  263 (269)
                        ...+++++||++|.|+++|+++|.+.
T Consensus       325 --~~~~~i~iSAktg~GI~eL~~~I~~~  350 (351)
T TIGR03156       325 --GYPEAVFVSAKTGEGLDLLLEAIAER  350 (351)
T ss_pred             --CCCCEEEEEccCCCCHHHHHHHHHhh
Confidence              12468999999999999999999764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>PRK11058 GTPase HflX; Provisional

Probab=99.97  E-value=1.4e-29  Score=227.72  Aligned_cols=237  Identities=16%  Similarity=0.207  Sum_probs=157.4

Q ss_pred             chhhhhhhhcCCCchhhHHHHHhcCCCcceeeeeccccccccCCCCCCCCCCChhhhhhhhhhhhchhhhHHH--hhh--
Q 024325            7 MSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLEFFA--AAK--   82 (269)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~--   82 (269)
                      +-+..|..+||+++|+|+|.+|||.+.+..+..++  .+++.++|+|.   ..+.+++.+.+++.....++..  ..+  
T Consensus       113 ~rA~t~e~klqvelA~l~y~~prl~~~~~~l~~~~--gg~g~~g~ge~---~~e~d~r~i~~ri~~l~~~L~~~~~~r~~  187 (426)
T PRK11058        113 QRARTHEGKLQVELAQLRHLATRLVRGWTHLERQK--GGIGLRGPGET---QLETDRRLLRNRIVQILSRLERVEKQREQ  187 (426)
T ss_pred             HhcCChHHHHHHHHHhhhhhhhhhhccccchhhhc--CCCCCCCCChh---HhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            34455677799999999999999988886655554  44557888875   5566677777776443322221  111  


Q ss_pred             ccCCCCCCCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE--e-C-CcEEEEcCCCCCCcchhHHHH
Q 024325           83 VSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--L-G-TKLCLVDLPGYGFAYAKEEVK  158 (269)
Q Consensus        83 ~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~--~-~-~~~~lvDtpG~~~~~~~~~~~  158 (269)
                      .+..+...+.|+|+++|+||||||||+|+|++. .. .+++.+++|.|.....  . + ..+.+|||||+.... +....
T Consensus       188 ~r~~r~~~~~p~ValVG~~NaGKSSLlN~Lt~~-~~-~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~l-p~~lv  264 (426)
T PRK11058        188 GRRARIKADVPTVSLVGYTNAGKSTLFNRITEA-RV-YAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHL-PHDLV  264 (426)
T ss_pred             HHHHhhhcCCCEEEEECCCCCCHHHHHHHHhCC-ce-eeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccC-CHHHH
Confidence            122222346789999999999999999999998 43 4788899998875422  1 3 378999999984321 11111


Q ss_pred             HHHHHHHHHHHhcccccceEEEEEeCCCCCCcchH----HHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHh
Q 024325          159 DAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH----ELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA  234 (269)
Q Consensus       159 ~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~----~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~  234 (269)
                      +.+..    .......+|++++|+|++++....+.    .++..+...++|+++|+||+|+.+.... .    +.. . .
T Consensus       265 e~f~~----tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~-~----~~~-~-~  333 (426)
T PRK11058        265 AAFKA----TLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEP-R----IDR-D-E  333 (426)
T ss_pred             HHHHH----HHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhH-H----HHH-H-h
Confidence            22221    22334459999999999875433332    2344444446899999999999754211 1    110 0 1


Q ss_pred             cCCCCCC-eEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          235 NNSLVQP-VMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       235 ~~~~~~~-vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                         ...+ ++++||++|+|+++|+++|.+.+.
T Consensus       334 ---~~~~~~v~ISAktG~GIdeL~e~I~~~l~  362 (426)
T PRK11058        334 ---ENKPIRVWLSAQTGAGIPLLFQALTERLS  362 (426)
T ss_pred             ---cCCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence               1233 589999999999999999988764

>COG1159 Era GTPase [General function prediction only]

Probab=99.96  E-value=5.4e-29  Score=207.67  Aligned_cols=164  Identities=23%  Similarity=0.282  Sum_probs=135.5

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~  169 (269)
                      -.|+++|+||+|||||+|+|+|. .++++|+.|.|||...   +...+.++.|+||||+..+..     ..-..|+....
T Consensus         7 GfVaIiGrPNvGKSTLlN~l~G~-KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~-----~l~~~m~~~a~   80 (298)
T COG1159           7 GFVAIIGRPNVGKSTLLNALVGQ-KISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKH-----ALGELMNKAAR   80 (298)
T ss_pred             EEEEEEcCCCCcHHHHHHHHhcC-ceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcch-----HHHHHHHHHHH
Confidence            36999999999999999999999 8999999999999963   344578899999999987632     22256777788


Q ss_pred             hcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchH-HHHHHHHHHHHHHhcCCCCCCeEEeeCC
Q 024325          170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID-VARRAMQIEESLKANNSLVQPVMMVSSK  248 (269)
Q Consensus       170 ~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~vi~vSa~  248 (269)
                      .++..+|+++||+|+..++...+..+++.+...+.|+++++||+|...+.. +....+.+...     ..+..++++||+
T Consensus        81 ~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~~~~~~-----~~f~~ivpiSA~  155 (298)
T COG1159          81 SALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIAFLKKL-----LPFKEIVPISAL  155 (298)
T ss_pred             HHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHHHHHHHHHHHhh-----CCcceEEEeecc
Confidence            888889999999999999999999999999887789999999999998766 33333333222     124589999999


Q ss_pred             CCCCHHHHHHHHHHhhhhh
Q 024325          249 SGAGIRSLRTVLSKIARFA  267 (269)
Q Consensus       249 ~g~gi~~L~~~i~~~~~~~  267 (269)
                      +|.|++.|.+.|...+...
T Consensus       156 ~g~n~~~L~~~i~~~Lpeg  174 (298)
T COG1159         156 KGDNVDTLLEIIKEYLPEG  174 (298)
T ss_pred             ccCCHHHHHHHHHHhCCCC
Confidence            9999999999999887643

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.96  E-value=5.8e-28  Score=219.42  Aligned_cols=229  Identities=28%  Similarity=0.322  Sum_probs=154.7

Q ss_pred             hhhhhhhhcCCCchhhHHHHHhcCCCcceeeeeccccccccCCCCCCCCCCChhhhhhhhhhhhchh--hh-HHHhhhcc
Q 024325            8 SKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNK--LE-FFAAAKVS   84 (269)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~--~~-~~~~~~~~   84 (269)
                      +..|+..++....+.+......|  +.+++...+ .+|+.+|||+|+.+..   +++.+..++....  ++ +.......
T Consensus       136 t~~~~~~al~~l~G~l~~~~~~~--r~~l~~~~a-~iea~iDf~ee~~~~~---~~~~i~~~i~~l~~~l~~l~~~~~~~  209 (449)
T PRK05291        136 TEAAARLALRQLQGALSKLINEL--REELLELLA-LVEAAIDFPEEDIEFL---SDEKILEKLEELIAELEALLASARQG  209 (449)
T ss_pred             CHHHHHHHHHhcCcHHHHHHHHH--HHHHHHHHH-HheEEccCCCCCcccc---cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556666777777777777777  556666666 7999999999875433   3444444442222  22 22222222


Q ss_pred             CCCCCCCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE---EeCCcEEEEcCCCCCCcchhHHHHHHH
Q 024325           85 SSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAW  161 (269)
Q Consensus        85 ~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~---~~~~~~~lvDtpG~~~~~~~~~~~~~~  161 (269)
                      +.+  ...++|+++|+||+|||||+|+|++. ..+.+++.+|+|+|....   ..+..+.+|||||+.++.  +.+... 
T Consensus       210 ~~~--~~~~kV~ivG~~nvGKSSLln~L~~~-~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~--~~ie~~-  283 (449)
T PRK05291        210 EIL--REGLKVVIAGRPNVGKSSLLNALLGE-ERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETD--DEVEKI-  283 (449)
T ss_pred             HHh--hcCCEEEEECCCCCCHHHHHHHHhCC-CCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCc--cHHHHH-
Confidence            222  23479999999999999999999998 557789999999987532   246789999999986532  111110 


Q ss_pred             HHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCC
Q 024325          162 EELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP  241 (269)
Q Consensus       162 ~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (269)
                        ...........+|++++|+|++.+....+..++..  ..+.|+++|+||+|+.+.....             .....+
T Consensus       284 --gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~~~~~~~-------------~~~~~~  346 (449)
T PRK05291        284 --GIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLTGEIDLE-------------EENGKP  346 (449)
T ss_pred             --HHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhccccchhh-------------hccCCc
Confidence              01111222344999999999987655554444433  3468999999999997643221             112467


Q ss_pred             eEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          242 VMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       242 vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      ++++||++|.|+++|+++|.+.+.
T Consensus       347 ~i~iSAktg~GI~~L~~~L~~~l~  370 (449)
T PRK05291        347 VIRISAKTGEGIDELREAIKELAF  370 (449)
T ss_pred             eEEEEeeCCCCHHHHHHHHHHHHh
Confidence            899999999999999999988764

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.96  E-value=2.4e-27  Score=190.73  Aligned_cols=170  Identities=41%  Similarity=0.644  Sum_probs=135.0

Q ss_pred             cCCCCCCCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHH
Q 024325           84 SSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEE  163 (269)
Q Consensus        84 ~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~  163 (269)
                      ..++|+...++|+++|.+|+|||||+|+|++......+++.+|+|.++.++..+..+.+|||||++...........|..
T Consensus        10 ~~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~   89 (179)
T TIGR03598        10 LKQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVNDGFRLVDLPGYGYAKVSKEEKEKWQK   89 (179)
T ss_pred             HhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCCcEEEEeCCCCccccCChhHHHHHHH
Confidence            34566677889999999999999999999997335667889999999887765668999999998765444444456667


Q ss_pred             HHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeE
Q 024325          164 LVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM  243 (269)
Q Consensus       164 ~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi  243 (269)
                      +...|+.....++++++|+|++.++...+..++..+...++|+++|+||+|+..+.+.......+++.+... ....+++
T Consensus        90 ~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~-~~~~~v~  168 (179)
T TIGR03598        90 LIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKD-ADDPSVQ  168 (179)
T ss_pred             HHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhc-cCCCceE
Confidence            777777766668999999999887887777888888888899999999999987766666666666666543 2235899


Q ss_pred             EeeCCCCCCHH
Q 024325          244 MVSSKSGAGIR  254 (269)
Q Consensus       244 ~vSa~~g~gi~  254 (269)
                      ++||++|+|++
T Consensus       169 ~~Sa~~g~gi~  179 (179)
T TIGR03598       169 LFSSLKKTGID  179 (179)
T ss_pred             EEECCCCCCCC
Confidence            99999999974

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.95  E-value=2.3e-28  Score=189.85  Aligned_cols=153  Identities=29%  Similarity=0.340  Sum_probs=110.2

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE---EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~---~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~  169 (269)
                      ++|+++|.||+|||||+|+|+|.+  ..++++||+|.+....   ..+..+.++||||+..-......    +.+...|+
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~--~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~e----e~v~~~~l   74 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAK--QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEE----ERVARDYL   74 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTS--EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHH----HHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC--ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcH----HHHHHHHH
Confidence            479999999999999999999994  7899999999997643   34678999999997653211111    12333443


Q ss_pred             hcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCC
Q 024325          170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS  249 (269)
Q Consensus       170 ~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~  249 (269)
                      . ....|++++|+|+.+  ...+..++.++.+.++|+++|+||+|.............+.+.+      +.|++++||++
T Consensus        75 ~-~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~L------g~pvi~~sa~~  145 (156)
T PF02421_consen   75 L-SEKPDLIIVVVDATN--LERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSERL------GVPVIPVSART  145 (156)
T ss_dssp             H-HTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHH------TS-EEEEBTTT
T ss_pred             h-hcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHHHh------CCCEEEEEeCC
Confidence            3 234999999999975  34556788888889999999999999876443322233444433      58999999999


Q ss_pred             CCCHHHHHHHH
Q 024325          250 GAGIRSLRTVL  260 (269)
Q Consensus       250 g~gi~~L~~~i  260 (269)
                      |+|+++|++.|
T Consensus       146 ~~g~~~L~~~I  156 (156)
T PF02421_consen  146 GEGIDELKDAI  156 (156)
T ss_dssp             TBTHHHHHHHH
T ss_pred             CcCHHHHHhhC
Confidence            99999999876

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.95  E-value=5.4e-26  Score=185.15  Aligned_cols=189  Identities=42%  Similarity=0.626  Sum_probs=145.1

Q ss_pred             hhHHHhhhccCCCCCCCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchh
Q 024325           75 LEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK  154 (269)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~  154 (269)
                      .+...+....+..+....++|+++|.+|+|||||+|+|++......+++.+|+|+++.+...+..+.+|||||+......
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~~~   86 (196)
T PRK00454          7 AEFVTSAPKLEQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAKVS   86 (196)
T ss_pred             HHHHHhhccHhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCcCCC
Confidence            34444444455555667899999999999999999999987335677888999999887776788999999998654333


Q ss_pred             HHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHh
Q 024325          155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA  234 (269)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~  234 (269)
                      ....+.+..+...|+.....++++++|+|+..+....+.++..++...+.|+++++||+|+.+..+.......+...+..
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~  166 (196)
T PRK00454         87 KEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKF  166 (196)
T ss_pred             chHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHh
Confidence            33445666777777777667788999999887666666667777777789999999999998766555544455554443


Q ss_pred             cCCCCCCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325          235 NNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       235 ~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      .   ..+++++||++|.|++++++.|.+.+..
T Consensus       167 ~---~~~~~~~Sa~~~~gi~~l~~~i~~~~~~  195 (196)
T PRK00454        167 G---DDEVILFSSLKKQGIDELRAAIAKWLAE  195 (196)
T ss_pred             c---CCceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence            2   4689999999999999999999887653

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.95  E-value=2.7e-27  Score=207.71  Aligned_cols=158  Identities=25%  Similarity=0.393  Sum_probs=126.4

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~  169 (269)
                      |.|+++|.||+|||||+|+|++. +.++|+++||+|+|..+..   .+..|.++||+|+.... .+.+   ...+..+..
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~-r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~-~~~l---~~~i~~Qa~   78 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGR-RIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGD-EDEL---QELIREQAL   78 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCC-eeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCC-chHH---HHHHHHHHH
Confidence            78999999999999999999999 8899999999999986543   37779999999996532 1122   234444555


Q ss_pred             hcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCC
Q 024325          170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS  249 (269)
Q Consensus       170 ~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~  249 (269)
                      .....+|+++||+|+..++++.|..+.++|...++|+++|+||+|-....+.      ..+.. .+  ..-.+++|||.+
T Consensus        79 ~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e~~------~~efy-sl--G~g~~~~ISA~H  149 (444)
T COG1160          79 IAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAEEL------AYEFY-SL--GFGEPVPISAEH  149 (444)
T ss_pred             HHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchhhhh------HHHHH-hc--CCCCceEeehhh
Confidence            5566699999999999999999999999999888999999999998733221      11111 11  134679999999


Q ss_pred             CCCHHHHHHHHHHhh
Q 024325          250 GAGIRSLRTVLSKIA  264 (269)
Q Consensus       250 g~gi~~L~~~i~~~~  264 (269)
                      |.|+++|++.+...+
T Consensus       150 g~Gi~dLld~v~~~l  164 (444)
T COG1160         150 GRGIGDLLDAVLELL  164 (444)
T ss_pred             ccCHHHHHHHHHhhc
Confidence            999999999999886

>TIGR00436 era GTP-binding protein Era

Probab=99.94  E-value=3.6e-26  Score=195.47  Aligned_cols=161  Identities=18%  Similarity=0.161  Sum_probs=118.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE---EEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHh
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~---~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~  170 (269)
                      .|+++|+||||||||+|+|++. ..+.+++.|+||++...   ...+..+.+|||||+.....  .   ....+...+..
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~-~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~--~---l~~~~~~~~~~   75 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQ-KISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKH--S---LNRLMMKEARS   75 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC-cEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcc--h---HHHHHHHHHHH
Confidence            5899999999999999999998 67889999999998532   22356799999999865421  1   11233444445


Q ss_pred             cccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCC
Q 024325          171 TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSG  250 (269)
Q Consensus       171 ~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g  250 (269)
                      ....+|++++|+|++..... +..++..+...+.|+++|+||+|+..+.........+..   ..  ...+++++||++|
T Consensus        76 ~l~~aDvvl~VvD~~~~~~~-~~~i~~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~---~~--~~~~v~~iSA~~g  149 (270)
T TIGR00436        76 AIGGVDLILFVVDSDQWNGD-GEFVLTKLQNLKRPVVLTRNKLDNKFKDKLLPLIDKYAI---LE--DFKDIVPISALTG  149 (270)
T ss_pred             HHhhCCEEEEEEECCCCCch-HHHHHHHHHhcCCCEEEEEECeeCCCHHHHHHHHHHHHh---hc--CCCceEEEecCCC
Confidence            55669999999999865333 356677777788999999999999865443332222221   11  1247999999999


Q ss_pred             CCHHHHHHHHHHhhhh
Q 024325          251 AGIRSLRTVLSKIARF  266 (269)
Q Consensus       251 ~gi~~L~~~i~~~~~~  266 (269)
                      .|+++|+++|.+.+..
T Consensus       150 ~gi~~L~~~l~~~l~~  165 (270)
T TIGR00436       150 DNTSFLAAFIEVHLPE  165 (270)
T ss_pred             CCHHHHHHHHHHhCCC
Confidence            9999999999987754

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.94  E-value=6.4e-26  Score=199.06  Aligned_cols=170  Identities=27%  Similarity=0.341  Sum_probs=132.2

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEEeCCcEEEEcCCCCCCcchh-HHHHHHHHHHHH
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAK-EEVKDAWEELVK  166 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~~~~~~~lvDtpG~~~~~~~-~~~~~~~~~~~~  166 (269)
                      ..++|+++|.||+|||||+|+|+++ ....+++.+|||+|..   +...+..+.++||+|+.....- +.++ .+ + ..
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilge-eR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E-~~-S-v~  252 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGE-ERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVE-KY-S-VA  252 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccC-ceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceE-EE-e-eh
Confidence            4689999999999999999999999 6689999999999974   4445888999999999653111 1000 00 0 01


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCc--hHHHHHHHHHHHHHHhcCCCCCCeEE
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP--IDVARRAMQIEESLKANNSLVQPVMM  244 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~vi~  244 (269)
                      ........++++++|+|+..++..+|..+...+...+.++++|+||||+.+.  ...+.....+...+...  ...|+++
T Consensus       253 rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l--~~a~i~~  330 (444)
T COG1160         253 RTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFL--DFAPIVF  330 (444)
T ss_pred             hhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccc--cCCeEEE
Confidence            1122233499999999999999999999999999999999999999999986  34444455555544432  3579999


Q ss_pred             eeCCCCCCHHHHHHHHHHhhhh
Q 024325          245 VSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       245 vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      +||++|.|++.|++.+......
T Consensus       331 iSA~~~~~i~~l~~~i~~~~~~  352 (444)
T COG1160         331 ISALTGQGLDKLFEAIKEIYEC  352 (444)
T ss_pred             EEecCCCChHHHHHHHHHHHHH
Confidence            9999999999999999887653

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.94  E-value=1.1e-25  Score=203.51  Aligned_cols=229  Identities=20%  Similarity=0.189  Sum_probs=151.4

Q ss_pred             hhhhhhhhcCCCchhhHHHHHhcCCCcceeeeeccccccccCCCCCCCCCCChhhhhhhhhhhhchhhhHHHhhhccCCC
Q 024325            8 SKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSF   87 (269)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   87 (269)
                      +..|+-.+++...+.+.....+|  +.+++.+.+ .+|+.+|||+|+.+.   .+.......+......++... ....+
T Consensus       128 t~~~~~~A~~~l~G~ls~~~~~~--r~~l~~~~a-~iea~iDf~ee~~~~---~~~~~~l~~~~~~l~~ll~~~-~~~~~  200 (442)
T TIGR00450       128 NNKVKDIALNKLAGELDQKIEAI--RKSLLQLLA-QVEVNIDYEEDDDEQ---DSLNQLLLSIIAELKDILNSY-KLEKL  200 (442)
T ss_pred             CHHHHHHHHHhcCcHHHHHHHHH--HHHHHHHHH-HeeEECCcCCCCccH---HHHHHHHHHHHHHHHHHHHHH-HHHHh
Confidence            44556667777888888888888  667788887 899999999876322   121111112222222233322 11111


Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE---EeCCcEEEEcCCCCCCcchhHHHHHHHHHH
Q 024325           88 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEEL  164 (269)
Q Consensus        88 ~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~---~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~  164 (269)
                        ...++|+++|+||+|||||+|+|++. ..++++++||||++....   ..+..+.+|||||+.+..  +.++. +  .
T Consensus       201 --~~g~kVvIvG~~nvGKSSLiN~L~~~-~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~--~~ie~-~--g  272 (442)
T TIGR00450       201 --DDGFKLAIVGSPNVGKSSLLNALLKQ-DRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHA--DFVER-L--G  272 (442)
T ss_pred             --hcCCEEEEECCCCCcHHHHHHHHhCC-CCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccch--hHHHH-H--H
Confidence              34579999999999999999999997 557899999999997533   236679999999986532  11111 0  0


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEE
Q 024325          165 VKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM  244 (269)
Q Consensus       165 ~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~  244 (269)
                      +.........+|++++|+|++.+.+..+. ++..+...++|+++|+||+|+... +.    ..+.+      ....+++.
T Consensus       273 i~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~~-~~----~~~~~------~~~~~~~~  340 (442)
T TIGR00450       273 IEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKIN-SL----EFFVS------SKVLNSSN  340 (442)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCCc-ch----hhhhh------hcCCceEE
Confidence            11222333459999999999876554444 555555567899999999999754 11    11111      12357899


Q ss_pred             eeCCCCCCHHHHHHHHHHhh
Q 024325          245 VSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       245 vSa~~g~gi~~L~~~i~~~~  264 (269)
                      +||++ .|++++++.|.+.+
T Consensus       341 vSak~-~gI~~~~~~L~~~i  359 (442)
T TIGR00450       341 LSAKQ-LKIKALVDLLTQKI  359 (442)
T ss_pred             EEEec-CCHHHHHHHHHHHH
Confidence            99998 58888887777655

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PRK04213 GTP-binding protein; Provisional

Probab=99.93  E-value=8.3e-24  Score=173.16  Aligned_cols=170  Identities=29%  Similarity=0.465  Sum_probs=116.3

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcch-hHHHHHHHHHHHHHHH
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYA-KEEVKDAWEELVKEYV  169 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~-~~~~~~~~~~~~~~~~  169 (269)
                      ..++|+++|.+|+|||||+|+|++..  ..++..||+|.+......+ .+.+|||||++.... .....+.+..+...|+
T Consensus         8 ~~~~i~i~G~~~~GKSsLin~l~~~~--~~~~~~~~~t~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   84 (201)
T PRK04213          8 RKPEIVFVGRSNVGKSTLVRELTGKK--VRVGKRPGVTRKPNHYDWG-DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYI   84 (201)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC--CccCCCCceeeCceEEeec-ceEEEeCCccccccccCHHHHHHHHHHHHHHH
Confidence            35799999999999999999999873  4577888999887665545 699999999754321 1111233344444444


Q ss_pred             h-cccccceEEEEEeCCCCCC-----------cchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHh---
Q 024325          170 S-TRVSLKRVCLLIDTKWGVK-----------PRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA---  234 (269)
Q Consensus       170 ~-~~~~~d~vl~vid~~~~~~-----------~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~---  234 (269)
                      . ....++++++|+|+.....           ..+.+++..+...++|+++|+||+|+....  ....+.+.+.+..   
T Consensus        85 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~  162 (201)
T PRK04213         85 EDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNR--DEVLDEIAERLGLYPP  162 (201)
T ss_pred             HhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcH--HHHHHHHHHHhcCCcc
Confidence            3 4556889999999864211           123456666666789999999999997653  1222333333221   


Q ss_pred             cCCCCCCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325          235 NNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       235 ~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      +.....+++++||++| |+++++++|.+.+..
T Consensus       163 ~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~  193 (201)
T PRK04213        163 WRQWQDIIAPISAKKG-GIEELKEAIRKRLHE  193 (201)
T ss_pred             ccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence            0011236899999999 999999999887654

>PRK00089 era GTPase Era; Reviewed

Probab=99.92  E-value=4.1e-24  Score=184.92  Aligned_cols=162  Identities=24%  Similarity=0.286  Sum_probs=122.2

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE--EE-eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FK-LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~--~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~  169 (269)
                      ..|+++|.||||||||+|+|++. ..+.+++.+.||++...  .. .+..+.++||||+.....  ...   ..+.....
T Consensus         6 g~V~iiG~pn~GKSTLin~L~g~-~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~--~l~---~~~~~~~~   79 (292)
T PRK00089          6 GFVAIVGRPNVGKSTLLNALVGQ-KISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKR--ALN---RAMNKAAW   79 (292)
T ss_pred             EEEEEECCCCCCHHHHHHHHhCC-ceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchh--HHH---HHHHHHHH
Confidence            46999999999999999999998 67889999999987642  22 346899999999866421  111   22333334


Q ss_pred             hcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCC-chHHHHHHHHHHHHHHhcCCCCCCeEEeeCC
Q 024325          170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF-PIDVARRAMQIEESLKANNSLVQPVMMVSSK  248 (269)
Q Consensus       170 ~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~  248 (269)
                      .....+|++++|+|++..+...+..+++.+...+.|+++|+||+|+.. ........+.+.+.     ....+++++||+
T Consensus        80 ~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~-----~~~~~i~~iSA~  154 (292)
T PRK00089         80 SSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEELSEL-----MDFAEIVPISAL  154 (292)
T ss_pred             HHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHHhh-----CCCCeEEEecCC
Confidence            445569999999999876777777888888777899999999999984 34444433333321     124679999999


Q ss_pred             CCCCHHHHHHHHHHhhh
Q 024325          249 SGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       249 ~g~gi~~L~~~i~~~~~  265 (269)
                      +|.|+++|+++|.+.+.
T Consensus       155 ~~~gv~~L~~~L~~~l~  171 (292)
T PRK00089        155 KGDNVDELLDVIAKYLP  171 (292)
T ss_pred             CCCCHHHHHHHHHHhCC
Confidence            99999999999998764

>PRK15494 era GTPase Era; Provisional

Probab=99.92  E-value=3.1e-24  Score=188.64  Aligned_cols=163  Identities=22%  Similarity=0.208  Sum_probs=120.1

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE---EEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~---~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      ..+|+++|.+|+|||||+|+|++. ..+.+++.++||++...   ...+..+.+|||||+......     ....+.+..
T Consensus        52 ~~kV~ivG~~nvGKSTLin~l~~~-k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~-----l~~~~~r~~  125 (339)
T PRK15494         52 TVSVCIIGRPNSGKSTLLNRIIGE-KLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGS-----LEKAMVRCA  125 (339)
T ss_pred             eeEEEEEcCCCCCHHHHHHHHhCC-ceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCccc-----HHHHHHHHH
Confidence            458999999999999999999998 66788899999987532   233678999999998643211     112333333


Q ss_pred             HhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCC
Q 024325          169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSK  248 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~  248 (269)
                      ......+|++++|+|+..++...+..+++.+...+.|.++|+||+|+... ...    .+.+.+... ....+++++||+
T Consensus       126 ~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~-~~~----~~~~~l~~~-~~~~~i~~iSAk  199 (339)
T PRK15494        126 WSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESK-YLN----DIKAFLTEN-HPDSLLFPISAL  199 (339)
T ss_pred             HHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccc-cHH----HHHHHHHhc-CCCcEEEEEecc
Confidence            34455699999999998777766667788777778888999999998653 222    222222221 123579999999


Q ss_pred             CCCCHHHHHHHHHHhhhh
Q 024325          249 SGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       249 ~g~gi~~L~~~i~~~~~~  266 (269)
                      +|.|+++|+++|...+..
T Consensus       200 tg~gv~eL~~~L~~~l~~  217 (339)
T PRK15494        200 SGKNIDGLLEYITSKAKI  217 (339)
T ss_pred             CccCHHHHHHHHHHhCCC
Confidence            999999999999987654

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.92  E-value=2.2e-23  Score=164.62  Aligned_cols=169  Identities=45%  Similarity=0.712  Sum_probs=131.7

Q ss_pred             EEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccc
Q 024325           95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVS  174 (269)
Q Consensus        95 v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (269)
                      |+++|.+|+|||||+|.|++.......++.+++|........+..+.++||||++.........+.+..+...|+.....
T Consensus         2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (170)
T cd01876           2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVNDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENREN   81 (170)
T ss_pred             EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccCeEEEecCCCccccccCHHHHHHHHHHHHHHHHhChh
Confidence            79999999999999999995434566778888888887776677899999999977644444445566666777777777


Q ss_pred             cceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHH
Q 024325          175 LKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIR  254 (269)
Q Consensus       175 ~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~  254 (269)
                      ++.+++++|..........+++.++...+.|+++|+||+|+..+.........+...+.. .....+++++||+++.|++
T Consensus        82 ~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~Sa~~~~~~~  160 (170)
T cd01876          82 LKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKL-FEIDPPIILFSSLKGQGID  160 (170)
T ss_pred             hhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHh-ccCCCceEEEecCCCCCHH
Confidence            899999999886666666778888888889999999999998766555444444444431 1235789999999999999


Q ss_pred             HHHHHHHHhh
Q 024325          255 SLRTVLSKIA  264 (269)
Q Consensus       255 ~L~~~i~~~~  264 (269)
                      +++++|.+.+
T Consensus       161 ~l~~~l~~~~  170 (170)
T cd01876         161 ELRALIEKWL  170 (170)
T ss_pred             HHHHHHHHhC
Confidence            9999998753

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd04171 SelB SelB subfamily

Probab=99.92  E-value=1.9e-23  Score=164.89  Aligned_cols=156  Identities=27%  Similarity=0.368  Sum_probs=106.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCc-CccccCCCCCceeEeeEEE---e-CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFK---L-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~-~~~~~s~~~gtt~~~~~~~---~-~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      .|+++|++|+|||||+|+|++.. ........+++|.+..+..   . +..+.+|||||..             .+...+
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~-------------~~~~~~   68 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHE-------------KFIKNM   68 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChH-------------HHHHHH
Confidence            68999999999999999999752 1111122456676654322   2 5679999999962             112223


Q ss_pred             HhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCC-cEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeC
Q 024325          169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT-KYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS  247 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~-p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa  247 (269)
                      ......+|++++|+|+..++.....+.+..+...+. |+++|+||+|+..........+.+.+.+........+++++||
T Consensus        69 ~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  148 (164)
T cd04171          69 LAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSA  148 (164)
T ss_pred             HhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeC
Confidence            333445999999999987555555555555555555 9999999999986543333334444444332113578999999


Q ss_pred             CCCCCHHHHHHHHHH
Q 024325          248 KSGAGIRSLRTVLSK  262 (269)
Q Consensus       248 ~~g~gi~~L~~~i~~  262 (269)
                      ++|+|++++++.|..
T Consensus       149 ~~~~~v~~l~~~l~~  163 (164)
T cd04171         149 VTGEGIEELKEYLDE  163 (164)
T ss_pred             CCCcCHHHHHHHHhh
Confidence            999999999998864

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.91  E-value=1.9e-23  Score=186.09  Aligned_cols=161  Identities=22%  Similarity=0.259  Sum_probs=113.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe---C-CcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---G-TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~---~-~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~  169 (269)
                      .|+|+|.||||||||+|+|++. . ..++++|+||+.......   + ..+.++||||+.+.....      ..+...++
T Consensus       161 dValVG~PNaGKSTLln~Lt~~-k-~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~------~~Lg~~~l  232 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAA-K-PKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEG------AGLGIRFL  232 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCC-c-ccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccch------hhHHHHHH
Confidence            8999999999999999999998 4 589999999998765432   2 359999999997643221      11223444


Q ss_pred             hcccccceEEEEEeCCCC----CCcchHHHHHHHHh-----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCC
Q 024325          170 STRVSLKRVCLLIDTKWG----VKPRDHELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ  240 (269)
Q Consensus       170 ~~~~~~d~vl~vid~~~~----~~~~~~~~~~~l~~-----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  240 (269)
                      +..+.+|++++|+|++..    .......+++.+..     ..+|+++|+||+|+....+.....+.+.+.+    ....
T Consensus       233 ~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~----~~~~  308 (390)
T PRK12298        233 KHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEAL----GWEG  308 (390)
T ss_pred             HHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHh----CCCC
Confidence            455669999999998621    11112345555544     2589999999999986554433333332221    1124


Q ss_pred             CeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325          241 PVMMVSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       241 ~vi~vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      +++++||+++.|+++|+++|.+.+..
T Consensus       309 ~Vi~ISA~tg~GIdeLl~~I~~~L~~  334 (390)
T PRK12298        309 PVYLISAASGLGVKELCWDLMTFIEE  334 (390)
T ss_pred             CEEEEECCCCcCHHHHHHHHHHHhhh
Confidence            78999999999999999999988754

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.91  E-value=4.1e-23  Score=188.18  Aligned_cols=170  Identities=25%  Similarity=0.274  Sum_probs=127.2

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE---EEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~---~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      ..++|+++|.+|+|||||+|+|++. ....+++.+|+|++...   ...+..+.+|||||+..........+.+.  ...
T Consensus       172 ~~~~v~ivG~~n~GKStlin~ll~~-~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~--~~~  248 (435)
T PRK00093        172 EPIKIAIIGRPNVGKSSLINALLGE-ERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYS--VIR  248 (435)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCC-CceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHH--HHH
Confidence            4689999999999999999999998 55778999999998742   23467799999999865422211111111  112


Q ss_pred             HHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeC
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS  247 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa  247 (269)
                      .......+|++++|+|+..+...++..++..+...+.|+++|+||+|+.+..........+...+..  ....|++++||
T Consensus       249 ~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~--~~~~~i~~~SA  326 (435)
T PRK00093        249 TLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVDEKTMEEFKKELRRRLPF--LDYAPIVFISA  326 (435)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCCHHHHHHHHHHHHHhccc--ccCCCEEEEeC
Confidence            2233445999999999999888888888888888889999999999998655444444444443322  12578999999


Q ss_pred             CCCCCHHHHHHHHHHhhh
Q 024325          248 KSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       248 ~~g~gi~~L~~~i~~~~~  265 (269)
                      ++|.|++++++.+.+.+.
T Consensus       327 ~~~~gv~~l~~~i~~~~~  344 (435)
T PRK00093        327 LTGQGVDKLLEAIDEAYE  344 (435)
T ss_pred             CCCCCHHHHHHHHHHHHH
Confidence            999999999999887654

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.91  E-value=3.4e-23  Score=188.39  Aligned_cols=170  Identities=24%  Similarity=0.273  Sum_probs=124.7

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE---EEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~---~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      ..++|+++|.+|+|||||+|+|++. ....+++.+|||++...   ...+..+.+|||||+..........+.+.  ...
T Consensus       171 ~~~~v~ivG~~~~GKSsLin~l~~~-~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~--~~~  247 (429)
T TIGR03594       171 GPIKIAIIGRPNVGKSTLVNALLGE-ERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYS--VLR  247 (429)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCC-CeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHH--HHH
Confidence            4578999999999999999999998 55678999999998642   23466899999999865322111111111  111


Q ss_pred             HHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCC-CchHHHHHHHHHHHHHHhcCCCCCCeEEee
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV-FPIDVARRAMQIEESLKANNSLVQPVMMVS  246 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~vi~vS  246 (269)
                      .......+|++++|+|+..+.+.++..++..+...+.|+++|+||+|+. +..........+...+...  ...|++++|
T Consensus       248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~vi~~S  325 (429)
T TIGR03594       248 TLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFL--DFAPIVFIS  325 (429)
T ss_pred             HHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccC--CCCceEEEe
Confidence            1223345999999999999888888888888888899999999999998 3333334444444333221  247899999


Q ss_pred             CCCCCCHHHHHHHHHHhhh
Q 024325          247 SKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       247 a~~g~gi~~L~~~i~~~~~  265 (269)
                      |++|.|+++++++|.+.+.
T Consensus       326 A~~g~~v~~l~~~i~~~~~  344 (429)
T TIGR03594       326 ALTGQGVDKLLDAIDEVYE  344 (429)
T ss_pred             CCCCCCHHHHHHHHHHHHH
Confidence            9999999999999988764

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd01894 EngA1 EngA1 subfamily

Probab=99.91  E-value=2.5e-23  Score=162.86  Aligned_cols=153  Identities=24%  Similarity=0.345  Sum_probs=112.6

Q ss_pred             EEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcc
Q 024325           96 AFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR  172 (269)
Q Consensus        96 ~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~  172 (269)
                      +++|.+|+|||||+|+|++. .....++.+++|++.....   .+..+.+|||||+.....  ...   ..+...+....
T Consensus         1 ~l~G~~~~GKssl~~~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~--~~~---~~~~~~~~~~~   74 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGR-RDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDE--GIS---KEIREQAELAI   74 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCC-cEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchh--HHH---HHHHHHHHHHH
Confidence            47899999999999999997 5566788888988765433   356799999999866421  111   11222222333


Q ss_pred             cccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCC
Q 024325          173 VSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAG  252 (269)
Q Consensus       173 ~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~g  252 (269)
                      ..+|++++|+|+..+....+..+..++...+.|+++|+||+|+......   ...    +...  ...+++++||++|.|
T Consensus        75 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~---~~~----~~~~--~~~~~~~~Sa~~~~g  145 (157)
T cd01894          75 EEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE---AAE----FYSL--GFGEPIPISAEHGRG  145 (157)
T ss_pred             HhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHH---HHH----HHhc--CCCCeEEEecccCCC
Confidence            4499999999998777777777888888788999999999999875433   111    1111  123789999999999


Q ss_pred             HHHHHHHHHHh
Q 024325          253 IRSLRTVLSKI  263 (269)
Q Consensus       253 i~~L~~~i~~~  263 (269)
                      +++++++|.+.
T Consensus       146 v~~l~~~l~~~  156 (157)
T cd01894         146 IGDLLDAILEL  156 (157)
T ss_pred             HHHHHHHHHhh
Confidence            99999999875

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.91  E-value=2.6e-24  Score=189.09  Aligned_cols=221  Identities=23%  Similarity=0.269  Sum_probs=138.5

Q ss_pred             CcceeeeeccccccccCCCCCCCCCCChhhhhhhhhhhhc---hhhhHHHhhhccCCCCCCCCcEEEEEcCCCCChHHHH
Q 024325           33 RRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFR---NKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSML  109 (269)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~ivG~~~~GKSsLi  109 (269)
                      +..+++..+ ..++.+||.++. +.... +-.++......   .....+........+  ...+.|+++|+||+|||||+
T Consensus       211 r~~lIe~~a-~l~a~idf~e~~-~l~~~-~t~~~~~~~~~l~d~v~s~l~~~~~~e~l--q~gl~iaIvGrPNvGKSSLl  285 (531)
T KOG1191|consen  211 RKILIEALA-GLEARIDFEEER-PLEEI-ETVEIFIESLSLLDDVLSHLNKADEIERL--QSGLQIAIVGRPNVGKSSLL  285 (531)
T ss_pred             HHHHHHHHh-ccceeechhhcC-chhhc-cchhhhhHHHHHHHHHHHHHHhhhhHHHh--hcCCeEEEEcCCCCCHHHHH
Confidence            556788888 788889996542 11110 00011111111   111111111111111  23479999999999999999


Q ss_pred             HHHhcCcCccccCCCCCceeEee---EEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCC
Q 024325          110 NALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW  186 (269)
Q Consensus       110 n~l~~~~~~~~~s~~~gtt~~~~---~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~  186 (269)
                      |+|.+. +.++|++.||||+|..   +...|.++.++||+|+.+. ..+.++.   .-++........+|++++|+|+..
T Consensus       286 NaL~~~-drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~-~~~~iE~---~gI~rA~k~~~~advi~~vvda~~  360 (531)
T KOG1191|consen  286 NALSRE-DRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREE-SNDGIEA---LGIERARKRIERADVILLVVDAEE  360 (531)
T ss_pred             HHHhcC-CceEeCCCCCcchhhheeEeecCCeEEEEEeccccccc-cCChhHH---HhHHHHHHHHhhcCEEEEEecccc
Confidence            999999 7899999999999974   4445889999999999872 1222211   112233334445999999999977


Q ss_pred             CCCcchHHHHHHHHhh------------CCcEEEEEecCCCCCch-HHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCH
Q 024325          187 GVKPRDHELISLMERS------------QTKYQVVLTKTDTVFPI-DVARRAMQIEESLKANNSLVQPVMMVSSKSGAGI  253 (269)
Q Consensus       187 ~~~~~~~~~~~~l~~~------------~~p~iiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi  253 (269)
                      .....+..+.+.+...            ..|++++.||+|+.++- +....-..+...  ........+..+||++++|+
T Consensus       361 ~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~--~~~~~~~i~~~vs~~tkeg~  438 (531)
T KOG1191|consen  361 SDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA--EGRSVFPIVVEVSCTTKEGC  438 (531)
T ss_pred             cccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccc--ccCcccceEEEeeechhhhH
Confidence            7777777766666542            36899999999998762 111100000000  11112334566999999999


Q ss_pred             HHHHHHHHHhhh
Q 024325          254 RSLRTVLSKIAR  265 (269)
Q Consensus       254 ~~L~~~i~~~~~  265 (269)
                      +.|.+.|...+.
T Consensus       439 ~~L~~all~~~~  450 (531)
T KOG1191|consen  439 ERLSTALLNIVE  450 (531)
T ss_pred             HHHHHHHHHHHH
Confidence            999999877654

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.91  E-value=3.2e-23  Score=190.12  Aligned_cols=171  Identities=20%  Similarity=0.202  Sum_probs=122.6

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE---EEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~---~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      ..++|+++|.+|+|||||+|+|++. ....+++.+|||++...   ...+..+.+|||||+........-.+.+..+.. 
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~-~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~-  287 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGE-ERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRT-  287 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCC-CcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHH-
Confidence            4589999999999999999999998 45678999999998642   234667899999998543111100111111110 


Q ss_pred             HHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeC
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS  247 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa  247 (269)
                       ......+|++++|+|++.+...++..++..+...++|+++|+||+|+..+.........+.+.+..  ....|++++||
T Consensus       288 -~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~--~~~~~~~~~SA  364 (472)
T PRK03003        288 -HAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVDEDRRYYLEREIDRELAQ--VPWAPRVNISA  364 (472)
T ss_pred             -HHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChhHHHHHHHHHHHhccc--CCCCCEEEEEC
Confidence             112234999999999998888888888888877889999999999998643322222233322221  12468999999


Q ss_pred             CCCCCHHHHHHHHHHhhhh
Q 024325          248 KSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       248 ~~g~gi~~L~~~i~~~~~~  266 (269)
                      ++|.|++++++.|.+.++.
T Consensus       365 k~g~gv~~lf~~i~~~~~~  383 (472)
T PRK03003        365 KTGRAVDKLVPALETALES  383 (472)
T ss_pred             CCCCCHHHHHHHHHHHHHH
Confidence            9999999999999887754

>cd01889 SelB_euk SelB subfamily

Probab=99.91  E-value=3.4e-23  Score=168.42  Aligned_cols=160  Identities=23%  Similarity=0.333  Sum_probs=111.6

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCc-----CccccCCCCCceeEeeEE---Ee--------------CCcEEEEcCCCCCC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKPGLTQTINFF---KL--------------GTKLCLVDLPGYGF  150 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~-----~~~~~s~~~gtt~~~~~~---~~--------------~~~~~lvDtpG~~~  150 (269)
                      .+|+++|++|+|||||+++|++..     .....+..+|+|.+..+.   ..              +..+.+|||||+. 
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~-   79 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA-   79 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH-
Confidence            379999999999999999999731     112233355677665421   11              5679999999972 


Q ss_pred             cchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHH
Q 024325          151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE  230 (269)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~  230 (269)
                                  .+...+......+|.+++|+|+..+....+.+.+......+.|+++|+||+|+..........+.+.+
T Consensus        80 ------------~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~  147 (192)
T cd01889          80 ------------SLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMKK  147 (192)
T ss_pred             ------------HHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHH
Confidence                        23344445555589999999998766655555555555567899999999999865444333333433


Q ss_pred             HHH----hcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          231 SLK----ANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       231 ~~~----~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      .+.    .......+++++||++|+|+++|+++|.+.+.
T Consensus       148 ~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~  186 (192)
T cd01889         148 KLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIV  186 (192)
T ss_pred             HHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence            222    11223578999999999999999999988754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.91  E-value=4e-23  Score=180.63  Aligned_cols=163  Identities=21%  Similarity=0.263  Sum_probs=115.4

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE----eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~----~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      ...|+++|.||||||||+|+|++. . ..++++|+||.+.+...    .+..+.++||||+.+.....      ..+...
T Consensus       158 ~adVglVG~PNaGKSTLln~ls~a-~-~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~------~gLg~~  229 (335)
T PRK12299        158 LADVGLVGLPNAGKSTLISAVSAA-K-PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEG------AGLGHR  229 (335)
T ss_pred             cCCEEEEcCCCCCHHHHHHHHHcC-C-CccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCcc------ccHHHH
Confidence            357999999999999999999987 3 56899999999876432    24579999999997643221      123345


Q ss_pred             HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh-----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCC
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP  241 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~-----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (269)
                      |++..+.++++++|+|++......+ ..+.+.+..     .++|+++|+||+|+.+.......  .+......   ...+
T Consensus       230 flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~--~~~~~~~~---~~~~  304 (335)
T PRK12299        230 FLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREK--RAALELAA---LGGP  304 (335)
T ss_pred             HHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHH--HHHHHHHh---cCCC
Confidence            5555666999999999885332222 234444443     26899999999999865433211  11111111   2468


Q ss_pred             eEEeeCCCCCCHHHHHHHHHHhhhhh
Q 024325          242 VMMVSSKSGAGIRSLRTVLSKIARFA  267 (269)
Q Consensus       242 vi~vSa~~g~gi~~L~~~i~~~~~~~  267 (269)
                      ++++||++++|+++|+++|.+.+...
T Consensus       305 i~~iSAktg~GI~eL~~~L~~~l~~~  330 (335)
T PRK12299        305 VFLISAVTGEGLDELLRALWELLEEA  330 (335)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHhh
Confidence            99999999999999999999887654

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.91  E-value=5.6e-23  Score=163.18  Aligned_cols=159  Identities=23%  Similarity=0.218  Sum_probs=106.1

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~  169 (269)
                      |+|+++|.+|+|||||+|+|++..  ..+++++++|.+.....   .+..+.+|||||+.+....+.  ..+........
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~--~~~~~~~~~~~   76 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAK--PEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEER--NTIEMQAITAL   76 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCC--CccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCC--chHHHHHHHHH
Confidence            589999999999999999999973  34567788887775433   246899999999853211110  00100000111


Q ss_pred             hcccccceEEEEEeCCCCCCc---chHHHHHHHHhh--CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEE
Q 024325          170 STRVSLKRVCLLIDTKWGVKP---RDHELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM  244 (269)
Q Consensus       170 ~~~~~~d~vl~vid~~~~~~~---~~~~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~  244 (269)
                      .  ...|++++|+|++.....   ....++..+...  +.|+++|+||+|+........    ..+...   ....++++
T Consensus        77 ~--~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~----~~~~~~---~~~~~~~~  147 (168)
T cd01897          77 A--HLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSE----IEEEEE---LEGEEVLK  147 (168)
T ss_pred             H--hccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHH----HHHhhh---hccCceEE
Confidence            1  125889999999754321   123455566554  789999999999986544332    111111   12468999


Q ss_pred             eeCCCCCCHHHHHHHHHHhh
Q 024325          245 VSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       245 vSa~~g~gi~~L~~~i~~~~  264 (269)
                      +||++|.|+++++++|.+.+
T Consensus       148 ~Sa~~~~gi~~l~~~l~~~~  167 (168)
T cd01897         148 ISTLTEEGVDEVKNKACELL  167 (168)
T ss_pred             EEecccCCHHHHHHHHHHHh
Confidence            99999999999999998764

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd01895 EngA2 EngA2 subfamily

Probab=99.91  E-value=1.2e-22  Score=161.39  Aligned_cols=167  Identities=26%  Similarity=0.296  Sum_probs=117.4

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      .++|+++|.+|+|||||+|+|++. .....++.+++|.+..   +...+..+.+|||||+..........+.+..  ...
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~--~~~   78 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGE-ERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSV--LRT   78 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCc-cceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHH--HHH
Confidence            468999999999999999999997 4455677788877763   2234567899999998654211111111110  111


Q ss_pred             HhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCc--hHHHHHHHHHHHHHHhcCCCCCCeEEee
Q 024325          169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP--IDVARRAMQIEESLKANNSLVQPVMMVS  246 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~vi~vS  246 (269)
                      ......+|++++|+|+..+.......++..+...+.|+++|+||+|+...  .......+.+.+.+...  ...+++++|
T Consensus        79 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~S  156 (174)
T cd01895          79 LKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFL--DYAPIVFIS  156 (174)
T ss_pred             HHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccc--cCCceEEEe
Confidence            22334589999999998777766667777777678999999999999876  33444444444433211  246899999


Q ss_pred             CCCCCCHHHHHHHHHHh
Q 024325          247 SKSGAGIRSLRTVLSKI  263 (269)
Q Consensus       247 a~~g~gi~~L~~~i~~~  263 (269)
                      |++++|++++++.+.+.
T Consensus       157 a~~~~~i~~~~~~l~~~  173 (174)
T cd01895         157 ALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             ccCCCCHHHHHHHHHHh
Confidence            99999999999998765

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd01878 HflX HflX subfamily

Probab=99.90  E-value=1.1e-22  Score=166.95  Aligned_cols=157  Identities=19%  Similarity=0.255  Sum_probs=104.8

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE---eC-CcEEEEcCCCCCCcchhHHHHHHHHHHH
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LG-TKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~---~~-~~~~lvDtpG~~~~~~~~~~~~~~~~~~  165 (269)
                      .+.++|+++|++|||||||+|++++..  ..+.+.+++|.+.....   .+ ..+.+|||||+....... ....+....
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-~~~~~~~~~  115 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGAD--VYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQ-LVEAFRSTL  115 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcch--hccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHH-HHHHHHHHH
Confidence            556899999999999999999999973  34555556665543221   13 379999999985432221 111222221


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcchH-HHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCC
Q 024325          166 KEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP  241 (269)
Q Consensus       166 ~~~~~~~~~~d~vl~vid~~~~~~~~~~-~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (269)
                          .....+|++++|+|++.+....+. .+.+.+..   .++|+++|+||+|+.......       ...   .....+
T Consensus       116 ----~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~-------~~~---~~~~~~  181 (204)
T cd01878         116 ----EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE-------ERL---EAGRPD  181 (204)
T ss_pred             ----HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH-------HHh---hcCCCc
Confidence                123348999999999865443332 23333333   368999999999998654332       111   123568


Q ss_pred             eEEeeCCCCCCHHHHHHHHHHh
Q 024325          242 VMMVSSKSGAGIRSLRTVLSKI  263 (269)
Q Consensus       242 vi~vSa~~g~gi~~L~~~i~~~  263 (269)
                      ++++||++|.|+++++++|...
T Consensus       182 ~~~~Sa~~~~gi~~l~~~L~~~  203 (204)
T cd01878         182 AVFISAKTGEGLDELLEAIEEL  203 (204)
T ss_pred             eEEEEcCCCCCHHHHHHHHHhh
Confidence            9999999999999999999765

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.90  E-value=5.7e-23  Score=184.01  Aligned_cols=156  Identities=18%  Similarity=0.217  Sum_probs=112.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe----CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~----~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~  169 (269)
                      .|+++|.||||||||||+|++..  ..++++|+||...++...    +..+.++||||+.+....      +..+...|+
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak--~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~------~~gLg~~fL  231 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAK--PKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASE------GVGLGHQFL  231 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCC--CccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccc------cchHHHHHH
Confidence            89999999999999999999983  457899999999875433    568999999999754221      123445566


Q ss_pred             hcccccceEEEEEeCCCCC--Cc--chHHHHHHHHh-----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCC
Q 024325          170 STRVSLKRVCLLIDTKWGV--KP--RDHELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ  240 (269)
Q Consensus       170 ~~~~~~d~vl~vid~~~~~--~~--~~~~~~~~l~~-----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  240 (269)
                      +..+.++++++|+|++...  .+  ....+.+.+..     .++|+++|+||+|+....+   ..+.+.+.+      ..
T Consensus       232 rhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e---~l~~l~~~l------~~  302 (424)
T PRK12297        232 RHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEE---NLEEFKEKL------GP  302 (424)
T ss_pred             HHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHH---HHHHHHHHh------CC
Confidence            6666699999999987421  11  12334445543     3689999999999853321   122222221      25


Q ss_pred             CeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325          241 PVMMVSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       241 ~vi~vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      +++++||++++|+++|+++|.+.+..
T Consensus       303 ~i~~iSA~tgeGI~eL~~~L~~~l~~  328 (424)
T PRK12297        303 KVFPISALTGQGLDELLYAVAELLEE  328 (424)
T ss_pred             cEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            79999999999999999999887754

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.90  E-value=1.3e-22  Score=164.56  Aligned_cols=160  Identities=26%  Similarity=0.441  Sum_probs=117.3

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCcc----------------ccCCCCCceeEe---eEE--EeCCcEEEEcCCCCCC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVV----------------RTSDKPGLTQTI---NFF--KLGTKLCLVDLPGYGF  150 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~----------------~~s~~~gtt~~~---~~~--~~~~~~~lvDtpG~~~  150 (269)
                      .++|+++|+.++|||||+++|++.....                ......+.|.+.   .+.  ..+..+.++||||+  
T Consensus         3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~--   80 (188)
T PF00009_consen    3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGH--   80 (188)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSS--
T ss_pred             EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccc--
Confidence            4689999999999999999998652110                000112333332   333  44678999999997  


Q ss_pred             cchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHH
Q 024325          151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE  230 (269)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~  230 (269)
                                 ..+..........+|++++|+|+..+...+..+++..+...++|+++|+||+|+. ..+..+....+..
T Consensus        81 -----------~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~-~~~~~~~~~~~~~  148 (188)
T PF00009_consen   81 -----------EDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLI-EKELEEIIEEIKE  148 (188)
T ss_dssp             -----------HHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSS-HHHHHHHHHHHHH
T ss_pred             -----------cceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccch-hhhHHHHHHHHHH
Confidence                       2344455555667999999999999999999999999999999999999999999 4445555555553


Q ss_pred             HH-HhcCC---CCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          231 SL-KANNS---LVQPVMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       231 ~~-~~~~~---~~~~vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      .+ .....   ...|++++||++|.|+++|++.|.+.++
T Consensus       149 ~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  149 KLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             HHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             HhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence            33 33322   1468999999999999999999998764

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>cd04163 Era Era subfamily

Probab=99.90  E-value=2.2e-22  Score=158.46  Aligned_cols=160  Identities=26%  Similarity=0.286  Sum_probs=114.3

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~  169 (269)
                      .+|+++|.+|+|||||+|+|++. ..+.+++.+.+++......   .+..+.+|||||+........  +.   +.....
T Consensus         4 ~~i~~~G~~g~GKttl~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~--~~---~~~~~~   77 (168)
T cd04163           4 GFVAIVGRPNVGKSTLLNALVGQ-KISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLG--ER---MVKAAW   77 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC-ceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHH--HH---HHHHHH
Confidence            57999999999999999999998 5666777777776653322   245789999999876432211  11   112222


Q ss_pred             hcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCC-chHHHHHHHHHHHHHHhcCCCCCCeEEeeCC
Q 024325          170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF-PIDVARRAMQIEESLKANNSLVQPVMMVSSK  248 (269)
Q Consensus       170 ~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~  248 (269)
                      .....+|.+++|+|+.......+..+...+...+.|+++|+||+|+.. +.........+...     ....+++++|++
T Consensus        78 ~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~  152 (168)
T cd04163          78 SALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDKEDLLPLLEKLKEL-----GPFAEIFPISAL  152 (168)
T ss_pred             HHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccccHHHHHHHHHHHHhc-----cCCCceEEEEec
Confidence            333458999999999876566666777777777899999999999984 33333333333221     114689999999


Q ss_pred             CCCCHHHHHHHHHHh
Q 024325          249 SGAGIRSLRTVLSKI  263 (269)
Q Consensus       249 ~g~gi~~L~~~i~~~  263 (269)
                      ++.|+++++++|.+.
T Consensus       153 ~~~~~~~l~~~l~~~  167 (168)
T cd04163         153 KGENVDELLEEIVKY  167 (168)
T ss_pred             cCCChHHHHHHHHhh
Confidence            999999999999875

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd01898 Obg Obg subfamily

Probab=99.90  E-value=4.7e-23  Score=163.82  Aligned_cols=157  Identities=21%  Similarity=0.241  Sum_probs=105.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE---EeCC-cEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGT-KLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~---~~~~-~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~  169 (269)
                      .|+++|.+|||||||+|+|.+..  ..++..+++|.+....   ..+. .+.+|||||+.......      ..+...++
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~--~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~------~~~~~~~~   73 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAK--PKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEG------KGLGHRFL   73 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCC--ccccCCCccccCCcceEEEcCCCCeEEEEecCcccCccccc------CCchHHHH
Confidence            58999999999999999999873  3677778887765322   2244 79999999985421111      11222333


Q ss_pred             hcccccceEEEEEeCCCC-CCcch-HHHHHHHHh-----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325          170 STRVSLKRVCLLIDTKWG-VKPRD-HELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  242 (269)
Q Consensus       170 ~~~~~~d~vl~vid~~~~-~~~~~-~~~~~~l~~-----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  242 (269)
                      +....+|++++|+|++.. ..... ..+.+.+..     .++|+++|+||+|+.+..........   .....  ...++
T Consensus        74 ~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~---~~~~~--~~~~~  148 (170)
T cd01898          74 RHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKE---LLKEL--WGKPV  148 (170)
T ss_pred             HHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHH---HHhhC--CCCCE
Confidence            334459999999999854 12111 234444433     25899999999999876554332222   22211  24679


Q ss_pred             EEeeCCCCCCHHHHHHHHHHh
Q 024325          243 MMVSSKSGAGIRSLRTVLSKI  263 (269)
Q Consensus       243 i~vSa~~g~gi~~L~~~i~~~  263 (269)
                      +++||++|.|+++++++|.+.
T Consensus       149 ~~~Sa~~~~gi~~l~~~i~~~  169 (170)
T cd01898         149 FPISALTGEGLDELLRKLAEL  169 (170)
T ss_pred             EEEecCCCCCHHHHHHHHHhh
Confidence            999999999999999999765

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.90  E-value=2e-22  Score=159.78  Aligned_cols=157  Identities=22%  Similarity=0.298  Sum_probs=107.5

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE------eCCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK------LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~------~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      |.|+++|.+|+|||||+|+|++. .. .....+++|.+.....      .+..+.+|||||...          +..+..
T Consensus         1 ~~i~iiG~~~~GKtsli~~l~~~-~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~----------~~~~~~   68 (168)
T cd01887           1 PVVTVMGHVDHGKTTLLDKIRKT-NV-AAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEA----------FTNMRA   68 (168)
T ss_pred             CEEEEEecCCCCHHHHHHHHHhc-cc-ccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHH----------HHHHHH
Confidence            57999999999999999999987 32 2334456776654222      145799999999632          111112


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHh---cCCCCCCeE
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA---NNSLVQPVM  243 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~~vi  243 (269)
                      .+   ...+|++++|+|++.+........+..+...++|+++|+||+|+.... .......+......   ......+++
T Consensus        69 ~~---~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (168)
T cd01887          69 RG---ASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNAN-PERVKNELSELGLQGEDEWGGDVQIV  144 (168)
T ss_pred             HH---HhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceeccccc-HHHHHHHHHHhhccccccccCcCcEE
Confidence            22   234999999999987665555666777777889999999999987532 11222222211111   112246899


Q ss_pred             EeeCCCCCCHHHHHHHHHHhhh
Q 024325          244 MVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       244 ~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      ++||++|+|+++|+++|.+...
T Consensus       145 ~~Sa~~~~gi~~l~~~l~~~~~  166 (168)
T cd01887         145 PTSAKTGEGIDDLLEAILLLAE  166 (168)
T ss_pred             EeecccCCCHHHHHHHHHHhhh
Confidence            9999999999999999987654

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.90  E-value=8.1e-23  Score=178.53  Aligned_cols=159  Identities=21%  Similarity=0.280  Sum_probs=111.7

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe---C-CcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---G-TKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~---~-~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      ...|+++|.||||||||+|+|++..  ..++++|+||...+....   + ..+.++||||+.+.....      ..+...
T Consensus       157 ~adV~lvG~pnaGKSTLl~~lt~~~--~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~------~gLg~~  228 (329)
T TIGR02729       157 LADVGLVGLPNAGKSTLISAVSAAK--PKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEG------AGLGHR  228 (329)
T ss_pred             cccEEEEcCCCCCHHHHHHHHhcCC--ccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCccc------ccHHHH
Confidence            3579999999999999999999873  568999999988654332   3 679999999996542211      123334


Q ss_pred             HHhcccccceEEEEEeCCCCC---Ccch-HHHHHHHHh-----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCC
Q 024325          168 YVSTRVSLKRVCLLIDTKWGV---KPRD-HELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSL  238 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~---~~~~-~~~~~~l~~-----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  238 (269)
                      |++..+.++++++|+|++..-   ...+ ..+.+.+..     ..+|+++|+||+|+..+.......+.+.+.      .
T Consensus       229 flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~------~  302 (329)
T TIGR02729       229 FLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKA------L  302 (329)
T ss_pred             HHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHH------c
Confidence            445555699999999987531   1111 223333432     368999999999998764443333333221      1


Q ss_pred             CCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325          239 VQPVMMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       239 ~~~vi~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      ..+++++||++++|+++|+++|.+.+
T Consensus       303 ~~~vi~iSAktg~GI~eL~~~I~~~l  328 (329)
T TIGR02729       303 GKPVFPISALTGEGLDELLYALAELL  328 (329)
T ss_pred             CCcEEEEEccCCcCHHHHHHHHHHHh
Confidence            36899999999999999999998765

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.90  E-value=1.8e-22  Score=185.15  Aligned_cols=160  Identities=21%  Similarity=0.266  Sum_probs=117.3

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      +.|+|+++|.+|+|||||+|+|++. ..+.+++.||+|++.....   .+..+.+|||||+....  ..+...+..   .
T Consensus        37 ~~~~V~IvG~~nvGKSSL~nrl~~~-~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~--~~~~~~~~~---~  110 (472)
T PRK03003         37 PLPVVAVVGRPNVGKSTLVNRILGR-REAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDA--KGLQASVAE---Q  110 (472)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCc-CcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcc--hhHHHHHHH---H
Confidence            3579999999999999999999997 5577899999999876543   36679999999985321  111111222   2


Q ss_pred             HHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeC
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS  247 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa  247 (269)
                      .......+|++++|+|++.+.+..+..+..++...++|+++|+||+|+......      ..+.. .. ... ..++|||
T Consensus       111 ~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~~------~~~~~-~~-g~~-~~~~iSA  181 (472)
T PRK03003        111 AEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEAD------AAALW-SL-GLG-EPHPVSA  181 (472)
T ss_pred             HHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccchh------hHHHH-hc-CCC-CeEEEEc
Confidence            222233499999999999887777788888888889999999999998643211      11111 11 122 3479999


Q ss_pred             CCCCCHHHHHHHHHHhhh
Q 024325          248 KSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       248 ~~g~gi~~L~~~i~~~~~  265 (269)
                      ++|.|+++|+++|...+.
T Consensus       182 ~~g~gi~eL~~~i~~~l~  199 (472)
T PRK03003        182 LHGRGVGDLLDAVLAALP  199 (472)
T ss_pred             CCCCCcHHHHHHHHhhcc
Confidence            999999999999987764

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.90  E-value=1.3e-22  Score=183.95  Aligned_cols=162  Identities=23%  Similarity=0.238  Sum_probs=112.8

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      ...|+|+|.||||||||+|+|++..  ..++++|+||.+.+...   .+..+.++||||+.+.....      ..+...+
T Consensus       159 ~adV~LVG~PNAGKSTLln~Ls~ak--pkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g------~gLg~~f  230 (500)
T PRK12296        159 VADVGLVGFPSAGKSSLISALSAAK--PKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEG------KGLGLDF  230 (500)
T ss_pred             cceEEEEEcCCCCHHHHHHHHhcCC--ccccccCcccccceEEEEEECCeEEEEEECCCCccccchh------hHHHHHH
Confidence            3589999999999999999999973  46799999999875443   35679999999997542211      1233345


Q ss_pred             HhcccccceEEEEEeCCCCC----CcchH-HHHHHHH--------------hhCCcEEEEEecCCCCCchHHHHHHHHHH
Q 024325          169 VSTRVSLKRVCLLIDTKWGV----KPRDH-ELISLME--------------RSQTKYQVVLTKTDTVFPIDVARRAMQIE  229 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~~~----~~~~~-~~~~~l~--------------~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~  229 (269)
                      ++....+|++++|+|++...    ...+. .+...|.              ...+|+++|+||+|+.+..+...   .+.
T Consensus       231 LrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e---~l~  307 (500)
T PRK12296        231 LRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAE---FVR  307 (500)
T ss_pred             HHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHH---HHH
Confidence            55556699999999997421    11111 1222221              23689999999999975543322   222


Q ss_pred             HHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhhhh
Q 024325          230 ESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFA  267 (269)
Q Consensus       230 ~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~~~  267 (269)
                      ..+..   ...++++|||++++|+++|+.+|.+.+...
T Consensus       308 ~~l~~---~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~  342 (500)
T PRK12296        308 PELEA---RGWPVFEVSAASREGLRELSFALAELVEEA  342 (500)
T ss_pred             HHHHH---cCCeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence            22222   246899999999999999999999887543

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.90  E-value=2.4e-22  Score=192.40  Aligned_cols=172  Identities=20%  Similarity=0.193  Sum_probs=124.2

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      ...++|+++|.+|+|||||+|+|++. ....+++.+|||++..   +...+..+.+|||||+........-.+.+..+  
T Consensus       448 ~~~~kI~ivG~~nvGKSSLin~l~~~-~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~--  524 (712)
T PRK09518        448 SGLRRVALVGRPNVGKSSLLNQLTHE-ERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSL--  524 (712)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCc-cccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHH--
Confidence            34689999999999999999999998 5567899999999874   23346789999999985432111101111111  


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEee
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS  246 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vS  246 (269)
                      ........+|++++|+|++.+.+.++..++..+...++|+++|+||+|+.+..........+...+.  .....+++++|
T Consensus       525 r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~--~~~~~~ii~iS  602 (712)
T PRK09518        525 RTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMDEFRRQRLERLWKTEFD--RVTWARRVNLS  602 (712)
T ss_pred             HHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCChhHHHHHHHHHHHhcc--CCCCCCEEEEE
Confidence            1122334599999999999888888888888777788999999999999865433322222332221  11246889999


Q ss_pred             CCCCCCHHHHHHHHHHhhhh
Q 024325          247 SKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       247 a~~g~gi~~L~~~i~~~~~~  266 (269)
                      |++|.|+++|++.+.+.+..
T Consensus       603 Aktg~gv~~L~~~i~~~~~~  622 (712)
T PRK09518        603 AKTGWHTNRLAPAMQEALES  622 (712)
T ss_pred             CCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999887754

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.90  E-value=3e-22  Score=156.64  Aligned_cols=152  Identities=26%  Similarity=0.352  Sum_probs=110.6

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~  169 (269)
                      .+|+++|++|+|||||+|++++. ....+++.+++|.+.....   .+..+.+|||||+.+....  ...   .......
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~--~~~---~~~~~~~   75 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGR-DRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDE--IEK---IGIERAR   75 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCC-ceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcch--HHH---HHHHHHH
Confidence            47999999999999999999998 5567788899998865322   3567999999998664221  110   0111122


Q ss_pred             hcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCC
Q 024325          170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS  249 (269)
Q Consensus       170 ~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~  249 (269)
                      .....+|++++|+|+.......+...+..  ..+.|+++|+||+|+.+....            .......+++++||++
T Consensus        76 ~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~~~~------------~~~~~~~~~~~~Sa~~  141 (157)
T cd04164          76 EAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLPDSEL------------LSLLAGKPIIAISAKT  141 (157)
T ss_pred             HHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCcccc------------ccccCCCceEEEECCC
Confidence            22335999999999987555555544443  457999999999999865433            1112357899999999


Q ss_pred             CCCHHHHHHHHHHhh
Q 024325          250 GAGIRSLRTVLSKIA  264 (269)
Q Consensus       250 g~gi~~L~~~i~~~~  264 (269)
                      +.|+++|+++|.+.+
T Consensus       142 ~~~v~~l~~~l~~~~  156 (157)
T cd04164         142 GEGLDELKEALLELA  156 (157)
T ss_pred             CCCHHHHHHHHHHhh
Confidence            999999999998764

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.89  E-value=3.3e-22  Score=161.37  Aligned_cols=158  Identities=20%  Similarity=0.219  Sum_probs=111.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccC---------------CCCCceeEeeEE---EeCCcEEEEcCCCCCCcchhH
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTS---------------DKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKE  155 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s---------------~~~gtt~~~~~~---~~~~~~~lvDtpG~~~~~~~~  155 (269)
                      +|+++|.+|+|||||+|+|++.. .....               ...++|.+....   ..+..+.+|||||+...    
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~----   75 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVT-GDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDF----   75 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhc-CCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHH----
Confidence            48999999999999999999873 22111               122344443222   22567899999997321    


Q ss_pred             HHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhc
Q 024325          156 EVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN  235 (269)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~  235 (269)
                            ......+   ...+|++++|+|+.++......+++..+...+.|+++|+||+|+..+.+.......+.+.+...
T Consensus        76 ------~~~~~~~---~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~  146 (189)
T cd00881          76 ------SSEVIRG---LSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLI  146 (189)
T ss_pred             ------HHHHHHH---HHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHHccc
Confidence                  1111222   2249999999999887766667777777777899999999999997555555555555554432


Q ss_pred             C-----------CCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          236 N-----------SLVQPVMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       236 ~-----------~~~~~vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      .           ....+++++||++|.|+++++++|...+.
T Consensus       147 ~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~  187 (189)
T cd00881         147 GFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP  187 (189)
T ss_pred             cccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence            2           23578999999999999999999988763

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.89  E-value=3.1e-22  Score=182.12  Aligned_cols=157  Identities=24%  Similarity=0.328  Sum_probs=119.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHh
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~  170 (269)
                      +|+++|.+|+|||||+|+|++. ..+.+++.+|+|++.....   .+..+.+|||||+...  .+.+.   ..+......
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~-~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~--~~~~~---~~~~~~~~~   74 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGK-RDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEED--DDGLD---KQIREQAEI   74 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCc--chhHH---HHHHHHHHH
Confidence            3899999999999999999998 5678999999999875443   4678999999998542  12222   222233333


Q ss_pred             cccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCC
Q 024325          171 TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSG  250 (269)
Q Consensus       171 ~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g  250 (269)
                      ....+|++++|+|+..+....+..+.+++...++|+++|+||+|+.......   .   + +...  ...+++++||++|
T Consensus        75 ~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~~~---~---~-~~~l--g~~~~~~vSa~~g  145 (429)
T TIGR03594        75 AIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAVA---A---E-FYSL--GFGEPIPISAEHG  145 (429)
T ss_pred             HHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCcccccH---H---H-HHhc--CCCCeEEEeCCcC
Confidence            4455999999999998888888889999988899999999999987643211   1   1 1111  1347899999999


Q ss_pred             CCHHHHHHHHHHhhh
Q 024325          251 AGIRSLRTVLSKIAR  265 (269)
Q Consensus       251 ~gi~~L~~~i~~~~~  265 (269)
                      .|+++|++++...+.
T Consensus       146 ~gv~~ll~~i~~~l~  160 (429)
T TIGR03594       146 RGIGDLLDAILELLP  160 (429)
T ss_pred             CChHHHHHHHHHhcC
Confidence            999999999987763

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.89  E-value=7.9e-22  Score=188.88  Aligned_cols=161  Identities=20%  Similarity=0.293  Sum_probs=120.2

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      ...++|+++|.||+|||||+|+|++. ..+.+++.||+|++.....   .+..+.+|||||+....  +.+..   .+..
T Consensus       273 ~~~~~V~IvG~~nvGKSSL~n~l~~~-~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~--~~~~~---~~~~  346 (712)
T PRK09518        273 KAVGVVAIVGRPNVGKSTLVNRILGR-REAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADV--EGIDS---AIAS  346 (712)
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHhCC-CceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCC--ccHHH---HHHH
Confidence            34588999999999999999999998 5678999999999976543   25679999999986421  11111   2222


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEee
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS  246 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vS  246 (269)
                      ........+|++++|+|+..++...+..+.+.+...++|+++|+||+|+......      ..+... . . ....+++|
T Consensus       347 ~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~~------~~~~~~-l-g-~~~~~~iS  417 (712)
T PRK09518        347 QAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEYD------AAEFWK-L-G-LGEPYPIS  417 (712)
T ss_pred             HHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccchhh------HHHHHH-c-C-CCCeEEEE
Confidence            2223334599999999999888888888889998889999999999998653211      111111 1 1 22458999


Q ss_pred             CCCCCCHHHHHHHHHHhhh
Q 024325          247 SKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       247 a~~g~gi~~L~~~i~~~~~  265 (269)
                      |++|.|+++|+++|.+.+.
T Consensus       418 A~~g~GI~eLl~~i~~~l~  436 (712)
T PRK09518        418 AMHGRGVGDLLDEALDSLK  436 (712)
T ss_pred             CCCCCCchHHHHHHHHhcc
Confidence            9999999999999988764

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.89  E-value=8.2e-22  Score=154.61  Aligned_cols=154  Identities=23%  Similarity=0.277  Sum_probs=108.2

Q ss_pred             EEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE---EEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhccc
Q 024325           97 FAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV  173 (269)
Q Consensus        97 ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~---~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (269)
                      ++|.+|+|||||+|++++..  ..++.++++|.+...   ...+..+.+|||||+.......    ....+...++.. .
T Consensus         1 l~G~~~~GKssl~~~~~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~----~~~~~~~~~~~~-~   73 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGAR--QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYS----EDEKVARDFLLG-E   73 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCc--ccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCC----hhHHHHHHHhcC-C
Confidence            57999999999999999973  567888988887642   2235679999999985432111    011233444443 5


Q ss_pred             ccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCH
Q 024325          174 SLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGI  253 (269)
Q Consensus       174 ~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi  253 (269)
                      .+|++++|+|+...  .....+...+...++|+++|+||+|+.+........+.+...      ...+++++||++|+|+
T Consensus        74 ~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~------~~~~~~~iSa~~~~~~  145 (158)
T cd01879          74 KPDLIVNVVDATNL--ERNLYLTLQLLELGLPVVVALNMIDEAEKRGIKIDLDKLSEL------LGVPVVPTSARKGEGI  145 (158)
T ss_pred             CCcEEEEEeeCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhcccccchhhHHHHHHh------hCCCeEEEEccCCCCH
Confidence            69999999998752  223445555666789999999999997654332222222221      1468999999999999


Q ss_pred             HHHHHHHHHhhh
Q 024325          254 RSLRTVLSKIAR  265 (269)
Q Consensus       254 ~~L~~~i~~~~~  265 (269)
                      ++++++|.+..+
T Consensus       146 ~~l~~~l~~~~~  157 (158)
T cd01879         146 DELKDAIAELAE  157 (158)
T ss_pred             HHHHHHHHHHhc
Confidence            999999987653

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.88  E-value=1.5e-21  Score=177.81  Aligned_cols=155  Identities=23%  Similarity=0.340  Sum_probs=116.0

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~  169 (269)
                      |+|+++|.+|+|||||+|+|++. ..+.+++.+|+|++.....   .+..+.+|||||+....  ....   ..+.....
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~-~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~--~~~~---~~~~~~~~   75 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGK-RDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDD--DGFE---KQIREQAE   75 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC-CceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcc--hhHH---HHHHHHHH
Confidence            68999999999999999999998 5678899999999875432   36789999999986521  1111   12222233


Q ss_pred             hcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCC
Q 024325          170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS  249 (269)
Q Consensus       170 ~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~  249 (269)
                      .....+|++++|+|+..+....+..+.+++...++|+++|+||+|+.....      ...+.. ..  ...+++++||++
T Consensus        76 ~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~~~------~~~~~~-~l--g~~~~~~iSa~~  146 (435)
T PRK00093         76 LAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDEEA------DAYEFY-SL--GLGEPYPISAEH  146 (435)
T ss_pred             HHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccchh------hHHHHH-hc--CCCCCEEEEeeC
Confidence            334459999999999988888888888888888999999999999764221      111111 11  123479999999


Q ss_pred             CCCHHHHHHHHHH
Q 024325          250 GAGIRSLRTVLSK  262 (269)
Q Consensus       250 g~gi~~L~~~i~~  262 (269)
                      |.|+++++++|..
T Consensus       147 g~gv~~l~~~I~~  159 (435)
T PRK00093        147 GRGIGDLLDAILE  159 (435)
T ss_pred             CCCHHHHHHHHHh
Confidence            9999999999976

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.88  E-value=3.3e-21  Score=158.10  Aligned_cols=159  Identities=23%  Similarity=0.279  Sum_probs=107.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcC-ccccCCCCCceeEeeEE------------------------------------Ee
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWG-VVRTSDKPGLTQTINFF------------------------------------KL  136 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~-~~~~s~~~gtt~~~~~~------------------------------------~~  136 (269)
                      +|+++|+.|+|||||+.+|.+... ...-.-..+.|-...+.                                    ..
T Consensus         2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (203)
T cd01888           2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL   81 (203)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence            699999999999999999976520 00000011111111100                                    01


Q ss_pred             CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCC-CCcchHHHHHHHHhhCC-cEEEEEecCC
Q 024325          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-VKPRDHELISLMERSQT-KYQVVLTKTD  214 (269)
Q Consensus       137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~-~~~~~~~~~~~l~~~~~-p~iiv~NK~D  214 (269)
                      ...+.||||||.             ..+...+...+..+|.+++|+|+..+ ...+....+..+...+. |+++|+||+|
T Consensus        82 ~~~i~~iDtPG~-------------~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~D  148 (203)
T cd01888          82 VRHVSFVDCPGH-------------EILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKID  148 (203)
T ss_pred             ccEEEEEECCCh-------------HHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchh
Confidence            156899999995             34556666777779999999999864 34454556666655554 6999999999


Q ss_pred             CCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          215 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       215 l~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      +..........+.+++.+........+++++||++|+|+++|+++|.+.+.
T Consensus       149 l~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~  199 (203)
T cd01888         149 LVKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIP  199 (203)
T ss_pred             ccCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence            987555544455555554433233578999999999999999999988664

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.88  E-value=5.9e-21  Score=155.25  Aligned_cols=157  Identities=18%  Similarity=0.245  Sum_probs=112.7

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcC----c-c---------ccCCCCCceeEeeEE---EeCCcEEEEcCCCCCCcchhH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWG----V-V---------RTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKE  155 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~----~-~---------~~s~~~gtt~~~~~~---~~~~~~~lvDtpG~~~~~~~~  155 (269)
                      .+|+++|++++|||||+++|++...    . .         ......|+|.+....   ..+..+.++||||+       
T Consensus         3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~-------   75 (195)
T cd01884           3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGH-------   75 (195)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCH-------
Confidence            5799999999999999999986410    0 0         011145677665433   23667999999997       


Q ss_pred             HHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCc-EEEEEecCCCCCchHHH-HHHHHHHHHHH
Q 024325          156 EVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVA-RRAMQIEESLK  233 (269)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p-~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~  233 (269)
                            ..+.......+..+|.+++|+|+..+...++.+++..+...++| +|+|+||+|+....+.. ...+.+...+.
T Consensus        76 ------~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~  149 (195)
T cd01884          76 ------ADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLS  149 (195)
T ss_pred             ------HHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHH
Confidence                  23444555566679999999999988888888899999888887 77999999997544332 23445666555


Q ss_pred             hcC--CCCCCeEEeeCCCCCCH----------HHHHHHHHH
Q 024325          234 ANN--SLVQPVMMVSSKSGAGI----------RSLRTVLSK  262 (269)
Q Consensus       234 ~~~--~~~~~vi~vSa~~g~gi----------~~L~~~i~~  262 (269)
                      ...  ....|++++||++|.|+          ..|++.|..
T Consensus       150 ~~g~~~~~v~iipiSa~~g~n~~~~~~w~~~~~~l~~~l~~  190 (195)
T cd01884         150 KYGFDGDNTPIVRGSALKALEGDDPNKWVKKILELLDALDS  190 (195)
T ss_pred             HhcccccCCeEEEeeCccccCCCCCCcchhcHhHHHHHHHh
Confidence            432  23578999999999984          466666644

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.87  E-value=1.3e-21  Score=155.17  Aligned_cols=156  Identities=17%  Similarity=0.165  Sum_probs=94.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCc--cccCCCCCceeEee---EEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGV--VRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~--~~~s~~~gtt~~~~---~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      +|+++|++|+|||||+|+|++....  ........+|....   +...+..+.+|||||...          +..+...+
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~~~   70 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQES----------LRSLWDKY   70 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChh----------hHHHHHHH
Confidence            4899999999999999999875211  01111122232222   222367799999999732          12222233


Q ss_pred             HhcccccceEEEEEeCCCCCCcch-HHHHHH-HH---hhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeE
Q 024325          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISL-ME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM  243 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~-l~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi  243 (269)
                      +   ..+|++++|+|+........ ..++.. +.   ..+.|+++|+||+|+............+............+++
T Consensus        71 ~---~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (167)
T cd04160          71 Y---AECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVL  147 (167)
T ss_pred             h---CCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEE
Confidence            3   34899999999874321111 122222 22   2468999999999987654333333332222211122245799


Q ss_pred             EeeCCCCCCHHHHHHHHHH
Q 024325          244 MVSSKSGAGIRSLRTVLSK  262 (269)
Q Consensus       244 ~vSa~~g~gi~~L~~~i~~  262 (269)
                      ++||++|+|+++++++|.+
T Consensus       148 ~~Sa~~g~gv~e~~~~l~~  166 (167)
T cd04160         148 PVSALEGTGVREGIEWLVE  166 (167)
T ss_pred             EeeCCCCcCHHHHHHHHhc
Confidence            9999999999999999965

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.87  E-value=7.1e-21  Score=177.88  Aligned_cols=160  Identities=26%  Similarity=0.366  Sum_probs=120.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCc-CccccCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~-~~~~~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~  169 (269)
                      .|+++|++|+|||||+|+|++.. ........+|+|.+..+..   .+..+.+|||||+             ..+...+.
T Consensus         2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGh-------------e~f~~~~~   68 (581)
T TIGR00475         2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGH-------------EKFISNAI   68 (581)
T ss_pred             EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCH-------------HHHHHHHH
Confidence            68999999999999999999852 0111223567888875433   2467899999996             23445555


Q ss_pred             hcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCc-EEEEEecCCCCCchHHHHHHHHHHHHHHhcCCC-CCCeEEeeC
Q 024325          170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVARRAMQIEESLKANNSL-VQPVMMVSS  247 (269)
Q Consensus       170 ~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p-~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~vi~vSa  247 (269)
                      .....+|++++|+|+..+...+..+.+..+...++| +++|+||+|+.+..........+.+.+...... ..|++++||
T Consensus        69 ~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA  148 (581)
T TIGR00475        69 AGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSA  148 (581)
T ss_pred             hhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeC
Confidence            666679999999999988777777777778778888 999999999987655444444555544433211 578999999


Q ss_pred             CCCCCHHHHHHHHHHhhhh
Q 024325          248 KSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       248 ~~g~gi~~L~~~i~~~~~~  266 (269)
                      ++|+|+++++++|...+..
T Consensus       149 ~tG~GI~eL~~~L~~l~~~  167 (581)
T TIGR00475       149 KTGQGIGELKKELKNLLES  167 (581)
T ss_pred             CCCCCchhHHHHHHHHHHh
Confidence            9999999999999877654

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>PRK09866 hypothetical protein; Provisional

Probab=99.87  E-value=1.9e-20  Score=171.16  Aligned_cols=117  Identities=19%  Similarity=0.113  Sum_probs=81.8

Q ss_pred             cEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhC--CcEEEEEecCCCC
Q 024325          139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ--TKYQVVLTKTDTV  216 (269)
Q Consensus       139 ~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~--~p~iiv~NK~Dl~  216 (269)
                      .++|+||||+..+.... .    ..++..   .+..+|+|+||+|+.......+..+++.+...+  .|+++|+||+|+.
T Consensus       231 QIIFVDTPGIhk~~~~~-L----~k~M~e---qL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~  302 (741)
T PRK09866        231 QLTLLDTPGPNEAGQPH-L----QKMLNQ---QLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQ  302 (741)
T ss_pred             CEEEEECCCCCCccchH-H----HHHHHH---HHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCC
Confidence            38999999997642210 1    111222   344599999999998777888888999888877  4999999999997


Q ss_pred             CchH--HHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHh
Q 024325          217 FPID--VARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI  263 (269)
Q Consensus       217 ~~~~--~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~  263 (269)
                      +..+  .+.....+...+.........+++|||++|.|++.|++.|...
T Consensus       303 dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~  351 (741)
T PRK09866        303 DRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN  351 (741)
T ss_pred             CcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence            5322  3333333333332222224579999999999999999999873

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.87  E-value=1.4e-21  Score=155.94  Aligned_cols=154  Identities=21%  Similarity=0.253  Sum_probs=102.5

Q ss_pred             EEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE---Ee-CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcc
Q 024325           97 FAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR  172 (269)
Q Consensus        97 ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~---~~-~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~  172 (269)
                      ++|++|||||||+|+|++. .. .+++++++|.+....   .. +..+.+|||||+.......      ..+...+....
T Consensus         1 iiG~~~~GKStll~~l~~~-~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~------~~~~~~~~~~~   72 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNA-KP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEG------RGLGNQFLAHI   72 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcC-Cc-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcC------CCccHHHHHHH
Confidence            5899999999999999998 33 678888888776432   23 6789999999985421111      11112233334


Q ss_pred             cccceEEEEEeCCCCC-----Ccc-h-HHHHHHHH----------hhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhc
Q 024325          173 VSLKRVCLLIDTKWGV-----KPR-D-HELISLME----------RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN  235 (269)
Q Consensus       173 ~~~d~vl~vid~~~~~-----~~~-~-~~~~~~l~----------~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~  235 (269)
                      ..+|++++|+|+....     ... + ..+...+.          ..++|+++|+||+|+..........  ...   ..
T Consensus        73 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~--~~~---~~  147 (176)
T cd01881          73 RRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEEL--VRE---LA  147 (176)
T ss_pred             hccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHH--HHH---Hh
Confidence            4499999999997542     111 1 11222222          1368999999999998765443321  111   11


Q ss_pred             CCCCCCeEEeeCCCCCCHHHHHHHHHHh
Q 024325          236 NSLVQPVMMVSSKSGAGIRSLRTVLSKI  263 (269)
Q Consensus       236 ~~~~~~vi~vSa~~g~gi~~L~~~i~~~  263 (269)
                      .....+++++||++|.|+++++++|...
T Consensus       148 ~~~~~~~~~~Sa~~~~gl~~l~~~l~~~  175 (176)
T cd01881         148 LEEGAEVVPISAKTEEGLDELIRAIYEL  175 (176)
T ss_pred             cCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence            1235679999999999999999998764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd04154 Arl2 Arl2 subfamily

Probab=99.87  E-value=5.7e-21  Score=152.66  Aligned_cols=153  Identities=20%  Similarity=0.205  Sum_probs=96.6

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHh
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~  170 (269)
                      ..++|+++|++|+|||||+++|.+. ......+..|..... +...+..+.+|||||...          +..+...++ 
T Consensus        13 ~~~kv~ivG~~~~GKTsL~~~l~~~-~~~~~~~t~g~~~~~-~~~~~~~l~l~D~~G~~~----------~~~~~~~~~-   79 (173)
T cd04154          13 REMRILILGLDNAGKTTILKKLLGE-DIDTISPTLGFQIKT-LEYEGYKLNIWDVGGQKT----------LRPYWRNYF-   79 (173)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccC-CCCCcCCccccceEE-EEECCEEEEEEECCCCHH----------HHHHHHHHh-
Confidence            3468999999999999999999987 333333333322211 112356789999999621          122223333 


Q ss_pred             cccccceEEEEEeCCCCCCcc--hHHHHHHHH---hhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHh--cCCCCCCeE
Q 024325          171 TRVSLKRVCLLIDTKWGVKPR--DHELISLME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA--NNSLVQPVM  243 (269)
Q Consensus       171 ~~~~~d~vl~vid~~~~~~~~--~~~~~~~l~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~vi  243 (269)
                        ..+|++++|+|+.......  ...+...+.   ..+.|+++|+||+|+........    +.+.+..  ......+++
T Consensus        80 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~~  153 (173)
T cd04154          80 --ESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEE----IREALELDKISSHHWRIQ  153 (173)
T ss_pred             --CCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHH----HHHHhCccccCCCceEEE
Confidence              3499999999987542111  112222222   24689999999999976432222    2222211  112346899


Q ss_pred             EeeCCCCCCHHHHHHHHHH
Q 024325          244 MVSSKSGAGIRSLRTVLSK  262 (269)
Q Consensus       244 ~vSa~~g~gi~~L~~~i~~  262 (269)
                      ++||++|.|+++++++|.+
T Consensus       154 ~~Sa~~g~gi~~l~~~l~~  172 (173)
T cd04154         154 PCSAVTGEGLLQGIDWLVD  172 (173)
T ss_pred             eccCCCCcCHHHHHHHHhc
Confidence            9999999999999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd01890 LepA LepA subfamily

Probab=99.87  E-value=7.1e-21  Score=152.66  Aligned_cols=154  Identities=22%  Similarity=0.224  Sum_probs=99.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCcc----c---------cCCCCCceeEee---EE-----EeCCcEEEEcCCCCCCcc
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVV----R---------TSDKPGLTQTIN---FF-----KLGTKLCLVDLPGYGFAY  152 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~----~---------~s~~~gtt~~~~---~~-----~~~~~~~lvDtpG~~~~~  152 (269)
                      +|+++|.+|+|||||+++|++.....    .         .....|+|....   ..     ..+..+.+|||||+... 
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-   80 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF-   80 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh-
Confidence            69999999999999999998742100    0         011223443321   11     12445789999997431 


Q ss_pred             hhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHH
Q 024325          153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESL  232 (269)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~  232 (269)
                               ..+...++.   .+|++++|+|+..+....+...+..+...++|+++|+||+|+.... .....+.+.+.+
T Consensus        81 ---------~~~~~~~~~---~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~  147 (179)
T cd01890          81 ---------SYEVSRSLA---ACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSAD-PERVKQQIEDVL  147 (179)
T ss_pred             ---------HHHHHHHHH---hcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCC-HHHHHHHHHHHh
Confidence                     222223333   3999999999987665555555455555689999999999986432 222223333322


Q ss_pred             HhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325          233 KANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       233 ~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      .   ....+++++||++|+|+++|+++|.+.+
T Consensus       148 ~---~~~~~~~~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         148 G---LDPSEAILVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             C---CCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence            1   1123589999999999999999998765

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.87  E-value=3.6e-21  Score=158.45  Aligned_cols=149  Identities=16%  Similarity=0.158  Sum_probs=100.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccC------------------------------CCCCceeEeeEE---EeCCcE
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTS------------------------------DKPGLTQTINFF---KLGTKL  140 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s------------------------------~~~gtt~~~~~~---~~~~~~  140 (269)
                      +|+++|++|+|||||+++|+.... ...+                              ..+|+|.+....   ..+..+
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~   79 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSK-SIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKF   79 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceE
Confidence            489999999999999999986532 1111                              126677776432   346789


Q ss_pred             EEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCC-cEEEEEecCCCCCch
Q 024325          141 CLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT-KYQVVLTKTDTVFPI  219 (269)
Q Consensus       141 ~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~-p~iiv~NK~Dl~~~~  219 (269)
                      .++||||+.             .+..........+|++++|+|+..+....+......+...+. ++++|+||+|+....
T Consensus        80 ~liDTpG~~-------------~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~  146 (208)
T cd04166          80 IIADTPGHE-------------QYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYS  146 (208)
T ss_pred             EEEECCcHH-------------HHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCC
Confidence            999999962             112222333455999999999988776666666666666664 477899999997532


Q ss_pred             H--HHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHH
Q 024325          220 D--VARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL  256 (269)
Q Consensus       220 ~--~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L  256 (269)
                      .  .......+...+........+++++||++|.|+++.
T Consensus       147 ~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         147 EEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            2  233344444444443322356999999999999754

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.86  E-value=1.7e-20  Score=175.84  Aligned_cols=159  Identities=23%  Similarity=0.363  Sum_probs=121.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCc-CccccCCCCCceeEeeEEEe----CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~-~~~~~s~~~gtt~~~~~~~~----~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      .|+++|++++|||||+++|++.. .........|.|.+..+...    +..+.+|||||+             ..+...+
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGh-------------e~fi~~m   68 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGH-------------EKFLSNM   68 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCH-------------HHHHHHH
Confidence            58999999999999999999852 11222344688888765432    456899999996             2344555


Q ss_pred             HhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCc-EEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeC
Q 024325          169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS  247 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p-~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa  247 (269)
                      ......+|++++|+|+..++.+++.+.+..+...++| +++|+||+|+.+..........+.+.+........|++++||
T Consensus        69 ~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA  148 (614)
T PRK10512         69 LAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAA  148 (614)
T ss_pred             HHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeC
Confidence            5666679999999999998888888888888887887 579999999987655555556666555443222478999999


Q ss_pred             CCCCCHHHHHHHHHHhhh
Q 024325          248 KSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       248 ~~g~gi~~L~~~i~~~~~  265 (269)
                      ++|+|+++|++.|.....
T Consensus       149 ~tG~gI~~L~~~L~~~~~  166 (614)
T PRK10512        149 TEGRGIDALREHLLQLPE  166 (614)
T ss_pred             CCCCCCHHHHHHHHHhhc
Confidence            999999999999987654

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.86  E-value=1.2e-20  Score=180.57  Aligned_cols=158  Identities=21%  Similarity=0.241  Sum_probs=114.2

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE---EEeCCcEEEEcCCCCCCcch---hHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYA---KEEVKDAWEELVK  166 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~---~~~~~~~~lvDtpG~~~~~~---~~~~~~~~~~~~~  166 (269)
                      ++|+++|+||+|||||+|+|++..  ..+++.||+|.+...   ...+..+.++||||+.+-..   .....   +....
T Consensus         4 ~~IaLvG~pNvGKSTLfN~Ltg~~--~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~---E~i~~   78 (772)
T PRK09554          4 LTIGLIGNPNSGKTTLFNQLTGAR--QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLD---EQIAC   78 (772)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC--CccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHH---HHHHH
Confidence            579999999999999999999984  578999999988643   23466899999999864211   01111   11223


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEee
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS  246 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vS  246 (269)
                      .|+. ...+|++++|+|+++.  .....+...+.+.++|+++|+||+|+..........+.+.+.+      +.|++++|
T Consensus        79 ~~l~-~~~aD~vI~VvDat~l--er~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~L------G~pVvpiS  149 (772)
T PRK09554         79 HYIL-SGDADLLINVVDASNL--ERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSARL------GCPVIPLV  149 (772)
T ss_pred             HHHh-ccCCCEEEEEecCCcc--hhhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHHHHh------CCCEEEEE
Confidence            3332 2348999999999752  3344566677778999999999999875444333333333322      57999999


Q ss_pred             CCCCCCHHHHHHHHHHhh
Q 024325          247 SKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       247 a~~g~gi~~L~~~i~~~~  264 (269)
                      |++|+|++++.+.|.+..
T Consensus       150 A~~g~GIdeL~~~I~~~~  167 (772)
T PRK09554        150 STRGRGIEALKLAIDRHQ  167 (772)
T ss_pred             eecCCCHHHHHHHHHHhh
Confidence            999999999999997764

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.86  E-value=9.7e-21  Score=148.91  Aligned_cols=150  Identities=15%  Similarity=0.152  Sum_probs=95.6

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE--EEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~--~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      .+|+++|.+|+|||||+|++++..   +...+.+|+.+...  ...   ...+.+|||||...          +..+...
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~l~~~   68 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNH---FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE----------YSAMRDQ   68 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCC---CcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcc----------hHHHHHH
Confidence            479999999999999999999872   23344444433211  111   23477899999632          2334444


Q ss_pred             HHhcccccceEEEEEeCCCCCCcch-HHHHHHHH----hhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  242 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~----~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  242 (269)
                      |+..   ++.+++|+|........+ ..++..+.    ..+.|+++|+||+|+............+.   ..   ...++
T Consensus        69 ~~~~---~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~---~~---~~~~~  139 (162)
T cd04138          69 YMRT---GEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLA---KS---YGIPY  139 (162)
T ss_pred             HHhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHH---HH---hCCeE
Confidence            4443   899999998864322111 12222222    23689999999999976322222122221   11   24689


Q ss_pred             EEeeCCCCCCHHHHHHHHHHhh
Q 024325          243 MMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       243 i~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      +++||++|.|+++++++|.+.+
T Consensus       140 ~~~Sa~~~~gi~~l~~~l~~~~  161 (162)
T cd04138         140 IETSAKTRQGVEEAFYTLVREI  161 (162)
T ss_pred             EEecCCCCCCHHHHHHHHHHHh
Confidence            9999999999999999998654

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.86  E-value=7.6e-21  Score=158.38  Aligned_cols=174  Identities=22%  Similarity=0.245  Sum_probs=122.5

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      ....|+++|.||+|||||.|.+.|. .++.++..+.||+.-.   +......++|+||||+...... ........+...
T Consensus        71 k~L~vavIG~PNvGKStLtN~mig~-kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~-r~~~l~~s~lq~  148 (379)
T KOG1423|consen   71 KSLYVAVIGAPNVGKSTLTNQMIGQ-KVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMH-RRHHLMMSVLQN  148 (379)
T ss_pred             eEEEEEEEcCCCcchhhhhhHhhCC-ccccccccccceeeeeeEEEecCceEEEEecCCcccccchh-hhHHHHHHhhhC
Confidence            3468999999999999999999999 8899999999988754   3334678999999998764211 111111233345


Q ss_pred             HHhcccccceEEEEEeCCCCCCcchHHHHHHHHhh-CCcEEEEEecCCCCCchHH-------------HHHHHHHHHHHH
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS-QTKYQVVLTKTDTVFPIDV-------------ARRAMQIEESLK  233 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~-~~p~iiv~NK~Dl~~~~~~-------------~~~~~~~~~~~~  233 (269)
                      +......+|.+++|+|++..-......++..+... .+|-++|+||+|......+             ....-.+++.+.
T Consensus       149 ~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~  228 (379)
T KOG1423|consen  149 PRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFT  228 (379)
T ss_pred             HHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhc
Confidence            55666679999999999864445556777777664 6899999999999864322             110111112111


Q ss_pred             hcC-----------CCCCCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325          234 ANN-----------SLVQPVMMVSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       234 ~~~-----------~~~~~vi~vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      ...           ..+..+|++||++|+||++|.++|...+.+
T Consensus       229 ~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~  272 (379)
T KOG1423|consen  229 DVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP  272 (379)
T ss_pred             cCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCC
Confidence            111           113348999999999999999999987754

>cd04149 Arf6 Arf6 subfamily

Probab=99.86  E-value=1.1e-20  Score=150.41  Aligned_cols=153  Identities=18%  Similarity=0.153  Sum_probs=94.4

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee-EEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHh
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~-~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~  170 (269)
                      .++|+++|.+|+|||||+++|... ...  ...|.+..+.. ....+..+.+|||||...          +..+...++.
T Consensus         9 ~~kv~i~G~~~~GKTsli~~l~~~-~~~--~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~~~~~   75 (168)
T cd04149           9 EMRILMLGLDAAGKTTILYKLKLG-QSV--TTIPTVGFNVETVTYKNVKFNVWDVGGQDK----------IRPLWRHYYT   75 (168)
T ss_pred             ccEEEEECcCCCCHHHHHHHHccC-CCc--cccCCcccceEEEEECCEEEEEEECCCCHH----------HHHHHHHHhc
Confidence            468999999999999999999875 222  22232222222 222356799999999721          1222233333


Q ss_pred             cccccceEEEEEeCCCCCCc--chHHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEe
Q 024325          171 TRVSLKRVCLLIDTKWGVKP--RDHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV  245 (269)
Q Consensus       171 ~~~~~d~vl~vid~~~~~~~--~~~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v  245 (269)
                         .+|++++|+|++.....  ....+.+.+..   .+.|+++|+||+|+.......+..+.+.  +........+++++
T Consensus        76 ---~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~--~~~~~~~~~~~~~~  150 (168)
T cd04149          76 ---GTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLG--LTRIRDRNWYVQPS  150 (168)
T ss_pred             ---cCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcC--CCccCCCcEEEEEe
Confidence               39999999998753221  12223333332   3589999999999875322222221111  00111123468999


Q ss_pred             eCCCCCCHHHHHHHHHH
Q 024325          246 SSKSGAGIRSLRTVLSK  262 (269)
Q Consensus       246 Sa~~g~gi~~L~~~i~~  262 (269)
                      ||++|.|+++++++|.+
T Consensus       151 SAk~g~gv~~~~~~l~~  167 (168)
T cd04149         151 CATSGDGLYEGLTWLSS  167 (168)
T ss_pred             eCCCCCChHHHHHHHhc
Confidence            99999999999999864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.86  E-value=6.9e-21  Score=149.88  Aligned_cols=153  Identities=17%  Similarity=0.206  Sum_probs=92.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhccc
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV  173 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (269)
                      +|+++|.+|+|||||+|++.+. ......+..+.+...........+.+|||||...      .    ..+...++   .
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~------~----~~~~~~~~---~   66 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHA-ELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEK------M----RTVWKCYL---E   66 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcC-CcccccCccCcceEEEEeCCceEEEEEECCCCHh------H----HHHHHHHh---c
Confidence            4899999999999999999987 3322223223222211222245799999999632      1    11222222   3


Q ss_pred             ccceEEEEEeCCCCCC--cchHHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhc-CCCCCCeEEeeC
Q 024325          174 SLKRVCLLIDTKWGVK--PRDHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN-NSLVQPVMMVSS  247 (269)
Q Consensus       174 ~~d~vl~vid~~~~~~--~~~~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~vi~vSa  247 (269)
                      .+|++++|+|+++...  .....+...+..   .+.|+++|+||+|+............+.  .... .....+++++||
T Consensus        67 ~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~Sa  144 (160)
T cd04156          67 NTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFK--LKKYCSDRDWYVQPCSA  144 (160)
T ss_pred             cCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcC--CcccCCCCcEEEEeccc
Confidence            4899999999975431  111223333322   4689999999999965322222221111  0111 112346899999


Q ss_pred             CCCCCHHHHHHHHHH
Q 024325          248 KSGAGIRSLRTVLSK  262 (269)
Q Consensus       248 ~~g~gi~~L~~~i~~  262 (269)
                      ++|+|+++++++|..
T Consensus       145 ~~~~gv~~~~~~i~~  159 (160)
T cd04156         145 VTGEGLAEAFRKLAS  159 (160)
T ss_pred             ccCCChHHHHHHHhc
Confidence            999999999999854

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.86  E-value=2.4e-20  Score=146.96  Aligned_cols=145  Identities=21%  Similarity=0.298  Sum_probs=95.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhccc
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV  173 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (269)
                      +|+++|++|+|||||+|+|.+...   ..   ..|..+.+...    .+|||||+..... .        +.........
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~---~~---~~~~~v~~~~~----~~iDtpG~~~~~~-~--------~~~~~~~~~~   63 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYT---LA---RKTQAVEFNDK----GDIDTPGEYFSHP-R--------WYHALITTLQ   63 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCc---cC---ccceEEEECCC----CcccCCccccCCH-H--------HHHHHHHHHh
Confidence            699999999999999999998731   11   13334333222    2699999854321 1        1112222244


Q ss_pred             ccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCH
Q 024325          174 SLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGI  253 (269)
Q Consensus       174 ~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi  253 (269)
                      .+|++++|+|+..+.......+...  ..+.|+++++||+|+... +...    +.+.+... ....|++++||++|+|+
T Consensus        64 ~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~~-~~~~----~~~~~~~~-~~~~p~~~~Sa~~g~gi  135 (158)
T PRK15467         64 DVDMLIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMPDA-DVAA----TRKLLLET-GFEEPIFELNSHDPQSV  135 (158)
T ss_pred             cCCEEEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccCcc-cHHH----HHHHHHHc-CCCCCEEEEECCCccCH
Confidence            5999999999986544444333332  236799999999998643 2222    22222222 22369999999999999


Q ss_pred             HHHHHHHHHhhh
Q 024325          254 RSLRTVLSKIAR  265 (269)
Q Consensus       254 ~~L~~~i~~~~~  265 (269)
                      ++|++.|.+.+.
T Consensus       136 ~~l~~~l~~~~~  147 (158)
T PRK15467        136 QQLVDYLASLTK  147 (158)
T ss_pred             HHHHHHHHHhch
Confidence            999999988764

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.86  E-value=2.2e-20  Score=147.47  Aligned_cols=152  Identities=16%  Similarity=0.160  Sum_probs=98.2

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE--EEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~--~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      .+|+++|.+|+|||||++++++.   ..++.+++++.+...  ...   ...+.+|||||...          +..+...
T Consensus         3 ~ki~i~G~~~~GKtsl~~~~~~~---~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~   69 (164)
T cd04145           3 YKLVVVGGGGVGKSALTIQFIQS---YFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEE----------FSAMREQ   69 (164)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhC---CCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcc----------hhHHHHH
Confidence            58999999999999999999986   234555555543221  111   23578999999632          1233344


Q ss_pred             HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  242 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  242 (269)
                      ++..   +|.+++|+|++...+... ..++..+..    .+.|+++|+||+|+........  +...+....   ...++
T Consensus        70 ~~~~---~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~--~~~~~~~~~---~~~~~  141 (164)
T cd04145          70 YMRT---GEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSR--EEGQELARK---LKIPY  141 (164)
T ss_pred             HHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecH--HHHHHHHHH---cCCcE
Confidence            4433   899999999875322111 122222222    3689999999999975432111  111222222   24689


Q ss_pred             EEeeCCCCCCHHHHHHHHHHhhh
Q 024325          243 MMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       243 i~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      +++||++|.|+++++++|.+.++
T Consensus       142 ~~~Sa~~~~~i~~l~~~l~~~~~  164 (164)
T cd04145         142 IETSAKDRLNVDKAFHDLVRVIR  164 (164)
T ss_pred             EEeeCCCCCCHHHHHHHHHHhhC
Confidence            99999999999999999987653

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.85  E-value=1.1e-20  Score=173.12  Aligned_cols=156  Identities=22%  Similarity=0.313  Sum_probs=118.6

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE---EEeCCcEEEEcCCCCCCc--chhHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFA--YAKEEVKDAWEELVKE  167 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~---~~~~~~~~lvDtpG~~~~--~~~~~~~~~~~~~~~~  167 (269)
                      .+|+++|+||+|||||+|+|+|.+  ..++|.||+|.+...   ...+..+.++|+||.++-  .+.|      +...++
T Consensus         4 ~~valvGNPNvGKTtlFN~LTG~~--q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~D------E~Var~   75 (653)
T COG0370           4 LTVALVGNPNVGKTTLFNALTGAN--QKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSED------EKVARD   75 (653)
T ss_pred             ceEEEecCCCccHHHHHHHHhccC--ceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCch------HHHHHH
Confidence            469999999999999999999985  789999999988753   344777999999998652  2222      233445


Q ss_pred             HHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeC
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS  247 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa  247 (269)
                      |+.. ...|+++.|+|+++  -+....+.-++.+.++|+++++|++|........-..+.+.+.+      +.|++++||
T Consensus        76 ~ll~-~~~D~ivnVvDAtn--LeRnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~L------GvPVv~tvA  146 (653)
T COG0370          76 FLLE-GKPDLIVNVVDATN--LERNLYLTLQLLELGIPMILALNMIDEAKKRGIRIDIEKLSKLL------GVPVVPTVA  146 (653)
T ss_pred             HHhc-CCCCEEEEEcccch--HHHHHHHHHHHHHcCCCeEEEeccHhhHHhcCCcccHHHHHHHh------CCCEEEEEe
Confidence            5442 34899999999974  33445666667778999999999999875543333334444433      699999999


Q ss_pred             CCCCCHHHHHHHHHHhhh
Q 024325          248 KSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       248 ~~g~gi~~L~~~i~~~~~  265 (269)
                      ++|+|+++|++.|.+..+
T Consensus       147 ~~g~G~~~l~~~i~~~~~  164 (653)
T COG0370         147 KRGEGLEELKRAIIELAE  164 (653)
T ss_pred             ecCCCHHHHHHHHHHhcc
Confidence            999999999999987554

>cd04157 Arl6 Arl6 subfamily

Probab=99.85  E-value=2e-20  Score=147.45  Aligned_cols=153  Identities=16%  Similarity=0.209  Sum_probs=94.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCc-CccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcc
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR  172 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~-~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~  172 (269)
                      +|+++|.+|+|||||+++|++.. ......+..|++... +...+..+.+|||||...          +..+...++   
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~-~~~~~~~~~l~Dt~G~~~----------~~~~~~~~~---   66 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES-FEKGNLSFTAFDMSGQGK----------YRGLWEHYY---   66 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE-EEECCEEEEEEECCCCHh----------hHHHHHHHH---
Confidence            48999999999999999999862 112233334433222 223456789999999632          122223333   


Q ss_pred             cccceEEEEEeCCCCCCcch-HHHHHHH-H-----hhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEe
Q 024325          173 VSLKRVCLLIDTKWGVKPRD-HELISLM-E-----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV  245 (269)
Q Consensus       173 ~~~d~vl~vid~~~~~~~~~-~~~~~~l-~-----~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v  245 (269)
                      ..+|++++|+|++....... ...+..+ .     ..++|+++|+||+|+............+.  +........+++++
T Consensus        67 ~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~--~~~~~~~~~~~~~~  144 (162)
T cd04157          67 KNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLG--LENIKDKPWHIFAS  144 (162)
T ss_pred             ccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhC--CccccCceEEEEEe
Confidence            34999999999975432111 1222222 2     23689999999999976432222111111  00101112358999


Q ss_pred             eCCCCCCHHHHHHHHHH
Q 024325          246 SSKSGAGIRSLRTVLSK  262 (269)
Q Consensus       246 Sa~~g~gi~~L~~~i~~  262 (269)
                      ||++|.|+++++++|.+
T Consensus       145 Sa~~g~gv~~~~~~l~~  161 (162)
T cd04157         145 NALTGEGLDEGVQWLQA  161 (162)
T ss_pred             eCCCCCchHHHHHHHhc
Confidence            99999999999999865

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd00880 Era_like Era (E

Probab=99.85  E-value=5.8e-20  Score=143.11  Aligned_cols=159  Identities=28%  Similarity=0.289  Sum_probs=110.0

Q ss_pred             EEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe----CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcc
Q 024325           97 FAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR  172 (269)
Q Consensus        97 ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~----~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~  172 (269)
                      ++|++|+|||||+|+|++. .....+..+++|.+......    +..+.+|||||+.........   +......+   .
T Consensus         1 i~G~~gsGKstl~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~---~~~~~~~~---~   73 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQ-EVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGRE---REELARRV---L   73 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCc-cccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhh---HHHHHHHH---H
Confidence            5899999999999999987 44556777777766543322    568999999998764322110   01111222   2


Q ss_pred             cccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCC
Q 024325          173 VSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAG  252 (269)
Q Consensus       173 ~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~g  252 (269)
                      ..+|.+++|+|+..........+.......+.|+++|+||+|+..+...........  .........+++++||+++.|
T Consensus        74 ~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~sa~~~~~  151 (163)
T cd00880          74 ERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEELLELRL--LILLLLLGLPVIAVSALTGEG  151 (163)
T ss_pred             HhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHHHHHHHHH--hhcccccCCceEEEeeeccCC
Confidence            238999999999876655555545566667899999999999997655443321111  111223467899999999999


Q ss_pred             HHHHHHHHHHhh
Q 024325          253 IRSLRTVLSKIA  264 (269)
Q Consensus       253 i~~L~~~i~~~~  264 (269)
                      +++++++|.+.+
T Consensus       152 v~~l~~~l~~~~  163 (163)
T cd00880         152 IDELREALIEAL  163 (163)
T ss_pred             HHHHHHHHHhhC
Confidence            999999998753

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>cd04151 Arl1 Arl1 subfamily

Probab=99.85  E-value=2.4e-20  Score=146.71  Aligned_cols=151  Identities=19%  Similarity=0.186  Sum_probs=92.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe-eEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcc
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR  172 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~-~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~  172 (269)
                      +|+++|++|+|||||+++|.... ..  ...|.+..+. .+...+..+.+|||||...          +..+...++   
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~-~~--~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~~~---   64 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGE-VV--TTIPTIGFNVETVTYKNLKFQVWDLGGQTS----------IRPYWRCYY---   64 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCC-Cc--CcCCccCcCeEEEEECCEEEEEEECCCCHH----------HHHHHHHHh---
Confidence            48999999999999999997762 22  2222111121 1222356789999999732          112222333   


Q ss_pred             cccceEEEEEeCCCCCCc--chHHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeC
Q 024325          173 VSLKRVCLLIDTKWGVKP--RDHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS  247 (269)
Q Consensus       173 ~~~d~vl~vid~~~~~~~--~~~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa  247 (269)
                      ..+|++++|+|++.....  ....+...+..   .+.|+++|+||+|+..+....+....+.  .........+++++||
T Consensus        65 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~--~~~~~~~~~~~~~~Sa  142 (158)
T cd04151          65 SNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLG--LSELKDRTWSIFKTSA  142 (158)
T ss_pred             cCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhC--ccccCCCcEEEEEeec
Confidence            349999999998753211  12233333332   3689999999999975432222212111  0011112347999999


Q ss_pred             CCCCCHHHHHHHHHH
Q 024325          248 KSGAGIRSLRTVLSK  262 (269)
Q Consensus       248 ~~g~gi~~L~~~i~~  262 (269)
                      ++|.|+++++++|.+
T Consensus       143 ~~~~gi~~l~~~l~~  157 (158)
T cd04151         143 IKGEGLDEGMDWLVN  157 (158)
T ss_pred             cCCCCHHHHHHHHhc
Confidence            999999999999865

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.85  E-value=1.4e-20  Score=157.63  Aligned_cols=157  Identities=21%  Similarity=0.224  Sum_probs=112.4

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe----CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~----~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      ...|.++|.||||||||+|+|+...  ..+.++++||......+.    ...+.+.|.||+....+.+      ..+--.
T Consensus       196 iadvGLVG~PNAGKSTLL~als~AK--pkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~n------kGlG~~  267 (366)
T KOG1489|consen  196 IADVGLVGFPNAGKSTLLNALSRAK--PKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMN------KGLGYK  267 (366)
T ss_pred             ecccceecCCCCcHHHHHHHhhccC--CcccccceeeeccccceeeccccceeEeccCcccccccccc------CcccHH
Confidence            3579999999999999999999984  589999999988754332    3349999999998764433      234456


Q ss_pred             HHhcccccceEEEEEeCCCCCCcchH----HHHHHHHh-----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCC
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRDH----ELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSL  238 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~~----~~~~~l~~-----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  238 (269)
                      |+++.+-++.++||+|.+........    .+...++.     .+.|.++|+||+|+.+.+  ......+.+.++     
T Consensus       268 FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae--~~~l~~L~~~lq-----  340 (366)
T KOG1489|consen  268 FLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE--KNLLSSLAKRLQ-----  340 (366)
T ss_pred             HHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH--HHHHHHHHHHcC-----
Confidence            67777779999999999865222222    22233322     367999999999986332  122233333332     


Q ss_pred             CCCeEEeeCCCCCCHHHHHHHHHHh
Q 024325          239 VQPVMMVSSKSGAGIRSLRTVLSKI  263 (269)
Q Consensus       239 ~~~vi~vSa~~g~gi~~L~~~i~~~  263 (269)
                      ...|+++||++++|+.+|++.|.+.
T Consensus       341 ~~~V~pvsA~~~egl~~ll~~lr~~  365 (366)
T KOG1489|consen  341 NPHVVPVSAKSGEGLEELLNGLREL  365 (366)
T ss_pred             CCcEEEeeeccccchHHHHHHHhhc
Confidence            2359999999999999999988764

>cd04124 RabL2 RabL2 subfamily

Probab=99.85  E-value=1.3e-19  Score=143.19  Aligned_cols=152  Identities=16%  Similarity=0.159  Sum_probs=96.4

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe--e---EEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--N---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~--~---~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      .+|+++|.+|+|||||++++++.. .. ....+....+.  .   .......+.+|||||..          .+..+...
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~   68 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDG-YE-PQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQE----------RFQTMHAS   68 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCC-CC-CCcCCceeeEEEEEEEEECCEEEEEEEEeCCCch----------hhhhhhHH
Confidence            379999999999999999998762 11 11111111111  1   11123457899999962          22334444


Q ss_pred             HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHhh--CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEE
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM  244 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~  244 (269)
                      ++.   .+|++++|+|++.+.+..+ ..++..+...  +.|+++|+||+|+....  ...   .......   ...++++
T Consensus        69 ~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~--~~~---~~~~~~~---~~~~~~~  137 (161)
T cd04124          69 YYH---KAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSV--TQK---KFNFAEK---HNLPLYY  137 (161)
T ss_pred             HhC---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhH--HHH---HHHHHHH---cCCeEEE
Confidence            443   4899999999875433222 2445555443  68999999999985321  111   1111111   2468999


Q ss_pred             eeCCCCCCHHHHHHHHHHhhhhh
Q 024325          245 VSSKSGAGIRSLRTVLSKIARFA  267 (269)
Q Consensus       245 vSa~~g~gi~~L~~~i~~~~~~~  267 (269)
                      +||++|.|++++++.+.+.+...
T Consensus       138 ~Sa~~~~gv~~l~~~l~~~~~~~  160 (161)
T cd04124         138 VSAADGTNVVKLFQDAIKLAVSY  160 (161)
T ss_pred             EeCCCCCCHHHHHHHHHHHHHhc
Confidence            99999999999999998876543

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.85  E-value=3.4e-20  Score=148.40  Aligned_cols=154  Identities=17%  Similarity=0.174  Sum_probs=95.0

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhc
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST  171 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~  171 (269)
                      ..+|+++|++|+|||||+++++... .....+..+.+.. .+...+..+.+|||||...      .    ......++  
T Consensus        15 ~~kv~~~G~~~~GKTsl~~~l~~~~-~~~~~~t~~~~~~-~~~~~~~~~~l~D~~G~~~------~----~~~~~~~~--   80 (174)
T cd04153          15 EYKVIIVGLDNAGKTTILYQFLLGE-VVHTSPTIGSNVE-EIVYKNIRFLMWDIGGQES------L----RSSWNTYY--   80 (174)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCC-CCCcCCccccceE-EEEECCeEEEEEECCCCHH------H----HHHHHHHh--
Confidence            3589999999999999999998762 2223333222221 2222366799999999621      1    11222222  


Q ss_pred             ccccceEEEEEeCCCCCCcc--hHHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEee
Q 024325          172 RVSLKRVCLLIDTKWGVKPR--DHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS  246 (269)
Q Consensus       172 ~~~~d~vl~vid~~~~~~~~--~~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vS  246 (269)
                       ..+|++++|+|++......  ...+...+..   .+.|+++|+||+|+.......+..+.+.  .........+++++|
T Consensus        81 -~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~--~~~~~~~~~~~~~~S  157 (174)
T cd04153          81 -TNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLG--LTSIRDHTWHIQGCC  157 (174)
T ss_pred             -hcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhC--cccccCCceEEEecc
Confidence             3499999999987542211  1223333322   3589999999999875332222222211  001112235789999


Q ss_pred             CCCCCCHHHHHHHHHH
Q 024325          247 SKSGAGIRSLRTVLSK  262 (269)
Q Consensus       247 a~~g~gi~~L~~~i~~  262 (269)
                      |++|+|+++++++|.+
T Consensus       158 A~~g~gi~e~~~~l~~  173 (174)
T cd04153         158 ALTGEGLPEGLDWIAS  173 (174)
T ss_pred             cCCCCCHHHHHHHHhc
Confidence            9999999999999864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04136 Rap_like Rap-like subfamily

Probab=99.85  E-value=3.2e-20  Score=146.40  Aligned_cols=151  Identities=15%  Similarity=0.090  Sum_probs=95.6

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEEe--CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      ++|+++|.+|||||||++++++..   +...+++|+.+..   ....  ...+.+|||||...          +..+...
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~   68 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGI---FVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQ----------FTAMRDL   68 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCC---CCcccCCchhhhEEEEEEECCEEEEEEEEECCCccc----------cchHHHH
Confidence            479999999999999999999762   3344444543321   1111  23577899999632          1223333


Q ss_pred             HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  242 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  242 (269)
                      |+.   .+|++++|+|.+...+..+ ..++..+..    .+.|+++|+||+|+........  .........   ...++
T Consensus        69 ~~~---~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~~~---~~~~~  140 (163)
T cd04136          69 YIK---NGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSR--EEGQALARQ---WGCPF  140 (163)
T ss_pred             Hhh---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecH--HHHHHHHHH---cCCeE
Confidence            333   3899999999875322221 223333332    3589999999999875322211  111111111   13689


Q ss_pred             EEeeCCCCCCHHHHHHHHHHhh
Q 024325          243 MMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       243 i~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      +++||++|.|+++++++|.+.+
T Consensus       141 ~~~Sa~~~~~v~~l~~~l~~~~  162 (163)
T cd04136         141 YETSAKSKINVDEVFADLVRQI  162 (163)
T ss_pred             EEecCCCCCCHHHHHHHHHHhc
Confidence            9999999999999999998754

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04155 Arl3 Arl3 subfamily

Probab=99.85  E-value=2.6e-20  Score=148.52  Aligned_cols=155  Identities=19%  Similarity=0.240  Sum_probs=96.6

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHh
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~  170 (269)
                      ..++|+++|++|||||||+++|.+. ......+..|.+... ....+..+.+|||||...          .......+  
T Consensus        13 ~~~~v~i~G~~g~GKStLl~~l~~~-~~~~~~~t~g~~~~~-i~~~~~~~~~~D~~G~~~----------~~~~~~~~--   78 (173)
T cd04155          13 EEPRILILGLDNAGKTTILKQLASE-DISHITPTQGFNIKT-VQSDGFKLNVWDIGGQRA----------IRPYWRNY--   78 (173)
T ss_pred             CccEEEEEccCCCCHHHHHHHHhcC-CCcccCCCCCcceEE-EEECCEEEEEEECCCCHH----------HHHHHHHH--
Confidence            3578999999999999999999987 333333444433222 122366789999999621          11122222  


Q ss_pred             cccccceEEEEEeCCCCCCcc--hHHHHHHH---HhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEe
Q 024325          171 TRVSLKRVCLLIDTKWGVKPR--DHELISLM---ERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV  245 (269)
Q Consensus       171 ~~~~~d~vl~vid~~~~~~~~--~~~~~~~l---~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v  245 (269)
                       ...+|++++|+|+.......  ...+...+   ...++|+++++||+|+..........+.+.  +........+++++
T Consensus        79 -~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~--~~~~~~~~~~~~~~  155 (173)
T cd04155          79 -FENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALN--LHDLRDRTWHIQAC  155 (173)
T ss_pred             -hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcC--CcccCCCeEEEEEe
Confidence             23489999999987421111  11222222   224689999999999976543333222211  11111112357899


Q ss_pred             eCCCCCCHHHHHHHHHH
Q 024325          246 SSKSGAGIRSLRTVLSK  262 (269)
Q Consensus       246 Sa~~g~gi~~L~~~i~~  262 (269)
                      ||++|+|++++++||.+
T Consensus       156 Sa~~~~gi~~~~~~l~~  172 (173)
T cd04155         156 SAKTGEGLQEGMNWVCK  172 (173)
T ss_pred             ECCCCCCHHHHHHHHhc
Confidence            99999999999999975

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd04175 Rap1 Rap1 subgroup

Probab=99.85  E-value=2.4e-20  Score=147.56  Aligned_cols=151  Identities=13%  Similarity=0.082  Sum_probs=96.5

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEEe--CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      .+|+++|.+|+|||||+++++..   .....+++|+.+..   +...  ...+.+|||||...          +..+...
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~~~---~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~   68 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQG---IFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ----------FTAMRDL   68 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhC---CCCcccCCcchheEEEEEEECCEEEEEEEEECCCccc----------chhHHHH
Confidence            47999999999999999999865   23444555554321   1111  33567999999632          2233333


Q ss_pred             HHhcccccceEEEEEeCCCCCCcch-HHHHHHHH----hhCCcEEEEEecCCCCCchHHHH-HHHHHHHHHHhcCCCCCC
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFPIDVAR-RAMQIEESLKANNSLVQP  241 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~----~~~~p~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~  241 (269)
                      ++..   +|++++|+|.+...+... ..++..+.    ..+.|+++|+||+|+........ ....+.+   .   ...+
T Consensus        69 ~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---~---~~~~  139 (164)
T cd04175          69 YMKN---GQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR---Q---WGCA  139 (164)
T ss_pred             HHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHH---H---hCCE
Confidence            4333   899999999864322221 12333332    23589999999999975322111 1112211   1   1368


Q ss_pred             eEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          242 VMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       242 vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      ++++||++|.|+++++.+|.+.+.
T Consensus       140 ~~~~Sa~~~~~v~~~~~~l~~~l~  163 (164)
T cd04175         140 FLETSAKAKINVNEIFYDLVRQIN  163 (164)
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHhh
Confidence            999999999999999999987664

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.85  E-value=3.8e-20  Score=142.97  Aligned_cols=140  Identities=19%  Similarity=0.210  Sum_probs=89.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhccc
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV  173 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (269)
                      +|+++|.+|+|||||+|+|++.. ..    ++ .|..+.+.     -.+|||||....     ....+..+.    ....
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~-~~----~~-~t~~~~~~-----~~~iDt~G~~~~-----~~~~~~~~~----~~~~   61 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEE-IL----YK-KTQAVEYN-----DGAIDTPGEYVE-----NRRLYSALI----VTAA   61 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCc-cc----cc-cceeEEEc-----CeeecCchhhhh-----hHHHHHHHH----HHhh
Confidence            69999999999999999999873 21    11 12222221     168999996210     111122222    2244


Q ss_pred             ccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCH
Q 024325          174 SLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGI  253 (269)
Q Consensus       174 ~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi  253 (269)
                      .+|++++|+|+..+.+..+..+.+.   ...|+++|+||+|+.+.....+   ...+.....  ...+++++||++|.|+
T Consensus        62 ~ad~vilv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~---~~~~~~~~~--~~~~~~~~Sa~~~~gi  133 (142)
T TIGR02528        62 DADVIALVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLAEADVDIE---RAKELLETA--GAEPIFEISSVDEQGL  133 (142)
T ss_pred             cCCEEEEEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccCCcccCHH---HHHHHHHHc--CCCcEEEEecCCCCCH
Confidence            5999999999987665554444433   2459999999999975322111   112222221  1247999999999999


Q ss_pred             HHHHHHHH
Q 024325          254 RSLRTVLS  261 (269)
Q Consensus       254 ~~L~~~i~  261 (269)
                      ++++++|.
T Consensus       134 ~~l~~~l~  141 (142)
T TIGR02528       134 EALVDYLN  141 (142)
T ss_pred             HHHHHHHh
Confidence            99999874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.85  E-value=7.6e-20  Score=170.15  Aligned_cols=157  Identities=22%  Similarity=0.331  Sum_probs=105.9

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCC-ceeEeeEEEe---------------------CCcEEEEcCCCCC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG-LTQTINFFKL---------------------GTKLCLVDLPGYG  149 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~g-tt~~~~~~~~---------------------~~~~~lvDtpG~~  149 (269)
                      .|.|+++|++|+|||||+|+|++. .  .....+| +|++......                     ...+.+|||||+.
T Consensus         4 ~piV~IiG~~d~GKTSLln~l~~~-~--v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e   80 (590)
T TIGR00491         4 SPIVSVLGHVDHGKTTLLDKIRGS-A--VAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHE   80 (590)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcc-c--cccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcH
Confidence            589999999999999999999987 2  2333333 5554321110                     0238899999962


Q ss_pred             CcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchH---------
Q 024325          150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID---------  220 (269)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~---------  220 (269)
                      .          +..+...+   ...+|++++|+|+..+...++.+.+..+...++|+++|+||+|+.+...         
T Consensus        81 ~----------f~~l~~~~---~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e  147 (590)
T TIGR00491        81 A----------FTNLRKRG---GALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFME  147 (590)
T ss_pred             h----------HHHHHHHH---HhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHHH
Confidence            1          22222222   2349999999999988888888888888888999999999999974210         


Q ss_pred             -----HHHHHHH-------HHHHHHhc------------CCCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325          221 -----VARRAMQ-------IEESLKAN------------NSLVQPVMMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       221 -----~~~~~~~-------~~~~~~~~------------~~~~~~vi~vSa~~g~gi~~L~~~i~~~~  264 (269)
                           .......       +...+...            .....+++++||++|+|+++|+++|....
T Consensus       148 ~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~  215 (590)
T TIGR00491       148 SFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA  215 (590)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence                 0000001       01111111            12247899999999999999999986543

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>cd01861 Rab6 Rab6 subfamily

Probab=99.85  E-value=7.7e-20  Score=143.96  Aligned_cols=149  Identities=17%  Similarity=0.207  Sum_probs=97.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE--EEe-C--CcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~--~~~-~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      +|+++|++|+|||||+|++++.. . ..+..++++.+...  ... +  ..+.+|||||...          +..+...+
T Consensus         2 ki~liG~~~~GKSsli~~l~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~----------~~~~~~~~   69 (161)
T cd01861           2 KLVFLGDQSVGKTSIITRFMYDT-F-DNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQER----------FRSLIPSY   69 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC-C-CccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHH----------HHHHHHHH
Confidence            69999999999999999999873 2 33455666655422  111 2  3588999999521          22333344


Q ss_pred             HhcccccceEEEEEeCCCCCCcch-HHHHHHHH-hh--CCcEEEEEecCCCCCchHH-HHHHHHHHHHHHhcCCCCCCeE
Q 024325          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLME-RS--QTKYQVVLTKTDTVFPIDV-ARRAMQIEESLKANNSLVQPVM  243 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~-~~--~~p~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~vi  243 (269)
                      +.   .+|++++|+|.+.+.+..+ ..++..+. ..  +.|+++|+||+|+...... ......+.   ..   ...+++
T Consensus        70 ~~---~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~---~~---~~~~~~  140 (161)
T cd01861          70 IR---DSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKA---KE---LNAMFI  140 (161)
T ss_pred             hc---cCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHH---HH---hCCEEE
Confidence            33   3899999999875322222 23333332 23  3899999999999643221 11111111   11   147799


Q ss_pred             EeeCCCCCCHHHHHHHHHHh
Q 024325          244 MVSSKSGAGIRSLRTVLSKI  263 (269)
Q Consensus       244 ~vSa~~g~gi~~L~~~i~~~  263 (269)
                      ++||++|.|+++++++|.+.
T Consensus       141 ~~Sa~~~~~v~~l~~~i~~~  160 (161)
T cd01861         141 ETSAKAGHNVKELFRKIASA  160 (161)
T ss_pred             EEeCCCCCCHHHHHHHHHHh
Confidence            99999999999999999875

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.85  E-value=5.4e-20  Score=145.12  Aligned_cols=151  Identities=16%  Similarity=0.198  Sum_probs=91.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee-EEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcc
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR  172 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~-~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~  172 (269)
                      +|+++|.+|+|||||++++... ..  .+..|.+..+.. .......+.+|||||...          +..+...|+.  
T Consensus         2 kv~~~G~~~~GKTsli~~l~~~-~~--~~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~----------~~~~~~~~~~--   66 (159)
T cd04150           2 RILMVGLDAAGKTTILYKLKLG-EI--VTTIPTIGFNVETVEYKNISFTVWDVGGQDK----------IRPLWRHYFQ--   66 (159)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC-CC--cccCCCCCcceEEEEECCEEEEEEECCCCHh----------HHHHHHHHhc--
Confidence            6999999999999999999655 22  222222222221 222356789999999732          1222233333  


Q ss_pred             cccceEEEEEeCCCCCC--cchHHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeC
Q 024325          173 VSLKRVCLLIDTKWGVK--PRDHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS  247 (269)
Q Consensus       173 ~~~d~vl~vid~~~~~~--~~~~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa  247 (269)
                       .+|++++|+|++....  .....+...+..   ...|+++|+||+|+.......+....+.  +.........++++||
T Consensus        67 -~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~--~~~~~~~~~~~~~~Sa  143 (159)
T cd04150          67 -NTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLG--LHSLRNRNWYIQATCA  143 (159)
T ss_pred             -CCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhC--ccccCCCCEEEEEeeC
Confidence             3999999999875321  111223333322   2589999999999965422222222110  1111122345789999


Q ss_pred             CCCCCHHHHHHHHHH
Q 024325          248 KSGAGIRSLRTVLSK  262 (269)
Q Consensus       248 ~~g~gi~~L~~~i~~  262 (269)
                      ++|.|+++++++|.+
T Consensus       144 k~g~gv~~~~~~l~~  158 (159)
T cd04150         144 TSGDGLYEGLDWLSN  158 (159)
T ss_pred             CCCCCHHHHHHHHhc
Confidence            999999999999864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.84  E-value=1.9e-19  Score=151.87  Aligned_cols=175  Identities=25%  Similarity=0.305  Sum_probs=121.5

Q ss_pred             hhHHHhh-hccCCCCC--CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe---CCcEEEEcCCCC
Q 024325           75 LEFFAAA-KVSSSFPA--PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGY  148 (269)
Q Consensus        75 ~~~~~~~-~~~~~~~~--~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~---~~~~~lvDtpG~  148 (269)
                      ++++... ...+.+|.  .+.|.|++.|+||+|||||++.+++..  ..+.+||+||..++..+.   ...++++||||+
T Consensus       148 L~fL~~~r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~Ak--pEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGl  225 (346)
T COG1084         148 LEFLRKARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAK--PEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGL  225 (346)
T ss_pred             HHHHHHHHHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCC--CccCCCCccccceeEeeeecCCceEEEecCCcc
Confidence            3444333 34566665  478999999999999999999999984  679999999999865443   458999999999


Q ss_pred             CCcchh--HHHHHHHHHHHHHHHhcccccceEEEEEeCCCCC--Ccc-hHHHHHHHHh-hCCcEEEEEecCCCCCchHHH
Q 024325          149 GFAYAK--EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV--KPR-DHELISLMER-SQTKYQVVLTKTDTVFPIDVA  222 (269)
Q Consensus       149 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~--~~~-~~~~~~~l~~-~~~p~iiv~NK~Dl~~~~~~~  222 (269)
                      -+....  +.++.  .    ...+-....++|+|++|++...  +-. ...+++.+.. ...|+++|+||+|..+.+..+
T Consensus       226 LDRPl~ErN~IE~--q----Ai~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e~~~  299 (346)
T COG1084         226 LDRPLEERNEIER--Q----AILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEEKLE  299 (346)
T ss_pred             cCCChHHhcHHHH--H----HHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchhHHH
Confidence            764222  22211  1    1111112268899999998533  222 2455555554 457999999999999877766


Q ss_pred             HHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHh
Q 024325          223 RRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI  263 (269)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~  263 (269)
                      +....+...      .......+|+..+.+++.+.+.+...
T Consensus       300 ~~~~~~~~~------~~~~~~~~~~~~~~~~d~~~~~v~~~  334 (346)
T COG1084         300 EIEASVLEE------GGEEPLKISATKGCGLDKLREEVRKT  334 (346)
T ss_pred             HHHHHHHhh------ccccccceeeeehhhHHHHHHHHHHH
Confidence            655443322      12335789999999999998887765

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.84  E-value=4.9e-20  Score=174.20  Aligned_cols=159  Identities=21%  Similarity=0.327  Sum_probs=112.2

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE-------eCCcEEEEcCCCCCCcchhHHHHHHHH
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-------LGTKLCLVDLPGYGFAYAKEEVKDAWE  162 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~-------~~~~~~lvDtpG~~~~~~~~~~~~~~~  162 (269)
                      ...|.|+++|++|+|||||+++|.+..  ...+..+|+|.++..+.       .+..+.||||||+.          .+.
T Consensus       242 ~r~p~V~IvGhvdvGKTSLld~L~~~~--~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe----------~F~  309 (742)
T CHL00189        242 NRPPIVTILGHVDHGKTTLLDKIRKTQ--IAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHE----------AFS  309 (742)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHhcc--CccccCCccccccceEEEEEEecCCceEEEEEECCcHH----------HHH
Confidence            356899999999999999999999863  22344566776643221       24679999999962          222


Q ss_pred             HHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHH--HHhcCCCCC
Q 024325          163 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEES--LKANNSLVQ  240 (269)
Q Consensus       163 ~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~  240 (269)
                      .+...+   ...+|++++|+|+..+...+..+.+..+...++|+++|+||+|+.... .....+.+...  +........
T Consensus       310 ~mr~rg---~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~-~e~v~~eL~~~~ll~e~~g~~v  385 (742)
T CHL00189        310 SMRSRG---ANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANAN-TERIKQQLAKYNLIPEKWGGDT  385 (742)
T ss_pred             HHHHHH---HHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccC-HHHHHHHHHHhccchHhhCCCc
Confidence            333222   234999999999998888887788888888899999999999997532 22222222211  111112246


Q ss_pred             CeEEeeCCCCCCHHHHHHHHHHhh
Q 024325          241 PVMMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       241 ~vi~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      |++++||++|.|+++|+++|....
T Consensus       386 pvv~VSAktG~GIdeLle~I~~l~  409 (742)
T CHL00189        386 PMIPISASQGTNIDKLLETILLLA  409 (742)
T ss_pred             eEEEEECCCCCCHHHHHHhhhhhh
Confidence            899999999999999999997654

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.84  E-value=8.5e-20  Score=170.10  Aligned_cols=156  Identities=21%  Similarity=0.293  Sum_probs=110.9

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe---CC-cEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GT-KLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~---~~-~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      ..|.|+++|++|+|||||+++|.+. .+ .....+|+|.+...+..   +. .+.||||||+..          +..+. 
T Consensus        86 r~p~V~I~Ghvd~GKTSLl~~l~~~-~v-~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~----------F~~~r-  152 (587)
T TIGR00487        86 RPPVVTIMGHVDHGKTSLLDSIRKT-KV-AQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEA----------FTSMR-  152 (587)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhC-Cc-ccccCCceeecceEEEEEECCCcEEEEEECCCCcc----------hhhHH-
Confidence            4589999999999999999999987 33 33455778887653322   33 799999999732          11222 


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHH--HHhcCCCCCCeEE
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEES--LKANNSLVQPVMM  244 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~~vi~  244 (269)
                        .+....+|++++|+|+.++..++..+.+..+...++|+++++||+|+.... .....+.+...  .........++++
T Consensus       153 --~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~-~e~v~~~L~~~g~~~~~~~~~~~~v~  229 (587)
T TIGR00487       153 --ARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEAN-PDRVKQELSEYGLVPEDWGGDTIFVP  229 (587)
T ss_pred             --HhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCC-HHHHHHHHHHhhhhHHhcCCCceEEE
Confidence              233445999999999998887887777877777889999999999996432 22222222211  1111112357999


Q ss_pred             eeCCCCCCHHHHHHHHHH
Q 024325          245 VSSKSGAGIRSLRTVLSK  262 (269)
Q Consensus       245 vSa~~g~gi~~L~~~i~~  262 (269)
                      +||++|+|+++|+++|..
T Consensus       230 iSAktGeGI~eLl~~I~~  247 (587)
T TIGR00487       230 VSALTGDGIDELLDMILL  247 (587)
T ss_pred             EECCCCCChHHHHHhhhh
Confidence            999999999999999864

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.84  E-value=1.9e-19  Score=149.49  Aligned_cols=113  Identities=19%  Similarity=0.240  Sum_probs=87.8

Q ss_pred             CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhccc--ccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCC
Q 024325          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV--SLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD  214 (269)
Q Consensus       137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~D  214 (269)
                      +..+.++||||..             .+.......+.  .+|.+++|+|+..+....+.+++.++...++|+++|+||+|
T Consensus        83 ~~~i~liDtpG~~-------------~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D  149 (224)
T cd04165          83 SKLVTFIDLAGHE-------------RYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKID  149 (224)
T ss_pred             CcEEEEEECCCcH-------------HHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECcc
Confidence            5679999999972             22222333332  48999999999988888899999999999999999999999


Q ss_pred             CCCchHHHHHHHHHHHHHHh-----------------------cCCCCCCeEEeeCCCCCCHHHHHHHHHH
Q 024325          215 TVFPIDVARRAMQIEESLKA-----------------------NNSLVQPVMMVSSKSGAGIRSLRTVLSK  262 (269)
Q Consensus       215 l~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~vi~vSa~~g~gi~~L~~~i~~  262 (269)
                      +.+..........+.+.+..                       ......|+|++||.+|+|+++|...|..
T Consensus       150 ~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~  220 (224)
T cd04165         150 LAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL  220 (224)
T ss_pred             ccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence            98776666666666665541                       1122459999999999999999998864

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.84  E-value=8.1e-20  Score=146.40  Aligned_cols=156  Identities=16%  Similarity=0.164  Sum_probs=95.3

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee-EEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHh
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~-~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~  170 (269)
                      .++|+++|.+|+|||||++++... ..  ....|.+..+.. ....+..+.+|||||...          +..+...|+.
T Consensus        13 ~~ki~l~G~~~~GKTsL~~~~~~~-~~--~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~----------~~~~~~~~~~   79 (175)
T smart00177       13 EMRILMVGLDAAGKTTILYKLKLG-ES--VTTIPTIGFNVETVTYKNISFTVWDVGGQDK----------IRPLWRHYYT   79 (175)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHhcC-CC--CCcCCccccceEEEEECCEEEEEEECCCChh----------hHHHHHHHhC
Confidence            468999999999999999999754 21  222232222222 112356789999999632          1223333333


Q ss_pred             cccccceEEEEEeCCCCCCc--chHHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEe
Q 024325          171 TRVSLKRVCLLIDTKWGVKP--RDHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV  245 (269)
Q Consensus       171 ~~~~~d~vl~vid~~~~~~~--~~~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v  245 (269)
                         .+|++++|+|++.....  ....+...+..   .+.|+++|+||+|+.......+....+.  +.........++++
T Consensus        80 ---~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~--~~~~~~~~~~~~~~  154 (175)
T smart00177       80 ---NTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLG--LHSIRDRNWYIQPT  154 (175)
T ss_pred             ---CCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhC--ccccCCCcEEEEEe
Confidence               39999999998753211  11222222222   2579999999999975432222222111  11111122346789


Q ss_pred             eCCCCCCHHHHHHHHHHhhh
Q 024325          246 SSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       246 Sa~~g~gi~~L~~~i~~~~~  265 (269)
                      ||++|+|++++++||.+.+.
T Consensus       155 Sa~~g~gv~e~~~~l~~~~~  174 (175)
T smart00177      155 CATSGDGLYEGLTWLSNNLK  174 (175)
T ss_pred             eCCCCCCHHHHHHHHHHHhc
Confidence            99999999999999987653

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=99.84  E-value=3.8e-21  Score=161.26  Aligned_cols=228  Identities=15%  Similarity=0.129  Sum_probs=145.4

Q ss_pred             chhhhhhhhcCCCchhhHHHHHhcCCCcceeeeeccccccccCCCCCCCCCCChhhhhhhhh-h--hhchhhhHHHhhh-
Q 024325            7 MSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEE-N--IFRNKLEFFAAAK-   82 (269)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~-~--~~~~~~~~~~~~~-   82 (269)
                      +.+......+|+-.+..+|..+|+..-+.++....  .+. +-++++.   ..+.+.+++.+ +  .++..++.+...+ 
T Consensus        95 q~a~T~earlqvalAempy~~~rl~r~~~hl~r~~--g~~-v~gsges---~id~d~~rllr~kea~lrKeL~~vrrkr~  168 (410)
T KOG0410|consen   95 QEAVTAEARLQVALAEMPYVGGRLERELQHLRRQS--GGQ-VKGSGES---IIDRDIRRLLRIKEAQLRKELQRVRRKRQ  168 (410)
T ss_pred             HHhhhHHHHHhhhhhcCccccchHHHHHHHHHhcC--CCc-ccCccch---HhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33444555688889999999999955444433333  222 3444432   22222222222 1  1222222222222 


Q ss_pred             ccCCCCCCCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee----EEEeCCcEEEEcCCCCCCcchhHHHH
Q 024325           83 VSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN----FFKLGTKLCLVDLPGYGFAYAKEEVK  158 (269)
Q Consensus        83 ~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~----~~~~~~~~~lvDtpG~~~~~~~~~~~  158 (269)
                      .+.++.....|.|++||++|||||||+++|++. . ....+.-+.|.|..    ....|..+.+.||-||..        
T Consensus       169 ~r~gr~~~s~pviavVGYTNaGKsTLikaLT~A-a-l~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFis--------  238 (410)
T KOG0410|consen  169 RRVGREGESSPVIAVVGYTNAGKSTLIKALTKA-A-LYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFIS--------  238 (410)
T ss_pred             hhhccccCCCceEEEEeecCccHHHHHHHHHhh-h-cCccchhheeccchhhhccCCCCcEEEEeechhhhh--------
Confidence            235555677899999999999999999999965 2 33444445555543    223477899999999954        


Q ss_pred             HHHHHHHHHHHhccc---ccceEEEEEeCCCCCCcch-HHHHHHHHhhCCc-------EEEEEecCCCCCchHHHHHHHH
Q 024325          159 DAWEELVKEYVSTRV---SLKRVCLLIDTKWGVKPRD-HELISLMERSQTK-------YQVVLTKTDTVFPIDVARRAMQ  227 (269)
Q Consensus       159 ~~~~~~~~~~~~~~~---~~d~vl~vid~~~~~~~~~-~~~~~~l~~~~~p-------~iiv~NK~Dl~~~~~~~~~~~~  227 (269)
                      +++..++..|.++++   .+|++++|+|.+++..... ..++..+.+.++|       ++-|.||+|.-+..-..     
T Consensus       239 dLP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~-----  313 (410)
T KOG0410|consen  239 DLPIQLVAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEE-----  313 (410)
T ss_pred             hCcHHHHHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCcc-----
Confidence            344556666666554   4899999999998655443 4567777776664       67899999976432110     


Q ss_pred             HHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          228 IEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       228 ~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                                .....+.+||++|.|++++++.+...+.
T Consensus       314 ----------E~n~~v~isaltgdgl~el~~a~~~kv~  341 (410)
T KOG0410|consen  314 ----------EKNLDVGISALTGDGLEELLKAEETKVA  341 (410)
T ss_pred             ----------ccCCccccccccCccHHHHHHHHHHHhh
Confidence                      0122689999999999999999877653

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.84  E-value=1.2e-19  Score=147.71  Aligned_cols=149  Identities=24%  Similarity=0.261  Sum_probs=96.4

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCC---------------CCCceeEee---EEEeCCcEEEEcCCCCCCcchh
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSD---------------KPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAK  154 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~---------------~~gtt~~~~---~~~~~~~~~lvDtpG~~~~~~~  154 (269)
                      .+|+++|.+|+|||||+++|++... .+...               ..|+|.+..   +...+..+.+|||||...    
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~-~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~----   77 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSG-TFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHAD----   77 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcC-CCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHH----
Confidence            3799999999999999999986311 11111               134444332   223466789999999732    


Q ss_pred             HHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHh
Q 024325          155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA  234 (269)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~  234 (269)
                            +......++.   .+|.+++|+|+..+.......++..+...++|+++|+||+|+.... .......+.+.+..
T Consensus        78 ------~~~~~~~~~~---~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~-~~~~~~~~~~~~~~  147 (194)
T cd01891          78 ------FGGEVERVLS---MVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDAR-PEEVVDEVFDLFIE  147 (194)
T ss_pred             ------HHHHHHHHHH---hcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCC-HHHHHHHHHHHHHH
Confidence                  1222333333   3999999999987654555555666666789999999999997532 22223333333322


Q ss_pred             c----CCCCCCeEEeeCCCCCCHHHH
Q 024325          235 N----NSLVQPVMMVSSKSGAGIRSL  256 (269)
Q Consensus       235 ~----~~~~~~vi~vSa~~g~gi~~L  256 (269)
                      .    .....+++++||++|.|++++
T Consensus       148 ~~~~~~~~~~~iv~~Sa~~g~~~~~~  173 (194)
T cd01891         148 LGATEEQLDFPVLYASAKNGWASLNL  173 (194)
T ss_pred             hCCccccCccCEEEeehhcccccccc
Confidence            1    123578999999999877554

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.84  E-value=5.8e-20  Score=148.45  Aligned_cols=157  Identities=18%  Similarity=0.189  Sum_probs=95.8

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhc
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST  171 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~  171 (269)
                      .++|+++|.+|||||||+|++.+. ....+.+..+.+.. .....+..+.++||||...          +..+...|+  
T Consensus        17 ~~~i~ivG~~~~GKTsli~~l~~~-~~~~~~~t~~~~~~-~~~~~~~~~~~~D~~G~~~----------~~~~~~~~~--   82 (184)
T smart00178       17 HAKILFLGLDNAGKTTLLHMLKND-RLAQHQPTQHPTSE-ELAIGNIKFTTFDLGGHQQ----------ARRLWKDYF--   82 (184)
T ss_pred             cCEEEEECCCCCCHHHHHHHHhcC-CCcccCCccccceE-EEEECCEEEEEEECCCCHH----------HHHHHHHHh--
Confidence            468999999999999999999987 33332222222211 1112356789999999732          112223333  


Q ss_pred             ccccceEEEEEeCCCCCC--cchHHHHHHHH---hhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHh-----cCCCCCC
Q 024325          172 RVSLKRVCLLIDTKWGVK--PRDHELISLME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA-----NNSLVQP  241 (269)
Q Consensus       172 ~~~~d~vl~vid~~~~~~--~~~~~~~~~l~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~-----~~~~~~~  241 (269)
                       ..+|++++|+|++....  .....+.+.+.   ..+.|+++|+||+|+.......+....+.-....     .......
T Consensus        83 -~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~  161 (184)
T smart00178       83 -PEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLE  161 (184)
T ss_pred             -CCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeE
Confidence             34999999999975311  11112222222   2468999999999986433333222222100000     0011345


Q ss_pred             eEEeeCCCCCCHHHHHHHHHHh
Q 024325          242 VMMVSSKSGAGIRSLRTVLSKI  263 (269)
Q Consensus       242 vi~vSa~~g~gi~~L~~~i~~~  263 (269)
                      ++++||++|+|++++++||...
T Consensus       162 i~~~Sa~~~~g~~~~~~wl~~~  183 (184)
T smart00178      162 VFMCSVVRRMGYGEGFKWLSQY  183 (184)
T ss_pred             EEEeecccCCChHHHHHHHHhh
Confidence            8999999999999999999764

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.84  E-value=8.7e-20  Score=147.26  Aligned_cols=156  Identities=15%  Similarity=0.131  Sum_probs=93.8

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe---eEEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~---~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      .+|+++|.+|+|||||++++++.. .  +...|....+.   ....   .+..+.+|||||...          +..+..
T Consensus         4 ~kv~~vG~~~~GKTsli~~~~~~~-~--~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~----------~~~~~~   70 (183)
T cd04152           4 LHIVMLGLDSAGKTTVLYRLKFNE-F--VNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEK----------LRPLWK   70 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCC-c--CCcCCccccceeEEEeeccCCCceEEEEEECCCcHh----------HHHHHH
Confidence            589999999999999999998762 2  23333221111   1111   245689999999621          122222


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcch-HH----HHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCC
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HE----LISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP  241 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~----~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (269)
                      .++   ..+|++++|+|++....... ..    +.......++|+++|+||+|+..........+.+. ..........+
T Consensus        71 ~~~---~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~-~~~~~~~~~~~  146 (183)
T cd04152          71 SYT---RCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLA-LHELSASTPWH  146 (183)
T ss_pred             HHh---ccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhC-ccccCCCCceE
Confidence            332   23999999999875321111 11    22222334689999999999864322222111110 00000111246


Q ss_pred             eEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          242 VMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       242 vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      ++++||++|+|+++++++|.+.+.
T Consensus       147 ~~~~SA~~~~gi~~l~~~l~~~l~  170 (183)
T cd04152         147 VQPACAIIGEGLQEGLEKLYEMIL  170 (183)
T ss_pred             EEEeecccCCCHHHHHHHHHHHHH
Confidence            889999999999999999987764

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.84  E-value=5.9e-20  Score=145.14  Aligned_cols=151  Identities=15%  Similarity=0.083  Sum_probs=94.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee--EEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~--~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      +|+++|++|+|||||+|++++..   ....+.+|+.+..  ...   ....+.+|||||....          ..+...+
T Consensus         2 ki~v~G~~~~GKTsli~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~----------~~~~~~~   68 (164)
T smart00173        2 KLVVLGSGGVGKSALTIQFVQGH---FVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEF----------SAMRDQY   68 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc---CCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccc----------hHHHHHH
Confidence            79999999999999999999862   2333334443321  111   1245779999996431          2222333


Q ss_pred             HhcccccceEEEEEeCCCCCCcch-HHHHHHHH----hhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeE
Q 024325          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM  243 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~----~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi  243 (269)
                      +.   .+|.+++|+|+....+... ..+...+.    ..+.|+++|+||+|+........  .........   ...+++
T Consensus        69 ~~---~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~--~~~~~~~~~---~~~~~~  140 (164)
T smart00173       69 MR---TGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVST--EEGKELARQ---WGCPFL  140 (164)
T ss_pred             Hh---hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcH--HHHHHHHHH---cCCEEE
Confidence            33   3899999999875322111 12222222    23689999999999975322111  111111111   147899


Q ss_pred             EeeCCCCCCHHHHHHHHHHhhh
Q 024325          244 MVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       244 ~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      ++||++|.|+++++++|.+.+.
T Consensus       141 ~~Sa~~~~~i~~l~~~l~~~~~  162 (164)
T smart00173      141 ETSAKERVNVDEAFYDLVREIR  162 (164)
T ss_pred             EeecCCCCCHHHHHHHHHHHHh
Confidence            9999999999999999987764

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04158 ARD1 ARD1 subfamily

Probab=99.84  E-value=4.3e-20  Score=147.09  Aligned_cols=155  Identities=17%  Similarity=0.168  Sum_probs=93.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee-EEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcc
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR  172 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~-~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~  172 (269)
                      +|+++|.+|+|||||++++.+. .  .....|.+..+.. +...+..+.+|||||....          ..+...++   
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~-~--~~~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~----------~~~~~~~~---   64 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQD-E--FMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKL----------RPLWKHYY---   64 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcC-C--CCCcCCcCceeEEEEEECCEEEEEEECCCChhc----------chHHHHHh---
Confidence            4899999999999999999987 2  2222222212222 2223567899999997421          11122222   


Q ss_pred             cccceEEEEEeCCCCC--CcchHHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeC
Q 024325          173 VSLKRVCLLIDTKWGV--KPRDHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS  247 (269)
Q Consensus       173 ~~~d~vl~vid~~~~~--~~~~~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa  247 (269)
                      ..+|++++|+|.+...  ......+...+..   .+.|+++|+||+|+..........+.+ ...........+++++||
T Consensus        65 ~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Sa  143 (169)
T cd04158          65 LNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELL-SLHKLCCGRSWYIQGCDA  143 (169)
T ss_pred             ccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHh-CCccccCCCcEEEEeCcC
Confidence            2389999999987532  1111222223322   247999999999997543322222211 100000011235788999


Q ss_pred             CCCCCHHHHHHHHHHhhh
Q 024325          248 KSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       248 ~~g~gi~~L~~~i~~~~~  265 (269)
                      ++|.|+++++++|.+.+.
T Consensus       144 ~~g~gv~~~f~~l~~~~~  161 (169)
T cd04158         144 RSGMGLYEGLDWLSRQLV  161 (169)
T ss_pred             CCCCCHHHHHHHHHHHHh
Confidence            999999999999987654

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd01864 Rab19 Rab19 subfamily

Probab=99.84  E-value=2.1e-19  Score=142.30  Aligned_cols=154  Identities=18%  Similarity=0.208  Sum_probs=94.7

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccc-cCCCCCceeEeeEEEe-C--CcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVR-TSDKPGLTQTINFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~-~s~~~gtt~~~~~~~~-~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      .++|+++|++|+|||||++++.+.. ... ..+..++......... +  ..+.+|||||..          .+..+...
T Consensus         3 ~~kv~vvG~~~~GKTsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~----------~~~~~~~~   71 (165)
T cd01864           3 LFKIILIGDSNVGKTCVVQRFKSGT-FSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQE----------RFRTITQS   71 (165)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhhCC-CcccCCCccceEEEEEEEEECCEEEEEEEEECCChH----------HHHHHHHH
Confidence            3689999999999999999998752 111 1111111112222222 2  468999999951          12233333


Q ss_pred             HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeE
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM  243 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi  243 (269)
                      ++.   .+|++++|+|++....... ..++..+..   .+.|+++|+||+|+....+..  ...........  ...+++
T Consensus        72 ~~~---~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~--~~~~~~  144 (165)
T cd01864          72 YYR---SANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVL--FEEACTLAEKN--GMLAVL  144 (165)
T ss_pred             Hhc---cCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccC--HHHHHHHHHHc--CCcEEE
Confidence            333   3899999999975432222 234444433   367999999999997543211  01111111211  124689


Q ss_pred             EeeCCCCCCHHHHHHHHHHh
Q 024325          244 MVSSKSGAGIRSLRTVLSKI  263 (269)
Q Consensus       244 ~vSa~~g~gi~~L~~~i~~~  263 (269)
                      ++||++|.|+++++++|.+.
T Consensus       145 e~Sa~~~~~v~~~~~~l~~~  164 (165)
T cd01864         145 ETSAKESQNVEEAFLLMATE  164 (165)
T ss_pred             EEECCCCCCHHHHHHHHHHh
Confidence            99999999999999999764

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.84  E-value=6.8e-20  Score=166.36  Aligned_cols=151  Identities=21%  Similarity=0.225  Sum_probs=105.6

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccc------------------------cC------CCCCceeEeeEEE---eC
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVR------------------------TS------DKPGLTQTINFFK---LG  137 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~------------------------~s------~~~gtt~~~~~~~---~~  137 (269)
                      ...+|+++|++|+|||||+++|+.... ..                        +.      ..+|+|.+..+..   .+
T Consensus         5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g-~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~   83 (425)
T PRK12317          5 PHLNLAVIGHVDHGKSTLVGRLLYETG-AIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK   83 (425)
T ss_pred             CEEEEEEECCCCCChHHHHHHHHHHcC-CcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence            457899999999999999999985421 11                        11      1578999986544   36


Q ss_pred             CcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCC--CCCcchHHHHHHHHhhCC-cEEEEEecCC
Q 024325          138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW--GVKPRDHELISLMERSQT-KYQVVLTKTD  214 (269)
Q Consensus       138 ~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~--~~~~~~~~~~~~l~~~~~-p~iiv~NK~D  214 (269)
                      ..+.+|||||+..             +...+......+|++++|+|+..  +...++.+.+..+...+. |+++|+||+|
T Consensus        84 ~~i~liDtpG~~~-------------~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~D  150 (425)
T PRK12317         84 YYFTIVDCPGHRD-------------FVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMD  150 (425)
T ss_pred             eEEEEEECCCccc-------------chhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccc
Confidence            7899999999632             12223333455999999999987  666777777777766665 6899999999


Q ss_pred             CCCch--HHHHHHHHHHHHHHhcCC--CCCCeEEeeCCCCCCHHH
Q 024325          215 TVFPI--DVARRAMQIEESLKANNS--LVQPVMMVSSKSGAGIRS  255 (269)
Q Consensus       215 l~~~~--~~~~~~~~~~~~~~~~~~--~~~~vi~vSa~~g~gi~~  255 (269)
                      +....  ......+.+.+.+.....  ...+++++||++|+|+++
T Consensus       151 l~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~  195 (425)
T PRK12317        151 AVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVK  195 (425)
T ss_pred             cccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccc
Confidence            97522  223334445444433221  136799999999999987

>cd01893 Miro1 Miro1 subfamily

Probab=99.84  E-value=1.3e-19  Score=143.82  Aligned_cols=155  Identities=14%  Similarity=0.123  Sum_probs=96.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCce----eEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT----QTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt----~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~  169 (269)
                      +|+++|.+|+|||||+|++.+.. .  ...++.+.    ....+......+.+|||||....          ......+ 
T Consensus         2 kv~ivG~~~vGKTsl~~~l~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~-   67 (166)
T cd01893           2 RIVLIGDEGVGKSSLIMSLVSEE-F--PENVPRVLPEITIPADVTPERVPTTIVDTSSRPQD----------RANLAAE-   67 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc-C--CccCCCcccceEeeeeecCCeEEEEEEeCCCchhh----------hHHHhhh-
Confidence            69999999999999999998863 2  22333332    22222223456889999997431          1111122 


Q ss_pred             hcccccceEEEEEeCCCCCCcch--HHHHHHHHh--hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEe
Q 024325          170 STRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV  245 (269)
Q Consensus       170 ~~~~~~d~vl~vid~~~~~~~~~--~~~~~~l~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v  245 (269)
                        ...+|++++|+|..++.....  ..++..+..  .+.|+++|+||+|+.+..........+......+.. ..+++++
T Consensus        68 --~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~  144 (166)
T cd01893          68 --IRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFRE-IETCVEC  144 (166)
T ss_pred             --cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhc-ccEEEEe
Confidence              234999999999875433332  234444443  368999999999997654321111111111111111 2478999


Q ss_pred             eCCCCCCHHHHHHHHHHhhh
Q 024325          246 SSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       246 Sa~~g~gi~~L~~~i~~~~~  265 (269)
                      ||++|.|++++++.+...+-
T Consensus       145 Sa~~~~~v~~lf~~~~~~~~  164 (166)
T cd01893         145 SAKTLINVSEVFYYAQKAVL  164 (166)
T ss_pred             ccccccCHHHHHHHHHHHhc
Confidence            99999999999999887653

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.84  E-value=1.5e-19  Score=142.53  Aligned_cols=150  Identities=14%  Similarity=0.055  Sum_probs=95.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE---EE--eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~---~~--~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      +|+++|++|+|||||++++++..   .+..+.+++.+...   ..  .+..+.+|||||...          +..+...+
T Consensus         2 ki~~~G~~~~GKTsl~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~~~   68 (164)
T cd04139           2 KVIVVGAGGVGKSALTLQFMYDE---FVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQED----------YAAIRDNY   68 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC---CccccCCcchhhEEEEEEECCEEEEEEEEECCChhh----------hhHHHHHH
Confidence            79999999999999999999762   33444444433211   11  234689999999632          22333333


Q ss_pred             HhcccccceEEEEEeCCCCCCc--chHHHHHHHHh---hCCcEEEEEecCCCCCch-HHHHHHHHHHHHHHhcCCCCCCe
Q 024325          169 VSTRVSLKRVCLLIDTKWGVKP--RDHELISLMER---SQTKYQVVLTKTDTVFPI-DVARRAMQIEESLKANNSLVQPV  242 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~~~~~--~~~~~~~~l~~---~~~p~iiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~v  242 (269)
                      ++   .++.+++++|...+-..  ....+......   .++|+++|+||+|+.... ........+.+   .   ...++
T Consensus        69 ~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~---~---~~~~~  139 (164)
T cd04139          69 HR---SGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLAR---Q---WGVPY  139 (164)
T ss_pred             hh---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHH---H---hCCeE
Confidence            33   37899999997642111  11222222222   478999999999997621 11111111111   1   14689


Q ss_pred             EEeeCCCCCCHHHHHHHHHHhhh
Q 024325          243 MMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       243 i~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      +++||++|+|+++++++|.+.+.
T Consensus       140 ~~~Sa~~~~gi~~l~~~l~~~~~  162 (164)
T cd04139         140 VETSAKTRQNVEKAFYDLVREIR  162 (164)
T ss_pred             EEeeCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999987664

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.84  E-value=7.9e-20  Score=153.70  Aligned_cols=161  Identities=22%  Similarity=0.231  Sum_probs=117.4

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe---eEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHH
Q 024325           88 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL  164 (269)
Q Consensus        88 ~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~---~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~  164 (269)
                      .+.+--.|+++|+|++|||||+|.|++..  +.+.++++||..+   ...+.|..++++|+||+.+......      ..
T Consensus        59 ~KsGda~v~lVGfPsvGKStLL~~LTnt~--seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~------gr  130 (365)
T COG1163          59 KKSGDATVALVGFPSVGKSTLLNKLTNTK--SEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGR------GR  130 (365)
T ss_pred             eccCCeEEEEEcCCCccHHHHHHHHhCCC--ccccccCceecccccceEeecCceEEEEcCcccccCcccCC------CC
Confidence            34566799999999999999999999985  7899999999886   3556688999999999976533221      11


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCcch----------------------------------------------------
Q 024325          165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD----------------------------------------------------  192 (269)
Q Consensus       165 ~~~~~~~~~~~d~vl~vid~~~~~~~~~----------------------------------------------------  192 (269)
                      -.+.++...+||++++|+|+.......+                                                    
T Consensus       131 G~~vlsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~E  210 (365)
T COG1163         131 GRQVLSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILRE  210 (365)
T ss_pred             cceeeeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHH
Confidence            2345566667999999999864322110                                                    


Q ss_pred             ----------------HHHHHHHHhh--CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHH
Q 024325          193 ----------------HELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIR  254 (269)
Q Consensus       193 ----------------~~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~  254 (269)
                                      .++++.+...  -+|.++|+||+|+.+.++.....+            ..+++++||+.+.|++
T Consensus       211 y~I~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~~------------~~~~v~isa~~~~nld  278 (365)
T COG1163         211 YRIHNADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERLAR------------KPNSVPISAKKGINLD  278 (365)
T ss_pred             hCcccceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHHHh------------ccceEEEecccCCCHH
Confidence                            0111112222  368999999999998655443222            2478999999999999


Q ss_pred             HHHHHHHHhhhhhc
Q 024325          255 SLRTVLSKIARFAK  268 (269)
Q Consensus       255 ~L~~~i~~~~~~~k  268 (269)
                      +|.+.|.+.+...+
T Consensus       279 ~L~e~i~~~L~liR  292 (365)
T COG1163         279 ELKERIWDVLGLIR  292 (365)
T ss_pred             HHHHHHHHhhCeEE
Confidence            99999999887654

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.84  E-value=7.8e-20  Score=143.66  Aligned_cols=152  Identities=17%  Similarity=0.147  Sum_probs=96.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhccc
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV  173 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (269)
                      +|+++|.+|+|||||++++++. ......+..+.+.+. +...+..+.+|||||....          ..+...++.   
T Consensus         1 ki~iiG~~~~GKssli~~~~~~-~~~~~~~t~~~~~~~-~~~~~~~~~i~D~~G~~~~----------~~~~~~~~~---   65 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLG-EVVTTIPTIGFNVET-VEYKNVSFTVWDVGGQDKI----------RPLWKHYYE---   65 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcC-CCCCCCCCcCcceEE-EEECCEEEEEEECCCChhh----------HHHHHHHhc---
Confidence            4899999999999999999998 333333333333322 2223567999999997321          122223332   


Q ss_pred             ccceEEEEEeCCCCCCc--chHHHHHHHH---hhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCC
Q 024325          174 SLKRVCLLIDTKWGVKP--RDHELISLME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSK  248 (269)
Q Consensus       174 ~~d~vl~vid~~~~~~~--~~~~~~~~l~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~  248 (269)
                      .+|++++|+|+..+...  ....+...+.   ..+.|+++|+||+|+.......+..+.+....  ......+++++||+
T Consensus        66 ~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~  143 (158)
T cd00878          66 NTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEK--ILGRRWHIQPCSAV  143 (158)
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhh--ccCCcEEEEEeeCC
Confidence            38999999999753111  1112222222   24689999999999986543333332222110  11234679999999


Q ss_pred             CCCCHHHHHHHHHH
Q 024325          249 SGAGIRSLRTVLSK  262 (269)
Q Consensus       249 ~g~gi~~L~~~i~~  262 (269)
                      +|.|+++++++|..
T Consensus       144 ~~~gv~~~~~~l~~  157 (158)
T cd00878         144 TGDGLDEGLDWLLQ  157 (158)
T ss_pred             CCCCHHHHHHHHhh
Confidence            99999999999865

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.83  E-value=9.3e-20  Score=173.72  Aligned_cols=158  Identities=23%  Similarity=0.307  Sum_probs=113.0

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      ...|.|+++|++|+|||||+++|.+. .+ ..+..+|+|.+...+.   .+..+.||||||+...          ..+..
T Consensus       288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~-~v-~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F----------~~m~~  355 (787)
T PRK05306        288 PRPPVVTIMGHVDHGKTSLLDAIRKT-NV-AAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAF----------TAMRA  355 (787)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhC-Cc-cccccCceeeeccEEEEEECCEEEEEEECCCCccc----------hhHHH
Confidence            35689999999999999999999876 32 3445667777764332   3577999999997431          12222


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHH--HHhcCCCCCCeEE
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEES--LKANNSLVQPVMM  244 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~~vi~  244 (269)
                         .....+|++++|+|+.++...+..+.+..+...++|+++|+||+|+.... .......+.+.  +........++++
T Consensus       356 ---rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~-~e~V~~eL~~~~~~~e~~g~~vp~vp  431 (787)
T PRK05306        356 ---RGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGAN-PDRVKQELSEYGLVPEEWGGDTIFVP  431 (787)
T ss_pred             ---hhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccC-HHHHHHHHHHhcccHHHhCCCceEEE
Confidence               23344899999999998888888888888888899999999999996532 22222222211  1111122478999


Q ss_pred             eeCCCCCCHHHHHHHHHHh
Q 024325          245 VSSKSGAGIRSLRTVLSKI  263 (269)
Q Consensus       245 vSa~~g~gi~~L~~~i~~~  263 (269)
                      +||++|+|+++|+++|...
T Consensus       432 vSAktG~GI~eLle~I~~~  450 (787)
T PRK05306        432 VSAKTGEGIDELLEAILLQ  450 (787)
T ss_pred             EeCCCCCCchHHHHhhhhh
Confidence            9999999999999998753

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.83  E-value=2e-19  Score=142.29  Aligned_cols=150  Identities=17%  Similarity=0.138  Sum_probs=93.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee--EE---EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~--~~---~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      +|+++|.+|+|||||+|++++....  ....|....+..  ..   .....+.+|||||...          +..+...+
T Consensus         2 ki~~vG~~~vGKTsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~~   69 (168)
T cd04119           2 KVISMGNSGVGKSCIIKRYCEGRFV--SKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE----------YLEVRNEF   69 (168)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCC--CCCCCccceeEEEEEEEECCeEEEEEEEECCccHH----------HHHHHHHH
Confidence            7999999999999999999987321  122222222221  11   1245688999999621          12333333


Q ss_pred             HhcccccceEEEEEeCCCCCCcch-HHHHHHHHh--------hCCcEEEEEecCCCCCchHH-HHHHHHHHHHHHhcCCC
Q 024325          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER--------SQTKYQVVLTKTDTVFPIDV-ARRAMQIEESLKANNSL  238 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~--------~~~p~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~  238 (269)
                      +.   .+|++++|+|.++...... ..++..+..        .+.|+++|+||+|+...... ......+   ...   .
T Consensus        70 ~~---~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~---~~~---~  140 (168)
T cd04119          70 YK---DTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLW---AES---K  140 (168)
T ss_pred             hc---cCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHH---HHH---c
Confidence            33   3899999999875322111 233333322        34789999999999742211 1111111   111   1


Q ss_pred             CCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325          239 VQPVMMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       239 ~~~vi~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      ..+++++||++|.|+++++++|.+.+
T Consensus       141 ~~~~~~~Sa~~~~gi~~l~~~l~~~l  166 (168)
T cd04119         141 GFKYFETSACTGEGVNEMFQTLFSSI  166 (168)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            36799999999999999999998764

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.83  E-value=2e-19  Score=144.98  Aligned_cols=156  Identities=15%  Similarity=0.135  Sum_probs=94.6

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee-EEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHh
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~-~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~  170 (269)
                      ..+|+++|.+|+|||||++++.... ..  ...|.+..+.. ....+..+.+|||||...          +..+...|+.
T Consensus        17 ~~kv~lvG~~~vGKTsli~~~~~~~-~~--~~~~T~~~~~~~~~~~~~~~~l~D~~G~~~----------~~~~~~~~~~   83 (182)
T PTZ00133         17 EVRILMVGLDAAGKTTILYKLKLGE-VV--TTIPTIGFNVETVEYKNLKFTMWDVGGQDK----------LRPLWRHYYQ   83 (182)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCC-cc--ccCCccccceEEEEECCEEEEEEECCCCHh----------HHHHHHHHhc
Confidence            3689999999999999999997542 22  22222111111 112356789999999622          1222233333


Q ss_pred             cccccceEEEEEeCCCCC--CcchHHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEe
Q 024325          171 TRVSLKRVCLLIDTKWGV--KPRDHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV  245 (269)
Q Consensus       171 ~~~~~d~vl~vid~~~~~--~~~~~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v  245 (269)
                         .+|++++|+|+++..  ......+.+.+..   ...|+++|+||+|+............+..  ........+++++
T Consensus        84 ---~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~--~~~~~~~~~~~~~  158 (182)
T PTZ00133         84 ---NTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGL--HSVRQRNWYIQGC  158 (182)
T ss_pred             ---CCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCC--CcccCCcEEEEee
Confidence               399999999987421  1112223333332   35799999999998654322222222110  0111112356789


Q ss_pred             eCCCCCCHHHHHHHHHHhhh
Q 024325          246 SSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       246 Sa~~g~gi~~L~~~i~~~~~  265 (269)
                      ||++|.|+++++++|.+.+.
T Consensus       159 Sa~tg~gv~e~~~~l~~~i~  178 (182)
T PTZ00133        159 CATTAQGLYEGLDWLSANIK  178 (182)
T ss_pred             eCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999987654

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.83  E-value=5.4e-19  Score=140.35  Aligned_cols=155  Identities=17%  Similarity=0.120  Sum_probs=95.5

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      .++|+++|++|+|||||++++++..-.....+..+++.......   ....+.+|||||...          +..+...+
T Consensus         3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~----------~~~~~~~~   72 (167)
T cd01867           3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQER----------FRTITTAY   72 (167)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHH----------HHHHHHHH
Confidence            36899999999999999999998731111112222222211111   134688999999521          12223333


Q ss_pred             HhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEE
Q 024325          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM  244 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~  244 (269)
                      +   ..+|++++|+|+....+... ..++..+..   .+.|+++|.||+|+.+......  +........   ...++++
T Consensus        73 ~---~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~--~~~~~~~~~---~~~~~~~  144 (167)
T cd01867          73 Y---RGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSK--EEGEALADE---YGIKFLE  144 (167)
T ss_pred             h---CCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCH--HHHHHHHHH---cCCEEEE
Confidence            3   34999999999875322111 233333333   3579999999999985322111  111111221   2468999


Q ss_pred             eeCCCCCCHHHHHHHHHHhh
Q 024325          245 VSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       245 vSa~~g~gi~~L~~~i~~~~  264 (269)
                      +||++|.|+++++++|.+.+
T Consensus       145 ~Sa~~~~~v~~~~~~i~~~~  164 (167)
T cd01867         145 TSAKANINVEEAFFTLAKDI  164 (167)
T ss_pred             EeCCCCCCHHHHHHHHHHHH
Confidence            99999999999999998765

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.83  E-value=7.9e-20  Score=136.53  Aligned_cols=113  Identities=24%  Similarity=0.399  Sum_probs=86.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE---EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHh
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~---~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~  170 (269)
                      +|+++|.+|+|||||+|+|++. ....+++.+++|++....   ..+..+.++||||+.+........    .....+..
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~-~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~----~~~~~~~~   75 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGK-KLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDG----KEIRKFLE   75 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS-TSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHH----HHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHhcc-ccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHH----HHHHHHHH
Confidence            5899999999999999999997 567899999999998442   236678999999997754332211    22333444


Q ss_pred             cccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEec
Q 024325          171 TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTK  212 (269)
Q Consensus       171 ~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK  212 (269)
                      ....+|++++|+|+.......+..+++.+. .++|+++|+||
T Consensus        76 ~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK  116 (116)
T PF01926_consen   76 QISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK  116 (116)
T ss_dssp             HHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred             HHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence            456699999999987644455677888886 78999999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>cd01866 Rab2 Rab2 subfamily

Probab=99.83  E-value=4.3e-19  Score=141.08  Aligned_cols=154  Identities=17%  Similarity=0.131  Sum_probs=96.3

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCcccc-CCCCCceeEeeEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRT-SDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~-s~~~gtt~~~~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      ..+|+++|.+|+|||||++++++.. .... ....|.+........   ...+.+|||||..          .+..+...
T Consensus         4 ~~ki~vvG~~~vGKSsLl~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~   72 (168)
T cd01866           4 LFKYIIIGDTGVGKSCLLLQFTDKR-FQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE----------SFRSITRS   72 (168)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCC-CCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcH----------HHHHHHHH
Confidence            4689999999999999999999873 2211 222222222222222   3468999999952          12223333


Q ss_pred             HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeE
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM  243 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi  243 (269)
                      +.   ..+|++++|+|+....+..+ ..++..+..   .+.|+++|.||+|+........  .........   ...+++
T Consensus        73 ~~---~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~--~~~~~~~~~---~~~~~~  144 (168)
T cd01866          73 YY---RGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSY--EEGEAFAKE---HGLIFM  144 (168)
T ss_pred             Hh---ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCH--HHHHHHHHH---cCCEEE
Confidence            33   34899999999874222211 233333433   2589999999999974322111  111111222   246799


Q ss_pred             EeeCCCCCCHHHHHHHHHHhh
Q 024325          244 MVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       244 ~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      ++||++|+|+++++.++.+.+
T Consensus       145 e~Sa~~~~~i~~~~~~~~~~~  165 (168)
T cd01866         145 ETSAKTASNVEEAFINTAKEI  165 (168)
T ss_pred             EEeCCCCCCHHHHHHHHHHHH
Confidence            999999999999999998765

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.83  E-value=3.8e-19  Score=140.92  Aligned_cols=153  Identities=16%  Similarity=0.164  Sum_probs=96.2

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee--EEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~--~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      .+|+++|++|+|||||++++++.. . .....++.+.+..  ...   ....+.+|||||...          +..+...
T Consensus         3 ~ki~i~G~~~vGKSsli~~~~~~~-~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~~~   70 (166)
T cd01869           3 FKLLLIGDSGVGKSCLLLRFADDT-Y-TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER----------FRTITSS   70 (166)
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCC-C-CCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHh----------HHHHHHH
Confidence            589999999999999999999862 2 2222333332322  111   134688999999521          2223333


Q ss_pred             HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeE
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM  243 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi  243 (269)
                      ++.   .+|++++|+|+++..+... ..++..+..   .+.|+++|+||+|+........  +........   ...+++
T Consensus        71 ~~~---~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~--~~~~~~~~~---~~~~~~  142 (166)
T cd01869          71 YYR---GAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDY--SEAQEFADE---LGIPFL  142 (166)
T ss_pred             HhC---cCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCH--HHHHHHHHH---cCCeEE
Confidence            333   4999999999875221111 123333333   3579999999999865432211  111111111   246899


Q ss_pred             EeeCCCCCCHHHHHHHHHHhhh
Q 024325          244 MVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       244 ~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      ++||++|.|+++++.+|.+.+.
T Consensus       143 ~~Sa~~~~~v~~~~~~i~~~~~  164 (166)
T cd01869         143 ETSAKNATNVEQAFMTMAREIK  164 (166)
T ss_pred             EEECCCCcCHHHHHHHHHHHHH
Confidence            9999999999999999988763

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd01868 Rab11_like Rab11-like

Probab=99.83  E-value=4.2e-19  Score=140.46  Aligned_cols=153  Identities=17%  Similarity=0.155  Sum_probs=95.9

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee--EEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~--~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      ..+|+++|++|+|||||++++++.. . .....|.++.+..  ....   ...+.+|||||..          .+..+..
T Consensus         3 ~~ki~vvG~~~~GKSsli~~l~~~~-~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~~~   70 (165)
T cd01868           3 LFKIVLIGDSGVGKSNLLSRFTRNE-F-NLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQE----------RYRAITS   70 (165)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCC-C-CCCCCCccceEEEEEEEEECCEEEEEEEEeCCChH----------HHHHHHH
Confidence            3589999999999999999999873 2 2222333333221  1111   2358899999962          1233334


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  242 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  242 (269)
                      .++.   .++++++|+|.++.....+ .+++..+..   .+.|+++|+||+|+........  +........   ...++
T Consensus        71 ~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~--~~~~~~~~~---~~~~~  142 (165)
T cd01868          71 AYYR---GAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPT--EEAKAFAEK---NGLSF  142 (165)
T ss_pred             HHHC---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCH--HHHHHHHHH---cCCEE
Confidence            4433   3899999999874322211 233333333   2589999999999875322111  111111221   14679


Q ss_pred             EEeeCCCCCCHHHHHHHHHHhh
Q 024325          243 MMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       243 i~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      +++||++|.|+++++++|...+
T Consensus       143 ~~~Sa~~~~~v~~l~~~l~~~i  164 (165)
T cd01868         143 IETSALDGTNVEEAFKQLLTEI  164 (165)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            9999999999999999997654

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.83  E-value=2.2e-19  Score=144.70  Aligned_cols=154  Identities=16%  Similarity=0.188  Sum_probs=95.6

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee-EEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHh
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~-~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~  170 (269)
                      ..+|+++|.+|+|||||++++... ..  ....|.+..+.. ....+..+.+|||||...      .    ..+...|+.
T Consensus        17 ~~ki~ivG~~~~GKTsl~~~l~~~-~~--~~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~------~----~~~~~~~~~   83 (181)
T PLN00223         17 EMRILMVGLDAAGKTTILYKLKLG-EI--VTTIPTIGFNVETVEYKNISFTVWDVGGQDK------I----RPLWRHYFQ   83 (181)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccC-CC--ccccCCcceeEEEEEECCEEEEEEECCCCHH------H----HHHHHHHhc
Confidence            368999999999999999999865 22  222222222222 222356799999999621      1    223233333


Q ss_pred             cccccceEEEEEeCCCCCCcch--HHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhc--CCCCCCeE
Q 024325          171 TRVSLKRVCLLIDTKWGVKPRD--HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN--NSLVQPVM  243 (269)
Q Consensus       171 ~~~~~d~vl~vid~~~~~~~~~--~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~vi  243 (269)
                         .+|++++|+|+++......  .++...+..   .+.|+++|+||+|+.......+..    +.+...  ......++
T Consensus        84 ---~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~----~~l~l~~~~~~~~~~~  156 (181)
T PLN00223         84 ---NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEIT----DKLGLHSLRQRHWYIQ  156 (181)
T ss_pred             ---cCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHH----HHhCccccCCCceEEE
Confidence               3899999999985322111  122222222   368999999999997654433222    222111  11122466


Q ss_pred             EeeCCCCCCHHHHHHHHHHhhh
Q 024325          244 MVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       244 ~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      ++||++|+|+++++++|.+.+.
T Consensus       157 ~~Sa~~g~gv~e~~~~l~~~~~  178 (181)
T PLN00223        157 STCATSGEGLYEGLDWLSNNIA  178 (181)
T ss_pred             eccCCCCCCHHHHHHHHHHHHh
Confidence            8999999999999999987654

>cd01865 Rab3 Rab3 subfamily

Probab=99.83  E-value=3.5e-19  Score=141.13  Aligned_cols=150  Identities=19%  Similarity=0.183  Sum_probs=94.0

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCC-CCceeEee---EEE--eCCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK-PGLTQTIN---FFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~-~gtt~~~~---~~~--~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      .+|+++|.+|+|||||++++.+.. .  ...+ |.++.+..   ...  ....+.+|||||...          +..+..
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~-~--~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~----------~~~~~~   68 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDS-F--TSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQER----------YRTITT   68 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCC-C--CCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHH----------HHHHHH
Confidence            479999999999999999999873 2  2222 22221221   111  124689999999621          122223


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHH-HHHHHHHHHHHHhcCCCCCC
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDV-ARRAMQIEESLKANNSLVQP  241 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~  241 (269)
                      .+   ...+|++++|+|.++...... .+++..+..   ...|+++|+||+|+...... .+....+.+   .   ...+
T Consensus        69 ~~---~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~---~---~~~~  139 (165)
T cd01865          69 AY---YRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLAD---Q---LGFE  139 (165)
T ss_pred             HH---ccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHH---H---cCCE
Confidence            33   335999999999874321111 233344433   25789999999999754321 111111211   1   2457


Q ss_pred             eEEeeCCCCCCHHHHHHHHHHhh
Q 024325          242 VMMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       242 vi~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      ++++||++|.|+++|+++|...+
T Consensus       140 ~~~~Sa~~~~gv~~l~~~l~~~~  162 (165)
T cd01865         140 FFEASAKENINVKQVFERLVDII  162 (165)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            99999999999999999998764

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.83  E-value=1.8e-19  Score=137.04  Aligned_cols=141  Identities=23%  Similarity=0.272  Sum_probs=98.0

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR  172 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~  172 (269)
                      .+|+++|++|||||||+++|.+.. .     ....|+.+.+..     .+|||||-.--         ...+......+.
T Consensus         2 krimliG~~g~GKTTL~q~L~~~~-~-----~~~KTq~i~~~~-----~~IDTPGEyiE---------~~~~y~aLi~ta   61 (143)
T PF10662_consen    2 KRIMLIGPSGSGKTTLAQALNGEE-I-----RYKKTQAIEYYD-----NTIDTPGEYIE---------NPRFYHALIVTA   61 (143)
T ss_pred             ceEEEECCCCCCHHHHHHHHcCCC-C-----CcCccceeEecc-----cEEECChhhee---------CHHHHHHHHHHH
Confidence            379999999999999999999973 1     122556666542     45999994211         023444555556


Q ss_pred             cccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCC-CchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCC
Q 024325          173 VSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV-FPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGA  251 (269)
Q Consensus       173 ~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~  251 (269)
                      .++|+|++|.|+..+.......+...   .+.|+|-|+||+|+. ++.+.+...+.++    ...  ..++|.+|+.+|+
T Consensus        62 ~dad~V~ll~dat~~~~~~pP~fa~~---f~~pvIGVITK~Dl~~~~~~i~~a~~~L~----~aG--~~~if~vS~~~~e  132 (143)
T PF10662_consen   62 QDADVVLLLQDATEPRSVFPPGFASM---FNKPVIGVITKIDLPSDDANIERAKKWLK----NAG--VKEIFEVSAVTGE  132 (143)
T ss_pred             hhCCEEEEEecCCCCCccCCchhhcc---cCCCEEEEEECccCccchhhHHHHHHHHH----HcC--CCCeEEEECCCCc
Confidence            67999999999987554444444333   468999999999998 3334443333333    221  3467999999999


Q ss_pred             CHHHHHHHHHH
Q 024325          252 GIRSLRTVLSK  262 (269)
Q Consensus       252 gi~~L~~~i~~  262 (269)
                      |+++|.++|.+
T Consensus       133 Gi~eL~~~L~~  143 (143)
T PF10662_consen  133 GIEELKDYLEE  143 (143)
T ss_pred             CHHHHHHHHhC
Confidence            99999999863

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd04140 ARHI_like ARHI subfamily

Probab=99.83  E-value=2.8e-19  Score=141.72  Aligned_cols=150  Identities=15%  Similarity=0.095  Sum_probs=92.6

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCce----eEee-EEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT----QTIN-FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt----~~~~-~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      .+|+++|.+|+|||||++++++.. .  ...+..+.    .... .......+.+|||||....          ..+...
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~-f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~~~   68 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGT-F--RESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQF----------PAMQRL   68 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCC-C--CCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcc----------hHHHHH
Confidence            479999999999999999999862 1  11111111    1111 1112345789999997431          122223


Q ss_pred             HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh------hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCC
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ  240 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~------~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  240 (269)
                      +..   .++++++|+|.+...+... ..+++.+..      .++|+++|+||+|+....+.....  ......   ....
T Consensus        69 ~~~---~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~--~~~~~~---~~~~  140 (165)
T cd04140          69 SIS---KGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNE--GAACAT---EWNC  140 (165)
T ss_pred             Hhh---cCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHH--HHHHHH---HhCC
Confidence            332   3899999999875433222 233444433      358999999999997532221111  111111   1246


Q ss_pred             CeEEeeCCCCCCHHHHHHHHHHh
Q 024325          241 PVMMVSSKSGAGIRSLRTVLSKI  263 (269)
Q Consensus       241 ~vi~vSa~~g~gi~~L~~~i~~~  263 (269)
                      +++++||++|+|+++++++|...
T Consensus       141 ~~~e~SA~~g~~v~~~f~~l~~~  163 (165)
T cd04140         141 AFMETSAKTNHNVQELFQELLNL  163 (165)
T ss_pred             cEEEeecCCCCCHHHHHHHHHhc
Confidence            78999999999999999999754

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.83  E-value=3e-19  Score=149.35  Aligned_cols=155  Identities=20%  Similarity=0.206  Sum_probs=105.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE---EEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHh
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~---~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~  170 (269)
                      +|+++|++|+|||||+|+|++..  ..+++++++|.+...   ...+..+.+|||||+.......      ..+...+..
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~--~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~------~~~~~~~l~   73 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTK--SEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADG------KGRGRQVIA   73 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC--ccccCCCCccccceEEEEEECCeEEEEEECCCcccccccc------hhHHHHHHH
Confidence            68999999999999999999974  557888998876543   2346789999999985432111      112223334


Q ss_pred             cccccceEEEEEeCCCCCCc------------------------------------------ch-HH-------------
Q 024325          171 TRVSLKRVCLLIDTKWGVKP------------------------------------------RD-HE-------------  194 (269)
Q Consensus       171 ~~~~~d~vl~vid~~~~~~~------------------------------------------~~-~~-------------  194 (269)
                      ....+|++++|+|+......                                          .+ ..             
T Consensus        74 ~~~~ad~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~  153 (233)
T cd01896          74 VARTADLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNA  153 (233)
T ss_pred             hhccCCEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeE
Confidence            45569999999997642210                                          00 01             


Q ss_pred             ------------HHHHHHh--hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHH
Q 024325          195 ------------LISLMER--SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL  260 (269)
Q Consensus       195 ------------~~~~l~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i  260 (269)
                                  +.+.+..  ..+|+++|+||+|+.+..+...        +..    ..+++++||++|.|+++|++.|
T Consensus       154 ~v~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~~~--------~~~----~~~~~~~SA~~g~gi~~l~~~i  221 (233)
T cd01896         154 DVLIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELDL--------LAR----QPNSVVISAEKGLNLDELKERI  221 (233)
T ss_pred             EEEEccCCCHHHHHHHHhCCceEeeEEEEEECccCCCHHHHHH--------Hhc----CCCEEEEcCCCCCCHHHHHHHH
Confidence                        1111111  1258999999999986654331        111    2468999999999999999999


Q ss_pred             HHhhhhhc
Q 024325          261 SKIARFAK  268 (269)
Q Consensus       261 ~~~~~~~k  268 (269)
                      .+.+...+
T Consensus       222 ~~~L~~ir  229 (233)
T cd01896         222 WDKLGLIR  229 (233)
T ss_pred             HHHhCcEE
Confidence            98876554

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>cd01863 Rab18 Rab18 subfamily

Probab=99.83  E-value=2.8e-19  Score=140.83  Aligned_cols=151  Identities=19%  Similarity=0.166  Sum_probs=95.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHh
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~  170 (269)
                      +|+++|++|+|||||+|+|++........+.++.+.......   ....+.+|||||...          +..+...++ 
T Consensus         2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~~~~-   70 (161)
T cd01863           2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQER----------FRTLTSSYY-   70 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchh----------hhhhhHHHh-
Confidence            799999999999999999998732122333444333332222   134689999999622          122222232 


Q ss_pred             cccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEe
Q 024325          171 TRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV  245 (269)
Q Consensus       171 ~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v  245 (269)
                        ..+|++++|+|.....+... ..++..+..    .+.|+++|+||+|+............+   ...   ...+++++
T Consensus        71 --~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~---~~~---~~~~~~~~  142 (161)
T cd01863          71 --RGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKF---ARK---HNMLFIET  142 (161)
T ss_pred             --CCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHH---HHH---cCCEEEEE
Confidence              34999999999875322221 223333332    367899999999998433222211122   111   14679999


Q ss_pred             eCCCCCCHHHHHHHHHHh
Q 024325          246 SSKSGAGIRSLRTVLSKI  263 (269)
Q Consensus       246 Sa~~g~gi~~L~~~i~~~  263 (269)
                      ||++|+|++++++.+.+.
T Consensus       143 Sa~~~~gi~~~~~~~~~~  160 (161)
T cd01863         143 SAKTRDGVQQAFEELVEK  160 (161)
T ss_pred             ecCCCCCHHHHHHHHHHh
Confidence            999999999999998764

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd00154 Rab Rab family

Probab=99.83  E-value=3.2e-19  Score=139.18  Aligned_cols=150  Identities=17%  Similarity=0.156  Sum_probs=95.2

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCcccc-CCCCCceeEeeEEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRT-SDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~-s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      ++|+++|.+|+|||||+|++++.. .... .+..+.+.......   ....+.+|||||..          .+......+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~~~~~   69 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGK-FDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQE----------RFRSITPSY   69 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCc-CCCccCCceeeeeEEEEEEECCEEEEEEEEecCChH----------HHHHHHHHH
Confidence            379999999999999999999873 2222 22222222222222   24568899999962          122233333


Q ss_pred             HhcccccceEEEEEeCCCCCCcch-HHHHHHHHhh---CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEE
Q 024325          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM  244 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~~---~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~  244 (269)
                      +   ..+|++++|+|+........ ..++..+...   ..|+++|+||+|+..+....  ...+.+....   ...+++.
T Consensus        70 ~---~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~---~~~~~~~  141 (159)
T cd00154          70 Y---RGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVS--TEEAQQFAKE---NGLLFFE  141 (159)
T ss_pred             h---cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccccccccc--HHHHHHHHHH---cCCeEEE
Confidence            3   34999999999975221111 2344444443   48999999999997322211  1222222222   2578999


Q ss_pred             eeCCCCCCHHHHHHHHH
Q 024325          245 VSSKSGAGIRSLRTVLS  261 (269)
Q Consensus       245 vSa~~g~gi~~L~~~i~  261 (269)
                      +||++|.|+++++++|.
T Consensus       142 ~sa~~~~~i~~~~~~i~  158 (159)
T cd00154         142 TSAKTGENVEELFQSLA  158 (159)
T ss_pred             EecCCCCCHHHHHHHHh
Confidence            99999999999999985

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.83  E-value=4.2e-19  Score=140.25  Aligned_cols=151  Identities=16%  Similarity=0.156  Sum_probs=96.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCce-eEee--EEE----eCCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTIN--FFK----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt-~~~~--~~~----~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      +|+++|.+|+|||||++++.+. .......+..++ .++.  ...    ....+.+|||||.          +.+..+..
T Consensus         2 ki~vvG~~~~GKtsl~~~l~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~----------~~~~~~~~   70 (164)
T cd04101           2 RCAVVGDPAVGKTAFVQMFHSN-GAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQ----------ELYSDMVS   70 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC-CCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCH----------HHHHHHHH
Confidence            7999999999999999999864 112333443333 2321  111    1246889999995          22233444


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHhh--CCcEEEEEecCCCCCchHHHHHH-HHHHHHHHhcCCCCCCe
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVFPIDVARRA-MQIEESLKANNSLVQPV  242 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~~~v  242 (269)
                      .++   ..+|++++|+|.+...+... ..++..+...  +.|+++|+||+|+.+..+..... +.+..      ....++
T Consensus        71 ~~~---~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~  141 (164)
T cd04101          71 NYW---ESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQ------ANQLKF  141 (164)
T ss_pred             HHh---CCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHH------HcCCeE
Confidence            443   34999999999875322111 2344444433  58999999999997543222111 11111      124678


Q ss_pred             EEeeCCCCCCHHHHHHHHHHhh
Q 024325          243 MMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       243 i~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      +++||++|.|++++++.|.+.+
T Consensus       142 ~~~Sa~~~~gi~~l~~~l~~~~  163 (164)
T cd04101         142 FKTSALRGVGYEEPFESLARAF  163 (164)
T ss_pred             EEEeCCCCCChHHHHHHHHHHh
Confidence            9999999999999999998764

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.82  E-value=1.7e-19  Score=168.84  Aligned_cols=151  Identities=26%  Similarity=0.285  Sum_probs=105.8

Q ss_pred             cCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE---EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhccccc
Q 024325           99 GRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSL  175 (269)
Q Consensus        99 G~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~---~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (269)
                      |.||+|||||+|+|++..  ..+++.||+|.+....   ..+..+.+|||||..+-..... .   +.+...|... ..+
T Consensus         1 G~pNvGKSSL~N~Ltg~~--~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~-~---e~v~~~~l~~-~~a   73 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGAN--QTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSL-E---EEVARDYLLN-EKP   73 (591)
T ss_pred             CCCCCCHHHHHHHHhCCC--CeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccch-H---HHHHHHHHhh-cCC
Confidence            899999999999999984  5789999999987532   3466799999999865321110 0   1222333332 348


Q ss_pred             ceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHH
Q 024325          176 KRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRS  255 (269)
Q Consensus       176 d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~  255 (269)
                      |++++|+|+++.  .....+...+.+.++|+++|+||+|+..........+.+.+.      .+.|++++||++|+|+++
T Consensus        74 DvvI~VvDat~l--er~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~------lg~pvv~tSA~tg~Gi~e  145 (591)
T TIGR00437        74 DLVVNVVDASNL--ERNLYLTLQLLELGIPMILALNLVDEAEKKGIRIDEEKLEER------LGVPVVPTSATEGRGIER  145 (591)
T ss_pred             CEEEEEecCCcc--hhhHHHHHHHHhcCCCEEEEEehhHHHHhCCChhhHHHHHHH------cCCCEEEEECCCCCCHHH
Confidence            999999999752  223444455556789999999999986543322222233222      247899999999999999


Q ss_pred             HHHHHHHhh
Q 024325          256 LRTVLSKIA  264 (269)
Q Consensus       256 L~~~i~~~~  264 (269)
                      ++++|.+..
T Consensus       146 L~~~i~~~~  154 (591)
T TIGR00437       146 LKDAIRKAI  154 (591)
T ss_pred             HHHHHHHHh
Confidence            999998754

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>cd00879 Sar1 Sar1 subfamily

Probab=99.82  E-value=1.5e-19  Score=146.53  Aligned_cols=157  Identities=19%  Similarity=0.169  Sum_probs=94.9

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhc
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST  171 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~  171 (269)
                      .++|+++|++|||||||++++.+. ......+..+.+. ..+...+..+.+|||||...      .    ..+...++  
T Consensus        19 ~~ki~ilG~~~~GKStLi~~l~~~-~~~~~~~T~~~~~-~~i~~~~~~~~l~D~~G~~~------~----~~~~~~~~--   84 (190)
T cd00879          19 EAKILFLGLDNAGKTTLLHMLKDD-RLAQHVPTLHPTS-EELTIGNIKFKTFDLGGHEQ------A----RRLWKDYF--   84 (190)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC-CCcccCCccCcce-EEEEECCEEEEEEECCCCHH------H----HHHHHHHh--
Confidence            468999999999999999999986 3222222222211 11222356788999999621      1    11122222  


Q ss_pred             ccccceEEEEEeCCCCCC--cchHHHHHHHH---hhCCcEEEEEecCCCCCchHHHHHHHHHHHHHH---------hcCC
Q 024325          172 RVSLKRVCLLIDTKWGVK--PRDHELISLME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLK---------ANNS  237 (269)
Q Consensus       172 ~~~~d~vl~vid~~~~~~--~~~~~~~~~l~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~---------~~~~  237 (269)
                       ..+|.+++|+|..+...  .....+...+.   ..+.|+++|+||+|+..........+.+...-.         ....
T Consensus        85 -~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (190)
T cd00879          85 -PEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGI  163 (190)
T ss_pred             -ccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCc
Confidence             34899999999874311  11122222222   245899999999999754333333222211000         0001


Q ss_pred             CCCCeEEeeCCCCCCHHHHHHHHHHh
Q 024325          238 LVQPVMMVSSKSGAGIRSLRTVLSKI  263 (269)
Q Consensus       238 ~~~~vi~vSa~~g~gi~~L~~~i~~~  263 (269)
                      ...+++++||++|+|+++++++|...
T Consensus       164 ~~~~~~~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         164 RPIEVFMCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             eeEEEEEeEecCCCChHHHHHHHHhh
Confidence            12468999999999999999999765

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.82  E-value=9.1e-19  Score=138.08  Aligned_cols=151  Identities=19%  Similarity=0.199  Sum_probs=96.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe--eEEEe-C--CcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~--~~~~~-~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      +|+++|++|+|||||++++++.. . .....+.++.+.  ..... +  ..+.+|||||..          .+..+...+
T Consensus         2 kv~v~G~~~~GKTtli~~l~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~----------~~~~~~~~~   69 (164)
T smart00175        2 KIILIGDSGVGKSSLLSRFTDGK-F-SEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE----------RFRSITSSY   69 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC-C-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCChH----------HHHHHHHHH
Confidence            79999999999999999999873 2 222223223222  11122 2  367899999952          122333344


Q ss_pred             HhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHH-HHHHHHHHHHHhcCCCCCCeE
Q 024325          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLVQPVM  243 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~vi  243 (269)
                      +   ..+|++++|+|+.+..+... ..++..+..   .+.|+++|+||+|+....... +....+   ...   ...+++
T Consensus        70 ~---~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~---~~~---~~~~~~  140 (164)
T smart00175       70 Y---RGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAF---AEE---HGLPFF  140 (164)
T ss_pred             h---CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHH---HHH---cCCeEE
Confidence            3   34999999999875322221 123333333   358999999999987632211 111111   111   146799


Q ss_pred             EeeCCCCCCHHHHHHHHHHhhh
Q 024325          244 MVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       244 ~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      ++||++|.|+++++++|.+.+.
T Consensus       141 e~Sa~~~~~i~~l~~~i~~~~~  162 (164)
T smart00175      141 ETSAKTNTNVEEAFEELAREIL  162 (164)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHh
Confidence            9999999999999999988763

Rab GTPases are implicated in vesicle trafficking.

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.82  E-value=3.1e-19  Score=141.74  Aligned_cols=152  Identities=13%  Similarity=0.048  Sum_probs=93.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe-eEEE--eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHh
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-NFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~-~~~~--~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~  170 (269)
                      +|+++|.+|||||||+++++.........+..+..... .+..  ....+.+|||||....          ..+...++.
T Consensus         2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~~~~~~   71 (166)
T cd00877           2 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKF----------GGLRDGYYI   71 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhh----------ccccHHHhc
Confidence            79999999999999999998652111112211111111 1111  1346889999997321          122222322


Q ss_pred             cccccceEEEEEeCCCCCCcch-HHHHHHHHhh--CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeC
Q 024325          171 TRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS  247 (269)
Q Consensus       171 ~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa  247 (269)
                         .+|++++|+|.+...+... ..++..+...  ++|+++|+||+|+......... .   +...   ....+++++||
T Consensus        72 ---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~~~-~---~~~~---~~~~~~~e~Sa  141 (166)
T cd00877          72 ---GGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAKQ-I---TFHR---KKNLQYYEISA  141 (166)
T ss_pred             ---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCHHH-H---HHHH---HcCCEEEEEeC
Confidence               3899999999875422222 1233444332  6999999999999743211111 1   1111   12567999999


Q ss_pred             CCCCCHHHHHHHHHHhhh
Q 024325          248 KSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       248 ~~g~gi~~L~~~i~~~~~  265 (269)
                      ++|.|+++++++|.+.+.
T Consensus       142 ~~~~~v~~~f~~l~~~~~  159 (166)
T cd00877         142 KSNYNFEKPFLWLARKLL  159 (166)
T ss_pred             CCCCChHHHHHHHHHHHH
Confidence            999999999999987764

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.82  E-value=5.2e-19  Score=139.51  Aligned_cols=153  Identities=20%  Similarity=0.197  Sum_probs=95.6

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccc-cCCCCCce---eEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVR-TSDKPGLT---QTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~-~s~~~gtt---~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      .+|+++|++|+|||||+|++++.. ... ..+..+.+   ..+.+...+..+.+|||||...          +..+...+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~----------~~~~~~~~   70 (163)
T cd01860           2 FKLVLLGDSSVGKSSLVLRFVKNE-FSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQER----------YRSLAPMY   70 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC-CCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHH----------HHHHHHHH
Confidence            479999999999999999999873 222 23333322   2222222345688999999521          12222223


Q ss_pred             HhcccccceEEEEEeCCCCCCcc-hHHHHHHHHhh---CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEE
Q 024325          169 VSTRVSLKRVCLLIDTKWGVKPR-DHELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM  244 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~~~~~~-~~~~~~~l~~~---~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~  244 (269)
                      .   ..+|++++|+|++...+.. ...++..+...   ..|+++|+||+|+........  ..........   ..++++
T Consensus        71 ~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~--~~~~~~~~~~---~~~~~~  142 (163)
T cd01860          71 Y---RGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVST--EEAQEYADEN---GLLFFE  142 (163)
T ss_pred             h---ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCH--HHHHHHHHHc---CCEEEE
Confidence            2   2389999999987432111 12344444333   478999999999874321111  1111222221   367999


Q ss_pred             eeCCCCCCHHHHHHHHHHhh
Q 024325          245 VSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       245 vSa~~g~gi~~L~~~i~~~~  264 (269)
                      +||++|.|+++++++|.+.+
T Consensus       143 ~Sa~~~~~v~~l~~~l~~~l  162 (163)
T cd01860         143 TSAKTGENVNELFTEIAKKL  162 (163)
T ss_pred             EECCCCCCHHHHHHHHHHHh
Confidence            99999999999999998764

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04144 Ras2 Ras2 subfamily

Probab=99.82  E-value=3.1e-19  Score=144.91  Aligned_cols=151  Identities=15%  Similarity=0.151  Sum_probs=95.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEEeC--CcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      +|+++|.+|+|||||+++|+.. .  +...+++|+.+..   ....+  ..+.+|||||...          +..+...|
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~-~--f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~~   67 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLN-H--FVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEE----------YTALRDQW   67 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhC-C--CCccCCCchHhhEEEEEEECCEEEEEEEEECCCchh----------hHHHHHHH
Confidence            4899999999999999999876 2  2333444443221   11112  3478999999622          12233334


Q ss_pred             HhcccccceEEEEEeCCCCCCcch-HHHHHHHHh------hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCC
Q 024325          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP  241 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~------~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (269)
                      +..   +|++++|+|.+...+... ..++..+..      .+.|+++|+||+|+.........  ...+....   ...+
T Consensus        68 ~~~---ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~--~~~~~~~~---~~~~  139 (190)
T cd04144          68 IRE---GEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTE--EGAALARR---LGCE  139 (190)
T ss_pred             HHh---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHH--HHHHHHHH---hCCE
Confidence            333   899999999875322221 233333332      35799999999999643222111  11111111   1367


Q ss_pred             eEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          242 VMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       242 vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      ++++||++|.|+++++++|.+.+.
T Consensus       140 ~~e~SAk~~~~v~~l~~~l~~~l~  163 (190)
T cd04144         140 FIEASAKTNVNVERAFYTLVRALR  163 (190)
T ss_pred             EEEecCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999987654

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>CHL00071 tufA elongation factor Tu

Probab=99.82  E-value=5.2e-19  Score=159.50  Aligned_cols=161  Identities=19%  Similarity=0.237  Sum_probs=115.1

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCc--------------cccCCCCCceeEeeEE---EeCCcEEEEcCCCCCCcch
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGV--------------VRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYA  153 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~--------------~~~s~~~gtt~~~~~~---~~~~~~~lvDtpG~~~~~~  153 (269)
                      ...+|+++|++|+|||||+|+|++....              ......+|+|.+....   ..+..+.|+||||+.    
T Consensus        11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~----   86 (409)
T CHL00071         11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA----   86 (409)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH----
Confidence            3468999999999999999999975210              0111236788776432   235678999999962    


Q ss_pred             hHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCc-EEEEEecCCCCCchHH-HHHHHHHHHH
Q 024325          154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDV-ARRAMQIEES  231 (269)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p-~iiv~NK~Dl~~~~~~-~~~~~~~~~~  231 (269)
                               .+.......+..+|++++|+|+..+...++.+++..+...++| +|+|+||+|+.+..+. +.....+...
T Consensus        87 ---------~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~  157 (409)
T CHL00071         87 ---------DYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVREL  157 (409)
T ss_pred             ---------HHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence                     3344444555569999999999988888888899988888999 7789999999875443 2233456665


Q ss_pred             HHhcC--CCCCCeEEeeCCCCCC------------------HHHHHHHHHHhh
Q 024325          232 LKANN--SLVQPVMMVSSKSGAG------------------IRSLRTVLSKIA  264 (269)
Q Consensus       232 ~~~~~--~~~~~vi~vSa~~g~g------------------i~~L~~~i~~~~  264 (269)
                      +....  ....|++++||.+|.+                  +..|++.|...+
T Consensus       158 l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~  210 (409)
T CHL00071        158 LSKYDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYI  210 (409)
T ss_pred             HHHhCCCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhC
Confidence            55432  1247899999999863                  567777776543

>cd04127 Rab27A Rab27a subfamily

Probab=99.82  E-value=6.7e-19  Score=141.36  Aligned_cols=153  Identities=16%  Similarity=0.136  Sum_probs=94.9

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe-----eEEE----------eCCcEEEEcCCCCCCcchhHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-----NFFK----------LGTKLCLVDLPGYGFAYAKEE  156 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~-----~~~~----------~~~~~~lvDtpG~~~~~~~~~  156 (269)
                      ..+|+++|.+|+|||||++++.+..  ......+..+.+.     .+..          ....+.+|||||..       
T Consensus         4 ~~ki~ivG~~~vGKTsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-------   74 (180)
T cd04127           4 LIKFLALGDSGVGKTSFLYQYTDNK--FNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQE-------   74 (180)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCC--CCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChH-------
Confidence            3689999999999999999998862  1111122221121     1110          12458899999952       


Q ss_pred             HHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHHHHHHHHHHH
Q 024325          157 VKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEES  231 (269)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~  231 (269)
                         .+..+...+++   .+|++++|+|.....+..+ ..++..+..    .+.|+++|.||+|+........  +...+.
T Consensus        75 ---~~~~~~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~--~~~~~~  146 (180)
T cd04127          75 ---RFRSLTTAFFR---DAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSE--EQAKAL  146 (180)
T ss_pred             ---HHHHHHHHHhC---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCH--HHHHHH
Confidence               22333344443   4999999999875322221 233333433    2578999999999975322111  111222


Q ss_pred             HHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325          232 LKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       232 ~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      ....   ..+++++||++|.|+++++++|.+.+
T Consensus       147 ~~~~---~~~~~e~Sak~~~~v~~l~~~l~~~~  176 (180)
T cd04127         147 ADKY---GIPYFETSAATGTNVEKAVERLLDLV  176 (180)
T ss_pred             HHHc---CCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            2221   46899999999999999999998754

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>PTZ00369 Ras-like protein; Provisional

Probab=99.82  E-value=2.5e-19  Score=145.34  Aligned_cols=153  Identities=14%  Similarity=0.093  Sum_probs=95.0

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeE-e--eEE--EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-I--NFF--KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~-~--~~~--~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      .++|+++|.+|+|||||++++++..   +...+.+|..+ .  .+.  .....+.+|||||....          ..+..
T Consensus         5 ~~Ki~iiG~~~~GKTsLi~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~l~~   71 (189)
T PTZ00369          5 EYKLVVVGGGGVGKSALTIQFIQNH---FIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEY----------SAMRD   71 (189)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCC---CCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccc----------hhhHH
Confidence            3689999999999999999999862   22222222211 1  111  11335779999997432          23333


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCC
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP  241 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (269)
                      .|..   .+|++++|+|.++..+... ..+...+..    .+.|+++|+||+|+.........  ........   ...+
T Consensus        72 ~~~~---~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~--~~~~~~~~---~~~~  143 (189)
T PTZ00369         72 QYMR---TGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTG--EGQELAKS---FGIP  143 (189)
T ss_pred             HHhh---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHH--HHHHHHHH---hCCE
Confidence            3443   3899999999875422111 223333322    36799999999998643221110  11111111   1368


Q ss_pred             eEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          242 VMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       242 vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      ++++||++|.|+++++++|.+.+.
T Consensus       144 ~~e~Sak~~~gi~~~~~~l~~~l~  167 (189)
T PTZ00369        144 FLETSAKQRVNVDEAFYELVREIR  167 (189)
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999987654

>PLN03118 Rab family protein; Provisional

Probab=99.82  E-value=7.9e-19  Score=144.85  Aligned_cols=155  Identities=20%  Similarity=0.136  Sum_probs=98.3

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      .++|+++|.+|+|||||+++|++. ......+..+.+........   ...+.+|||||...          +..+...+
T Consensus        14 ~~kv~ivG~~~vGKTsli~~l~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~----------~~~~~~~~   82 (211)
T PLN03118         14 SFKILLIGDSGVGKSSLLVSFISS-SVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQER----------FRTLTSSY   82 (211)
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhC-CCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchh----------hHHHHHHH
Confidence            468999999999999999999987 33333333333333222222   24688999999632          22333344


Q ss_pred             HhcccccceEEEEEeCCCCCCcchH--HHHHHHHh----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325          169 VSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  242 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~~~~~~~~--~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  242 (269)
                      +.   .+|++++|+|.+...+....  .+...+..    .+.|+++|+||+|+........  +........   ...++
T Consensus        83 ~~---~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~--~~~~~~~~~---~~~~~  154 (211)
T PLN03118         83 YR---NAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSR--EEGMALAKE---HGCLF  154 (211)
T ss_pred             Hh---cCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCH--HHHHHHHHH---cCCEE
Confidence            33   38999999998753222221  12222322    2568999999999975433211  111111111   14678


Q ss_pred             EEeeCCCCCCHHHHHHHHHHhhh
Q 024325          243 MMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       243 i~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      +++||++|.|+++++++|.+.+.
T Consensus       155 ~e~SAk~~~~v~~l~~~l~~~~~  177 (211)
T PLN03118        155 LECSAKTRENVEQCFEELALKIM  177 (211)
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999987663

>cd04122 Rab14 Rab14 subfamily

Probab=99.82  E-value=4.3e-19  Score=140.73  Aligned_cols=151  Identities=16%  Similarity=0.157  Sum_probs=95.3

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCcee-Ee--eEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ-TI--NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~-~~--~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      .+|+++|.+|+|||||++++.+. .  +...++.|+. +.  .....   ...+.+|||||..          .+..+..
T Consensus         3 ~ki~iiG~~~vGKTsli~~~~~~-~--~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~   69 (166)
T cd04122           3 FKYIIIGDMGVGKSCLLHQFTEK-K--FMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQE----------RFRAVTR   69 (166)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC-C--CCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcH----------HHHHHHH
Confidence            57999999999999999999987 2  2334443332 21  11111   3457899999952          1223333


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  242 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  242 (269)
                      .++.   .+|++++|+|.++..+... ..++..+..   .+.|+++|.||+|+........  +...+....   ...++
T Consensus        70 ~~~~---~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~--~~~~~~~~~---~~~~~  141 (166)
T cd04122          70 SYYR---GAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTY--EEAKQFADE---NGLLF  141 (166)
T ss_pred             HHhc---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCH--HHHHHHHHH---cCCEE
Confidence            3433   4999999999875322111 133333322   3578999999999975432211  111122221   24689


Q ss_pred             EEeeCCCCCCHHHHHHHHHHhh
Q 024325          243 MMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       243 i~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      +++||++|.|+++++.++...+
T Consensus       142 ~e~Sa~~~~~i~e~f~~l~~~~  163 (166)
T cd04122         142 LECSAKTGENVEDAFLETAKKI  163 (166)
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            9999999999999999887654

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.82  E-value=7e-19  Score=138.63  Aligned_cols=149  Identities=21%  Similarity=0.229  Sum_probs=93.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCC-CCCceeEeeE--E-----EeCCcEEEEcCCCCCCcchhHHHHHHHHHHH
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSD-KPGLTQTINF--F-----KLGTKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~-~~gtt~~~~~--~-----~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~  165 (269)
                      +|+++|.+|+|||||++++++..   .... .+....+...  .     .....+.+|||||..          .+..+.
T Consensus         2 kv~~vG~~~~GKTsl~~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~   68 (162)
T cd04106           2 KVIVVGNGNVGKSSMIQRFVKGI---FTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQE----------EFDAIT   68 (162)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC---CCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchH----------HHHHhH
Confidence            69999999999999999999862   1222 2222233211  1     113468999999952          223444


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh--hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325          166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  242 (269)
Q Consensus       166 ~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  242 (269)
                      ..+++   .+|++++|+|......... ..++..+..  .+.|+++|+||+|+........  +........   ...++
T Consensus        69 ~~~~~---~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~--~~~~~~~~~---~~~~~  140 (162)
T cd04106          69 KAYYR---GAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITN--EEAEALAKR---LQLPL  140 (162)
T ss_pred             HHHhc---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCH--HHHHHHHHH---cCCeE
Confidence            44443   4899999999874322111 123333322  3689999999999975432211  111111111   24689


Q ss_pred             EEeeCCCCCCHHHHHHHHHHh
Q 024325          243 MMVSSKSGAGIRSLRTVLSKI  263 (269)
Q Consensus       243 i~vSa~~g~gi~~L~~~i~~~  263 (269)
                      +++||++|.|+++++++|...
T Consensus       141 ~~~Sa~~~~~v~~l~~~l~~~  161 (162)
T cd04106         141 FRTSVKDDFNVTELFEYLAEK  161 (162)
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            999999999999999998754

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.82  E-value=8.5e-19  Score=143.58  Aligned_cols=153  Identities=14%  Similarity=0.132  Sum_probs=94.7

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCc-eeEee--EEEe----CCcEEEEcCCCCCCcchhHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL-TQTIN--FFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gt-t~~~~--~~~~----~~~~~lvDtpG~~~~~~~~~~~~~~~~~~  165 (269)
                      .+|+++|.+|+|||||++++++..   ....+..| ..+..  ....    ...+.+|||||...          +..+.
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~---~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~----------~~~~~   67 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGI---FSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQER----------FGGMT   67 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCC---CCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchh----------hhhhH
Confidence            379999999999999999999862   12222222 22321  1111    23578999999621          23333


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcch-HHHHHHHH-------hhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCC
Q 024325          166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME-------RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNS  237 (269)
Q Consensus       166 ~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~-------~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~  237 (269)
                      ..++.   .++++++|+|......... ..++..+.       ...+|+++|+||+|+.......  ...+.+...... 
T Consensus        68 ~~~~~---~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~--~~~~~~~~~~~~-  141 (201)
T cd04107          68 RVYYR---GAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKD--GEQMDQFCKENG-  141 (201)
T ss_pred             HHHhC---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccC--HHHHHHHHHHcC-
Confidence            44444   3899999999875322221 12222222       1357999999999997321111  111222222211 


Q ss_pred             CCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          238 LVQPVMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       238 ~~~~vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                       ..+++++||++|.|+++++++|.+.+.
T Consensus       142 -~~~~~e~Sak~~~~v~e~f~~l~~~l~  168 (201)
T cd04107         142 -FIGWFETSAKEGINIEEAMRFLVKNIL  168 (201)
T ss_pred             -CceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence             257999999999999999999988663

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04112 Rab26 Rab26 subfamily

Probab=99.82  E-value=6.5e-19  Score=143.09  Aligned_cols=153  Identities=16%  Similarity=0.183  Sum_probs=96.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCce-eEee--EEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt-~~~~--~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      +|+++|.+|+|||||++++.+..  .....++.|+ .+..  ....   ...+.+|||||..          .+..+...
T Consensus         2 Ki~vvG~~~vGKTSli~~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~   69 (191)
T cd04112           2 KVMLLGDSGVGKTCLLVRFKDGA--FLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQE----------RFRSVTHA   69 (191)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC--CCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcH----------HHHHhhHH
Confidence            69999999999999999998863  2222322222 2221  1222   2468899999952          11222233


Q ss_pred             HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHH-HHHHHHHHHHHhcCCCCCCe
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLVQPV  242 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~v  242 (269)
                      ++   ..+|++++|+|.+...+... ..++..+..   .+.|+++|+||+|+....... .....+.   ..   ...++
T Consensus        70 ~~---~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~---~~---~~~~~  140 (191)
T cd04112          70 YY---RDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLA---KE---YGVPF  140 (191)
T ss_pred             Hc---cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHH---HH---cCCeE
Confidence            33   34899999999875322211 223333333   357999999999996432211 1111221   11   24689


Q ss_pred             EEeeCCCCCCHHHHHHHHHHhhhhh
Q 024325          243 MMVSSKSGAGIRSLRTVLSKIARFA  267 (269)
Q Consensus       243 i~vSa~~g~gi~~L~~~i~~~~~~~  267 (269)
                      +++||++|.|+++++++|.+.+...
T Consensus       141 ~e~Sa~~~~~v~~l~~~l~~~~~~~  165 (191)
T cd04112         141 METSAKTGLNVELAFTAVAKELKHR  165 (191)
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            9999999999999999998876543

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04109 Rab28 Rab28 subfamily

Probab=99.82  E-value=8.7e-19  Score=145.02  Aligned_cols=150  Identities=19%  Similarity=0.192  Sum_probs=95.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCC-CceeEeeE--EEe----CCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-GLTQTINF--FKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~-gtt~~~~~--~~~----~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      +|+++|.+|+|||||+|+|++..   +...+. ..+.+...  ...    ...+.+|||||..          .+..+..
T Consensus         2 Ki~ivG~~~vGKSsLi~~l~~~~---~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~----------~~~~l~~   68 (215)
T cd04109           2 KIVVLGDGAVGKTSLCRRFAKEG---FGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQS----------IGGKMLD   68 (215)
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC---CCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcH----------HHHHHHH
Confidence            69999999999999999999872   233333 23334321  111    2467899999952          1233444


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHhh------CCcEEEEEecCCCCCchHHH-HHHHHHHHHHHhcCCC
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS------QTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSL  238 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~~------~~p~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~  238 (269)
                      .|+.   .+|++++|+|.++...... ..++..+...      +.|+++|+||+|+....... .....+.   ..   .
T Consensus        69 ~~~~---~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~---~~---~  139 (215)
T cd04109          69 KYIY---GAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFA---QA---N  139 (215)
T ss_pred             HHhh---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHH---HH---c
Confidence            4443   3999999999875322221 2333444332      35799999999997432211 1111221   11   1


Q ss_pred             CCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          239 VQPVMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       239 ~~~vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      ..+++++||++|+|+++++++|...+.
T Consensus       140 ~~~~~~iSAktg~gv~~lf~~l~~~l~  166 (215)
T cd04109         140 GMESCLVSAKTGDRVNLLFQQLAAELL  166 (215)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            367899999999999999999988764

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04176 Rap2 Rap2 subgroup

Probab=99.82  E-value=3.1e-19  Score=140.98  Aligned_cols=150  Identities=15%  Similarity=0.103  Sum_probs=93.4

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE--EE-e--CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FK-L--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~--~~-~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      .+|+++|.+|+|||||++++++..   ....+.+|..+...  .. .  ...+.+|||||....          ..+...
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~~~   68 (163)
T cd04176           2 YKVVVLGSGGVGKSALTVQFVSGT---FIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF----------ASMRDL   68 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC---CCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccc----------cchHHH
Confidence            479999999999999999998762   22233333322211  11 1  234778999996321          222333


Q ss_pred             HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHHH-HHHHHHHHHHhcCCCCCC
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVAR-RAMQIEESLKANNSLVQP  241 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~  241 (269)
                      |..   .+|++++|+|..+..+..+ ..++..+..    .++|+++|+||+|+........ ....+.+   .   ...+
T Consensus        69 ~~~---~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~---~---~~~~  139 (163)
T cd04176          69 YIK---NGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAE---E---WGCP  139 (163)
T ss_pred             HHh---hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHH---H---hCCE
Confidence            333   3899999999875322111 233333332    4689999999999864322111 1111111   1   1368


Q ss_pred             eEEeeCCCCCCHHHHHHHHHHhh
Q 024325          242 VMMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       242 vi~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      ++++||++|.|+++++.+|.+.+
T Consensus       140 ~~~~Sa~~~~~v~~l~~~l~~~l  162 (163)
T cd04176         140 FMETSAKSKTMVNELFAEIVRQM  162 (163)
T ss_pred             EEEecCCCCCCHHHHHHHHHHhc
Confidence            89999999999999999998654

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.82  E-value=5.3e-19  Score=159.33  Aligned_cols=159  Identities=23%  Similarity=0.316  Sum_probs=107.9

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCcc--ccCCCCCceeEeeEE-----------------E------------eCCcE
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVV--RTSDKPGLTQTINFF-----------------K------------LGTKL  140 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~--~~s~~~gtt~~~~~~-----------------~------------~~~~~  140 (269)
                      ..+|+++|.+++|||||+++|.+.. ..  ......|.|-+..+.                 .            .+..+
T Consensus         4 ~~~i~iiG~~~~GKSTL~~~Lt~~~-~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   82 (406)
T TIGR03680         4 EVNIGMVGHVDHGKTTLTKALTGVW-TDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV   82 (406)
T ss_pred             eEEEEEEccCCCCHHHHHHHHhCee-cccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence            4689999999999999999998641 10  001112233222211                 0            13568


Q ss_pred             EEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCC-CcchHHHHHHHHhhCC-cEEEEEecCCCCCc
Q 024325          141 CLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERSQT-KYQVVLTKTDTVFP  218 (269)
Q Consensus       141 ~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~-~~~~~~~~~~l~~~~~-p~iiv~NK~Dl~~~  218 (269)
                      .+|||||+             ..+...+......+|.+++|+|+..+. ..+..+.+..+...++ |+++|+||+|+.+.
T Consensus        83 ~liDtPGh-------------~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~  149 (406)
T TIGR03680        83 SFVDAPGH-------------ETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSK  149 (406)
T ss_pred             EEEECCCH-------------HHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCH
Confidence            99999996             233344455555689999999999876 5666666666666654 68999999999875


Q ss_pred             hHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325          219 IDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      .........+.+.+........+++++||++|+|+++|+++|...+
T Consensus       150 ~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l  195 (406)
T TIGR03680       150 EKALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI  195 (406)
T ss_pred             HHHHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence            5443333444444332222356899999999999999999998754

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>cd04142 RRP22 RRP22 subfamily

Probab=99.82  E-value=6.3e-19  Score=143.94  Aligned_cols=160  Identities=17%  Similarity=0.079  Sum_probs=95.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEEeC--CcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      +|+++|.+|+|||||++++++.. .. ....|.++.+..   ....+  ..+.+|||||......  .....|...   .
T Consensus         2 kI~ivG~~~vGKTsLi~~~~~~~-f~-~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~--~~~~e~~~~---~   74 (198)
T cd04142           2 RVAVLGAPGVGKTAIVRQFLAQE-FP-EEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPG--TAGQEWMDP---R   74 (198)
T ss_pred             EEEEECCCCCcHHHHHHHHHcCC-CC-cccCCccccccceeEEEECCEEEEEEEEeCCCcccCCc--cchhHHHHH---H
Confidence            69999999999999999999862 21 122333332321   11123  4578999999753211  111111111   1


Q ss_pred             HhcccccceEEEEEeCCCCCCcch-HHHHHHHHh------hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCC
Q 024325          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP  241 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~------~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (269)
                      ......+|++++|+|++.+.+... ..+.+.+..      .++|+++|.||+|+........  +.+......  ....+
T Consensus        75 ~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~--~~~~~~~~~--~~~~~  150 (198)
T cd04142          75 FRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPR--HVLSVLVRK--SWKCG  150 (198)
T ss_pred             HhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccH--HHHHHHHHH--hcCCc
Confidence            222345999999999975422221 223333322      3589999999999965321111  111111111  12578


Q ss_pred             eEEeeCCCCCCHHHHHHHHHHhh
Q 024325          242 VMMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       242 vi~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      ++++||++|.|+++|++.+.+.+
T Consensus       151 ~~e~Sak~g~~v~~lf~~i~~~~  173 (198)
T cd04142         151 YLECSAKYNWHILLLFKELLISA  173 (198)
T ss_pred             EEEecCCCCCCHHHHHHHHHHHh
Confidence            99999999999999999887654

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.82  E-value=8.5e-19  Score=143.12  Aligned_cols=165  Identities=23%  Similarity=0.214  Sum_probs=107.7

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccC---CCCCceeEeeEEEe--CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTS---DKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s---~~~gtt~~~~~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      ++|+++|.+|+|||||+|+|++........   ....+|.....+..  ...+.+|||||+++.....  .    .+...
T Consensus         2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~--~----~~l~~   75 (197)
T cd04104           2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPP--D----DYLEE   75 (197)
T ss_pred             eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCH--H----HHHHH
Confidence            479999999999999999999852111111   11123443333321  3468999999997642211  1    11111


Q ss_pred             HHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchH---------HHHHHHHHHH----HHHh
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID---------VARRAMQIEE----SLKA  234 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~---------~~~~~~~~~~----~~~~  234 (269)
                        .....+|+++++.+.  .+...+..+++.+...+.|+++|+||+|+..+..         .....+.+.+    .+..
T Consensus        76 --~~~~~~d~~l~v~~~--~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~  151 (197)
T cd04104          76 --MKFSEYDFFIIISST--RFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQE  151 (197)
T ss_pred             --hCccCcCEEEEEeCC--CCCHHHHHHHHHHHHhCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHH
Confidence              113347888887543  5677788889999888999999999999975432         1223333333    3332


Q ss_pred             cCCCCCCeEEeeCC--CCCCHHHHHHHHHHhhhhh
Q 024325          235 NNSLVQPVMMVSSK--SGAGIRSLRTVLSKIARFA  267 (269)
Q Consensus       235 ~~~~~~~vi~vSa~--~g~gi~~L~~~i~~~~~~~  267 (269)
                      ......+++.+|+.  .++|+..|.+.|...+...
T Consensus       152 ~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~  186 (197)
T cd04104         152 AGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH  186 (197)
T ss_pred             cCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence            22335689999998  6899999999998877543

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>PRK12736 elongation factor Tu; Reviewed

Probab=99.82  E-value=9.2e-19  Score=157.19  Aligned_cols=161  Identities=20%  Similarity=0.255  Sum_probs=116.8

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcC-----cc---------ccCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcch
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWG-----VV---------RTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYA  153 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~-----~~---------~~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~  153 (269)
                      ...+|+++|++++|||||+++|++...     ..         ......|+|.+.....   .+..+.++||||+     
T Consensus        11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh-----   85 (394)
T PRK12736         11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGH-----   85 (394)
T ss_pred             CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCH-----
Confidence            346899999999999999999987310     00         0111567787765333   3567899999996     


Q ss_pred             hHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCc-EEEEEecCCCCCchHHHH-HHHHHHHH
Q 024325          154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVAR-RAMQIEES  231 (269)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p-~iiv~NK~Dl~~~~~~~~-~~~~~~~~  231 (269)
                              ..+...+......+|++++|+|+..+...++.+++..+...++| +++|+||+|+.+..+..+ ....+.+.
T Consensus        86 --------~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~  157 (394)
T PRK12736         86 --------ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVREL  157 (394)
T ss_pred             --------HHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHHH
Confidence                    23445555666679999999999988888888888888888998 678999999985544332 23355555


Q ss_pred             HHhcC--CCCCCeEEeeCCCCC--------CHHHHHHHHHHhh
Q 024325          232 LKANN--SLVQPVMMVSSKSGA--------GIRSLRTVLSKIA  264 (269)
Q Consensus       232 ~~~~~--~~~~~vi~vSa~~g~--------gi~~L~~~i~~~~  264 (269)
                      +....  ....|++++||++|.        +++.|++.|...+
T Consensus       158 l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l  200 (394)
T PRK12736        158 LSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI  200 (394)
T ss_pred             HHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence            54332  124689999999983        6889998887765

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.82  E-value=3.1e-19  Score=148.04  Aligned_cols=148  Identities=18%  Similarity=0.236  Sum_probs=98.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCc-----------------------------cccCCCCCceeEeeE---EEeCCcEE
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGV-----------------------------VRTSDKPGLTQTINF---FKLGTKLC  141 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~-----------------------------~~~s~~~gtt~~~~~---~~~~~~~~  141 (269)
                      +|+++|++++|||||+.+|+.....                             .......|+|++...   ...+..+.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            4899999999999999998643110                             001114567777643   33477899


Q ss_pred             EEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCC-------CCcchHHHHHHHHhhC-CcEEEEEecC
Q 024325          142 LVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------VKPRDHELISLMERSQ-TKYQVVLTKT  213 (269)
Q Consensus       142 lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~-------~~~~~~~~~~~l~~~~-~p~iiv~NK~  213 (269)
                      +|||||+.             .+...+......+|++++|+|+..+       ...+....+......+ .|+++|+||+
T Consensus        81 liDtpG~~-------------~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~  147 (219)
T cd01883          81 ILDAPGHR-------------DFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKM  147 (219)
T ss_pred             EEECCChH-------------HHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEcc
Confidence            99999962             1223344445569999999999863       3334445555555555 6899999999


Q ss_pred             CCCCc----hHHHHHHHHHHHHHHhcCC--CCCCeEEeeCCCCCCHH
Q 024325          214 DTVFP----IDVARRAMQIEESLKANNS--LVQPVMMVSSKSGAGIR  254 (269)
Q Consensus       214 Dl~~~----~~~~~~~~~~~~~~~~~~~--~~~~vi~vSa~~g~gi~  254 (269)
                      |+..+    .......+.+...+.....  ...+++++||++|.|++
T Consensus       148 Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         148 DDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             ccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            99842    2344445555544544321  24789999999999987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>cd04113 Rab4 Rab4 subfamily

Probab=99.81  E-value=8.2e-19  Score=138.26  Aligned_cols=152  Identities=14%  Similarity=0.116  Sum_probs=93.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHh
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~  170 (269)
                      +|+++|++|+|||||+++|++........+..+..........   ...+.+|||||...          +..+...++.
T Consensus         2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~----------~~~~~~~~~~   71 (161)
T cd04113           2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQER----------FRSVTRSYYR   71 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHH----------HHHhHHHHhc
Confidence            7999999999999999999987311111122221111111111   24578999999621          1223333333


Q ss_pred             cccccceEEEEEeCCCCCCcch-HHHHHHHH---hhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEee
Q 024325          171 TRVSLKRVCLLIDTKWGVKPRD-HELISLME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS  246 (269)
Q Consensus       171 ~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vS  246 (269)
                         .+|++++|+|.....+... ..++..+.   ..+.|+++|+||+|+.......  ..........   ...+++.+|
T Consensus        72 ---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~--~~~~~~~~~~---~~~~~~~~S  143 (161)
T cd04113          72 ---GAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVT--FLEASRFAQE---NGLLFLETS  143 (161)
T ss_pred             ---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCC--HHHHHHHHHH---cCCEEEEEE
Confidence               4899999999976433222 23333332   2468999999999997532211  1111112222   137899999


Q ss_pred             CCCCCCHHHHHHHHHHh
Q 024325          247 SKSGAGIRSLRTVLSKI  263 (269)
Q Consensus       247 a~~g~gi~~L~~~i~~~  263 (269)
                      |++|.|++++++++.+.
T Consensus       144 a~~~~~i~~~~~~~~~~  160 (161)
T cd04113         144 ALTGENVEEAFLKCARS  160 (161)
T ss_pred             CCCCCCHHHHHHHHHHh
Confidence            99999999999999865

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.81  E-value=1.5e-18  Score=138.45  Aligned_cols=154  Identities=15%  Similarity=0.161  Sum_probs=95.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCce-eEeeE--EE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTINF--FK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt-~~~~~--~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      +|+++|.+|+|||||++++++..   +...+..|. .+...  ..   ....+.+|||||..          .+..+...
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~---f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~   68 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDV---FDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQE----------RFKCIAST   68 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC---CCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChH----------HHHhhHHH
Confidence            68999999999999999999872   233333332 23221  11   13468999999962          22333334


Q ss_pred             HHhcccccceEEEEEeCCCCCCcc-hHHHHHHHHhh----CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMERS----QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  242 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~-~~~~~~~l~~~----~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  242 (269)
                      +++   .+|++++|+|+....+.. ...++..+...    ..|+++|.||+|+.+..+..............   ...++
T Consensus        69 ~~~---~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~  142 (170)
T cd04108          69 YYR---GAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAE---MQAEY  142 (170)
T ss_pred             Hhc---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHH---cCCeE
Confidence            433   499999999997421111 12344433222    25689999999986543321111111111111   13578


Q ss_pred             EEeeCCCCCCHHHHHHHHHHhhhh
Q 024325          243 MMVSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       243 i~vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      +.+||++|.|++++++.|...+..
T Consensus       143 ~e~Sa~~g~~v~~lf~~l~~~~~~  166 (170)
T cd04108         143 WSVSALSGENVREFFFRVAALTFE  166 (170)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999887643

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04110 Rab35 Rab35 subfamily

Probab=99.81  E-value=1.8e-18  Score=141.43  Aligned_cols=156  Identities=16%  Similarity=0.148  Sum_probs=97.0

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee--EEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHH
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~--~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~  165 (269)
                      ..++|+++|++|+|||||++++.+.. . .....+....+..  ....   ...+.+|||||...          +..+.
T Consensus         5 ~~~kivvvG~~~vGKTsli~~l~~~~-~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~----------~~~~~   72 (199)
T cd04110           5 HLFKLLIIGDSGVGKSSLLLRFADNT-F-SGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQER----------FRTIT   72 (199)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCC-C-CCCcCccccceeEEEEEEECCEEEEEEEEeCCCchh----------HHHHH
Confidence            35799999999999999999999872 2 1111122222221  1111   23578999999621          22333


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh--hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325          166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  242 (269)
Q Consensus       166 ~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  242 (269)
                      ..++.   .++++++|+|+++...... ..++..+..  ...|+++|+||+|+........  .........   ...++
T Consensus        73 ~~~~~---~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~--~~~~~~~~~---~~~~~  144 (199)
T cd04110          73 STYYR---GTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVET--EDAYKFAGQ---MGISL  144 (199)
T ss_pred             HHHhC---CCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCH--HHHHHHHHH---cCCEE
Confidence            34433   3899999999875322221 233444433  2479999999999975422211  111111111   24679


Q ss_pred             EEeeCCCCCCHHHHHHHHHHhhhh
Q 024325          243 MMVSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       243 i~vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      +++||++|.|+++++++|...+-.
T Consensus       145 ~e~Sa~~~~gi~~lf~~l~~~~~~  168 (199)
T cd04110         145 FETSAKENINVEEMFNCITELVLR  168 (199)
T ss_pred             EEEECCCCcCHHHHHHHHHHHHHH
Confidence            999999999999999999887643

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd01862 Rab7 Rab7 subfamily

Probab=99.81  E-value=1.5e-18  Score=138.01  Aligned_cols=153  Identities=15%  Similarity=0.112  Sum_probs=92.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee--EEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~--~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      +|+++|++|+|||||+|++.+.. . .....+..+.+..  ...   ....+.+|||||...          +..+...+
T Consensus         2 ki~viG~~~~GKSsl~~~l~~~~-~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~~~~~   69 (172)
T cd01862           2 KVIILGDSGVGKTSLMNQYVNKK-F-SNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQER----------FQSLGVAF   69 (172)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC-C-CcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHH----------HHhHHHHH
Confidence            79999999999999999999873 2 1211222222221  111   123467999999621          12222333


Q ss_pred             HhcccccceEEEEEeCCCCCCcch-HHHHHHH-Hh------hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCC
Q 024325          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLM-ER------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ  240 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l-~~------~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  240 (269)
                      +   ..+|.+++++|+..+..... ..+...+ ..      .++|+++|+||+|+..+.....  ..+.......  ...
T Consensus        70 ~---~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~--~~~~~~~~~~--~~~  142 (172)
T cd01862          70 Y---RGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVST--KKAQQWCQSN--GNI  142 (172)
T ss_pred             h---cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCH--HHHHHHHHHc--CCc
Confidence            3   34899999999875322111 1222221 11      2689999999999984321110  1111112211  136


Q ss_pred             CeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          241 PVMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       241 ~vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      +++++||++|.|+++++++|.+.+.
T Consensus       143 ~~~~~Sa~~~~gv~~l~~~i~~~~~  167 (172)
T cd01862         143 PYFETSAKEAINVEQAFETIARKAL  167 (172)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            8999999999999999999987653

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.81  E-value=5.8e-19  Score=140.35  Aligned_cols=154  Identities=18%  Similarity=0.195  Sum_probs=96.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhccc
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV  173 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (269)
                      .|+++|.+|||||||++++.+. ......+..|.+.. .+...+..+.+|||||...      .    ..+...|+   .
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~~-~~~~~~~~~~i~D~~G~~~------~----~~~~~~~~---~   65 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTPT-KLRLDKYEVCIFDLGGGAN------F----RGIWVNYY---A   65 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceEE-EEEECCEEEEEEECCCcHH------H----HHHHHHHH---c
Confidence            3799999999999999999986 32333444444322 2223466789999999621      1    22223333   3


Q ss_pred             ccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHHHHHHHHH-HHHHhcCCCCCCeEEeeC
Q 024325          174 SLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIE-ESLKANNSLVQPVMMVSS  247 (269)
Q Consensus       174 ~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~~vi~vSa  247 (269)
                      .+|++++|+|++....... ..++..+..    .++|+++|+||+|+.......+....+. +.+........+++++||
T Consensus        66 ~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa  145 (167)
T cd04161          66 EAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSA  145 (167)
T ss_pred             CCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEc
Confidence            4999999999875322211 223333322    3689999999999976543333333221 011100112356888999


Q ss_pred             CCC------CCHHHHHHHHHH
Q 024325          248 KSG------AGIRSLRTVLSK  262 (269)
Q Consensus       248 ~~g------~gi~~L~~~i~~  262 (269)
                      ++|      .|+++.++||..
T Consensus       146 ~~g~~~~~~~g~~~~~~wl~~  166 (167)
T cd04161         146 IEGLGKKIDPSIVEGLRWLLA  166 (167)
T ss_pred             eeCCCCccccCHHHHHHHHhc
Confidence            998      899999999964

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.81  E-value=9.2e-19  Score=142.84  Aligned_cols=166  Identities=12%  Similarity=0.153  Sum_probs=116.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccC-CCCCceeEeeEE---EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTS-DKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s-~~~gtt~~~~~~---~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~  169 (269)
                      +|+++|.||+|||||+|+|++.. ....+ ..+++|+++...   ..+..+.++||||+.+.....  ......+...+.
T Consensus         2 ~i~lvG~~g~GKSsl~N~ilg~~-~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~--~~~~~~i~~~~~   78 (196)
T cd01852           2 RLVLVGKTGAGKSATGNTILGRE-VFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSP--EQLSKEIVRCLS   78 (196)
T ss_pred             EEEEECCCCCCHHHHHHHhhCCC-ccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCCh--HHHHHHHHHHHH
Confidence            69999999999999999999983 33333 245778776543   347789999999998763321  112234455555


Q ss_pred             hcccccceEEEEEeCCCCCCcchHHHHHHHHhh-----CCcEEEEEecCCCCCchHHHHHH----HHHHHHHHhcCCCCC
Q 024325          170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERS-----QTKYQVVLTKTDTVFPIDVARRA----MQIEESLKANNSLVQ  240 (269)
Q Consensus       170 ~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~-----~~p~iiv~NK~Dl~~~~~~~~~~----~~~~~~~~~~~~~~~  240 (269)
                      .....+|++++|+++.. ++..+..+++.+...     -.++++|+|++|.+.+..+....    ..++..+..+..   
T Consensus        79 ~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~---  154 (196)
T cd01852          79 LSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGG---  154 (196)
T ss_pred             hcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCC---
Confidence            55677999999999886 777788888877653     25799999999988765544432    234444444321   


Q ss_pred             CeEEe-----eCCCCCCHHHHHHHHHHhhhh
Q 024325          241 PVMMV-----SSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       241 ~vi~v-----Sa~~g~gi~~L~~~i~~~~~~  266 (269)
                      .++..     |+..+.++++|++.|.+.+..
T Consensus       155 r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~  185 (196)
T cd01852         155 RYVAFNNKAKGEEQEQQVKELLAKVESMVKE  185 (196)
T ss_pred             eEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence            22222     467789999999999998875

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.81  E-value=5.7e-19  Score=137.39  Aligned_cols=154  Identities=23%  Similarity=0.223  Sum_probs=94.5

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE--EEe-C--CcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~--~~~-~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      ++|+++|.+|+|||||+|+|++. . ...+..++++.+...  ... +  ..+.+|||||....      ...+......
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~------~~~~~~~~~~   73 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGN-K-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDY------RAIRRLYYRA   73 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC-C-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccc------hHHHHHHHhh
Confidence            58999999999999999999998 3 566777778777653  222 3  56889999996331      1111222222


Q ss_pred             HHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeC
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS  247 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa  247 (269)
                      .......+|.+++|.+...........+...... +.|+++|+||+|+......    ......+...  ...+++++||
T Consensus        74 ~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~~~----~~~~~~~~~~--~~~~~~~~sa  146 (161)
T TIGR00231        74 VESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRDAKLK----THVAFLFAKL--NGEPIIPLSA  146 (161)
T ss_pred             hhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCcchhh----HHHHHHHhhc--cCCceEEeec
Confidence            1122222344444444332221222222232322 7899999999999865311    1122222222  1457999999


Q ss_pred             CCCCCHHHHHHHHH
Q 024325          248 KSGAGIRSLRTVLS  261 (269)
Q Consensus       248 ~~g~gi~~L~~~i~  261 (269)
                      ++|.|+++++++|.
T Consensus       147 ~~~~gv~~~~~~l~  160 (161)
T TIGR00231       147 ETGKNIDSAFKIVE  160 (161)
T ss_pred             CCCCCHHHHHHHhh
Confidence            99999999999875

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd04116 Rab9 Rab9 subfamily

Probab=99.81  E-value=8.2e-19  Score=139.56  Aligned_cols=153  Identities=14%  Similarity=0.062  Sum_probs=93.2

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe-----eEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHH
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-----NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~-----~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~  165 (269)
                      ...+|+++|.+|+|||||++++++..  ......+..+.+.     .+......+.+|||||..          .+..+.
T Consensus         4 ~~~ki~vvG~~~~GKTsli~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~----------~~~~~~   71 (170)
T cd04116           4 SLLKVILLGDGGVGKSSLMNRYVTNK--FDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQE----------RFRSLR   71 (170)
T ss_pred             eEEEEEEECCCCCCHHHHHHHHHcCC--CCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChH----------HHHHhH
Confidence            34789999999999999999998763  2222222222221     111123457899999952          223333


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh-------hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCC
Q 024325          166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNS  237 (269)
Q Consensus       166 ~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~-------~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~  237 (269)
                      ..++.   .+|++++|+|......... ..+...+..       .+.|+++|+||+|+........   .+.+.....  
T Consensus        72 ~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~---~~~~~~~~~--  143 (170)
T cd04116          72 TPFYR---GSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTE---EAQAWCREN--  143 (170)
T ss_pred             HHHhc---CCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHH---HHHHHHHHC--
Confidence            44443   3899999998764322211 122222211       3579999999999864221111   122222222  


Q ss_pred             CCCCeEEeeCCCCCCHHHHHHHHHHh
Q 024325          238 LVQPVMMVSSKSGAGIRSLRTVLSKI  263 (269)
Q Consensus       238 ~~~~vi~vSa~~g~gi~~L~~~i~~~  263 (269)
                      ...+++++||++|.|++++++++.+.
T Consensus       144 ~~~~~~e~Sa~~~~~v~~~~~~~~~~  169 (170)
T cd04116         144 GDYPYFETSAKDATNVAAAFEEAVRR  169 (170)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHhh
Confidence            13578999999999999999998764

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04114 Rab30 Rab30 subfamily

Probab=99.81  E-value=1.1e-18  Score=138.43  Aligned_cols=152  Identities=18%  Similarity=0.169  Sum_probs=95.0

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEEeC--CcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      .++|+++|++|+|||||++++.+..  ......+..+.+..   +...+  ..+.+|||||...          +.....
T Consensus         7 ~~~v~v~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~~~   74 (169)
T cd04114           7 LFKIVLIGNAGVGKTCLVRRFTQGL--FPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQER----------FRSITQ   74 (169)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHH----------HHHHHH
Confidence            4789999999999999999998652  11222222222321   11122  4578999999621          222223


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHH---hhCCcEEEEEecCCCCCchHHHHH-HHHHHHHHHhcCCCCCC
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME---RSQTKYQVVLTKTDTVFPIDVARR-AMQIEESLKANNSLVQP  241 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~---~~~~p~iiv~NK~Dl~~~~~~~~~-~~~~~~~~~~~~~~~~~  241 (269)
                      .++.   .+|.+++|+|.+....... ..++..+.   ..+.|+++|+||+|+....+.... ...+.    ..  ...+
T Consensus        75 ~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~----~~--~~~~  145 (169)
T cd04114          75 SYYR---SANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFS----DA--QDMY  145 (169)
T ss_pred             HHhc---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHH----HH--cCCe
Confidence            3333   3899999999875322111 13333333   236899999999999754332211 12221    11  1367


Q ss_pred             eEEeeCCCCCCHHHHHHHHHHhh
Q 024325          242 VMMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       242 vi~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      ++++||++|.|+++++++|.+.+
T Consensus       146 ~~~~Sa~~~~gv~~l~~~i~~~~  168 (169)
T cd04114         146 YLETSAKESDNVEKLFLDLACRL  168 (169)
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHh
Confidence            89999999999999999998753

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.81  E-value=1.1e-18  Score=157.24  Aligned_cols=162  Identities=22%  Similarity=0.279  Sum_probs=111.8

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCc-CccccCCCCCceeEeeEEE-----------------e------------CCcE
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFK-----------------L------------GTKL  140 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~-~~~~~s~~~gtt~~~~~~~-----------------~------------~~~~  140 (269)
                      ...+|+++|+.++|||||+.+|.+.. ....-.-..|.|-+..+..                 .            ...+
T Consensus         8 ~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   87 (411)
T PRK04000          8 PEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRV   87 (411)
T ss_pred             CcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEE
Confidence            34689999999999999999997641 0011111234554432210                 0            2468


Q ss_pred             EEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCC-CcchHHHHHHHHhhCC-cEEEEEecCCCCCc
Q 024325          141 CLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERSQT-KYQVVLTKTDTVFP  218 (269)
Q Consensus       141 ~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~-~~~~~~~~~~l~~~~~-p~iiv~NK~Dl~~~  218 (269)
                      .+|||||.             ..+...++.....+|.+++|+|+..+. ..+..+.+..+...+. |+++|+||+|+.+.
T Consensus        88 ~liDtPG~-------------~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~  154 (411)
T PRK04000         88 SFVDAPGH-------------ETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSK  154 (411)
T ss_pred             EEEECCCH-------------HHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccc
Confidence            99999996             345556677777799999999999776 5565666666666665 68999999999875


Q ss_pred             hHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          219 IDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      .........+...+........+++++||++|+|+++|+++|...+.
T Consensus       155 ~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~  201 (411)
T PRK04000        155 ERALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP  201 (411)
T ss_pred             hhHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence            54433334444433322223578999999999999999999987653

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.81  E-value=8.1e-19  Score=144.94  Aligned_cols=165  Identities=24%  Similarity=0.249  Sum_probs=116.4

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE---EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~---~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      ...+|.++|.+|+|||||||+|++. ....++..+-+++.....   ..+..+++|||||+++....+.      .....
T Consensus        38 ~pvnvLi~G~TG~GKSSliNALF~~-~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~------~~r~~  110 (296)
T COG3596          38 EPVNVLLMGATGAGKSSLINALFQG-EVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDA------EHRQL  110 (296)
T ss_pred             CceeEEEecCCCCcHHHHHHHHHhc-cCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhH------HHHHH
Confidence            4457889999999999999999976 445566555444443221   2356799999999998754442      22234


Q ss_pred             HHhcccccceEEEEEeCCCCCCcchHHHHHHHHh--hCCcEEEEEecCCCCCchH----------------HHHHHHHHH
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER--SQTKYQVVLTKTDTVFPID----------------VARRAMQIE  229 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~--~~~p~iiv~NK~Dl~~~~~----------------~~~~~~~~~  229 (269)
                      |...+...|++++++|+.+..-..+.+++..+..  .+.|+++++|.+|...+..                .++....+.
T Consensus       111 ~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~  190 (296)
T COG3596         111 YRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALG  190 (296)
T ss_pred             HHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHH
Confidence            4445555999999999988777777777776644  3589999999999986520                111122222


Q ss_pred             HHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325          230 ESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       230 ~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      +.++    ...|++.+|.+.++|++.|...++..+..
T Consensus       191 ~~~q----~V~pV~~~~~r~~wgl~~l~~ali~~lp~  223 (296)
T COG3596         191 RLFQ----EVKPVVAVSGRLPWGLKELVRALITALPV  223 (296)
T ss_pred             HHHh----hcCCeEEeccccCccHHHHHHHHHHhCcc
Confidence            2222    25789999999999999999999987653

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.81  E-value=1.2e-18  Score=136.07  Aligned_cols=151  Identities=20%  Similarity=0.217  Sum_probs=92.4

Q ss_pred             EEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee-EEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhccc
Q 024325           95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV  173 (269)
Q Consensus        95 v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~-~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (269)
                      |+++|++|||||||+|+|.+.. . .....|.+..+.. ....+..+.+|||||...          +..+...++   .
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~-~-~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~~~~~~---~   66 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQ-F-SEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPR----------FRSMWERYC---R   66 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCC-C-CcCccCCCCcceEEEEECCEEEEEEECCCCHh----------HHHHHHHHH---h
Confidence            7999999999999999999873 1 2222232222222 122345689999999622          122223333   3


Q ss_pred             ccceEEEEEeCCCCCCcc-h-HHHHHHHH---hhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCC
Q 024325          174 SLKRVCLLIDTKWGVKPR-D-HELISLME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSK  248 (269)
Q Consensus       174 ~~d~vl~vid~~~~~~~~-~-~~~~~~l~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~  248 (269)
                      .+|++++|+|+....... . ..+...+.   ..++|+++|+||+|+............+.  +........+++++||+
T Consensus        67 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Sa~  144 (159)
T cd04159          67 GVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMN--LKSITDREVSCYSISCK  144 (159)
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhC--cccccCCceEEEEEEec
Confidence            389999999987421111 1 11222222   14689999999999876543322222111  01111223578999999


Q ss_pred             CCCCHHHHHHHHHH
Q 024325          249 SGAGIRSLRTVLSK  262 (269)
Q Consensus       249 ~g~gi~~L~~~i~~  262 (269)
                      +|.|+++++++|.+
T Consensus       145 ~~~gi~~l~~~l~~  158 (159)
T cd04159         145 EKTNIDIVLDWLIK  158 (159)
T ss_pred             cCCChHHHHHHHhh
Confidence            99999999999865

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.81  E-value=4.1e-19  Score=150.56  Aligned_cols=161  Identities=20%  Similarity=0.245  Sum_probs=112.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE----EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF----KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~----~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~  169 (269)
                      -|.++|.|||||||||++++...  ..+.+||+||...+.-    ..+..|++-|.||+.+..+..      ..+-..|+
T Consensus       161 DVGLVG~PNaGKSTlls~vS~Ak--PKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G------~GLG~~FL  232 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSAAK--PKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEG------VGLGLRFL  232 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhhcC--CcccCCccccccCcccEEEecCCCcEEEecCcccccccccC------CCccHHHH
Confidence            58999999999999999999984  7899999999886422    235679999999998763322      12334566


Q ss_pred             hcccccceEEEEEeCCCCCC--c-ch-HHHHHHHHh-----hCCcEEEEEecCCCCCchH-HHHHHHHHHHHHHhcCCCC
Q 024325          170 STRVSLKRVCLLIDTKWGVK--P-RD-HELISLMER-----SQTKYQVVLTKTDTVFPID-VARRAMQIEESLKANNSLV  239 (269)
Q Consensus       170 ~~~~~~d~vl~vid~~~~~~--~-~~-~~~~~~l~~-----~~~p~iiv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~  239 (269)
                      ++.+-+.++++|||.+..-.  + .+ ..+...|..     .++|.++|+||+|+..+.+ .+...+.+.+..    ...
T Consensus       233 rHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~----~~~  308 (369)
T COG0536         233 RHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEAL----GWE  308 (369)
T ss_pred             HHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhc----CCC
Confidence            66666999999999984322  1 11 233344443     3689999999999665543 333333333322    112


Q ss_pred             CCeEEeeCCCCCCHHHHHHHHHHhhhhh
Q 024325          240 QPVMMVSSKSGAGIRSLRTVLSKIARFA  267 (269)
Q Consensus       240 ~~vi~vSa~~g~gi~~L~~~i~~~~~~~  267 (269)
                      .+ ++|||.+++|+++|+..+.+.+...
T Consensus       309 ~~-~~ISa~t~~g~~~L~~~~~~~l~~~  335 (369)
T COG0536         309 VF-YLISALTREGLDELLRALAELLEET  335 (369)
T ss_pred             cc-eeeehhcccCHHHHHHHHHHHHHHh
Confidence            22 2399999999999999998887654

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.81  E-value=2.1e-18  Score=161.07  Aligned_cols=158  Identities=24%  Similarity=0.365  Sum_probs=104.1

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCC-ceeEeeEEEe---------------------CCcEEEEcCCCC
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG-LTQTINFFKL---------------------GTKLCLVDLPGY  148 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~g-tt~~~~~~~~---------------------~~~~~lvDtpG~  148 (269)
                      ..|.|+++|++|+|||||+|+|.+. .  ..+..+| .|++...+..                     -+.+.+|||||+
T Consensus         5 R~p~V~i~Gh~~~GKTSLl~~l~~~-~--v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~   81 (586)
T PRK04004          5 RQPIVVVLGHVDHGKTTLLDKIRGT-A--VAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGH   81 (586)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCc-c--cccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCCh
Confidence            3589999999999999999999876 2  2333333 4444321110                     013789999997


Q ss_pred             CCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchH--------
Q 024325          149 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID--------  220 (269)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~--------  220 (269)
                      ..          +..+..   .....+|++++|+|+..++..+..+.+..+...++|+++|+||+|+.....        
T Consensus        82 e~----------f~~~~~---~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~~~  148 (586)
T PRK04004         82 EA----------FTNLRK---RGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAPFL  148 (586)
T ss_pred             HH----------HHHHHH---HhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCchHH
Confidence            32          122222   223349999999999988888887888888888999999999999863211        


Q ss_pred             ---------HH----HHHHHHHHHHHhc------------CCCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325          221 ---------VA----RRAMQIEESLKAN------------NSLVQPVMMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       221 ---------~~----~~~~~~~~~~~~~------------~~~~~~vi~vSa~~g~gi~~L~~~i~~~~  264 (269)
                               ..    .....+...+...            .....+++++||++|+|+++|++.+....
T Consensus       149 e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~  217 (586)
T PRK04004        149 ESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA  217 (586)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence                     00    0011111112111            01246899999999999999998886533

>cd04118 Rab24 Rab24 subfamily

Probab=99.81  E-value=7.6e-19  Score=142.77  Aligned_cols=153  Identities=14%  Similarity=0.152  Sum_probs=96.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe---eEEEe-C--CcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~---~~~~~-~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      +|+++|.+|+|||||++++++..  ...+++.+|....   ..... +  ..+.+|||||...          +..+...
T Consensus         2 ki~vvG~~~vGKSsLi~~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~----------~~~~~~~   69 (193)
T cd04118           2 KVVMLGKESVGKTSLVERYVHHR--FLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSER----------YEAMSRI   69 (193)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC--cCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchh----------hhhhhHh
Confidence            79999999999999999999873  2223344443321   11222 2  3467999999632          1222233


Q ss_pred             HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHhh--CCcEEEEEecCCCCCchHHHHH--HHHHHHHHHhcCCCCCCe
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVFPIDVARR--AMQIEESLKANNSLVQPV  242 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~~--~~~~~~~~~~~~~~~~~v  242 (269)
                      ++.   .+|++++|+|.....+... ..++..+...  +.|+++|+||+|+.........  ...+.+....   ...++
T Consensus        70 ~~~---~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~---~~~~~  143 (193)
T cd04118          70 YYR---GAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADE---IKAQH  143 (193)
T ss_pred             hcC---CCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHH---cCCeE
Confidence            332   4899999999875322211 2344544433  5899999999998753211000  1112222221   24678


Q ss_pred             EEeeCCCCCCHHHHHHHHHHhh
Q 024325          243 MMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       243 i~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      +++||++|.|+++|+++|.+.+
T Consensus       144 ~~~Sa~~~~gv~~l~~~i~~~~  165 (193)
T cd04118         144 FETSSKTGQNVDELFQKVAEDF  165 (193)
T ss_pred             EEEeCCCCCCHHHHHHHHHHHH
Confidence            9999999999999999998765

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.81  E-value=1.7e-18  Score=138.27  Aligned_cols=152  Identities=14%  Similarity=0.085  Sum_probs=96.3

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeE-ee--EEEe--CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-IN--FFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~-~~--~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      .+|+++|.+|+|||||++++.+.. .  ...+..|..+ ..  ....  ...+.+|||||...          +..+...
T Consensus         3 ~ki~vvG~~~vGKTsL~~~~~~~~-f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~l~~~   69 (172)
T cd04141           3 YKIVMLGAGGVGKSAVTMQFISHS-F--PDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAE----------FTAMRDQ   69 (172)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhCC-C--CCCcCCcccceEEEEEEECCEEEEEEEEeCCCchh----------hHHHhHH
Confidence            479999999999999999998762 2  2222223322 11  1111  24588999999622          2333444


Q ss_pred             HHhcccccceEEEEEeCCCCCCcchH-HHHHHHHh----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  242 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~~-~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  242 (269)
                      ++.   .+|++++|+|..+..+.... .+...+..    .++|+++|.||+|+.........  ........   ...++
T Consensus        70 ~~~---~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~--~~~~~a~~---~~~~~  141 (172)
T cd04141          70 YMR---CGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTE--EGRNLARE---FNCPF  141 (172)
T ss_pred             Hhh---cCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHH--HHHHHHHH---hCCEE
Confidence            443   38999999998764433332 23333432    35899999999998653222111  11111111   24689


Q ss_pred             EEeeCCCCCCHHHHHHHHHHhhh
Q 024325          243 MMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       243 i~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      +++||++|.|+++++++|.+.+.
T Consensus       142 ~e~Sa~~~~~v~~~f~~l~~~~~  164 (172)
T cd04141         142 FETSAALRHYIDDAFHGLVREIR  164 (172)
T ss_pred             EEEecCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999987653

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>PRK12735 elongation factor Tu; Reviewed

Probab=99.81  E-value=1.9e-18  Score=155.17  Aligned_cols=161  Identities=20%  Similarity=0.252  Sum_probs=114.9

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcC------cCcc--------ccCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcch
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQ------WGVV--------RTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYA  153 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~------~~~~--------~~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~  153 (269)
                      +..+|+++|++++|||||+++|++.      ....        ......|+|.+.....   .+..+.|+||||+     
T Consensus        11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh-----   85 (396)
T PRK12735         11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGH-----   85 (396)
T ss_pred             CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCH-----
Confidence            3468999999999999999999862      0100        0112467777764333   3567999999996     


Q ss_pred             hHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEE-EEEecCCCCCchHH-HHHHHHHHHH
Q 024325          154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ-VVLTKTDTVFPIDV-ARRAMQIEES  231 (269)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~i-iv~NK~Dl~~~~~~-~~~~~~~~~~  231 (269)
                              ..+.......+..+|.+++|+|+..+...++.+++..+...++|.+ +|+||+|+.+..+. ......+...
T Consensus        86 --------~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~  157 (396)
T PRK12735         86 --------ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVREL  157 (396)
T ss_pred             --------HHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHH
Confidence                    2344555566667999999999998877777788888888889966 57999999854332 2223345555


Q ss_pred             HHhcCC--CCCCeEEeeCCCCC----------CHHHHHHHHHHhh
Q 024325          232 LKANNS--LVQPVMMVSSKSGA----------GIRSLRTVLSKIA  264 (269)
Q Consensus       232 ~~~~~~--~~~~vi~vSa~~g~----------gi~~L~~~i~~~~  264 (269)
                      +..+..  ...|++++||++|.          |+..|++.|...+
T Consensus       158 l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~  202 (396)
T PRK12735        158 LSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI  202 (396)
T ss_pred             HHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence            544322  24789999999984          7889998887754

>cd04123 Rab21 Rab21 subfamily

Probab=99.80  E-value=2.4e-18  Score=135.22  Aligned_cols=151  Identities=19%  Similarity=0.178  Sum_probs=93.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEE--eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~--~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      +|+++|++|+|||||+|++++.. .. ....+.++.+..   ...  ....+.+|||||..          .+..+...+
T Consensus         2 ki~i~G~~~~GKStli~~l~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----------~~~~~~~~~   69 (162)
T cd04123           2 KVVLLGEGRVGKTSLVLRYVENK-FN-EKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE----------RYHALGPIY   69 (162)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC-CC-CCcCCccceeEEEEEEEECCEEEEEEEEECCchH----------HHHHhhHHH
Confidence            69999999999999999999872 22 122222222221   111  12358899999952          122333333


Q ss_pred             HhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEE
Q 024325          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM  244 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~  244 (269)
                      +.   .+|++++|+|.+++..... ..++..+..   .++|+++|+||+|+........  ..+.+....   ...++++
T Consensus        70 ~~---~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~--~~~~~~~~~---~~~~~~~  141 (162)
T cd04123          70 YR---DADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSK--SEAEEYAKS---VGAKHFE  141 (162)
T ss_pred             hc---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCH--HHHHHHHHH---cCCEEEE
Confidence            32   4899999999875322211 123333332   2589999999999975432111  111111211   2467899


Q ss_pred             eeCCCCCCHHHHHHHHHHhh
Q 024325          245 VSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       245 vSa~~g~gi~~L~~~i~~~~  264 (269)
                      +||++|.|+++++++|.+.+
T Consensus       142 ~s~~~~~gi~~~~~~l~~~~  161 (162)
T cd04123         142 TSAKTGKGIEELFLSLAKRM  161 (162)
T ss_pred             EeCCCCCCHHHHHHHHHHHh
Confidence            99999999999999998754

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>PLN03110 Rab GTPase; Provisional

Probab=99.80  E-value=2.4e-18  Score=142.47  Aligned_cols=153  Identities=16%  Similarity=0.148  Sum_probs=98.9

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe--eEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~--~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      ..+|+++|++|+|||||+++|.+.. . .....+....+.  .....   ...+.+|||||..          .+..+..
T Consensus        12 ~~Ki~ivG~~~vGKStLi~~l~~~~-~-~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~----------~~~~~~~   79 (216)
T PLN03110         12 LFKIVLIGDSGVGKSNILSRFTRNE-F-CLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE----------RYRAITS   79 (216)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCC-C-CCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcH----------HHHHHHH
Confidence            4689999999999999999999873 2 222223222232  11222   3478999999952          2233444


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHH-HHHHHHHHHHHhcCCCCCC
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLVQP  241 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~  241 (269)
                      .++.   .++++++|+|......... ..++..+..   .+.|+++|+||+|+....... +....+..   .   ...+
T Consensus        80 ~~~~---~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~---~---~~~~  150 (216)
T PLN03110         80 AYYR---GAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAE---K---EGLS  150 (216)
T ss_pred             HHhC---CCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHH---H---cCCE
Confidence            4444   3899999999875322222 234444443   368999999999986533221 11222221   1   2478


Q ss_pred             eEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          242 VMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       242 vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      ++++||++|.|+++++++|...+.
T Consensus       151 ~~e~SA~~g~~v~~lf~~l~~~i~  174 (216)
T PLN03110        151 FLETSALEATNVEKAFQTILLEIY  174 (216)
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999987664

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.80  E-value=1.3e-18  Score=157.59  Aligned_cols=161  Identities=19%  Similarity=0.238  Sum_probs=114.9

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccc--cCCCCCceeEeeEE----------------------------------
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVR--TSDKPGLTQTINFF----------------------------------  134 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~--~s~~~gtt~~~~~~----------------------------------  134 (269)
                      ...+|+++|+..+|||||+.+|++.. ...  -.-..|.|-+.-|.                                  
T Consensus        33 ~~~~ig~~GHVDhGKTtLv~aLtg~~-~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (460)
T PTZ00327         33 ATINIGTIGHVAHGKSTVVKALSGVK-TVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH  111 (460)
T ss_pred             CcEEEEEEccCCCCHHHHHHHHhCCC-cccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence            45689999999999999999999852 111  11112223222111                                  


Q ss_pred             --EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCC-CCcchHHHHHHHHhhCC-cEEEEE
Q 024325          135 --KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-VKPRDHELISLMERSQT-KYQVVL  210 (269)
Q Consensus       135 --~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~-~~~~~~~~~~~l~~~~~-p~iiv~  210 (269)
                        .....+.|+||||+             ..+.......+..+|.+++|+|+..+ ...+..+.+..+...++ |+++|+
T Consensus       112 ~~~~~~~i~~IDtPGH-------------~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvl  178 (460)
T PTZ00327        112 KMTLKRHVSFVDCPGH-------------DILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQ  178 (460)
T ss_pred             cccccceEeeeeCCCH-------------HHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEE
Confidence              01236899999996             34555666666679999999999875 56666666666666666 588999


Q ss_pred             ecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          211 TKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       211 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      ||+|+.+.....+..+.+.+.+........|++++||++|.|++.|++.|.+.+.
T Consensus       179 NKiDlv~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp  233 (460)
T PTZ00327        179 NKIDLVKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP  233 (460)
T ss_pred             ecccccCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence            9999997666666666666655443344689999999999999999999986543

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.80  E-value=1.3e-18  Score=142.07  Aligned_cols=153  Identities=13%  Similarity=0.081  Sum_probs=94.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe---eEEEeC--CcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~---~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      +|+++|.+|+|||||++++++..   ....+..++.+.   .+...+  ..+.+|||||....          ..+...+
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~----------~~~~~~~   67 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDT---FEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSF----------PAMRKLS   67 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCC---CCccCCCchhhheeEEEEECCEEEEEEEEECCCchhh----------hHHHHHH
Confidence            48999999999999999999872   233343343322   111122  46889999996321          2222223


Q ss_pred             HhcccccceEEEEEeCCCCCCcch-HHHHHHHH----hhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeE
Q 024325          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM  243 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~----~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi  243 (269)
                      +   ..+|++++|+|..+..+... ..++..+.    ..++|+++|+||+|+.......... ...+....  ....+++
T Consensus        68 ~---~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~-~~~~~~~~--~~~~~~~  141 (198)
T cd04147          68 I---QNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAK-DALSTVEL--DWNCGFV  141 (198)
T ss_pred             h---hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHH-HHHHHHHh--hcCCcEE
Confidence            2   34999999999875322221 12222222    2468999999999997531111111 11111110  1246789


Q ss_pred             EeeCCCCCCHHHHHHHHHHhhh
Q 024325          244 MVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       244 ~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      ++||++|.|+++++++|.+.+.
T Consensus       142 ~~Sa~~g~gv~~l~~~l~~~~~  163 (198)
T cd04147         142 ETSAKDNENVLEVFKELLRQAN  163 (198)
T ss_pred             EecCCCCCCHHHHHHHHHHHhh
Confidence            9999999999999999988654

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=99.80  E-value=1.6e-19  Score=148.70  Aligned_cols=180  Identities=33%  Similarity=0.485  Sum_probs=140.7

Q ss_pred             cCCCCCCCCcEEEEEcCCCCChHHHHHHHhcCcCccccCC-CCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHH
Q 024325           84 SSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-KPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWE  162 (269)
Q Consensus        84 ~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~-~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~  162 (269)
                      ....|+...|++++.|.+|+|||||||.++........+. .+|-|+.++.+..+..+.++|.||++.+.-..+....|.
T Consensus       128 ~~D~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~  207 (320)
T KOG2486|consen  128 AEDCPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWD  207 (320)
T ss_pred             eccCCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCcccccCCccCcchHh
Confidence            3556667789999999999999999999998755555555 899999999999999999999999766543444456678


Q ss_pred             HHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchH--HHHHHHH----HHHHHHhcC
Q 024325          163 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID--VARRAMQ----IEESLKANN  236 (269)
Q Consensus       163 ~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~--~~~~~~~----~~~~~~~~~  236 (269)
                      .+...|+..+++.-.+++++|++-++++.|...++++.++++|+.+|+||||......  ..+....    +....+...
T Consensus       208 ~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f  287 (320)
T KOG2486|consen  208 KFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVF  287 (320)
T ss_pred             HhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeeehhhhhhhccccccCccccceeehhhccccce
Confidence            8999999988888899999999999999999999999999999999999999875322  1111111    111111111


Q ss_pred             CCCCCeEEeeCCCCCCHHHHHHHHHHh
Q 024325          237 SLVQPVMMVSSKSGAGIRSLRTVLSKI  263 (269)
Q Consensus       237 ~~~~~vi~vSa~~g~gi~~L~~~i~~~  263 (269)
                      .-..|++.+|+.++.|++.|+-.|...
T Consensus       288 ~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~  314 (320)
T KOG2486|consen  288 LVDLPWIYVSSVTSLGRDLLLLHIAQL  314 (320)
T ss_pred             eccCCceeeecccccCceeeeeehhhh
Confidence            224678899999999999998666543

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.80  E-value=1.6e-18  Score=138.90  Aligned_cols=153  Identities=12%  Similarity=0.004  Sum_probs=96.1

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe-e--EEEe--CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-N--FFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~-~--~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      .+|+++|.+|+|||||++++....   +..++.+|..+. .  ....  ...+.+|||||....          ..+...
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~---f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~~~   68 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNK---FPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY----------DRLRPL   68 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC---CCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccch----------hhhhhh
Confidence            579999999999999999999762   334444444332 1  1111  246789999997321          122222


Q ss_pred             HHhcccccceEEEEEeCCCCCCcchH--HHHHHHHh--hCCcEEEEEecCCCCCchHHHHHH----------HHHHHHHH
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMER--SQTKYQVVLTKTDTVFPIDVARRA----------MQIEESLK  233 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~~--~~~~~l~~--~~~p~iiv~NK~Dl~~~~~~~~~~----------~~~~~~~~  233 (269)
                      ++   ..+|++++|+|.++..+....  .++..+..  .+.|+++|.||+|+....+.....          +...+...
T Consensus        69 ~~---~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~  145 (175)
T cd01874          69 SY---PQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLAR  145 (175)
T ss_pred             hc---ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHH
Confidence            33   248999999998754333222  24444443  268999999999986543221111          01111111


Q ss_pred             hcCCCCCCeEEeeCCCCCCHHHHHHHHHHh
Q 024325          234 ANNSLVQPVMMVSSKSGAGIRSLRTVLSKI  263 (269)
Q Consensus       234 ~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~  263 (269)
                      ..  ...+++++||++|.|++++++.+...
T Consensus       146 ~~--~~~~~~e~SA~tg~~v~~~f~~~~~~  173 (175)
T cd01874         146 DL--KAVKYVECSALTQKGLKNVFDEAILA  173 (175)
T ss_pred             Hh--CCcEEEEecCCCCCCHHHHHHHHHHH
Confidence            11  12579999999999999999988764

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04128 Spg1 Spg1p

Probab=99.80  E-value=3.3e-18  Score=137.89  Aligned_cols=153  Identities=14%  Similarity=0.140  Sum_probs=93.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCce-eEe--eEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTI--NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt-~~~--~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      +|+++|.+|+|||||++++++..   +...+..|. .+.  .....   ...+.+|||+|...          +..+...
T Consensus         2 Ki~vlG~~~vGKTsLi~~~~~~~---f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~----------~~~~~~~   68 (182)
T cd04128           2 KIGLLGDAQIGKTSLMVKYVEGE---FDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQRE----------FINMLPL   68 (182)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC---CCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchh----------HHHhhHH
Confidence            69999999999999999998762   223332222 222  11121   24588999999622          1223333


Q ss_pred             HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCch---HHHHHHHHHHHHHHhcCCCCC
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPI---DVARRAMQIEESLKANNSLVQ  240 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~  240 (269)
                      ++   ..+|++++|+|.++..+..+ ..++..+..   ...| ++|+||+|+....   +.........+....   ...
T Consensus        69 ~~---~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~---~~~  141 (182)
T cd04128          69 VC---NDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKA---MKA  141 (182)
T ss_pred             HC---cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHH---cCC
Confidence            33   34999999999875432222 134444433   2356 6889999996321   111111122222121   246


Q ss_pred             CeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325          241 PVMMVSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       241 ~vi~vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      +++++||++|.|+++++++|.+.+-.
T Consensus       142 ~~~e~SAk~g~~v~~lf~~l~~~l~~  167 (182)
T cd04128         142 PLIFCSTSHSINVQKIFKIVLAKAFD  167 (182)
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            89999999999999999999876644

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.80  E-value=1.6e-18  Score=140.04  Aligned_cols=155  Identities=14%  Similarity=0.065  Sum_probs=94.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCce-eEee--EEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt-~~~~--~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      +|+++|.+|+|||||++++++..   ....+.+++ .+..  ....   ...+.+|||||...          +..+...
T Consensus         2 ki~vvG~~~vGKTsli~~l~~~~---~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~   68 (187)
T cd04132           2 KIVVVGDGGCGKTCLLIVYSQGK---FPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEE----------YDRLRPL   68 (187)
T ss_pred             eEEEECCCCCCHHHHHHHHHhCc---CCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchh----------HHHHHHH
Confidence            79999999999999999999873   223333332 2221  1111   23578999999621          1222222


Q ss_pred             HHhcccccceEEEEEeCCCCCCcchH--HHHHHHHh--hCCcEEEEEecCCCCCchHHHH--HHHHHHHHHHhcCCCCCC
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMER--SQTKYQVVLTKTDTVFPIDVAR--RAMQIEESLKANNSLVQP  241 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~~--~~~~~l~~--~~~p~iiv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~~  241 (269)
                      +   ...+|++++|+|.++..+....  .++..+..  .+.|+++|+||+|+........  ......+......  ..+
T Consensus        69 ~---~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~--~~~  143 (187)
T cd04132          69 S---YPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQG--AFA  143 (187)
T ss_pred             h---CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcC--CcE
Confidence            2   3359999999998753322221  23333332  3689999999999875321000  0011111111111  237


Q ss_pred             eEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325          242 VMMVSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       242 vi~vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      ++++||++|.|++++++.+.+.+..
T Consensus       144 ~~e~Sa~~~~~v~~~f~~l~~~~~~  168 (187)
T cd04132         144 YLECSAKTMENVEEVFDTAIEEALK  168 (187)
T ss_pred             EEEccCCCCCCHHHHHHHHHHHHHh
Confidence            8999999999999999999877644

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.80  E-value=2.1e-18  Score=143.10  Aligned_cols=155  Identities=12%  Similarity=0.028  Sum_probs=97.3

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE-E--eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF-K--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~-~--~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      ..++|+++|.+|+|||||+++++.........+..|++...... .  ....+.+|||||...          +..+...
T Consensus        12 ~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~   81 (219)
T PLN03071         12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----------FGGLRDG   81 (219)
T ss_pred             CceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchh----------hhhhhHH
Confidence            34699999999999999999987652212223333333222111 1  235789999999632          1233333


Q ss_pred             HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh--hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEE
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM  244 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~  244 (269)
                      |+.   .++++++|+|.+...+... ..++..+..  .+.|+++|+||+|+........   .+ +...   ....++++
T Consensus        82 ~~~---~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~---~~-~~~~---~~~~~~~e  151 (219)
T PLN03071         82 YYI---HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK---QV-TFHR---KKNLQYYE  151 (219)
T ss_pred             Hcc---cccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHH---HH-HHHH---hcCCEEEE
Confidence            333   3899999999885432221 233333332  3689999999999864321111   11 1111   12467899


Q ss_pred             eeCCCCCCHHHHHHHHHHhhh
Q 024325          245 VSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       245 vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      +||++|.|+++++++|.+.+.
T Consensus       152 ~SAk~~~~i~~~f~~l~~~~~  172 (219)
T PLN03071        152 ISAKSNYNFEKPFLYLARKLA  172 (219)
T ss_pred             cCCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999987663

>cd00157 Rho Rho (Ras homology) family

Probab=99.80  E-value=1.5e-18  Score=137.94  Aligned_cols=152  Identities=14%  Similarity=0.036  Sum_probs=94.4

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---E--EEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---F--FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~--~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      ++|+++|.+|+|||||+++|++.. .  .....++..+..   .  ......+.+|||||....          ..+...
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~----------~~~~~~   67 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGK-F--PTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEY----------DRLRPL   67 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCC-C--CCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccc----------cccchh
Confidence            379999999999999999999873 2  122222222211   1  112346889999997432          111111


Q ss_pred             HHhcccccceEEEEEeCCCCCCcc--hHHHHHHHHhh--CCcEEEEEecCCCCCchHHHHH---------HHHHHHHHHh
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPR--DHELISLMERS--QTKYQVVLTKTDTVFPIDVARR---------AMQIEESLKA  234 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~--~~~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~~---------~~~~~~~~~~  234 (269)
                      +   ...+|++++|+|+.+..+..  ...++..+...  +.|+++|+||+|+..+......         .....+....
T Consensus        68 ~---~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~  144 (171)
T cd00157          68 S---YPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKE  144 (171)
T ss_pred             h---cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHH
Confidence            1   23489999999987532221  12344444433  4899999999999876533210         1111222222


Q ss_pred             cCCCCCCeEEeeCCCCCCHHHHHHHHHH
Q 024325          235 NNSLVQPVMMVSSKSGAGIRSLRTVLSK  262 (269)
Q Consensus       235 ~~~~~~~vi~vSa~~g~gi~~L~~~i~~  262 (269)
                      ..  ..+++++||++|.|+++++++|.+
T Consensus       145 ~~--~~~~~~~Sa~~~~gi~~l~~~i~~  170 (171)
T cd00157         145 IG--AIGYMECSALTQEGVKEVFEEAIR  170 (171)
T ss_pred             hC--CeEEEEeecCCCCCHHHHHHHHhh
Confidence            11  238999999999999999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04120 Rab12 Rab12 subfamily

Probab=99.80  E-value=2.8e-18  Score=140.32  Aligned_cols=152  Identities=16%  Similarity=0.174  Sum_probs=97.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCc-eeEeeE--EEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL-TQTINF--FKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gt-t~~~~~--~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      .|+++|..|+|||||++++....   +...++.| +.+...  ...   ...+.+|||+|..          .+..+...
T Consensus         2 ~vvvlG~~gVGKTSli~r~~~~~---f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe----------~~~~l~~~   68 (202)
T cd04120           2 QVIIIGSRGVGKTSLMRRFTDDT---FCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQE----------RFNSITSA   68 (202)
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC---CCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCch----------hhHHHHHH
Confidence            58999999999999999998762   23333322 223321  111   2568899999962          22344445


Q ss_pred             HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeE
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM  243 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi  243 (269)
                      |++.   +|++++|+|.++..+... ..++..+..   .+.|+++|.||+|+....+....  ...+.....  ...+++
T Consensus        69 y~~~---ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~--~~~~~a~~~--~~~~~~  141 (202)
T cd04120          69 YYRS---AKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQ--QGEKFAQQI--TGMRFC  141 (202)
T ss_pred             HhcC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHH--HHHHHHHhc--CCCEEE
Confidence            5444   999999999885433222 233444443   35899999999999653322211  111111111  136789


Q ss_pred             EeeCCCCCCHHHHHHHHHHhhh
Q 024325          244 MVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       244 ~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      .+||++|.|++++|++|.+.+.
T Consensus       142 etSAktg~gV~e~F~~l~~~~~  163 (202)
T cd04120         142 EASAKDNFNVDEIFLKLVDDIL  163 (202)
T ss_pred             EecCCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999987653

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04121 Rab40 Rab40 subfamily

Probab=99.80  E-value=4.5e-18  Score=137.79  Aligned_cols=153  Identities=20%  Similarity=0.174  Sum_probs=98.3

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCC-CceeEeeE--EE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-GLTQTINF--FK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~-gtt~~~~~--~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~  165 (269)
                      ..+|+++|..|+|||||+.++....   +..+++ ..+.+...  ..   ....+.+|||||..          .+..+.
T Consensus         6 ~~KivviG~~~vGKTsll~~~~~~~---~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~----------~~~~l~   72 (189)
T cd04121           6 LLKFLLVGDSDVGKGEILASLQDGS---TESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQG----------RFCTIF   72 (189)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCC---CCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcH----------HHHHHH
Confidence            4689999999999999999999762   222222 22233221  11   12568899999962          223344


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh--hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325          166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  242 (269)
Q Consensus       166 ~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  242 (269)
                      ..|..   .+|++++|+|.....+... ..+++.+..  .+.|+++|.||+|+.......  ....+.....   ...++
T Consensus        73 ~~~~~---~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~--~~~~~~~a~~---~~~~~  144 (189)
T cd04121          73 RSYSR---GAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVA--TEQAQAYAER---NGMTF  144 (189)
T ss_pred             HHHhc---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCC--HHHHHHHHHH---cCCEE
Confidence            44443   4999999999875433222 234444443  368999999999996432111  1111121221   24689


Q ss_pred             EEeeCCCCCCHHHHHHHHHHhhh
Q 024325          243 MMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       243 i~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      +++||++|.|++++|++|.+.+.
T Consensus       145 ~e~SAk~g~~V~~~F~~l~~~i~  167 (189)
T cd04121         145 FEVSPLCNFNITESFTELARIVL  167 (189)
T ss_pred             EEecCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999987553

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>PLN03127 Elongation factor Tu; Provisional

Probab=99.80  E-value=4.2e-18  Score=154.50  Aligned_cols=161  Identities=20%  Similarity=0.241  Sum_probs=112.8

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCc-----Cccc---------cCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcch
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQW-----GVVR---------TSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYA  153 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~-----~~~~---------~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~  153 (269)
                      ...+|+++|++++|||||+++|++..     ....         ....+|+|.+.....   .+..+.|+||||+..   
T Consensus        60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~---  136 (447)
T PLN03127         60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD---  136 (447)
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc---
Confidence            45789999999999999999997320     1011         122378888875433   355799999999832   


Q ss_pred             hHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCc-EEEEEecCCCCCchHHHHH-HHHHHHH
Q 024325          154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVARR-AMQIEES  231 (269)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p-~iiv~NK~Dl~~~~~~~~~-~~~~~~~  231 (269)
                                ++.........+|++++|+|+..+...++.+++..+...++| +++|+||+|+.+..+..+. ...+.+.
T Consensus       137 ----------f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~  206 (447)
T PLN03127        137 ----------YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDEELLELVEMELREL  206 (447)
T ss_pred             ----------hHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHH
Confidence                      233333344459999999999988888889999999989999 5789999999864443332 2344444


Q ss_pred             HHhcC--CCCCCeEEeeCC---CCCC-------HHHHHHHHHHhh
Q 024325          232 LKANN--SLVQPVMMVSSK---SGAG-------IRSLRTVLSKIA  264 (269)
Q Consensus       232 ~~~~~--~~~~~vi~vSa~---~g~g-------i~~L~~~i~~~~  264 (269)
                      +....  ....|++++||.   +|.|       +..|++.|...+
T Consensus       207 l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l  251 (447)
T PLN03127        207 LSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI  251 (447)
T ss_pred             HHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence            43321  224788999886   5555       788888887764

>PRK00049 elongation factor Tu; Reviewed

Probab=99.79  E-value=4.6e-18  Score=152.69  Aligned_cols=161  Identities=20%  Similarity=0.266  Sum_probs=116.5

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcC-----ccc---------cCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcch
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWG-----VVR---------TSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYA  153 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~-----~~~---------~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~  153 (269)
                      ...+|+++|++++|||||+++|++...     ...         .....|+|.+.....   .+..+.++||||+     
T Consensus        11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~-----   85 (396)
T PRK00049         11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGH-----   85 (396)
T ss_pred             CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCH-----
Confidence            346899999999999999999987310     000         111567887765433   2567999999996     


Q ss_pred             hHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEE-EEEecCCCCCchHH-HHHHHHHHHH
Q 024325          154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ-VVLTKTDTVFPIDV-ARRAMQIEES  231 (269)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~i-iv~NK~Dl~~~~~~-~~~~~~~~~~  231 (269)
                              ..+.......+..+|++++|+|+..+...++.+++..+...++|.+ +++||+|+.+..+. ......+...
T Consensus        86 --------~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~  157 (396)
T PRK00049         86 --------ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVREL  157 (396)
T ss_pred             --------HHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHH
Confidence                    2344555566677999999999998888888889998888899976 58999999864332 2233455555


Q ss_pred             HHhcC--CCCCCeEEeeCCCCC----------CHHHHHHHHHHhh
Q 024325          232 LKANN--SLVQPVMMVSSKSGA----------GIRSLRTVLSKIA  264 (269)
Q Consensus       232 ~~~~~--~~~~~vi~vSa~~g~----------gi~~L~~~i~~~~  264 (269)
                      +....  ....|++++||++|.          |+..|++.|...+
T Consensus       158 l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~  202 (396)
T PRK00049        158 LSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI  202 (396)
T ss_pred             HHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence            54432  235789999999975          6788888887654

>cd04125 RabA_like RabA-like subfamily

Probab=99.79  E-value=6.5e-18  Score=136.79  Aligned_cols=153  Identities=22%  Similarity=0.194  Sum_probs=94.1

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccc-cCCCCCceeEeeEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVR-TSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~-~s~~~gtt~~~~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      ++|+++|.+|+|||||++++.+. .... ..+..+.+........   ...+.+|||||...          +..+...+
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~----------~~~~~~~~   69 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTED-EFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQER----------FRSLNNSY   69 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC-CCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHH----------HHhhHHHH
Confidence            37999999999999999999987 2211 1222222222222222   23578999999621          12222333


Q ss_pred             HhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHH-HHHHHHHHHHHhcCCCCCCeE
Q 024325          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLVQPVM  243 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~vi  243 (269)
                      +   ..+|++++|+|.+...+... ..++..+..   ...|+++|+||+|+....... .....+.   ..   ...+++
T Consensus        70 ~---~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~---~~---~~~~~~  140 (188)
T cd04125          70 Y---RGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFC---DS---LNIPFF  140 (188)
T ss_pred             c---cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHH---HH---cCCeEE
Confidence            3   34999999999875322111 123333333   247899999999987432211 1111111   11   135899


Q ss_pred             EeeCCCCCCHHHHHHHHHHhhh
Q 024325          244 MVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       244 ~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      ++||++|.|+++++++|.+.+.
T Consensus       141 evSa~~~~~i~~~f~~l~~~~~  162 (188)
T cd04125         141 ETSAKQSINVEEAFILLVKLII  162 (188)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999987764

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04126 Rab20 Rab20 subfamily

Probab=99.79  E-value=3.2e-18  Score=141.63  Aligned_cols=156  Identities=17%  Similarity=0.145  Sum_probs=94.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE-EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcc
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF-KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR  172 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~-~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~  172 (269)
                      +|+++|.+|+|||||+++++.. ...  ...+.+..+.... .....+.+|||||...          +..+...|+.  
T Consensus         2 KIvivG~~~vGKTSLi~r~~~~-~f~--~~~~Tig~~~~~~~~~~~~l~iwDt~G~e~----------~~~l~~~~~~--   66 (220)
T cd04126           2 KVVLLGDMNVGKTSLLHRYMER-RFK--DTVSTVGGAFYLKQWGPYNISIWDTAGREQ----------FHGLGSMYCR--   66 (220)
T ss_pred             EEEEECCCCCcHHHHHHHHhcC-CCC--CCCCccceEEEEEEeeEEEEEEEeCCCccc----------chhhHHHHhc--
Confidence            6899999999999999999987 322  2222222222211 1245689999999632          1233334433  


Q ss_pred             cccceEEEEEeCCCCCCcch--HHHHHHHHh--hCCcEEEEEecCCCCCchH----------------HHH-HHHHHHHH
Q 024325          173 VSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFPID----------------VAR-RAMQIEES  231 (269)
Q Consensus       173 ~~~d~vl~vid~~~~~~~~~--~~~~~~l~~--~~~p~iiv~NK~Dl~~~~~----------------~~~-~~~~~~~~  231 (269)
                       .+|++++|+|.+...+...  ..+......  .+.|+++|.||+|+.....                ... ..+.....
T Consensus        67 -~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~  145 (220)
T cd04126          67 -GAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAF  145 (220)
T ss_pred             -cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHH
Confidence             4999999999885432222  122222222  3579999999999975100                000 00111111


Q ss_pred             HHhcCC-----------CCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          232 LKANNS-----------LVQPVMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       232 ~~~~~~-----------~~~~vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      ......           ...+++++||++|.|+++++..+.+.+.
T Consensus       146 a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~  190 (220)
T cd04126         146 YKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL  190 (220)
T ss_pred             HHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            111110           1257999999999999999999987653

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04134 Rho3 Rho3 subfamily

Probab=99.79  E-value=3.7e-18  Score=138.42  Aligned_cols=155  Identities=16%  Similarity=0.085  Sum_probs=95.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCce-eEee-EEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTIN-FFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt-~~~~-~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      +|+++|.+|+|||||++++++.. .  ...+.+|. .+.. ...   ....+.+|||||....          ..+...+
T Consensus         2 kivivG~~~vGKTsli~~~~~~~-~--~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~----------~~l~~~~   68 (189)
T cd04134           2 KVVVLGDGACGKTSLLNVFTRGY-F--PQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEF----------DRLRSLS   68 (189)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC-C--CCccCCcceeeeEEEEEECCEEEEEEEEECCCChhc----------ccccccc
Confidence            69999999999999999999872 2  22222222 1111 111   1346899999996321          1122222


Q ss_pred             HhcccccceEEEEEeCCCCCCcch--HHHHHHHHh--hCCcEEEEEecCCCCCchHHHHHH----------HHHHHHHHh
Q 024325          169 VSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFPIDVARRA----------MQIEESLKA  234 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~~~~~~~--~~~~~~l~~--~~~p~iiv~NK~Dl~~~~~~~~~~----------~~~~~~~~~  234 (269)
                         ...+|++++|+|.....+...  ..++..+..  .+.|+++|.||+|+..........          ....+....
T Consensus        69 ---~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  145 (189)
T cd04134          69 ---YADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKR  145 (189)
T ss_pred             ---ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHH
Confidence               234899999998875322222  234444443  268999999999997654322111          011111111


Q ss_pred             cCCCCCCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325          235 NNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       235 ~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      .  ...+++++||++|.|+++++.+|.+.+..
T Consensus       146 ~--~~~~~~e~SAk~~~~v~e~f~~l~~~~~~  175 (189)
T cd04134         146 I--NALRYLECSAKLNRGVNEAFTEAARVALN  175 (189)
T ss_pred             c--CCCEEEEccCCcCCCHHHHHHHHHHHHhc
Confidence            1  13578999999999999999999887643

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04177 RSR1 RSR1 subgroup

Probab=99.79  E-value=2e-18  Score=137.23  Aligned_cols=151  Identities=14%  Similarity=0.126  Sum_probs=94.1

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe--eEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~--~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      ++|+++|.+|+|||||++++.+..   ....+.+++.+.  .....   ...+.+|||||...          +..+.+.
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~   68 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNV---FIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQ----------FTAMREL   68 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCC---CCcccCCcchheEEEEEEECCEEEEEEEEeCCCccc----------chhhhHH
Confidence            479999999999999999999762   223333333322  11111   24678999999633          1233333


Q ss_pred             HHhcccccceEEEEEeCCCCCCcch-HHHHHHHH----hhCCcEEEEEecCCCCCchHHHH-HHHHHHHHHHhcCCCCCC
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFPIDVAR-RAMQIEESLKANNSLVQP  241 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~----~~~~p~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~  241 (269)
                      ++..   ++.+++|+|.+....... ..+...+.    ..+.|+++|+||+|+........ ....+.   ...  ...+
T Consensus        69 ~~~~---~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~---~~~--~~~~  140 (168)
T cd04177          69 YIKS---GQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLS---QQW--GNVP  140 (168)
T ss_pred             HHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHH---HHc--CCce
Confidence            3333   889999999874322111 12222222    24689999999999975432211 111111   111  1368


Q ss_pred             eEEeeCCCCCCHHHHHHHHHHhh
Q 024325          242 VMMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       242 vi~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      ++++||++|.|+++++++|...+
T Consensus       141 ~~~~SA~~~~~i~~~f~~i~~~~  163 (168)
T cd04177         141 FYETSARKRTNVDEVFIDLVRQI  163 (168)
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHH
Confidence            99999999999999999998754

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.79  E-value=1.8e-18  Score=164.06  Aligned_cols=151  Identities=16%  Similarity=0.148  Sum_probs=102.1

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCcccc----------CCCCCc----------------------eeEeeE---EE
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRT----------SDKPGL----------------------TQTINF---FK  135 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~----------s~~~gt----------------------t~~~~~---~~  135 (269)
                      ..++|+++|++|+|||||+|+|+.... ..+          +...|+                      |.+..+   ..
T Consensus        23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~-~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~  101 (632)
T PRK05506         23 SLLRFITCGSVDDGKSTLIGRLLYDSK-MIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT  101 (632)
T ss_pred             CeeEEEEECCCCCChHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence            346899999999999999999997522 222          112333                      333322   12


Q ss_pred             eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhC-CcEEEEEecCC
Q 024325          136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ-TKYQVVLTKTD  214 (269)
Q Consensus       136 ~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~-~p~iiv~NK~D  214 (269)
                      .+..+.|+||||+.             .+..........+|++++|+|+..+...++.+.+..+...+ .|+++|+||+|
T Consensus       102 ~~~~~~liDtPG~~-------------~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D  168 (632)
T PRK05506        102 PKRKFIVADTPGHE-------------QYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMD  168 (632)
T ss_pred             CCceEEEEECCChH-------------HHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecc
Confidence            35679999999962             22233334455699999999999888888777777777666 46889999999


Q ss_pred             CCCc--hHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHH
Q 024325          215 TVFP--IDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRS  255 (269)
Q Consensus       215 l~~~--~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~  255 (269)
                      +.+.  .........+.+.+........+++++||++|.|+++
T Consensus       169 ~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        169 LVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             cccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            9852  2233333444444433322346799999999999984

>cd00876 Ras Ras family

Probab=99.79  E-value=2.8e-18  Score=134.59  Aligned_cols=149  Identities=14%  Similarity=0.085  Sum_probs=95.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE--EEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~--~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      +|+++|++|+|||||++++++..   ..+.+.+++.+...  ...   ...+.+||+||...          +..+...+
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~~~   67 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGT---FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEE----------FSAMRDLY   67 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCC---CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHH----------HHHHHHHH
Confidence            48999999999999999999872   44555555544321  112   34688999999632          12222333


Q ss_pred             HhcccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeE
Q 024325          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM  243 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi  243 (269)
                      +.   .+|++++|+|........+ ..+...+..    ...|+++|+||+|+.......  .+.........   ..+++
T Consensus        68 ~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~---~~~~~  139 (160)
T cd00876          68 IR---QGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVS--KEEGKALAKEW---GCPFI  139 (160)
T ss_pred             Hh---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceec--HHHHHHHHHHc---CCcEE
Confidence            33   3899999999875322111 122222222    368999999999998632211  11222222221   36899


Q ss_pred             EeeCCCCCCHHHHHHHHHHh
Q 024325          244 MVSSKSGAGIRSLRTVLSKI  263 (269)
Q Consensus       244 ~vSa~~g~gi~~L~~~i~~~  263 (269)
                      ++||++|.|+++++++|.+.
T Consensus       140 ~~S~~~~~~i~~l~~~l~~~  159 (160)
T cd00876         140 ETSAKDNINIDEVFKLLVRE  159 (160)
T ss_pred             EeccCCCCCHHHHHHHHHhh
Confidence            99999999999999999865

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04117 Rab15 Rab15 subfamily

Probab=99.79  E-value=8.6e-18  Score=132.74  Aligned_cols=149  Identities=15%  Similarity=0.209  Sum_probs=93.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee--EEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~--~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      +|+++|++|+|||||++++++.. . .....|....+..  ....   ...+.+|||||...          +..+...+
T Consensus         2 ki~vvG~~~~GKTsli~~~~~~~-~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~----------~~~~~~~~   69 (161)
T cd04117           2 RLLLIGDSGVGKTCLLCRFTDNE-F-HSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQER----------YQTITKQY   69 (161)
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC-C-CCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHh----------HHhhHHHH
Confidence            69999999999999999998762 2 1222222222221  1111   24578999999521          12333333


Q ss_pred             HhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHH-HHHHHHHHHHHhcCCCCCCeE
Q 024325          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLVQPVM  243 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~vi  243 (269)
                      ..   .+|++++|+|..+.-+... ..++..+..   .+.|+++|.||+|+....... .....+.+   .   ...+++
T Consensus        70 ~~---~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~---~---~~~~~~  140 (161)
T cd04117          70 YR---RAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAK---E---YGMDFF  140 (161)
T ss_pred             hc---CCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHH---H---cCCEEE
Confidence            33   4899999999875322111 233333322   257999999999997543221 11222221   1   236789


Q ss_pred             EeeCCCCCCHHHHHHHHHHh
Q 024325          244 MVSSKSGAGIRSLRTVLSKI  263 (269)
Q Consensus       244 ~vSa~~g~gi~~L~~~i~~~  263 (269)
                      ++||++|.|+++++.+|.+.
T Consensus       141 e~Sa~~~~~v~~~f~~l~~~  160 (161)
T cd04117         141 ETSACTNSNIKESFTRLTEL  160 (161)
T ss_pred             EEeCCCCCCHHHHHHHHHhh
Confidence            99999999999999999764

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.79  E-value=3.1e-18  Score=137.06  Aligned_cols=153  Identities=14%  Similarity=0.019  Sum_probs=93.5

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe---eEEE--eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~---~~~~--~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      .+|+++|.+|+|||||+.+++...   +...+..|..+.   ....  ....+.+|||||...          +..+...
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~---f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~   68 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNA---FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED----------YDRLRPL   68 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCC---CCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchh----------hhhhhhh
Confidence            479999999999999999998762   233333333222   1111  124688999999622          1222233


Q ss_pred             HHhcccccceEEEEEeCCCCCCcchH--HHHHHHHh--hCCcEEEEEecCCCCCchH-HHHH---------HHHHHHHHH
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMER--SQTKYQVVLTKTDTVFPID-VARR---------AMQIEESLK  233 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~~--~~~~~l~~--~~~p~iiv~NK~Dl~~~~~-~~~~---------~~~~~~~~~  233 (269)
                      ++   ..+|++++|+|.++..+....  .++..+..  .+.|+++|.||+|+.+... ....         .+...+...
T Consensus        69 ~~---~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~  145 (174)
T cd01871          69 SY---PQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK  145 (174)
T ss_pred             hc---CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHH
Confidence            33   349999999999754322221  24443433  2589999999999964321 1000         011111111


Q ss_pred             hcCCCCCCeEEeeCCCCCCHHHHHHHHHHh
Q 024325          234 ANNSLVQPVMMVSSKSGAGIRSLRTVLSKI  263 (269)
Q Consensus       234 ~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~  263 (269)
                      ..  ...+++++||++|+|++++++.+.+.
T Consensus       146 ~~--~~~~~~e~Sa~~~~~i~~~f~~l~~~  173 (174)
T cd01871         146 EI--GAVKYLECSALTQKGLKTVFDEAIRA  173 (174)
T ss_pred             Hc--CCcEEEEecccccCCHHHHHHHHHHh
Confidence            11  12478999999999999999998753

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.79  E-value=5.8e-18  Score=151.47  Aligned_cols=159  Identities=20%  Similarity=0.289  Sum_probs=119.5

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe------CCcEEEEcCCCCCCcchhHHHHHHHHHH
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL------GTKLCLVDLPGYGFAYAKEEVKDAWEEL  164 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~------~~~~~lvDtpG~~~~~~~~~~~~~~~~~  164 (269)
                      ..|.|+++|+...|||||+..+.+. .+ .....-|.|+++--+..      .+.+.|+||||+             ..+
T Consensus         4 R~PvVtimGHVDHGKTtLLD~IR~t-~V-a~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGH-------------eAF   68 (509)
T COG0532           4 RPPVVTIMGHVDHGKTTLLDKIRKT-NV-AAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGH-------------EAF   68 (509)
T ss_pred             CCCEEEEeCcccCCccchhhhHhcC-cc-ccccCCceeeEeeeEEEEeccCCCceEEEEcCCcH-------------HHH
Confidence            3589999999999999999999987 33 33445568888743322      368999999996             233


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHH--HHhcCCCCCCe
Q 024325          165 VKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEES--LKANNSLVQPV  242 (269)
Q Consensus       165 ~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~~v  242 (269)
                      ...-.+...-+|.+++|+|+.+++.++..+-++.++..++|+++++||+|+++.. ..+....+.+.  ..+.+.....+
T Consensus        69 t~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~n-p~~v~~el~~~gl~~E~~gg~v~~  147 (509)
T COG0532          69 TAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEAN-PDKVKQELQEYGLVPEEWGGDVIF  147 (509)
T ss_pred             HHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCC-HHHHHHHHHHcCCCHhhcCCceEE
Confidence            3333355666999999999999999999999999999999999999999999542 23333333221  11112334678


Q ss_pred             EEeeCCCCCCHHHHHHHHHHhhh
Q 024325          243 MMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       243 i~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      +++||++|+|+++|++.|.-..+
T Consensus       148 VpvSA~tg~Gi~eLL~~ill~ae  170 (509)
T COG0532         148 VPVSAKTGEGIDELLELILLLAE  170 (509)
T ss_pred             EEeeccCCCCHHHHHHHHHHHHH
Confidence            99999999999999998876543

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.79  E-value=7.1e-18  Score=151.57  Aligned_cols=158  Identities=21%  Similarity=0.277  Sum_probs=110.5

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCc-----Ccc---------ccCCCCCceeEeeEEEe---CCcEEEEcCCCCCCcchh
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQW-----GVV---------RTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAK  154 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~-----~~~---------~~s~~~gtt~~~~~~~~---~~~~~lvDtpG~~~~~~~  154 (269)
                      ..+|+++|+.++|||||+++|++..     ...         ......|+|.+......   +..+.+|||||+      
T Consensus        12 ~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh------   85 (394)
T TIGR00485        12 HVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGH------   85 (394)
T ss_pred             eEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCch------
Confidence            4689999999999999999998420     000         01123678877644332   456999999997      


Q ss_pred             HHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEE-EEEecCCCCCchHHHH-HHHHHHHHH
Q 024325          155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ-VVLTKTDTVFPIDVAR-RAMQIEESL  232 (269)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~i-iv~NK~Dl~~~~~~~~-~~~~~~~~~  232 (269)
                             ..+...+......+|.+++|+|+..+...++.+++..+...++|.+ +|+||+|+.+..+..+ ....+...+
T Consensus        86 -------~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l  158 (394)
T TIGR00485        86 -------ADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELL  158 (394)
T ss_pred             -------HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHHHHHHHHHH
Confidence                   2334455556667999999999998888888888888888888866 6899999986544322 233555555


Q ss_pred             HhcCC--CCCCeEEeeCCCCC--------CHHHHHHHHHH
Q 024325          233 KANNS--LVQPVMMVSSKSGA--------GIRSLRTVLSK  262 (269)
Q Consensus       233 ~~~~~--~~~~vi~vSa~~g~--------gi~~L~~~i~~  262 (269)
                      .....  ...|++++||++|.        ++..|++.|..
T Consensus       159 ~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~  198 (394)
T TIGR00485       159 SEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDE  198 (394)
T ss_pred             HhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHh
Confidence            54322  23789999999885        34566666554

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.78  E-value=5.2e-18  Score=136.21  Aligned_cols=153  Identities=15%  Similarity=0.118  Sum_probs=94.5

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeE-----eeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~-----~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      .+|+++|.+|+|||||++++++..   .+..+++++.+     ......+..+.+|||||...          +..+...
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~~   68 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGH---FVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDE----------YSILPQK   68 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCC---CccccCcchhhhEEEEEEECCEEEEEEEEECCChHh----------hHHHHHH
Confidence            379999999999999999999762   23333333322     11111234578999999632          1122222


Q ss_pred             HHhcccccceEEEEEeCCCCCCcch-HHHHHHH-H---hhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLM-E---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  242 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l-~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  242 (269)
                      +..   .++.+++++|.+....... ..+...+ .   ..+.|+++|+||+|+........  .........   ...++
T Consensus        69 ~~~---~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~--~~~~~~~~~---~~~~~  140 (180)
T cd04137          69 YSI---GIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVST--EEGKELAES---WGAAF  140 (180)
T ss_pred             HHh---hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCH--HHHHHHHHH---cCCeE
Confidence            222   3899999999875322111 1222222 2   23679999999999874322211  111111221   23689


Q ss_pred             EEeeCCCCCCHHHHHHHHHHhhhh
Q 024325          243 MMVSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       243 i~vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      +++||++|.|+++++.+|.+.+..
T Consensus       141 ~~~Sa~~~~gv~~l~~~l~~~~~~  164 (180)
T cd04137         141 LESSARENENVEEAFELLIEEIEK  164 (180)
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999887653

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.78  E-value=3e-18  Score=136.77  Aligned_cols=152  Identities=16%  Similarity=0.016  Sum_probs=92.9

Q ss_pred             EEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEEe--CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325           95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (269)
Q Consensus        95 v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~  169 (269)
                      |+++|.+|+|||||++++++..   +...+..+..+..   ....  ...+.+|||||....          ..+...+ 
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~-   66 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNA---FPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDY----------DRLRPLS-   66 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCC---CCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCccc----------chhchhh-
Confidence            5899999999999999999872   2223222332211   1111  235889999996321          1122222 


Q ss_pred             hcccccceEEEEEeCCCCCCcch--HHHHHHHHh--hCCcEEEEEecCCCCCchHHHH-H---------HHHHHHHHHhc
Q 024325          170 STRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFPIDVAR-R---------AMQIEESLKAN  235 (269)
Q Consensus       170 ~~~~~~d~vl~vid~~~~~~~~~--~~~~~~l~~--~~~p~iiv~NK~Dl~~~~~~~~-~---------~~~~~~~~~~~  235 (269)
                        ...+|++++|+|.....+...  ..++..+..  .+.|+++|.||+|+........ .         .+.........
T Consensus        67 --~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  144 (174)
T smart00174       67 --YPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRI  144 (174)
T ss_pred             --cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHc
Confidence              234899999999875322221  124444443  3689999999999975322110 0         01111111111


Q ss_pred             CCCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325          236 NSLVQPVMMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       236 ~~~~~~vi~vSa~~g~gi~~L~~~i~~~~  264 (269)
                        ...+++++||++|.|++++++.|.+.+
T Consensus       145 --~~~~~~e~Sa~~~~~v~~lf~~l~~~~  171 (174)
T smart00174      145 --GAVKYLECSALTQEGVREVFEEAIRAA  171 (174)
T ss_pred             --CCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence              124789999999999999999998765

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd01892 Miro2 Miro2 subfamily

Probab=99.78  E-value=3.3e-18  Score=136.26  Aligned_cols=155  Identities=19%  Similarity=0.126  Sum_probs=94.9

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeE-e--eEEE-eC--CcEEEEcCCCCCCcchhHHHHHHHHHH
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-I--NFFK-LG--TKLCLVDLPGYGFAYAKEEVKDAWEEL  164 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~-~--~~~~-~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~  164 (269)
                      +.++|+++|.+|+|||||++++++. ... +..+.+|+.. .  .... .+  ..+.+|||+|....          ..+
T Consensus         3 ~~~kv~~vG~~~vGKTsli~~~~~~-~f~-~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~----------~~~   70 (169)
T cd01892           3 NVFLCFVLGAKGSGKSALLRAFLGR-SFS-LNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVA----------ILL   70 (169)
T ss_pred             eEEEEEEECCCCCcHHHHHHHHhCC-CCC-cccCCCccCcceEEEEEEECCeEEEEEEEecCCcccc----------ccc
Confidence            4578999999999999999999987 221 2444444432 1  1111 23  35789999996432          111


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCcch-HHHHHHHH-hhCCcEEEEEecCCCCCchHH-HHHHHHHHHHHHhcCCCCCC
Q 024325          165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME-RSQTKYQVVLTKTDTVFPIDV-ARRAMQIEESLKANNSLVQP  241 (269)
Q Consensus       165 ~~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~-~~~~p~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~  241 (269)
                      ...|+   ..+|++++|+|++...+... ..+++.+. ..++|+++|+||+|+.+.... ....+.+.+.+    . ..+
T Consensus        71 ~~~~~---~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~----~-~~~  142 (169)
T cd01892          71 NDAEL---AACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKL----G-LPP  142 (169)
T ss_pred             chhhh---hcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccccccccccCHHHHHHHc----C-CCC
Confidence            22222   23999999999875311111 12333221 136899999999999643221 01112222211    1 124


Q ss_pred             eEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          242 VMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       242 vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      ++++||++|.|++++++.|.+.+.
T Consensus       143 ~~~~Sa~~~~~v~~lf~~l~~~~~  166 (169)
T cd01892         143 PLHFSSKLGDSSNELFTKLATAAQ  166 (169)
T ss_pred             CEEEEeccCccHHHHHHHHHHHhh
Confidence            689999999999999999987653

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.78  E-value=5.5e-18  Score=142.79  Aligned_cols=151  Identities=14%  Similarity=0.179  Sum_probs=95.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee--EEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~--~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      +|+++|.+|+|||||++++++..   +...+.+|+.+..  .+..   ...+.+|||+|...          +..+...+
T Consensus         2 KVvvlG~~gvGKTSLi~r~~~~~---f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~----------~~~~~~~~   68 (247)
T cd04143           2 RMVVLGASKVGKTAIVSRFLGGR---FEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHP----------FPAMRRLS   68 (247)
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC---CCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChh----------hhHHHHHH
Confidence            69999999999999999998762   2334444554432  1122   24678999999632          11222222


Q ss_pred             HhcccccceEEEEEeCCCCCCcch-HHHHHHHHh------------hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhc
Q 024325          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER------------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN  235 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~------------~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~  235 (269)
                      +   ..+|++++|+|.++..+... ..+++.+..            .+.|+++|+||+|+.......  ...+.+.+...
T Consensus        69 ~---~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~--~~ei~~~~~~~  143 (247)
T cd04143          69 I---LTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQ--RDEVEQLVGGD  143 (247)
T ss_pred             h---ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccC--HHHHHHHHHhc
Confidence            2   23899999999875322111 223333321            258999999999997422111  12222222211


Q ss_pred             CCCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325          236 NSLVQPVMMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       236 ~~~~~~vi~vSa~~g~gi~~L~~~i~~~~  264 (269)
                        ...+++++||++|.|+++++++|...+
T Consensus       144 --~~~~~~evSAktg~gI~elf~~L~~~~  170 (247)
T cd04143         144 --ENCAYFEVSAKKNSNLDEMFRALFSLA  170 (247)
T ss_pred             --CCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence              145789999999999999999998765

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.78  E-value=1.4e-17  Score=132.64  Aligned_cols=153  Identities=18%  Similarity=0.181  Sum_probs=94.5

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee--EEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~--~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      .+|+++|++|+|||||++++++.. . .....+....+..  ...   ....+.+|||||...      .   ...+...
T Consensus         3 ~ki~vvG~~~vGKTsli~~~~~~~-~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~------~---~~~~~~~   71 (170)
T cd04115           3 FKIIVIGDSNVGKTCLTYRFCAGR-F-PERTEATIGVDFRERTVEIDGERIKVQLWDTAGQER------F---RKSMVQH   71 (170)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCC-C-CCccccceeEEEEEEEEEECCeEEEEEEEeCCChHH------H---HHhhHHH
Confidence            589999999999999999998762 1 1111222222221  111   124688999999521      0   0122333


Q ss_pred             HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHH-HHHHHHHHHHHhcCCCCCC
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLVQP  241 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~  241 (269)
                      +.   ..+|++++|+|...+..... ..++..+..    .++|+++|+||+|+....... ...+.+.   ..   ...+
T Consensus        72 ~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~---~~---~~~~  142 (170)
T cd04115          72 YY---RNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFA---DA---HSMP  142 (170)
T ss_pred             hh---cCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHH---HH---cCCc
Confidence            33   34899999999975433222 233333333    358999999999986543221 1111221   11   2478


Q ss_pred             eEEeeCCC---CCCHHHHHHHHHHhhh
Q 024325          242 VMMVSSKS---GAGIRSLRTVLSKIAR  265 (269)
Q Consensus       242 vi~vSa~~---g~gi~~L~~~i~~~~~  265 (269)
                      ++++||++   +.|+++++..+.+.++
T Consensus       143 ~~e~Sa~~~~~~~~i~~~f~~l~~~~~  169 (170)
T cd04115         143 LFETSAKDPSENDHVEAIFMTLAHKLK  169 (170)
T ss_pred             EEEEeccCCcCCCCHHHHHHHHHHHhh
Confidence            99999999   8999999998877653

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.78  E-value=4.6e-18  Score=153.14  Aligned_cols=149  Identities=15%  Similarity=0.155  Sum_probs=101.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccc-------------cC------------------CCCCceeEeeEEE---eCCc
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVR-------------TS------------------DKPGLTQTINFFK---LGTK  139 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~-------------~s------------------~~~gtt~~~~~~~---~~~~  139 (269)
                      +|+++|++++|||||+++|+...+...             .+                  ...|.|.+..+..   .+..
T Consensus         2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~   81 (406)
T TIGR02034         2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRK   81 (406)
T ss_pred             eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCeE
Confidence            699999999999999999875421100             00                  1234455554332   3567


Q ss_pred             EEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCC-cEEEEEecCCCCCc
Q 024325          140 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT-KYQVVLTKTDTVFP  218 (269)
Q Consensus       140 ~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~-p~iiv~NK~Dl~~~  218 (269)
                      +.++||||+             ..+.......+..+|++++|+|+..+...++.+.+..+...++ ++++|+||+|+...
T Consensus        82 ~~liDtPGh-------------~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~  148 (406)
T TIGR02034        82 FIVADTPGH-------------EQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDY  148 (406)
T ss_pred             EEEEeCCCH-------------HHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccc
Confidence            999999996             2233333344556999999999999888888877777777666 48889999999753


Q ss_pred             hH--HHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHH
Q 024325          219 ID--VARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRS  255 (269)
Q Consensus       219 ~~--~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~  255 (269)
                      ..  .......+...+........+++++||++|+|+++
T Consensus       149 ~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       149 DEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence            21  22233344433333322346899999999999986

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>cd04111 Rab39 Rab39 subfamily

Probab=99.78  E-value=6.7e-18  Score=139.31  Aligned_cols=152  Identities=20%  Similarity=0.240  Sum_probs=95.0

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE--EE--eC--CcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FK--LG--TKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~--~~--~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      .+|+++|.+|+|||||++++++. ..... ..+.++.+...  ..  .+  ..+.+|||||..          .+..+..
T Consensus         3 ~KIvvvG~~~vGKTsLi~~l~~~-~~~~~-~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~----------~~~~~~~   70 (211)
T cd04111           3 FRLIVIGDSTVGKSSLLKRFTEG-RFAEV-SDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQE----------RFRSITR   70 (211)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC-CCCCC-CCceeceEEEEEEEEECCCCEEEEEEEeCCcch----------hHHHHHH
Confidence            58999999999999999999987 32222 12222233211  11  12  358899999962          2233334


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHH-HHHHHHHHHHHhcCCCCC
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLVQ  240 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~  240 (269)
                      .++.   .+|++++|+|.++..+... ..++..+..    ...|+++|.||+|+....... .....+.+   .   ...
T Consensus        71 ~~~~---~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~---~---~~~  141 (211)
T cd04111          71 SYYR---NSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAK---D---LGM  141 (211)
T ss_pred             HHhc---CCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHH---H---hCC
Confidence            4443   3899999999875322111 123333322    246789999999997632221 11122221   1   137


Q ss_pred             CeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          241 PVMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       241 ~vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      +++++||++|+|+++++++|.+.+.
T Consensus       142 ~~~e~Sak~g~~v~e~f~~l~~~~~  166 (211)
T cd04111         142 KYIETSARTGDNVEEAFELLTQEIY  166 (211)
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            8999999999999999999987653

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.78  E-value=9.8e-18  Score=152.24  Aligned_cols=152  Identities=20%  Similarity=0.293  Sum_probs=101.4

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCc-c----------------------c------cCCCCCceeEeeEEE---eCC
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGV-V----------------------R------TSDKPGLTQTINFFK---LGT  138 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~-~----------------------~------~s~~~gtt~~~~~~~---~~~  138 (269)
                      ...+|+++|++++|||||+++|+..... .                      .      .....|+|.+..+..   .+.
T Consensus         6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~   85 (426)
T TIGR00483         6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKY   85 (426)
T ss_pred             ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCe
Confidence            4568999999999999999999853110 0                      0      012457787775443   356


Q ss_pred             cEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCC---CCcchHHHHHHHHhhC-CcEEEEEecCC
Q 024325          139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG---VKPRDHELISLMERSQ-TKYQVVLTKTD  214 (269)
Q Consensus       139 ~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~---~~~~~~~~~~~l~~~~-~p~iiv~NK~D  214 (269)
                      .+.+|||||+             ..+...+......+|++++|+|++.+   ...+..+.+..+...+ .|+++|+||+|
T Consensus        86 ~i~iiDtpGh-------------~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~D  152 (426)
T TIGR00483        86 EVTIVDCPGH-------------RDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMD  152 (426)
T ss_pred             EEEEEECCCH-------------HHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChh
Confidence            7999999996             22334444455669999999999876   4444444444444444 46899999999


Q ss_pred             CCCc--hHHHHHHHHHHHHHHhcCC--CCCCeEEeeCCCCCCHHH
Q 024325          215 TVFP--IDVARRAMQIEESLKANNS--LVQPVMMVSSKSGAGIRS  255 (269)
Q Consensus       215 l~~~--~~~~~~~~~~~~~~~~~~~--~~~~vi~vSa~~g~gi~~  255 (269)
                      +.+.  .........+.+.+.....  ...+++++||++|+|+++
T Consensus       153 l~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~  197 (426)
T TIGR00483       153 SVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK  197 (426)
T ss_pred             ccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence            9742  2333334455555443321  246899999999999986

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.78  E-value=4.8e-18  Score=134.53  Aligned_cols=152  Identities=18%  Similarity=0.159  Sum_probs=92.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe--eEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~--~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      +|+++|.+|+|||||+++++..   .+...+++++...  .....   ...+.+|||||......         .....+
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~---~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------~~~~~~   68 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTK---RFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADT---------EQLERS   68 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhC---ccccccCCChHHhceEEEEECCEEEEEEEEECCCCccccc---------chHHHH
Confidence            4899999999999999999875   2234444443221  11111   23578999999753100         011122


Q ss_pred             HhcccccceEEEEEeCCCCCCcch-HHHHHHHHh-----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  242 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~-----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  242 (269)
                      +.   .+|++++|+|.+...+... ..++..+..     .+.|+++|+||+|+........  .........   ...++
T Consensus        69 ~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~--~~~~~~~~~---~~~~~  140 (165)
T cd04146          69 IR---WADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVST--EEGEKLASE---LGCLF  140 (165)
T ss_pred             HH---hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCH--HHHHHHHHH---cCCEE
Confidence            22   3899999999975422221 223333332     3689999999999854321111  111111111   13689


Q ss_pred             EEeeCCCCC-CHHHHHHHHHHhhh
Q 024325          243 MMVSSKSGA-GIRSLRTVLSKIAR  265 (269)
Q Consensus       243 i~vSa~~g~-gi~~L~~~i~~~~~  265 (269)
                      +++||++|. |++++++.|.+.+.
T Consensus       141 ~e~Sa~~~~~~v~~~f~~l~~~~~  164 (165)
T cd04146         141 FEVSAAEDYDGVHSVFHELCREVR  164 (165)
T ss_pred             EEeCCCCCchhHHHHHHHHHHHHh
Confidence            999999995 99999999987653

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04133 Rop_like Rop subfamily

Probab=99.78  E-value=4.8e-18  Score=136.14  Aligned_cols=153  Identities=17%  Similarity=0.056  Sum_probs=97.1

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EE--EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FF--KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~--~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      .+|+++|.+|+|||||+.+++...   +...+..|..+..   ..  .....+.+|||+|...          +..+...
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~---f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~----------~~~~~~~   68 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNK---FPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQED----------YNRLRPL   68 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCC---CCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCcc----------ccccchh
Confidence            479999999999999999999762   2333333332211   11  1135688999999632          2233333


Q ss_pred             HHhcccccceEEEEEeCCCCCCcch--HHHHHHHHh--hCCcEEEEEecCCCCCchHH--------HHHHHHHHHHHHhc
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFPIDV--------ARRAMQIEESLKAN  235 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~--~~~~~~l~~--~~~p~iiv~NK~Dl~~~~~~--------~~~~~~~~~~~~~~  235 (269)
                      +++   .++++++|+|..+..+...  ..++..+..  .+.|+++|.||+|+.+....        .-..+...+.... 
T Consensus        69 ~~~---~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~-  144 (176)
T cd04133          69 SYR---GADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQ-  144 (176)
T ss_pred             hcC---CCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHH-
Confidence            333   4999999999875444333  235555543  36899999999999643210        0001111111111 


Q ss_pred             CCCCC-CeEEeeCCCCCCHHHHHHHHHHhh
Q 024325          236 NSLVQ-PVMMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       236 ~~~~~-~vi~vSa~~g~gi~~L~~~i~~~~  264 (269)
                        ... +++++||++|.|++++++.+.+.+
T Consensus       145 --~~~~~~~E~SAk~~~nV~~~F~~~~~~~  172 (176)
T cd04133         145 --IGAAAYIECSSKTQQNVKAVFDAAIKVV  172 (176)
T ss_pred             --cCCCEEEECCCCcccCHHHHHHHHHHHH
Confidence              133 689999999999999999998865

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.78  E-value=1.1e-17  Score=133.50  Aligned_cols=154  Identities=12%  Similarity=0.056  Sum_probs=92.9

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe---eEE--EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFF--KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~---~~~--~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      .+|+++|++|+|||||++++.+..   +...+.++..+.   .+.  .....+.+|||||....          ..+...
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~~~   68 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQ---FPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY----------DRLRPL   68 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCC---CCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhh----------hhcccc
Confidence            479999999999999999999862   222232232221   111  12345789999996321          111111


Q ss_pred             HHhcccccceEEEEEeCCCCCCcch--HHHHHHHHh--hCCcEEEEEecCCCCCchHHHHHH----------HHHHHHHH
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFPIDVARRA----------MQIEESLK  233 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~--~~~~~~l~~--~~~p~iiv~NK~Dl~~~~~~~~~~----------~~~~~~~~  233 (269)
                         ....+|++++|+|.....+...  ..++..+..  .+.|+++|+||+|+..........          ...++...
T Consensus        69 ---~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~  145 (175)
T cd01870          69 ---SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMAN  145 (175)
T ss_pred             ---ccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHH
Confidence               2345899999998864321111  123333433  368999999999987543221111          01111111


Q ss_pred             hcCCCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325          234 ANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       234 ~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      ..  ...+++++||++|.|+++++++|.+.+
T Consensus       146 ~~--~~~~~~~~Sa~~~~~v~~lf~~l~~~~  174 (175)
T cd01870         146 KI--GAFGYMECSAKTKEGVREVFEMATRAA  174 (175)
T ss_pred             Hc--CCcEEEEeccccCcCHHHHHHHHHHHh
Confidence            11  134789999999999999999998654

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.78  E-value=8.9e-18  Score=157.28  Aligned_cols=157  Identities=20%  Similarity=0.226  Sum_probs=103.3

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCc-------cccC------CCCCceeEeeEE---Ee--C---CcEEEEcCCCCCC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGV-------VRTS------DKPGLTQTINFF---KL--G---TKLCLVDLPGYGF  150 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~-------~~~s------~~~gtt~~~~~~---~~--~---~~~~lvDtpG~~~  150 (269)
                      ..+++++|++++|||||+++|+.....       ..+.      ...|.|.+....   +.  +   ..+.+|||||+.+
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d   82 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   82 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence            348999999999999999999864210       0011      123555443211   11  2   5689999999832


Q ss_pred             cchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHH
Q 024325          151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE  230 (269)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~  230 (269)
                                +......++   ..+|++++|+|++.+...++...+..+...++|+++|+||+|+.... .....+.+.+
T Consensus        83 ----------F~~~v~~~l---~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~-~~~~~~el~~  148 (595)
T TIGR01393        83 ----------FSYEVSRSL---AACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSAD-PERVKKEIEE  148 (595)
T ss_pred             ----------HHHHHHHHH---HhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccC-HHHHHHHHHH
Confidence                      112222333   34999999999998777766555555555689999999999986432 2222233333


Q ss_pred             HHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          231 SLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       231 ~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      .+.   ....+++++||++|.|+++|+++|.+.+.
T Consensus       149 ~lg---~~~~~vi~vSAktG~GI~~Lle~I~~~lp  180 (595)
T TIGR01393       149 VIG---LDASEAILASAKTGIGIEEILEAIVKRVP  180 (595)
T ss_pred             HhC---CCcceEEEeeccCCCCHHHHHHHHHHhCC
Confidence            221   11235899999999999999999988764

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>cd04135 Tc10 TC10 subfamily

Probab=99.77  E-value=1.1e-17  Score=133.49  Aligned_cols=153  Identities=13%  Similarity=0.019  Sum_probs=93.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee--EEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~--~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      +|+++|++|+|||||++++++..   +...+.++..+..  ....   ...+.+|||||....          ..+...+
T Consensus         2 ki~i~G~~~~GKTsl~~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~   68 (174)
T cd04135           2 KCVVVGDGAVGKTCLLMSYANDA---FPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDY----------DRLRPLS   68 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC---CCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccc----------ccccccc
Confidence            79999999999999999999872   2333333433321  1111   234779999996432          1111111


Q ss_pred             HhcccccceEEEEEeCCCCCCcch--HHHHHHHHh--hCCcEEEEEecCCCCCchHHHHHH----------HHHHHHHHh
Q 024325          169 VSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFPIDVARRA----------MQIEESLKA  234 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~~~~~~~--~~~~~~l~~--~~~p~iiv~NK~Dl~~~~~~~~~~----------~~~~~~~~~  234 (269)
                         ...+|++++|+|..+.....+  ..++..+..  .+.|+++|+||+|+.+........          .........
T Consensus        69 ---~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  145 (174)
T cd04135          69 ---YPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKE  145 (174)
T ss_pred             ---CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHH
Confidence               234899999999875322222  234444433  468999999999986543211100          111111121


Q ss_pred             cCCCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325          235 NNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       235 ~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      .  ...+++++||++|.|++++++.+.+.+
T Consensus       146 ~--~~~~~~e~Sa~~~~gi~~~f~~~~~~~  173 (174)
T cd04135         146 I--GAHCYVECSALTQKGLKTVFDEAILAI  173 (174)
T ss_pred             c--CCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence            1  124689999999999999999987653

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.77  E-value=5.6e-18  Score=134.27  Aligned_cols=153  Identities=14%  Similarity=0.159  Sum_probs=91.8

Q ss_pred             EEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccc
Q 024325           95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVS  174 (269)
Q Consensus        95 v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (269)
                      |+++|.+|+|||||++++++........+..|.. .......+..+.+|||||....          ..+...++.   .
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~-~~~i~~~~~~l~i~Dt~G~~~~----------~~~~~~~~~---~   67 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFN-SVAIPTQDAIMELLEIGGSQNL----------RKYWKRYLS---G   67 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccccccCCcc-eEEEeeCCeEEEEEECCCCcch----------hHHHHHHHh---h
Confidence            7899999999999999999863111111222211 1122233567899999996321          122223333   3


Q ss_pred             cceEEEEEeCCCCCCcch-HHHHHHH-Hh-hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCC--
Q 024325          175 LKRVCLLIDTKWGVKPRD-HELISLM-ER-SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS--  249 (269)
Q Consensus       175 ~d~vl~vid~~~~~~~~~-~~~~~~l-~~-~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~--  249 (269)
                      +|++++|+|+++...... ..++..+ .. .++|+++|.||+|+............+.- .........+++++||++  
T Consensus        68 ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~Sa~~~~  146 (164)
T cd04162          68 SQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELEL-EPIARGRRWILQGTSLDDDG  146 (164)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCC-hhhcCCCceEEEEeeecCCC
Confidence            999999999875321111 1222222 22 46899999999999765433322222110 001112346688898888  


Q ss_pred             ----CCCHHHHHHHHHH
Q 024325          250 ----GAGIRSLRTVLSK  262 (269)
Q Consensus       250 ----g~gi~~L~~~i~~  262 (269)
                          ++|++++++.+..
T Consensus       147 s~~~~~~v~~~~~~~~~  163 (164)
T cd04162         147 SPSRMEAVKDLLSQLIN  163 (164)
T ss_pred             ChhHHHHHHHHHHHHhc
Confidence                9999999998764

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.77  E-value=5.7e-18  Score=135.28  Aligned_cols=151  Identities=12%  Similarity=0.044  Sum_probs=94.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE--EEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~--~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      +|+++|.+|+|||||++++.+.   .+...+++|+.+...  ...   ...+.+|||||....          ..+... 
T Consensus         2 k~~i~G~~~~GKtsl~~~~~~~---~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~-   67 (173)
T cd04130           2 KCVLVGDGAVGKTSLIVSYTTN---GYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEF----------DKLRPL-   67 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHhC---CCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhh----------cccccc-
Confidence            6899999999999999999876   234555556544321  111   245789999997321          111111 


Q ss_pred             HhcccccceEEEEEeCCCCCCcch--HHHHHHHHh--hCCcEEEEEecCCCCCchHHHH----------HHHHHHHHHHh
Q 024325          169 VSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFPIDVAR----------RAMQIEESLKA  234 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~~~~~~~--~~~~~~l~~--~~~p~iiv~NK~Dl~~~~~~~~----------~~~~~~~~~~~  234 (269)
                        ....+|++++|+|..+..+...  ..++..+..  .+.|+++|+||+|+........          ..+........
T Consensus        68 --~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~  145 (173)
T cd04130          68 --CYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEK  145 (173)
T ss_pred             --ccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHH
Confidence              2345899999999875432222  234544543  3589999999999975321100          00111111111


Q ss_pred             cCCCCCCeEEeeCCCCCCHHHHHHHHHH
Q 024325          235 NNSLVQPVMMVSSKSGAGIRSLRTVLSK  262 (269)
Q Consensus       235 ~~~~~~~vi~vSa~~g~gi~~L~~~i~~  262 (269)
                      .  ...+++++||++|.|++++++.+.-
T Consensus       146 ~--~~~~~~e~Sa~~~~~v~~lf~~~~~  171 (173)
T cd04130         146 I--GACEYIECSALTQKNLKEVFDTAIL  171 (173)
T ss_pred             h--CCCeEEEEeCCCCCCHHHHHHHHHh
Confidence            1  1247999999999999999988753

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.77  E-value=6.2e-18  Score=154.72  Aligned_cols=153  Identities=18%  Similarity=0.170  Sum_probs=101.3

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccc-------------cCC------------------CCCceeEeeEE---Ee
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVR-------------TSD------------------KPGLTQTINFF---KL  136 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~-------------~s~------------------~~gtt~~~~~~---~~  136 (269)
                      ..++|+++|++++|||||+++|+...+...             .+.                  ..|.|.+..+.   ..
T Consensus        26 ~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~  105 (474)
T PRK05124         26 SLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTE  105 (474)
T ss_pred             CceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEeccC
Confidence            457999999999999999999886521100             000                  12344454322   23


Q ss_pred             CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhC-CcEEEEEecCCC
Q 024325          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ-TKYQVVLTKTDT  215 (269)
Q Consensus       137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~-~p~iiv~NK~Dl  215 (269)
                      +..+.|+||||+.             .+.......+..+|++++|+|+..+...++.+.+..+...+ .|+++|+||+|+
T Consensus       106 ~~~i~~iDTPGh~-------------~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~  172 (474)
T PRK05124        106 KRKFIIADTPGHE-------------QYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDL  172 (474)
T ss_pred             CcEEEEEECCCcH-------------HHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeecc
Confidence            5689999999952             22223333445699999999999888777766666666555 468899999999


Q ss_pred             CCch--HHHHHHHHHHHHHHhcC-CCCCCeEEeeCCCCCCHHHH
Q 024325          216 VFPI--DVARRAMQIEESLKANN-SLVQPVMMVSSKSGAGIRSL  256 (269)
Q Consensus       216 ~~~~--~~~~~~~~~~~~~~~~~-~~~~~vi~vSa~~g~gi~~L  256 (269)
                      ....  ........+...+.... ....+++++||++|+|++++
T Consensus       173 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        173 VDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             ccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            8432  23333344443333222 22578999999999999864

>PLN03108 Rab family protein; Provisional

Probab=99.77  E-value=3.9e-17  Score=134.65  Aligned_cols=154  Identities=16%  Similarity=0.135  Sum_probs=93.5

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCcccc-CCCCCceeEeeEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRT-SDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~-s~~~gtt~~~~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      ..+|+++|.+|+|||||+|+|++.. .... .+..+.+........   ...+.+|||||..          .+..+...
T Consensus         6 ~~kivivG~~gvGKStLi~~l~~~~-~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~----------~~~~~~~~   74 (210)
T PLN03108          6 LFKYIIIGDTGVGKSCLLLQFTDKR-FQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE----------SFRSITRS   74 (210)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcH----------HHHHHHHH
Confidence            3689999999999999999999862 2211 111122211111111   2357899999952          11222333


Q ss_pred             HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeE
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM  243 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi  243 (269)
                      ++.   .+|++++|+|......... ..++..+..   ...|+++|.||+|+.......  .....+....   ...+++
T Consensus        75 ~~~---~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~--~~~~~~~~~~---~~~~~~  146 (210)
T PLN03108         75 YYR---GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS--TEEGEQFAKE---HGLIFM  146 (210)
T ss_pred             Hhc---cCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCC--HHHHHHHHHH---cCCEEE
Confidence            333   3899999999875322221 133333322   358999999999997532111  0111111221   246899


Q ss_pred             EeeCCCCCCHHHHHHHHHHhh
Q 024325          244 MVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       244 ~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      ++||++|.|++++|.++.+.+
T Consensus       147 e~Sa~~~~~v~e~f~~l~~~~  167 (210)
T PLN03108        147 EASAKTAQNVEEAFIKTAAKI  167 (210)
T ss_pred             EEeCCCCCCHHHHHHHHHHHH
Confidence            999999999999998887655

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.77  E-value=1.6e-17  Score=133.86  Aligned_cols=153  Identities=14%  Similarity=0.099  Sum_probs=95.3

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe-----eEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-----NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~-----~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      ..+|+++|.+|+|||||++++....   +...+.+|..+.     ........+.+|||+|...          +..+..
T Consensus         5 ~~KivvvGd~~vGKTsli~~~~~~~---f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~----------~~~~~~   71 (182)
T cd04172           5 KCKIVVVGDSQCGKTALLHVFAKDC---FPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY----------YDNVRP   71 (182)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCC---CCCccCCceeeeeEEEEEECCEEEEEEEEECCCchh----------hHhhhh
Confidence            4689999999999999999998762   233333333221     1111134588999999621          223333


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcch--HHHHHHHHhh--CCcEEEEEecCCCCCchHHH-H--------H-HHHHHHHH
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPIDVA-R--------R-AMQIEESL  232 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~--~~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~-~--------~-~~~~~~~~  232 (269)
                      .++   ..+|++++|+|.+...+...  ..++..+...  +.|+++|.||+|+....... .        . .+...+..
T Consensus        72 ~~~---~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a  148 (182)
T cd04172          72 LSY---PDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMA  148 (182)
T ss_pred             hhc---CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHH
Confidence            333   34999999999875433322  2344444432  58999999999986421100 0        0 01111111


Q ss_pred             HhcCCCC-CCeEEeeCCCCCC-HHHHHHHHHHh
Q 024325          233 KANNSLV-QPVMMVSSKSGAG-IRSLRTVLSKI  263 (269)
Q Consensus       233 ~~~~~~~-~~vi~vSa~~g~g-i~~L~~~i~~~  263 (269)
                      ..   .+ .+++++||++|+| ++++|+.+...
T Consensus       149 ~~---~~~~~~~E~SAk~~~n~v~~~F~~~~~~  178 (182)
T cd04172         149 KQ---IGAATYIECSALQSENSVRDIFHVATLA  178 (182)
T ss_pred             HH---cCCCEEEECCcCCCCCCHHHHHHHHHHH
Confidence            11   13 4799999999998 99999988774

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.77  E-value=2e-17  Score=137.71  Aligned_cols=154  Identities=16%  Similarity=0.088  Sum_probs=95.8

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeE-e----eEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-I----NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~-~----~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      ..+|+++|.+|+|||||++++++..   +...+.+|..+ .    ........+.+|||+|..          .+..+..
T Consensus        13 ~~KIvvvGd~~VGKTsLi~r~~~~~---F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e----------~~~~~~~   79 (232)
T cd04174          13 RCKLVLVGDVQCGKTAMLQVLAKDC---YPETYVPTVFENYTAGLETEEQRVELSLWDTSGSP----------YYDNVRP   79 (232)
T ss_pred             eEEEEEECCCCCcHHHHHHHHhcCC---CCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCch----------hhHHHHH
Confidence            4689999999999999999998762   23333333221 1    111123568899999962          2233334


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcch--HHHHHHHHh--hCCcEEEEEecCCCCCchH-HH--------HH-HHHHHHHH
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFPID-VA--------RR-AMQIEESL  232 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~--~~~~~~l~~--~~~p~iiv~NK~Dl~~~~~-~~--------~~-~~~~~~~~  232 (269)
                      .|+.   .+|++++|+|.+...+...  ..++..+..  .+.|+++|.||+|+..... ..        .+ .....+..
T Consensus        80 ~~~~---~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a  156 (232)
T cd04174          80 LCYS---DSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALA  156 (232)
T ss_pred             HHcC---CCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHH
Confidence            4443   4999999999975433322  234444443  2579999999999853210 00        00 01111222


Q ss_pred             HhcCCCCC-CeEEeeCCCCC-CHHHHHHHHHHhh
Q 024325          233 KANNSLVQ-PVMMVSSKSGA-GIRSLRTVLSKIA  264 (269)
Q Consensus       233 ~~~~~~~~-~vi~vSa~~g~-gi~~L~~~i~~~~  264 (269)
                      ..   .+. +++++||++|+ |++++|..+...+
T Consensus       157 ~~---~~~~~~~EtSAktg~~~V~e~F~~~~~~~  187 (232)
T cd04174         157 KQ---LGAEVYLECSAFTSEKSIHSIFRSASLLC  187 (232)
T ss_pred             HH---cCCCEEEEccCCcCCcCHHHHHHHHHHHH
Confidence            21   234 58999999998 8999999887654

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04148 RGK RGK subfamily

Probab=99.77  E-value=1.2e-17  Score=138.82  Aligned_cols=151  Identities=13%  Similarity=0.047  Sum_probs=93.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCcee-E-----eeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ-T-----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~-~-----~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      +|+++|.+|+|||||++++++.. .. ...++.+.. +     +.+......+.+|||||...            .+...
T Consensus         2 KI~lvG~~gvGKTsLi~~~~~~~-~~-~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~------------~~~~~   67 (221)
T cd04148           2 RVVMLGSPGVGKSSLASQFTSGE-YD-DHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM------------WTEDS   67 (221)
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC-cC-ccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch------------HHHhH
Confidence            79999999999999999997652 11 122221111 1     11111245688999999741            01111


Q ss_pred             HHhcccccceEEEEEeCCCCCCcc-hHHHHHHHHh----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  242 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~-~~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  242 (269)
                      +...  .+|++++|+|+.+..... ..+++..+..    .++|+++|+||+|+.........  ........   ...++
T Consensus        68 ~~~~--~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~--~~~~~a~~---~~~~~  140 (221)
T cd04148          68 CMQY--QGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQ--EGRACAVV---FDCKF  140 (221)
T ss_pred             Hhhc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHH--HHHHHHHH---cCCeE
Confidence            1110  489999999997532221 1234444433    35899999999999754322111  11111111   24678


Q ss_pred             EEeeCCCCCCHHHHHHHHHHhhh
Q 024325          243 MMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       243 i~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      +++||++|.|+++++++|.+.+.
T Consensus       141 ~e~SA~~~~gv~~l~~~l~~~~~  163 (221)
T cd04148         141 IETSAGLQHNVDELLEGIVRQIR  163 (221)
T ss_pred             EEecCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999988764

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd01875 RhoG RhoG subfamily

Probab=99.77  E-value=1.4e-17  Score=135.24  Aligned_cols=154  Identities=13%  Similarity=0.036  Sum_probs=95.2

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe-e-EEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-N-FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~-~-~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      .+|+++|..|+|||||++++....   +...+..|..+. . ....   ...+.+|||||..          .+..+...
T Consensus         4 ~ki~~vG~~~vGKTsli~~~~~~~---f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e----------~~~~l~~~   70 (191)
T cd01875           4 IKCVVVGDGAVGKTCLLICYTTNA---FPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQE----------EYDRLRTL   70 (191)
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCC---CCcCCCCceEeeeEEEEEECCEEEEEEEEECCCch----------hhhhhhhh
Confidence            589999999999999999998762   223333333221 1 1111   2458899999962          22333344


Q ss_pred             HHhcccccceEEEEEeCCCCCCcchH--HHHHHHHh--hCCcEEEEEecCCCCCchHHHHHH----------HHHHHHHH
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMER--SQTKYQVVLTKTDTVFPIDVARRA----------MQIEESLK  233 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~~--~~~~~l~~--~~~p~iiv~NK~Dl~~~~~~~~~~----------~~~~~~~~  233 (269)
                      |+.   .+|++++|+|..+..+....  .+...+..  .+.|+++|.||+|+..........          +.......
T Consensus        71 ~~~---~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~  147 (191)
T cd01875          71 SYP---QTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAK  147 (191)
T ss_pred             hcc---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHH
Confidence            433   49999999998753322222  23333332  368999999999996532211100          01111111


Q ss_pred             hcCCCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325          234 ANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       234 ~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      ..  ...+++++||++|+|+++++.+|.+.+
T Consensus       148 ~~--~~~~~~e~SAk~g~~v~e~f~~l~~~~  176 (191)
T cd01875         148 QI--HAVKYLECSALNQDGVKEVFAEAVRAV  176 (191)
T ss_pred             Hc--CCcEEEEeCCCCCCCHHHHHHHHHHHH
Confidence            11  125799999999999999999998765

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>PLN03126 Elongation factor Tu; Provisional

Probab=99.77  E-value=2.7e-17  Score=150.05  Aligned_cols=149  Identities=20%  Similarity=0.219  Sum_probs=106.9

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcCcCc--------------cccCCCCCceeEeeE---EEeCCcEEEEcCCCCCCcc
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGV--------------VRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAY  152 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~--------------~~~s~~~gtt~~~~~---~~~~~~~~lvDtpG~~~~~  152 (269)
                      .+..+|+++|++++|||||+++|++....              .......|+|.+..+   ...+..+.++||||+    
T Consensus        79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh----  154 (478)
T PLN03126         79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGH----  154 (478)
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCH----
Confidence            34578999999999999999999963110              011223566666543   234678999999996    


Q ss_pred             hhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCc-EEEEEecCCCCCchHHH-HHHHHHHH
Q 024325          153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVA-RRAMQIEE  230 (269)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p-~iiv~NK~Dl~~~~~~~-~~~~~~~~  230 (269)
                               ..+.......+..+|.+++|+|+..+...++.+++..+...++| +++++||+|+.+..+.. .....+..
T Consensus       155 ---------~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~  225 (478)
T PLN03126        155 ---------ADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRE  225 (478)
T ss_pred             ---------HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHH
Confidence                     23444445555569999999999988888888888888888998 77899999998754432 23345666


Q ss_pred             HHHhc--CCCCCCeEEeeCCCCC
Q 024325          231 SLKAN--NSLVQPVMMVSSKSGA  251 (269)
Q Consensus       231 ~~~~~--~~~~~~vi~vSa~~g~  251 (269)
                      .+...  .....|++++||.+|.
T Consensus       226 ~l~~~g~~~~~~~~vp~Sa~~g~  248 (478)
T PLN03126        226 LLSSYEFPGDDIPIISGSALLAL  248 (478)
T ss_pred             HHHhcCCCcCcceEEEEEccccc
Confidence            55543  2235789999999884

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.77  E-value=2.1e-17  Score=147.25  Aligned_cols=159  Identities=21%  Similarity=0.311  Sum_probs=121.5

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE----eCCcEEEEcCCCCCCcchhHHHHHHHHHHH
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~----~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~  165 (269)
                      ...|.|.++|+...|||||+.+|.+. .++ .+..-|.|+++--|.    .|..++|.||||+             ..+.
T Consensus       151 ~RpPVVTiMGHVDHGKTTLLD~lRks-~VA-A~E~GGITQhIGAF~V~~p~G~~iTFLDTPGH-------------aAF~  215 (683)
T KOG1145|consen  151 PRPPVVTIMGHVDHGKTTLLDALRKS-SVA-AGEAGGITQHIGAFTVTLPSGKSITFLDTPGH-------------AAFS  215 (683)
T ss_pred             CCCCeEEEeecccCChhhHHHHHhhC-cee-hhhcCCccceeceEEEecCCCCEEEEecCCcH-------------HHHH
Confidence            35689999999999999999999988 333 345567898875443    4788999999996             2233


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHH--HHhcCCCCCCeE
Q 024325          166 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEES--LKANNSLVQPVM  243 (269)
Q Consensus       166 ~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~~vi  243 (269)
                      ..--++....|.+++|+.+.++..++..+.++..+..++|+++++||||.... ..++..+.+...  .-+..+...+++
T Consensus       216 aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a-~pekv~~eL~~~gi~~E~~GGdVQvi  294 (683)
T KOG1145|consen  216 AMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGA-NPEKVKRELLSQGIVVEDLGGDVQVI  294 (683)
T ss_pred             HHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCC-CHHHHHHHHHHcCccHHHcCCceeEE
Confidence            33335666689999999999999999999999999999999999999998754 333433333221  011123467899


Q ss_pred             EeeCCCCCCHHHHHHHHHHhh
Q 024325          244 MVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       244 ~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      ++||++|+|++.|.+.+.-..
T Consensus       295 piSAl~g~nl~~L~eaill~A  315 (683)
T KOG1145|consen  295 PISALTGENLDLLEEAILLLA  315 (683)
T ss_pred             EeecccCCChHHHHHHHHHHH
Confidence            999999999999999886544

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.77  E-value=3.3e-18  Score=133.74  Aligned_cols=156  Identities=16%  Similarity=0.156  Sum_probs=102.1

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccc-cCCC---CCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVR-TSDK---PGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~-~s~~---~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      ..+|+++|..|+|||||+-++.... ... ..+.   .+.|..+.......++.+|||+|.          +.+..+...
T Consensus         5 ~~KvvLLG~~~VGKSSlV~Rfvk~~-F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQ----------ERy~slapM   73 (200)
T KOG0092|consen    5 EFKVVLLGDSGVGKSSLVLRFVKDQ-FHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQ----------ERYHSLAPM   73 (200)
T ss_pred             eEEEEEECCCCCCchhhhhhhhhCc-cccccccccccEEEEEEEEeCCcEEEEEEEEcCCc----------ccccccccc
Confidence            3689999999999999999987762 111 1111   122333333333467889999997          334667777


Q ss_pred             HHhcccccceEEEEEeCCCCCCcc-hHHHHHHHHhhCCc---EEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeE
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMERSQTK---YQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM  243 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~-~~~~~~~l~~~~~p---~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi  243 (269)
                      |++.   ++++|+|.|..+.-+.. -..+++.|.....|   +.+|.||+|+....++..  ++.+....   ..+.+++
T Consensus        74 YyRg---A~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~--~ea~~yAe---~~gll~~  145 (200)
T KOG0092|consen   74 YYRG---ANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEF--EEAQAYAE---SQGLLFF  145 (200)
T ss_pred             eecC---CcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccH--HHHHHHHH---hcCCEEE
Confidence            7776   89999999987532221 13455556554334   456999999987332221  11111111   2367899


Q ss_pred             EeeCCCCCCHHHHHHHHHHhhhh
Q 024325          244 MVSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       244 ~vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      .+|||+|.|+++++..|.+.+..
T Consensus       146 ETSAKTg~Nv~~if~~Ia~~lp~  168 (200)
T KOG0092|consen  146 ETSAKTGENVNEIFQAIAEKLPC  168 (200)
T ss_pred             EEecccccCHHHHHHHHHHhccC
Confidence            99999999999999999887643

>cd04131 Rnd Rnd subfamily

Probab=99.76  E-value=2e-17  Score=132.84  Aligned_cols=152  Identities=16%  Similarity=0.116  Sum_probs=93.7

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe-e-EEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-N-FFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~-~-~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      .+|+++|.+|+|||||++++.+..   +...+.+|..+. . ...   ....+.+|||||...          +..+...
T Consensus         2 ~Kiv~vG~~~vGKTsli~~~~~~~---f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~----------~~~~~~~   68 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAKDC---YPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPY----------YDNVRPL   68 (178)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCc---CCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchh----------hhhcchh
Confidence            479999999999999999999862   233443343221 1 111   134588999999621          1222233


Q ss_pred             HHhcccccceEEEEEeCCCCCCcch--HHHHHHHHh--hCCcEEEEEecCCCCCchHHH-H--------H-HHHHHHHHH
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFPIDVA-R--------R-AMQIEESLK  233 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~--~~~~~~l~~--~~~p~iiv~NK~Dl~~~~~~~-~--------~-~~~~~~~~~  233 (269)
                      ++   ..+|++++|+|.+...+...  ..++..+..  ...|+++|.||+|+....... .        . .+...+...
T Consensus        69 ~~---~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~  145 (178)
T cd04131          69 CY---PDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAK  145 (178)
T ss_pred             hc---CCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHH
Confidence            32   34899999999875433332  234444443  368999999999986421100 0        0 011111111


Q ss_pred             hcCCCC-CCeEEeeCCCCCC-HHHHHHHHHHh
Q 024325          234 ANNSLV-QPVMMVSSKSGAG-IRSLRTVLSKI  263 (269)
Q Consensus       234 ~~~~~~-~~vi~vSa~~g~g-i~~L~~~i~~~  263 (269)
                      .   .+ .+++++||++|+| ++++|..+.+.
T Consensus       146 ~---~~~~~~~E~SA~~~~~~v~~~F~~~~~~  174 (178)
T cd04131         146 Q---LGAEIYLECSAFTSEKSVRDIFHVATMA  174 (178)
T ss_pred             H---hCCCEEEECccCcCCcCHHHHHHHHHHH
Confidence            1   13 3789999999995 99999988874

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.76  E-value=3.4e-17  Score=153.13  Aligned_cols=159  Identities=21%  Similarity=0.233  Sum_probs=110.1

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCcc----cc----------CCCCCceeEe---eEEEeCCcEEEEcCCCCCCcchhH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVV----RT----------SDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKE  155 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~----~~----------s~~~gtt~~~---~~~~~~~~~~lvDtpG~~~~~~~~  155 (269)
                      .+|+++|+.++|||||+++|+......    .+          ....|.|-..   .+.+.+..+.+|||||+.+     
T Consensus         2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~D-----   76 (594)
T TIGR01394         2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHAD-----   76 (594)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHH-----
Confidence            379999999999999999998631110    00          0122344332   2344578899999999722     


Q ss_pred             HHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhc
Q 024325          156 EVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN  235 (269)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~  235 (269)
                              +.......+..+|.+++|+|+..+...+...++..+...++|+++|+||+|+.... .......+.+.+...
T Consensus        77 --------F~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~-~~~v~~ei~~l~~~~  147 (594)
T TIGR01394        77 --------FGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSAR-PDEVVDEVFDLFAEL  147 (594)
T ss_pred             --------HHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcC-HHHHHHHHHHHHHhh
Confidence                    22222223334999999999998887888888888888899999999999986532 223333444433321


Q ss_pred             ----CCCCCCeEEeeCCCCC----------CHHHHHHHHHHhhh
Q 024325          236 ----NSLVQPVMMVSSKSGA----------GIRSLRTVLSKIAR  265 (269)
Q Consensus       236 ----~~~~~~vi~vSa~~g~----------gi~~L~~~i~~~~~  265 (269)
                          .....|++++||++|.          |++.|++.|.+.+.
T Consensus       148 g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP  191 (594)
T TIGR01394       148 GADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP  191 (594)
T ss_pred             ccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence                1224689999999996          89999999988764

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.75  E-value=3e-17  Score=134.04  Aligned_cols=145  Identities=12%  Similarity=0.044  Sum_probs=92.0

Q ss_pred             EcCCCCChHHHHHHHhcCcCccccCCCCCce-eEe--eEEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhc
Q 024325           98 AGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTI--NFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST  171 (269)
Q Consensus        98 vG~~~~GKSsLin~l~~~~~~~~~s~~~gtt-~~~--~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~  171 (269)
                      +|.+|+|||||+++++...   +...+..|. .+.  ..+.   ....+.+|||||..          .+..+...|++.
T Consensus         1 vG~~~vGKTsLi~r~~~~~---f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e----------~~~~l~~~~~~~   67 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGE---FEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQE----------KFGGLRDGYYIQ   67 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCC---CCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCch----------hhhhhhHHHhcC
Confidence            5999999999999998652   222222222 122  1111   24568999999962          223344444443


Q ss_pred             ccccceEEEEEeCCCCCCcch-HHHHHHHHh--hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCC
Q 024325          172 RVSLKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSK  248 (269)
Q Consensus       172 ~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~  248 (269)
                         +|++++|+|.....+... ..++..+..  .++|+++|.||+|+.......+.. .+   ..   ....+++++||+
T Consensus        68 ---ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~-~~---~~---~~~~~~~e~SAk  137 (200)
T smart00176       68 ---GQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKSI-TF---HR---KKNLQYYDISAK  137 (200)
T ss_pred             ---CCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCHHHH-HH---HH---HcCCEEEEEeCC
Confidence               899999999986433222 234444443  368999999999986422111111 11   11   124689999999


Q ss_pred             CCCCHHHHHHHHHHhhh
Q 024325          249 SGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       249 ~g~gi~~L~~~i~~~~~  265 (269)
                      +|+||+++|.+|...+.
T Consensus       138 ~~~~v~~~F~~l~~~i~  154 (200)
T smart00176      138 SNYNFEKPFLWLARKLI  154 (200)
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            99999999999987653

Ran is involved in the active transport of proteins through nuclear pores.

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.75  E-value=4.3e-17  Score=152.85  Aligned_cols=158  Identities=20%  Similarity=0.213  Sum_probs=103.8

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCcc-------ccC------CCCCceeEee---EEEe-----CCcEEEEcCCCCC
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVV-------RTS------DKPGLTQTIN---FFKL-----GTKLCLVDLPGYG  149 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~-------~~s------~~~gtt~~~~---~~~~-----~~~~~lvDtpG~~  149 (269)
                      ...+++++|+.++|||||+++|+......       .+.      ...|.|-...   +.+.     +..+.+|||||+.
T Consensus         6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~   85 (600)
T PRK05433          6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV   85 (600)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence            34589999999999999999998631110       000      1223443321   1111     4568999999983


Q ss_pred             CcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHH
Q 024325          150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE  229 (269)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~  229 (269)
                      +.          ......+   ...+|.+++|+|++.+...++...+..+...++|+++|+||+|+.... .....+.+.
T Consensus        86 dF----------~~~v~~s---l~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~-~~~v~~ei~  151 (600)
T PRK05433         86 DF----------SYEVSRS---LAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAAD-PERVKQEIE  151 (600)
T ss_pred             HH----------HHHHHHH---HHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCccc-HHHHHHHHH
Confidence            31          1112222   234999999999998877776666666666789999999999986532 222233333


Q ss_pred             HHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          230 ESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       230 ~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      +.+.   ....+++++||++|.|+++|+++|.+.+.
T Consensus       152 ~~lg---~~~~~vi~iSAktG~GI~~Ll~~I~~~lp  184 (600)
T PRK05433        152 DVIG---IDASDAVLVSAKTGIGIEEVLEAIVERIP  184 (600)
T ss_pred             HHhC---CCcceEEEEecCCCCCHHHHHHHHHHhCc
Confidence            3221   11235899999999999999999987664

>PRK10218 GTP-binding protein; Provisional

Probab=99.75  E-value=5.6e-17  Score=151.53  Aligned_cols=159  Identities=20%  Similarity=0.188  Sum_probs=110.4

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccC---------------CCCCceeEee---EEEeCCcEEEEcCCCCCCcch
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTS---------------DKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYA  153 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s---------------~~~gtt~~~~---~~~~~~~~~lvDtpG~~~~~~  153 (269)
                      ..+|+++|+.++|||||+++|+.... .+..               ...|.|....   +.+.+..+.+|||||+.+.  
T Consensus         5 iRnIaIiGh~d~GKTTLv~~Ll~~~g-~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df--   81 (607)
T PRK10218          5 LRNIAIIAHVDHGKTTLVDKLLQQSG-TFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADF--   81 (607)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHHhcC-CcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchh--
Confidence            45899999999999999999986421 1111               1234444432   2234678999999997432  


Q ss_pred             hHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHH
Q 024325          154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLK  233 (269)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~  233 (269)
                              ......++   ..+|.+++|+|+..+...++..++..+...++|.++|+||+|+... ........+.+.+.
T Consensus        82 --------~~~v~~~l---~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a-~~~~vl~ei~~l~~  149 (607)
T PRK10218         82 --------GGEVERVM---SMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGA-RPDWVVDQVFDLFV  149 (607)
T ss_pred             --------HHHHHHHH---HhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCC-chhHHHHHHHHHHh
Confidence                    11122222   3399999999999887777778888888889999999999998753 22333344444432


Q ss_pred             hc----CCCCCCeEEeeCCCCC----------CHHHHHHHHHHhhh
Q 024325          234 AN----NSLVQPVMMVSSKSGA----------GIRSLRTVLSKIAR  265 (269)
Q Consensus       234 ~~----~~~~~~vi~vSa~~g~----------gi~~L~~~i~~~~~  265 (269)
                      ..    .....|++++||++|.          |+..|++.|.+.+.
T Consensus       150 ~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP  195 (607)
T PRK10218        150 NLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP  195 (607)
T ss_pred             ccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence            21    1135789999999998          68899998887654

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.75  E-value=3.5e-17  Score=137.08  Aligned_cols=158  Identities=23%  Similarity=0.251  Sum_probs=104.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCc----cccCC------------CCCceeEe---eEEEeCCcEEEEcCCCCCCcchh
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGV----VRTSD------------KPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAK  154 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~----~~~s~------------~~gtt~~~---~~~~~~~~~~lvDtpG~~~~~~~  154 (269)
                      +|+++|++|+|||||+++|+.....    ..+..            ..+.|...   .+...+..+.+|||||+...   
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f---   77 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDF---   77 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccch---
Confidence            4899999999999999999864211    00111            11122222   22334678999999998431   


Q ss_pred             HHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHh
Q 024325          155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA  234 (269)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~  234 (269)
                             ......   ....+|.+++|+|+..+.......+++.+...++|+++++||+|+.... ..+....+++.+..
T Consensus        78 -------~~~~~~---~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a~-~~~~~~~i~~~~~~  146 (237)
T cd04168          78 -------IAEVER---SLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGAD-LEKVYQEIKEKLSS  146 (237)
T ss_pred             -------HHHHHH---HHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCCC-HHHHHHHHHHHHCC
Confidence                   111112   2233899999999998877777788888888899999999999997532 12222222222210


Q ss_pred             ----------------------------------------------------------cCCCCCCeEEeeCCCCCCHHHH
Q 024325          235 ----------------------------------------------------------NNSLVQPVMMVSSKSGAGIRSL  256 (269)
Q Consensus       235 ----------------------------------------------------------~~~~~~~vi~vSa~~g~gi~~L  256 (269)
                                                                                ......|++.-||.++.|++.|
T Consensus       147 ~~~~~~~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~l  226 (237)
T cd04168         147 DIVPMQKVGLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEEL  226 (237)
T ss_pred             CeEEEECCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHH
Confidence                                                                      0112467888899999999999


Q ss_pred             HHHHHHhhh
Q 024325          257 RTVLSKIAR  265 (269)
Q Consensus       257 ~~~i~~~~~  265 (269)
                      ++.|.+.+.
T Consensus       227 l~~~~~~~p  235 (237)
T cd04168         227 LEGITKLFP  235 (237)
T ss_pred             HHHHHHhcC
Confidence            999988764

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.74  E-value=6.5e-18  Score=135.36  Aligned_cols=156  Identities=19%  Similarity=0.230  Sum_probs=100.1

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHh
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~  170 (269)
                      ...+|+++|..|||||||+++|... ....+.+..|.... .+...+..+.+||.+|...      .+..|..    |+ 
T Consensus        13 ~~~~ililGl~~sGKTtll~~l~~~-~~~~~~pT~g~~~~-~i~~~~~~~~~~d~gG~~~------~~~~w~~----y~-   79 (175)
T PF00025_consen   13 KEIKILILGLDGSGKTTLLNRLKNG-EISETIPTIGFNIE-EIKYKGYSLTIWDLGGQES------FRPLWKS----YF-   79 (175)
T ss_dssp             SEEEEEEEESTTSSHHHHHHHHHSS-SEEEEEEESSEEEE-EEEETTEEEEEEEESSSGG------GGGGGGG----GH-
T ss_pred             cEEEEEEECCCccchHHHHHHhhhc-cccccCcccccccc-eeeeCcEEEEEEecccccc------cccccee----ec-
Confidence            3468999999999999999999876 33332222222211 1222467899999999632      1122332    22 


Q ss_pred             cccccceEEEEEeCCCCCC--cchHHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcC-CCCCCeEE
Q 024325          171 TRVSLKRVCLLIDTKWGVK--PRDHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANN-SLVQPVMM  244 (269)
Q Consensus       171 ~~~~~d~vl~vid~~~~~~--~~~~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~vi~  244 (269)
                        ..+|+++||+|+++...  .....+.+.+..   .++|+++++||.|+.......+....+.  +.... .....++.
T Consensus        80 --~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~--l~~l~~~~~~~v~~  155 (175)
T PF00025_consen   80 --QNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLG--LEKLKNKRPWSVFS  155 (175)
T ss_dssp             --TTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTT--GGGTTSSSCEEEEE
T ss_pred             --cccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhh--hhhcccCCceEEEe
Confidence              24999999999985221  111233333332   3689999999999987655444333221  11121 23566899


Q ss_pred             eeCCCCCCHHHHHHHHHHh
Q 024325          245 VSSKSGAGIRSLRTVLSKI  263 (269)
Q Consensus       245 vSa~~g~gi~~L~~~i~~~  263 (269)
                      +||.+|+|+.+.++||.+.
T Consensus       156 ~sa~~g~Gv~e~l~WL~~~  174 (175)
T PF00025_consen  156 CSAKTGEGVDEGLEWLIEQ  174 (175)
T ss_dssp             EBTTTTBTHHHHHHHHHHH
T ss_pred             eeccCCcCHHHHHHHHHhc
Confidence            9999999999999999875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.74  E-value=8.5e-17  Score=146.21  Aligned_cols=152  Identities=18%  Similarity=0.204  Sum_probs=107.7

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCc-c----------------------ccC------CCCCceeEeeEEE---eCC
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGV-V----------------------RTS------DKPGLTQTINFFK---LGT  138 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~-~----------------------~~s------~~~gtt~~~~~~~---~~~  138 (269)
                      ...+|+++|+.++|||||+.+|+..... .                      .+.      ...|+|.+..+..   .+.
T Consensus         6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~   85 (446)
T PTZ00141          6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY   85 (446)
T ss_pred             ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCe
Confidence            3468999999999999999998752110 0                      011      1345666654333   356


Q ss_pred             cEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCC-------CcchHHHHHHHHhhCCc-EEEEE
Q 024325          139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-------KPRDHELISLMERSQTK-YQVVL  210 (269)
Q Consensus       139 ~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~-------~~~~~~~~~~l~~~~~p-~iiv~  210 (269)
                      .+.|+||||+             ..+.......+..+|.+++|+|+..+.       ..+..+.+..+...++| +|+++
T Consensus        86 ~i~lIDtPGh-------------~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~v  152 (446)
T PTZ00141         86 YFTIIDAPGH-------------RDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCI  152 (446)
T ss_pred             EEEEEECCCh-------------HHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEE
Confidence            7999999996             344555566666799999999998875       35677888888888987 67999


Q ss_pred             ecCCCCC----chHHHHHHHHHHHHHHhcCC--CCCCeEEeeCCCCCCHHH
Q 024325          211 TKTDTVF----PIDVARRAMQIEESLKANNS--LVQPVMMVSSKSGAGIRS  255 (269)
Q Consensus       211 NK~Dl~~----~~~~~~~~~~~~~~~~~~~~--~~~~vi~vSa~~g~gi~~  255 (269)
                      ||+|...    ..........+...+.....  ...|++++||.+|+|+.+
T Consensus       153 NKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        153 NKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             EccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence            9999532    24455556666666654321  247899999999999964

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.74  E-value=5.6e-17  Score=127.80  Aligned_cols=144  Identities=13%  Similarity=0.072  Sum_probs=89.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe--eEEEeC--CcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~--~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~  169 (269)
                      +|+++|.+|+|||||+++++...   +...++.+..+.  .+...+  ..+.+|||+|...               ..+.
T Consensus         2 ki~vvG~~gvGKTsli~~~~~~~---f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~---------------~~~~   63 (158)
T cd04103           2 KLGIVGNLQSGKSALVHRYLTGS---YVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD---------------AQFA   63 (158)
T ss_pred             EEEEECCCCCcHHHHHHHHHhCC---CCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc---------------hhHH
Confidence            69999999999999999887652   112222221111  111122  4588999999732               0122


Q ss_pred             hcccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCC--chHHHH-HHHHHHHHHHhcCCCCCC
Q 024325          170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVF--PIDVAR-RAMQIEESLKANNSLVQP  241 (269)
Q Consensus       170 ~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~--~~~~~~-~~~~~~~~~~~~~~~~~~  241 (269)
                         ..+|++++|+|.++..+.+. ..++..+..    ...|+++|.||+|+..  ...... ....+.+   .  ....+
T Consensus        64 ---~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~---~--~~~~~  135 (158)
T cd04103          64 ---SWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCA---D--MKRCS  135 (158)
T ss_pred             ---hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHH---H--hCCCc
Confidence               23899999999886433333 234444433    2479999999999852  111111 1111211   1  11368


Q ss_pred             eEEeeCCCCCCHHHHHHHHHHh
Q 024325          242 VMMVSSKSGAGIRSLRTVLSKI  263 (269)
Q Consensus       242 vi~vSa~~g~gi~~L~~~i~~~  263 (269)
                      ++++||++|.||++++..+.+.
T Consensus       136 ~~e~SAk~~~~i~~~f~~~~~~  157 (158)
T cd04103         136 YYETCATYGLNVERVFQEAAQK  157 (158)
T ss_pred             EEEEecCCCCCHHHHHHHHHhh
Confidence            9999999999999999998754

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.74  E-value=1.6e-16  Score=120.90  Aligned_cols=155  Identities=15%  Similarity=0.191  Sum_probs=105.7

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR  172 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~  172 (269)
                      .+|.++|..||||||++++|.+. ....+++..|..-.... ..+..+.+||..|..      ..++.|..+.+.     
T Consensus        17 ~riLiLGLdNsGKTti~~kl~~~-~~~~i~pt~gf~Iktl~-~~~~~L~iwDvGGq~------~lr~~W~nYfes-----   83 (185)
T KOG0073|consen   17 VRILILGLDNSGKTTIVKKLLGE-DTDTISPTLGFQIKTLE-YKGYTLNIWDVGGQK------TLRSYWKNYFES-----   83 (185)
T ss_pred             eEEEEEecCCCCchhHHHHhcCC-CccccCCccceeeEEEE-ecceEEEEEEcCCcc------hhHHHHHHhhhc-----
Confidence            58999999999999999999998 55555655443333222 237789999999963      345566544433     


Q ss_pred             cccceEEEEEeCCCCCCcch-HHHH-HHH---HhhCCcEEEEEecCCCCCchHHHHHH--HHHHHHHHhcCCCCCCeEEe
Q 024325          173 VSLKRVCLLIDTKWGVKPRD-HELI-SLM---ERSQTKYQVVLTKTDTVFPIDVARRA--MQIEESLKANNSLVQPVMMV  245 (269)
Q Consensus       173 ~~~d~vl~vid~~~~~~~~~-~~~~-~~l---~~~~~p~iiv~NK~Dl~~~~~~~~~~--~~~~~~~~~~~~~~~~vi~v  245 (269)
                        .|+++||+|+++...-++ ...+ +.+   +-.+.|++++.||.|+...-......  -.+.+..   .....+++-+
T Consensus        84 --tdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~---ks~~~~l~~c  158 (185)
T KOG0073|consen   84 --TDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELA---KSHHWRLVKC  158 (185)
T ss_pred             --cCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhc---cccCceEEEE
Confidence              999999999975432222 1222 222   22468999999999998543333332  2222222   2346889999


Q ss_pred             eCCCCCCHHHHHHHHHHhhh
Q 024325          246 SSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       246 Sa~~g~gi~~L~~~i~~~~~  265 (269)
                      ||.+|+++.+-++||.+.+-
T Consensus       159 s~~tge~l~~gidWL~~~l~  178 (185)
T KOG0073|consen  159 SAVTGEDLLEGIDWLCDDLM  178 (185)
T ss_pred             eccccccHHHHHHHHHHHHH
Confidence            99999999999999887654

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.73  E-value=4.5e-17  Score=138.83  Aligned_cols=141  Identities=20%  Similarity=0.233  Sum_probs=95.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcC----ccccC------------CCCCceeEee---EEEeCCcEEEEcCCCCCCcchh
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWG----VVRTS------------DKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAK  154 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~----~~~~s------------~~~gtt~~~~---~~~~~~~~~lvDtpG~~~~~~~  154 (269)
                      +|+++|++|+|||||+++|+....    ...+.            ...|+|.+..   +...+..+.+|||||+..    
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~d----   76 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVD----   76 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHH----
Confidence            489999999999999999974311    11111            2345565543   333477899999999732    


Q ss_pred             HHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHh
Q 024325          155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA  234 (269)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~  234 (269)
                               +.......+..+|++++|+|+..+....+..++..+...++|+++++||+|+... +.......+++.+..
T Consensus        77 ---------f~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a-~~~~~~~~l~~~l~~  146 (270)
T cd01886          77 ---------FTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGA-DFFRVVEQIREKLGA  146 (270)
T ss_pred             ---------HHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCC-CHHHHHHHHHHHhCC
Confidence                     2222333344499999999999888888888888888889999999999998753 233444555554432


Q ss_pred             cCCCCCCeEEeeCCCC
Q 024325          235 NNSLVQPVMMVSSKSG  250 (269)
Q Consensus       235 ~~~~~~~vi~vSa~~g  250 (269)
                      .  ....++|+|+..+
T Consensus       147 ~--~~~~~~Pisa~~~  160 (270)
T cd01886         147 N--PVPLQLPIGEEDD  160 (270)
T ss_pred             C--ceEEEeccccCCC
Confidence            1  1233678888633

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.73  E-value=6.1e-17  Score=140.57  Aligned_cols=83  Identities=22%  Similarity=0.211  Sum_probs=62.2

Q ss_pred             EEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE--E-------------------------eCCcEEEEcCCC
Q 024325           95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF--K-------------------------LGTKLCLVDLPG  147 (269)
Q Consensus        95 v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~--~-------------------------~~~~~~lvDtpG  147 (269)
                      |+++|.||+|||||+|+|++..  ..++++|++|.+.+..  .                         ....+.+|||||
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~--~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aG   78 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLAD--VEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAG   78 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCC--CcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCC
Confidence            5899999999999999999984  5789999999775421  0                         124689999999


Q ss_pred             CCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCC
Q 024325          148 YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK  185 (269)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~  185 (269)
                      +......      ...+...|+.....+|++++|+|+.
T Consensus        79 lv~ga~~------~~glg~~fL~~ir~aD~ii~Vvd~~  110 (318)
T cd01899          79 LVPGAHE------GKGLGNKFLDDLRDADALIHVVDAS  110 (318)
T ss_pred             CCCCccc------hhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            8543221      1234456666666699999999986

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.73  E-value=6.5e-17  Score=124.38  Aligned_cols=146  Identities=21%  Similarity=0.145  Sum_probs=91.3

Q ss_pred             EEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee--EEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhc
Q 024325           97 FAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST  171 (269)
Q Consensus        97 ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~--~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~  171 (269)
                      ++|++|+|||||+|++++.. .. ......+..+..  ...   .+..+.+|||||....          ....   ...
T Consensus         1 iiG~~~~GKStl~~~l~~~~-~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~----------~~~~---~~~   65 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGE-FV-PEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERF----------RSLR---RLY   65 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCC-cC-CcccccchhheeeEEEEECCEEEEEEEEecCChHHH----------HhHH---HHH
Confidence            57999999999999999873 21 112111222221  111   2567899999997431          1111   222


Q ss_pred             ccccceEEEEEeCCCCCCcchHH-----HHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEee
Q 024325          172 RVSLKRVCLLIDTKWGVKPRDHE-----LISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS  246 (269)
Q Consensus       172 ~~~~d~vl~vid~~~~~~~~~~~-----~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vS  246 (269)
                      ...+|++++|+|+..+....+..     ........+.|+++|+||+|+.......... ... ...  .....+++++|
T Consensus        66 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~-~~~-~~~--~~~~~~~~~~s  141 (157)
T cd00882          66 YRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEE-LAE-QLA--KELGVPYFETS  141 (157)
T ss_pred             hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHH-HHH-HHH--hhcCCcEEEEe
Confidence            34489999999998643333222     1122334578999999999998765433221 011 111  12357899999


Q ss_pred             CCCCCCHHHHHHHHH
Q 024325          247 SKSGAGIRSLRTVLS  261 (269)
Q Consensus       247 a~~g~gi~~L~~~i~  261 (269)
                      ++++.|+++++++|.
T Consensus       142 ~~~~~~i~~~~~~l~  156 (157)
T cd00882         142 AKTGENVEELFEELA  156 (157)
T ss_pred             cCCCCChHHHHHHHh
Confidence            999999999999985

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.73  E-value=2.5e-16  Score=123.40  Aligned_cols=153  Identities=17%  Similarity=0.177  Sum_probs=105.5

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCc-eeEeeE---E--EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL-TQTINF---F--KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gt-t~~~~~---~--~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      .+|+++|..++||||||++++..   .+..++..| .-|...   +  .....+.+|||+|.          +++..++.
T Consensus        23 ~KlVflGdqsVGKTslItRf~yd---~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQ----------ERFrslip   89 (221)
T KOG0094|consen   23 YKLVFLGDQSVGKTSLITRFMYD---KFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ----------ERFRSLIP   89 (221)
T ss_pred             EEEEEEccCccchHHHHHHHHHh---hhcccccceeeeEEEEEEEEEcCcEEEEEEEecccH----------HHHhhhhh
Confidence            68999999999999999999876   233443322 233321   1  12456889999995          67788888


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcc-hHHHHHHHHhh----CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCC
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMERS----QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP  241 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~-~~~~~~~l~~~----~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (269)
                      .|++.   +.++++|.|..+.-+.. ...+++.+...    ++-+++|.||.||.+..+.......  ....+   .+..
T Consensus        90 sY~Rd---s~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~--~kAke---l~a~  161 (221)
T KOG0094|consen   90 SYIRD---SSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGE--RKAKE---LNAE  161 (221)
T ss_pred             hhccC---CeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHH--HHHHH---hCcE
Confidence            88877   89999999987533322 23455444332    2457789999999987655433322  11122   2457


Q ss_pred             eEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325          242 VMMVSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       242 vi~vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      ++.+||+.|+|+.+||..|...+..
T Consensus       162 f~etsak~g~NVk~lFrrIaa~l~~  186 (221)
T KOG0094|consen  162 FIETSAKAGENVKQLFRRIAAALPG  186 (221)
T ss_pred             EEEecccCCCCHHHHHHHHHHhccC
Confidence            8999999999999999998776543

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.72  E-value=1.4e-16  Score=125.12  Aligned_cols=153  Identities=19%  Similarity=0.174  Sum_probs=103.0

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCce--eEee-----EEEeCCcEEEEcCCCCCCcchhHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT--QTIN-----FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL  164 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt--~~~~-----~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~  164 (269)
                      .++|+++|.+|+|||.|+.++.+..   ++..+. .|  .|+.     ......++.+|||+|.          +++..+
T Consensus         9 lFKiiliGds~VGKtCL~~Rf~~~~---f~e~~~-sTIGVDf~~rt~e~~gk~iKlQIWDTAGQ----------ERFrti   74 (205)
T KOG0084|consen    9 LFKIILIGDSGVGKTCLLLRFKDDT---FTESYI-STIGVDFKIRTVELDGKTIKLQIWDTAGQ----------ERFRTI   74 (205)
T ss_pred             EEEEEEECCCCcChhhhhhhhccCC---cchhhc-ceeeeEEEEEEeeecceEEEEEeeecccc----------HHHhhh
Confidence            4799999999999999999999862   222221 22  2222     2222457999999996          456677


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCC
Q 024325          165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ  240 (269)
Q Consensus       165 ~~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  240 (269)
                      ...|++.   ++.|++|.|.....+... .+++..+..   .++|.++|.||+|+.+.........  +.....   ...
T Consensus        75 t~syYR~---ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a--~~fa~~---~~~  146 (205)
T KOG0084|consen   75 TSSYYRG---AHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEA--QEFADE---LGI  146 (205)
T ss_pred             hHhhccC---CCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHH--HHHHHh---cCC
Confidence            7777776   999999999875322221 244444544   3579999999999986543322111  111111   245


Q ss_pred             C-eEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325          241 P-VMMVSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       241 ~-vi~vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      | ++++|||.+.|+++.|..|...+..
T Consensus       147 ~~f~ETSAK~~~NVe~~F~~la~~lk~  173 (205)
T KOG0084|consen  147 PIFLETSAKDSTNVEDAFLTLAKELKQ  173 (205)
T ss_pred             cceeecccCCccCHHHHHHHHHHHHHH
Confidence            5 9999999999999999888766543

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.72  E-value=1.5e-16  Score=131.64  Aligned_cols=109  Identities=18%  Similarity=0.214  Sum_probs=75.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCC---------------CceeEe-----eEEEe--------CCcEEEEcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP---------------GLTQTI-----NFFKL--------GTKLCLVDL  145 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~---------------gtt~~~-----~~~~~--------~~~~~lvDt  145 (269)
                      +|+++|+.++|||||+.+|+.... .......               |.|-+.     .+...        +..+.+|||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g-~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT   80 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAG-IISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS   80 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcC-CCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence            699999999999999999986522 1111111               122111     12111        456889999


Q ss_pred             CCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCC
Q 024325          146 PGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  216 (269)
Q Consensus       146 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~  216 (269)
                      ||+..-             ..........+|++++|+|+..+...+...++..+...++|+++|+||+|+.
T Consensus        81 PG~~~f-------------~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~  138 (222)
T cd01885          81 PGHVDF-------------SSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL  138 (222)
T ss_pred             CCcccc-------------HHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence            998431             1122222334999999999998888877788887777789999999999986

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.72  E-value=8.1e-17  Score=142.16  Aligned_cols=180  Identities=19%  Similarity=0.171  Sum_probs=124.8

Q ss_pred             hhhccCCCC--CCCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCC---cEEEEcCCCCCCcchh
Q 024325           80 AAKVSSSFP--APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGT---KLCLVDLPGYGFAYAK  154 (269)
Q Consensus        80 ~~~~~~~~~--~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~---~~~lvDtpG~~~~~~~  154 (269)
                      -.++.+.+|  ..+.+.++++|+||+|||||+|.++...  ..+.++++||......+.++   .+.++||||+-+....
T Consensus       154 Vrqhl~rlPsIDp~trTlllcG~PNVGKSSf~~~vtrad--vevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plE  231 (620)
T KOG1490|consen  154 VRQHLSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRAD--DEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEE  231 (620)
T ss_pred             HHHHHhcCCCCCCCcCeEEEecCCCCCcHhhcccccccc--cccCCcccccchhhhhhhhhheeeeeecCCccccCcchh
Confidence            334566676  5778899999999999999999998874  67899999999875444333   4789999999764222


Q ss_pred             HHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcch---HHHHHHHHh--hCCcEEEEEecCCCCCchHHHHHHHHHH
Q 024325          155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD---HELISLMER--SQTKYQVVLTKTDTVFPIDVARRAMQIE  229 (269)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~---~~~~~~l~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~  229 (269)
                      +  ....+...-..+.++.  .+|+|++|-+......-   ..++..+..  .++|+|+|+||+|+..++++....+.+.
T Consensus       232 d--rN~IEmqsITALAHLr--aaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll  307 (620)
T KOG1490|consen  232 D--RNIIEMQIITALAHLR--SAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELL  307 (620)
T ss_pred             h--hhHHHHHHHHHHHHhh--hhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHH
Confidence            1  1111111112223322  35889999885433322   344444444  3789999999999999888776665555


Q ss_pred             HHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhhhh
Q 024325          230 ESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFA  267 (269)
Q Consensus       230 ~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~~~  267 (269)
                      +.+...  ...+++.+|+.+.+|+-++....++.+-.+
T Consensus       308 ~~~~~~--~~v~v~~tS~~~eegVm~Vrt~ACe~LLa~  343 (620)
T KOG1490|consen  308 QTIIDD--GNVKVVQTSCVQEEGVMDVRTTACEALLAA  343 (620)
T ss_pred             HHHHhc--cCceEEEecccchhceeeHHHHHHHHHHHH
Confidence            555442  247899999999999999988887766444

>cd01882 BMS1 Bms1

Probab=99.72  E-value=5.7e-16  Score=128.93  Aligned_cols=143  Identities=17%  Similarity=0.223  Sum_probs=98.5

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~  169 (269)
                      .....|+++|.+|+|||||+|.|++......++...|+.  ......+..+.++||||..            ..+    .
T Consensus        37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~i--~i~~~~~~~i~~vDtPg~~------------~~~----l   98 (225)
T cd01882          37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPI--TVVTGKKRRLTFIECPNDI------------NAM----I   98 (225)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccccE--EEEecCCceEEEEeCCchH------------HHH----H
Confidence            345679999999999999999998863223334444432  1122346779999999841            111    1


Q ss_pred             hcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEE-EEEecCCCCCch-HHHHHHHHHHHHHHhcCCCCCCeEEeeC
Q 024325          170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ-VVLTKTDTVFPI-DVARRAMQIEESLKANNSLVQPVMMVSS  247 (269)
Q Consensus       170 ~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~i-iv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~vi~vSa  247 (269)
                      .....+|++++|+|+..++...+..++..+...+.|.+ +|+||+|+..+. ...+....+++.+........+++++||
T Consensus        99 ~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa  178 (225)
T cd01882          99 DIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSG  178 (225)
T ss_pred             HHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEee
Confidence            12234999999999998888888888888888888854 599999998543 2444455555544322223579999999


Q ss_pred             CCC
Q 024325          248 KSG  250 (269)
Q Consensus       248 ~~g  250 (269)
                      ++.
T Consensus       179 ~~~  181 (225)
T cd01882         179 IVH  181 (225)
T ss_pred             ccC
Confidence            987

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.72  E-value=1e-15  Score=128.82  Aligned_cols=128  Identities=22%  Similarity=0.172  Sum_probs=87.9

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      ..++|+++|.+|+|||||+|+|++. ....++..+++|.......   .+..+.+|||||+.+........+.....+..
T Consensus        30 ~~~~IllvG~tGvGKSSliNaLlg~-~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~  108 (249)
T cd01853          30 FSLTILVLGKTGVGKSSTINSIFGE-RKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKR  108 (249)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhCC-CCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHHH
Confidence            4579999999999999999999998 5667788877777765433   36789999999998763211111111222333


Q ss_pred             HHhcccccceEEEEEeCCC-CCCcchHHHHHHHHh-hC----CcEEEEEecCCCCCchH
Q 024325          168 YVSTRVSLKRVCLLIDTKW-GVKPRDHELISLMER-SQ----TKYQVVLTKTDTVFPID  220 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~-~~~~~~~~~~~~l~~-~~----~p~iiv~NK~Dl~~~~~  220 (269)
                      |+.. ...+++++|...+. .....+..+++.+.. .+    .++++|+||+|...+..
T Consensus       109 ~l~~-~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~  166 (249)
T cd01853         109 YLKK-KTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDG  166 (249)
T ss_pred             HHhc-cCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCCC
Confidence            4432 23788888865542 445566677777765 22    47999999999986543

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=99.71  E-value=1.4e-16  Score=123.65  Aligned_cols=157  Identities=16%  Similarity=0.150  Sum_probs=103.3

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHhcCcCccc----cCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHH
Q 024325           89 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVR----TSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL  164 (269)
Q Consensus        89 ~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~----~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~  164 (269)
                      +....+|.++|.+|+|||||+|.+.... ...    +-...+.|+++.....-..+.+|||+|.          +++..+
T Consensus         6 K~~lLKViiLGDsGVGKtSLmn~yv~~k-F~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQ----------ERFqsL   74 (210)
T KOG0394|consen    6 KRTLLKVIILGDSGVGKTSLMNQYVNKK-FSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQ----------ERFQSL   74 (210)
T ss_pred             cccceEEEEeCCCCccHHHHHHHHHHHH-HHHHhccccchhheeeEEEEcCeEEEEEEEecccH----------HHhhhc
Confidence            3556799999999999999999998762 211    1112335666665544456889999995          445555


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCC--cchHHHHHHHHhh------CCcEEEEEecCCCCCchH---HHHHHHHHHHHHH
Q 024325          165 VKEYVSTRVSLKRVCLLIDTKWGVK--PRDHELISLMERS------QTKYQVVLTKTDTVFPID---VARRAMQIEESLK  233 (269)
Q Consensus       165 ~~~~~~~~~~~d~vl~vid~~~~~~--~~~~~~~~~l~~~------~~p~iiv~NK~Dl~~~~~---~~~~~~~~~~~~~  233 (269)
                      .-.|++.   +|.++++.|....-.  ..+..--+++.+.      ..|++++.||+|+.....   -.+..+..   ..
T Consensus        75 g~aFYRg---aDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~W---C~  148 (210)
T KOG0394|consen   75 GVAFYRG---ADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTW---CK  148 (210)
T ss_pred             ccceecC---CceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHH---HH
Confidence            5555555   999999988764322  2222222333332      368999999999975321   11111111   11


Q ss_pred             hcCCCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325          234 ANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       234 ~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      .  ...+|++++|||.+.|+++.|..+.+.+
T Consensus       149 s--~gnipyfEtSAK~~~NV~~AFe~ia~~a  177 (210)
T KOG0394|consen  149 S--KGNIPYFETSAKEATNVDEAFEEIARRA  177 (210)
T ss_pred             h--cCCceeEEecccccccHHHHHHHHHHHH
Confidence            1  2368999999999999999999887654

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.71  E-value=2.6e-16  Score=128.18  Aligned_cols=153  Identities=12%  Similarity=-0.043  Sum_probs=91.7

Q ss_pred             cEEEEEcCCCCChHHHHH-HHhcCcC--ccccCCCCCcee--E-ee------------EEEeCCcEEEEcCCCCCCcchh
Q 024325           93 PEIAFAGRSNVGKSSMLN-ALTRQWG--VVRTSDKPGLTQ--T-IN------------FFKLGTKLCLVDLPGYGFAYAK  154 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin-~l~~~~~--~~~~s~~~gtt~--~-~~------------~~~~~~~~~lvDtpG~~~~~~~  154 (269)
                      .+|+++|.+|+|||||+. ++.+...  ..+...+.+|..  + ..            .......+.+|||||....   
T Consensus         3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~---   79 (195)
T cd01873           3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK---   79 (195)
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh---
Confidence            589999999999999996 5554310  012233333331  1 10            0111346889999997321   


Q ss_pred             HHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchH--HHHHHHHh--hCCcEEEEEecCCCCCchH----------
Q 024325          155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMER--SQTKYQVVLTKTDTVFPID----------  220 (269)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~--~~~~~l~~--~~~p~iiv~NK~Dl~~~~~----------  220 (269)
                               +...   ....+|++++|+|..+..+....  .++..+..  .+.|+++|.||+|+.....          
T Consensus        80 ---------~~~~---~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~  147 (195)
T cd01873          80 ---------DRRF---AYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPL  147 (195)
T ss_pred             ---------hhcc---cCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhccccc
Confidence                     1111   23459999999998754333322  24454543  3579999999999864200          


Q ss_pred             -------HHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHh
Q 024325          221 -------VARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI  263 (269)
Q Consensus       221 -------~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~  263 (269)
                             ..-.....++....   .+.+++++||++|.|++++|+.+.+.
T Consensus       148 ~~~~~~~~~V~~~e~~~~a~~---~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         148 ARPIKNADILPPETGRAVAKE---LGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             ccccccCCccCHHHHHHHHHH---hCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence                   00001111121121   24689999999999999999988764

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04129 Rho2 Rho2 subfamily

Probab=99.71  E-value=2.1e-16  Score=127.94  Aligned_cols=154  Identities=16%  Similarity=0.048  Sum_probs=90.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeE-ee----EEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-IN----FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~-~~----~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      +|+++|++|+|||||++++.....   ......++.+ ..    .......+.+|||||....          ..+...+
T Consensus         3 Ki~ivG~~g~GKStLl~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~----------~~~~~~~   69 (187)
T cd04129           3 KLVIVGDGACGKTSLLSVFTLGEF---PEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEY----------ERLRPLS   69 (187)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCC---CcccCCcccceEEEEEEECCEEEEEEEEECCCChhc----------cccchhh
Confidence            799999999999999999985421   1121122222 11    1111245789999996321          1111111


Q ss_pred             HhcccccceEEEEEeCCCCCCcch--HHHHHHHHhh--CCcEEEEEecCCCCCchHHH------HH--HHHHHHHHHhcC
Q 024325          169 VSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPIDVA------RR--AMQIEESLKANN  236 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~~~~~~~--~~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~------~~--~~~~~~~~~~~~  236 (269)
                         ...++++++++|.........  ..++..+...  ..|+++|.||+|+.......      ..  ........... 
T Consensus        70 ---~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  145 (187)
T cd04129          70 ---YSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEI-  145 (187)
T ss_pred             ---cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHh-
Confidence               234899999998764322222  2344444432  68999999999985421000      00  01111111111 


Q ss_pred             CCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          237 SLVQPVMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       237 ~~~~~vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                       ...+++++||++|.|++++++++.+.+.
T Consensus       146 -~~~~~~e~Sa~~~~~v~~~f~~l~~~~~  173 (187)
T cd04129         146 -GAKKYMECSALTGEGVDDVFEAATRAAL  173 (187)
T ss_pred             -CCcEEEEccCCCCCCHHHHHHHHHHHHh
Confidence             1247899999999999999999987654

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>PRK00007 elongation factor G; Reviewed

Probab=99.71  E-value=3e-16  Score=150.13  Aligned_cols=115  Identities=17%  Similarity=0.209  Sum_probs=86.9

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcC----ccccC------------CCCCceeEee---EEEeCCcEEEEcCCCCCCc
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWG----VVRTS------------DKPGLTQTIN---FFKLGTKLCLVDLPGYGFA  151 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~----~~~~s------------~~~gtt~~~~---~~~~~~~~~lvDtpG~~~~  151 (269)
                      ...+|+++|++|+|||||+|+|+....    ...++            ...|+|.+..   +...+..+.++||||+.+ 
T Consensus         9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~-   87 (693)
T PRK00007          9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD-   87 (693)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH-
Confidence            456999999999999999999974211    11122            2456776643   334477899999999721 


Q ss_pred             chhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCc
Q 024325          152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP  218 (269)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~  218 (269)
                                  +.......+..+|++++|+|+..+...++..++..+...++|+++++||+|+...
T Consensus        88 ------------f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~  142 (693)
T PRK00007         88 ------------FTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGA  142 (693)
T ss_pred             ------------HHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCC
Confidence                        2223444455599999999999999999999999999999999999999999853

>cd04167 Snu114p Snu114p subfamily

Probab=99.71  E-value=2.7e-16  Score=129.95  Aligned_cols=157  Identities=20%  Similarity=0.192  Sum_probs=96.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCcccc---C---------------CCCCceeEee---EEE-----eCCcEEEEcCCC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRT---S---------------DKPGLTQTIN---FFK-----LGTKLCLVDLPG  147 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~---s---------------~~~gtt~~~~---~~~-----~~~~~~lvDtpG  147 (269)
                      +|+++|++|+|||||+++|+.... ...   .               ...|+|-+..   +..     ....+.+|||||
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~-~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG   80 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTH-DLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG   80 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcC-CCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence            589999999999999999987521 110   0               0112222111   111     125689999999


Q ss_pred             CCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCC------c-hH
Q 024325          148 YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF------P-ID  220 (269)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~------~-~~  220 (269)
                      ..+.          ......+   ...+|++++|+|+..+.......++..+...+.|+++|+||+|+..      + ..
T Consensus        81 ~~~f----------~~~~~~~---~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~l~~~~~  147 (213)
T cd04167          81 HVNF----------MDEVAAA---LRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLILELKLPPNDA  147 (213)
T ss_pred             Ccch----------HHHHHHH---HHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCcccccCCHHHH
Confidence            7432          1111122   2239999999999877666555666666666799999999999862      1 11


Q ss_pred             ---HHHHHHHHHHHHHhcCC--------CCCCeEEeeCCCCCCHH--------HHHHHHHHhh
Q 024325          221 ---VARRAMQIEESLKANNS--------LVQPVMMVSSKSGAGIR--------SLRTVLSKIA  264 (269)
Q Consensus       221 ---~~~~~~~~~~~~~~~~~--------~~~~vi~vSa~~g~gi~--------~L~~~i~~~~  264 (269)
                         +.+..+.+...+.....        ...++++.|++.++++.        +|++.|.+.+
T Consensus       148 ~~~l~~~i~~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~~  210 (213)
T cd04167         148 YFKLRHIIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNI  210 (213)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEecHHHHhhhhHHHHHHhhC
Confidence               22223334433333211        12338899999999887        6777666543

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.71  E-value=3.8e-16  Score=129.40  Aligned_cols=153  Identities=15%  Similarity=0.115  Sum_probs=91.9

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeE-e----eEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-I----NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~-~----~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      .+|+++|.+|+|||||++++.+..   +...+.+|..+ .    ........+.+|||+|...          +..+...
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~---f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~----------~~~l~~~   68 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDA---YPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSY----------YDNVRPL   68 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC---CCCccCCccccceEEEEEECCEEEEEEEEeCCCcHH----------HHHHhHH
Confidence            379999999999999999999862   23333333221 1    1111234588999999621          2223233


Q ss_pred             HHhcccccceEEEEEeCCCCCCcch--HHHHHHHHh--hCCcEEEEEecCCCCCchHHHHH---------H-HHHHHHHH
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFPIDVARR---------A-MQIEESLK  233 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~--~~~~~~l~~--~~~p~iiv~NK~Dl~~~~~~~~~---------~-~~~~~~~~  233 (269)
                      ++   ..+|++++|+|.+...+...  ..+...+..  .+.|+++|.||+|+.........         . +.......
T Consensus        69 ~~---~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak  145 (222)
T cd04173          69 AY---PDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAK  145 (222)
T ss_pred             hc---cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHH
Confidence            33   34999999999875422221  122222222  35899999999999653211100         0 01111111


Q ss_pred             hcCCCC-CCeEEeeCCCCCC-HHHHHHHHHHhh
Q 024325          234 ANNSLV-QPVMMVSSKSGAG-IRSLRTVLSKIA  264 (269)
Q Consensus       234 ~~~~~~-~~vi~vSa~~g~g-i~~L~~~i~~~~  264 (269)
                      .   .+ .+++++||++++| ++++|.......
T Consensus       146 ~---~~~~~y~E~SAk~~~~~V~~~F~~~~~~~  175 (222)
T cd04173         146 Q---VGAVSYVECSSRSSERSVRDVFHVATVAS  175 (222)
T ss_pred             H---cCCCEEEEcCCCcCCcCHHHHHHHHHHHH
Confidence            1   13 4899999999985 999998877643

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>PRK12739 elongation factor G; Reviewed

Probab=99.71  E-value=3.2e-16  Score=150.01  Aligned_cols=115  Identities=18%  Similarity=0.244  Sum_probs=86.1

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcC----ccccC------------CCCCceeEee---EEEeCCcEEEEcCCCCCCc
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWG----VVRTS------------DKPGLTQTIN---FFKLGTKLCLVDLPGYGFA  151 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~----~~~~s------------~~~gtt~~~~---~~~~~~~~~lvDtpG~~~~  151 (269)
                      ...+|+++|++|+|||||+|+|+....    ...+.            ...|+|.+..   +...+..+.++||||+.+ 
T Consensus         7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~-   85 (691)
T PRK12739          7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD-   85 (691)
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH-
Confidence            456899999999999999999975311    11122            1456666643   334577899999999721 


Q ss_pred             chhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCc
Q 024325          152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP  218 (269)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~  218 (269)
                                  +.......+..+|++++|+|+..+...++..++..+...++|+++++||+|+...
T Consensus        86 ------------f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~  140 (691)
T PRK12739         86 ------------FTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGA  140 (691)
T ss_pred             ------------HHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCC
Confidence                        2223344444599999999999998888889999998889999999999999854

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.70  E-value=3.3e-16  Score=139.95  Aligned_cols=85  Identities=22%  Similarity=0.213  Sum_probs=64.1

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE---------------------------eCCcEEEEcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---------------------------LGTKLCLVDL  145 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~---------------------------~~~~~~lvDt  145 (269)
                      ++|+++|.||+|||||+|+|++..  ..++++|++|.+.+...                           ....+.++||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~--~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~   79 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLAD--VEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDV   79 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCc--ccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEc
Confidence            479999999999999999999983  56789999998765421                           1134789999


Q ss_pred             CCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCC
Q 024325          146 PGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK  185 (269)
Q Consensus       146 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~  185 (269)
                      ||+.......      ..+...|+.....+|++++|+|+.
T Consensus        80 aGl~~ga~~g------~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         80 AGLVPGAHEG------RGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             CCcCCCccch------hhHHHHHHHHHHHCCEEEEEEeCC
Confidence            9986542211      234456666666799999999996

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.70  E-value=2.2e-16  Score=140.83  Aligned_cols=164  Identities=21%  Similarity=0.215  Sum_probs=117.9

Q ss_pred             CCCCCCCcEEEEEcCCCCChHHHHHHHhcCcCc-------------cccCCCCCceeEe---eEEEeC---CcEEEEcCC
Q 024325           86 SFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGV-------------VRTSDKPGLTQTI---NFFKLG---TKLCLVDLP  146 (269)
Q Consensus        86 ~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~-------------~~~s~~~gtt~~~---~~~~~~---~~~~lvDtp  146 (269)
                      ..|..+..+++|+-+...|||||..+|+.....             ..+....|.|-..   ..++.+   +.+++||||
T Consensus        54 ~~P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTP  133 (650)
T KOG0462|consen   54 LDPVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTP  133 (650)
T ss_pred             cCchhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCC
Confidence            344456678999999999999999998754210             1122345556443   233334   779999999


Q ss_pred             CCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHH
Q 024325          147 GYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAM  226 (269)
Q Consensus       147 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~  226 (269)
                      |+.+-             ..+..+.+..|+.+++|+|++++.+.+....+...-+.+..+|.|+||+|+..+ +.+....
T Consensus       134 GHvDF-------------s~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~a-dpe~V~~  199 (650)
T KOG0462|consen  134 GHVDF-------------SGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSA-DPERVEN  199 (650)
T ss_pred             Ccccc-------------cceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCC-CHHHHHH
Confidence            98542             112222333499999999999999988877666666778999999999999865 3455555


Q ss_pred             HHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325          227 QIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       227 ~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      .+.+.+..   ...+++.+|||+|.|++++++.|.+.+..
T Consensus       200 q~~~lF~~---~~~~~i~vSAK~G~~v~~lL~AII~rVPp  236 (650)
T KOG0462|consen  200 QLFELFDI---PPAEVIYVSAKTGLNVEELLEAIIRRVPP  236 (650)
T ss_pred             HHHHHhcC---CccceEEEEeccCccHHHHHHHHHhhCCC
Confidence            55554432   24689999999999999999999998753

>cd01850 CDC_Septin CDC/Septin

Probab=99.69  E-value=1.6e-15  Score=129.74  Aligned_cols=150  Identities=20%  Similarity=0.358  Sum_probs=95.5

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCC--------CCCcee-Eee---EEEeC--CcEEEEcCCCCCCcchhHH--
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSD--------KPGLTQ-TIN---FFKLG--TKLCLVDLPGYGFAYAKEE--  156 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~--------~~gtt~-~~~---~~~~~--~~~~lvDtpG~~~~~~~~~--  156 (269)
                      ++|+++|.+|+|||||+|+|++. .....+.        ...|+. ...   ....+  ..+.+|||||+++......  
T Consensus         5 f~I~vvG~sg~GKSTliN~L~~~-~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~   83 (276)
T cd01850           5 FNIMVVGESGLGKSTFINTLFNT-KLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW   83 (276)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHcC-CCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence            68999999999999999999988 3333321        222321 111   11113  3689999999987643221  


Q ss_pred             --HHHHHHHHHHHHHh---------c--ccccceEEEEEeCC-CCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHH
Q 024325          157 --VKDAWEELVKEYVS---------T--RVSLKRVCLLIDTK-WGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVA  222 (269)
Q Consensus       157 --~~~~~~~~~~~~~~---------~--~~~~d~vl~vid~~-~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~  222 (269)
                        +......-...|+.         .  -..+|+++|++++. .++...+.++++.+.. .+|+++|+||+|++...+..
T Consensus        84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~v~vi~VinK~D~l~~~e~~  162 (276)
T cd01850          84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-RVNIIPVIAKADTLTPEELK  162 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-cCCEEEEEECCCcCCHHHHH
Confidence              11111111111111         1  11378899999876 4677778888998875 79999999999999877776


Q ss_pred             HHHHHHHHHHHhcCCCCCCeEEeeC
Q 024325          223 RRAMQIEESLKANNSLVQPVMMVSS  247 (269)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~vi~vSa  247 (269)
                      ...+.+.+.+...   +.+++..+.
T Consensus       163 ~~k~~i~~~l~~~---~i~~~~~~~  184 (276)
T cd01850         163 EFKQRIMEDIEEH---NIKIYKFPE  184 (276)
T ss_pred             HHHHHHHHHHHHc---CCceECCCC
Confidence            6666666666543   345555443

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.69  E-value=4.8e-16  Score=148.78  Aligned_cols=115  Identities=19%  Similarity=0.229  Sum_probs=83.9

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCc----cccCC------------CCCceeEee---EEEeCCcEEEEcCCCCCCc
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGV----VRTSD------------KPGLTQTIN---FFKLGTKLCLVDLPGYGFA  151 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~----~~~s~------------~~gtt~~~~---~~~~~~~~~lvDtpG~~~~  151 (269)
                      ...+|+++|++|+|||||+|+|+.....    ..+.+            ..|+|.+..   +.+.+..+.+|||||+.+.
T Consensus         9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~   88 (689)
T TIGR00484         9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDF   88 (689)
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcch
Confidence            4569999999999999999999753211    11111            345666543   3344778999999998532


Q ss_pred             chhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCc
Q 024325          152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP  218 (269)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~  218 (269)
                      .             .........+|++++|+|+..+...++..++..+...++|+++|+||+|+...
T Consensus        89 ~-------------~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~  142 (689)
T TIGR00484        89 T-------------VEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGA  142 (689)
T ss_pred             h-------------HHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCC
Confidence            1             11122233389999999999888888888888888889999999999999854

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.69  E-value=8.4e-16  Score=126.00  Aligned_cols=154  Identities=19%  Similarity=0.249  Sum_probs=90.4

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE-----eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~-----~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      |.|+++|++|||||||+++|.+..   .....+.++.......     .+..+.+|||||...          +......
T Consensus         1 ~~vll~G~~~sGKTsL~~~l~~~~---~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~----------~~~~~~~   67 (203)
T cd04105           1 PTVLLLGPSDSGKTALFTKLTTGK---YRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPK----------LRDKLLE   67 (203)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCC---CCCccCcEeecceEEEeecCCCCceEEEEECCCCHH----------HHHHHHH
Confidence            579999999999999999999862   2222333333322222     256799999999732          1122222


Q ss_pred             HHhccccc-ceEEEEEeCCCCCCcch---HHHHHHHH---h--hCCcEEEEEecCCCCCchHHHHHHHHHHHHHH-----
Q 024325          168 YVSTRVSL-KRVCLLIDTKWGVKPRD---HELISLME---R--SQTKYQVVLTKTDTVFPIDVARRAMQIEESLK-----  233 (269)
Q Consensus       168 ~~~~~~~~-d~vl~vid~~~~~~~~~---~~~~~~l~---~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~-----  233 (269)
                      ++.   .+ +++++|+|+........   ..+...+.   .  .++|+++|+||+|+..........+.+...+.     
T Consensus        68 ~~~---~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~  144 (203)
T cd04105          68 TLK---NSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRES  144 (203)
T ss_pred             HHh---ccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHH
Confidence            222   25 99999999985321111   12222221   1  37899999999999864333222222221110     


Q ss_pred             --h-c-----------------------C--CCCCCeEEeeCCCCC-CHHHHHHHHHH
Q 024325          234 --A-N-----------------------N--SLVQPVMMVSSKSGA-GIRSLRTVLSK  262 (269)
Q Consensus       234 --~-~-----------------------~--~~~~~vi~vSa~~g~-gi~~L~~~i~~  262 (269)
                        . .                       .  .....++..|++.+. |++.+.+||.+
T Consensus       145 r~~~l~~~~~~~~~~~~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~  202 (203)
T cd04105         145 RSKSLSSLDGDEGSKESLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE  202 (203)
T ss_pred             HhccccccccccccccccccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence              0 0                       0  002235777888776 69999999865

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.69  E-value=1.4e-15  Score=121.04  Aligned_cols=154  Identities=18%  Similarity=0.133  Sum_probs=106.2

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE-------eCCcEEEEcCCCCCCcchhHHHHHHHH
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-------LGTKLCLVDLPGYGFAYAKEEVKDAWE  162 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~-------~~~~~~lvDtpG~~~~~~~~~~~~~~~  162 (269)
                      ...++|+++|.+|+|||+++-++...   ++...+. .|-.+.|..       ....+.+|||+|.          +++.
T Consensus        10 d~~~kvlliGDs~vGKt~~l~rf~d~---~f~~~~~-sTiGIDFk~kti~l~g~~i~lQiWDtaGQ----------erf~   75 (207)
T KOG0078|consen   10 DYLFKLLLIGDSGVGKTCLLLRFSDD---SFNTSFI-STIGIDFKIKTIELDGKKIKLQIWDTAGQ----------ERFR   75 (207)
T ss_pred             ceEEEEEEECCCCCchhHhhhhhhhc---cCcCCcc-ceEEEEEEEEEEEeCCeEEEEEEEEcccc----------hhHH
Confidence            34679999999999999999999987   2222222 232222221       1345889999996          4556


Q ss_pred             HHHHHHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHhh---CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCC
Q 024325          163 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSL  238 (269)
Q Consensus       163 ~~~~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~~---~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  238 (269)
                      .+...|++.   ++.+++|+|.....+... ..+++.+.++   ++|.++|.||+|+.....+....  -+....+   .
T Consensus        76 ti~~sYyrg---A~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~--ge~lA~e---~  147 (207)
T KOG0078|consen   76 TITTAYYRG---AMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKER--GEALARE---Y  147 (207)
T ss_pred             HHHHHHHhh---cCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHH--HHHHHHH---h
Confidence            777788777   999999999875433332 3466666654   68999999999998643322211  1111122   2


Q ss_pred             CCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          239 VQPVMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       239 ~~~vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      +.+.+++||++|.||++.|..|.+.+.
T Consensus       148 G~~F~EtSAk~~~NI~eaF~~La~~i~  174 (207)
T KOG0078|consen  148 GIKFFETSAKTNFNIEEAFLSLARDIL  174 (207)
T ss_pred             CCeEEEccccCCCCHHHHHHHHHHHHH
Confidence            678999999999999999988877654

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.67  E-value=5.8e-16  Score=132.37  Aligned_cols=146  Identities=21%  Similarity=0.331  Sum_probs=90.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCc-cccCC-CCCc--------------eeEe---eEEEeCCcEEEEcCCCCCCcchh
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGV-VRTSD-KPGL--------------TQTI---NFFKLGTKLCLVDLPGYGFAYAK  154 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~-~~~s~-~~gt--------------t~~~---~~~~~~~~~~lvDtpG~~~~~~~  154 (269)
                      +|+++|++|+|||||+|+|+..... ...+. ..|+              |...   .+...+..+.+|||||..+    
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~----   76 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYAD----   76 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHH----
Confidence            4899999999999999999864211 00100 0111              1111   2223467899999999732    


Q ss_pred             HHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHh
Q 024325          155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA  234 (269)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~  234 (269)
                               +.......+..+|.+++|+|+..+.......++..+...++|+++|+||+|+... +.......+++.+. 
T Consensus        77 ---------f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~-~~~~~~~~l~~~~~-  145 (268)
T cd04170          77 ---------FVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERA-DFDKTLAALQEAFG-  145 (268)
T ss_pred             ---------HHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCC-CHHHHHHHHHHHhC-
Confidence                     1111112223499999999999877776677778888889999999999999865 34444455554432 


Q ss_pred             cCCCCCCeE--EeeCCCCCCHHHHHHH
Q 024325          235 NNSLVQPVM--MVSSKSGAGIRSLRTV  259 (269)
Q Consensus       235 ~~~~~~~vi--~vSa~~g~gi~~L~~~  259 (269)
                           .+++  .++..+|.|+..+.+.
T Consensus       146 -----~~~~~~~ip~~~~~~~~~~vd~  167 (268)
T cd04170         146 -----RPVVPLQLPIGEGDDFKGVVDL  167 (268)
T ss_pred             -----CCeEEEEecccCCCceeEEEEc
Confidence                 2333  3445666655444433

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.67  E-value=6.4e-16  Score=129.89  Aligned_cols=161  Identities=23%  Similarity=0.295  Sum_probs=121.9

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccC-------------------CCCCceeEeeEE------------EeCCc
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTS-------------------DKPGLTQTINFF------------KLGTK  139 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s-------------------~~~gtt~~~~~~------------~~~~~  139 (269)
                      ...+|.++|+...|||||..+|+|-+- ..-|                   .++.+...-.+.            ..-..
T Consensus         9 p~vNIG~vGHVdHGKtTlv~AlsGvwT-~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~   87 (415)
T COG5257           9 PEVNIGMVGHVDHGKTTLTKALSGVWT-DRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR   87 (415)
T ss_pred             cceEeeeeeecccchhhheehhhceee-echhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence            456899999999999999999998631 0000                   001110000000            01134


Q ss_pred             EEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCC-CCcchHHHHHHHHhhC-CcEEEEEecCCCCC
Q 024325          140 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-VKPRDHELISLMERSQ-TKYQVVLTKTDTVF  217 (269)
Q Consensus       140 ~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~-~~~~~~~~~~~l~~~~-~p~iiv~NK~Dl~~  217 (269)
                      +.|+|.||+             +-++..+++.....|..++|+.++.+ .+++..+.+-.+.-.+ +.+++|-||+|+++
T Consensus        88 VSfVDaPGH-------------e~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~  154 (415)
T COG5257          88 VSFVDAPGH-------------ETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVS  154 (415)
T ss_pred             EEEeeCCch-------------HHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceec
Confidence            889999996             56777888888889999999999864 4567777777777666 46999999999999


Q ss_pred             chHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          218 PIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      .+...+..+.++++++-....+.|++|+||..+.|||.|++.|.+.+.
T Consensus       155 ~E~AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ip  202 (415)
T COG5257         155 RERALENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIP  202 (415)
T ss_pred             HHHHHHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCC
Confidence            988888888888888776666789999999999999999999998763

>cd04169 RF3 RF3 subfamily

Probab=99.67  E-value=3e-15  Score=127.47  Aligned_cols=126  Identities=19%  Similarity=0.209  Sum_probs=81.6

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCc-cccCCC------CCceeE----------------eeEEEeCCcEEEEcCCCCC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGV-VRTSDK------PGLTQT----------------INFFKLGTKLCLVDLPGYG  149 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~-~~~s~~------~gtt~~----------------~~~~~~~~~~~lvDtpG~~  149 (269)
                      .+|+++|++|+|||||+++|+..... ...+..      ..++.|                ..+...+..+.+|||||+.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            47999999999999999999854111 111100      111111                1233347789999999973


Q ss_pred             CcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHH
Q 024325          150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE  229 (269)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~  229 (269)
                      +             +.......+..+|.+++|+|+..+.......+++.+...++|+++++||+|+.... .......++
T Consensus        83 d-------------f~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a~-~~~~~~~l~  148 (267)
T cd04169          83 D-------------FSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGRD-PLELLDEIE  148 (267)
T ss_pred             H-------------HHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCCC-HHHHHHHHH
Confidence            2             11111122234999999999988776666677777777789999999999987653 223344555


Q ss_pred             HHH
Q 024325          230 ESL  232 (269)
Q Consensus       230 ~~~  232 (269)
                      +.+
T Consensus       149 ~~l  151 (267)
T cd04169         149 EEL  151 (267)
T ss_pred             HHH
Confidence            443

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PTZ00258 GTP-binding protein; Provisional

Probab=99.66  E-value=1.5e-15  Score=134.41  Aligned_cols=88  Identities=23%  Similarity=0.274  Sum_probs=67.6

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe--------------------CCcEEEEcCCCCC
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--------------------GTKLCLVDLPGYG  149 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~--------------------~~~~~lvDtpG~~  149 (269)
                      ....+|+++|.||+|||||+|+|++. . ..++++|+||.+.+....                    +..+.++||||+.
T Consensus        19 ~~~~kvgIVG~PNvGKSTLfnaLt~~-~-~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv   96 (390)
T PTZ00258         19 GNNLKMGIVGLPNVGKSTTFNALCKQ-Q-VPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV   96 (390)
T ss_pred             CCCcEEEEECCCCCChHHHHHHHhcC-c-ccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence            34568999999999999999999987 3 689999999988654332                    2248999999997


Q ss_pred             CcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCC
Q 024325          150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK  185 (269)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~  185 (269)
                      ......      ..+...++.....+|++++|+|+.
T Consensus        97 ~ga~~g------~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         97 KGASEG------EGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             cCCcch------hHHHHHHHHHHHHCCEEEEEEeCC
Confidence            543221      234456666667799999999985

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.66  E-value=5.9e-15  Score=122.07  Aligned_cols=155  Identities=14%  Similarity=0.016  Sum_probs=91.9

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE---EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~---~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      ...+|+++|++|||||||+++++.........+..+.......+   .....+.+|||+|...          +..+...
T Consensus         8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~----------~~~~~~~   77 (215)
T PTZ00132          8 PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEK----------FGGLRDG   77 (215)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchh----------hhhhhHH
Confidence            45789999999999999997655431111112222222211111   1235688999999622          1222223


Q ss_pred             HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh--hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEE
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM  244 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~  244 (269)
                      +..   .++++++|+|.....+... ..++..+..  .+.|+++|+||+|+...........    ....   ....+++
T Consensus        78 ~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~----~~~~---~~~~~~e  147 (215)
T PTZ00132         78 YYI---KGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQIT----FHRK---KNLQYYD  147 (215)
T ss_pred             Hhc---cCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHH----HHHH---cCCEEEE
Confidence            332   3799999999875332221 122232221  3589999999999864322111111    1111   2457899


Q ss_pred             eeCCCCCCHHHHHHHHHHhhh
Q 024325          245 VSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       245 vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      +||++|.|+++.+.+|.+.+-
T Consensus       148 ~Sa~~~~~v~~~f~~ia~~l~  168 (215)
T PTZ00132        148 ISAKSNYNFEKPFLWLARRLT  168 (215)
T ss_pred             EeCCCCCCHHHHHHHHHHHHh
Confidence            999999999999998877653

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.66  E-value=2.5e-15  Score=118.38  Aligned_cols=151  Identities=18%  Similarity=0.142  Sum_probs=95.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCce-eEee---EEE--eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTIN---FFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt-~~~~---~~~--~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      +|+++|.+++|||||++++.+..   +...+..|. .+..   ...  ....+.+||++|....          ..+...
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~----------~~~~~~   67 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGE---FPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERF----------DSLRDI   67 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS---TTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGG----------HHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHhhc---cccccccccccccccccccccccccccccccccccccc----------cccccc
Confidence            58999999999999999999872   223333332 2221   111  2345899999996321          222233


Q ss_pred             HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHhh---CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeE
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM  243 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~~---~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi  243 (269)
                      ++.   .+|++++++|..+..+... ..++..+...   ..|+++|.||+|+........  +..++.....   ..+++
T Consensus        68 ~~~---~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~--~~~~~~~~~~---~~~~~  139 (162)
T PF00071_consen   68 FYR---NSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSV--EEAQEFAKEL---GVPYF  139 (162)
T ss_dssp             HHT---TESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCH--HHHHHHHHHT---TSEEE
T ss_pred             ccc---ccccccccccccccccccccccccccccccccccccceeeeccccccccccchh--hHHHHHHHHh---CCEEE
Confidence            333   3899999999864211111 2344444332   479999999999886322211  1122222222   47899


Q ss_pred             EeeCCCCCCHHHHHHHHHHhhh
Q 024325          244 MVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       244 ~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      .+||+++.|+.+++..+.+.+.
T Consensus       140 e~Sa~~~~~v~~~f~~~i~~i~  161 (162)
T PF00071_consen  140 EVSAKNGENVKEIFQELIRKIL  161 (162)
T ss_dssp             EEBTTTTTTHHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHHh
Confidence            9999999999999999987764

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.66  E-value=4.8e-15  Score=136.98  Aligned_cols=114  Identities=19%  Similarity=0.253  Sum_probs=77.6

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcC-ccccCCCC-------------------CceeE---eeEEEeCCcEEEEcCCCC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWG-VVRTSDKP-------------------GLTQT---INFFKLGTKLCLVDLPGY  148 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~-~~~~s~~~-------------------gtt~~---~~~~~~~~~~~lvDtpG~  148 (269)
                      ..+|+++|++|+|||||+++|+.... +...+...                   |.|-.   ..+...+..+.+|||||+
T Consensus        10 ~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~   89 (526)
T PRK00741         10 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGH   89 (526)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCc
Confidence            34899999999999999999874211 11111110                   11111   223344678999999997


Q ss_pred             CCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCc
Q 024325          149 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP  218 (269)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~  218 (269)
                      .+-             .......+..+|.+++|+|+..+.......++......++|+++++||+|+...
T Consensus        90 ~df-------------~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a  146 (526)
T PRK00741         90 EDF-------------SEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGR  146 (526)
T ss_pred             hhh-------------HHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCccccc
Confidence            321             111122223499999999999888777778888888889999999999998753

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.65  E-value=5.6e-15  Score=134.31  Aligned_cols=152  Identities=19%  Similarity=0.225  Sum_probs=102.4

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCc-----------------------ccc------CCCCCceeEeeEE---EeCC
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGV-----------------------VRT------SDKPGLTQTINFF---KLGT  138 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~-----------------------~~~------s~~~gtt~~~~~~---~~~~  138 (269)
                      +..+|+++|+.++|||||+-+|+.....                       +.+      ....|.|-+..+.   +.+.
T Consensus         6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~   85 (447)
T PLN00043          6 VHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKY   85 (447)
T ss_pred             ceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCE
Confidence            3468999999999999999888742110                       000      1123455555433   2356


Q ss_pred             cEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCC-C------cchHHHHHHHHhhCCc-EEEEE
Q 024325          139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-K------PRDHELISLMERSQTK-YQVVL  210 (269)
Q Consensus       139 ~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~-~------~~~~~~~~~l~~~~~p-~iiv~  210 (269)
                      .+.++||||+             .++.......+..+|.+++|+|+..+. .      .+..+.+..+...++| +++++
T Consensus        86 ~i~liDtPGh-------------~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~v  152 (447)
T PLN00043         86 YCTVIDAPGH-------------RDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCC  152 (447)
T ss_pred             EEEEEECCCH-------------HHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEE
Confidence            7999999996             344455555566799999999998752 1      3455666667777885 68899


Q ss_pred             ecCCCCCc----hHHHHHHHHHHHHHHhcC--CCCCCeEEeeCCCCCCHHH
Q 024325          211 TKTDTVFP----IDVARRAMQIEESLKANN--SLVQPVMMVSSKSGAGIRS  255 (269)
Q Consensus       211 NK~Dl~~~----~~~~~~~~~~~~~~~~~~--~~~~~vi~vSa~~g~gi~~  255 (269)
                      ||+|+.+.    ....+..+.+...+....  ....+++++||++|+|+.+
T Consensus       153 NKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        153 NKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             EcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            99998632    234445556666665432  1246899999999999853

>TIGR00503 prfC peptide chain release factor 3

Probab=99.64  E-value=7.5e-15  Score=135.74  Aligned_cols=113  Identities=19%  Similarity=0.266  Sum_probs=76.9

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcC-ccccCCC-------------------CCceeE---eeEEEeCCcEEEEcCCCC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWG-VVRTSDK-------------------PGLTQT---INFFKLGTKLCLVDLPGY  148 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~-~~~~s~~-------------------~gtt~~---~~~~~~~~~~~lvDtpG~  148 (269)
                      ..+|+++|++|+|||||+++|+.... +...+..                   .|.|-.   ..+...+..+.+|||||+
T Consensus        11 ~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG~   90 (527)
T TIGR00503        11 RRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPGH   90 (527)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCCh
Confidence            35899999999999999999863211 1111111                   111111   123334778999999997


Q ss_pred             CCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCC
Q 024325          149 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF  217 (269)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~  217 (269)
                      .+             +.......+..+|.+++|+|+..++......+++.+...++|+++++||+|+..
T Consensus        91 ~d-------------f~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~  146 (527)
T TIGR00503        91 ED-------------FSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDI  146 (527)
T ss_pred             hh-------------HHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccC
Confidence            31             111222223349999999999988777777788877778899999999999863

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.63  E-value=2.1e-15  Score=132.09  Aligned_cols=163  Identities=24%  Similarity=0.207  Sum_probs=95.3

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCc----CccccCCCCCceeEeeEEEe--CCcEEEEcCCCCCCcchhHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQW----GVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~----~~~~~s~~~gtt~~~~~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~~  165 (269)
                      ..+|+|+|.+|+|||||||+|.|-.    +.+.++.. .||....-+..  -+.+.+||.||++.+.-+          .
T Consensus        35 ~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~-etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~----------~  103 (376)
T PF05049_consen   35 PLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVV-ETTMEPTPYPHPKFPNVTLWDLPGIGTPNFP----------P  103 (376)
T ss_dssp             -EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSH-SCCTS-EEEE-SS-TTEEEEEE--GGGSS------------H
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCC-cCCCCCeeCCCCCCCCCeEEeCCCCCCCCCC----------H
Confidence            3689999999999999999998731    22333332 24444443332  357999999999765211          1


Q ss_pred             HHHHh--cccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCch---------H----HHHHHHHHHH
Q 024325          166 KEYVS--TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPI---------D----VARRAMQIEE  230 (269)
Q Consensus       166 ~~~~~--~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~---------~----~~~~~~~~~~  230 (269)
                      ..|+.  .....|.++++.+.  .+...+.++...+...++|+++|.+|+|..-..         .    +....+...+
T Consensus       104 ~~Yl~~~~~~~yD~fiii~s~--rf~~ndv~La~~i~~~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~  181 (376)
T PF05049_consen  104 EEYLKEVKFYRYDFFIIISSE--RFTENDVQLAKEIQRMGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLE  181 (376)
T ss_dssp             HHHHHHTTGGG-SEEEEEESS--S--HHHHHHHHHHHHTT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHH
T ss_pred             HHHHHHccccccCEEEEEeCC--CCchhhHHHHHHHHHcCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHH
Confidence            22222  23347877666654  577888899999999999999999999962110         1    2333444455


Q ss_pred             HHHhcCCCCCCeEEeeCCC--CCCHHHHHHHHHHhhhhh
Q 024325          231 SLKANNSLVQPVMMVSSKS--GAGIRSLRTVLSKIARFA  267 (269)
Q Consensus       231 ~~~~~~~~~~~vi~vSa~~--g~gi~~L~~~i~~~~~~~  267 (269)
                      .+.......+++|.||+..  ...+..|.+.|.+.+...
T Consensus       182 ~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~  220 (376)
T PF05049_consen  182 NLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAH  220 (376)
T ss_dssp             HHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GG
T ss_pred             HHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHH
Confidence            5554444567899999976  466888998888766544

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.63  E-value=9.4e-15  Score=128.04  Aligned_cols=155  Identities=23%  Similarity=0.353  Sum_probs=125.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCc-CccccCCCCCceeEeeEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~-~~~~~s~~~gtt~~~~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~  169 (269)
                      .|+..|+-..|||||+.++++.. +...-....|+|-|..+++.   +..+.|+|+||+             ..++....
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh-------------~~~i~~mi   68 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGH-------------PDFISNLL   68 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCc-------------HHHHHHHH
Confidence            47889999999999999999863 22334456789999987764   567999999998             45556666


Q ss_pred             hcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcE-EEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCC
Q 024325          170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSK  248 (269)
Q Consensus       170 ~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~-iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~  248 (269)
                      .....+|.+++|||+.+++..+..+.+..+...+++- ++|+||+|+.++...+...+.+...+.   -...+++.+|++
T Consensus        69 ag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~~r~e~~i~~Il~~l~---l~~~~i~~~s~~  145 (447)
T COG3276          69 AGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEARIEQKIKQILADLS---LANAKIFKTSAK  145 (447)
T ss_pred             hhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccHHHHHHHHHHHHhhcc---cccccccccccc
Confidence            7777799999999999999999999999998888764 999999999987766555555544433   235788999999


Q ss_pred             CCCCHHHHHHHHHHhh
Q 024325          249 SGAGIRSLRTVLSKIA  264 (269)
Q Consensus       249 ~g~gi~~L~~~i~~~~  264 (269)
                      +|+||++|.+.|.+..
T Consensus       146 ~g~GI~~Lk~~l~~L~  161 (447)
T COG3276         146 TGRGIEELKNELIDLL  161 (447)
T ss_pred             cCCCHHHHHHHHHHhh
Confidence            9999999999999887

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.63  E-value=1.3e-14  Score=119.79  Aligned_cols=167  Identities=17%  Similarity=0.216  Sum_probs=107.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccC-CCCCceeEeeEE---EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTS-DKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s-~~~gtt~~~~~~---~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~  169 (269)
                      +|+++|.+|+||||++|.|+|.. ....+ ...++|..+...   ..+..+.+|||||+.++...+.  +....+.+.+.
T Consensus         2 ~IlllG~tGsGKSs~~N~ilg~~-~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~--~~~~~i~~~l~   78 (212)
T PF04548_consen    2 RILLLGKTGSGKSSLGNSILGKE-VFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDE--EIIREIKRCLS   78 (212)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS--SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHH--HHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhccc-ceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHH--HHHHHHHHHHH
Confidence            69999999999999999999984 33332 223445554332   3478899999999976533221  22234444444


Q ss_pred             hcccccceEEEEEeCCCCCCcchHHHHHHHHhh-C----CcEEEEEecCCCCCchHHHHHHH-----HHHHHHHhcCCCC
Q 024325          170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERS-Q----TKYQVVLTKTDTVFPIDVARRAM-----QIEESLKANNSLV  239 (269)
Q Consensus       170 ~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~-~----~p~iiv~NK~Dl~~~~~~~~~~~-----~~~~~~~~~~~~~  239 (269)
                      ...+..+++++|++.. .++..+...++.+... +    ..+++|+|.+|...+..+.+..+     .+++.+..+   .
T Consensus        79 ~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c---~  154 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKC---G  154 (212)
T ss_dssp             HTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHT---T
T ss_pred             hccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhc---C
Confidence            4566799999999988 7787788887777652 2    46899999999887766544333     244444444   3


Q ss_pred             CCeEEeeCC------CCCCHHHHHHHHHHhhhhh
Q 024325          240 QPVMMVSSK------SGAGIRSLRTVLSKIARFA  267 (269)
Q Consensus       240 ~~vi~vSa~------~g~gi~~L~~~i~~~~~~~  267 (269)
                      ..+..++.+      ....+.+|++.|.+.++..
T Consensus       155 ~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n  188 (212)
T PF04548_consen  155 GRYHVFNNKTKDKEKDESQVSELLEKIEEMVQEN  188 (212)
T ss_dssp             TCEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CEEEEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence            456666665      3456888998888877654

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>PRK13351 elongation factor G; Reviewed

Probab=99.63  E-value=6.1e-15  Score=141.45  Aligned_cols=115  Identities=18%  Similarity=0.239  Sum_probs=79.3

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcC-ccc---------cCC------CCCceeEe---eEEEeCCcEEEEcCCCCCCc
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWG-VVR---------TSD------KPGLTQTI---NFFKLGTKLCLVDLPGYGFA  151 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~-~~~---------~s~------~~gtt~~~---~~~~~~~~~~lvDtpG~~~~  151 (269)
                      ...+|+++|+.|+|||||+++|+.... ...         ..+      ..+.|...   .+...+..+.+|||||+.+.
T Consensus         7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df   86 (687)
T PRK13351          7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDF   86 (687)
T ss_pred             cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHH
Confidence            456899999999999999999985311 000         011      12223222   22334678999999997321


Q ss_pred             chhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCc
Q 024325          152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP  218 (269)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~  218 (269)
                                ......   .+..+|++++|+|+..+.......++..+...++|+++|+||+|+...
T Consensus        87 ----------~~~~~~---~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~  140 (687)
T PRK13351         87 ----------TGEVER---SLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGA  140 (687)
T ss_pred             ----------HHHHHH---HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCC
Confidence                      111122   223489999999999887777777888888889999999999999864

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.63  E-value=7.5e-15  Score=114.28  Aligned_cols=149  Identities=17%  Similarity=0.159  Sum_probs=98.0

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe-------eEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-------NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL  164 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~-------~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~  164 (269)
                      .+++.++|.+|+|||+|+.+++.+ +...+.+   .|-.+       .......++.+|||+|.          +.+.+.
T Consensus         6 ~fKyIiiGd~gVGKSclllrf~~k-rF~~~hd---~TiGvefg~r~~~id~k~IKlqiwDtaGq----------e~frsv   71 (216)
T KOG0098|consen    6 LFKYIIIGDTGVGKSCLLLRFTDK-RFQPVHD---LTIGVEFGARMVTIDGKQIKLQIWDTAGQ----------ESFRSV   71 (216)
T ss_pred             eEEEEEECCCCccHHHHHHHHhcc-Ccccccc---ceeeeeeceeEEEEcCceEEEEEEecCCc----------HHHHHH
Confidence            468999999999999999999998 3332222   33222       22223467999999997          445677


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHhh---CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCC
Q 024325          165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ  240 (269)
Q Consensus       165 ~~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~~---~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  240 (269)
                      ...|++.   +-.+++|.|.....+... ..++..+.++   +.-++++.||+||....++.+..-  ......   .+.
T Consensus        72 ~~syYr~---a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEG--eaFA~e---hgL  143 (216)
T KOG0098|consen   72 TRSYYRG---AAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEG--EAFARE---HGL  143 (216)
T ss_pred             HHHHhcc---CcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHH--HHHHHH---cCc
Confidence            7777776   778899998764322221 2344444443   345788999999986544432211  111111   256


Q ss_pred             CeEEeeCCCCCCHHHHHHHHHH
Q 024325          241 PVMMVSSKSGAGIRSLRTVLSK  262 (269)
Q Consensus       241 ~vi~vSa~~g~gi~~L~~~i~~  262 (269)
                      ..+.+||++++|+++.|..+..
T Consensus       144 ifmETSakt~~~VEEaF~nta~  165 (216)
T KOG0098|consen  144 IFMETSAKTAENVEEAFINTAK  165 (216)
T ss_pred             eeehhhhhhhhhHHHHHHHHHH
Confidence            7789999999999999965443

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.63  E-value=3.2e-14  Score=110.96  Aligned_cols=153  Identities=21%  Similarity=0.267  Sum_probs=112.2

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCcccc-------CC--CCCceeEeeEE----EeCCcEEEEcCCCCCCcchhHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRT-------SD--KPGLTQTINFF----KLGTKLCLVDLPGYGFAYAKEEVK  158 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~-------s~--~~gtt~~~~~~----~~~~~~~lvDtpG~~~~~~~~~~~  158 (269)
                      ..+|++.|+.++||||++.+++... ...+       +.  ...||.-+.+.    ..+..+.++||||+          
T Consensus        10 ~~KIvv~G~~~agKtTfv~~~s~k~-~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq----------   78 (187)
T COG2229          10 ETKIVVIGPVGAGKTTFVRALSDKP-LVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQ----------   78 (187)
T ss_pred             ceeEEEEcccccchhhHHHHhhccc-cceeeccccccccccccceeEeecccceEEcCcceEEEecCCCc----------
Confidence            4689999999999999999999873 1111       11  11255544332    23478999999997          


Q ss_pred             HHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhC-CcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCC
Q 024325          159 DAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ-TKYQVVLTKTDTVFPIDVARRAMQIEESLKANNS  237 (269)
Q Consensus       159 ~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~-~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~  237 (269)
                      +++..+.+.+.++   +..+++++|++.+.+.....+++.+.... +|+++++||.|+.+....++..+.+...+     
T Consensus        79 ~RF~fm~~~l~~g---a~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~-----  150 (187)
T COG2229          79 ERFKFMWEILSRG---AVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALKLEL-----  150 (187)
T ss_pred             HHHHHHHHHHhCC---cceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCHHHHHHHHHhcc-----
Confidence            3445555555555   89999999999877776678888888776 99999999999997655544444433221     


Q ss_pred             CCCCeEEeeCCCCCCHHHHHHHHHHh
Q 024325          238 LVQPVMMVSSKSGAGIRSLRTVLSKI  263 (269)
Q Consensus       238 ~~~~vi~vSa~~g~gi~~L~~~i~~~  263 (269)
                      ...|+|.++|..++|..+.++.+...
T Consensus       151 ~~~~vi~~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         151 LSVPVIEIDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             CCCceeeeecccchhHHHHHHHHHhh
Confidence            36899999999999999988877654

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.62  E-value=2.3e-14  Score=124.71  Aligned_cols=110  Identities=19%  Similarity=0.192  Sum_probs=72.6

Q ss_pred             CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCC
Q 024325          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  216 (269)
Q Consensus       137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~  216 (269)
                      +..+.|+||+|.+....         ....       .+|.+++++++..+   .+.+.+.. .......++|+||+|+.
T Consensus       148 g~d~viieT~Gv~qs~~---------~i~~-------~aD~vlvv~~p~~g---d~iq~~k~-gi~E~aDIiVVNKaDl~  207 (332)
T PRK09435        148 GYDVILVETVGVGQSET---------AVAG-------MVDFFLLLQLPGAG---DELQGIKK-GIMELADLIVINKADGD  207 (332)
T ss_pred             CCCEEEEECCCCccchh---------HHHH-------hCCEEEEEecCCch---HHHHHHHh-hhhhhhheEEeehhccc
Confidence            46699999999974311         1111       29999999864322   22221111 11223458999999998


Q ss_pred             CchHHHHHHHHHHHHHHhcC----CCCCCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325          217 FPIDVARRAMQIEESLKANN----SLVQPVMMVSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~----~~~~~vi~vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      ...........+...+....    .+..|++++||++|.|+++|++.|.+.+.+
T Consensus       208 ~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~  261 (332)
T PRK09435        208 NKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAA  261 (332)
T ss_pred             chhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            76655555556665554322    234789999999999999999999987654

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.62  E-value=3.9e-15  Score=118.19  Aligned_cols=152  Identities=18%  Similarity=0.134  Sum_probs=101.3

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCC-CC---CceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-KP---GLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~-~~---gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      .++|+++|.+++|||-|+.+++.. ....-+. ..   +.|+.+.......+..+|||+|.          ++++.+...
T Consensus        14 lFKiVliGDS~VGKsnLlsRftrn-EF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQ----------ERyrAitSa   82 (222)
T KOG0087|consen   14 LFKIVLIGDSAVGKSNLLSRFTRN-EFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQ----------ERYRAITSA   82 (222)
T ss_pred             EEEEEEeCCCccchhHHHHHhccc-ccCcccccceeEEEEeeceeecCcEEEEeeecccch----------hhhccccch
Confidence            578999999999999999999987 3222221 11   12333333333456789999996          445666777


Q ss_pred             HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHhh---CCcEEEEEecCCCCCchHHHH-HHHHHHHHHHhcCCCCCCe
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVAR-RAMQIEESLKANNSLVQPV  242 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~~---~~p~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~v  242 (269)
                      |++.   +..+++|.|.....+... ..++..|..+   ++++++|.||+||..-..... ..+.+.+      ......
T Consensus        83 YYrg---AvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae------~~~l~f  153 (222)
T KOG0087|consen   83 YYRG---AVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAE------KEGLFF  153 (222)
T ss_pred             hhcc---cceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHH------hcCceE
Confidence            7776   888999999875433332 4566666554   578999999999986211111 0111111      124678


Q ss_pred             EEeeCCCCCCHHHHHHHHHHh
Q 024325          243 MMVSSKSGAGIRSLRTVLSKI  263 (269)
Q Consensus       243 i~vSa~~g~gi~~L~~~i~~~  263 (269)
                      +.+||..+.|++..++.+...
T Consensus       154 ~EtSAl~~tNVe~aF~~~l~~  174 (222)
T KOG0087|consen  154 LETSALDATNVEKAFERVLTE  174 (222)
T ss_pred             EEecccccccHHHHHHHHHHH
Confidence            999999999999999766543

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.60  E-value=5.8e-15  Score=110.48  Aligned_cols=154  Identities=17%  Similarity=0.169  Sum_probs=102.9

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE--E-eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF--K-LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~--~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~  169 (269)
                      ..+.++|--|+|||||+|.+.....    +.+.+.|...+..  + ....+.+||.||...          +..+-+.|.
T Consensus        21 mel~lvGLq~sGKtt~Vn~ia~g~~----~edmiptvGfnmrk~tkgnvtiklwD~gGq~r----------frsmWeryc   86 (186)
T KOG0075|consen   21 MELSLVGLQNSGKTTLVNVIARGQY----LEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR----------FRSMWERYC   86 (186)
T ss_pred             eeEEEEeeccCCcceEEEEEeeccc----hhhhcccccceeEEeccCceEEEEEecCCCcc----------HHHHHHHHh
Confidence            4799999999999999998776411    1222233333322  2 245688999999742          244444555


Q ss_pred             hcccccceEEEEEeCCCC--CCcchHHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEE
Q 024325          170 STRVSLKRVCLLIDTKWG--VKPRDHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM  244 (269)
Q Consensus       170 ~~~~~~d~vl~vid~~~~--~~~~~~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~  244 (269)
                      +.   +++++|++|++++  ++....++.+.+..   .++|+++..||.|+.++-........+.  +.........++.
T Consensus        87 R~---v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmg--L~sitdREvcC~s  161 (186)
T KOG0075|consen   87 RG---VSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMG--LSSITDREVCCFS  161 (186)
T ss_pred             hc---CcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhC--ccccccceEEEEE
Confidence            54   9999999999863  22233455555544   4799999999999987654443333221  1111222456899


Q ss_pred             eeCCCCCCHHHHHHHHHHhhh
Q 024325          245 VSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       245 vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      |||+...|+|.+.+||.+.-.
T Consensus       162 iScke~~Nid~~~~Wli~hsk  182 (186)
T KOG0075|consen  162 ISCKEKVNIDITLDWLIEHSK  182 (186)
T ss_pred             EEEcCCccHHHHHHHHHHHhh
Confidence            999999999999999988654

>PRK13768 GTPase; Provisional

Probab=99.60  E-value=1.5e-14  Score=122.38  Aligned_cols=122  Identities=25%  Similarity=0.317  Sum_probs=80.4

Q ss_pred             CcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHH-----hhCCcEEEEEec
Q 024325          138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLME-----RSQTKYQVVLTK  212 (269)
Q Consensus       138 ~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~-----~~~~p~iiv~NK  212 (269)
                      ..+.++||||..+....   ...+..+.+.... .. .+++++|+|+.......+.....++.     ..++|+++|+||
T Consensus        97 ~~~~~~d~~g~~~~~~~---~~~~~~~~~~l~~-~~-~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK  171 (253)
T PRK13768         97 ADYVLVDTPGQMELFAF---RESGRKLVERLSG-SS-KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNK  171 (253)
T ss_pred             CCEEEEeCCcHHHHHhh---hHHHHHHHHHHHh-cC-CeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEh
Confidence            35999999997543221   2223333333322 22 78999999998765555544433332     468999999999


Q ss_pred             CCCCCchHHHHHHHHHHH------------------------HHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          213 TDTVFPIDVARRAMQIEE------------------------SLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       213 ~Dl~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      +|+.+..+.......+..                        .+... ....+++++||++++|+++|+++|.+.+.
T Consensus       172 ~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~-~~~~~vi~iSa~~~~gl~~L~~~I~~~l~  247 (253)
T PRK13768        172 ADLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEET-GLPVRVIPVSAKTGEGFDELYAAIQEVFC  247 (253)
T ss_pred             HhhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHH-CCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence            999987665444333331                        11111 12368999999999999999999988764

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.59  E-value=4.4e-14  Score=122.99  Aligned_cols=153  Identities=20%  Similarity=0.274  Sum_probs=105.2

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcC-----------------------cc------ccCCCCCceeEee---EEEeCC
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWG-----------------------VV------RTSDKPGLTQTIN---FFKLGT  138 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~-----------------------~~------~~s~~~gtt~~~~---~~~~~~  138 (269)
                      ...+++++|++++|||||+-+|+-...                       .+      ......|.|-+..   |.+..+
T Consensus         6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~   85 (428)
T COG5256           6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKY   85 (428)
T ss_pred             CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCc
Confidence            346899999999999999988763210                       00      0112345566653   333456


Q ss_pred             cEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCC-------CCcchHHHHHHHHhhCC-cEEEEE
Q 024325          139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------VKPRDHELISLMERSQT-KYQVVL  210 (269)
Q Consensus       139 ~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~-------~~~~~~~~~~~l~~~~~-p~iiv~  210 (269)
                      .++++|+||+             ++++...+.....+|+.++|||++.+       ...+..+.+-.....++ .+|+++
T Consensus        86 ~~tIiDaPGH-------------rdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVav  152 (428)
T COG5256          86 NFTIIDAPGH-------------RDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAV  152 (428)
T ss_pred             eEEEeeCCch-------------HHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEE
Confidence            6999999996             46677778888889999999999876       55666666666666665 589999


Q ss_pred             ecCCCCCch--HHHHHHHHHHHHHHhcC--CCCCCeEEeeCCCCCCHHHH
Q 024325          211 TKTDTVFPI--DVARRAMQIEESLKANN--SLVQPVMMVSSKSGAGIRSL  256 (269)
Q Consensus       211 NK~Dl~~~~--~~~~~~~~~~~~~~~~~--~~~~~vi~vSa~~g~gi~~L  256 (269)
                      ||+|+++-.  ..++....+...+....  ....+++|||+..|+|+.+-
T Consensus       153 NKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~  202 (428)
T COG5256         153 NKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK  202 (428)
T ss_pred             EcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence            999999632  23334444444332222  22467999999999998754

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.59  E-value=4.6e-14  Score=105.95  Aligned_cols=151  Identities=17%  Similarity=0.180  Sum_probs=99.8

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE-----eCCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~-----~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      .++|+++|..|+|||.|+.+++...  .+++.-.....|...-+     ...++.+|||+|.          ++++.+..
T Consensus         7 lfkivlvgnagvgktclvrrftqgl--fppgqgatigvdfmiktvev~gekiklqiwdtagq----------erfrsitq   74 (213)
T KOG0095|consen    7 LFKIVLVGNAGVGKTCLVRRFTQGL--FPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQ----------ERFRSITQ   74 (213)
T ss_pred             eEEEEEEccCCcCcchhhhhhhccC--CCCCCCceeeeeEEEEEEEECCeEEEEEEeeccch----------HHHHHHHH
Confidence            4689999999999999999999762  22222221223333222     2456899999995          56677788


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHhh---CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  242 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~~---~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  242 (269)
                      .|++.   ++++++|.|.+...+... .+++..+++.   ++--|+|.||+|+.+..++....   -+.+....  ..-+
T Consensus        75 syyrs---ahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qi---geefs~~q--dmyf  146 (213)
T KOG0095|consen   75 SYYRS---AHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQI---GEEFSEAQ--DMYF  146 (213)
T ss_pred             HHhhh---cceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHH---HHHHHHhh--hhhh
Confidence            88776   899999999874322222 3555555542   34468999999998765544322   11111111  1235


Q ss_pred             EEeeCCCCCCHHHHHHHHHH
Q 024325          243 MMVSSKSGAGIRSLRTVLSK  262 (269)
Q Consensus       243 i~vSa~~g~gi~~L~~~i~~  262 (269)
                      +.+||+..+|++.|+..+.-
T Consensus       147 letsakea~nve~lf~~~a~  166 (213)
T KOG0095|consen  147 LETSAKEADNVEKLFLDLAC  166 (213)
T ss_pred             hhhcccchhhHHHHHHHHHH
Confidence            78999999999999976643

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.59  E-value=6.3e-15  Score=115.01  Aligned_cols=160  Identities=16%  Similarity=0.195  Sum_probs=109.8

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~  169 (269)
                      ..-.+|+++|--||||||++..|--. ++..+.|..|.......+ .+..+.+||..|...      .+..|....    
T Consensus        15 ~~e~~IlmlGLD~AGKTTILykLk~~-E~vttvPTiGfnVE~v~y-kn~~f~vWDvGGq~k------~R~lW~~Y~----   82 (181)
T KOG0070|consen   15 KKEMRILMVGLDAAGKTTILYKLKLG-EIVTTVPTIGFNVETVEY-KNISFTVWDVGGQEK------LRPLWKHYF----   82 (181)
T ss_pred             cceEEEEEEeccCCCceeeeEeeccC-CcccCCCccccceeEEEE-cceEEEEEecCCCcc------cccchhhhc----
Confidence            34458999999999999999998776 334344443433333332 388899999999732      333444332    


Q ss_pred             hcccccceEEEEEeCCCC--CCcchHHHHHHHHhh---CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEE
Q 024325          170 STRVSLKRVCLLIDTKWG--VKPRDHELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM  244 (269)
Q Consensus       170 ~~~~~~d~vl~vid~~~~--~~~~~~~~~~~l~~~---~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~  244 (269)
                      .   +.+.++||+|+++.  +.....++...+...   +.|+++..||.|+..+-...++.+.+.  +.........+-.
T Consensus        83 ~---~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~--l~~l~~~~w~iq~  157 (181)
T KOG0070|consen   83 Q---NTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLG--LHSLRSRNWHIQS  157 (181)
T ss_pred             c---CCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhh--hhccCCCCcEEee
Confidence            2   38999999999853  223334555555443   579999999999987766555444333  2233334566888


Q ss_pred             eeCCCCCCHHHHHHHHHHhhhh
Q 024325          245 VSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       245 vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      ++|.+|+|+.+-++||...+..
T Consensus       158 ~~a~~G~GL~egl~wl~~~~~~  179 (181)
T KOG0070|consen  158 TCAISGEGLYEGLDWLSNNLKK  179 (181)
T ss_pred             ccccccccHHHHHHHHHHHHhc
Confidence            9999999999999999988764

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.59  E-value=1.5e-14  Score=105.55  Aligned_cols=143  Identities=20%  Similarity=0.235  Sum_probs=99.2

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR  172 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~  172 (269)
                      .+++++|..|+|||||+++|-|.+ ..     +--|+-+.|...+    .+||||-...         ..........+.
T Consensus         2 Kri~~vG~~gcGKTtL~q~L~G~~-~l-----ykKTQAve~~d~~----~IDTPGEy~~---------~~~~Y~aL~tt~   62 (148)
T COG4917           2 KRIAFVGQVGCGKTTLFQSLYGND-TL-----YKKTQAVEFNDKG----DIDTPGEYFE---------HPRWYHALITTL   62 (148)
T ss_pred             ceeEEecccccCchhHHHHhhcch-hh-----hcccceeeccCcc----ccCCchhhhh---------hhHHHHHHHHHh
Confidence            379999999999999999999984 11     1134555554333    4999996431         122333344455


Q ss_pred             cccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCC
Q 024325          173 VSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAG  252 (269)
Q Consensus       173 ~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~g  252 (269)
                      ..+|++++|-.+.++.+.....++.   -...|+|-|++|+|+.++.+++.....+.+.      ...++|.+|+.+..|
T Consensus        63 ~dadvi~~v~~and~~s~f~p~f~~---~~~k~vIgvVTK~DLaed~dI~~~~~~L~ea------Ga~~IF~~s~~d~~g  133 (148)
T COG4917          63 QDADVIIYVHAANDPESRFPPGFLD---IGVKKVIGVVTKADLAEDADISLVKRWLREA------GAEPIFETSAVDNQG  133 (148)
T ss_pred             hccceeeeeecccCccccCCccccc---ccccceEEEEecccccchHhHHHHHHHHHHc------CCcceEEEeccCccc
Confidence            5689999998877654444333322   2346799999999999877766555544432      257899999999999


Q ss_pred             HHHHHHHHHHh
Q 024325          253 IRSLRTVLSKI  263 (269)
Q Consensus       253 i~~L~~~i~~~  263 (269)
                      +++|++.|...
T Consensus       134 v~~l~~~L~~~  144 (148)
T COG4917         134 VEELVDYLASL  144 (148)
T ss_pred             HHHHHHHHHhh
Confidence            99999998653

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.58  E-value=9.9e-14  Score=114.79  Aligned_cols=157  Identities=17%  Similarity=0.159  Sum_probs=96.6

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCc-e-eEeeEEEe----CCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL-T-QTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gt-t-~~~~~~~~----~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      .+|+++|.+|||||||+++|.+.. .  ...++.| . ........    ...+.+|||+|+.          .+..+..
T Consensus         6 ~kivv~G~~g~GKTtl~~~l~~~~-~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~----------~~~~~~~   72 (219)
T COG1100           6 FKIVVLGDGGVGKTTLLNRLVGDE-F--PEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQE----------EYRSLRP   72 (219)
T ss_pred             EEEEEEcCCCccHHHHHHHHhcCc-C--cccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHH----------HHHHHHH
Confidence            589999999999999999999873 2  2222222 2 22222222    2348899999962          2334455


Q ss_pred             HHHhcccccceEEEEEeCCCC--CCcchHHHHHHHHhh---CCcEEEEEecCCCCCchHHHHHHH----------HHHHH
Q 024325          167 EYVSTRVSLKRVCLLIDTKWG--VKPRDHELISLMERS---QTKYQVVLTKTDTVFPIDVARRAM----------QIEES  231 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~--~~~~~~~~~~~l~~~---~~p~iiv~NK~Dl~~~~~~~~~~~----------~~~~~  231 (269)
                      .|...   ++.+++++|....  .......+...+...   ..|+++|.||+|+...........          .....
T Consensus        73 ~y~~~---~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (219)
T COG1100          73 EYYRG---ANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPK  149 (219)
T ss_pred             HHhcC---CCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhH
Confidence            55444   8899999987641  222223444444443   489999999999997643221110          00000


Q ss_pred             HHhcCCCCCCeEEeeCC--CCCCHHHHHHHHHHhhh
Q 024325          232 LKANNSLVQPVMMVSSK--SGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       232 ~~~~~~~~~~vi~vSa~--~g~gi~~L~~~i~~~~~  265 (269)
                      ..........++.+|++  ++.|+++++..+...+.
T Consensus       150 ~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~  185 (219)
T COG1100         150 AVLPEVANPALLETSAKSLTGPNVNELFKELLRKLL  185 (219)
T ss_pred             HhhhhhcccceeEeecccCCCcCHHHHHHHHHHHHH
Confidence            00111112338999999  99999999988877663

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.58  E-value=4.4e-14  Score=116.59  Aligned_cols=122  Identities=20%  Similarity=0.219  Sum_probs=78.8

Q ss_pred             cEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcch-----HHHHHHHHhhCCcEEEEEecC
Q 024325          139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-----HELISLMERSQTKYQVVLTKT  213 (269)
Q Consensus       139 ~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~-----~~~~~~l~~~~~p~iiv~NK~  213 (269)
                      .++++||||..+.+.+..-    ..++-..+.+.. .-+++||+|....-.+..     ......+.+...|+|+|+||+
T Consensus       117 ~~~liDTPGQIE~FtWSAs----GsIIte~lass~-ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~  191 (366)
T KOG1532|consen  117 DYVLIDTPGQIEAFTWSAS----GSIITETLASSF-PTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKT  191 (366)
T ss_pred             CEEEEcCCCceEEEEecCC----ccchHhhHhhcC-CeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEecc
Confidence            3899999999876443211    122222222211 457889999875433332     344456677889999999999


Q ss_pred             CCCCchHHHHHHHHHHHHHHhcCC---------------------CCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          214 DTVFPIDVARRAMQIEESLKANNS---------------------LVQPVMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       214 Dl~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      |+.++.-..++...+..+-.....                     .....+.|||.+|+|+++++..+...+.
T Consensus       192 Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vd  264 (366)
T KOG1532|consen  192 DVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVD  264 (366)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHH
Confidence            999886665555443322111110                     1456899999999999999999877654

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.58  E-value=5.3e-14  Score=137.42  Aligned_cols=147  Identities=22%  Similarity=0.322  Sum_probs=99.6

Q ss_pred             CChHHHHHHHhcCcCccccCCCCCceeEeeEEEeC---------------------CcEEEEcCCCCCCcchhHHHHHHH
Q 024325          103 VGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG---------------------TKLCLVDLPGYGFAYAKEEVKDAW  161 (269)
Q Consensus       103 ~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~---------------------~~~~lvDtpG~~~~~~~~~~~~~~  161 (269)
                      ++||||+.+|.+. .+ .....-|.|+++-.+...                     +.+.||||||+..          +
T Consensus       472 ~~KTtLLD~iR~t-~v-~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~----------F  539 (1049)
T PRK14845        472 VHNTTLLDKIRKT-RV-AKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEA----------F  539 (1049)
T ss_pred             cccccHHHHHhCC-Cc-ccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHH----------H
Confidence            3599999999998 33 334455678876433211                     2389999999621          1


Q ss_pred             HHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchH--------------HHHHHHH
Q 024325          162 EELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID--------------VARRAMQ  227 (269)
Q Consensus       162 ~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~--------------~~~~~~~  227 (269)
                      ..+.   ......+|++++|+|++.++..++.+.+..+...++|+++|+||+|+.+...              .....+.
T Consensus       540 ~~lr---~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~e  616 (1049)
T PRK14845        540 TSLR---KRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTE  616 (1049)
T ss_pred             HHHH---HhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHH
Confidence            2222   2233458999999999988888888888888888999999999999974311              0111111


Q ss_pred             HHH-------HHHhc------------CCCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325          228 IEE-------SLKAN------------NSLVQPVMMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       228 ~~~-------~~~~~------------~~~~~~vi~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      +..       .+...            .....++++|||++|+|+++|+++|....
T Consensus       617 l~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~  672 (1049)
T PRK14845        617 LEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA  672 (1049)
T ss_pred             HHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence            111       11111            12357899999999999999999987544

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=99.58  E-value=3.8e-14  Score=130.14  Aligned_cols=160  Identities=23%  Similarity=0.365  Sum_probs=115.6

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee--EEEe-------------------CCcEEEEcCCCCC
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL-------------------GTKLCLVDLPGYG  149 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~--~~~~-------------------~~~~~lvDtpG~~  149 (269)
                      ..|.+||+|+..+|||-|+..+.+..  ..-+...|+|+.+.  |+..                   -+.+.+|||||+ 
T Consensus       474 RSPIcCilGHVDTGKTKlld~ir~tN--VqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpgh-  550 (1064)
T KOG1144|consen  474 RSPICCILGHVDTGKTKLLDKIRGTN--VQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGH-  550 (1064)
T ss_pred             CCceEEEeecccccchHHHHHhhccc--cccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCc-
Confidence            46899999999999999999999873  45566667777652  2221                   145899999996 


Q ss_pred             CcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchH------H--
Q 024325          150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID------V--  221 (269)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~------~--  221 (269)
                                  ..+.+--.+....||++|+|+|..+++.++..+.+++|...+.|+|+++||+|.+....      +  
T Consensus       551 ------------EsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~  618 (1064)
T KOG1144|consen  551 ------------ESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVE  618 (1064)
T ss_pred             ------------hhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHH
Confidence                        23333333445569999999999999999999999999999999999999999974311      1  


Q ss_pred             --H----HHHHHHHHHH-------Hh--------c----CCCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          222 --A----RRAMQIEESL-------KA--------N----NSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       222 --~----~~~~~~~~~~-------~~--------~----~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                        .    .....++..+       ..        +    ......++|+||.+|+||.+|+-+|....+
T Consensus       619 ~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQ  687 (1064)
T KOG1144|consen  619 ALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQ  687 (1064)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHH
Confidence              0    0111111111       11        0    011356899999999999999999988654

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.58  E-value=3.1e-14  Score=124.77  Aligned_cols=85  Identities=24%  Similarity=0.319  Sum_probs=66.3

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE--e-C-----------------CcEEEEcCCCCCCcc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--L-G-----------------TKLCLVDLPGYGFAY  152 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~--~-~-----------------~~~~lvDtpG~~~~~  152 (269)
                      ++|+++|.||+|||||+|+|++. . +.++++|+||.+.+...  . +                 ..+.++||||+....
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~-~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a   80 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKA-G-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA   80 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC-C-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence            58999999999999999999998 4 78999999998865321  1 1                 248999999997643


Q ss_pred             hhHHHHHHHHHHHHHHHhcccccceEEEEEeCC
Q 024325          153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK  185 (269)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~  185 (269)
                      ...      ..+...++.....+|++++|+|+.
T Consensus        81 ~~g------~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         81 SKG------EGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             ChH------HHHHHHHHHHHHhCCEEEEEEeCC
Confidence            221      234556777777799999999985

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.56  E-value=2.3e-13  Score=115.66  Aligned_cols=159  Identities=22%  Similarity=0.332  Sum_probs=117.1

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCc-----CccccCCCCCceeEeeEEEe------------CCcEEEEcCCCCCCcchhH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKPGLTQTINFFKL------------GTKLCLVDLPGYGFAYAKE  155 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~-----~~~~~s~~~gtt~~~~~~~~------------~~~~~lvDtpG~~~~~~~~  155 (269)
                      .+++++|+..+|||||..+|..-.     +....|...|.|.|.-|...            ...+.++|+||.       
T Consensus         8 ~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGH-------   80 (522)
T KOG0461|consen    8 LNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGH-------   80 (522)
T ss_pred             eeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCc-------
Confidence            689999999999999999987531     12234556677777655432            234799999997       


Q ss_pred             HHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchH----HHHHHHHHHHH
Q 024325          156 EVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID----VARRAMQIEES  231 (269)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~----~~~~~~~~~~~  231 (269)
                            ..+++..+....-.|+.++|+|+..+.+++..+.+-.-.......++|+||+|..+...    +++....+.+-
T Consensus        81 ------asLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~k~~kk~~Kt  154 (522)
T KOG0461|consen   81 ------ASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIEKSAKKVRKT  154 (522)
T ss_pred             ------HHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccchhhhhHHHHHHHHHHHH
Confidence                  46667777777779999999999989888887766555555678899999999987643    33333444444


Q ss_pred             HHhcCC-CCCCeEEeeCCCC----CCHHHHHHHHHHhh
Q 024325          232 LKANNS-LVQPVMMVSSKSG----AGIRSLRTVLSKIA  264 (269)
Q Consensus       232 ~~~~~~-~~~~vi~vSa~~g----~gi~~L~~~i~~~~  264 (269)
                      +....- ...|++++||+.|    ++|.+|.+.|...+
T Consensus       155 Le~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~i  192 (522)
T KOG0461|consen  155 LESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRI  192 (522)
T ss_pred             HHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhh
Confidence            444332 3489999999999    89999999887654

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=99.56  E-value=2.9e-14  Score=116.24  Aligned_cols=157  Identities=20%  Similarity=0.225  Sum_probs=108.8

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      +--+|+++|.|++|||||+..++..+  +....+.+||..+.   ..+.|..+.++|.||+.+..++..-      -.++
T Consensus        61 GdaRValIGfPSVGKStlLs~iT~T~--SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkG------RGRQ  132 (364)
T KOG1486|consen   61 GDARVALIGFPSVGKSTLLSKITSTH--SEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKG------RGRQ  132 (364)
T ss_pred             CCeEEEEecCCCccHHHHHHHhhcch--hhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCC------CCce
Confidence            44589999999999999999999875  56777888887763   4456888999999999765332210      1134


Q ss_pred             HHhcccccceEEEEEeCCCCCCcc------------------------------------------h-------------
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPR------------------------------------------D-------------  192 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~------------------------------------------~-------------  192 (269)
                      ..+....+|++++|+|+.......                                          +             
T Consensus       133 viavArtaDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI  212 (364)
T KOG1486|consen  133 VIAVARTADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKI  212 (364)
T ss_pred             EEEEeecccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHee
Confidence            445556689999999986421110                                          0             


Q ss_pred             -------------HHHHHHHHhhC--CcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHH
Q 024325          193 -------------HELISLMERSQ--TKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLR  257 (269)
Q Consensus       193 -------------~~~~~~l~~~~--~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~  257 (269)
                                   .++++.+..+.  ++++.|.||+|.++-++..+...            .+.-+-+||.-..|++.|+
T Consensus       213 ~Naevl~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~vs~eevdrlAr------------~PnsvViSC~m~lnld~ll  280 (364)
T KOG1486|consen  213 HNAEVLFREDCTVDDFIDVIEGNRVYIKCLYVYNKIDQVSIEEVDRLAR------------QPNSVVISCNMKLNLDRLL  280 (364)
T ss_pred             ccceEEEecCCChHHHHHHHhccceEEEEEEEeeccceecHHHHHHHhc------------CCCcEEEEeccccCHHHHH
Confidence                         01112222222  46889999999987655543221            2456889999999999999


Q ss_pred             HHHHHhhhhh
Q 024325          258 TVLSKIARFA  267 (269)
Q Consensus       258 ~~i~~~~~~~  267 (269)
                      +.|++.+.-.
T Consensus       281 e~iWe~l~L~  290 (364)
T KOG1486|consen  281 ERIWEELNLV  290 (364)
T ss_pred             HHHHHHhceE
Confidence            9999987543

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.55  E-value=1.3e-13  Score=118.02  Aligned_cols=123  Identities=21%  Similarity=0.216  Sum_probs=84.7

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      ..++|+++|.+|+||||++|+|++. ..+.++...+++....   ....+..+.+|||||+.+.....   +........
T Consensus        37 ~~~rIllvGktGVGKSSliNsIlG~-~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~---e~~~~~ik~  112 (313)
T TIGR00991        37 SSLTILVMGKGGVGKSSTVNSIIGE-RIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYIN---DQAVNIIKR  112 (313)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCC-CcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHH---HHHHHHHHH
Confidence            4578999999999999999999998 5667777766544432   22347789999999997652211   112233444


Q ss_pred             HHhcccccceEEEEEeCC-CCCCcchHHHHHHHHhh-----CCcEEEEEecCCCCCc
Q 024325          168 YVSTRVSLKRVCLLIDTK-WGVKPRDHELISLMERS-----QTKYQVVLTKTDTVFP  218 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~-~~~~~~~~~~~~~l~~~-----~~p~iiv~NK~Dl~~~  218 (269)
                      |... ...|+++||...+ ..+...+.++++.+...     -.++|+|+|++|..++
T Consensus       113 ~l~~-~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~p  168 (313)
T TIGR00991       113 FLLG-KTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPP  168 (313)
T ss_pred             Hhhc-CCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCC
Confidence            4433 3589999995433 24555667777766542     2579999999998854

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=99.55  E-value=5e-14  Score=105.60  Aligned_cols=154  Identities=16%  Similarity=0.157  Sum_probs=104.5

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCC-ceeEeeEEEe-----CCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG-LTQTINFFKL-----GTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~g-tt~~~~~~~~-----~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      +..+|+|.+|+|||||+-++...   .+..++.. +..|....+.     ..++.+|||+|.          +++..+..
T Consensus         9 fkllIigDsgVGKssLl~rF~dd---tFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGq----------ErFrtits   75 (198)
T KOG0079|consen    9 FKLLIIGDSGVGKSSLLLRFADD---TFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQ----------ERFRTITS   75 (198)
T ss_pred             HHHHeecCCcccHHHHHHHHhhc---ccccceEEEeeeeEEEEEeecCCcEEEEEEeecccH----------HHHHHHHH
Confidence            45789999999999999998876   23333322 2233333333     245889999995          56677777


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHhh--CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeE
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM  243 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi  243 (269)
                      .|+++   .+++++|.|..++..... ..+++.+...  ..|-++|.||.|..+.......  .....   ....+..+|
T Consensus        76 tyyrg---thgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~--dAr~~---A~~mgie~F  147 (198)
T KOG0079|consen   76 TYYRG---THGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTE--DARAF---ALQMGIELF  147 (198)
T ss_pred             HHccC---CceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccceeeehH--HHHHH---HHhcCchhe
Confidence            77776   899999999876543332 4566666543  4788999999998764322111  11111   112367889


Q ss_pred             EeeCCCCCCHHHHHHHHHHhhhhh
Q 024325          244 MVSSKSGAGIRSLRTVLSKIARFA  267 (269)
Q Consensus       244 ~vSa~~g~gi~~L~~~i~~~~~~~  267 (269)
                      .+|||..+|++..|.-|-+.+-.+
T Consensus       148 ETSaKe~~NvE~mF~cit~qvl~~  171 (198)
T KOG0079|consen  148 ETSAKENENVEAMFHCITKQVLQA  171 (198)
T ss_pred             ehhhhhcccchHHHHHHHHHHHHH
Confidence            999999999999999887766443

>PRK12740 elongation factor G; Reviewed

Probab=99.55  E-value=7.2e-14  Score=133.77  Aligned_cols=108  Identities=22%  Similarity=0.260  Sum_probs=73.5

Q ss_pred             EcCCCCChHHHHHHHhcCcCc-cccC---------C------CCCceeEe---eEEEeCCcEEEEcCCCCCCcchhHHHH
Q 024325           98 AGRSNVGKSSMLNALTRQWGV-VRTS---------D------KPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVK  158 (269)
Q Consensus        98 vG~~~~GKSsLin~l~~~~~~-~~~s---------~------~~gtt~~~---~~~~~~~~~~lvDtpG~~~~~~~~~~~  158 (269)
                      +|++|+|||||+++|+..... ...+         +      ..|.|.+.   .+...+..+.+|||||...        
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~--------   72 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVD--------   72 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHH--------
Confidence            599999999999999654211 0111         1      12333332   2334477899999999732        


Q ss_pred             HHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCc
Q 024325          159 DAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP  218 (269)
Q Consensus       159 ~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~  218 (269)
                           +.......+..+|++++|+|++.+.......++..+...++|+++|+||+|+...
T Consensus        73 -----~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~  127 (668)
T PRK12740         73 -----FTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGA  127 (668)
T ss_pred             -----HHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCCC
Confidence                 1111122223499999999999877777777778787788999999999998753

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.55  E-value=2e-13  Score=111.63  Aligned_cols=140  Identities=13%  Similarity=0.097  Sum_probs=81.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCce---eEeeEEEe--------CCcEEEEcCCCCCCcchhHHHHHHHH
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT---QTINFFKL--------GTKLCLVDLPGYGFAYAKEEVKDAWE  162 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt---~~~~~~~~--------~~~~~lvDtpG~~~~~~~~~~~~~~~  162 (269)
                      +|+++|.+|+|||||++++++..   +...+..|.   ........        ...+.+|||+|...          +.
T Consensus         2 KIvlvGd~gVGKTSLi~~~~~~~---f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~----------~~   68 (202)
T cd04102           2 RVLVVGDSGVGKSSLVHLICKNQ---VLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSES----------VK   68 (202)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC---CCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchh----------HH
Confidence            69999999999999999999873   222222221   11111111        23588999999622          23


Q ss_pred             HHHHHHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh----------------------hCCcEEEEEecCCCCCch
Q 024325          163 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----------------------SQTKYQVVLTKTDTVFPI  219 (269)
Q Consensus       163 ~~~~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----------------------~~~p~iiv~NK~Dl~~~~  219 (269)
                      .+...|+..   +|++++|+|.+...+... ..++..+..                      .++|+++|.||+|+.+..
T Consensus        69 ~l~~~~yr~---ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r  145 (202)
T cd04102          69 STRAVFYNQ---VNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEK  145 (202)
T ss_pred             HHHHHHhCc---CCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhc
Confidence            344444443   999999999876433222 233333322                      257999999999997542


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCeEEeeCCCC
Q 024325          220 DVARRAMQIEESLKANNSLVQPVMMVSSKSG  250 (269)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g  250 (269)
                      .............. ....+.|-+.++|+..
T Consensus       146 ~~~~~~~~~~~~~i-a~~~~~~~i~~~c~~~  175 (202)
T cd04102         146 ESSGNLVLTARGFV-AEQGNAEEINLNCTNG  175 (202)
T ss_pred             ccchHHHhhHhhhH-HHhcCCceEEEecCCc
Confidence            22111111000000 0123577888888864

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.55  E-value=1.9e-13  Score=119.82  Aligned_cols=164  Identities=18%  Similarity=0.241  Sum_probs=103.7

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcCc---Ccc-----------ccCCCCC---ceeEeeEEE-------e----CCcEE
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQW---GVV-----------RTSDKPG---LTQTINFFK-------L----GTKLC  141 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~~---~~~-----------~~s~~~g---tt~~~~~~~-------~----~~~~~  141 (269)
                      .+.+.|+++|+.|+|||||+|++.+.-   .++           .+++.+|   ||.+..+..       .    ..++.
T Consensus        15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr   94 (492)
T TIGR02836        15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR   94 (492)
T ss_pred             CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence            345689999999999999999999861   123           6788899   888876621       1    26799


Q ss_pred             EEcCCCCCCcchhHH--------HHHHHHH-----------HHHHHHhcccccceEEEEE-eCC------CCCCcchHHH
Q 024325          142 LVDLPGYGFAYAKEE--------VKDAWEE-----------LVKEYVSTRVSLKRVCLLI-DTK------WGVKPRDHEL  195 (269)
Q Consensus       142 lvDtpG~~~~~~~~~--------~~~~~~~-----------~~~~~~~~~~~~d~vl~vi-d~~------~~~~~~~~~~  195 (269)
                      ++||+|+...-....        +...|-+           -.+..+.  ..+++.++|. |++      ......+.++
T Consensus        95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~--dhstIgivVtTDgsi~dI~Re~y~~aEe~~  172 (492)
T TIGR02836        95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQ--EHSTIGVVVTTDGTITDIPREDYVEAEERV  172 (492)
T ss_pred             EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHH--hcCcEEEEEEcCCCccccccccchHHHHHH
Confidence            999999964311100        0000100           0111111  1388888888 875      3345556789


Q ss_pred             HHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHh
Q 024325          196 ISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI  263 (269)
Q Consensus       196 ~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~  263 (269)
                      ++.|+..++|+++|+||+|-..+. .......+.+.+      ..|++++||.+-. -+++...+.+.
T Consensus       173 i~eLk~~~kPfiivlN~~dp~~~e-t~~l~~~l~eky------~vpvl~v~c~~l~-~~DI~~il~~v  232 (492)
T TIGR02836       173 IEELKELNKPFIILLNSTHPYHPE-TEALRQELEEKY------DVPVLAMDVESMR-ESDILSVLEEV  232 (492)
T ss_pred             HHHHHhcCCCEEEEEECcCCCCch-hHHHHHHHHHHh------CCceEEEEHHHcC-HHHHHHHHHHH
Confidence            999999999999999999944332 222222332221      4788999996543 44444444443

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.54  E-value=2.4e-14  Score=126.12  Aligned_cols=158  Identities=20%  Similarity=0.238  Sum_probs=108.8

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCc-------------cccCCCCCceeEee-----EEE---eCCcEEEEcCCCCC
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGV-------------VRTSDKPGLTQTIN-----FFK---LGTKLCLVDLPGYG  149 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~-------------~~~s~~~gtt~~~~-----~~~---~~~~~~lvDtpG~~  149 (269)
                      ...+.+++-+-..|||||-.+|+.....             -......|.|-..+     +..   ..+.+.++||||+-
T Consensus         8 ~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHV   87 (603)
T COG0481           8 NIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV   87 (603)
T ss_pred             hccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCcc
Confidence            3457899999999999999998754210             01123445554433     222   13568899999985


Q ss_pred             CcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHH
Q 024325          150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE  229 (269)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~  229 (269)
                      +-             .-+..+.+..|...++|+|++.+...+...-.-..-.++..++.|+||+||..+ +.++..+.+.
T Consensus        88 DF-------------sYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~A-dpervk~eIe  153 (603)
T COG0481          88 DF-------------SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAA-DPERVKQEIE  153 (603)
T ss_pred             ce-------------EEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCC-CHHHHHHHHH
Confidence            42             111122233389999999999988777654444444568899999999999865 4556666666


Q ss_pred             HHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          230 ESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       230 ~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      +.+.-   .....+.+|||+|.|++++++.|.+.+.
T Consensus       154 ~~iGi---d~~dav~~SAKtG~gI~~iLe~Iv~~iP  186 (603)
T COG0481         154 DIIGI---DASDAVLVSAKTGIGIEDVLEAIVEKIP  186 (603)
T ss_pred             HHhCC---CcchheeEecccCCCHHHHHHHHHhhCC
Confidence            65532   2345799999999999999999998764

>PTZ00416 elongation factor 2; Provisional

Probab=99.54  E-value=1.6e-13  Score=133.60  Aligned_cols=111  Identities=15%  Similarity=0.245  Sum_probs=81.9

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCcee---------------Ee---eEEEe----------CCcEEEE
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ---------------TI---NFFKL----------GTKLCLV  143 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~---------------~~---~~~~~----------~~~~~lv  143 (269)
                      ..+|+++|+.++|||||+++|+.... .......|+++               +.   .+...          +..+.++
T Consensus        19 irni~iiGh~d~GKTTL~~~Ll~~~g-~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li   97 (836)
T PTZ00416         19 IRNMSVIAHVDHGKSTLTDSLVCKAG-IISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI   97 (836)
T ss_pred             cCEEEEECCCCCCHHHHHHHHHHhcC-CcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence            45899999999999999999987522 11122223322               11   11111          3458999


Q ss_pred             cCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCC
Q 024325          144 DLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  216 (269)
Q Consensus       144 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~  216 (269)
                      ||||+.             .+.......+..+|++++|+|+..++..++..++..+...++|+++++||+|+.
T Consensus        98 DtPG~~-------------~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         98 DSPGHV-------------DFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRA  157 (836)
T ss_pred             cCCCHH-------------hHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhh
Confidence            999973             233344555566999999999999999999999999988899999999999997

>smart00053 DYNc Dynamin, GTPase

Probab=99.54  E-value=5.7e-13  Score=111.10  Aligned_cols=80  Identities=18%  Similarity=0.246  Sum_probs=60.4

Q ss_pred             CcEEEEcCCCCCCcc--h-hHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHhhCCcEEEEEecC
Q 024325          138 TKLCLVDLPGYGFAY--A-KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERSQTKYQVVLTKT  213 (269)
Q Consensus       138 ~~~~lvDtpG~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~~~~p~iiv~NK~  213 (269)
                      +.+.++||||+....  . .......+..+...|+...  .+++++|+|+..++...+ .++.+.+...+.|+++|+||+
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~--~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~  202 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKE--ECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKL  202 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCc--cCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECC
Confidence            459999999996421  1 2334555667777776642  468999999987777776 588888888899999999999


Q ss_pred             CCCCch
Q 024325          214 DTVFPI  219 (269)
Q Consensus       214 Dl~~~~  219 (269)
                      |...+.
T Consensus       203 D~~~~~  208 (240)
T smart00053      203 DLMDEG  208 (240)
T ss_pred             CCCCcc
Confidence            998754

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=99.54  E-value=1.3e-13  Score=104.75  Aligned_cols=151  Identities=18%  Similarity=0.134  Sum_probs=96.5

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee----EEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN----FFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEEL  164 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~----~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~  164 (269)
                      .++|.++|.+|+|||||+-++... ...   +...+|-.+.    ...   ...++-+|||+|.          +.++.+
T Consensus        11 t~KiLlIGeSGVGKSSLllrFv~~-~fd---~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGq----------ErFRtL   76 (209)
T KOG0080|consen   11 TFKILLIGESGVGKSSLLLRFVSN-TFD---DLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQ----------ERFRTL   76 (209)
T ss_pred             eEEEEEEccCCccHHHHHHHHHhc-ccC---ccCCceeeeeEEEEEEEEcCceEEEEEEeccch----------Hhhhcc
Confidence            478999999999999999999876 222   2222332222    122   2456889999996          456677


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHhh----CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCC
Q 024325          165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS----QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLV  239 (269)
Q Consensus       165 ~~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~~----~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  239 (269)
                      ...|++.   +..+++|.|.....+... ..+++.+...    ++-.++|.||+|.-+...+.+. +-++ +.+.   ..
T Consensus        77 TpSyyRg---aqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~re-EG~k-fAr~---h~  148 (209)
T KOG0080|consen   77 TPSYYRG---AQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDRE-EGLK-FARK---HR  148 (209)
T ss_pred             CHhHhcc---CceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHH-HHHH-HHHh---hC
Confidence            7788877   889999999864322222 2333444332    3345789999996532222111 1111 1111   13


Q ss_pred             CCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325          240 QPVMMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       240 ~~vi~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      .-.+.+||++.+|+...|+.+...+
T Consensus       149 ~LFiE~SAkt~~~V~~~FeelveKI  173 (209)
T KOG0080|consen  149 CLFIECSAKTRENVQCCFEELVEKI  173 (209)
T ss_pred             cEEEEcchhhhccHHHHHHHHHHHH
Confidence            5578999999999999998887765

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.53  E-value=1.7e-13  Score=133.64  Aligned_cols=112  Identities=14%  Similarity=0.228  Sum_probs=82.5

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCcee---------------Ee---eEEE----------------e
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ---------------TI---NFFK----------------L  136 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~---------------~~---~~~~----------------~  136 (269)
                      ...+|+++|+.++|||||+++|+...+ .......|.++               +.   .+.+                .
T Consensus        18 ~Irni~iiGhvd~GKTTL~~~Ll~~~g-~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (843)
T PLN00116         18 NIRNMSVIAHVDHGKSTLTDSLVAAAG-IIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN   96 (843)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHHHhcC-CcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence            356899999999999999999986532 11112222222               11   1111                1


Q ss_pred             CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCC
Q 024325          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  216 (269)
Q Consensus       137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~  216 (269)
                      +..++++||||+             .++.......+..+|.+++|+|+..+...++..+++.+...++|+++++||+|+.
T Consensus        97 ~~~inliDtPGh-------------~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~  163 (843)
T PLN00116         97 EYLINLIDSPGH-------------VDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC  163 (843)
T ss_pred             ceEEEEECCCCH-------------HHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCccc
Confidence            456789999997             2334444455556999999999999999999999999988999999999999998

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.52  E-value=1.4e-13  Score=106.03  Aligned_cols=160  Identities=19%  Similarity=0.194  Sum_probs=104.8

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCc----CccccCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQW----GVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~----~~~~~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~  165 (269)
                      ..|+|+|.-|||||||+.++-...    ....++.+. +|...+..+   ....+.+||..|.      ...+..|..+.
T Consensus        18 y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~-~tvgLnig~i~v~~~~l~fwdlgGQ------e~lrSlw~~yY   90 (197)
T KOG0076|consen   18 YSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKIT-PTVGLNIGTIEVCNAPLSFWDLGGQ------ESLRSLWKKYY   90 (197)
T ss_pred             hhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHee-cccceeecceeeccceeEEEEcCCh------HHHHHHHHHHH
Confidence            479999999999999998865432    111122221 222222211   2567899999995      34455666554


Q ss_pred             HHHHhcccccceEEEEEeCCCC--CCcchHH---HHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCC
Q 024325          166 KEYVSTRVSLKRVCLLIDTKWG--VKPRDHE---LISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ  240 (269)
Q Consensus       166 ~~~~~~~~~~d~vl~vid~~~~--~~~~~~~---~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  240 (269)
                      ..       ++++++++|+.+.  +......   ++..=...+.|+++.+||-|+-+..+..+....+.. .........
T Consensus        91 ~~-------~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~-~e~~~~rd~  162 (197)
T KOG0076|consen   91 WL-------AHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGL-AELIPRRDN  162 (197)
T ss_pred             HH-------hceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhh-hhhcCCccC
Confidence            43       9999999999853  1111112   222222347999999999999877665554433332 233334567


Q ss_pred             CeEEeeCCCCCCHHHHHHHHHHhhhhh
Q 024325          241 PVMMVSSKSGAGIRSLRTVLSKIARFA  267 (269)
Q Consensus       241 ~vi~vSa~~g~gi~~L~~~i~~~~~~~  267 (269)
                      ++.||||.+|+|+++-..|+...+...
T Consensus       163 ~~~pvSal~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  163 PFQPVSALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             ccccchhhhcccHHHHHHHHHHHHhhc
Confidence            899999999999999999999887654

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.51  E-value=3.4e-13  Score=114.99  Aligned_cols=152  Identities=18%  Similarity=0.160  Sum_probs=108.3

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCc---------cccC----------------------CCCCceeEeeEE---Ee
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGV---------VRTS----------------------DKPGLTQTINFF---KL  136 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~---------~~~s----------------------~~~gtt~~~~~~---~~  136 (269)
                      ...+++.+|...-||||||-+|+.....         ...|                      ...|.|-|+-+.   +.
T Consensus         5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~   84 (431)
T COG2895           5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTE   84 (431)
T ss_pred             cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccc
Confidence            4568999999999999999998854210         0111                      234577777543   34


Q ss_pred             CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCC-cEEEEEecCCC
Q 024325          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT-KYQVVLTKTDT  215 (269)
Q Consensus       137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~-p~iiv~NK~Dl  215 (269)
                      ..+|.+.||||+             +++.+.+..+...||+.+++||+..++..+..+..-...-.++ .+++++||+||
T Consensus        85 KRkFIiADTPGH-------------eQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDL  151 (431)
T COG2895          85 KRKFIIADTPGH-------------EQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDL  151 (431)
T ss_pred             cceEEEecCCcH-------------HHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecc
Confidence            678999999997             4566677777888999999999999888877654444444455 48899999999


Q ss_pred             CCch--HHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHH
Q 024325          216 VFPI--DVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRS  255 (269)
Q Consensus       216 ~~~~--~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~  255 (269)
                      ++-.  ....+...+..+..........++|+||+.|.|+-.
T Consensus       152 vdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~  193 (431)
T COG2895         152 VDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS  193 (431)
T ss_pred             cccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence            9743  234444555555555544455789999999999853

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.51  E-value=2.3e-13  Score=116.45  Aligned_cols=141  Identities=23%  Similarity=0.396  Sum_probs=88.6

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccC-CCCC------ceeEeeE----EE---eCCcEEEEcCCCCCCcchhH---
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTS-DKPG------LTQTINF----FK---LGTKLCLVDLPGYGFAYAKE---  155 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s-~~~g------tt~~~~~----~~---~~~~~~lvDtpG~~~~~~~~---  155 (269)
                      ++|+++|.+|+|||||||.|++.. ..... ..+.      .+..+..    ..   ....+.++||||+++.....   
T Consensus         5 fnImVvG~sG~GKTTFIntL~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~   83 (281)
T PF00735_consen    5 FNIMVVGESGLGKTTFINTLFNSD-IISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW   83 (281)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTSS----------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHhcc-cccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence            589999999999999999999973 22221 1111      1111111    11   13458899999999764322   


Q ss_pred             -HHHHHHHHHHHHHHhcc----------cccceEEEEEeCC-CCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHH
Q 024325          156 -EVKDAWEELVKEYVSTR----------VSLKRVCLLIDTK-WGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVAR  223 (269)
Q Consensus       156 -~~~~~~~~~~~~~~~~~----------~~~d~vl~vid~~-~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~  223 (269)
                       .+......-...|+...          ..+|+++|++++. +++.+.|.+.++.|.. .+++|.|+.|+|.+.+.++..
T Consensus        84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~-~vNvIPvIaKaD~lt~~el~~  162 (281)
T PF00735_consen   84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSK-RVNVIPVIAKADTLTPEELQA  162 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTT-TSEEEEEESTGGGS-HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhcc-cccEEeEEecccccCHHHHHH
Confidence             22222121112222210          1278899999975 5788889888888875 489999999999999999988


Q ss_pred             HHHHHHHHHHhc
Q 024325          224 RAMQIEESLKAN  235 (269)
Q Consensus       224 ~~~~~~~~~~~~  235 (269)
                      ..+.+.+.+...
T Consensus       163 ~k~~i~~~l~~~  174 (281)
T PF00735_consen  163 FKQRIREDLEEN  174 (281)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHc
Confidence            888888877765

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.51  E-value=2.2e-13  Score=117.88  Aligned_cols=86  Identities=24%  Similarity=0.301  Sum_probs=68.1

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe---------------------CCcEEEEcCCCCCC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---------------------GTKLCLVDLPGYGF  150 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~---------------------~~~~~lvDtpG~~~  150 (269)
                      .++++|||.||+|||||+|+++.. . +...++|+||-+.+....                     ...+.|+|.+|+-.
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~-~-a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~   79 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKA-G-AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVK   79 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcC-C-ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCC
Confidence            357999999999999999999998 4 788999999988653211                     23488999999865


Q ss_pred             cchhHHHHHHHHHHHHHHHhcccccceEEEEEeCC
Q 024325          151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK  185 (269)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~  185 (269)
                      ..+..      +.+-+.|+.....+|++++|+|+.
T Consensus        80 GAs~G------eGLGNkFL~~IRevdaI~hVVr~f  108 (372)
T COG0012          80 GASKG------EGLGNKFLDNIREVDAIIHVVRCF  108 (372)
T ss_pred             CcccC------CCcchHHHHhhhhcCeEEEEEEec
Confidence            53322      345677888888899999999986

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.51  E-value=3.2e-13  Score=109.68  Aligned_cols=152  Identities=14%  Similarity=0.069  Sum_probs=100.9

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE-----EEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF-----FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~-----~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      .+|+++|.+|+|||+|...+.+.   .++..+.+|..|...     ......+.++||+|..+          +..+...
T Consensus         4 ~kvvvlG~~gVGKSal~~qf~~~---~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~----------~~~~~~~   70 (196)
T KOG0395|consen    4 YKVVVLGAGGVGKSALTIQFLTG---RFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEE----------FSAMRDL   70 (196)
T ss_pred             eEEEEECCCCCCcchheeeeccc---ccccccCCCccccceEEEEECCEEEEEEEEcCCCccc----------ChHHHHH
Confidence            58999999999999999998887   356666666665321     11234577999999432          2344445


Q ss_pred             HHhcccccceEEEEEeCCCCCCcch-HHHHHHH----HhhCCcEEEEEecCCCCCchHHHHH-HHHHHHHHHhcCCCCCC
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLM----ERSQTKYQVVLTKTDTVFPIDVARR-AMQIEESLKANNSLVQP  241 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l----~~~~~p~iiv~NK~Dl~~~~~~~~~-~~~~~~~~~~~~~~~~~  241 (269)
                      |+..   .+..++|++..+..+... ..+.+.+    ....+|+++|.||+|+......... -+.+   .   ..+..+
T Consensus        71 ~~~~---~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~l---a---~~~~~~  141 (196)
T KOG0395|consen   71 YIRN---GDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKAL---A---RSWGCA  141 (196)
T ss_pred             hhcc---CcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHH---H---HhcCCc
Confidence            5554   788888888765333222 2333334    2235799999999999763222111 1122   1   123567


Q ss_pred             eEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325          242 VMMVSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       242 vi~vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      ++.+||+...+++++|..|.+.++.
T Consensus       142 f~E~Sak~~~~v~~~F~~L~r~~~~  166 (196)
T KOG0395|consen  142 FIETSAKLNYNVDEVFYELVREIRL  166 (196)
T ss_pred             EEEeeccCCcCHHHHHHHHHHHHHh
Confidence            9999999999999999999887654

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.50  E-value=5.1e-13  Score=106.51  Aligned_cols=158  Identities=16%  Similarity=0.222  Sum_probs=95.1

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeE-eeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHh
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~-~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~  170 (269)
                      .+.|.++|..++|||+|+-.|....   ....++..... ..+......+.+||.||+..          .+.-...|+.
T Consensus        38 ~~~Vll~Gl~dSGKT~LF~qL~~gs---~~~TvtSiepn~a~~r~gs~~~~LVD~PGH~r----------lR~kl~e~~~  104 (238)
T KOG0090|consen   38 QNAVLLVGLSDSGKTSLFTQLITGS---HRGTVTSIEPNEATYRLGSENVTLVDLPGHSR----------LRRKLLEYLK  104 (238)
T ss_pred             CCcEEEEecCCCCceeeeeehhcCC---ccCeeeeeccceeeEeecCcceEEEeCCCcHH----------HHHHHHHHcc
Confidence            3689999999999999998877652   11111111111 12333345579999999722          1222334444


Q ss_pred             cccccceEEEEEeCCCCCCcchH----HHHHHHH-----hhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhc------
Q 024325          171 TRVSLKRVCLLIDTKWGVKPRDH----ELISLME-----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN------  235 (269)
Q Consensus       171 ~~~~~d~vl~vid~~~~~~~~~~----~~~~~l~-----~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~------  235 (269)
                      +...+.+++||+|+.. +...-.    .+.+.+.     ....|++++.||.|+..+...+.+.+.++..+...      
T Consensus       105 ~~~~akaiVFVVDSa~-f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa  183 (238)
T KOG0090|consen  105 HNYSAKAIVFVVDSAT-FLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSA  183 (238)
T ss_pred             ccccceeEEEEEeccc-cchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhh
Confidence            4456899999999873 233222    2233332     24578999999999987644433333333222110      


Q ss_pred             ---------------------------CCCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325          236 ---------------------------NSLVQPVMMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       236 ---------------------------~~~~~~vi~vSa~~g~gi~~L~~~i~~~~  264 (269)
                                                 ......+.+.|+++| +++++.+||.+.+
T Consensus       184 ~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l  238 (238)
T KOG0090|consen  184 LRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL  238 (238)
T ss_pred             hhccccccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence                                       001223567888888 8999999998753

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.50  E-value=1.1e-13  Score=109.73  Aligned_cols=109  Identities=24%  Similarity=0.390  Sum_probs=70.5

Q ss_pred             EEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE---------------------------------------
Q 024325           95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---------------------------------------  135 (269)
Q Consensus        95 v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~---------------------------------------  135 (269)
                      |+++|..++|||||+|+|+|. .+..++..|.|..-+.+..                                       
T Consensus         1 V~v~G~~ssGKSTliNaLlG~-~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (168)
T PF00350_consen    1 VAVVGQFSSGKSTLINALLGR-PILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSI   79 (168)
T ss_dssp             EEEEEBTTSSHHHHHHHHHTS-S-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHH
T ss_pred             CEEEcCCCCCHHHHHHHHHhc-ccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhcccccc
Confidence            789999999999999999998 5555544443322111000                                       


Q ss_pred             -------------------eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHH
Q 024325          136 -------------------LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELI  196 (269)
Q Consensus       136 -------------------~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~  196 (269)
                                         ....+.|+||||+.+....+      ..+...|+   ..+|++++|+++...+...+...+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~------~~~~~~~~---~~~d~vi~V~~~~~~~~~~~~~~l  150 (168)
T PF00350_consen   80 EGKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEH------TEITEEYL---PKADVVIFVVDANQDLTESDMEFL  150 (168)
T ss_dssp             HTSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTT------SHHHHHHH---STTEEEEEEEETTSTGGGHHHHHH
T ss_pred             cccccccccceeEEeeccccccceEEEeCCccccchhhh------HHHHHHhh---ccCCEEEEEeccCcccchHHHHHH
Confidence                               01238999999996642222      13444554   349999999999876666655544


Q ss_pred             HH-HHhhCCcEEEEEecC
Q 024325          197 SL-MERSQTKYQVVLTKT  213 (269)
Q Consensus       197 ~~-l~~~~~p~iiv~NK~  213 (269)
                      .. .......+++|+||+
T Consensus       151 ~~~~~~~~~~~i~V~nk~  168 (168)
T PF00350_consen  151 KQMLDPDKSRTIFVLNKA  168 (168)
T ss_dssp             HHHHTTTCSSEEEEEE-G
T ss_pred             HHHhcCCCCeEEEEEcCC
Confidence            43 444556799999995

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.50  E-value=8.3e-14  Score=110.75  Aligned_cols=124  Identities=19%  Similarity=0.282  Sum_probs=65.5

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      .+.|+++|+.|+|||+|+..|........++..   .....+..   .+..+.+||+||+..-  +       ..+... 
T Consensus         3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~---e~n~~~~~~~~~~~~~~lvD~PGH~rl--r-------~~~~~~-   69 (181)
T PF09439_consen    3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM---ENNIAYNVNNSKGKKLRLVDIPGHPRL--R-------SKLLDE-   69 (181)
T ss_dssp             --EEEEE-STTSSHHHHHHHHHHSS---B---S---SEEEECCGSSTCGTCECEEEETT-HCC--C-------HHHHHH-
T ss_pred             CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc---cCCceEEeecCCCCEEEEEECCCcHHH--H-------HHHHHh-
Confidence            368999999999999999999987321111111   11111111   3567999999997432  1       111111 


Q ss_pred             HhcccccceEEEEEeCCCCCCcch----HHHHHHHH-----hhCCcEEEEEecCCCCCchHHHHHHHHHH
Q 024325          169 VSTRVSLKRVCLLIDTKWGVKPRD----HELISLME-----RSQTKYQVVLTKTDTVFPIDVARRAMQIE  229 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~~~~~~~----~~~~~~l~-----~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~  229 (269)
                      +.....+..|+||+|++. ....-    ..+.+.+.     ...+|+++++||.|+..+.....+...++
T Consensus        70 ~~~~~~~k~IIfvvDSs~-~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~~LE  138 (181)
T PF09439_consen   70 LKYLSNAKGIIFVVDSST-DQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKKLLE  138 (181)
T ss_dssp             HHHHGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHHHHH
T ss_pred             hhchhhCCEEEEEEeCcc-chhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHHHHH
Confidence            112444899999999873 11111    22223222     24689999999999987544433333333

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.49  E-value=3.7e-13  Score=129.72  Aligned_cols=111  Identities=17%  Similarity=0.272  Sum_probs=77.7

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCC---------------CceeEe---eEEE----eCCcEEEEcCCCCC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP---------------GLTQTI---NFFK----LGTKLCLVDLPGYG  149 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~---------------gtt~~~---~~~~----~~~~~~lvDtpG~~  149 (269)
                      ..+|+++|+.++|||||+.+|+...+. ......               |+|.+.   .+.+    .+..+.|+||||+.
T Consensus        20 iRni~iigh~d~GKTTL~e~ll~~~g~-i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~   98 (731)
T PRK07560         20 IRNIGIIAHIDHGKTTLSDNLLAGAGM-ISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV   98 (731)
T ss_pred             ccEEEEEEeCCCCHHHHHHHHHHHcCC-cchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence            458999999999999999999864211 111111               122221   1111    25568999999984


Q ss_pred             CcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCC
Q 024325          150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  216 (269)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~  216 (269)
                      +             +.......+..+|.+++|+|+..+...++..++..+...+.|.++++||+|+.
T Consensus        99 d-------------f~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~  152 (731)
T PRK07560         99 D-------------FGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRL  152 (731)
T ss_pred             C-------------hHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhh
Confidence            3             11222333344999999999999888888888888777788999999999986

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.48  E-value=7.2e-13  Score=99.34  Aligned_cols=152  Identities=18%  Similarity=0.171  Sum_probs=98.6

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCc-eeEe----eEEE-eCCcEEEEcCCCCCCcchhHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL-TQTI----NFFK-LGTKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gt-t~~~----~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~  165 (269)
                      ..++.++|...+|||||+-+.++.   .+.+.+..| .-+.    .+.. ...++.+|||+|.          +.+..+.
T Consensus        21 mfKlliiGnssvGKTSfl~ry~dd---SFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagq----------EryrtiT   87 (193)
T KOG0093|consen   21 MFKLLIIGNSSVGKTSFLFRYADD---SFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQ----------ERYRTIT   87 (193)
T ss_pred             eeeEEEEccCCccchhhhHHhhcc---ccccceeeeeeeeEEEeEeeecccEEEEEEEecccc----------hhhhHHH
Confidence            358999999999999999998886   233332211 1111    1111 1457899999996          2345566


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcc-hHHHHHHHHh---hCCcEEEEEecCCCCCchHHHH-HHHHHHHHHHhcCCCCC
Q 024325          166 KEYVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER---SQTKYQVVLTKTDTVFPIDVAR-RAMQIEESLKANNSLVQ  240 (269)
Q Consensus       166 ~~~~~~~~~~d~vl~vid~~~~~~~~-~~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~  240 (269)
                      -.|++.   ++.++++.|..+..... -..+...+..   .+.|+|+|.||||+-+...+.. ....+.+.+      +.
T Consensus        88 TayyRg---amgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~L------Gf  158 (193)
T KOG0093|consen   88 TAYYRG---AMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQL------GF  158 (193)
T ss_pred             HHHhhc---cceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHh------Ch
Confidence            666665   89999999987522111 1223333322   4789999999999976432211 112222222      46


Q ss_pred             CeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          241 PVMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       241 ~vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      ..|++|||.+.|+.++++.+.+.+.
T Consensus       159 efFEtSaK~NinVk~~Fe~lv~~Ic  183 (193)
T KOG0093|consen  159 EFFETSAKENINVKQVFERLVDIIC  183 (193)
T ss_pred             HHhhhcccccccHHHHHHHHHHHHH
Confidence            7899999999999999998887654

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=99.48  E-value=3.8e-14  Score=117.33  Aligned_cols=150  Identities=21%  Similarity=0.329  Sum_probs=88.8

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCc-----Ccc-----ccCCCCC------------ceeEee-EEE-------------
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQW-----GVV-----RTSDKPG------------LTQTIN-FFK-------------  135 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~-----~~~-----~~s~~~g------------tt~~~~-~~~-------------  135 (269)
                      .++|+|.|+||+|||||+++|....     +++     +.|+..|            ...|.. |..             
T Consensus        29 a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls~  108 (266)
T PF03308_consen   29 AHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLSR  108 (266)
T ss_dssp             SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHHH
T ss_pred             ceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCccH
Confidence            4689999999999999999987532     111     1222222            011111 111             


Q ss_pred             -----------eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcc--hHHHHHHHHhh
Q 024325          136 -----------LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPR--DHELISLMERS  202 (269)
Q Consensus       136 -----------~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~--~~~~~~~l~~~  202 (269)
                                 .|+.++|+.|.|.+.+.         -++..       -+|.+++|+-+..+...+  ..-+++     
T Consensus       109 ~t~~~v~ll~aaG~D~IiiETVGvGQsE---------~~I~~-------~aD~~v~v~~Pg~GD~iQ~~KaGimE-----  167 (266)
T PF03308_consen  109 ATRDAVRLLDAAGFDVIIIETVGVGQSE---------VDIAD-------MADTVVLVLVPGLGDEIQAIKAGIME-----  167 (266)
T ss_dssp             HHHHHHHHHHHTT-SEEEEEEESSSTHH---------HHHHT-------TSSEEEEEEESSTCCCCCTB-TTHHH-----
T ss_pred             hHHHHHHHHHHcCCCEEEEeCCCCCccH---------HHHHH-------hcCeEEEEecCCCccHHHHHhhhhhh-----
Confidence                       15669999999987531         11111       289999998776543333  333433     


Q ss_pred             CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhc----CCCCCCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325          203 QTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN----NSLVQPVMMVSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       203 ~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~----~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                       +.-++|+||+|+...   ......++..+...    ..+.+|++.+||.+|.|+++|.+.|.+...+
T Consensus       168 -iaDi~vVNKaD~~gA---~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~  231 (266)
T PF03308_consen  168 -IADIFVVNKADRPGA---DRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDY  231 (266)
T ss_dssp             -H-SEEEEE--SHHHH---HHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred             -hccEEEEeCCChHHH---HHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence             356899999995433   33344444444432    2345799999999999999999999887654

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.48  E-value=4.2e-13  Score=110.36  Aligned_cols=59  Identities=19%  Similarity=0.253  Sum_probs=42.1

Q ss_pred             hhCCcEEEEEecCCCCCch--HHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325          201 RSQTKYQVVLTKTDTVFPI--DVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       201 ~~~~p~iiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      ....|.++++||+|+.+..  ......+.+++    .. ...|++++||++|.|+++++++|.+..
T Consensus       146 ~~~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~----~~-~~~~i~~~Sa~~g~gv~~l~~~i~~~~  206 (207)
T TIGR00073       146 MFKEADLIVINKADLAEAVGFDVEKMKADAKK----IN-PEAEIILMSLKTGEGLDEWLEFLEGQV  206 (207)
T ss_pred             HHhhCCEEEEEHHHccccchhhHHHHHHHHHH----hC-CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            3457889999999998642  22233333322    21 247899999999999999999998754

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.48  E-value=2.2e-12  Score=111.94  Aligned_cols=109  Identities=17%  Similarity=0.186  Sum_probs=65.4

Q ss_pred             CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCC
Q 024325          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  216 (269)
Q Consensus       137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~  216 (269)
                      ++.+.|+||||.+...         .....       .+|.++++.++..   ..+.+.+.. .-..+|.++|+||+|+.
T Consensus       126 g~D~viidT~G~~~~e---------~~i~~-------~aD~i~vv~~~~~---~~el~~~~~-~l~~~~~ivv~NK~Dl~  185 (300)
T TIGR00750       126 GYDVIIVETVGVGQSE---------VDIAN-------MADTFVVVTIPGT---GDDLQGIKA-GLMEIADIYVVNKADGE  185 (300)
T ss_pred             CCCEEEEeCCCCchhh---------hHHHH-------hhceEEEEecCCc---cHHHHHHHH-HHhhhccEEEEEccccc
Confidence            5679999999986421         01111       2788887765431   122221111 11368899999999998


Q ss_pred             CchHHHHHHHHHHHHHH----hcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          217 FPIDVARRAMQIEESLK----ANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       217 ~~~~~~~~~~~~~~~~~----~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      ...........+...+.    ....+..+++++||++|+|+++|+++|.+...
T Consensus       186 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       186 GATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             chhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence            65432221111111111    11123457999999999999999999988654

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.47  E-value=2.2e-12  Score=97.31  Aligned_cols=150  Identities=14%  Similarity=0.097  Sum_probs=94.5

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      .++++++|+.|+|||.|+..+....--..++...|+.-.......   ..++.+|||+|.          +.+....+.|
T Consensus         9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQ----------ErFRSVtRsY   78 (214)
T KOG0086|consen    9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQ----------ERFRSVTRSY   78 (214)
T ss_pred             hheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccH----------HHHHHHHHHH
Confidence            468999999999999999998876321223333222211122222   346899999995          5667777888


Q ss_pred             HhcccccceEEEEEeCCCCCCcchHHHHHHHHh------hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325          169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMER------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  242 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~------~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  242 (269)
                      ++.   +...++|.|......  -..+-.|+..      .++-++++.||.||-...++.-...  .++.+   ....-.
T Consensus        79 YRG---AAGAlLVYD~Tsrds--fnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEA--s~Faq---Enel~f  148 (214)
T KOG0086|consen   79 YRG---AAGALLVYDITSRDS--FNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEA--SRFAQ---ENELMF  148 (214)
T ss_pred             hcc---ccceEEEEeccchhh--HHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHH--Hhhhc---ccceee
Confidence            887   677888998764221  1234444433      2345788999999976544432111  11111   112456


Q ss_pred             EEeeCCCCCCHHHHHHHHH
Q 024325          243 MMVSSKSGAGIRSLRTVLS  261 (269)
Q Consensus       243 i~vSa~~g~gi~~L~~~i~  261 (269)
                      ..+||++|+|+++.|-...
T Consensus       149 lETSa~TGeNVEEaFl~c~  167 (214)
T KOG0086|consen  149 LETSALTGENVEEAFLKCA  167 (214)
T ss_pred             eeecccccccHHHHHHHHH
Confidence            8899999999999875443

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=99.47  E-value=2e-12  Score=108.58  Aligned_cols=156  Identities=22%  Similarity=0.263  Sum_probs=94.7

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCc-----Cccc-----cCCCCC------------ceeEeeEE-E-------------
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQW-----GVVR-----TSDKPG------------LTQTINFF-K-------------  135 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~-----~~~~-----~s~~~g------------tt~~~~~~-~-------------  135 (269)
                      ..+|+|.|.||+|||||+..|....     +++.     .|++.|            .+.+...| .             
T Consensus        51 a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS~  130 (323)
T COG1703          51 AHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLSR  130 (323)
T ss_pred             CcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhhH
Confidence            3589999999999999999876431     1111     122222            11111111 1             


Q ss_pred             -----------eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCC
Q 024325          136 -----------LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT  204 (269)
Q Consensus       136 -----------~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~  204 (269)
                                 .|+.+.+|.|.|.+.+.         ..+...       +|.+++|.-+..+..   .+.++ ..-..+
T Consensus       131 at~~~i~~ldAaG~DvIIVETVGvGQse---------v~I~~~-------aDt~~~v~~pg~GD~---~Q~iK-~GimEi  190 (323)
T COG1703         131 ATREAIKLLDAAGYDVIIVETVGVGQSE---------VDIANM-------ADTFLVVMIPGAGDD---LQGIK-AGIMEI  190 (323)
T ss_pred             HHHHHHHHHHhcCCCEEEEEecCCCcch---------hHHhhh-------cceEEEEecCCCCcH---HHHHH-hhhhhh
Confidence                       14569999999987641         122222       888888886653322   22211 011234


Q ss_pred             cEEEEEecCCCCCchHHHHHHHHHHHHH---HhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhhhh
Q 024325          205 KYQVVLTKTDTVFPIDVARRAMQIEESL---KANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFA  267 (269)
Q Consensus       205 p~iiv~NK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~~~  267 (269)
                      .-++|+||.|+..............+..   .....+.+|++.+||.+|+|+++|++.|.+..++.
T Consensus       191 aDi~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~  256 (323)
T COG1703         191 ADIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFL  256 (323)
T ss_pred             hheeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHH
Confidence            5689999999655433333222222222   22345678999999999999999999999987654

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.45  E-value=2.1e-12  Score=113.76  Aligned_cols=160  Identities=23%  Similarity=0.288  Sum_probs=109.3

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccc----------cCC----CCCce---eEeeEEEeCCcEEEEcCCCCCCcchh
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVR----------TSD----KPGLT---QTINFFKLGTKLCLVDLPGYGFAYAK  154 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~----------~s~----~~gtt---~~~~~~~~~~~~~lvDtpG~~~~~~~  154 (269)
                      ..+|+|+-+...|||||+..|+.......          -|+    ..|.|   ..+...+.+..++++||||+.+--. 
T Consensus         5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG-   83 (603)
T COG1217           5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG-   83 (603)
T ss_pred             cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc-
Confidence            45899999999999999999987632111          111    12222   1123344578899999999854211 


Q ss_pred             HHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHh
Q 024325          155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA  234 (269)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~  234 (269)
                       +        ++..++   -+|.+++++|+.++..++...+++..-..+.+.|+|+||+|...+. -........+.+-.
T Consensus        84 -E--------VERvl~---MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Ar-p~~Vvd~vfDLf~~  150 (603)
T COG1217          84 -E--------VERVLS---MVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDAR-PDEVVDEVFDLFVE  150 (603)
T ss_pred             -h--------hhhhhh---hcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCCC-HHHHHHHHHHHHHH
Confidence             1        111111   1899999999999999999888888878899999999999998642 22222333333322


Q ss_pred             c----CCCCCCeEEeeCCCCC----------CHHHHHHHHHHhhh
Q 024325          235 N----NSLVQPVMMVSSKSGA----------GIRSLRTVLSKIAR  265 (269)
Q Consensus       235 ~----~~~~~~vi~vSa~~g~----------gi~~L~~~i~~~~~  265 (269)
                      .    .....|++..|++.|+          ++.-||+.|.+.+.
T Consensus       151 L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp  195 (603)
T COG1217         151 LGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVP  195 (603)
T ss_pred             hCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCC
Confidence            2    2346899999999874          68889999888764

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=99.45  E-value=1.6e-12  Score=99.14  Aligned_cols=152  Identities=21%  Similarity=0.211  Sum_probs=97.5

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee----EEEe--CCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN----FFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~----~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      +++.++|.+-+|||||+..++.. +.+..++ |.+..|.-    ....  ..++.+|||+|.          +.+..+.+
T Consensus         9 frlivigdstvgkssll~~ft~g-kfaelsd-ptvgvdffarlie~~pg~riklqlwdtagq----------erfrsitk   76 (213)
T KOG0091|consen    9 FRLIVIGDSTVGKSSLLRYFTEG-KFAELSD-PTVGVDFFARLIELRPGYRIKLQLWDTAGQ----------ERFRSITK   76 (213)
T ss_pred             EEEEEEcCCcccHHHHHHHHhcC-cccccCC-CccchHHHHHHHhcCCCcEEEEEEeeccch----------HHHHHHHH
Confidence            57899999999999999999987 4444442 32222320    1111  346889999995          56678888


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh-hC----CcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCC
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-SQ----TKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ  240 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~-~~----~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  240 (269)
                      .|++.   +-.+++|.|..+...... ..++..... ..    +-+.+|..|+|+.+..++....  .+.....   .+.
T Consensus        77 syyrn---svgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EE--aEklAa~---hgM  148 (213)
T KOG0091|consen   77 SYYRN---SVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEE--AEKLAAS---HGM  148 (213)
T ss_pred             HHhhc---ccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHH--HHHHHHh---cCc
Confidence            88776   778899999875332221 122222211 11    2257899999998654332221  1111111   146


Q ss_pred             CeEEeeCCCCCCHHHHHHHHHHhh
Q 024325          241 PVMMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       241 ~vi~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      ..+.+||++|.|+++.++.|.+.+
T Consensus       149 ~FVETSak~g~NVeEAF~mlaqeI  172 (213)
T KOG0091|consen  149 AFVETSAKNGCNVEEAFDMLAQEI  172 (213)
T ss_pred             eEEEecccCCCcHHHHHHHHHHHH
Confidence            789999999999999998887654

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.44  E-value=3.4e-13  Score=100.73  Aligned_cols=107  Identities=19%  Similarity=0.212  Sum_probs=62.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCcc---ccCCCCCceeEeeEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVV---RTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~---~~s~~~gtt~~~~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      +|+++|.+|+|||||+++|++.. ..   ......+.+........   ...+.+||++|......      .+..+.  
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~------~~~~~~--   71 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGE-FPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYS------QHQFFL--   71 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS---------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHC------TSHHHH--
T ss_pred             CEEEECcCCCCHHHHHHHHhcCC-CcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecc------cccchh--
Confidence            58999999999999999999873 22   11222222222222111   23488999999732111      001111  


Q ss_pred             HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh-----hCCcEEEEEecCC
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-----SQTKYQVVLTKTD  214 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~-----~~~p~iiv~NK~D  214 (269)
                           ..+|++++|+|.++..+... .+++.++..     .++|+++|.||.|
T Consensus        72 -----~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D  119 (119)
T PF08477_consen   72 -----KKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD  119 (119)
T ss_dssp             -----HHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred             -----hcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence                 22999999999875322222 233334433     2589999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PLN00023 GTP-binding protein; Provisional

Probab=99.44  E-value=1.7e-12  Score=111.78  Aligned_cols=119  Identities=18%  Similarity=0.223  Sum_probs=73.5

Q ss_pred             CCCCCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe----------------CCcEEEEcCCCCCC
Q 024325           87 FPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----------------GTKLCLVDLPGYGF  150 (269)
Q Consensus        87 ~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~----------------~~~~~lvDtpG~~~  150 (269)
                      .+.....+|+++|..|+|||||++++++........+..|.+........                ...+.||||+|.. 
T Consensus        16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE-   94 (334)
T PLN00023         16 GPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE-   94 (334)
T ss_pred             CCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh-
Confidence            34445579999999999999999999986311111222222222111111                1348899999962 


Q ss_pred             cchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHhh---------------CCcEEEEEecCC
Q 024325          151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---------------QTKYQVVLTKTD  214 (269)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~~---------------~~p~iiv~NK~D  214 (269)
                               .+..+...|+..   ++++++|+|.+....... ..+++.+...               .+|+++|.||+|
T Consensus        95 ---------rfrsL~~~yyr~---AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~D  162 (334)
T PLN00023         95 ---------RYKDCRSLFYSQ---INGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKAD  162 (334)
T ss_pred             ---------hhhhhhHHhccC---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcc
Confidence                     223444445443   999999999875322222 2344444432               378999999999


Q ss_pred             CCCc
Q 024325          215 TVFP  218 (269)
Q Consensus       215 l~~~  218 (269)
                      +...
T Consensus       163 L~~~  166 (334)
T PLN00023        163 IAPK  166 (334)
T ss_pred             cccc
Confidence            9653

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.44  E-value=1.6e-12  Score=96.77  Aligned_cols=155  Identities=15%  Similarity=0.199  Sum_probs=102.7

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee-EEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST  171 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~-~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~  171 (269)
                      .+|+++|-.++||||++..|.-.   ..+..+|.+.-.+. ..+.+..+.+||..|.      +.++..|...    +..
T Consensus        18 ~~ilmlGLd~aGKTtiLyKLkl~---~~~~~ipTvGFnvetVtykN~kfNvwdvGGq------d~iRplWrhY----y~g   84 (180)
T KOG0071|consen   18 MRILMLGLDAAGKTTILYKLKLG---QSVTTIPTVGFNVETVTYKNVKFNVWDVGGQ------DKIRPLWRHY----YTG   84 (180)
T ss_pred             ceEEEEecccCCceehhhHHhcC---CCcccccccceeEEEEEeeeeEEeeeeccCc------hhhhHHHHhh----ccC
Confidence            57999999999999999999876   22333333332332 2234677999999994      5566676543    333


Q ss_pred             ccccceEEEEEeCCCCCC--cchHHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEee
Q 024325          172 RVSLKRVCLLIDTKWGVK--PRDHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS  246 (269)
Q Consensus       172 ~~~~d~vl~vid~~~~~~--~~~~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vS  246 (269)
                         ...++||+|++..-.  ....++...+..   ...++++..||-|+..+....++...+.  +........-+.+.|
T Consensus        85 ---tqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~le--Le~~r~~~W~vqp~~  159 (180)
T KOG0071|consen   85 ---TQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLE--LERIRDRNWYVQPSC  159 (180)
T ss_pred             ---CceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhc--cccccCCccEeeccc
Confidence               789999999875411  112234343332   3578999999999987655444333322  111223356688999


Q ss_pred             CCCCCCHHHHHHHHHHhhh
Q 024325          247 SKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       247 a~~g~gi~~L~~~i~~~~~  265 (269)
                      |.+|.|+.+-+.||...+.
T Consensus       160 a~~gdgL~eglswlsnn~~  178 (180)
T KOG0071|consen  160 ALSGDGLKEGLSWLSNNLK  178 (180)
T ss_pred             cccchhHHHHHHHHHhhcc
Confidence            9999999999999987653

>cd01900 YchF YchF subfamily

Probab=99.43  E-value=3.3e-13  Score=114.69  Aligned_cols=83  Identities=27%  Similarity=0.351  Sum_probs=63.3

Q ss_pred             EEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe---C-----------------CcEEEEcCCCCCCcchh
Q 024325           95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---G-----------------TKLCLVDLPGYGFAYAK  154 (269)
Q Consensus        95 v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~---~-----------------~~~~lvDtpG~~~~~~~  154 (269)
                      |+++|.||+|||||+|+|++. . ..++++|+||.+.+....   +                 ..+.++||||+....+.
T Consensus         1 igivG~PN~GKSTLfn~Lt~~-~-~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~   78 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKA-G-AEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   78 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCC-C-CccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch
Confidence            589999999999999999998 4 488999999988653221   1                 14899999999765332


Q ss_pred             HHHHHHHHHHHHHHHhcccccceEEEEEeCC
Q 024325          155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTK  185 (269)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~  185 (269)
                      .      ..+...|+.....+|++++|+|+.
T Consensus        79 ~------~glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          79 G------EGLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             h------hHHHHHHHHHHHhCCEEEEEEeCc
Confidence            1      234456666666799999999975

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.43  E-value=6.4e-12  Score=108.21  Aligned_cols=147  Identities=24%  Similarity=0.342  Sum_probs=101.2

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccC---CCCC----ceeEeeEEE-----e--CCcEEEEcCCCCCCcc----h
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTS---DKPG----LTQTINFFK-----L--GTKLCLVDLPGYGFAY----A  153 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s---~~~g----tt~~~~~~~-----~--~~~~~lvDtpG~~~~~----~  153 (269)
                      .+.|+++|+.|.||||++|.|++.. +....   +..+    .|..+....     .  ...++++||||+|+..    .
T Consensus        23 ~f~im~~G~sG~GKttfiNtL~~~~-l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~  101 (373)
T COG5019          23 DFTIMVVGESGLGKTTFINTLFGTS-LVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC  101 (373)
T ss_pred             ceEEEEecCCCCchhHHHHhhhHhh-ccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence            4789999999999999999999872 11110   1111    222222211     1  2358899999999863    3


Q ss_pred             hHHHHHHHHHHHHHHHhcc-----------cccceEEEEEeC-CCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHH
Q 024325          154 KEEVKDAWEELVKEYVSTR-----------VSLKRVCLLIDT-KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDV  221 (269)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~-----------~~~d~vl~vid~-~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~  221 (269)
                      ++.+.+...+....|+..-           .-+|+++|.+.+ .+++.+.|.++++.+.. .+++|.|+.|+|.....++
T Consensus       102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~-~vNlIPVI~KaD~lT~~El  180 (373)
T COG5019         102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSK-RVNLIPVIAKADTLTDDEL  180 (373)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhc-ccCeeeeeeccccCCHHHH
Confidence            4445444444444554421           127889988875 46889999999888875 5889999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCCeE
Q 024325          222 ARRAMQIEESLKANNSLVQPVM  243 (269)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~vi  243 (269)
                      ....+.+.+.+..+   ..++|
T Consensus       181 ~~~K~~I~~~i~~~---nI~vf  199 (373)
T COG5019         181 AEFKERIREDLEQY---NIPVF  199 (373)
T ss_pred             HHHHHHHHHHHHHh---CCcee
Confidence            88888888777654   35555

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.42  E-value=5e-13  Score=99.52  Aligned_cols=158  Identities=16%  Similarity=0.199  Sum_probs=110.0

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhc
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST  171 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~  171 (269)
                      -+++.++|--|+||||++..|.++ ++..+.+..|.......+.....+++||..|...      ++..|..+.+.    
T Consensus        17 EirilllGldnAGKTT~LKqL~sE-D~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~------IRpyWsNYyen----   85 (185)
T KOG0074|consen   17 EIRILLLGLDNAGKTTFLKQLKSE-DPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRG------IRPYWSNYYEN----   85 (185)
T ss_pred             eEEEEEEecCCCcchhHHHHHccC-ChhhccccCCcceEEEeecCcEEEEEEecCCccc------cchhhhhhhhc----
Confidence            368999999999999999999998 5666666666655555555567899999999643      55666655443    


Q ss_pred             ccccceEEEEEeCCCC--CCcchHHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEee
Q 024325          172 RVSLKRVCLLIDTKWG--VKPRDHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS  246 (269)
Q Consensus       172 ~~~~d~vl~vid~~~~--~~~~~~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vS  246 (269)
                         .|.++||||+.+.  +.+...++.+.+..   ..+|+.+..||-|++.....++....+.  +.........+-.+|
T Consensus        86 ---vd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~kln--l~~lrdRswhIq~cs  160 (185)
T KOG0074|consen   86 ---VDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLN--LAGLRDRSWHIQECS  160 (185)
T ss_pred             ---cceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcc--hhhhhhceEEeeeCc
Confidence               9999999997642  11222344444443   4689999999999987655444332221  111112245678899


Q ss_pred             CCCCCCHHHHHHHHHHhhh
Q 024325          247 SKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       247 a~~g~gi~~L~~~i~~~~~  265 (269)
                      |.+++|+..-.+|+.....
T Consensus       161 als~eg~~dg~~wv~sn~~  179 (185)
T KOG0074|consen  161 ALSLEGSTDGSDWVQSNPE  179 (185)
T ss_pred             cccccCccCcchhhhcCCC
Confidence            9999999999999876654

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=99.42  E-value=8e-13  Score=112.36  Aligned_cols=165  Identities=15%  Similarity=0.116  Sum_probs=90.5

Q ss_pred             CCCCCCCCcEEEEEcCCCCChHHHHHHHhcCc----CccccCCCCCceeEeeE-EEeCCcEEEEcCCCCCCcchhHHHHH
Q 024325           85 SSFPAPDLPEIAFAGRSNVGKSSMLNALTRQW----GVVRTSDKPGLTQTINF-FKLGTKLCLVDLPGYGFAYAKEEVKD  159 (269)
Q Consensus        85 ~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~----~~~~~s~~~gtt~~~~~-~~~~~~~~lvDtpG~~~~~~~~~~~~  159 (269)
                      ..+...+...|.++|.||||||||++.+++..    ..+.+....++..|... ...+..+..+-|.+.+.. ....+..
T Consensus        97 ~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t~~Da~rI~~~g~pvvqi~tG~~Chl-~a~mv~~  175 (290)
T PRK10463         97 ARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAARIRATGTPAIQVNTGKGCHL-DAQMIAD  175 (290)
T ss_pred             HHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCcHHHHHHHHhcCCcEEEecCCCCCcC-cHHHHHH
Confidence            33445678899999999999999998877641    22223333334434321 122455666666544332 2333444


Q ss_pred             HHHHHHHHHHhcccccceEEEEEeCCCCC-Ccch------------------HHHHHHHHhhCCcEEEEEecCCCCCc--
Q 024325          160 AWEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRD------------------HELISLMERSQTKYQVVLTKTDTVFP--  218 (269)
Q Consensus       160 ~~~~~~~~~~~~~~~~d~vl~vid~~~~~-~~~~------------------~~~~~~l~~~~~p~iiv~NK~Dl~~~--  218 (269)
                      .+..+..        .+.-+++++..-.+ .+..                  ...++.-.....+-++|+||+|+.+.  
T Consensus       176 Al~~L~~--------~~~d~liIEnvGnLvcPa~fdlge~~~v~vlsV~eg~dkplKyp~~f~~ADIVVLNKiDLl~~~~  247 (290)
T PRK10463        176 AAPRLPL--------DDNGILFIENVGNLVCPASFDLGEKHKVAVLSVTEGEDKPLKYPHMFAAASLMLLNKVDLLPYLN  247 (290)
T ss_pred             HHHHHhh--------cCCcEEEEECCCCccCCCccchhhceeEEEEECccccccchhccchhhcCcEEEEEhHHcCcccH
Confidence            4333322        11122233322100 1000                  00111111123567999999999863  


Q ss_pred             hHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHh
Q 024325          219 IDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI  263 (269)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~  263 (269)
                      .++....+.++..     ....+++++||++|+|+++|.+||...
T Consensus       248 ~dle~~~~~lr~l-----np~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        248 FDVEKCIACAREV-----NPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             HHHHHHHHHHHhh-----CCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            2344444433332     125789999999999999999999874

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.40  E-value=1.2e-12  Score=97.73  Aligned_cols=158  Identities=18%  Similarity=0.209  Sum_probs=102.6

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR  172 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~  172 (269)
                      .++.++|--|+||+|++-++--. ++...-+.+|..... ..+.+-++.+||..|..+      ++..|+..    ++  
T Consensus        19 ~rililgldGaGkttIlyrlqvg-evvttkPtigfnve~-v~yKNLk~~vwdLggqtS------irPyWRcY----y~--   84 (182)
T KOG0072|consen   19 MRILILGLDGAGKTTILYRLQVG-EVVTTKPTIGFNVET-VPYKNLKFQVWDLGGQTS------IRPYWRCY----YA--   84 (182)
T ss_pred             eEEEEeeccCCCeeEEEEEcccC-cccccCCCCCcCccc-cccccccceeeEccCccc------ccHHHHHH----hc--
Confidence            47999999999999998776543 222222333322221 223577899999998643      44556543    33  


Q ss_pred             cccceEEEEEeCCCC--CCcchHHHHHHHHhh---CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeC
Q 024325          173 VSLKRVCLLIDTKWG--VKPRDHELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS  247 (269)
Q Consensus       173 ~~~d~vl~vid~~~~--~~~~~~~~~~~l~~~---~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa  247 (269)
                       +.|.++||+|+++.  +.....++...+.+.   +..+++++||.|........+....+.  +.........+|..||
T Consensus        85 -dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~--l~~Lk~r~~~Iv~tSA  161 (182)
T KOG0072|consen   85 -DTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLG--LQKLKDRIWQIVKTSA  161 (182)
T ss_pred             -ccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhC--hHHHhhheeEEEeecc
Confidence             38999999999853  233334555555432   356789999999876543333332222  2222233477999999


Q ss_pred             CCCCCHHHHHHHHHHhhhhh
Q 024325          248 KSGAGIRSLRTVLSKIARFA  267 (269)
Q Consensus       248 ~~g~gi~~L~~~i~~~~~~~  267 (269)
                      .+|+|+|..++|+.+.++..
T Consensus       162 ~kg~Gld~~~DWL~~~l~~~  181 (182)
T KOG0072|consen  162 VKGEGLDPAMDWLQRPLKSR  181 (182)
T ss_pred             ccccCCcHHHHHHHHHHhcc
Confidence            99999999999999987653

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.40  E-value=1.5e-11  Score=113.79  Aligned_cols=125  Identities=20%  Similarity=0.207  Sum_probs=79.7

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCC-CCceeEeeEE--EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK-PGLTQTINFF--KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~-~gtt~~~~~~--~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      ..+|+++|.+|+||||++|+|++. ....++.. ++||+.....  ..+..+.+|||||+.++.............+..+
T Consensus       118 slrIvLVGKTGVGKSSLINSILGe-kvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~  196 (763)
T TIGR00993       118 SLNILVLGKSGVGKSATINSIFGE-VKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKF  196 (763)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcc-ccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHH
Confidence            468999999999999999999998 44555554 5666543332  2467899999999987633221111111222223


Q ss_pred             HhcccccceEEEEEeCCC-CCCcchHHHHHHHHhh-----CCcEEEEEecCCCCCc
Q 024325          169 VSTRVSLKRVCLLIDTKW-GVKPRDHELISLMERS-----QTKYQVVLTKTDTVFP  218 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~-~~~~~~~~~~~~l~~~-----~~p~iiv~NK~Dl~~~  218 (269)
                      +.. ..+|++++|..... .....+...++.+...     -..+|+|+|..|..++
T Consensus       197 Lsk-~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp  251 (763)
T TIGR00993       197 IKK-NPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPP  251 (763)
T ss_pred             Hhc-CCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence            332 23788888876542 1122344566666442     2468999999999974

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.39  E-value=1.2e-11  Score=103.53  Aligned_cols=119  Identities=21%  Similarity=0.262  Sum_probs=59.6

Q ss_pred             cEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhccc--ccceEEEEEeCCCCCCcchH-----HHHHHHHhhCCcEEEEEe
Q 024325          139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV--SLKRVCLLIDTKWGVKPRDH-----ELISLMERSQTKYQVVLT  211 (269)
Q Consensus       139 ~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~vl~vid~~~~~~~~~~-----~~~~~l~~~~~p~iiv~N  211 (269)
                      .+.++||||+.+-+       .+..........+.  ..-++++++|+.....+...     ..+....+.+.|.+.|+|
T Consensus        92 ~y~l~DtPGQiElf-------~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvls  164 (238)
T PF03029_consen   92 DYLLFDTPGQIELF-------THSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLS  164 (238)
T ss_dssp             SEEEEE--SSHHHH-------HHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE-
T ss_pred             cEEEEeCCCCEEEE-------EechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeee
Confidence            58999999974421       11222233333333  23468889998743332221     111223346899999999


Q ss_pred             cCCCCCchHHHHHH-----------------HHHHHHHHh-cCCC--CCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          212 KTDTVFPIDVARRA-----------------MQIEESLKA-NNSL--VQPVMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       212 K~Dl~~~~~~~~~~-----------------~~~~~~~~~-~~~~--~~~vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      |+|+.++. .....                 ..+.+.+.. ....  ..+++++|+++++|+++|+..|-+.++
T Consensus       165 K~Dl~~~~-~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~~  237 (238)
T PF03029_consen  165 KIDLLSKY-LEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKANQ  237 (238)
T ss_dssp             -GGGS-HH-HHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHHH
T ss_pred             ccCcccch-hHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHhc
Confidence            99999832 11111                 111111111 1111  236899999999999999999988765

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=99.39  E-value=7.4e-13  Score=105.46  Aligned_cols=57  Identities=33%  Similarity=0.545  Sum_probs=51.8

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCC
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY  148 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~  148 (269)
                      ...+++++|.||+|||||+|+|++. ..+.+++.||+|++......+..+.++||||+
T Consensus       116 ~~~~~~~vG~pnvGKSslin~l~~~-~~~~~~~~pg~T~~~~~~~~~~~~~l~DtPGi  172 (172)
T cd04178         116 TSITVGVVGFPNVGKSSLINSLKRS-RACNVGATPGVTKSMQEVHLDKKVKLLDSPGI  172 (172)
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCc-ccceecCCCCeEcceEEEEeCCCEEEEECcCC
Confidence            3468999999999999999999998 56789999999999988887888999999995

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd01858 NGP_1 NGP-1

Probab=99.39  E-value=8e-13  Score=103.91  Aligned_cols=56  Identities=34%  Similarity=0.596  Sum_probs=50.6

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY  148 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~  148 (269)
                      ..+|+++|.||+|||||+|+|.+. ....++++||+|++..+...+..+.++||||+
T Consensus       102 ~~~v~~~G~~nvGKStliN~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~liDtPGi  157 (157)
T cd01858         102 QISVGFIGYPNVGKSSIINTLRSK-KVCKVAPIPGETKVWQYITLMKRIYLIDCPGV  157 (157)
T ss_pred             ceEEEEEeCCCCChHHHHHHHhcC-CceeeCCCCCeeEeEEEEEcCCCEEEEECcCC
Confidence            457899999999999999999998 56789999999999988877777999999995

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.36  E-value=1.8e-11  Score=110.54  Aligned_cols=153  Identities=18%  Similarity=0.247  Sum_probs=104.4

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCc-----------------------------cccCCCCCceeEeeE---EEeCC
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGV-----------------------------VRTSDKPGLTQTINF---FKLGT  138 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~-----------------------------~~~s~~~gtt~~~~~---~~~~~  138 (269)
                      ....++++|..++|||||+-+|+...+.                             .......|+|.++..   .+...
T Consensus       176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~  255 (603)
T KOG0458|consen  176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK  255 (603)
T ss_pred             cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence            4568999999999999999887632100                             001123456666532   22345


Q ss_pred             cEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCC-------CcchHHHHHHHHhhCC-cEEEEE
Q 024325          139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-------KPRDHELISLMERSQT-KYQVVL  210 (269)
Q Consensus       139 ~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~-------~~~~~~~~~~l~~~~~-p~iiv~  210 (269)
                      .++++|+||+             ..++...+.+...+|+.++|+|++.+.       ..+..++...+...++ .+|+++
T Consensus       256 ~~tliDaPGh-------------kdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivai  322 (603)
T KOG0458|consen  256 IVTLIDAPGH-------------KDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAI  322 (603)
T ss_pred             eEEEecCCCc-------------cccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEe
Confidence            6999999996             345666777777899999999998532       2234566677777775 589999


Q ss_pred             ecCCCCCc--hHHHHHHHHHHHHHHhcCC---CCCCeEEeeCCCCCCHHHH
Q 024325          211 TKTDTVFP--IDVARRAMQIEESLKANNS---LVQPVMMVSSKSGAGIRSL  256 (269)
Q Consensus       211 NK~Dl~~~--~~~~~~~~~~~~~~~~~~~---~~~~vi~vSa~~g~gi~~L  256 (269)
                      ||+|+++-  +...++...+..++....+   ....++|||+.+|+|+-..
T Consensus       323 NKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~  373 (603)
T KOG0458|consen  323 NKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI  373 (603)
T ss_pred             ecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence            99999974  3345555566666633222   2457999999999998653

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.35  E-value=4.5e-11  Score=103.79  Aligned_cols=142  Identities=20%  Similarity=0.325  Sum_probs=97.6

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCcccc------CCCCCceeEeeEEE-------eCCcEEEEcCCCCCCcch----h
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRT------SDKPGLTQTINFFK-------LGTKLCLVDLPGYGFAYA----K  154 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~------s~~~gtt~~~~~~~-------~~~~~~lvDtpG~~~~~~----~  154 (269)
                      .+.+.++|..|.|||||+|.|+.. ....-      +..+..|..+....       ....++++||||+++...    .
T Consensus        21 ~ftlmvvG~sGlGKsTfiNsLf~~-~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w   99 (366)
T KOG2655|consen   21 DFTLMVVGESGLGKSTFINSLFLT-DLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW   99 (366)
T ss_pred             ceEEEEecCCCccHHHHHHHHHhh-hccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence            378999999999999999999987 22211      11111122221111       123588999999998643    3


Q ss_pred             HHHHHHHHHHHHHHHhcc--------c--ccceEEEEEeCC-CCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHH
Q 024325          155 EEVKDAWEELVKEYVSTR--------V--SLKRVCLLIDTK-WGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVAR  223 (269)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~--------~--~~d~vl~vid~~-~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~  223 (269)
                      ..+.+...+-.+.|+..-        .  -+++++|.+.+. +++.+.|.++++.+.. .+++|.|+.|+|...+.++..
T Consensus       100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~-~vNiIPVI~KaD~lT~~El~~  178 (366)
T KOG2655|consen  100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSK-KVNLIPVIAKADTLTKDELNQ  178 (366)
T ss_pred             hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhc-cccccceeeccccCCHHHHHH
Confidence            344444444445555421        1  278899988764 5799999999888875 689999999999999999888


Q ss_pred             HHHHHHHHHHhc
Q 024325          224 RAMQIEESLKAN  235 (269)
Q Consensus       224 ~~~~~~~~~~~~  235 (269)
                      ....+.+.+...
T Consensus       179 ~K~~I~~~i~~~  190 (366)
T KOG2655|consen  179 FKKRIRQDIEEH  190 (366)
T ss_pred             HHHHHHHHHHHc
Confidence            887777766654

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.34  E-value=3.3e-12  Score=122.91  Aligned_cols=113  Identities=16%  Similarity=0.206  Sum_probs=78.0

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCc--------cccCC------CCCceeEee-------EEEeCCcEEEEcCCCCCC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGV--------VRTSD------KPGLTQTIN-------FFKLGTKLCLVDLPGYGF  150 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~--------~~~s~------~~gtt~~~~-------~~~~~~~~~lvDtpG~~~  150 (269)
                      ..+|+++|+.++|||||+++|+.....        ....+      ..|+|.+..       +...+..+.+|||||+.+
T Consensus        19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~   98 (720)
T TIGR00490        19 IRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVD   98 (720)
T ss_pred             ccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCccc
Confidence            468999999999999999998743110        00001      123343321       112356799999999853


Q ss_pred             cchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCC
Q 024325          151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF  217 (269)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~  217 (269)
                      -.             ......+..+|++++|+|+..++..++..++..+...+.|.++|+||+|...
T Consensus        99 f~-------------~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~  152 (720)
T TIGR00490        99 FG-------------GDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLI  152 (720)
T ss_pred             cH-------------HHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhccc
Confidence            11             1112223349999999999988888888888877777889999999999874

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=99.34  E-value=2.2e-12  Score=97.94  Aligned_cols=154  Identities=19%  Similarity=0.138  Sum_probs=95.9

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCcc-ccCC--CCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVV-RTSD--KPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~-~~s~--~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      .++++++|..=+|||||+-+.+....-. ..+.  ..+.++.++.......+.+|||+|.          +.+..+..-|
T Consensus        13 ~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQ----------ErfHALGPIY   82 (218)
T KOG0088|consen   13 KFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQ----------ERFHALGPIY   82 (218)
T ss_pred             eeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccch----------HhhhccCceE
Confidence            3689999999999999998877652000 0000  0113333444334456889999996          3455565666


Q ss_pred             HhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHH-HHHHHHHHhcCCCCCCeE
Q 024325          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRA-MQIEESLKANNSLVQPVM  243 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~~~vi  243 (269)
                      ++.   ++.+++|+|..+....+. ..+...+..   ..+.+++|.||+||-....+.... ..+.+      .-+..++
T Consensus        83 YRg---SnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAe------svGA~y~  153 (218)
T KOG0088|consen   83 YRG---SNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAE------SVGALYM  153 (218)
T ss_pred             EeC---CCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHH------hhchhhe
Confidence            665   889999999864322221 223333333   346789999999985432222111 11111      1246689


Q ss_pred             EeeCCCCCCHHHHHHHHHHhh
Q 024325          244 MVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       244 ~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      .+||+.+.||.+||+.+...+
T Consensus       154 eTSAk~N~Gi~elFe~Lt~~M  174 (218)
T KOG0088|consen  154 ETSAKDNVGISELFESLTAKM  174 (218)
T ss_pred             ecccccccCHHHHHHHHHHHH
Confidence            999999999999999887654

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=99.33  E-value=1.6e-12  Score=115.40  Aligned_cols=135  Identities=18%  Similarity=0.236  Sum_probs=87.3

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCc----CccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQW----GVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~----~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      ..|+++|.+|+|||||+|+|++..    ....+++.||||++......+..+.++||||+....   .+......-.-.+
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~~~l~DtPG~~~~~---~~~~~l~~~~l~~  231 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDGHSLYDTPGIINSH---QMAHYLDKKDLKY  231 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCCCEEEECCCCCChh---HhhhhcCHHHHhh
Confidence            489999999999999999999852    235789999999999888776778999999997541   1111111000012


Q ss_pred             HhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHH
Q 024325          169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE  230 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~  230 (269)
                      +.-......+.+.+|....+.......++.+......+.+.++|.+.......++..+.+.+
T Consensus       232 ~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~~~~~~~~~~~~~~~~h~t~~~~a~~~~~~  293 (360)
T TIGR03597       232 ITPKKEIKPKTYQLNPNQTLFLGGLARFDYLKGEKTSFTFYVSNELNIHRTKLENADELYNK  293 (360)
T ss_pred             cCCCCccCceEEEeCCCCEEEEceEEEEEEecCCceEEEEEccCCceeEeechhhhHHHHHh
Confidence            22233467788888876544433333334444445567788888777765555444444443

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=99.32  E-value=5.7e-11  Score=96.57  Aligned_cols=141  Identities=22%  Similarity=0.334  Sum_probs=91.5

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccC-------CCCCceeEeeEE------EeCCcEEEEcCCCCCCcchh----H
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTS-------DKPGLTQTINFF------KLGTKLCLVDLPGYGFAYAK----E  155 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s-------~~~gtt~~~~~~------~~~~~~~lvDtpG~~~~~~~----~  155 (269)
                      ++|++||.+|.|||||+|.|+..+ +...+       ++|-||.-....      ...-+++++||||+++....    +
T Consensus        47 FNIMVVgqSglgkstlinTlf~s~-v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWe  125 (336)
T KOG1547|consen   47 FNIMVVGQSGLGKSTLINTLFKSH-VSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWE  125 (336)
T ss_pred             eEEEEEecCCCCchhhHHHHHHHH-HhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhH
Confidence            789999999999999999998762 22211       233333322111      12346889999999986433    2


Q ss_pred             HHHHHHHHHHHHHHhc---------cc--ccceEEEEEeCC-CCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHH
Q 024325          156 EVKDAWEELVKEYVST---------RV--SLKRVCLLIDTK-WGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVAR  223 (269)
Q Consensus       156 ~~~~~~~~~~~~~~~~---------~~--~~d~vl~vid~~-~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~  223 (269)
                      .+.....+-...|++.         ..  -++.++|.+.+. +.+.+.|.++++.|.+ -++++-|+.|+|-+.-++...
T Consensus       126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~-vvNvvPVIakaDtlTleEr~~  204 (336)
T KOG1547|consen  126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTE-VVNVVPVIAKADTLTLEERSA  204 (336)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhh-hheeeeeEeecccccHHHHHH
Confidence            2222222222222221         11  266788877654 5788888888888765 367899999999998777777


Q ss_pred             HHHHHHHHHHhc
Q 024325          224 RAMQIEESLKAN  235 (269)
Q Consensus       224 ~~~~~~~~~~~~  235 (269)
                      ..+.+++.+...
T Consensus       205 FkqrI~~el~~~  216 (336)
T KOG1547|consen  205 FKQRIRKELEKH  216 (336)
T ss_pred             HHHHHHHHHHhc
Confidence            777777766654

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.30  E-value=6.7e-11  Score=88.20  Aligned_cols=144  Identities=19%  Similarity=0.183  Sum_probs=93.0

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCc------eeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL------TQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gt------t~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~  165 (269)
                      .++..++|.-|+|||.|+..++.+.   +..+.|.|      |+-+.......++.+|||+|.          +.+....
T Consensus        11 ifkyiiigdmgvgkscllhqftekk---fmadcphtigvefgtriievsgqkiklqiwdtagq----------erfravt   77 (215)
T KOG0097|consen   11 IFKYIIIGDMGVGKSCLLHQFTEKK---FMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ----------ERFRAVT   77 (215)
T ss_pred             eEEEEEEccccccHHHHHHHHHHHH---HhhcCCcccceecceeEEEecCcEEEEEEeecccH----------HHHHHHH
Confidence            4688999999999999999998873   34444432      333333333567899999995          4566777


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHh---h---CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCC
Q 024325          166 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER---S---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLV  239 (269)
Q Consensus       166 ~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~---~---~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  239 (269)
                      +.|++.   +...++|.|.....+-.  .+-.|+..   .   +.-++++.||.|+-...++..  +..+++..+   .+
T Consensus        78 rsyyrg---aagalmvyditrrstyn--hlsswl~dar~ltnpnt~i~lignkadle~qrdv~y--eeak~faee---ng  147 (215)
T KOG0097|consen   78 RSYYRG---AAGALMVYDITRRSTYN--HLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTY--EEAKEFAEE---NG  147 (215)
T ss_pred             HHHhcc---ccceeEEEEehhhhhhh--hHHHHHhhhhccCCCceEEEEecchhhhhhcccCcH--HHHHHHHhh---cC
Confidence            777777   66778888876432222  23333332   2   234788999999865433221  112222222   24


Q ss_pred             CCeEEeeCCCCCCHHHHHH
Q 024325          240 QPVMMVSSKSGAGIRSLRT  258 (269)
Q Consensus       240 ~~vi~vSa~~g~gi~~L~~  258 (269)
                      ...+..||++|+|+++.+-
T Consensus       148 l~fle~saktg~nvedafl  166 (215)
T KOG0097|consen  148 LMFLEASAKTGQNVEDAFL  166 (215)
T ss_pred             eEEEEecccccCcHHHHHH
Confidence            6678999999999998763

>TIGR00101 ureG urease accessory protein UreG

Probab=99.30  E-value=3.1e-11  Score=98.47  Aligned_cols=81  Identities=15%  Similarity=0.103  Sum_probs=52.6

Q ss_pred             cceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCc--hHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCC
Q 024325          175 LKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP--IDVARRAMQIEESLKANNSLVQPVMMVSSKSGAG  252 (269)
Q Consensus       175 ~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~g  252 (269)
                      ++.++.|+|+..+..... .   ...+....-++++||+|+.+.  .+.....+.++.    . ....+++++||++|+|
T Consensus       113 ~~~~i~vvD~~~~~~~~~-~---~~~qi~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~----~-~~~~~i~~~Sa~~g~g  183 (199)
T TIGR00101       113 ADLTIFVIDVAAGDKIPR-K---GGPGITRSDLLVINKIDLAPMVGADLGVMERDAKK----M-RGEKPFIFTNLKTKEG  183 (199)
T ss_pred             hCcEEEEEEcchhhhhhh-h---hHhHhhhccEEEEEhhhccccccccHHHHHHHHHH----h-CCCCCEEEEECCCCCC
Confidence            567888999875433211 1   111222334899999999853  333333333332    2 2358899999999999


Q ss_pred             HHHHHHHHHHhh
Q 024325          253 IRSLRTVLSKIA  264 (269)
Q Consensus       253 i~~L~~~i~~~~  264 (269)
                      +++++++|.+.+
T Consensus       184 i~el~~~i~~~~  195 (199)
T TIGR00101       184 LDTVIDWIEHYA  195 (199)
T ss_pred             HHHHHHHHHhhc
Confidence            999999998765

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.29  E-value=4.3e-12  Score=93.67  Aligned_cols=150  Identities=19%  Similarity=0.195  Sum_probs=94.7

Q ss_pred             EEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE----E---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325           97 FAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF----K---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (269)
Q Consensus        97 ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~----~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~  169 (269)
                      ++|.+++|||.|+-++-..   ++..+.--.|..+.+.    .   ...++.+|||+|.          +.+.+....|+
T Consensus         2 llgds~~gktcllir~kdg---afl~~~fistvgid~rnkli~~~~~kvklqiwdtagq----------erfrsvt~ayy   68 (192)
T KOG0083|consen    2 LLGDSCTGKTCLLIRFKDG---AFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQ----------ERFRSVTHAYY   68 (192)
T ss_pred             ccccCccCceEEEEEeccC---ceecCceeeeeeeccccceeccCCcEEEEEEeeccch----------HHHhhhhHhhh
Confidence            6899999999998665433   2222111122222221    1   1345889999996          44556566666


Q ss_pred             hcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHHH-HHHHHHHHHHhcCCCCCCeEE
Q 024325          170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVAR-RAMQIEESLKANNSLVQPVMM  244 (269)
Q Consensus       170 ~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~vi~  244 (269)
                      +.   +|.++++.|..+..+... ..++..+.+   ..+.+.++.||||+.....+.. .-+.+.+   .+   ..|.+.
T Consensus        69 rd---a~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~---~y---~ipfme  139 (192)
T KOG0083|consen   69 RD---ADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAE---AY---GIPFME  139 (192)
T ss_pred             cc---cceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHH---HH---CCCcee
Confidence            55   999999999876544333 345555543   3567889999999965321111 0111222   12   589999


Q ss_pred             eeCCCCCCHHHHHHHHHHhhhhhc
Q 024325          245 VSSKSGAGIRSLRTVLSKIARFAK  268 (269)
Q Consensus       245 vSa~~g~gi~~L~~~i~~~~~~~k  268 (269)
                      +||++|-|+|..+-.|.+.+...+
T Consensus       140 tsaktg~nvd~af~~ia~~l~k~~  163 (192)
T KOG0083|consen  140 TSAKTGFNVDLAFLAIAEELKKLK  163 (192)
T ss_pred             ccccccccHhHHHHHHHHHHHHhc
Confidence            999999999999998887765543

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=99.29  E-value=4.3e-12  Score=104.10  Aligned_cols=154  Identities=19%  Similarity=0.236  Sum_probs=105.0

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe---eEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~---~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~  169 (269)
                      -+|.++|.|++|||||+.-|.+..  ..+..+.+||.-.   ...+.+.++.+.|.||+.+......      .-.++.+
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g~~--s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgk------grg~qvi  131 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTGTF--SEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGK------GRGKQVI  131 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcCCC--CccccccceeEEEecceEeccccceeeecCcchhcccccCC------CCccEEE
Confidence            379999999999999999999974  6778888877665   2445688999999999976521110      0112334


Q ss_pred             hcccccceEEEEEeCCCCCCcch--------------------------------------H------------------
Q 024325          170 STRVSLKRVCLLIDTKWGVKPRD--------------------------------------H------------------  193 (269)
Q Consensus       170 ~~~~~~d~vl~vid~~~~~~~~~--------------------------------------~------------------  193 (269)
                      .....|+++++|+|...++....                                      .                  
T Consensus       132 avartcnli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~  211 (358)
T KOG1487|consen  132 AVARTCNLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIA  211 (358)
T ss_pred             EEeecccEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchhee
Confidence            44455888888888754322110                                      0                  


Q ss_pred             --------HHHHHHHhh--CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHh
Q 024325          194 --------ELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI  263 (269)
Q Consensus       194 --------~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~  263 (269)
                              .++..++..  -+|++.++||+|.++-+++.-.            ......+++||.+++|+|+|++.+.+.
T Consensus       212 Lr~DaT~DdLIdvVegnr~yVp~iyvLNkIdsISiEELdii------------~~iphavpISA~~~wn~d~lL~~mwey  279 (358)
T KOG1487|consen  212 LRFDATADDLIDVVEGNRIYVPCIYVLNKIDSISIEELDII------------YTIPHAVPISAHTGWNFDKLLEKMWEY  279 (358)
T ss_pred             eecCcchhhhhhhhccCceeeeeeeeecccceeeeecccee------------eeccceeecccccccchHHHHHHHhhc
Confidence                    111112222  3689999999999876554211            113557999999999999999999887


Q ss_pred             hhh
Q 024325          264 ARF  266 (269)
Q Consensus       264 ~~~  266 (269)
                      +.-
T Consensus       280 L~L  282 (358)
T KOG1487|consen  280 LKL  282 (358)
T ss_pred             chh
Confidence            654

>COG1161 Predicted GTPases [General function prediction only]

Probab=99.28  E-value=6e-12  Score=109.94  Aligned_cols=59  Identities=36%  Similarity=0.568  Sum_probs=54.6

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCc
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFA  151 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~  151 (269)
                      ..+|+++|.||+|||||||+|.++ ..+.+++.||+|.+.++...+..+.++||||+..+
T Consensus       132 ~~~v~vvG~PNVGKSslIN~L~~k-~~~~~s~~PG~Tk~~q~i~~~~~i~LlDtPGii~~  190 (322)
T COG1161         132 KIRVGVVGYPNVGKSTLINRLLGK-KVAKTSNRPGTTKGIQWIKLDDGIYLLDTPGIIPP  190 (322)
T ss_pred             ceEEEEEcCCCCcHHHHHHHHhcc-cceeeCCCCceecceEEEEcCCCeEEecCCCcCCC
Confidence            357999999999999999999999 66899999999999999999889999999999765

>PTZ00099 rab6; Provisional

Probab=99.28  E-value=4.3e-11  Score=95.85  Aligned_cols=112  Identities=16%  Similarity=0.086  Sum_probs=70.2

Q ss_pred             CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEec
Q 024325          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTK  212 (269)
Q Consensus       137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK  212 (269)
                      ...+.+|||||...          +..+...|++   .+|++++|+|.+...+..+ ..++..+..   ...|+++|+||
T Consensus        28 ~v~l~iwDt~G~e~----------~~~~~~~~~~---~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK   94 (176)
T PTZ00099         28 PVRLQLWDTAGQER----------FRSLIPSYIR---DSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNK   94 (176)
T ss_pred             EEEEEEEECCChHH----------hhhccHHHhC---CCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEC
Confidence            35688999999622          2333344443   4999999999875322222 233333322   25789999999


Q ss_pred             CCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325          213 TDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       213 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      +|+........  .........   ....++++||++|.|+++++++|.+.+..
T Consensus        95 ~DL~~~~~v~~--~e~~~~~~~---~~~~~~e~SAk~g~nV~~lf~~l~~~l~~  143 (176)
T PTZ00099         95 TDLGDLRKVTY--EEGMQKAQE---YNTMFHETSAKAGHNIKVLFKKIAAKLPN  143 (176)
T ss_pred             cccccccCCCH--HHHHHHHHH---cCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            99964211110  011111111   13568999999999999999999987643

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.27  E-value=5.1e-12  Score=97.90  Aligned_cols=151  Identities=18%  Similarity=0.200  Sum_probs=97.0

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCC------CceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP------GLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~------gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      ++++++|..++||||+|.+.|..   .++.++.      .+.++......+....+|||+|.          +.+..+..
T Consensus        21 iK~vivGng~VGKssmiqryCkg---ifTkdykktIgvdflerqi~v~~Edvr~mlWdtagq----------eEfDaItk   87 (246)
T KOG4252|consen   21 IKFVIVGNGSVGKSSMIQRYCKG---IFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQ----------EEFDAITK   87 (246)
T ss_pred             EEEEEECCCccchHHHHHHHhcc---ccccccccccchhhhhHHHHhhHHHHHHHHHHhccc----------hhHHHHHH
Confidence            68999999999999999999964   2222221      11222222223556789999996          34566777


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcc-hHHHHHHHHh--hCCcEEEEEecCCCCCchHHHHHH-HHHHHHHHhcCCCCCCe
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER--SQTKYQVVLTKTDTVFPIDVARRA-MQIEESLKANNSLVQPV  242 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~-~~~~~~~l~~--~~~p~iiv~NK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~~~v  242 (269)
                      .|+++   +.+.++|+...+..... ..++.+.+..  ..+|.++|-||+|+++......-. +.+.+.+      ....
T Consensus        88 Ayyrg---aqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds~~~~~evE~lak~l------~~Rl  158 (246)
T KOG4252|consen   88 AYYRG---AQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKL------HKRL  158 (246)
T ss_pred             HHhcc---ccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhhhcchHHHHHHHHHh------hhhh
Confidence            88887   67777777655322111 1233333322  479999999999999764433211 1111111      2446


Q ss_pred             EEeeCCCCCCHHHHHHHHHHhhh
Q 024325          243 MMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       243 i~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      +.+|++..-|+-..|..|.+.+-
T Consensus       159 yRtSvked~NV~~vF~YLaeK~~  181 (246)
T KOG4252|consen  159 YRTSVKEDFNVMHVFAYLAEKLT  181 (246)
T ss_pred             hhhhhhhhhhhHHHHHHHHHHHH
Confidence            88999999999999998877653

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.27  E-value=2.8e-11  Score=92.03  Aligned_cols=152  Identities=17%  Similarity=0.138  Sum_probs=89.9

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcC-ccccCC--CCCceeEeeEEEeC---------CcEEEEcCCCCCCcchhHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWG-VVRTSD--KPGLTQTINFFKLG---------TKLCLVDLPGYGFAYAKEEVKDA  160 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~-~~~~s~--~~gtt~~~~~~~~~---------~~~~lvDtpG~~~~~~~~~~~~~  160 (269)
                      ++...+|.+|+||||++-..+...- ..+++.  +-+....+.+...+         ..+.+|||+|.          +.
T Consensus        10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQ----------ER   79 (219)
T KOG0081|consen   10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQ----------ER   79 (219)
T ss_pred             HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccH----------HH
Confidence            3566789999999999977765420 001110  00001111111111         24889999995          45


Q ss_pred             HHHHHHHHHhcccccceEEEEEeCCCCCCcc-hHHHHHHHHhh----CCcEEEEEecCCCCCchHHHHH-HHHHHHHHHh
Q 024325          161 WEELVKEYVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMERS----QTKYQVVLTKTDTVFPIDVARR-AMQIEESLKA  234 (269)
Q Consensus       161 ~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~-~~~~~~~l~~~----~~p~iiv~NK~Dl~~~~~~~~~-~~~~~~~~~~  234 (269)
                      +.++...|++.   +=..++++|....-... ...++..+..+    +..++++.||+|+.+...+.+. ...+.+.   
T Consensus        80 FRSLTTAFfRD---AMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~k---  153 (219)
T KOG0081|consen   80 FRSLTTAFFRD---AMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADK---  153 (219)
T ss_pred             HHHHHHHHHHh---hccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHH---
Confidence            66777777665   56678888865321111 12344444432    3448899999999765433322 2223222   


Q ss_pred             cCCCCCCeEEeeCCCCCCHHHHHHHHHHh
Q 024325          235 NNSLVQPVMMVSSKSGAGIRSLRTVLSKI  263 (269)
Q Consensus       235 ~~~~~~~vi~vSa~~g~gi~~L~~~i~~~  263 (269)
                         .+.|+|.+||-+|.|+++..+.+.+.
T Consensus       154 ---yglPYfETSA~tg~Nv~kave~Lldl  179 (219)
T KOG0081|consen  154 ---YGLPYFETSACTGTNVEKAVELLLDL  179 (219)
T ss_pred             ---hCCCeeeeccccCcCHHHHHHHHHHH
Confidence               26899999999999998877666554

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.26  E-value=1.8e-10  Score=96.25  Aligned_cols=145  Identities=20%  Similarity=0.276  Sum_probs=104.6

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcC---------c-----cccCCCCCceeE---eeEEEeCCcEEEEcCCCCCCcchh
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWG---------V-----VRTSDKPGLTQT---INFFKLGTKLCLVDLPGYGFAYAK  154 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~---------~-----~~~s~~~gtt~~---~~~~~~~~~~~lvDtpG~~~~~~~  154 (269)
                      ..+|+.+|+.+.|||||..+|+....         +     ++-....|.|-+   +.+.+....+-.+|+||+      
T Consensus        12 hVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGH------   85 (394)
T COG0050          12 HVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGH------   85 (394)
T ss_pred             eeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCCh------
Confidence            45899999999999999998875320         0     111122344443   344555778999999997      


Q ss_pred             HHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCc-EEEEEecCCCCCchHHHH-HHHHHHHHH
Q 024325          155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVAR-RAMQIEESL  232 (269)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p-~iiv~NK~Dl~~~~~~~~-~~~~~~~~~  232 (269)
                             .++++.++....+.|..|+|+.+.++..++..+.+-...+.++| +++++||+|++++.++.+ ....+.+.+
T Consensus        86 -------aDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLL  158 (394)
T COG0050          86 -------ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELL  158 (394)
T ss_pred             -------HHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHH
Confidence                   45566667777779999999999999899988877777778887 667899999998655544 345566666


Q ss_pred             HhcC--CCCCCeEEeeCCC
Q 024325          233 KANN--SLVQPVMMVSSKS  249 (269)
Q Consensus       233 ~~~~--~~~~~vi~vSa~~  249 (269)
                      ..+.  ....|++.-||..
T Consensus       159 s~y~f~gd~~Pii~gSal~  177 (394)
T COG0050         159 SEYGFPGDDTPIIRGSALK  177 (394)
T ss_pred             HHcCCCCCCcceeechhhh
Confidence            6654  2357888777754

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.26  E-value=1.8e-11  Score=102.68  Aligned_cols=162  Identities=19%  Similarity=0.245  Sum_probs=114.6

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcCcCcccc-------------------------CCCCCceeEee------------
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRT-------------------------SDKPGLTQTIN------------  132 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~-------------------------s~~~gtt~~~~------------  132 (269)
                      ..+++|.-+|+...||||++.++.|-+.+-+-                         -+.|++-+...            
T Consensus        36 QATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~  115 (466)
T KOG0466|consen   36 QATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRP  115 (466)
T ss_pred             eeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccC
Confidence            34678999999999999999999875211000                         01111111110            


Q ss_pred             ----EEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCC-CCcchHHHHHHHHhhC-CcE
Q 024325          133 ----FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-VKPRDHELISLMERSQ-TKY  206 (269)
Q Consensus       133 ----~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~-~~~~~~~~~~~l~~~~-~p~  206 (269)
                          .+..-..+.|+|+||.             .-++..++....-.|.+++++.+.+. .+++..+.+..++-+. +.+
T Consensus       116 g~~~~~klvRHVSfVDCPGH-------------DiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~Lkhi  182 (466)
T KOG0466|consen  116 GCEGKMKLVRHVSFVDCPGH-------------DILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHI  182 (466)
T ss_pred             CCCCceEEEEEEEeccCCch-------------HHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceE
Confidence                0011124789999996             34556666666667888888877653 4556666666555554 568


Q ss_pred             EEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325          207 QVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       207 iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      +++-||+|++......+..+.+..++......+.|++|+||.-++|+|-+.++|...+
T Consensus       183 iilQNKiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkI  240 (466)
T KOG0466|consen  183 IILQNKIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKI  240 (466)
T ss_pred             EEEechhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcC
Confidence            8999999999988887878888888877666678999999999999999999998765

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.26  E-value=8.4e-11  Score=101.05  Aligned_cols=136  Identities=20%  Similarity=0.280  Sum_probs=89.3

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcCcC-ccccCCCCCceeEeeEEEe-------------C------------------
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQWG-VVRTSDKPGLTQTINFFKL-------------G------------------  137 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~-~~~~s~~~gtt~~~~~~~~-------------~------------------  137 (269)
                      ...|.|.++|+.+.||||+|+.|+..+- -..+++.|.|.+-+.....             +                  
T Consensus        56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR  135 (532)
T KOG1954|consen   56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR  135 (532)
T ss_pred             ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence            3568999999999999999999998731 1234444433222111110             0                  


Q ss_pred             -----------CcEEEEcCCCCCCcchhHHHHH--HHHHHHHHHHhcccccceEEEEEeCCC-CCCcchHHHHHHHHhhC
Q 024325          138 -----------TKLCLVDLPGYGFAYAKEEVKD--AWEELVKEYVSTRVSLKRVCLLIDTKW-GVKPRDHELISLMERSQ  203 (269)
Q Consensus       138 -----------~~~~lvDtpG~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~vl~vid~~~-~~~~~~~~~~~~l~~~~  203 (269)
                                 .++.+|||||+-+...+ .+.+  -+......|...   +|.|++++|+.. .+.....+++..+..+.
T Consensus       136 f~csqmp~~vLe~vtiVdtPGILsgeKQ-risR~ydF~~v~~WFaeR---~D~IiLlfD~hKLDIsdEf~~vi~aLkG~E  211 (532)
T KOG1954|consen  136 FMCSQLPNQVLESVTIVDTPGILSGEKQ-RISRGYDFTGVLEWFAER---VDRIILLFDAHKLDISDEFKRVIDALKGHE  211 (532)
T ss_pred             HHHhcCChhhhhheeeeccCcccccchh-cccccCChHHHHHHHHHh---ccEEEEEechhhccccHHHHHHHHHhhCCc
Confidence                       12999999998654211 0111  122333444443   999999999863 34445568888898888


Q ss_pred             CcEEEEEecCCCCCchHHHHHHHHHH
Q 024325          204 TKYQVVLTKTDTVFPIDVARRAMQIE  229 (269)
Q Consensus       204 ~p~iiv~NK~Dl~~~~~~~~~~~~~~  229 (269)
                      -.+-+|+||+|.+++.++-++.-.+-
T Consensus       212 dkiRVVLNKADqVdtqqLmRVyGALm  237 (532)
T KOG1954|consen  212 DKIRVVLNKADQVDTQQLMRVYGALM  237 (532)
T ss_pred             ceeEEEeccccccCHHHHHHHHHHHH
Confidence            88999999999999887766554443

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.25  E-value=3.3e-11  Score=105.60  Aligned_cols=125  Identities=19%  Similarity=0.250  Sum_probs=88.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCc-Ccc-------------ccCC------CCC---ceeEeeEEEeCCcEEEEcCCCCCC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQW-GVV-------------RTSD------KPG---LTQTINFFKLGTKLCLVDLPGYGF  150 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~-~~~-------------~~s~------~~g---tt~~~~~~~~~~~~~lvDtpG~~~  150 (269)
                      ..+|+-+|.||||||-..|+--- .+.             -.|+      ..|   |+.-++|.+.+..++++||||+.+
T Consensus        14 TFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHeD   93 (528)
T COG4108          14 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHED   93 (528)
T ss_pred             ceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCccc
Confidence            68999999999999998765210 010             0111      111   233345666788899999999843


Q ss_pred             cchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHH
Q 024325          151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE  230 (269)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~  230 (269)
                                   +.+..++++-.+|.+++|||+..++.++...+++.+.-.++|++-.+||+|....+-+ +.+..+.+
T Consensus        94 -------------FSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~rdP~-ELLdEiE~  159 (528)
T COG4108          94 -------------FSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGRDPL-ELLDEIEE  159 (528)
T ss_pred             -------------cchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccccCChH-HHHHHHHH
Confidence                         3334444444599999999999999999999999999999999999999998754332 33444444


Q ss_pred             HH
Q 024325          231 SL  232 (269)
Q Consensus       231 ~~  232 (269)
                      .+
T Consensus       160 ~L  161 (528)
T COG4108         160 EL  161 (528)
T ss_pred             Hh
Confidence            44

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.24  E-value=1.4e-10  Score=99.83  Aligned_cols=234  Identities=23%  Similarity=0.298  Sum_probs=139.0

Q ss_pred             hhhhcCCCchhhHHHHHhcCCCcceeeeec-cccccccCCCCCCCCCCChhhhh-------hhhhhh------hchhhhH
Q 024325           12 QFRAIQPSPSILSFVEDNLLGRRRPIELRR-AGYNIELSAPLDNIPFSTSSERE-------RIEENI------FRNKLEF   77 (269)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~e~~~~~~~~~~~-------~i~~~~------~~~~~~~   77 (269)
                      |.+-.+|.+++..++....  +||+.+-+. +-|+++++..+ -+....+++.+       ++.+.+      ++.+-..
T Consensus        66 k~klvnpt~~r~~hlitqM--KWRLrEG~GEAiYeIGVeD~G-~l~GL~deemnaSL~TL~~MA~~lGAs~~vLrek~v~  142 (591)
T KOG1143|consen   66 KAKLVNPTTSRIQHLITQM--KWRLREGQGEAIYEIGVEDGG-ILSGLTDEEMNASLRTLRTMAQALGASMVVLREKDVT  142 (591)
T ss_pred             eeeecCccHHHHHHHHHHH--HhhhhcCCCcEEEEeeeccCc-eeeccCHHHHHHHHHHHHHHHHHhCCceEEEEeeeee
Confidence            4566899999999999888  787755433 13555443321 12223333322       122211      0000000


Q ss_pred             HHhhh-------ccCCCCCCC---CcEEEEEcCCCCChHHHHHHHhcCc-----CccccC-------CCCCceeEeeEEE
Q 024325           78 FAAAK-------VSSSFPAPD---LPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTS-------DKPGLTQTINFFK  135 (269)
Q Consensus        78 ~~~~~-------~~~~~~~~~---~~~v~ivG~~~~GKSsLin~l~~~~-----~~~~~s-------~~~gtt~~~~~~~  135 (269)
                      .....       --++.|.+.   -.+|+++|...+|||||+--|+...     ..+...       -..|.|..+....
T Consensus       143 ~~~~~~R~v~EVLVRKvPd~QqfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~ev  222 (591)
T KOG1143|consen  143 VKGSSRRTVVEVLVRKVPDSQQFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEV  222 (591)
T ss_pred             ccCCCcchhhhhhhhhCCCcccceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhc
Confidence            00000       012233322   2589999999999999998887541     001000       0112222211100


Q ss_pred             ------------------------eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcc--cccceEEEEEeCCCCCC
Q 024325          136 ------------------------LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR--VSLKRVCLLIDTKWGVK  189 (269)
Q Consensus       136 ------------------------~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~vl~vid~~~~~~  189 (269)
                                              ...-++|+|.+|....             ....+..+  -..|..++|+.+..++.
T Consensus       223 lGFd~~g~vVNY~~~~taEEi~e~SSKlvTfiDLAGh~kY-------------~~TTi~gLtgY~Ph~A~LvVsA~~Gi~  289 (591)
T KOG1143|consen  223 LGFDNRGKVVNYAQNMTAEEIVEKSSKLVTFIDLAGHAKY-------------QKTTIHGLTGYTPHFACLVVSADRGIT  289 (591)
T ss_pred             ccccccccccchhhcccHHHHHhhhcceEEEeecccchhh-------------heeeeeecccCCCceEEEEEEcCCCCc
Confidence                                    0123889999997321             11111111  12678899999998998


Q ss_pred             cchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhc-----------------------CCCCCCeEEee
Q 024325          190 PRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN-----------------------NSLVQPVMMVS  246 (269)
Q Consensus       190 ~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~vi~vS  246 (269)
                      ....+.+..+...++|++++++|+|+.++..+.+..+++...+...                       .....|+|.+|
T Consensus       290 ~tTrEHLgl~~AL~iPfFvlvtK~Dl~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vS  369 (591)
T KOG1143|consen  290 WTTREHLGLIAALNIPFFVLVTKMDLVDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVS  369 (591)
T ss_pred             cccHHHHHHHHHhCCCeEEEEEeeccccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEe
Confidence            8889999999999999999999999999977777766666554421                       11246899999


Q ss_pred             CCCCCCHHHHHHHHH
Q 024325          247 SKSGAGIRSLRTVLS  261 (269)
Q Consensus       247 a~~g~gi~~L~~~i~  261 (269)
                      +.+|+|++-|...+.
T Consensus       370 sVsGegl~ll~~fLn  384 (591)
T KOG1143|consen  370 SVSGEGLRLLRTFLN  384 (591)
T ss_pred             ecCccchhHHHHHHh
Confidence            999999998876653

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.24  E-value=2e-10  Score=95.27  Aligned_cols=161  Identities=13%  Similarity=0.102  Sum_probs=87.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE----eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~----~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~  169 (269)
                      +|+++|+.++||||+.+.++++... .-...-+.|.++....    ....+.+||.||........     +..-....+
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p-~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~-----~~~~~~~if   74 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSP-RDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENY-----FNSQREEIF   74 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---G-GGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTT-----HTCCHHHHH
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCc-hhccccCCcCCceEEEEecCCCcEEEEEEcCCcccccccc-----ccccHHHHH
Confidence            5899999999999999999987422 2223334555443322    24579999999986432210     000011222


Q ss_pred             hcccccceEEEEEeCCCCCCcchH----HHHHHHHh--hCCcEEEEEecCCCCCchHHHHHHHHHHHHH----HhcCCCC
Q 024325          170 STRVSLKRVCLLIDTKWGVKPRDH----ELISLMER--SQTKYQVVLTKTDTVFPIDVARRAMQIEESL----KANNSLV  239 (269)
Q Consensus       170 ~~~~~~d~vl~vid~~~~~~~~~~----~~~~~l~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~  239 (269)
                         ..+.+++||+|+.......+.    .++..+.+  .+..+.+.++|+|++.++......+.+.+.+    .......
T Consensus        75 ---~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~  151 (232)
T PF04670_consen   75 ---SNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIED  151 (232)
T ss_dssp             ---CTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TS
T ss_pred             ---hccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccc
Confidence               238999999999733222222    23333333  2567899999999998766555444444333    3221112


Q ss_pred             CCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325          240 QPVMMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       240 ~~vi~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      ..++.+|.-. +.|-+.+..|...+
T Consensus       152 ~~~~~TSI~D-~Sly~A~S~Ivq~L  175 (232)
T PF04670_consen  152 ITFFLTSIWD-ESLYEAWSKIVQKL  175 (232)
T ss_dssp             EEEEEE-TTS-THHHHHHHHHHHTT
T ss_pred             eEEEeccCcC-cHHHHHHHHHHHHH
Confidence            4567777776 46777776666543

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=99.24  E-value=9.8e-11  Score=101.11  Aligned_cols=160  Identities=21%  Similarity=0.257  Sum_probs=109.5

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcCc-C----c-------cccCCCCCceeEeeEEEe---------------------
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQW-G----V-------VRTSDKPGLTQTINFFKL---------------------  136 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~~-~----~-------~~~s~~~gtt~~~~~~~~---------------------  136 (269)
                      .....|+.+|+.++|||||+-.|.-.. +    .       ..-.-..|.|.++.+.-.                     
T Consensus       115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~  194 (527)
T COG5258         115 PEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAA  194 (527)
T ss_pred             CceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhH
Confidence            345689999999999999998876321 0    0       000001233434332211                     


Q ss_pred             -----CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcc--cccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEE
Q 024325          137 -----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR--VSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVV  209 (269)
Q Consensus       137 -----~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv  209 (269)
                           +.-+.|+||.|+.          .|-   +..++.+  ...|..++++.+.++.+....+.+..+.....|+|+|
T Consensus       195 vv~~aDklVsfVDtvGHE----------pwL---rTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVv  261 (527)
T COG5258         195 VVKRADKLVSFVDTVGHE----------PWL---RTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVV  261 (527)
T ss_pred             hhhhcccEEEEEecCCcc----------HHH---HHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEE
Confidence                 1238899999972          221   1222222  2389999999999999999999999998899999999


Q ss_pred             EecCCCCCchHHHHHHHHHHHHHHhcC----------------------CCCCCeEEeeCCCCCCHHHHHHHHHH
Q 024325          210 LTKTDTVFPIDVARRAMQIEESLKANN----------------------SLVQPVMMVSSKSGAGIRSLRTVLSK  262 (269)
Q Consensus       210 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~vi~vSa~~g~gi~~L~~~i~~  262 (269)
                      ++|+|+.+++......+.+...++...                      ....|+|.+|+-+|+|++-|.+.+..
T Consensus       262 vTK~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~  336 (527)
T COG5258         262 VTKIDMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLL  336 (527)
T ss_pred             EEecccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHh
Confidence            999999998777776666665554211                      11468999999999999988776644

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=99.24  E-value=2.2e-11  Score=105.08  Aligned_cols=61  Identities=33%  Similarity=0.573  Sum_probs=54.8

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcc
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAY  152 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~  152 (269)
                      ...+++++|.||+|||||+|+|++. ....+++.||+|++..+...+..+.++||||+..+.
T Consensus       120 ~~~~~~~~G~pnvGKSsliN~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi~~~~  180 (287)
T PRK09563        120 RAIRAMIIGIPNVGKSTLINRLAGK-KIAKTGNRPGVTKAQQWIKLGKGLELLDTPGILWPK  180 (287)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcC-CccccCCCCCeEEEEEEEEeCCcEEEEECCCcCCCC
Confidence            4578999999999999999999998 667899999999999988888889999999997653

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.24  E-value=9.8e-11  Score=110.82  Aligned_cols=130  Identities=18%  Similarity=0.255  Sum_probs=91.1

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcCcC-ccccCCC---------------CCceeE---eeEEEeC-CcEEEEcCCCCC
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQWG-VVRTSDK---------------PGLTQT---INFFKLG-TKLCLVDLPGYG  149 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~-~~~~s~~---------------~gtt~~---~~~~~~~-~~~~lvDtpG~~  149 (269)
                      ....+|+++|+..+|||||..+|+-... +...+..               .|.|-.   +..++.+ ..+++|||||+.
T Consensus         8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHV   87 (697)
T COG0480           8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHV   87 (697)
T ss_pred             ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCcc
Confidence            3456899999999999999988764311 1111111               112211   2334444 889999999985


Q ss_pred             CcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHH
Q 024325          150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE  229 (269)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~  229 (269)
                      +             +..+..+.+..+|.+++|+|+..+..++...+++++...++|.++++||+|....+ .....+.+.
T Consensus        88 D-------------Ft~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a~-~~~~~~~l~  153 (697)
T COG0480          88 D-------------FTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGAD-FYLVVEQLK  153 (697)
T ss_pred             c-------------cHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECccccccC-hhhhHHHHH
Confidence            4             22233333444999999999999999999999999999999999999999998753 444445555


Q ss_pred             HHHH
Q 024325          230 ESLK  233 (269)
Q Consensus       230 ~~~~  233 (269)
                      ..+.
T Consensus       154 ~~l~  157 (697)
T COG0480         154 ERLG  157 (697)
T ss_pred             HHhC
Confidence            5443

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=99.22  E-value=2.7e-11  Score=95.02  Aligned_cols=57  Identities=35%  Similarity=0.499  Sum_probs=50.9

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCC
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY  148 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~  148 (269)
                      ...+++++|.||+|||||+|+|++. ....+++.++||++......+..+.++||||+
T Consensus        99 ~~~~~~~~G~~~~GKstlin~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~liDtPG~  155 (155)
T cd01849          99 KSITVGVIGYPNVGKSSVINALLNK-LKLKVGNVPGTTTSQQEVKLDNKIKLLDTPGI  155 (155)
T ss_pred             cCcEEEEEccCCCCHHHHHHHHHcc-ccccccCCCCcccceEEEEecCCEEEEECCCC
Confidence            4578999999999999999999998 44668899999999988887888999999995

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>cd01859 MJ1464 MJ1464

Probab=99.21  E-value=2e-10  Score=90.13  Aligned_cols=95  Identities=26%  Similarity=0.336  Sum_probs=68.0

Q ss_pred             HHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCC
Q 024325          161 WEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ  240 (269)
Q Consensus       161 ~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  240 (269)
                      |.++.+.+...   +|++++|+|+..+....+..+...+...++|+++|+||+|+.+........ .+    ..  ....
T Consensus         2 ~~~~~~~i~~~---aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~-~~----~~--~~~~   71 (156)
T cd01859           2 WKRLVRRIIKE---SDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPKEVLEKWK-SI----KE--SEGI   71 (156)
T ss_pred             HHHHHHHHHhh---CCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCHHHHHHHH-HH----HH--hCCC
Confidence            44555544443   899999999987666666667666666689999999999997543322111 11    11  1246


Q ss_pred             CeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          241 PVMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       241 ~vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      +++++||++|.|+++|++.|.+.+.
T Consensus        72 ~~~~iSa~~~~gi~~L~~~l~~~~~   96 (156)
T cd01859          72 PVVYVSAKERLGTKILRRTIKELAK   96 (156)
T ss_pred             cEEEEEccccccHHHHHHHHHHHHh
Confidence            8999999999999999999988754

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=99.21  E-value=3.4e-11  Score=92.96  Aligned_cols=55  Identities=38%  Similarity=0.536  Sum_probs=49.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYG  149 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~  149 (269)
                      +++++|.+|+|||||+|+|++. ....++..+|+|++......+..+.+|||||+.
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~  139 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGK-KKVSVSATPGKTKHFQTIFLTPTITLCDCPGLV  139 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC-CceeeCCCCCcccceEEEEeCCCEEEEECCCcC
Confidence            7999999999999999999998 555788999999998887777789999999984

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd01855 YqeH YqeH

Probab=99.20  E-value=2.7e-11  Score=98.21  Aligned_cols=56  Identities=36%  Similarity=0.509  Sum_probs=48.0

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcC-------ccccCCCCCceeEeeEEEeCCcEEEEcCCCC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWG-------VVRTSDKPGLTQTINFFKLGTKLCLVDLPGY  148 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~-------~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~  148 (269)
                      ..++++|.+|+|||||+|+|++...       ...++..||||++...+..+..+.++||||+
T Consensus       128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~DtPG~  190 (190)
T cd01855         128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGNGKKLYDTPGI  190 (190)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCCCCEEEeCcCC
Confidence            5799999999999999999998521       2467889999999988877667999999996

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.20  E-value=2.6e-10  Score=97.10  Aligned_cols=88  Identities=23%  Similarity=0.241  Sum_probs=68.2

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe--------------------CCcEEEEcCCCCCC
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--------------------GTKLCLVDLPGYGF  150 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~--------------------~~~~~lvDtpG~~~  150 (269)
                      +.+.++|||.||+|||||+|+|+.. . +.+.++|++|-|.+....                    ...+.++|++|+-.
T Consensus        19 ~~lkiGIVGlPNvGKST~fnalT~~-~-a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk   96 (391)
T KOG1491|consen   19 NNLKIGIVGLPNVGKSTFFNALTKS-K-AGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK   96 (391)
T ss_pred             CcceeeEeeCCCCchHHHHHHHhcC-C-CCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence            4468999999999999999999998 4 459999999999754432                    22489999999865


Q ss_pred             cchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCC
Q 024325          151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW  186 (269)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~  186 (269)
                      ..+..      ..+.+.|++....+|.++.|+++..
T Consensus        97 GAs~G------~GLGN~FLs~iR~vDaifhVVr~f~  126 (391)
T KOG1491|consen   97 GASAG------EGLGNKFLSHIRHVDAIFHVVRAFE  126 (391)
T ss_pred             CcccC------cCchHHHHHhhhhccceeEEEEecC
Confidence            43222      2455677777778999999998753

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=99.19  E-value=4e-11  Score=102.90  Aligned_cols=60  Identities=32%  Similarity=0.536  Sum_probs=53.6

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCc
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFA  151 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~  151 (269)
                      ...+++++|.||+|||||+|+|++. ....+++.||+|+...+...+..+.++||||+..+
T Consensus       117 ~~~~~~~vG~~nvGKSslin~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPG~~~~  176 (276)
T TIGR03596       117 RPIRAMIVGIPNVGKSTLINRLAGK-KVAKVGNRPGVTKGQQWIKLSDGLELLDTPGILWP  176 (276)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCC-CccccCCCCCeecceEEEEeCCCEEEEECCCcccC
Confidence            3568999999999999999999998 56788999999999988888778999999999654

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.16  E-value=4.3e-11  Score=94.79  Aligned_cols=162  Identities=17%  Similarity=0.180  Sum_probs=89.7

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC----cCccccCCCCCceeEee-EEE-eCCcEEEEcCC-CCCCcchhHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ----WGVVRTSDKPGLTQTIN-FFK-LGTKLCLVDLP-GYGFAYAKEEVKDAWEEL  164 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~----~~~~~~s~~~gtt~~~~-~~~-~~~~~~lvDtp-G~~~~~~~~~~~~~~~~~  164 (269)
                      ...|.+.|++|||||+|+..++..    +.++-+.+.--|..|.. ... .+.++.-+-|- |+.  ...+......+++
T Consensus        13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH--~da~m~~~ai~~l   90 (202)
T COG0378          13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCH--LDASMNLEAIEEL   90 (202)
T ss_pred             eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccC--CcHHHHHHHHHHH
Confidence            358999999999999999887654    22222222222323322 122 45667777777 552  1223333344444


Q ss_pred             HHHHHh----------------cccccc-eEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHH--HHHH
Q 024325          165 VKEYVS----------------TRVSLK-RVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDV--ARRA  225 (269)
Q Consensus       165 ~~~~~~----------------~~~~~d-~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~--~~~~  225 (269)
                      ...+..                .....| .-++|+|...+......-.    ......-++|+||.|+.+..+.  +...
T Consensus        91 ~~~~~~~Dll~iEs~GNL~~~~sp~L~d~~~v~VidvteGe~~P~K~g----P~i~~aDllVInK~DLa~~v~~dlevm~  166 (202)
T COG0378          91 VLDFPDLDLLFIESVGNLVCPFSPDLGDHLRVVVIDVTEGEDIPRKGG----PGIFKADLLVINKTDLAPYVGADLEVMA  166 (202)
T ss_pred             hhcCCcCCEEEEecCcceecccCcchhhceEEEEEECCCCCCCcccCC----CceeEeeEEEEehHHhHHHhCccHHHHH
Confidence            333211                000012 4556666654422111000    0000125799999999875332  4444


Q ss_pred             HHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325          226 MQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       226 ~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      ...++.     ....|++++|+++|+|++++++||....
T Consensus       167 ~da~~~-----np~~~ii~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         167 RDAKEV-----NPEAPIIFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             HHHHHh-----CCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence            443332     2367999999999999999999997654

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=99.12  E-value=7.5e-11  Score=105.24  Aligned_cols=59  Identities=39%  Similarity=0.620  Sum_probs=54.9

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCc
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFA  151 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~  151 (269)
                      ...|++||+||+||||+||+|.|. ....||..||.|++++.......+.|.|+||+..+
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~-KkVsVS~TPGkTKHFQTi~ls~~v~LCDCPGLVfP  372 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGR-KKVSVSSTPGKTKHFQTIFLSPSVCLCDCPGLVFP  372 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcC-ceeeeecCCCCcceeEEEEcCCCceecCCCCcccc
Confidence            578999999999999999999999 56789999999999999999999999999998765

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=6.6e-10  Score=102.20  Aligned_cols=143  Identities=16%  Similarity=0.221  Sum_probs=86.6

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe-----------------------------------------
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-----------------------------------------  131 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~-----------------------------------------  131 (269)
                      .+|+|.|.+++||||++|+++.. ++. ++....||.-.                                         
T Consensus       110 mKV~ifGrts~GKSt~iNAmL~~-klL-P~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~  187 (749)
T KOG0448|consen  110 MKVAIFGRTSAGKSTVINAMLHK-KLL-PSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG  187 (749)
T ss_pred             cEEEEeCCCCCcHHHHHHHHHHH-hhC-cccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence            48999999999999999999976 322 22211111110                                         


Q ss_pred             ------eEEEe------CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHH
Q 024325          132 ------NFFKL------GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLM  199 (269)
Q Consensus       132 ------~~~~~------~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l  199 (269)
                            .++..      ...+.++|.||+.-+...+          ........++|++++|+++...++....+++...
T Consensus       188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~t----------swid~~cldaDVfVlV~NaEntlt~sek~Ff~~v  257 (749)
T KOG0448|consen  188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELT----------SWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKV  257 (749)
T ss_pred             cceEEEEEecCccchhhhccceeccCCCCCCchhhh----------HHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHh
Confidence                  01111      1248999999996542111          1122233349999999999887777788888777


Q ss_pred             HhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcC-----CCCCCeEEeeCCC
Q 024325          200 ERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANN-----SLVQPVMMVSSKS  249 (269)
Q Consensus       200 ~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-----~~~~~vi~vSa~~  249 (269)
                      ...+..+.|+.||+|....+.  +-.+.+.....+..     ....-+++|||+.
T Consensus       258 s~~KpniFIlnnkwDasase~--ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e  310 (749)
T KOG0448|consen  258 SEEKPNIFILNNKWDASASEP--ECKEDVLKQIHELSVVTEKEAADRVFFVSAKE  310 (749)
T ss_pred             hccCCcEEEEechhhhhcccH--HHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence            766555778888999985422  11122222222221     1234589999653

>cd01856 YlqF YlqF

Probab=99.09  E-value=2.8e-10  Score=90.69  Aligned_cols=57  Identities=33%  Similarity=0.584  Sum_probs=50.1

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCC
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY  148 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~  148 (269)
                      ..++++++|.+|+|||||+|+|++. ....+++.+++|.+......+..+.++||||+
T Consensus       114 ~~~~~~~~G~~~vGKstlin~l~~~-~~~~~~~~~~~T~~~~~~~~~~~~~~iDtpG~  170 (171)
T cd01856         114 RGIRAMVVGIPNVGKSTLINRLRGK-KVAKVGNKPGVTKGIQWIKISPGIYLLDTPGI  170 (171)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCC-CceeecCCCCEEeeeEEEEecCCEEEEECCCC
Confidence            4468999999999999999999997 44578899999999987776678999999996

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.09  E-value=3e-10  Score=102.78  Aligned_cols=152  Identities=15%  Similarity=0.121  Sum_probs=94.0

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCC----ceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG----LTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~g----tt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      ..+|+++|..|+||||||-+|+...   .+.++|.    ++-...++.......++||..-...  ..       .+   
T Consensus         9 dVRIvliGD~G~GKtSLImSL~~ee---f~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~--~~-------~l---   73 (625)
T KOG1707|consen    9 DVRIVLIGDEGVGKTSLIMSLLEEE---FVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDD--RL-------CL---   73 (625)
T ss_pred             ceEEEEECCCCccHHHHHHHHHhhh---ccccccccCCccccCCccCcCcCceEEEecccccch--hH-------HH---
Confidence            4689999999999999999999873   3444433    2222344444556899999743211  01       11   


Q ss_pred             HHhcccccceEEEEEeCCCCCC--cchHHHHHHHHh-----hCCcEEEEEecCCCCCchHH--HHHHHHHHHHHHhcCCC
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVK--PRDHELISLMER-----SQTKYQVVLTKTDTVFPIDV--ARRAMQIEESLKANNSL  238 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~--~~~~~~~~~l~~-----~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~  238 (269)
                       ......+|+++++....+..+  .....|+-.+.+     .++|+|+|.||+|.......  +....-+...+.+    
T Consensus        74 -~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~E----  148 (625)
T KOG1707|consen   74 -RKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAE----  148 (625)
T ss_pred             -HHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHH----
Confidence             111223899999987664222  222345555544     46899999999999865332  1111111111211    


Q ss_pred             CCCeEEeeCCCCCCHHHHHHHHHHh
Q 024325          239 VQPVMMVSSKSGAGIRSLRTVLSKI  263 (269)
Q Consensus       239 ~~~vi~vSa~~g~gi~~L~~~i~~~  263 (269)
                      ...+|.+||++-.++.+++-.-...
T Consensus       149 iEtciecSA~~~~n~~e~fYyaqKa  173 (625)
T KOG1707|consen  149 IETCIECSALTLANVSELFYYAQKA  173 (625)
T ss_pred             HHHHHhhhhhhhhhhHhhhhhhhhe
Confidence            2457999999999999998765543

>cd01858 NGP_1 NGP-1

Probab=99.07  E-value=6.6e-10  Score=87.29  Aligned_cols=87  Identities=18%  Similarity=0.135  Sum_probs=63.3

Q ss_pred             ccccceEEEEEeCCCCCCcchHHHHHHHHhh--CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCC
Q 024325          172 RVSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS  249 (269)
Q Consensus       172 ~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~  249 (269)
                      +..+|++++|+|++.+....+..+.+.+...  ++|+++|+||+|+.++.+.......+.    ..  ....++++||++
T Consensus         6 l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~----~~--~~~~~~~iSa~~   79 (157)
T cd01858           6 IDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILS----KE--YPTIAFHASINN   79 (157)
T ss_pred             hhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHh----cC--CcEEEEEeeccc
Confidence            3449999999999887767777777777653  489999999999986544332222222    11  112268899999


Q ss_pred             CCCHHHHHHHHHHhh
Q 024325          250 GAGIRSLRTVLSKIA  264 (269)
Q Consensus       250 g~gi~~L~~~i~~~~  264 (269)
                      +.|+++|++.|.+.+
T Consensus        80 ~~~~~~L~~~l~~~~   94 (157)
T cd01858          80 PFGKGSLIQLLRQFS   94 (157)
T ss_pred             cccHHHHHHHHHHHH
Confidence            999999999998764

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>PRK13796 GTPase YqeH; Provisional

Probab=99.07  E-value=1.8e-10  Score=102.48  Aligned_cols=58  Identities=31%  Similarity=0.412  Sum_probs=48.9

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCc----CccccCCCCCceeEeeEEEeCCcEEEEcCCCCCC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQW----GVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGF  150 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~----~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~  150 (269)
                      ..++++|.||+|||||||+|++..    ....+++.||||++...+..+....++||||+..
T Consensus       161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~~~l~DTPGi~~  222 (365)
T PRK13796        161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDGSFLYDTPGIIH  222 (365)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCCcEEEECCCccc
Confidence            479999999999999999998542    2355899999999998887766679999999954

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=99.07  E-value=1.2e-09  Score=100.17  Aligned_cols=112  Identities=18%  Similarity=0.227  Sum_probs=78.8

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCC------C---------CCceeEe----eEEE----eCCcEEEEcCCCC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD------K---------PGLTQTI----NFFK----LGTKLCLVDLPGY  148 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~------~---------~gtt~~~----~~~~----~~~~~~lvDtpG~  148 (269)
                      ..+|+++|+-.+|||+|+..|........-.+      +         .|++-..    .+..    ..+-++++||||+
T Consensus       128 irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGH  207 (971)
T KOG0468|consen  128 IRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGH  207 (971)
T ss_pred             EEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCc
Confidence            46899999999999999999987631111000      0         1111111    0111    1234889999997


Q ss_pred             CCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCC
Q 024325          149 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  216 (269)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~  216 (269)
                      -.             ++.+....+..+|++++|+|+..+..-...++++...+.+.|+.+|+||+|++
T Consensus       208 Vn-------------F~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRL  262 (971)
T KOG0468|consen  208 VN-------------FSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRL  262 (971)
T ss_pred             cc-------------chHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHH
Confidence            32             23333344445999999999999999999999999999999999999999986

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=99.05  E-value=3.2e-09  Score=89.77  Aligned_cols=134  Identities=21%  Similarity=0.231  Sum_probs=81.0

Q ss_pred             CCchhhHHHHHhcCCCcceeeeeccccccccCC-------CCCCCCCCChhhhhhhhh----hhhchhhhHHHhhhccCC
Q 024325           18 PSPSILSFVEDNLLGRRRPIELRRAGYNIELSA-------PLDNIPFSTSSERERIEE----NIFRNKLEFFAAAKVSSS   86 (269)
Q Consensus        18 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~e~~~~~~~~~~~~i~~----~~~~~~~~~~~~~~~~~~   86 (269)
                      |..+++..+...+.-+.+++.++++++......       ......+..-.+......    .+.. .+..+.....+-.
T Consensus        59 PLssrn~~~~~~~~~k~riiVlNK~DLad~~~~k~~iq~~~~~~~~~~~~~~c~~~~~~~v~~l~~-il~~~~~~l~r~i  137 (335)
T KOG2485|consen   59 PLSSRNELFQDFLPPKPRIIVLNKMDLADPKEQKKIIQYLEWQNLESYIKLDCNKDCNKQVSPLLK-ILTILSEELVRFI  137 (335)
T ss_pred             CCccccHHHHHhcCCCceEEEEecccccCchhhhHHHHHHHhhcccchhhhhhhhhhhhccccHHH-HHHHHHHHHHHhh
Confidence            667788888888888999999999775421000       001111111111111111    1111 1111111112222


Q ss_pred             CCCCCCcEEEEEcCCCCChHHHHHHHhcC----cCccccCCCCCceeEeeE---EEeCCcEEEEcCCCCCCcc
Q 024325           87 FPAPDLPEIAFAGRSNVGKSSMLNALTRQ----WGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAY  152 (269)
Q Consensus        87 ~~~~~~~~v~ivG~~~~GKSsLin~l~~~----~~~~~~s~~~gtt~~~~~---~~~~~~~~lvDtpG~~~~~  152 (269)
                      +.....+.|.++|-||+|||||+|++...    ...+.+++.||.|+.+..   ....+.+.++||||+..+.
T Consensus       138 rt~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~  210 (335)
T KOG2485|consen  138 RTLNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPS  210 (335)
T ss_pred             cccCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCCC
Confidence            22345689999999999999999986542    256789999999999853   2347779999999997763

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.05  E-value=8e-09  Score=78.32  Aligned_cols=154  Identities=18%  Similarity=0.171  Sum_probs=99.0

Q ss_pred             CcEEEEEcCCCCChHHHHHHHh-cCcCccccCCCCCceeEeeEEEe------CCcEEEEcCCCCCCcchhHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALT-RQWGVVRTSDKPGLTQTINFFKL------GTKLCLVDLPGYGFAYAKEEVKDAWEEL  164 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~-~~~~~~~~s~~~gtt~~~~~~~~------~~~~~lvDtpG~~~~~~~~~~~~~~~~~  164 (269)
                      .-+|+++|.-++|||+++..|+ +.+  ..-.....|..|+-....      ...+.+.||+|+...         ..++
T Consensus         9 ~~kVvVcG~k~VGKTaileQl~yg~~--~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~---------~~eL   77 (198)
T KOG3883|consen    9 VCKVVVCGMKSVGKTAILEQLLYGNH--VPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGG---------QQEL   77 (198)
T ss_pred             ceEEEEECCccccHHHHHHHHHhccC--CCCCccccchhhheeEeeecCCChhheEEEeecccccCc---------hhhh
Confidence            3479999999999999998765 442  333444456666543332      235899999998543         1344


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCcchHHHHH-HHHh----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCC
Q 024325          165 VKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS-LMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLV  239 (269)
Q Consensus       165 ~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~-~l~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  239 (269)
                      .+.|++.   +|+.++|.++.+.-..+-.++++ ++..    ..+|+++..||+|+..+.+.......   .+  .....
T Consensus        78 prhy~q~---aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~---~W--a~rEk  149 (198)
T KOG3883|consen   78 PRHYFQF---ADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQ---IW--AKREK  149 (198)
T ss_pred             hHhHhcc---CceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHH---HH--Hhhhh
Confidence            5566555   89999999876432222222222 2322    24799999999999766443221111   11  11123


Q ss_pred             CCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325          240 QPVMMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       240 ~~vi~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      ...+.|+|.....+-+.+..+...+
T Consensus       150 vkl~eVta~dR~sL~epf~~l~~rl  174 (198)
T KOG3883|consen  150 VKLWEVTAMDRPSLYEPFTYLASRL  174 (198)
T ss_pred             eeEEEEEeccchhhhhHHHHHHHhc
Confidence            5689999999999999999887654

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.05  E-value=6.2e-10  Score=89.18  Aligned_cols=151  Identities=14%  Similarity=0.077  Sum_probs=92.9

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeE-----eeEE-EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-----INFF-KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~-----~~~~-~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      .++++||..++|||+|+-.....   .+...+.+|.-|     +... .....+.+|||+|..+.       +..+-+  
T Consensus         5 ~K~VvVGDga~GKT~ll~~~t~~---~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedY-------DrlRpl--   72 (198)
T KOG0393|consen    5 IKCVVVGDGAVGKTCLLISYTTN---AFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDY-------DRLRPL--   72 (198)
T ss_pred             eEEEEECCCCcCceEEEEEeccC---cCcccccCeEEccceEEEEecCCCEEEEeeeecCCCccc-------cccccc--
Confidence            58999999999999999887765   344444433332     2221 22345789999997542       110101  


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcc--hHHHHHHHHhh--CCcEEEEEecCCCCCchHHHHHH-------------HHHH
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPR--DHELISLMERS--QTKYQVVLTKTDTVFPIDVARRA-------------MQIE  229 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~--~~~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~~~-------------~~~~  229 (269)
                          .-..+|+++++++...+.+..  ...++-.+..+  +.|+++|.+|.||.+.....+..             ..+.
T Consensus        73 ----sY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA  148 (198)
T KOG0393|consen   73 ----SYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELA  148 (198)
T ss_pred             ----CCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHH
Confidence                223478887777655432222  23444455544  58999999999999543211111             1111


Q ss_pred             HHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325          230 ESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       230 ~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      +.+     ....++++||++..|+.+.|+......
T Consensus       149 ~~i-----ga~~y~EcSa~tq~~v~~vF~~a~~~~  178 (198)
T KOG0393|consen  149 KEI-----GAVKYLECSALTQKGVKEVFDEAIRAA  178 (198)
T ss_pred             HHh-----CcceeeeehhhhhCCcHHHHHHHHHHH
Confidence            111     136789999999999999998876654

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.05  E-value=1.4e-09  Score=83.51  Aligned_cols=154  Identities=16%  Similarity=0.178  Sum_probs=92.9

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCC-CCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK-PGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST  171 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~-~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~  171 (269)
                      -+++++|--|||||||++.|-.. +...--+. -+|+.....  .+.+++.+|..|...      .+..|.+...     
T Consensus        21 gKllFlGLDNAGKTTLLHMLKdD-rl~qhvPTlHPTSE~l~I--g~m~ftt~DLGGH~q------Arr~wkdyf~-----   86 (193)
T KOG0077|consen   21 GKLLFLGLDNAGKTTLLHMLKDD-RLGQHVPTLHPTSEELSI--GGMTFTTFDLGGHLQ------ARRVWKDYFP-----   86 (193)
T ss_pred             ceEEEEeecCCchhhHHHHHccc-cccccCCCcCCChHHhee--cCceEEEEccccHHH------HHHHHHHHHh-----
Confidence            37999999999999999999886 43322221 223333333  266789999999622      2334444333     


Q ss_pred             ccccceEEEEEeCCCC--CCcchHH---HHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCC---------
Q 024325          172 RVSLKRVCLLIDTKWG--VKPRDHE---LISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNS---------  237 (269)
Q Consensus       172 ~~~~d~vl~vid~~~~--~~~~~~~---~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~---------  237 (269)
                        .+|.+++++|+.+.  +.+...+   ++..-.-...|+++..||+|...+....+ .............         
T Consensus        87 --~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~-l~~~l~l~~~t~~~~~v~~~~~  163 (193)
T KOG0077|consen   87 --QVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDE-LRFHLGLSNFTTGKGKVNLTDS  163 (193)
T ss_pred             --hhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHH-HHHHHHHHHHhcccccccccCC
Confidence              39999999998742  2221111   11111225799999999999987653222 2221111221111         


Q ss_pred             --CCCCeEEeeCCCCCCHHHHHHHHHHh
Q 024325          238 --LVQPVMMVSSKSGAGIRSLRTVLSKI  263 (269)
Q Consensus       238 --~~~~vi~vSa~~g~gi~~L~~~i~~~  263 (269)
                        ....++.+|...+.|..+-+.|+...
T Consensus       164 ~~rp~evfmcsi~~~~gy~e~fkwl~qy  191 (193)
T KOG0077|consen  164 NVRPLEVFMCSIVRKMGYGEGFKWLSQY  191 (193)
T ss_pred             CCCeEEEEEEEEEccCccceeeeehhhh
Confidence              12346888988888877777776654

>PRK12289 GTPase RsgA; Reviewed

Probab=99.04  E-value=5.2e-10  Score=98.61  Aligned_cols=57  Identities=33%  Similarity=0.482  Sum_probs=48.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCC-------ceeEeeEEEeCCcEEEEcCCCCCCc
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG-------LTQTINFFKLGTKLCLVDLPGYGFA  151 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~g-------tt~~~~~~~~~~~~~lvDtpG~~~~  151 (269)
                      .++|+|.+|+|||||||+|++. ....++.+++       ||++...+.......++||||+...
T Consensus       174 i~v~iG~SgVGKSSLIN~L~~~-~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~~liDTPG~~~~  237 (352)
T PRK12289        174 ITVVAGPSGVGKSSLINRLIPD-VELRVGKVSGKLGRGRHTTRHVELFELPNGGLLADTPGFNQP  237 (352)
T ss_pred             eEEEEeCCCCCHHHHHHHHcCc-cccccccccCCCCCCCCcCceeEEEECCCCcEEEeCCCcccc
Confidence            5899999999999999999987 4567788888       8999988776444589999999765

>cd01859 MJ1464 MJ1464

Probab=99.03  E-value=8.1e-10  Score=86.61  Aligned_cols=56  Identities=38%  Similarity=0.574  Sum_probs=49.0

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY  148 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~  148 (269)
                      ..+++++|.+|+|||||+|+|.+. ....+++.+|+|.+..+...+..+.+|||||+
T Consensus       101 ~~~~~~ig~~~~Gkssl~~~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~DtpGi  156 (156)
T cd01859         101 EGKVGVVGYPNVGKSSIINALKGR-HSASTSPSPGYTKGEQLVKITSKIYLLDTPGV  156 (156)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC-CccccCCCCCeeeeeEEEEcCCCEEEEECcCC
Confidence            457899999999999999999987 45677889999988887777778999999995

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PRK12288 GTPase RsgA; Reviewed

Probab=99.02  E-value=6.6e-10  Score=97.90  Aligned_cols=71  Identities=28%  Similarity=0.357  Sum_probs=51.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCC-------ceeEeeEEEeCCcEEEEcCCCCCCcc----hhHHHHHHHH
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG-------LTQTINFFKLGTKLCLVDLPGYGFAY----AKEEVKDAWE  162 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~g-------tt~~~~~~~~~~~~~lvDtpG~~~~~----~~~~~~~~~~  162 (269)
                      .++|+|.+|+|||||||+|++. ....++.+++       ||+...++..+....++||||+.+-.    ..+++...|.
T Consensus       207 i~~~vG~sgVGKSTLiN~Ll~~-~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~~liDTPGir~~~l~~~~~~~l~~~F~  285 (347)
T PRK12288        207 ISIFVGQSGVGKSSLINALLPE-AEILVGDVSDNSGLGQHTTTAARLYHFPHGGDLIDSPGVREFGLWHLEPEQVTQGFV  285 (347)
T ss_pred             CEEEECCCCCCHHHHHHHhccc-cceeeccccCcCCCCcCceeeEEEEEecCCCEEEECCCCCcccCCCCCHHHHHHhhH
Confidence            4899999999999999999987 4456666654       78888777765456799999997642    2344555555


Q ss_pred             HHH
Q 024325          163 ELV  165 (269)
Q Consensus       163 ~~~  165 (269)
                      ++.
T Consensus       286 ei~  288 (347)
T PRK12288        286 EFR  288 (347)
T ss_pred             HHH
Confidence            543

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.98  E-value=3.9e-09  Score=82.74  Aligned_cols=82  Identities=17%  Similarity=0.232  Sum_probs=59.3

Q ss_pred             ceEEEEEeCCCCCCcchHHHH-HHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHH
Q 024325          176 KRVCLLIDTKWGVKPRDHELI-SLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIR  254 (269)
Q Consensus       176 d~vl~vid~~~~~~~~~~~~~-~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~  254 (269)
                      |++++|+|+..+....+..+. ..+...++|+++|+||+|+.+..+.......+    ...  ...+++++||++|.|++
T Consensus         1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~----~~~--~~~~ii~vSa~~~~gi~   74 (155)
T cd01849           1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPKEVLRKWLAYL----RHS--YPTIPFKISATNGQGIE   74 (155)
T ss_pred             CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCCHHHHHHHHHHH----Hhh--CCceEEEEeccCCcChh
Confidence            689999999876666655555 45566789999999999997654332222222    111  14678999999999999


Q ss_pred             HHHHHHHHh
Q 024325          255 SLRTVLSKI  263 (269)
Q Consensus       255 ~L~~~i~~~  263 (269)
                      +|.+.|...
T Consensus        75 ~L~~~i~~~   83 (155)
T cd01849          75 KKESAFTKQ   83 (155)
T ss_pred             hHHHHHHHH
Confidence            999988654

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.98  E-value=4.5e-09  Score=97.66  Aligned_cols=112  Identities=20%  Similarity=0.190  Sum_probs=81.5

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee------------------EEEeCCcEEEEcCCCCCCc
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN------------------FFKLGTKLCLVDLPGYGFA  151 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~------------------~~~~~~~~~lvDtpG~~~~  151 (269)
                      .+..+++++-+...|||||..+|+... ..+-+...|.-|-+.                  ....+..+++||+||+.+-
T Consensus         7 ~~irn~~~vahvdhgktsladsl~asn-gvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf   85 (887)
T KOG0467|consen    7 EGIRNICLVAHVDHGKTSLADSLVASN-GVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDF   85 (887)
T ss_pred             CceeEEEEEEEecCCccchHHHHHhhc-cEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccch
Confidence            445689999999999999999998763 233333444332211                  1223667999999998542


Q ss_pred             chhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCC
Q 024325          152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDT  215 (269)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl  215 (269)
                                   .....+....+|..++++|+-.|...+...++.+.-..+..+++|+||+|.
T Consensus        86 -------------~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidr  136 (887)
T KOG0467|consen   86 -------------SSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDR  136 (887)
T ss_pred             -------------hhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhh
Confidence                         122222233489999999999999999999998777778899999999994

>cd01855 YqeH YqeH

Probab=98.96  E-value=7.6e-09  Score=83.84  Aligned_cols=91  Identities=16%  Similarity=0.046  Sum_probs=58.6

Q ss_pred             ccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHH--HHHHhcCCCCCCeEEeeCCC
Q 024325          172 RVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE--ESLKANNSLVQPVMMVSSKS  249 (269)
Q Consensus       172 ~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~--~~~~~~~~~~~~vi~vSa~~  249 (269)
                      ...+|++++|+|+..........+  .....++|+++|+||+|+.+..........+.  ...........+++++||++
T Consensus        32 ~~~ad~il~VvD~~~~~~~~~~~l--~~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSA~~  109 (190)
T cd01855          32 SPKKALVVHVVDIFDFPGSLIPRL--RLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKDVILISAKK  109 (190)
T ss_pred             ccCCcEEEEEEECccCCCccchhH--HHhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcccEEEEECCC
Confidence            344999999999986544443343  12234689999999999985433222222221  01111111124689999999


Q ss_pred             CCCHHHHHHHHHHhh
Q 024325          250 GAGIRSLRTVLSKIA  264 (269)
Q Consensus       250 g~gi~~L~~~i~~~~  264 (269)
                      |+|+++|+++|.+.+
T Consensus       110 ~~gi~eL~~~l~~~l  124 (190)
T cd01855         110 GWGVEELINAIKKLA  124 (190)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998865

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.95  E-value=1.6e-09  Score=91.20  Aligned_cols=70  Identities=29%  Similarity=0.424  Sum_probs=48.8

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCC-------CceeEeeEEEeCCcEEEEcCCCCCCc----chhHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-------GLTQTINFFKLGTKLCLVDLPGYGFA----YAKEEVKDAW  161 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~-------gtt~~~~~~~~~~~~~lvDtpG~~~~----~~~~~~~~~~  161 (269)
                      ..++++|.+|+|||||+|+|.+.. ...+++.+       .||++...+..+ ...++||||+...    ...+++...+
T Consensus       121 ~~~~~~G~sgvGKStLiN~L~~~~-~~~t~~i~~~~~~G~hTT~~~~l~~l~-~~~liDtPG~~~~~l~~~~~~~~~~~f  198 (245)
T TIGR00157       121 RISVFAGQSGVGKSSLINALDPSV-KQQVNDISSKLGLGKHTTTHVELFHFH-GGLIADTPGFNEFGLWHLEPEQLTQGF  198 (245)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhhh-hccccceeccCCCCCCcCCceEEEEcC-CcEEEeCCCccccCCCCCCHHHHHHhC
Confidence            378999999999999999999873 33444333       388888766653 3589999999763    2234454444


Q ss_pred             HHH
Q 024325          162 EEL  164 (269)
Q Consensus       162 ~~~  164 (269)
                      .++
T Consensus       199 ~e~  201 (245)
T TIGR00157       199 VEF  201 (245)
T ss_pred             HHH
Confidence            444

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>TIGR00092 GTP-binding protein YchF

Probab=98.95  E-value=1.4e-09  Score=95.68  Aligned_cols=86  Identities=21%  Similarity=0.142  Sum_probs=63.9

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe--------------------CCcEEEEcCCCCCCcc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--------------------GTKLCLVDLPGYGFAY  152 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~--------------------~~~~~lvDtpG~~~~~  152 (269)
                      ..++++|.||+|||||+|+|++. ....++++|+||.+.+....                    ...+.++|.||+....
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~-~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA   81 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNL-LGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA   81 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCC-CccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence            47999999999999999999998 43378899999887643211                    1258999999996542


Q ss_pred             hhHHHHHHHHHHHHHHHhcccccceEEEEEeCC
Q 024325          153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK  185 (269)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~  185 (269)
                      +..      ..+...++.....+|++++|+++.
T Consensus        82 s~g------~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        82 SKG------EGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             hcc------cCcchHHHHHHHhCCEEEEEEeCC
Confidence            211      123445666666799999999985

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.95  E-value=6.2e-10  Score=86.89  Aligned_cols=58  Identities=33%  Similarity=0.422  Sum_probs=39.1

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCcccc---CCC----CCceeEeeEEEeCCcEEEEcCCCCCCc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRT---SDK----PGLTQTINFFKLGTKLCLVDLPGYGFA  151 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~---s~~----~gtt~~~~~~~~~~~~~lvDtpG~~~~  151 (269)
                      ..++++|++|||||||+|+|++.. ...+   +..    ..||+....+..+....++||||+.+.
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~-~~~t~~is~~~~rGkHTTt~~~l~~l~~g~~iIDTPGf~~~  100 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEA-KQKTGEISEKTGRGKHTTTHRELFPLPDGGYIIDTPGFRSF  100 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS-----S--------------SEEEEEETTSEEEECSHHHHT-
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhc-chhhhhhhcccCCCcccCCCeeEEecCCCcEEEECCCCCcc
Confidence            479999999999999999999973 2222   222    226677777777677899999998654

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>cd01856 YlqF YlqF

Probab=98.95  E-value=9.1e-09  Score=81.97  Aligned_cols=90  Identities=19%  Similarity=0.254  Sum_probs=62.9

Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEe
Q 024325          166 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV  245 (269)
Q Consensus       166 ~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v  245 (269)
                      ++......++|++++|+|++.+....+..++..+  .++|+++|+||+|+.++.......+    .+..   ...+++.+
T Consensus        11 ~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~----~~~~---~~~~vi~i   81 (171)
T cd01856          11 RQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPRIIVLNKADLADPKKTKKWLK----YFES---KGEKVLFV   81 (171)
T ss_pred             HHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCCEEEEEehhhcCChHHHHHHHH----HHHh---cCCeEEEE
Confidence            3334445569999999999876665555555544  2579999999999975533222111    1111   13568999


Q ss_pred             eCCCCCCHHHHHHHHHHhh
Q 024325          246 SSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       246 Sa~~g~gi~~L~~~i~~~~  264 (269)
                      ||+++.|+++|.+.|...+
T Consensus        82 Sa~~~~gi~~L~~~l~~~l  100 (171)
T cd01856          82 NAKSGKGVKKLLKAAKKLL  100 (171)
T ss_pred             ECCCcccHHHHHHHHHHHH
Confidence            9999999999999998764

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=98.92  E-value=3e-08  Score=84.76  Aligned_cols=144  Identities=20%  Similarity=0.265  Sum_probs=104.5

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCc---C-----------ccccCCCCCceeEe---eEEEeCCcEEEEcCCCCCCcchh
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQW---G-----------VVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAK  154 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~---~-----------~~~~s~~~gtt~~~---~~~~~~~~~~lvDtpG~~~~~~~  154 (269)
                      -.+|.-+|+...|||||-.+++...   .           .++-....|.|-+.   .+.+....+--+|+||+      
T Consensus        54 HvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGH------  127 (449)
T KOG0460|consen   54 HVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGH------  127 (449)
T ss_pred             cccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCch------
Confidence            3579999999999999998877421   0           01112233455443   34444667888999997      


Q ss_pred             HHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCc-EEEEEecCCCCCch-HHHHHHHHHHHHH
Q 024325          155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPI-DVARRAMQIEESL  232 (269)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p-~iiv~NK~Dl~~~~-~~~~~~~~~~~~~  232 (269)
                             .++++..+......|..++|+.+.++..++..+.+-+.++.+++ +++.+||.|++++. .++-...++++.+
T Consensus       128 -------ADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RElL  200 (449)
T KOG0460|consen  128 -------ADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRELL  200 (449)
T ss_pred             -------HHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCHHHHHHHHHHHHHHH
Confidence                   56677888888889999999999999999998888778887875 67789999999544 4444556677777


Q ss_pred             Hhc--CCCCCCeEEeeCC
Q 024325          233 KAN--NSLVQPVMMVSSK  248 (269)
Q Consensus       233 ~~~--~~~~~~vi~vSa~  248 (269)
                      ..+  .....|++.=||+
T Consensus       201 se~gf~Gd~~PvI~GSAL  218 (449)
T KOG0460|consen  201 SEFGFDGDNTPVIRGSAL  218 (449)
T ss_pred             HHcCCCCCCCCeeecchh
Confidence            665  3456788876664

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.87  E-value=2.8e-08  Score=85.26  Aligned_cols=90  Identities=14%  Similarity=0.189  Sum_probs=65.5

Q ss_pred             HHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEee
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS  246 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vS  246 (269)
                      .....+..+|++++|+|+..+....+..+.+.+.  ++|+++|+||+|+.++.......+.+    ..   ...+++++|
T Consensus        14 ~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~--~kp~IiVlNK~DL~~~~~~~~~~~~~----~~---~~~~vi~iS   84 (276)
T TIGR03596        14 EIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRG--NKPRLIVLNKADLADPAVTKQWLKYF----EE---KGIKALAIN   84 (276)
T ss_pred             HHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHHC--CCCEEEEEEccccCCHHHHHHHHHHH----HH---cCCeEEEEE
Confidence            3344455599999999998777777766666553  68999999999997654333222222    11   135789999


Q ss_pred             CCCCCCHHHHHHHHHHhhh
Q 024325          247 SKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       247 a~~g~gi~~L~~~i~~~~~  265 (269)
                      |+++.|+++|.+.|.+.+.
T Consensus        85 a~~~~gi~~L~~~i~~~~~  103 (276)
T TIGR03596        85 AKKGKGVKKIIKAAKKLLK  103 (276)
T ss_pred             CCCcccHHHHHHHHHHHHH
Confidence            9999999999999887654

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.86  E-value=1.6e-08  Score=77.98  Aligned_cols=76  Identities=16%  Similarity=0.079  Sum_probs=55.4

Q ss_pred             hcccccceEEEEEeCCCCCCcchHHHHHHHHhh--CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeC
Q 024325          170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS  247 (269)
Q Consensus       170 ~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa  247 (269)
                      .....+|++++|+|+..+....+..+.+.+...  ++|+++|+||+|+.++.......+    .+..   ...+++++||
T Consensus         7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~----~~~~---~~~~ii~iSa   79 (141)
T cd01857           7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAE----YFKK---EGIVVVFFSA   79 (141)
T ss_pred             HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHH----HHHh---cCCeEEEEEe
Confidence            334459999999999887777777888888765  799999999999976543322222    2222   1367899999


Q ss_pred             CCCCC
Q 024325          248 KSGAG  252 (269)
Q Consensus       248 ~~g~g  252 (269)
                      +++.+
T Consensus        80 ~~~~~   84 (141)
T cd01857          80 LKENA   84 (141)
T ss_pred             cCCCc
Confidence            98864

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PRK00098 GTPase RsgA; Reviewed

Probab=98.86  E-value=8.8e-09  Score=89.33  Aligned_cols=57  Identities=32%  Similarity=0.503  Sum_probs=44.2

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCC-------ceeEeeEEEeCCcEEEEcCCCCCC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG-------LTQTINFFKLGTKLCLVDLPGYGF  150 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~g-------tt~~~~~~~~~~~~~lvDtpG~~~  150 (269)
                      ..++++|++|+|||||+|+|++.. ...++..++       ||+....+..+....++||||+..
T Consensus       165 k~~~~~G~sgvGKStlin~l~~~~-~~~~g~v~~~~~~G~htT~~~~~~~~~~~~~~~DtpG~~~  228 (298)
T PRK00098        165 KVTVLAGQSGVGKSTLLNALAPDL-ELKTGEISEALGRGKHTTTHVELYDLPGGGLLIDTPGFSS  228 (298)
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCc-CCCCcceeccCCCCCcccccEEEEEcCCCcEEEECCCcCc
Confidence            479999999999999999999873 344444443       777777766655579999999974

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=98.86  E-value=1.4e-08  Score=87.88  Aligned_cols=111  Identities=21%  Similarity=0.206  Sum_probs=80.4

Q ss_pred             EEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCch
Q 024325          140 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPI  219 (269)
Q Consensus       140 ~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~  219 (269)
                      ++|+|.+|.....         ...  -|-.+-.-.|...+++-+..++-....+.+.......+|+++|++|+|..++.
T Consensus       221 iTFIDLAGHEkYL---------KTT--vFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDMCPAN  289 (641)
T KOG0463|consen  221 ITFIDLAGHEKYL---------KTT--VFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDMCPAN  289 (641)
T ss_pred             EEEEeccchhhhh---------hee--eeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeeccCcHH
Confidence            7899999962210         000  11112223678888888887777777888888778899999999999999988


Q ss_pred             HHHHHHHHHHHHHHhcC-----------------------CCCCCeEEeeCCCCCCHHHHHHHHH
Q 024325          220 DVARRAMQIEESLKANN-----------------------SLVQPVMMVSSKSGAGIRSLRTVLS  261 (269)
Q Consensus       220 ~~~~~~~~~~~~~~~~~-----------------------~~~~~vi~vSa~~g~gi~~L~~~i~  261 (269)
                      -+.+.++.+.+.++...                       ...+|+|.||..+|+|++-|...+.
T Consensus       290 iLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFLN  354 (641)
T KOG0463|consen  290 ILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFLN  354 (641)
T ss_pred             HHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHHh
Confidence            87777777766665411                       0146899999999999998887764

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.84  E-value=2.2e-08  Score=83.31  Aligned_cols=90  Identities=19%  Similarity=0.090  Sum_probs=58.2

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcCc-CccccCCCCCceeEeeEEEe------CCcEEEEcCCCCCCcchhH-HHHHHH
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFKL------GTKLCLVDLPGYGFAYAKE-EVKDAW  161 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~~-~~~~~s~~~gtt~~~~~~~~------~~~~~lvDtpG~~~~~~~~-~~~~~~  161 (269)
                      .+...|+++|++++|||||+|.|++.. ........+.||+.+-.+..      +..+.++||||+.+....+ ......
T Consensus         5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~   84 (224)
T cd01851           5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL   84 (224)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence            345689999999999999999999972 22333445678887654432      3679999999997753322 111111


Q ss_pred             HHHHHHHHhcccccceEEEEEeCC
Q 024325          162 EELVKEYVSTRVSLKRVCLLIDTK  185 (269)
Q Consensus       162 ~~~~~~~~~~~~~~d~vl~vid~~  185 (269)
                      ..+     ..+ .++++++.++..
T Consensus        85 ~~l-----~~l-lss~~i~n~~~~  102 (224)
T cd01851          85 FAL-----ATL-LSSVLIYNSWET  102 (224)
T ss_pred             HHH-----HHH-HhCEEEEeccCc
Confidence            111     111 278888888764

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>KOG2484 consensus GTPase [General function prediction only]

Probab=98.82  E-value=2.6e-09  Score=92.86  Aligned_cols=60  Identities=33%  Similarity=0.518  Sum_probs=55.3

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCc
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFA  151 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~  151 (269)
                      ..++|+|+|+||+||||+||+|... ....+++.||.|+.+.....+..+.|+|.||+...
T Consensus       251 ~sIrvGViG~PNVGKSSvINsL~~~-k~C~vg~~pGvT~smqeV~Ldk~i~llDsPgiv~~  310 (435)
T KOG2484|consen  251 TSIRVGIIGYPNVGKSSVINSLKRR-KACNVGNVPGVTRSMQEVKLDKKIRLLDSPGIVPP  310 (435)
T ss_pred             cceEeeeecCCCCChhHHHHHHHHh-ccccCCCCccchhhhhheeccCCceeccCCceeec
Confidence            4579999999999999999999998 67899999999999999999999999999998654

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.81  E-value=4.2e-08  Score=99.25  Aligned_cols=128  Identities=19%  Similarity=0.195  Sum_probs=79.7

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHhcCc-Cccc---cC--CCCCceeEeeEEEeCCcEEEEcCCCCCCcchh--HHHHHH
Q 024325           89 APDLPEIAFAGRSNVGKSSMLNALTRQW-GVVR---TS--DKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK--EEVKDA  160 (269)
Q Consensus        89 ~~~~~~v~ivG~~~~GKSsLin~l~~~~-~~~~---~s--~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~--~~~~~~  160 (269)
                      ....|+.+++|++|+||||+|+.. |-. ....   ..  ...+-|++|.++. ....+++||+|.......  +.....
T Consensus       108 lY~LPWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf-~~~avliDtaG~y~~~~~~~~~~~~~  185 (1169)
T TIGR03348       108 LYDLPWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWF-TDEAVLIDTAGRYTTQDSDPEEDAAA  185 (1169)
T ss_pred             hhcCCCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEe-cCCEEEEcCCCccccCCCcccccHHH
Confidence            357799999999999999999875 221 1110   01  1134466777654 445789999996543211  122345


Q ss_pred             HHHHHHHHHhcc--cccceEEEEEeCCCCCCcchH---H-------HHHHHHh---hCCcEEEEEecCCCCCc
Q 024325          161 WEELVKEYVSTR--VSLKRVCLLIDTKWGVKPRDH---E-------LISLMER---SQTKYQVVLTKTDTVFP  218 (269)
Q Consensus       161 ~~~~~~~~~~~~--~~~d~vl~vid~~~~~~~~~~---~-------~~~~l~~---~~~p~iiv~NK~Dl~~~  218 (269)
                      |..+.....+..  ..++.||+++|.+.-+.....   .       -++.+..   ...|+.+|+||||++..
T Consensus       186 W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~G  258 (1169)
T TIGR03348       186 WLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAG  258 (1169)
T ss_pred             HHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhcC
Confidence            777766554442  358999999998753332221   1       1122221   36899999999999854

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=98.81  E-value=5.2e-08  Score=87.92  Aligned_cols=125  Identities=22%  Similarity=0.336  Sum_probs=75.1

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeE---------------------------------------
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---------------------------------------  130 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~---------------------------------------  130 (269)
                      ...|+|++||.-++||||.+..+... ++.+.+.-.-.|+.                                       
T Consensus       306 DhLPRVVVVGDQSaGKTSVLEmiAqA-RIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E  384 (980)
T KOG0447|consen  306 DHLPRVVVVGDQSAGKTSVLEMIAQA-RIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIE  384 (980)
T ss_pred             ccCceEEEEcCccccchHHHHHHHHh-ccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHH
Confidence            56799999999999999999988865 33222211111111                                       


Q ss_pred             --------------eeEE--Ee-C---CcEEEEcCCCCCCcchhHHHH---HHHHHHHHHHHhcccccceEEEEE-eCCC
Q 024325          131 --------------INFF--KL-G---TKLCLVDLPGYGFAYAKEEVK---DAWEELVKEYVSTRVSLKRVCLLI-DTKW  186 (269)
Q Consensus       131 --------------~~~~--~~-~---~~~~lvDtpG~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d~vl~vi-d~~~  186 (269)
                                    ....  +. |   ..+++||.||+..+...+...   +....+...|+.   +.++++++| |.+-
T Consensus       385 ~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~---NPNAIILCIQDGSV  461 (980)
T KOG0447|consen  385 LRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQ---NPNAIILCIQDGSV  461 (980)
T ss_pred             HHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhc---CCCeEEEEeccCCc
Confidence                          1000  00 1   238999999997764433322   223344455444   488888887 4432


Q ss_pred             CCC-cchHHHHHHHHhhCCcEEEEEecCCCCCc
Q 024325          187 GVK-PRDHELISLMERSQTKYQVVLTKTDTVFP  218 (269)
Q Consensus       187 ~~~-~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~  218 (269)
                      ... ..-.++...+..++...|+|++|+|+...
T Consensus       462 DAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEk  494 (980)
T KOG0447|consen  462 DAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEK  494 (980)
T ss_pred             chhhhhHHHHHHhcCCCCCeeEEEEeecchhhh
Confidence            111 11234555555567889999999999753

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.79  E-value=8.4e-08  Score=86.90  Aligned_cols=140  Identities=14%  Similarity=0.182  Sum_probs=87.4

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhc
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST  171 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~  171 (269)
                      .+.|+++|+||+||||||.+|.....-...+.+.|...  ........++|+.+|.-            +..|    +.-
T Consensus        69 PfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiT--vvsgK~RRiTflEcp~D------------l~~m----iDv  130 (1077)
T COG5192          69 PFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPIT--VVSGKTRRITFLECPSD------------LHQM----IDV  130 (1077)
T ss_pred             CeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceE--EeecceeEEEEEeChHH------------HHHH----HhH
Confidence            45677999999999999999987632122222222110  11112345778888741            0122    222


Q ss_pred             ccccceEEEEEeCCCCCCcchHHHHHHHHhhCCc-EEEEEecCCCCCchH-HHHHHHHHHHHHHhcCCCCCCeEEeeCCC
Q 024325          172 RVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPID-VARRAMQIEESLKANNSLVQPVMMVSSKS  249 (269)
Q Consensus       172 ~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p-~iiv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~vi~vSa~~  249 (269)
                      ..-+|+|+++||+..++.-...+++..+..++.| ++-|++..|+..... +......++..+-..--.+...|.+|...
T Consensus       131 aKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~  210 (1077)
T COG5192         131 AKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVE  210 (1077)
T ss_pred             HHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence            3338999999999999998899999999999887 667999999986433 33333333322211111246678887644

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.79  E-value=6.9e-08  Score=83.32  Aligned_cols=89  Identities=11%  Similarity=0.179  Sum_probs=64.2

Q ss_pred             HHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeC
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS  247 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa  247 (269)
                      ....+..+|++++|+|+..+....+..+.+.+.  ++|+++|+||+|+.+..........    +..   ...+++++||
T Consensus        18 l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~~~~~~~~~~~~----~~~---~~~~vi~vSa   88 (287)
T PRK09563         18 IKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLADPEVTKKWIEY----FEE---QGIKALAINA   88 (287)
T ss_pred             HHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcCCHHHHHHHHHH----HHH---cCCeEEEEEC
Confidence            334455599999999998777777666655554  6899999999999754322222222    211   1357899999


Q ss_pred             CCCCCHHHHHHHHHHhhh
Q 024325          248 KSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       248 ~~g~gi~~L~~~i~~~~~  265 (269)
                      +++.|+++|.+.|...+.
T Consensus        89 ~~~~gi~~L~~~l~~~l~  106 (287)
T PRK09563         89 KKGQGVKKILKAAKKLLK  106 (287)
T ss_pred             CCcccHHHHHHHHHHHHH
Confidence            999999999999887654

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.77  E-value=4.8e-07  Score=81.47  Aligned_cols=117  Identities=17%  Similarity=0.194  Sum_probs=66.5

Q ss_pred             CcEEEEEcCCCCChHHHHHHHh------cCcCccccCCCCCc----------e--eEeeEEE------------------
Q 024325           92 LPEIAFAGRSNVGKSSMLNALT------RQWGVVRTSDKPGL----------T--QTINFFK------------------  135 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~------~~~~~~~~s~~~gt----------t--~~~~~~~------------------  135 (269)
                      ...|+++|.+|+||||++..|.      |. .+..++..+..          .  ..+.++.                  
T Consensus       100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~-kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~  178 (429)
T TIGR01425       100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGF-KPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF  178 (429)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCC-CEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence            3478999999999999998876      32 33333332110          0  0011110                  


Q ss_pred             --eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecC
Q 024325          136 --LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKT  213 (269)
Q Consensus       136 --~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~  213 (269)
                        .+..++++||||.....     .....++. .+.. ....+.+++|+|+..+.  ......+.+...-.+.-+|+||.
T Consensus       179 ~~~~~DvViIDTaGr~~~d-----~~lm~El~-~i~~-~~~p~e~lLVlda~~Gq--~a~~~a~~F~~~~~~~g~IlTKl  249 (429)
T TIGR01425       179 KKENFDIIIVDTSGRHKQE-----DSLFEEML-QVAE-AIQPDNIIFVMDGSIGQ--AAEAQAKAFKDSVDVGSVIITKL  249 (429)
T ss_pred             HhCCCCEEEEECCCCCcch-----HHHHHHHH-HHhh-hcCCcEEEEEeccccCh--hHHHHHHHHHhccCCcEEEEECc
Confidence              14579999999964421     11112222 2222 22368899999987442  22334444443334677899999


Q ss_pred             CCCCc
Q 024325          214 DTVFP  218 (269)
Q Consensus       214 Dl~~~  218 (269)
                      |-...
T Consensus       250 D~~ar  254 (429)
T TIGR01425       250 DGHAK  254 (429)
T ss_pred             cCCCC
Confidence            98654

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.75  E-value=2e-08  Score=85.40  Aligned_cols=71  Identities=28%  Similarity=0.447  Sum_probs=48.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCC---C----CCceeEeeEEEeCCcEEEEcCCCCCCc----chhHHHHHHHH
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSD---K----PGLTQTINFFKLGTKLCLVDLPGYGFA----YAKEEVKDAWE  162 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~---~----~gtt~~~~~~~~~~~~~lvDtpG~~~~----~~~~~~~~~~~  162 (269)
                      ..+++|.+|+|||||+|+|.+.. ...++.   .    .-||+....+..+..=.++||||+.+-    ...+.+...+.
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~-~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~iiDTPGf~~~~l~~~~~e~l~~~F~  244 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPEL-NQKTGEISEKLGRGRHTTTHVELFPLPGGGWIIDTPGFRSLGLAHLEPEDLVQAFP  244 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchh-hhhhhhhcccCCCCCCccceEEEEEcCCCCEEEeCCCCCccCcccCCHHHHHHHhH
Confidence            68999999999999999999852 223322   2    237777777776545689999999753    23444444554


Q ss_pred             HHH
Q 024325          163 ELV  165 (269)
Q Consensus       163 ~~~  165 (269)
                      ++.
T Consensus       245 ef~  247 (301)
T COG1162         245 EFA  247 (301)
T ss_pred             HHH
Confidence            443

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.75  E-value=3.5e-08  Score=82.17  Aligned_cols=141  Identities=21%  Similarity=0.284  Sum_probs=87.6

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccc--cCCCCCc-----eeEeeEEEeCCcEEEEcCCCCCCcchhHH----HHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVR--TSDKPGL-----TQTINFFKLGTKLCLVDLPGYGFAYAKEE----VKDA  160 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~--~s~~~gt-----t~~~~~~~~~~~~~lvDtpG~~~~~~~~~----~~~~  160 (269)
                      .++|..+|.+|.|||||++.|++..--..  ....|++     |-+........+++++||.|+++....+.    +.+.
T Consensus        42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdy  121 (406)
T KOG3859|consen   42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDY  121 (406)
T ss_pred             eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHHH
Confidence            37899999999999999999998631111  1122332     22222333345689999999998643322    2222


Q ss_pred             HHHHHHHHHh------------cccccceEEEEEeCC-CCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHH
Q 024325          161 WEELVKEYVS------------TRVSLKRVCLLIDTK-WGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQ  227 (269)
Q Consensus       161 ~~~~~~~~~~------------~~~~~d~vl~vid~~-~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~  227 (269)
                      ...-.+.|+.            .-.-+++++|.|.+. +++...|.-.++.+.. .+++|.|+.|+|.+...++......
T Consensus       122 idaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Lds-kVNIIPvIAKaDtisK~eL~~FK~k  200 (406)
T KOG3859|consen  122 IDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDS-KVNIIPVIAKADTISKEELKRFKIK  200 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhh-hhhhHHHHHHhhhhhHHHHHHHHHH
Confidence            2222222222            112367788877654 5666666666666653 6789999999999998888776655


Q ss_pred             HHHHHH
Q 024325          228 IEESLK  233 (269)
Q Consensus       228 ~~~~~~  233 (269)
                      +...+.
T Consensus       201 imsEL~  206 (406)
T KOG3859|consen  201 IMSELV  206 (406)
T ss_pred             HHHHHH
Confidence            544443

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=98.74  E-value=7.2e-08  Score=78.28  Aligned_cols=143  Identities=21%  Similarity=0.219  Sum_probs=89.9

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe----CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~----~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      .+|.++|.+|+||||+=..++.. ..++....+|-|-|+...+.    +.-+.+||..|.             +.+++.|
T Consensus         5 kKvlLMGrsGsGKsSmrsiiF~n-y~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgq-------------e~fmen~   70 (295)
T KOG3886|consen    5 KKVLLMGRSGSGKSSMRSIIFAN-YIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQ-------------EEFMENY   70 (295)
T ss_pred             ceEEEeccCCCCccccchhhhhh-hhhhhhhccCCcceeeehhhhhhhhheeehhccCCc-------------HHHHHHH
Confidence            47999999999999998888876 44666667788878754432    356789999996             3445555


Q ss_pred             Hh-----cccccceEEEEEeCCCCCCcchHH----HHHHHHhh--CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhc-C
Q 024325          169 VS-----TRVSLKRVCLLIDTKWGVKPRDHE----LISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN-N  236 (269)
Q Consensus       169 ~~-----~~~~~d~vl~vid~~~~~~~~~~~----~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~  236 (269)
                      +.     ...+.+++++|+|++...-..|..    .++.+.++  ...+.+.+.|+|++..+..+...+.-...+... .
T Consensus        71 ~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~  150 (295)
T KOG3886|consen   71 LSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSR  150 (295)
T ss_pred             HhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcc
Confidence            55     234589999999997543333433    33334333  245788899999997654443333222222221 1


Q ss_pred             CCCCCeEEeeCCC
Q 024325          237 SLVQPVMMVSSKS  249 (269)
Q Consensus       237 ~~~~~vi~vSa~~  249 (269)
                      +....++++|--.
T Consensus       151 ~~~~~~f~TsiwD  163 (295)
T KOG3886|consen  151 PLECKCFPTSIWD  163 (295)
T ss_pred             cccccccccchhh
Confidence            2234456665543

>PRK12289 GTPase RsgA; Reviewed

Probab=98.73  E-value=7e-08  Score=85.21  Aligned_cols=84  Identities=17%  Similarity=0.255  Sum_probs=58.3

Q ss_pred             cccceEEEEEeCCCCC-Ccch-HHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCC
Q 024325          173 VSLKRVCLLIDTKWGV-KPRD-HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSG  250 (269)
Q Consensus       173 ~~~d~vl~vid~~~~~-~~~~-~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g  250 (269)
                      .++|.+++|+|...+. .... ..++..+...++|+++|+||+|+.+..+.....    +.+.   ..+++++++||++|
T Consensus        88 aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~~----~~~~---~~g~~v~~iSA~tg  160 (352)
T PRK12289         88 ANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQWQ----DRLQ---QWGYQPLFISVETG  160 (352)
T ss_pred             hcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCChHHHHHHH----HHHH---hcCCeEEEEEcCCC
Confidence            3499999999987432 2211 344444455689999999999998654432222    2222   23568999999999


Q ss_pred             CCHHHHHHHHHHh
Q 024325          251 AGIRSLRTVLSKI  263 (269)
Q Consensus       251 ~gi~~L~~~i~~~  263 (269)
                      .|+++|++.|...
T Consensus       161 ~GI~eL~~~L~~k  173 (352)
T PRK12289        161 IGLEALLEQLRNK  173 (352)
T ss_pred             CCHHHHhhhhccc
Confidence            9999999988653

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.72  E-value=4.3e-08  Score=84.58  Aligned_cols=57  Identities=30%  Similarity=0.402  Sum_probs=42.4

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCC-------CCCceeEeeEEEeCCcEEEEcCCCCCC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-------KPGLTQTINFFKLGTKLCLVDLPGYGF  150 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~-------~~gtt~~~~~~~~~~~~~lvDtpG~~~  150 (269)
                      ..++++|++|+|||||+|+|++.. ...++.       -..||++...+.......++||||+.+
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~-~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG~~~  225 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDL-DLATGEISEKLGRGRHTTTHRELFPLPGGGLLIDTPGFRE  225 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchh-hccccceeccCCCCCcccceEEEEEcCCCCEEEECCCCCc
Confidence            479999999999999999999873 222222       234777777666654458999999954

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=98.68  E-value=8.8e-09  Score=89.49  Aligned_cols=61  Identities=31%  Similarity=0.572  Sum_probs=54.3

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCc
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFA  151 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~  151 (269)
                      ...+.|+|+|+||+||||+||.|... .+..+.++||-|.--++.+.-..+.+||+||+..+
T Consensus       305 kkqISVGfiGYPNvGKSSiINTLR~K-kVCkvAPIpGETKVWQYItLmkrIfLIDcPGvVyp  365 (572)
T KOG2423|consen  305 KKQISVGFIGYPNVGKSSIINTLRKK-KVCKVAPIPGETKVWQYITLMKRIFLIDCPGVVYP  365 (572)
T ss_pred             ccceeeeeecCCCCchHHHHHHHhhc-ccccccCCCCcchHHHHHHHHhceeEecCCCccCC
Confidence            44578999999999999999999998 78999999999988777777778999999998665

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.68  E-value=1.6e-07  Score=79.21  Aligned_cols=83  Identities=18%  Similarity=0.275  Sum_probs=57.5

Q ss_pred             ccceEEEEEeCCCCC-Ccc-hHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCC
Q 024325          174 SLKRVCLLIDTKWGV-KPR-DHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGA  251 (269)
Q Consensus       174 ~~d~vl~vid~~~~~-~~~-~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~  251 (269)
                      ++|.+++|+|...+. ... -..++..+...++|+++|+||+||.+......  +.. +.+.   ..+.+++.+||++|+
T Consensus        36 n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~~--~~~-~~~~---~~g~~v~~~SAktg~  109 (245)
T TIGR00157        36 NIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDDEDMEK--EQL-DIYR---NIGYQVLMTSSKNQD  109 (245)
T ss_pred             cCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCCHHHHH--HHH-HHHH---HCCCeEEEEecCCch
Confidence            499999999987533 221 13444555557899999999999976443321  111 1222   235789999999999


Q ss_pred             CHHHHHHHHHH
Q 024325          252 GIRSLRTVLSK  262 (269)
Q Consensus       252 gi~~L~~~i~~  262 (269)
                      |+++|++.|..
T Consensus       110 gi~eLf~~l~~  120 (245)
T TIGR00157       110 GLKELIEALQN  120 (245)
T ss_pred             hHHHHHhhhcC
Confidence            99999998764

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=98.68  E-value=4.9e-07  Score=78.82  Aligned_cols=152  Identities=15%  Similarity=0.138  Sum_probs=84.1

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcC---ccc-cCCC-----C--C----ceeE-------eeEE---------------
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWG---VVR-TSDK-----P--G----LTQT-------INFF---------------  134 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~---~~~-~s~~-----~--g----tt~~-------~~~~---------------  134 (269)
                      .|..++.|+-|||||||+|.|+....   ++. +...     -  .    +..+       |...               
T Consensus         1 ipVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~   80 (323)
T COG0523           1 IPVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLR   80 (323)
T ss_pred             CCEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHh
Confidence            36889999999999999999886521   111 1110     0  0    0000       0001               


Q ss_pred             -EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcch---HHHHHHHHhhCCcEEEEE
Q 024325          135 -KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD---HELISLMERSQTKYQVVL  210 (269)
Q Consensus       135 -~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~---~~~~~~l~~~~~p~iiv~  210 (269)
                       ...+...+|.|.|+.++..   +..  ..+....+......|.++-|||+.+.....+   ..+.+++   ...-++|+
T Consensus        81 ~~~~~D~ivIEtTGlA~P~p---v~~--t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qi---a~AD~ivl  152 (323)
T COG0523          81 RRDRPDRLVIETTGLADPAP---VIQ--TFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQL---AFADVIVL  152 (323)
T ss_pred             ccCCCCEEEEeCCCCCCCHH---HHH--HhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHH---HhCcEEEE
Confidence             1235688999999987621   110  1111112222334788999999985433222   1222233   33458999


Q ss_pred             ecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHH
Q 024325          211 TKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLR  257 (269)
Q Consensus       211 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~  257 (269)
                      ||+|++++.++......+++    . ....+++..|. .+.++.+++
T Consensus       153 NK~Dlv~~~~l~~l~~~l~~----l-np~A~i~~~~~-~~~~~~~ll  193 (323)
T COG0523         153 NKTDLVDAEELEALEARLRK----L-NPRARIIETSY-GDVDLAELL  193 (323)
T ss_pred             ecccCCCHHHHHHHHHHHHH----h-CCCCeEEEccc-cCCCHHHhh
Confidence            99999998765444443333    2 22456777766 444454444

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.67  E-value=7.4e-08  Score=75.74  Aligned_cols=115  Identities=20%  Similarity=0.233  Sum_probs=63.1

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcC---ccccCCCCC-------------c-eeEe-------------e--E-------
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWG---VVRTSDKPG-------------L-TQTI-------------N--F-------  133 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~---~~~~s~~~g-------------t-t~~~-------------~--~-------  133 (269)
                      |.++++|+.|+|||||++.+++...   .+...+..|             . ....             .  .       
T Consensus         1 p~~~l~G~~GsGKTtl~~~l~~~~~~~~~~~i~~~~G~~~~d~~~~~~~~~~v~~l~~GCiCC~~~~~l~~~l~~l~~~~   80 (158)
T cd03112           1 PVTVLTGFLGAGKTTLLNHILTEQHGRKIAVIENEFGEVGIDNQLVVDTDEEIIEMNNGCICCTVRGDLIRALLDLLERL   80 (158)
T ss_pred             CEEEEEECCCCCHHHHHHHHHhcccCCcEEEEecCCCccchhHHHHhCCCceEEEeCCCEeEeeCchhHHHHHHHHHHHH
Confidence            5789999999999999999876521   111111111             0 0000             0  0       


Q ss_pred             --EEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcc--hHHHHHHHHhhCCcEEEE
Q 024325          134 --FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPR--DHELISLMERSQTKYQVV  209 (269)
Q Consensus       134 --~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~--~~~~~~~l~~~~~p~iiv  209 (269)
                        ....+...++||||..++..   +.+.  .+..........++.+++++|+.......  ...+..++..   .-++|
T Consensus        81 ~~~~~~~d~I~IEt~G~~~p~~---~~~~--~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~---ad~iv  152 (158)
T cd03112          81 DAGKIAFDRIVIETTGLADPGP---VAQT--FFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF---ADRIL  152 (158)
T ss_pred             HhccCCCCEEEEECCCcCCHHH---HHHH--HhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH---CCEEE
Confidence              01245689999999976421   1110  01122333444589999999986422111  1223333333   34789


Q ss_pred             EecCCC
Q 024325          210 LTKTDT  215 (269)
Q Consensus       210 ~NK~Dl  215 (269)
                      +||+|+
T Consensus       153 lnk~dl  158 (158)
T cd03112         153 LNKTDL  158 (158)
T ss_pred             EecccC
Confidence            999996

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.63  E-value=2e-06  Score=75.07  Aligned_cols=152  Identities=16%  Similarity=0.211  Sum_probs=79.3

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCc-----CccccCCCCCc------------eeEeeEE-------------------
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKPGL------------TQTINFF-------------------  134 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~-----~~~~~s~~~gt------------t~~~~~~-------------------  134 (269)
                      ....++++|++|+||||++..|.+..     .+..+...+..            ...+.+.                   
T Consensus       113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~  192 (318)
T PRK10416        113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA  192 (318)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence            34689999999999999998776431     11111111100            0001111                   


Q ss_pred             -EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHh-cccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEec
Q 024325          135 -KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS-TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTK  212 (269)
Q Consensus       135 -~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK  212 (269)
                       ..+..++++||||.......  ..+....+....-. .....+.+++|+|+..+.... .+. ......-.+.-+|+||
T Consensus       193 ~~~~~D~ViIDTaGr~~~~~~--l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~-~~a-~~f~~~~~~~giIlTK  268 (318)
T PRK10416        193 KARGIDVLIIDTAGRLHNKTN--LMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNAL-SQA-KAFHEAVGLTGIILTK  268 (318)
T ss_pred             HhCCCCEEEEeCCCCCcCCHH--HHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHH-HHH-HHHHhhCCCCEEEEEC
Confidence             12456999999997543211  11111222211100 012367789999997432111 122 2111112345789999


Q ss_pred             CCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHH
Q 024325          213 TDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLR  257 (269)
Q Consensus       213 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~  257 (269)
                      .|.......  .....    ..   ...|+.+++  +|+++++|.
T Consensus       269 lD~t~~~G~--~l~~~----~~---~~~Pi~~v~--~Gq~~~Dl~  302 (318)
T PRK10416        269 LDGTAKGGV--VFAIA----DE---LGIPIKFIG--VGEGIDDLQ  302 (318)
T ss_pred             CCCCCCccH--HHHHH----HH---HCCCEEEEe--CCCChhhCc
Confidence            996643221  11111    11   158999998  888898875

>PRK00098 GTPase RsgA; Reviewed

Probab=98.61  E-value=2.1e-07  Score=80.77  Aligned_cols=84  Identities=23%  Similarity=0.308  Sum_probs=57.2

Q ss_pred             cccceEEEEEeCCCCCCcch--HHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCC
Q 024325          173 VSLKRVCLLIDTKWGVKPRD--HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSG  250 (269)
Q Consensus       173 ~~~d~vl~vid~~~~~~~~~--~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g  250 (269)
                      .++|.+++|+|+..+.....  ..++..+...++|+++|+||+|+.+..+.   .....+.+..   .+.+++++||++|
T Consensus        79 aniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~~~~~~---~~~~~~~~~~---~g~~v~~vSA~~g  152 (298)
T PRK00098         79 ANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLDDLEE---ARELLALYRA---IGYDVLELSAKEG  152 (298)
T ss_pred             ecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcCCCHHH---HHHHHHHHHH---CCCeEEEEeCCCC
Confidence            45999999999864322211  34555566678999999999999743221   1112222222   2468999999999


Q ss_pred             CCHHHHHHHHHH
Q 024325          251 AGIRSLRTVLSK  262 (269)
Q Consensus       251 ~gi~~L~~~i~~  262 (269)
                      +|+++|++.|..
T Consensus       153 ~gi~~L~~~l~g  164 (298)
T PRK00098        153 EGLDELKPLLAG  164 (298)
T ss_pred             ccHHHHHhhccC
Confidence            999999998754

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.60  E-value=5.4e-06  Score=70.89  Aligned_cols=106  Identities=16%  Similarity=0.171  Sum_probs=56.4

Q ss_pred             CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH-hcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCC
Q 024325          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV-STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDT  215 (269)
Q Consensus       137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl  215 (269)
                      +..+.++||||.....  ....+....+..... ......|.+++|+|+..  ...+........+.-.+.-+|+||+|.
T Consensus       154 ~~D~ViIDT~G~~~~d--~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~--~~~~~~~~~~f~~~~~~~g~IlTKlDe  229 (272)
T TIGR00064       154 NIDVVLIDTAGRLQNK--VNLMDELKKIKRVIKKVDKDAPDEVLLVLDATT--GQNALEQAKVFNEAVGLTGIILTKLDG  229 (272)
T ss_pred             CCCEEEEeCCCCCcch--HHHHHHHHHHHHHHhcccCCCCceEEEEEECCC--CHHHHHHHHHHHhhCCCCEEEEEccCC
Confidence            4679999999986531  111111122221111 01123788999999963  222222222222212346789999998


Q ss_pred             CCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHH
Q 024325          216 VFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLR  257 (269)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~  257 (269)
                      .......  ....    ..   ...|+.+++  +|+++++|.
T Consensus       230 ~~~~G~~--l~~~----~~---~~~Pi~~~~--~Gq~~~dl~  260 (272)
T TIGR00064       230 TAKGGII--LSIA----YE---LKLPIKFIG--VGEKIDDLA  260 (272)
T ss_pred             CCCccHH--HHHH----HH---HCcCEEEEe--CCCChHhCc
Confidence            6543221  1111    11   147899998  888888775

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.60  E-value=6e-07  Score=79.92  Aligned_cols=88  Identities=18%  Similarity=0.094  Sum_probs=58.3

Q ss_pred             ccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchH-HHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCC
Q 024325          174 SLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID-VARRAMQIEESLKANNSLVQPVMMVSSKSGAG  252 (269)
Q Consensus       174 ~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~g  252 (269)
                      .++++++|+|+.+.......++.+.+.  +.|+++|+||+|+.+... .....+.+.+...........++++||++|+|
T Consensus        63 ~~~~Il~VvD~~d~~~s~~~~l~~~~~--~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~g~g  140 (360)
T TIGR03597        63 SNALIVYVVDIFDFEGSLIPELKRFVG--GNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAKKGNG  140 (360)
T ss_pred             CCcEEEEEEECcCCCCCccHHHHHHhC--CCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEecCCCCCC
Confidence            378999999986544444444444432  689999999999986432 22333333333333211113589999999999


Q ss_pred             HHHHHHHHHHh
Q 024325          253 IRSLRTVLSKI  263 (269)
Q Consensus       253 i~~L~~~i~~~  263 (269)
                      +++|++.|.+.
T Consensus       141 v~eL~~~l~~~  151 (360)
T TIGR03597       141 IDELLDKIKKA  151 (360)
T ss_pred             HHHHHHHHHHH
Confidence            99999999764

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.57  E-value=7.1e-08  Score=75.82  Aligned_cols=153  Identities=12%  Similarity=0.046  Sum_probs=88.8

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE-Ee-C-CcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF-KL-G-TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~-~~-~-~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      +.+++++|..|.||+|++++.+...-.....+..|.......+ +. + .++..|||+|...-          ..+...|
T Consensus        10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~----------gglrdgy   79 (216)
T KOG0096|consen   10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKK----------GGLRDGY   79 (216)
T ss_pred             eEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceee----------ccccccc
Confidence            5789999999999999998865541111122222333333222 22 3 67899999997321          1111111


Q ss_pred             HhcccccceEEEEEeCCCCCCcch-HHHHHHHHh--hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEe
Q 024325          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV  245 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v  245 (269)
                      +-.   ....++++|....++-.. ..+...+..  .++|++++.||.|.-.+....+..       .-....+..++.+
T Consensus        80 yI~---~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~r~~k~k~v-------~~~rkknl~y~~i  149 (216)
T KOG0096|consen   80 YIQ---GQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKARKVKAKPV-------SFHRKKNLQYYEI  149 (216)
T ss_pred             EEe---cceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceeccccccccccc-------eeeecccceeEEe
Confidence            111   344566666654333222 122222221  258999999999986553111111       1111235678999


Q ss_pred             eCCCCCCHHHHHHHHHHhh
Q 024325          246 SSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       246 Sa~~g~gi~~L~~~i~~~~  264 (269)
                      ||+.+.|++.-+.|+.+.+
T Consensus       150 Saksn~NfekPFl~LarKl  168 (216)
T KOG0096|consen  150 SAKSNYNFERPFLWLARKL  168 (216)
T ss_pred             ecccccccccchHHHhhhh
Confidence            9999999999999998765

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.56  E-value=3.2e-07  Score=79.18  Aligned_cols=83  Identities=23%  Similarity=0.304  Sum_probs=58.1

Q ss_pred             cccceEEEEEeCCCCC-Ccch-HHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCC
Q 024325          173 VSLKRVCLLIDTKWGV-KPRD-HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSG  250 (269)
Q Consensus       173 ~~~d~vl~vid~~~~~-~~~~-~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g  250 (269)
                      .++|.+++|+|+..+. .... ..++..+...++|+++|+||+|+.++.+.....    ....   ..+.+++++||+++
T Consensus        77 anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~----~~~~---~~g~~v~~vSA~~g  149 (287)
T cd01854          77 ANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDDEEEELEL----VEAL---ALGYPVLAVSAKTG  149 (287)
T ss_pred             EeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCChHHHHHHH----HHHH---hCCCeEEEEECCCC
Confidence            3499999999997654 2222 345555666789999999999998653221111    1111   13578999999999


Q ss_pred             CCHHHHHHHHHH
Q 024325          251 AGIRSLRTVLSK  262 (269)
Q Consensus       251 ~gi~~L~~~i~~  262 (269)
                      .|+++|...|..
T Consensus       150 ~gi~~L~~~L~~  161 (287)
T cd01854         150 EGLDELREYLKG  161 (287)
T ss_pred             ccHHHHHhhhcc
Confidence            999999988764

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK14974 cell division protein FtsY; Provisional

Probab=98.53  E-value=1.7e-06  Score=75.96  Aligned_cols=146  Identities=21%  Similarity=0.223  Sum_probs=78.4

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC-----cCccccCCCCC---ce-------e--EeeE--------------------E
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ-----WGVVRTSDKPG---LT-------Q--TINF--------------------F  134 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~-----~~~~~~s~~~g---tt-------~--~~~~--------------------~  134 (269)
                      ...|+++|.+|+||||++..|...     ..+..+.....   ..       .  .+.+                    .
T Consensus       140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~  219 (336)
T PRK14974        140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAK  219 (336)
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHH
Confidence            458999999999999988776532     11222211110   00       0  0000                    0


Q ss_pred             EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCC
Q 024325          135 KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD  214 (269)
Q Consensus       135 ~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~D  214 (269)
                      ..+..++++||||......     ....++ ..+.... ..|.+++|+|+..+  ....+........-..--+|+||.|
T Consensus       220 ~~~~DvVLIDTaGr~~~~~-----~lm~eL-~~i~~~~-~pd~~iLVl~a~~g--~d~~~~a~~f~~~~~~~giIlTKlD  290 (336)
T PRK14974        220 ARGIDVVLIDTAGRMHTDA-----NLMDEL-KKIVRVT-KPDLVIFVGDALAG--NDAVEQAREFNEAVGIDGVILTKVD  290 (336)
T ss_pred             hCCCCEEEEECCCccCCcH-----HHHHHH-HHHHHhh-CCceEEEeeccccc--hhHHHHHHHHHhcCCCCEEEEeeec
Confidence            1245699999999864211     111222 1111111 36888999998643  2222222333222234568899999


Q ss_pred             CCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHH
Q 024325          215 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLR  257 (269)
Q Consensus       215 l~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~  257 (269)
                      ........  .....       ....|+.+++  +|+++++|.
T Consensus       291 ~~~~~G~~--ls~~~-------~~~~Pi~~i~--~Gq~v~Dl~  322 (336)
T PRK14974        291 ADAKGGAA--LSIAY-------VIGKPILFLG--VGQGYDDLI  322 (336)
T ss_pred             CCCCccHH--HHHHH-------HHCcCEEEEe--CCCChhhcc
Confidence            87543321  11111       1258999998  799998876

>PRK12288 GTPase RsgA; Reviewed

Probab=98.53  E-value=1e-06  Score=77.84  Aligned_cols=87  Identities=17%  Similarity=0.159  Sum_probs=58.7

Q ss_pred             cccceEEEEEeCCCCCCcch-HHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCC
Q 024325          173 VSLKRVCLLIDTKWGVKPRD-HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGA  251 (269)
Q Consensus       173 ~~~d~vl~vid~~~~~~~~~-~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~  251 (269)
                      .++|.+++|.+..+.+.... ..++......++|.++|+||+|+.+..+...... ....+.   ..+.+++++||++++
T Consensus       119 ANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~-~~~~y~---~~g~~v~~vSA~tg~  194 (347)
T PRK12288        119 ANIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNE-QLDIYR---NIGYRVLMVSSHTGE  194 (347)
T ss_pred             EEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHH-HHHHHH---hCCCeEEEEeCCCCc
Confidence            35889888888764443322 2344455566899999999999987543222111 112222   235789999999999


Q ss_pred             CHHHHHHHHHHh
Q 024325          252 GIRSLRTVLSKI  263 (269)
Q Consensus       252 gi~~L~~~i~~~  263 (269)
                      |+++|+++|...
T Consensus       195 GideL~~~L~~k  206 (347)
T PRK12288        195 GLEELEAALTGR  206 (347)
T ss_pred             CHHHHHHHHhhC
Confidence            999999998753

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.52  E-value=7e-07  Score=88.62  Aligned_cols=126  Identities=21%  Similarity=0.266  Sum_probs=79.4

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcCcCcc-----ccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcch--hHHHHHHHH
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVV-----RTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYA--KEEVKDAWE  162 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~-----~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~--~~~~~~~~~  162 (269)
                      .+.|..+++|++|+||||++...--.....     ..-..+| |++|.++. +...+++||+|-.....  .+.-...|.
T Consensus       123 yeLPWy~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~g-T~~cdwwf-~deaVlIDtaGry~~q~s~~~~~~~~W~  200 (1188)
T COG3523         123 YELPWYMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPG-TRNCDWWF-TDEAVLIDTAGRYITQDSADEVDRAEWL  200 (1188)
T ss_pred             hcCCceEEecCCCCCcchHHhcccccCcchhhhccccccCCC-CcccCccc-ccceEEEcCCcceecccCcchhhHHHHH
Confidence            678999999999999999985432211111     1122334 78887543 56689999999654432  223345566


Q ss_pred             HH---HHHHHhcccccceEEEEEeCCCCCCcchHHH---H-------HHHH---hhCCcEEEEEecCCCCCc
Q 024325          163 EL---VKEYVSTRVSLKRVCLLIDTKWGVKPRDHEL---I-------SLME---RSQTKYQVVLTKTDTVFP  218 (269)
Q Consensus       163 ~~---~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~---~-------~~l~---~~~~p~iiv~NK~Dl~~~  218 (269)
                      .+   .+.+.... .++.|++.+|.++-.+....+.   .       +.+.   +...|+++++||.|+++.
T Consensus       201 ~fL~lLkk~R~~~-piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~G  271 (1188)
T COG3523         201 GFLGLLKKYRRRR-PLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPG  271 (1188)
T ss_pred             HHHHHHHHhccCC-CCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEeccccccc
Confidence            54   34444433 4899999999875433333221   1       1222   136899999999999974

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=98.51  E-value=1.3e-07  Score=75.90  Aligned_cols=116  Identities=16%  Similarity=0.131  Sum_probs=62.6

Q ss_pred             cEEEEEcCCCCChHHHHHHHhc----CcCccccCCCCC-c-------------eeEe----e---------------EEE
Q 024325           93 PEIAFAGRSNVGKSSMLNALTR----QWGVVRTSDKPG-L-------------TQTI----N---------------FFK  135 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~----~~~~~~~s~~~g-t-------------t~~~----~---------------~~~  135 (269)
                      |.+.+.|..|||||||++.++.    ..+++.+.+..| .             ....    .               ...
T Consensus         1 Pv~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~   80 (178)
T PF02492_consen    1 PVIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLRE   80 (178)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCC
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHh
Confidence            6789999999999999999982    112333222222 0             0000    0               001


Q ss_pred             e--CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcc--hHHHHHHHHhhCCcEEEEEe
Q 024325          136 L--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPR--DHELISLMERSQTKYQVVLT  211 (269)
Q Consensus       136 ~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~--~~~~~~~l~~~~~p~iiv~N  211 (269)
                      .  ++...++.+.|..++..-     .+.   ...+...-..+.++.|+|+..-....  ..-+..+   ...--++|+|
T Consensus        81 ~~~~~d~IiIE~sG~a~p~~l-----~~~---~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Q---i~~ADvIvln  149 (178)
T PF02492_consen   81 YEERPDRIIIETSGLADPAPL-----ILQ---DPPLKEDFRLDSIITVVDATNFDELENIPELLREQ---IAFADVIVLN  149 (178)
T ss_dssp             CHGC-SEEEEEEECSSGGGGH-----HHH---SHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHH---HCT-SEEEEE
T ss_pred             cCCCcCEEEECCccccccchh-----hhc---cccccccccccceeEEeccccccccccchhhhhhc---chhcCEEEEe
Confidence            1  357899999998765322     000   11112222378899999996421111  1122222   3444689999


Q ss_pred             cCCCCCch
Q 024325          212 KTDTVFPI  219 (269)
Q Consensus       212 K~Dl~~~~  219 (269)
                      |+|+.+..
T Consensus       150 K~D~~~~~  157 (178)
T PF02492_consen  150 KIDLVSDE  157 (178)
T ss_dssp             -GGGHHHH
T ss_pred             ccccCChh
Confidence            99998765

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>PRK01889 GTPase RsgA; Reviewed

Probab=98.49  E-value=1.1e-06  Score=78.16  Aligned_cols=82  Identities=23%  Similarity=0.288  Sum_probs=60.7

Q ss_pred             cccceEEEEEeCCCCCCcc-hHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCC
Q 024325          173 VSLKRVCLLIDTKWGVKPR-DHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGA  251 (269)
Q Consensus       173 ~~~d~vl~vid~~~~~~~~-~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~  251 (269)
                      .++|.+++|+++.+++... ...++..+...++|.++|+||+||.++.+  ...+.+...     ..+++++++|+++|.
T Consensus       111 ANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~~~--~~~~~~~~~-----~~g~~Vi~vSa~~g~  183 (356)
T PRK01889        111 ANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCEDAE--EKIAEVEAL-----APGVPVLAVSALDGE  183 (356)
T ss_pred             EeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCCHH--HHHHHHHHh-----CCCCcEEEEECCCCc
Confidence            4589999999987655542 34666777778899999999999986522  122222221     236899999999999


Q ss_pred             CHHHHHHHHH
Q 024325          252 GIRSLRTVLS  261 (269)
Q Consensus       252 gi~~L~~~i~  261 (269)
                      |+++|..+|.
T Consensus       184 gl~~L~~~L~  193 (356)
T PRK01889        184 GLDVLAAWLS  193 (356)
T ss_pred             cHHHHHHHhh
Confidence            9999999985

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=98.47  E-value=1.9e-06  Score=65.74  Aligned_cols=156  Identities=12%  Similarity=0.076  Sum_probs=87.8

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccc---cCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVR---TSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~---~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      ..+|.++|.+..|||||+-...+...-..   .-..-.+.+.+.....+..+.+||..|..+             +....
T Consensus        20 slkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~-------------~~n~l   86 (205)
T KOG1673|consen   20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQRE-------------FINML   86 (205)
T ss_pred             EEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHh-------------hhccC
Confidence            36899999999999999988777621000   001111111122222356688999999632             11111


Q ss_pred             HhcccccceEEEEEeCCCCCCcc-hHHHHHHHHhhC---CcEEEEEecCCCCC---chHHHHHHHHHHHHHHhcCCCCCC
Q 024325          169 VSTRVSLKRVCLLIDTKWGVKPR-DHELISLMERSQ---TKYQVVLTKTDTVF---PIDVARRAMQIEESLKANNSLVQP  241 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~~~~~~-~~~~~~~l~~~~---~p~iiv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~  241 (269)
                      --.-..+-+++|++|-....+-. -.++.++....+   +| |+|.+|-|+.-   ++.............   .....+
T Consensus        87 Piac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YA---k~mnAs  162 (205)
T KOG1673|consen   87 PIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYA---KVMNAS  162 (205)
T ss_pred             ceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHH---HHhCCc
Confidence            11223367789999976432221 123333333332   34 56799998752   322222221111111   223688


Q ss_pred             eEEeeCCCCCCHHHHHHHHHHhh
Q 024325          242 VMMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       242 vi~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      .+++|+-...|+..++..+-..+
T Consensus       163 L~F~Sts~sINv~KIFK~vlAkl  185 (205)
T KOG1673|consen  163 LFFCSTSHSINVQKIFKIVLAKL  185 (205)
T ss_pred             EEEeeccccccHHHHHHHHHHHH
Confidence            99999999999999998765443

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=98.43  E-value=1.9e-05  Score=67.58  Aligned_cols=60  Identities=17%  Similarity=0.060  Sum_probs=42.0

Q ss_pred             hCCcEEEEEecCCCCCch---------HHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325          202 SQTKYQVVLTKTDTVFPI---------DVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       202 ~~~p~iiv~NK~Dl~~~~---------~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      .++|+++|++|||.+.--         ....+...++++.-.   .+...|++|+|...|++-|..+|....
T Consensus       221 lGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr---~GaaLiyTSvKE~KNidllyKYivhr~  289 (473)
T KOG3905|consen  221 LGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLR---YGAALIYTSVKETKNIDLLYKYIVHRS  289 (473)
T ss_pred             CCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHH---cCceeEEeecccccchHHHHHHHHHHh
Confidence            368899999999995421         122223333333322   257789999999999999999998754

>PRK13796 GTPase YqeH; Provisional

Probab=98.40  E-value=3.9e-06  Score=74.84  Aligned_cols=93  Identities=15%  Similarity=0.036  Sum_probs=56.6

Q ss_pred             hcccccc-eEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchH-HHHHHHHHHHHHHhcCCCCCCeEEeeC
Q 024325          170 STRVSLK-RVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID-VARRAMQIEESLKANNSLVQPVMMVSS  247 (269)
Q Consensus       170 ~~~~~~d-~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~vi~vSa  247 (269)
                      ......+ +|++|+|+.+........+.+..  .+.|+++|+||+|+.+... ..+....+.............++.+||
T Consensus        64 ~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~--~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSA  141 (365)
T PRK13796         64 NGIGDSDALVVNVVDIFDFNGSWIPGLHRFV--GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISA  141 (365)
T ss_pred             HhhcccCcEEEEEEECccCCCchhHHHHHHh--CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEEC
Confidence            3334455 89999998753322222222222  2689999999999986432 122222222222222111236899999


Q ss_pred             CCCCCHHHHHHHHHHhh
Q 024325          248 KSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       248 ~~g~gi~~L~~~i~~~~  264 (269)
                      ++|.|+++|++.|.+..
T Consensus       142 k~g~gI~eL~~~I~~~~  158 (365)
T PRK13796        142 QKGHGIDELLEAIEKYR  158 (365)
T ss_pred             CCCCCHHHHHHHHHHhc
Confidence            99999999999997653

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=98.37  E-value=3e-06  Score=74.84  Aligned_cols=134  Identities=18%  Similarity=0.229  Sum_probs=73.2

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCc---CccccCCCCC-----------c------eeEeeE-----------------
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQW---GVVRTSDKPG-----------L------TQTINF-----------------  133 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~---~~~~~s~~~g-----------t------t~~~~~-----------------  133 (269)
                      ..|..++.|+-|||||||+|.++...   +++.+.+..|           .      ...+..                 
T Consensus         3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~~iavi~Ne~G~~~ID~~ll~~~~~~~~~~~~v~el~nGCiCCs~~~dl~~~   82 (341)
T TIGR02475         3 KIPVTIVTGFLGAGKTTLIRHLLQNAAGRRIAVIVNEFGDLGIDGEILKACGIEGCSEENIVELANGCICCTVADDFIPT   82 (341)
T ss_pred             ccCEEEEEECCCCCHHHHHHHHHhccCCCcEEEEECCCccccchHHHHhccccccCCcceEEEeCCCCccccCcHHHHHH
Confidence            35789999999999999999998531   1222211111           0      001100                 


Q ss_pred             ------EEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcc----------------
Q 024325          134 ------FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPR----------------  191 (269)
Q Consensus       134 ------~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~----------------  191 (269)
                            ....+...++.|.|+.++.   .+...+   ....+...-..|.++.|+|+.......                
T Consensus        83 l~~l~~~~~~~d~IvIEtsG~a~P~---~i~~~~---~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~  156 (341)
T TIGR02475        83 MTKLLARRQRPDHILIETSGLALPK---PLVQAF---QWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADD  156 (341)
T ss_pred             HHHHHhccCCCCEEEEeCCCCCCHH---HHHHHh---cCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccc
Confidence                  0113568899999987641   121111   001111222478899999997432100                


Q ss_pred             ----hHHHHHH-HHhhCCcEEEEEecCCCCCchHHHHHHHHHHH
Q 024325          192 ----DHELISL-MERSQTKYQVVLTKTDTVFPIDVARRAMQIEE  230 (269)
Q Consensus       192 ----~~~~~~~-l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~  230 (269)
                          ...+... ..+....-++|+||+|+.++.++....+.++.
T Consensus       157 ~~~~~~~~~~~~~~Qi~~AD~IvlnK~Dl~~~~~l~~~~~~l~~  200 (341)
T TIGR02475       157 NLDHETPLEELFEDQLACADLVILNKADLLDAAGLARVRAEIAA  200 (341)
T ss_pred             cccccchHHHHHHHHHHhCCEEEEeccccCCHHHHHHHHHHHHH
Confidence                0000111 12223446899999999988777666555544

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=98.34  E-value=1e-05  Score=70.69  Aligned_cols=120  Identities=16%  Similarity=0.193  Sum_probs=66.1

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCc---CccccCCCCC-c----------eeEeeE-------EE--------------
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQW---GVVRTSDKPG-L----------TQTINF-------FK--------------  135 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~---~~~~~s~~~g-t----------t~~~~~-------~~--------------  135 (269)
                      ..|..++.|.-|||||||+|.++...   +++.+.+..| +          ..++..       ..              
T Consensus         3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~v~iD~~ll~~~~~~v~eL~~GCiCCs~~~~l~~~l~~l~~   82 (318)
T PRK11537          3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLD   82 (318)
T ss_pred             ccCEEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCCccccHHHHhCcCceEEEECCCEEEEccCchHHHHHHHHHH
Confidence            46899999999999999999998541   2222222222 0          001100       00              


Q ss_pred             ------eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcch--HHHHHHHHhhCCcEE
Q 024325          136 ------LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERSQTKYQ  207 (269)
Q Consensus       136 ------~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~--~~~~~~l~~~~~p~i  207 (269)
                            ..+...+|.|.|..++.   .+.+.+  +....+...-..+.++.|+|+.......+  .....++   ...-+
T Consensus        83 ~~~~~~~~~d~IvIEttG~a~p~---~i~~~~--~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi---~~AD~  154 (318)
T PRK11537         83 NLDKGNIQFDRLVIECTGMADPG---PIIQTF--FSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQV---GYADR  154 (318)
T ss_pred             HHhccCCCCCEEEEECCCccCHH---HHHHHH--hcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHH---HhCCE
Confidence                  02567899999986531   111111  00111122223688999999975322211  1122223   33458


Q ss_pred             EEEecCCCCCc
Q 024325          208 VVLTKTDTVFP  218 (269)
Q Consensus       208 iv~NK~Dl~~~  218 (269)
                      +|+||+|+.++
T Consensus       155 IvlnK~Dl~~~  165 (318)
T PRK11537        155 ILLTKTDVAGE  165 (318)
T ss_pred             EEEeccccCCH
Confidence            99999999974

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=98.32  E-value=4.2e-05  Score=70.05  Aligned_cols=61  Identities=13%  Similarity=-0.035  Sum_probs=42.7

Q ss_pred             CCcEEEEEecCCCCCc---------hHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325          203 QTKYQVVLTKTDTVFP---------IDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       203 ~~p~iiv~NK~Dl~~~---------~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      ++|++||++|+|....         ....-+++.++...-.+   +..+|++|++...+++.|+..|...+-.
T Consensus       196 Gipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~y---GAsL~yts~~~~~n~~~L~~yi~h~l~~  265 (472)
T PF05783_consen  196 GIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKY---GASLIYTSVKEEKNLDLLYKYILHRLYG  265 (472)
T ss_pred             CcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhc---CCeEEEeeccccccHHHHHHHHHHHhcc
Confidence            5799999999998642         11223334444433333   5678999999999999999998776543

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=98.30  E-value=1e-07  Score=74.78  Aligned_cols=154  Identities=14%  Similarity=0.151  Sum_probs=90.4

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCC---CceeEeeEEEe----CCcEEEEcCCCCCCcchhHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP---GLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEEL  164 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~---gtt~~~~~~~~----~~~~~lvDtpG~~~~~~~~~~~~~~~~~  164 (269)
                      ..++.++|+-++||||++.+.+...   +...+.   |..........    -.+..+||.+|..          .+..|
T Consensus        25 L~k~lVig~~~vgkts~i~ryv~~n---fs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQe----------rfg~m   91 (229)
T KOG4423|consen   25 LFKVLVIGDLGVGKTSSIKRYVHQN---FSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQE----------RFGNM   91 (229)
T ss_pred             hhhhheeeeccccchhHHHHHHHHH---HHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhh----------hhcce
Confidence            4579999999999999998876541   111111   11111111111    1246799999962          22233


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh-------hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcC
Q 024325          165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANN  236 (269)
Q Consensus       165 ~~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~-------~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~  236 (269)
                      ..-|+   +.++...+|+|.+...+... ..+.+.+..       ..+|+++..||||.-..... .....+.+...+  
T Consensus        92 trVyy---kea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~-~~~~~~d~f~ke--  165 (229)
T KOG4423|consen   92 TRVYY---KEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKN-EATRQFDNFKKE--  165 (229)
T ss_pred             EEEEe---cCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhh-hhHHHHHHHHhc--
Confidence            22222   23788889999886655443 122222211       24578999999998643222 212222222222  


Q ss_pred             CCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325          237 SLVQPVMMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       237 ~~~~~vi~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      ......+.+|+|.+.++++....+.+..
T Consensus       166 ngf~gwtets~Kenkni~Ea~r~lVe~~  193 (229)
T KOG4423|consen  166 NGFEGWTETSAKENKNIPEAQRELVEKI  193 (229)
T ss_pred             cCccceeeeccccccChhHHHHHHHHHH
Confidence            2356789999999999999998887654

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=98.29  E-value=7.6e-06  Score=65.84  Aligned_cols=123  Identities=15%  Similarity=0.177  Sum_probs=67.1

Q ss_pred             CcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccc-eEEEEEeCCCCCCcch-----HHHHHHHHhhCCcEEEEEe
Q 024325          138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLK-RVCLLIDTKWGVKPRD-----HELISLMERSQTKYQVVLT  211 (269)
Q Consensus       138 ~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~vl~vid~~~~~~~~~-----~~~~~~l~~~~~p~iiv~N  211 (269)
                      ..+.++|+||..+-+..-.+   ...+++...+ . +.. .++|++|+..-.....     ...+.......+|.|=|++
T Consensus        98 ddylifDcPGQIELytH~pV---m~~iv~hl~~-~-~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvls  172 (273)
T KOG1534|consen   98 DDYLIFDCPGQIELYTHLPV---MPQIVEHLKQ-W-NFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLS  172 (273)
T ss_pred             CCEEEEeCCCeeEEeecChh---HHHHHHHHhc-c-cCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhh
Confidence            34899999998764322211   1222222211 1 122 3567777653221111     1222333445799999999


Q ss_pred             cCCCCCchHHHHHH---------------------------HHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325          212 KTDTVFPIDVARRA---------------------------MQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       212 K~Dl~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      |+||+......+..                           +.+...+..+  .-...+|..+...+.++.++..|-..+
T Consensus       173 KMDLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~--~Mv~FlPl~~~~eeSi~~iL~~ID~ai  250 (273)
T KOG1534|consen  173 KMDLLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDY--SMVNFLPLDSSDEESINIILSYIDDAI  250 (273)
T ss_pred             HHHHhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccc--cceeeeecCCCCHHHHHHHHHHHHHHH
Confidence            99998652211110                           0111111111  123567888888899999999998888


Q ss_pred             hhh
Q 024325          265 RFA  267 (269)
Q Consensus       265 ~~~  267 (269)
                      ++.
T Consensus       251 Qy~  253 (273)
T KOG1534|consen  251 QYG  253 (273)
T ss_pred             Hhc
Confidence            775

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.29  E-value=5.6e-06  Score=65.92  Aligned_cols=55  Identities=16%  Similarity=0.122  Sum_probs=43.2

Q ss_pred             ceEEEEEeCCCCCCcchHHHHHH--HHhhCCcEEEEEecCCCCCchHHHHHHHHHHH
Q 024325          176 KRVCLLIDTKWGVKPRDHELISL--MERSQTKYQVVLTKTDTVFPIDVARRAMQIEE  230 (269)
Q Consensus       176 d~vl~vid~~~~~~~~~~~~~~~--l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~  230 (269)
                      |++++|+|+..++...+..+.+.  +...++|+++|+||+|+.++.......+.+.+
T Consensus         1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~   57 (172)
T cd04178           1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKENVEKWLKYLRR   57 (172)
T ss_pred             CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCHHHHHHHHHHHHh
Confidence            78999999998888877788777  44557899999999999887665555555543

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd00066 G-alpha G protein alpha subunit

Probab=98.27  E-value=9.9e-06  Score=70.94  Aligned_cols=117  Identities=15%  Similarity=0.131  Sum_probs=71.4

Q ss_pred             CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCc--ch---------HHHHHHHHh----
Q 024325          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKP--RD---------HELISLMER----  201 (269)
Q Consensus       137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~--~~---------~~~~~~l~~----  201 (269)
                      +..+.+||++|...      .+..|..+.       ..+++++||+|.++-...  .+         ...++.+-.    
T Consensus       160 ~~~~~~~DvgGq~~------~R~kW~~~f-------~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~  226 (317)
T cd00066         160 NLKFRMFDVGGQRS------ERKKWIHCF-------EDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWF  226 (317)
T ss_pred             ceEEEEECCCCCcc------cchhHHHHh-------CCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccc
Confidence            34588999999632      233444332       349999999998752111  00         122222222    


Q ss_pred             hCCcEEEEEecCCCCC------------------chHHHHHHHHHHHHHHhcCC---CCCCeEEeeCCCCCCHHHHHHHH
Q 024325          202 SQTKYQVVLTKTDTVF------------------PIDVARRAMQIEESLKANNS---LVQPVMMVSSKSGAGIRSLRTVL  260 (269)
Q Consensus       202 ~~~p~iiv~NK~Dl~~------------------~~~~~~~~~~~~~~~~~~~~---~~~~vi~vSa~~g~gi~~L~~~i  260 (269)
                      .+.|+++++||.|+..                  +.+.......+...+.....   ...-+..++|..-.++..+++.+
T Consensus       227 ~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v  306 (317)
T cd00066         227 ANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAV  306 (317)
T ss_pred             cCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHH
Confidence            3689999999999642                  22344555555555544321   12234568888889999999988


Q ss_pred             HHhhhh
Q 024325          261 SKIARF  266 (269)
Q Consensus       261 ~~~~~~  266 (269)
                      .+.+.+
T Consensus       307 ~~~i~~  312 (317)
T cd00066         307 KDIILQ  312 (317)
T ss_pred             HHHHHH
Confidence            887654

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.25  E-value=2.9e-07  Score=80.66  Aligned_cols=127  Identities=20%  Similarity=0.234  Sum_probs=85.3

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCc----cccC------------CCCCceeE---eeEEEeCCcEEEEcCCCCCCcc
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGV----VRTS------------DKPGLTQT---INFFKLGTKLCLVDLPGYGFAY  152 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~----~~~s------------~~~gtt~~---~~~~~~~~~~~lvDtpG~~~~~  152 (269)
                      ..+|+++....+||||.-.+++--...    ..+.            ...|.|-.   +++.+.|..+.++||||..+-.
T Consensus        37 irnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~  116 (753)
T KOG0464|consen   37 IRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFR  116 (753)
T ss_pred             hhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEE
Confidence            347999999999999998886532100    0011            12233322   3455568899999999975421


Q ss_pred             hhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHH
Q 024325          153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESL  232 (269)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~  232 (269)
                      .  ++           -+++...|.++.|+|++.+...+..-++.....+++|.++.+||+|..... .+.....+.+.+
T Consensus       117 l--ev-----------erclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~an-fe~avdsi~ekl  182 (753)
T KOG0464|consen  117 L--EV-----------ERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAAN-FENAVDSIEEKL  182 (753)
T ss_pred             E--EH-----------HHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhhhh-hhhHHHHHHHHh
Confidence            1  11           112223899999999999999888888888888899999999999987543 344444555544

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=98.25  E-value=2.2e-05  Score=71.36  Aligned_cols=96  Identities=22%  Similarity=0.240  Sum_probs=49.4

Q ss_pred             CcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhC--Cc-EEEEEecCC
Q 024325          138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ--TK-YQVVLTKTD  214 (269)
Q Consensus       138 ~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~--~p-~iiv~NK~D  214 (269)
                      ..++++||||....  .+.   ...++. .+ .....+|.+++|+|+..+  .   +.++......  .+ .-+|+||.|
T Consensus       176 ~DvVIIDTAGr~~~--d~~---lm~El~-~l-~~~~~pdevlLVvda~~g--q---~av~~a~~F~~~l~i~gvIlTKlD  243 (437)
T PRK00771        176 ADVIIVDTAGRHAL--EED---LIEEMK-EI-KEAVKPDEVLLVIDATIG--Q---QAKNQAKAFHEAVGIGGIIITKLD  243 (437)
T ss_pred             CCEEEEECCCcccc--hHH---HHHHHH-HH-HHHhcccceeEEEecccc--H---HHHHHHHHHHhcCCCCEEEEeccc
Confidence            36899999997542  111   111111 11 111237889999998754  1   2233333322  33 357899999


Q ss_pred             CCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHH
Q 024325          215 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL  256 (269)
Q Consensus       215 l~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L  256 (269)
                      -.......  .. +.   .   ....|+.+++.  |+.+++|
T Consensus       244 ~~a~~G~~--ls-~~---~---~~~~Pi~fig~--Ge~v~Dl  274 (437)
T PRK00771        244 GTAKGGGA--LS-AV---A---ETGAPIKFIGT--GEKIDDL  274 (437)
T ss_pred             CCCcccHH--HH-HH---H---HHCcCEEEEec--CCCcccC
Confidence            76433221  11 11   1   12578877765  4545444

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.23  E-value=1.8e-06  Score=79.05  Aligned_cols=118  Identities=17%  Similarity=0.197  Sum_probs=81.7

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcCcC-ccccCCC--CCceeEe----------------eEEEeCCcEEEEcCCCCCC
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQWG-VVRTSDK--PGLTQTI----------------NFFKLGTKLCLVDLPGYGF  150 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~-~~~~s~~--~gtt~~~----------------~~~~~~~~~~lvDtpG~~~  150 (269)
                      ....+|.+.-+-.+||||+-++++-... .......  .+++.|.                .+.+.+..+.+|||||+.+
T Consensus        37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD  116 (721)
T KOG0465|consen   37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD  116 (721)
T ss_pred             hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence            3456899999999999999998763210 1111111  1233321                1222367899999999854


Q ss_pred             cchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchH
Q 024325          151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID  220 (269)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~  220 (269)
                      -             ..+..+.+...|..++|+|+..+.+.+..-+..++...++|.+..+||+|.....-
T Consensus       117 F-------------T~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa~~  173 (721)
T KOG0465|consen  117 F-------------TFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGASP  173 (721)
T ss_pred             E-------------EEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcCCCh
Confidence            2             11122223348999999999989999998888999999999999999999987654

>cd03114 ArgK-like The function of this protein family is unkown

Probab=98.23  E-value=5.6e-06  Score=64.29  Aligned_cols=20  Identities=35%  Similarity=0.642  Sum_probs=17.8

Q ss_pred             EEEEcCCCCChHHHHHHHhc
Q 024325           95 IAFAGRSNVGKSSMLNALTR  114 (269)
Q Consensus        95 v~ivG~~~~GKSsLin~l~~  114 (269)
                      +.++|.+|+||||++..+..
T Consensus         2 i~~~G~~GsGKTt~~~~l~~   21 (148)
T cd03114           2 IGITGVPGAGKSTLIDALIT   21 (148)
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78999999999999988764

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.20  E-value=2.7e-05  Score=63.37  Aligned_cols=71  Identities=23%  Similarity=0.289  Sum_probs=38.1

Q ss_pred             CcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchH-HHHHHHHhhCCcEEEEEecCCCC
Q 024325          138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMERSQTKYQVVLTKTDTV  216 (269)
Q Consensus       138 ~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~-~~~~~l~~~~~p~iiv~NK~Dl~  216 (269)
                      ..+.+|||||.....  ....+.+..+    .... ..+-+++|++++.+  ..+. .+.......+ +--++++|.|-.
T Consensus        84 ~D~vlIDT~Gr~~~d--~~~~~el~~~----~~~~-~~~~~~LVlsa~~~--~~~~~~~~~~~~~~~-~~~lIlTKlDet  153 (196)
T PF00448_consen   84 YDLVLIDTAGRSPRD--EELLEELKKL----LEAL-NPDEVHLVLSATMG--QEDLEQALAFYEAFG-IDGLILTKLDET  153 (196)
T ss_dssp             SSEEEEEE-SSSSTH--HHHHHHHHHH----HHHH-SSSEEEEEEEGGGG--GHHHHHHHHHHHHSS-TCEEEEESTTSS
T ss_pred             CCEEEEecCCcchhh--HHHHHHHHHH----hhhc-CCccceEEEecccC--hHHHHHHHHHhhccc-CceEEEEeecCC
Confidence            569999999986431  1111122222    2222 36789999998743  2222 2333333223 345679999987


Q ss_pred             Cc
Q 024325          217 FP  218 (269)
Q Consensus       217 ~~  218 (269)
                      ..
T Consensus       154 ~~  155 (196)
T PF00448_consen  154 AR  155 (196)
T ss_dssp             ST
T ss_pred             CC
Confidence            54

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]

Probab=98.18  E-value=3.8e-05  Score=65.06  Aligned_cols=138  Identities=16%  Similarity=0.193  Sum_probs=75.9

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHhcCc---CccccCCCCCceeE------------------------eeEEE-----
Q 024325           88 PAPDLPEIAFAGRSNVGKSSMLNALTRQW---GVVRTSDKPGLTQT------------------------INFFK-----  135 (269)
Q Consensus        88 ~~~~~~~v~ivG~~~~GKSsLin~l~~~~---~~~~~s~~~gtt~~------------------------~~~~~-----  135 (269)
                      +....|.-.+.|+-|||||||+|.++...   +++-.-+.-|-..+                        +...+     
T Consensus        53 ~~~rIPvtIITGyLGaGKtTLLn~Il~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtVk~~g  132 (391)
T KOG2743|consen   53 LGARIPVTIITGYLGAGKTTLLNYILTGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTVKDNG  132 (391)
T ss_pred             CCCccceEEEEecccCChHHHHHHHHccCCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEecchH
Confidence            44567899999999999999999987531   22221111110000                        11111     


Q ss_pred             -----------eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcch-----HHHHHHH
Q 024325          136 -----------LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-----HELISLM  199 (269)
Q Consensus       136 -----------~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~-----~~~~~~l  199 (269)
                                 ......++.|.|+..+..--.  ..|   ...-+..--..|.++-|+|+.+....-+     -.+-+..
T Consensus       133 vraie~lvqkkGkfD~IllETTGlAnPaPia~--~Fw---~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~  207 (391)
T KOG2743|consen  133 VRAIENLVQKKGKFDHILLETTGLANPAPIAS--MFW---LDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEAT  207 (391)
T ss_pred             HHHHHHHHhcCCCcceEEEeccCCCCcHHHHH--HHh---hhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHH
Confidence                       123478999999966522110  011   1121222223789999999975322111     1111222


Q ss_pred             HhhCCcEEEEEecCCCCCchHHHHHHHHHHH
Q 024325          200 ERSQTKYQVVLTKTDTVFPIDVARRAMQIEE  230 (269)
Q Consensus       200 ~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~  230 (269)
                      .+....--+++||.|+++..++....+.++.
T Consensus       208 ~QiA~AD~II~NKtDli~~e~~~~l~q~I~~  238 (391)
T KOG2743|consen  208 RQIALADRIIMNKTDLVSEEEVKKLRQRIRS  238 (391)
T ss_pred             HHHhhhheeeeccccccCHHHHHHHHHHHHH
Confidence            2222334678999999998877776666554

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.14  E-value=5.2e-06  Score=73.69  Aligned_cols=24  Identities=25%  Similarity=0.328  Sum_probs=20.7

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .-.++++|++|+||||++..|...
T Consensus       137 g~ii~lvGptGvGKTTtiakLA~~  160 (374)
T PRK14722        137 GGVFALMGPTGVGKTTTTAKLAAR  160 (374)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            347999999999999999988753

>PRK10867 signal recognition particle protein; Provisional

Probab=98.07  E-value=0.00012  Score=66.36  Aligned_cols=99  Identities=21%  Similarity=0.291  Sum_probs=48.4

Q ss_pred             CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCc-EEEEEecCCC
Q 024325          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDT  215 (269)
Q Consensus       137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p-~iiv~NK~Dl  215 (269)
                      +..+.++||||....  .+..-.....+..    . ...+.+++|+|+..+  ............ ..+ .-+|+||.|-
T Consensus       183 ~~DvVIIDTaGrl~~--d~~lm~eL~~i~~----~-v~p~evllVlda~~g--q~av~~a~~F~~-~~~i~giIlTKlD~  252 (433)
T PRK10867        183 GYDVVIVDTAGRLHI--DEELMDELKAIKA----A-VNPDEILLVVDAMTG--QDAVNTAKAFNE-ALGLTGVILTKLDG  252 (433)
T ss_pred             CCCEEEEeCCCCccc--CHHHHHHHHHHHH----h-hCCCeEEEEEecccH--HHHHHHHHHHHh-hCCCCEEEEeCccC
Confidence            356999999997532  1111111112211    1 136778999997521  111222222222 232 4578899996


Q ss_pred             CCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHH
Q 024325          216 VFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL  256 (269)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L  256 (269)
                      .......   -.+...      ...|+.+++.  |+++++|
T Consensus       253 ~~rgG~a---lsi~~~------~~~PI~fig~--Ge~v~DL  282 (433)
T PRK10867        253 DARGGAA---LSIRAV------TGKPIKFIGT--GEKLDDL  282 (433)
T ss_pred             cccccHH---HHHHHH------HCcCEEEEeC--CCccccC
Confidence            5432221   111111      1478777765  4555544

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=98.04  E-value=2.1e-05  Score=64.48  Aligned_cols=45  Identities=20%  Similarity=0.233  Sum_probs=32.5

Q ss_pred             ccccceEEEEEeCCCCCCcchHHHHHHHHhhC-CcEEEEEecCCCC
Q 024325          172 RVSLKRVCLLIDTKWGVKPRDHELISLMERSQ-TKYQVVLTKTDTV  216 (269)
Q Consensus       172 ~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~-~p~iiv~NK~Dl~  216 (269)
                      ...+|.+++|+|++..--.....+-+...+.+ +++.+|+||+|-.
T Consensus       153 ~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~  198 (255)
T COG3640         153 IEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE  198 (255)
T ss_pred             ccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence            34599999999987532333345555556677 8999999999954

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.02  E-value=0.00012  Score=67.53  Aligned_cols=23  Identities=26%  Similarity=0.417  Sum_probs=20.2

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhc
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTR  114 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~  114 (269)
                      ...|+|+|++|+||||++..|..
T Consensus       350 G~vIaLVGPtGvGKTTtaakLAa  372 (559)
T PRK12727        350 GGVIALVGPTGAGKTTTIAKLAQ  372 (559)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999988764

>TIGR00959 ffh signal recognition particle protein

Probab=97.98  E-value=0.00018  Score=65.29  Aligned_cols=100  Identities=20%  Similarity=0.241  Sum_probs=49.4

Q ss_pred             CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCC
Q 024325          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  216 (269)
Q Consensus       137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~  216 (269)
                      +..+.++||||....  .+..-.....+    .. ....+.+++|+|+..+  .............-...-+|+||.|-.
T Consensus       182 ~~DvVIIDTaGr~~~--d~~l~~eL~~i----~~-~~~p~e~lLVvda~tg--q~~~~~a~~f~~~v~i~giIlTKlD~~  252 (428)
T TIGR00959       182 GFDVVIVDTAGRLQI--DEELMEELAAI----KE-ILNPDEILLVVDAMTG--QDAVNTAKTFNERLGLTGVVLTKLDGD  252 (428)
T ss_pred             CCCEEEEeCCCcccc--CHHHHHHHHHH----HH-hhCCceEEEEEeccch--HHHHHHHHHHHhhCCCCEEEEeCccCc
Confidence            456999999997442  11111111122    11 1236788999998632  222223333322112245779999965


Q ss_pred             CchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHH
Q 024325          217 FPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL  256 (269)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L  256 (269)
                      ......   ..+...      ...|+.+++.  |+.+++|
T Consensus       253 ~~~G~~---lsi~~~------~~~PI~fi~~--Ge~i~dl  281 (428)
T TIGR00959       253 ARGGAA---LSVRSV------TGKPIKFIGV--GEKIDDL  281 (428)
T ss_pred             ccccHH---HHHHHH------HCcCEEEEeC--CCChhhC
Confidence            432221   111111      1477777765  4555554

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PRK01889 GTPase RsgA; Reviewed

Probab=97.94  E-value=6.7e-06  Score=73.10  Aligned_cols=57  Identities=30%  Similarity=0.324  Sum_probs=38.3

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCC-------CCceeEeeEEEeCCcEEEEcCCCCCC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK-------PGLTQTINFFKLGTKLCLVDLPGYGF  150 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~-------~gtt~~~~~~~~~~~~~lvDtpG~~~  150 (269)
                      -.++++|.+|+|||||+|.|++... ..++.+       ..+|.............++||||+..
T Consensus       196 ~~~~lvG~sgvGKStLin~L~g~~~-~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~DtpG~~~  259 (356)
T PRK01889        196 KTVALLGSSGVGKSTLVNALLGEEV-QKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDTPGMRE  259 (356)
T ss_pred             CEEEEECCCCccHHHHHHHHHHhcc-cceeeEEECCCCCcchhhhccEEEecCCCeecCCCchhh
Confidence            4799999999999999999998632 222221       12444444444444457889999854

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.93  E-value=0.00013  Score=65.03  Aligned_cols=117  Identities=26%  Similarity=0.357  Sum_probs=61.8

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCc-----CccccCCCCCc------------eeEeeEE---------------E--eC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKPGL------------TQTINFF---------------K--LG  137 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~-----~~~~~s~~~gt------------t~~~~~~---------------~--~~  137 (269)
                      ...|+++|++|+||||++..|....     .+..++..+..            ..++.+.               .  .+
T Consensus       241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~  320 (436)
T PRK11889        241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR  320 (436)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence            3589999999999999999886421     12222211110            0000000               0  13


Q ss_pred             CcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHhhCCcEEEEEecCCCC
Q 024325          138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERSQTKYQVVLTKTDTV  216 (269)
Q Consensus       138 ~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~~~~p~iiv~NK~Dl~  216 (269)
                      ..++||||||..... ...+    .++ ..+... ...+.+++|+|+..  ...+ ..+++..... ..--+++||.|-.
T Consensus       321 ~DvVLIDTaGRs~kd-~~lm----~EL-~~~lk~-~~PdevlLVLsATt--k~~d~~~i~~~F~~~-~idglI~TKLDET  390 (436)
T PRK11889        321 VDYILIDTAGKNYRA-SETV----EEM-IETMGQ-VEPDYICLTLSASM--KSKDMIEIITNFKDI-HIDGIVFTKFDET  390 (436)
T ss_pred             CCEEEEeCccccCcC-HHHH----HHH-HHHHhh-cCCCeEEEEECCcc--ChHHHHHHHHHhcCC-CCCEEEEEcccCC
Confidence            579999999975421 1112    222 122221 12567888898752  2222 3344433332 2345789999987


Q ss_pred             Cc
Q 024325          217 FP  218 (269)
Q Consensus       217 ~~  218 (269)
                      ..
T Consensus       391 ~k  392 (436)
T PRK11889        391 AS  392 (436)
T ss_pred             CC
Confidence            54

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.93  E-value=8.4e-05  Score=67.08  Aligned_cols=25  Identities=24%  Similarity=0.303  Sum_probs=21.4

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcC
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..-.|+++|++|+||||++..|.+.
T Consensus       190 ~g~vi~lvGpnG~GKTTtlakLA~~  214 (420)
T PRK14721        190 QGGVYALIGPTGVGKTTTTAKLAAR  214 (420)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3458999999999999999987753

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=97.93  E-value=1.6e-05  Score=71.50  Aligned_cols=111  Identities=21%  Similarity=0.252  Sum_probs=74.3

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccC-CCCCceeE---------------e----eEEE---------------
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTS-DKPGLTQT---------------I----NFFK---------------  135 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s-~~~gtt~~---------------~----~~~~---------------  135 (269)
                      +..++.++.+...|||||-.+|..+.  .+++ ...|-|+-               .    .++.               
T Consensus        18 NiRNmSVIAHVDHGKSTLTDsLV~kA--gIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~   95 (842)
T KOG0469|consen   18 NIRNMSVIAHVDHGKSTLTDSLVQKA--GIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDG   95 (842)
T ss_pred             ccccceEEEEecCCcchhhHHHHHhh--ceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCC
Confidence            34578888899999999999998763  2222 22221111               0    0110               


Q ss_pred             eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCC
Q 024325          136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDT  215 (269)
Q Consensus       136 ~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl  215 (269)
                      .+.-+.++|.||+.+             +..+.-..+...|..++|+|+-.+.--+.+-++.+.-..++.-++|+||+|.
T Consensus        96 ~~FLiNLIDSPGHVD-------------FSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DR  162 (842)
T KOG0469|consen   96 NGFLINLIDSPGHVD-------------FSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDR  162 (842)
T ss_pred             cceeEEeccCCCccc-------------chhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehhhH
Confidence            123488999999844             2233334445579999999998888888877777666667767788999997


Q ss_pred             C
Q 024325          216 V  216 (269)
Q Consensus       216 ~  216 (269)
                      .
T Consensus       163 A  163 (842)
T KOG0469|consen  163 A  163 (842)
T ss_pred             H
Confidence            5

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=97.92  E-value=3.8e-05  Score=70.34  Aligned_cols=152  Identities=17%  Similarity=0.153  Sum_probs=79.3

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCC----CCceeEeeEEE-eCCcEEEEcCCCCCCcchhHHHHHHHHHH
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK----PGLTQTINFFK-LGTKLCLVDLPGYGFAYAKEEVKDAWEEL  164 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~----~gtt~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~~  164 (269)
                      .+...+.++|+.|+|||.|+++++|+ .+.. ++.    +..+.+..... ....+.+-|.+-. ..           .+
T Consensus       423 R~Vf~C~V~G~k~~GKs~lL~sflgr-~~~~-~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~-----------~~  488 (625)
T KOG1707|consen  423 RKVFQCFVVGPKNCGKSALLQSFLGR-SMSD-NNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQ-----------DF  488 (625)
T ss_pred             ceeeeEEEEcCCcCchHHHHHHHhcc-cccc-ccccCCCCceeeeeeeeccccceEEEeecCcc-cc-----------cc
Confidence            45789999999999999999999997 3333 221    11222222111 1122333333321 00           00


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCcchHH-HHHH-HHhhCCcEEEEEecCCCCCchHHHHH-HHHHHHHHHhcCCCCCC
Q 024325          165 VKEYVSTRVSLKRVCLLIDTKWGVKPRDHE-LISL-MERSQTKYQVVLTKTDTVFPIDVARR-AMQIEESLKANNSLVQP  241 (269)
Q Consensus       165 ~~~~~~~~~~~d~vl~vid~~~~~~~~~~~-~~~~-l~~~~~p~iiv~NK~Dl~~~~~~~~~-~~~~~~~~~~~~~~~~~  241 (269)
                      ..   .....||+++++.|++++-...-.. +.+. -.....|+++|.+|+|+.+..+.-.. -..+.+.+    . ..+
T Consensus       489 l~---~ke~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~----~-i~~  560 (625)
T KOG1707|consen  489 LT---SKEAACDVACLVYDSSNPRSFEYLAEVYNKYFDLYKIPCLMVATKADLDEVPQRYSIQPDEFCRQL----G-LPP  560 (625)
T ss_pred             cc---CccceeeeEEEecccCCchHHHHHHHHHHHhhhccCCceEEEeeccccchhhhccCCChHHHHHhc----C-CCC
Confidence            00   0012399999999998432222111 1111 11246899999999999753211110 01111111    1 234


Q ss_pred             eEEeeCCCCCCHHHHHHHHHHhh
Q 024325          242 VMMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       242 vi~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      -+.+|+++... .+++..|....
T Consensus       561 P~~~S~~~~~s-~~lf~kL~~~A  582 (625)
T KOG1707|consen  561 PIHISSKTLSS-NELFIKLATMA  582 (625)
T ss_pred             CeeeccCCCCC-chHHHHHHHhh
Confidence            46788875322 77887776654

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=97.90  E-value=0.00022  Score=63.50  Aligned_cols=64  Identities=16%  Similarity=0.243  Sum_probs=42.0

Q ss_pred             HHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325          193 HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       193 ~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      .+.++.|+..++|+++++|-.+=.. .+.......+.+..      ..|+++++|.+-. -+++...+.+.+
T Consensus       170 ervI~ELk~igKPFvillNs~~P~s-~et~~L~~eL~ekY------~vpVlpvnc~~l~-~~DI~~Il~~vL  233 (492)
T PF09547_consen  170 ERVIEELKEIGKPFVILLNSTKPYS-EETQELAEELEEKY------DVPVLPVNCEQLR-EEDITRILEEVL  233 (492)
T ss_pred             HHHHHHHHHhCCCEEEEEeCCCCCC-HHHHHHHHHHHHHh------CCcEEEeehHHcC-HHHHHHHHHHHH
Confidence            5788889999999999999877433 33333344444432      5899999996543 445544444443

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=97.87  E-value=0.0005  Score=60.26  Aligned_cols=117  Identities=14%  Similarity=0.112  Sum_probs=69.5

Q ss_pred             CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCC--Ccch---------HHHHHHHHh----
Q 024325          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV--KPRD---------HELISLMER----  201 (269)
Q Consensus       137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~--~~~~---------~~~~~~l~~----  201 (269)
                      +..+.++|++|...      .+..|-       ....++++|+||+..+.-.  ...|         ..+.+.+-.    
T Consensus       194 ~~~f~~~DvGGQRs------eRrKWi-------hcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F  260 (354)
T KOG0082|consen  194 GLKFRMFDVGGQRS------ERKKWI-------HCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWF  260 (354)
T ss_pred             CCceEEEeCCCcHH------HhhhHH-------HhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCccc
Confidence            45689999999632      122333       3455699999999877421  1112         123333322    


Q ss_pred             hCCcEEEEEecCCCCCc-----------------hHHHHHHHHHHHHHHhcCCCC-CC--eEEeeCCCCCCHHHHHHHHH
Q 024325          202 SQTKYQVVLTKTDTVFP-----------------IDVARRAMQIEESLKANNSLV-QP--VMMVSSKSGAGIRSLRTVLS  261 (269)
Q Consensus       202 ~~~p~iiv~NK~Dl~~~-----------------~~~~~~~~~~~~~~~~~~~~~-~~--vi~vSa~~g~gi~~L~~~i~  261 (269)
                      .+.++|+.+||.|+...                 .........+...+....... .+  +..+.|..-.+|+.+++...
T Consensus       261 ~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~  340 (354)
T KOG0082|consen  261 ANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVT  340 (354)
T ss_pred             ccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHH
Confidence            25789999999999632                 123344455555444432211 22  33446777788899998888


Q ss_pred             Hhhhh
Q 024325          262 KIARF  266 (269)
Q Consensus       262 ~~~~~  266 (269)
                      +.+.+
T Consensus       341 d~Ii~  345 (354)
T KOG0082|consen  341 DTIIQ  345 (354)
T ss_pred             HHHHH
Confidence            87654

>KOG2484 consensus GTPase [General function prediction only]

Probab=97.86  E-value=8.9e-05  Score=65.12  Aligned_cols=69  Identities=19%  Similarity=0.130  Sum_probs=54.8

Q ss_pred             HHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHh-h-CCcEEEEEecCCCCCchHHHHHHHHHHHH
Q 024325          163 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER-S-QTKYQVVLTKTDTVFPIDVARRAMQIEES  231 (269)
Q Consensus       163 ~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~-~-~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~  231 (269)
                      .+...+....+.+|+|+.|+|+.+++.....++-+++.+ . ++..|+|+||+|+++.+.+.+...+++..
T Consensus       135 aY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~  205 (435)
T KOG2484|consen  135 AYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLVYLRRE  205 (435)
T ss_pred             HHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHHHHHHHHHHHhh
Confidence            344455556666999999999999888887777666642 2 38899999999999999988888887765

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.86  E-value=0.00019  Score=62.88  Aligned_cols=118  Identities=19%  Similarity=0.225  Sum_probs=61.9

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcCc-----Ccccc-------------------CCCCCceeEe-------------e
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQW-----GVVRT-------------------SDKPGLTQTI-------------N  132 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~~-----~~~~~-------------------s~~~gtt~~~-------------~  132 (269)
                      ...-.|.++|--|+||||.+-.|...+     ....+                   ..+|.++...             .
T Consensus        99 ~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~  178 (483)
T KOG0780|consen   99 GKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDR  178 (483)
T ss_pred             CCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHH
Confidence            444578999999999999887665321     11111                   1112111100             0


Q ss_pred             EEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHh-hCCcEEEEEe
Q 024325          133 FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER-SQTKYQVVLT  211 (269)
Q Consensus       133 ~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~-~~~p~iiv~N  211 (269)
                      +-..+..+.++||.|-...     ....+.++...  ...-..|-+++|+|++-+....  ......+. .++- -+++|
T Consensus       179 fKke~fdvIIvDTSGRh~q-----e~sLfeEM~~v--~~ai~Pd~vi~VmDasiGQaae--~Qa~aFk~~vdvg-~vIlT  248 (483)
T KOG0780|consen  179 FKKENFDVIIVDTSGRHKQ-----EASLFEEMKQV--SKAIKPDEIIFVMDASIGQAAE--AQARAFKETVDVG-AVILT  248 (483)
T ss_pred             HHhcCCcEEEEeCCCchhh-----hHHHHHHHHHH--HhhcCCCeEEEEEeccccHhHH--HHHHHHHHhhccc-eEEEE
Confidence            1112456999999996331     12344444322  1222379999999998553222  11111221 1222 35678


Q ss_pred             cCCCCC
Q 024325          212 KTDTVF  217 (269)
Q Consensus       212 K~Dl~~  217 (269)
                      |.|-..
T Consensus       249 KlDGha  254 (483)
T KOG0780|consen  249 KLDGHA  254 (483)
T ss_pred             ecccCC
Confidence            888653

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=97.86  E-value=3.1e-05  Score=68.03  Aligned_cols=158  Identities=18%  Similarity=0.223  Sum_probs=93.6

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHhcCcC----------------ccccC-------------CCCCceeEee---EEE
Q 024325           88 PAPDLPEIAFAGRSNVGKSSMLNALTRQWG----------------VVRTS-------------DKPGLTQTIN---FFK  135 (269)
Q Consensus        88 ~~~~~~~v~ivG~~~~GKSsLin~l~~~~~----------------~~~~s-------------~~~gtt~~~~---~~~  135 (269)
                      +.....+++|+|...+||||+-..++....                ...-+             ...|.|..+.   |.+
T Consensus        75 ~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEt  154 (501)
T KOG0459|consen   75 YPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFET  154 (501)
T ss_pred             CCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEe
Confidence            335567999999999999998766553210                00001             1122333322   223


Q ss_pred             eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCC-----CC--cchHHHHHHHHhhC-CcEE
Q 024325          136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-----VK--PRDHELISLMERSQ-TKYQ  207 (269)
Q Consensus       136 ~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~-----~~--~~~~~~~~~l~~~~-~p~i  207 (269)
                      ....+.+.|+||.             ..+...++.....+|+.++|+.+..+     +.  .+..+........+ ...|
T Consensus       155 e~~~ftiLDApGH-------------k~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lV  221 (501)
T KOG0459|consen  155 ENKRFTILDAPGH-------------KSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLI  221 (501)
T ss_pred             cceeEEeeccCcc-------------cccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEE
Confidence            3567999999997             34455666677779998888877432     11  12233333333334 4688


Q ss_pred             EEEecCCCCCc----hHHHHHHHHHHHHHHhc---CCCCCCeEEeeCCCCCCHHHHHH
Q 024325          208 VVLTKTDTVFP----IDVARRAMQIEESLKAN---NSLVQPVMMVSSKSGAGIRSLRT  258 (269)
Q Consensus       208 iv~NK~Dl~~~----~~~~~~~~~~~~~~~~~---~~~~~~vi~vSa~~g~gi~~L~~  258 (269)
                      +++||+|-...    +...+....+...+...   .......+++|..+|.++.+..+
T Consensus       222 v~vNKMddPtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~  279 (501)
T KOG0459|consen  222 VLINKMDDPTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD  279 (501)
T ss_pred             EEEEeccCCccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence            99999997642    12223333344444421   11234578999999999998765

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.83  E-value=0.00015  Score=64.31  Aligned_cols=24  Identities=33%  Similarity=0.495  Sum_probs=20.3

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ...|++||++|+||||-+-.|...
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar  226 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAAR  226 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHH
Confidence            457999999999999998776654

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.81  E-value=0.00033  Score=54.32  Aligned_cols=155  Identities=14%  Similarity=0.106  Sum_probs=76.2

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcC--ccccCCCCCceeEeeEEEeCCcEEEEcCC-CCC---------Ccc-hh--HH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWG--VVRTSDKPGLTQTINFFKLGTKLCLVDLP-GYG---------FAY-AK--EE  156 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~--~~~~s~~~gtt~~~~~~~~~~~~~lvDtp-G~~---------~~~-~~--~~  156 (269)
                      ..+|++.|+||+|||||+..+.+...  -..+...  .|..+........|.++|+. |-.         .+. ..  ..
T Consensus         5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf--~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~   82 (179)
T COG1618           5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGF--ITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVN   82 (179)
T ss_pred             ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeE--EeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEee
Confidence            45899999999999999988775410  0111111  23333221112336666665 321         110 00  00


Q ss_pred             HHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcch---HHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHH
Q 024325          157 VKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD---HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLK  233 (269)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~---~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~  233 (269)
                      +...+.-...........+|+++  ||---+.....   .+.++.+-..++|+|.++.+-+.- |     ..+.++..  
T Consensus        83 v~~le~i~~~al~rA~~~aDvII--IDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr~-P-----~v~~ik~~--  152 (179)
T COG1618          83 VEGLEEIAIPALRRALEEADVII--IDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSRH-P-----LVQRIKKL--  152 (179)
T ss_pred             HHHHHHHhHHHHHHHhhcCCEEE--EecccchhhccHHHHHHHHHHhcCCCcEEEEEecccCC-h-----HHHHhhhc--
Confidence            11222223333333333367654  55322222222   244444455689999999876652 1     12222221  


Q ss_pred             hcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325          234 ANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       234 ~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                           ..-+++   .+-+|-+.++..|...+..
T Consensus       153 -----~~v~v~---lt~~NR~~i~~~Il~~L~~  177 (179)
T COG1618         153 -----GGVYVF---LTPENRNRILNEILSVLKG  177 (179)
T ss_pred             -----CCEEEE---EccchhhHHHHHHHHHhcc
Confidence                 222232   5666777888888776654

>COG1162 Predicted GTPases [General function prediction only]

Probab=97.80  E-value=0.00017  Score=61.70  Aligned_cols=84  Identities=19%  Similarity=0.256  Sum_probs=56.0

Q ss_pred             cceEEEEEeCCC-CCCcch-HHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCC
Q 024325          175 LKRVCLLIDTKW-GVKPRD-HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAG  252 (269)
Q Consensus       175 ~d~vl~vid~~~-~~~~~~-~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~g  252 (269)
                      .|-+++|+.+.. .+...- ..++-.....++..++|+||+||.++.+...  +...   ..+...+++++.+|+++++|
T Consensus        80 ~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~--~~~~---~~y~~~gy~v~~~s~~~~~~  154 (301)
T COG1162          80 NDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAV--KELL---REYEDIGYPVLFVSAKNGDG  154 (301)
T ss_pred             cceEEEEEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcchHHHH--HHHH---HHHHhCCeeEEEecCcCccc
Confidence            455555555443 222221 3455556667888889999999998766553  2222   22223479999999999999


Q ss_pred             HHHHHHHHHHh
Q 024325          253 IRSLRTVLSKI  263 (269)
Q Consensus       253 i~~L~~~i~~~  263 (269)
                      +++|.+.+...
T Consensus       155 ~~~l~~~l~~~  165 (301)
T COG1162         155 LEELAELLAGK  165 (301)
T ss_pred             HHHHHHHhcCC
Confidence            99999988653

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.79  E-value=0.00031  Score=55.77  Aligned_cols=72  Identities=25%  Similarity=0.198  Sum_probs=38.9

Q ss_pred             CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHH-HhhCCcEEEEEecCCC
Q 024325          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLM-ERSQTKYQVVLTKTDT  215 (269)
Q Consensus       137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l-~~~~~p~iiv~NK~Dl  215 (269)
                      +..+.++||||.... ....+    ..+ ..+.. ....+.+++|+|+...  ....+....+ ...+ ..-+|+||+|.
T Consensus        82 ~~d~viiDt~g~~~~-~~~~l----~~l-~~l~~-~~~~~~~~lVv~~~~~--~~~~~~~~~~~~~~~-~~~viltk~D~  151 (173)
T cd03115          82 NFDVVIVDTAGRLQI-DENLM----EEL-KKIKR-VVKPDEVLLVVDAMTG--QDAVNQAKAFNEALG-ITGVILTKLDG  151 (173)
T ss_pred             CCCEEEEECcccchh-hHHHH----HHH-HHHHh-hcCCCeEEEEEECCCC--hHHHHHHHHHHhhCC-CCEEEEECCcC
Confidence            445899999997431 11111    111 11111 1237889999998532  2222333333 2333 35688899998


Q ss_pred             CCc
Q 024325          216 VFP  218 (269)
Q Consensus       216 ~~~  218 (269)
                      ...
T Consensus       152 ~~~  154 (173)
T cd03115         152 DAR  154 (173)
T ss_pred             CCC
Confidence            754

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.78  E-value=0.00025  Score=64.47  Aligned_cols=23  Identities=30%  Similarity=0.439  Sum_probs=19.0

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhc
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTR  114 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~  114 (269)
                      ...++|+|++|+||||++..|..
T Consensus       221 ~~~i~~vGptGvGKTTt~~kLA~  243 (424)
T PRK05703        221 GGVVALVGPTGVGKTTTLAKLAA  243 (424)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            34899999999999998876543

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.76  E-value=0.00031  Score=62.36  Aligned_cols=24  Identities=29%  Similarity=0.436  Sum_probs=20.5

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhc
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTR  114 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~  114 (269)
                      ....++++|++|+||||++..|..
T Consensus       205 ~~~ii~lvGptGvGKTTt~akLA~  228 (407)
T PRK12726        205 NHRIISLIGQTGVGKTTTLVKLGW  228 (407)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999988764

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.75  E-value=0.0012  Score=60.65  Aligned_cols=23  Identities=26%  Similarity=0.406  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      -.++|+|++|+||||++..|.+.
T Consensus       257 ~Vi~LvGpnGvGKTTTiaKLA~~  279 (484)
T PRK06995        257 GVFALMGPTGVGKTTTTAKLAAR  279 (484)
T ss_pred             cEEEEECCCCccHHHHHHHHHHH
Confidence            57999999999999999888754

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.75  E-value=0.00016  Score=65.02  Aligned_cols=22  Identities=23%  Similarity=0.448  Sum_probs=19.3

Q ss_pred             cEEEEEcCCCCChHHHHHHHhc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTR  114 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~  114 (269)
                      ..++++|++|+||||++..|..
T Consensus       224 ~vi~lvGptGvGKTTtaaKLA~  245 (432)
T PRK12724        224 KVVFFVGPTGSGKTTSIAKLAA  245 (432)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999988764

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.73  E-value=0.0006  Score=61.12  Aligned_cols=117  Identities=16%  Similarity=0.157  Sum_probs=61.3

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCc---------CccccCCCC----------------CceeEeeE----------EEe
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQW---------GVVRTSDKP----------------GLTQTINF----------FKL  136 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~---------~~~~~s~~~----------------gtt~~~~~----------~~~  136 (269)
                      ...|+++|++|+||||.+..|....         .+..++..+                |..-....          ...
T Consensus       174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~  253 (388)
T PRK12723        174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK  253 (388)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence            4579999999999999997765421         111111111                00000000          002


Q ss_pred             CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhC--CcEEEEEecCC
Q 024325          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ--TKYQVVLTKTD  214 (269)
Q Consensus       137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~--~p~iiv~NK~D  214 (269)
                      +..++++||||.... ....+    .++ ..++.....-.-+++|+|+..+    ...+.+.+....  .+--+++||.|
T Consensus       254 ~~DlVLIDTaGr~~~-~~~~l----~el-~~~l~~~~~~~e~~LVlsat~~----~~~~~~~~~~~~~~~~~~~I~TKlD  323 (388)
T PRK12723        254 DFDLVLVDTIGKSPK-DFMKL----AEM-KELLNACGRDAEFHLAVSSTTK----TSDVKEIFHQFSPFSYKTVIFTKLD  323 (388)
T ss_pred             CCCEEEEcCCCCCcc-CHHHH----HHH-HHHHHhcCCCCeEEEEEcCCCC----HHHHHHHHHHhcCCCCCEEEEEecc
Confidence            456999999997542 11111    222 2222222212357889998643    223334444432  24568899999


Q ss_pred             CCCc
Q 024325          215 TVFP  218 (269)
Q Consensus       215 l~~~  218 (269)
                      -...
T Consensus       324 et~~  327 (388)
T PRK12723        324 ETTC  327 (388)
T ss_pred             CCCc
Confidence            7654

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.72  E-value=0.0004  Score=53.21  Aligned_cols=116  Identities=11%  Similarity=0.150  Sum_probs=61.7

Q ss_pred             EEEcCCCCChHHHHHHHhcCc-----CccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHh
Q 024325           96 AFAGRSNVGKSSMLNALTRQW-----GVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (269)
Q Consensus        96 ~ivG~~~~GKSsLin~l~~~~-----~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~  170 (269)
                      ..-|..|+||||+--.+....     ....+..      |......++.+.++|||+.....        .....     
T Consensus         4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~------D~~~~~~~yd~VIiD~p~~~~~~--------~~~~l-----   64 (139)
T cd02038           4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDA------DLGLANLDYDYIIIDTGAGISDN--------VLDFF-----   64 (139)
T ss_pred             EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEEC------CCCCCCCCCCEEEEECCCCCCHH--------HHHHH-----
Confidence            456789999999876554321     1111111      11111113679999999753210        01111     


Q ss_pred             cccccceEEEEEeCCCCCCcchHHHHHHHHhh--CCcEEEEEecCCCCCchHHHHHHHHHHHHHHh
Q 024325          171 TRVSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKA  234 (269)
Q Consensus       171 ~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~  234 (269)
                        ..+|.++++++++..--......++.+...  ..++.+|+|+++..  .+..+..+.+.+....
T Consensus        65 --~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~--~~~~~~~~~~~~~~~r  126 (139)
T cd02038          65 --LAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESP--KEGKKVFKRLSNVSNR  126 (139)
T ss_pred             --HhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCH--HHHHHHHHHHHHHHHH
Confidence              228999999987632111223455555432  35788999999743  3333444445554433

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.66  E-value=0.00028  Score=67.87  Aligned_cols=23  Identities=26%  Similarity=0.443  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      -.|+|+|++|+||||++..|.+.
T Consensus       186 ~Vi~lVGpnGvGKTTTiaKLA~~  208 (767)
T PRK14723        186 GVLALVGPTGVGKTTTTAKLAAR  208 (767)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhh
Confidence            47899999999999999888754

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=97.61  E-value=4.8e-05  Score=56.44  Aligned_cols=22  Identities=23%  Similarity=0.250  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      +|+++|..|+|||+|+.++...
T Consensus         2 kvv~~G~~gvGKt~l~~~~~~~   23 (124)
T smart00010        2 KVVGIGDSGVGKVGKSARFVQF   23 (124)
T ss_pred             EEEEECCCChhHHHHHHHHhcC
Confidence            6899999999999999998654

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.50  E-value=0.0018  Score=55.33  Aligned_cols=117  Identities=21%  Similarity=0.341  Sum_probs=61.9

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCc-----CccccCCCCC------------ceeEeeEEE-----------------e
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKPG------------LTQTINFFK-----------------L  136 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~-----~~~~~s~~~g------------tt~~~~~~~-----------------~  136 (269)
                      +...++++|++|+||||++..+....     .+..++..+.            ...++.+..                 .
T Consensus        74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~  153 (270)
T PRK06731         74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA  153 (270)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence            45799999999999999998775431     1111111110            000001000                 1


Q ss_pred             CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhC--CcEEEEEecCC
Q 024325          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ--TKYQVVLTKTD  214 (269)
Q Consensus       137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~--~p~iiv~NK~D  214 (269)
                      +..+.++||||..... ...+    .++. .+.... ..+.+++|+++...    ..+..+.+....  .+--+++||.|
T Consensus       154 ~~D~ViIDt~Gr~~~~-~~~l----~el~-~~~~~~-~~~~~~LVl~a~~~----~~d~~~~~~~f~~~~~~~~I~TKlD  222 (270)
T PRK06731        154 RVDYILIDTAGKNYRA-SETV----EEMI-ETMGQV-EPDYICLTLSASMK----SKDMIEIITNFKDIHIDGIVFTKFD  222 (270)
T ss_pred             CCCEEEEECCCCCcCC-HHHH----HHHH-HHHhhh-CCCeEEEEEcCccC----HHHHHHHHHHhCCCCCCEEEEEeec
Confidence            4579999999975421 1112    2221 122211 25678899987521    123333333322  23457899999


Q ss_pred             CCCc
Q 024325          215 TVFP  218 (269)
Q Consensus       215 l~~~  218 (269)
                      -...
T Consensus       223 et~~  226 (270)
T PRK06731        223 ETAS  226 (270)
T ss_pred             CCCC
Confidence            8754

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.48  E-value=0.0045  Score=55.48  Aligned_cols=72  Identities=19%  Similarity=0.205  Sum_probs=37.9

Q ss_pred             CcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcE-EEEEecCCCC
Q 024325          138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLTKTDTV  216 (269)
Q Consensus       138 ~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~-iiv~NK~Dl~  216 (269)
                      ..+.++||+|-...   +  .+...++. .. ...-+.|-+++|+|+.-+-..  ....+...+ ..++ =+|++|.|-.
T Consensus       183 ~DvvIvDTAGRl~i---d--e~Lm~El~-~I-k~~~~P~E~llVvDam~GQdA--~~~A~aF~e-~l~itGvIlTKlDGd  252 (451)
T COG0541         183 YDVVIVDTAGRLHI---D--EELMDELK-EI-KEVINPDETLLVVDAMIGQDA--VNTAKAFNE-ALGITGVILTKLDGD  252 (451)
T ss_pred             CCEEEEeCCCcccc---c--HHHHHHHH-HH-HhhcCCCeEEEEEecccchHH--HHHHHHHhh-hcCCceEEEEcccCC
Confidence            46999999995331   1  11222221 11 222347899999998744211  122222221 2332 3778999976


Q ss_pred             Cch
Q 024325          217 FPI  219 (269)
Q Consensus       217 ~~~  219 (269)
                      ...
T Consensus       253 aRG  255 (451)
T COG0541         253 ARG  255 (451)
T ss_pred             Ccc
Confidence            543

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.47  E-value=0.0004  Score=53.10  Aligned_cols=21  Identities=43%  Similarity=0.702  Sum_probs=19.7

Q ss_pred             EEEEcCCCCChHHHHHHHhcC
Q 024325           95 IAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        95 v~ivG~~~~GKSsLin~l~~~  115 (269)
                      |+++|++|+|||||++.|...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999986

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.43  E-value=0.0012  Score=49.51  Aligned_cols=21  Identities=29%  Similarity=0.509  Sum_probs=19.6

Q ss_pred             EEEEcCCCCChHHHHHHHhcC
Q 024325           95 IAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        95 v~ivG~~~~GKSsLin~l~~~  115 (269)
                      |++.|+||+|||++++.+...
T Consensus         1 ill~G~~G~GKT~l~~~la~~   21 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQY   21 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhh
Confidence            689999999999999999986

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=97.43  E-value=0.00025  Score=58.20  Aligned_cols=75  Identities=19%  Similarity=0.187  Sum_probs=39.0

Q ss_pred             CcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHH-------HHHhhCCcEEEEE
Q 024325          138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS-------LMERSQTKYQVVL  210 (269)
Q Consensus       138 ~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~-------~l~~~~~p~iiv~  210 (269)
                      ..+.++|.||.-+-+..+..   ...+. .++....---+++.++|+..-  .....++.       -+-....|-+=|+
T Consensus        97 ~~Y~lFDcPGQVELft~h~~---l~~I~-~~Lek~~~rl~~V~LiDs~yc--s~p~~~iS~lL~sl~tMl~melphVNvl  170 (290)
T KOG1533|consen   97 DHYVLFDCPGQVELFTHHDS---LNKIF-RKLEKLDYRLVAVNLIDSHYC--SDPSKFISSLLVSLATMLHMELPHVNVL  170 (290)
T ss_pred             CcEEEEeCCCcEEEEeccch---HHHHH-HHHHHcCceEEEEEeeeceee--CChHHHHHHHHHHHHHHHhhcccchhhh
Confidence            34899999998654332221   11111 112222112235667776432  12222222       2233578889999


Q ss_pred             ecCCCCCc
Q 024325          211 TKTDTVFP  218 (269)
Q Consensus       211 NK~Dl~~~  218 (269)
                      .|+|+...
T Consensus       171 SK~Dl~~~  178 (290)
T KOG1533|consen  171 SKADLLKK  178 (290)
T ss_pred             hHhHHHHh
Confidence            99999864

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=97.31  E-value=0.0024  Score=56.36  Aligned_cols=85  Identities=19%  Similarity=0.196  Sum_probs=62.4

Q ss_pred             ccccceEEEEEeCCCCCCcchHHHHHHHHhh--CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCC--eEEeeC
Q 024325          172 RVSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP--VMMVSS  247 (269)
Q Consensus       172 ~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~--vi~vSa  247 (269)
                      ...+|+++.|+|+.++.......+-..+...  .+.+|+|+|||||++..........+...        +|  .|-.|-
T Consensus       211 iDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~Wv~~lSke--------yPTiAfHAsi  282 (572)
T KOG2423|consen  211 IDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKE--------YPTIAFHASI  282 (572)
T ss_pred             hcccceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccccHHHHHHHHHHHhhh--------Ccceeeehhh
Confidence            3448999999999998888887777777654  35699999999999887666655554432        33  344565


Q ss_pred             CCCCCHHHHHHHHHHhh
Q 024325          248 KSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       248 ~~g~gi~~L~~~i~~~~  264 (269)
                      .+..|=..|+..+....
T Consensus       283 ~nsfGKgalI~llRQf~  299 (572)
T KOG2423|consen  283 NNSFGKGALIQLLRQFA  299 (572)
T ss_pred             cCccchhHHHHHHHHHH
Confidence            66678888888777654

>PRK13695 putative NTPase; Provisional

Probab=97.30  E-value=0.0012  Score=52.49  Aligned_cols=22  Identities=23%  Similarity=0.507  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      +|+++|.+|+|||||+..+.+.
T Consensus         2 ~i~ltG~~G~GKTTll~~i~~~   23 (174)
T PRK13695          2 KIGITGPPGVGKTTLVLKIAEL   23 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999987653

>TIGR03263 guanyl_kin guanylate kinase

Probab=97.26  E-value=0.001  Score=53.06  Aligned_cols=23  Identities=39%  Similarity=0.523  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCc
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      .|+++|++|||||||++.|.+..
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~~   25 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEED   25 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHccC
Confidence            58999999999999999999863

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.26  E-value=0.0002  Score=59.45  Aligned_cols=23  Identities=30%  Similarity=0.372  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCc
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      .|+++|++|||||||+|.+.|-.
T Consensus        31 fvsilGpSGcGKSTLLriiAGL~   53 (248)
T COG1116          31 FVAILGPSGCGKSTLLRLIAGLE   53 (248)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            69999999999999999999863

>COG1161 Predicted GTPases [General function prediction only]

Probab=97.23  E-value=0.0019  Score=56.70  Aligned_cols=81  Identities=20%  Similarity=0.186  Sum_probs=59.6

Q ss_pred             hcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCC
Q 024325          170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS  249 (269)
Q Consensus       170 ~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~  249 (269)
                      .....+|+|+.|+|+..+..+....+-+.+.  ..|.++|+||+|+.+.....+..+.+....      ....+.+|++.
T Consensus        30 ~~~~~~d~vvevvDar~P~~s~~~~l~~~v~--~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~------~~~~~~v~~~~  101 (322)
T COG1161          30 EVLKSVDVVVEVVDARDPLGTRNPELERIVK--EKPKLLVLNKADLAPKEVTKKWKKYFKKEE------GIKPIFVSAKS  101 (322)
T ss_pred             HhcccCCEEEEEEeccccccccCccHHHHHc--cCCcEEEEehhhcCCHHHHHHHHHHHHhcC------CCccEEEEeec
Confidence            3344599999999999887777766655555  355699999999999877655555443321      45678999999


Q ss_pred             CCCHHHHHH
Q 024325          250 GAGIRSLRT  258 (269)
Q Consensus       250 g~gi~~L~~  258 (269)
                      +.+...+..
T Consensus       102 ~~~~~~i~~  110 (322)
T COG1161         102 RQGGKKIRK  110 (322)
T ss_pred             ccCccchHH
Confidence            888888874

>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.23  E-value=0.0044  Score=55.98  Aligned_cols=96  Identities=19%  Similarity=0.168  Sum_probs=52.0

Q ss_pred             CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcch--HHHHHHHHhhCCcE---EEEEe
Q 024325          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERSQTKY---QVVLT  211 (269)
Q Consensus       137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~--~~~~~~l~~~~~p~---iiv~N  211 (269)
                      +..++++||+|-.....     .+...+..  +......|.|++|-.+--+-...+  ..+-+.+..+..|-   -++++
T Consensus       466 gfDVvLiDTAGR~~~~~-----~lm~~l~k--~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~~~~r~id~~~lt  538 (587)
T KOG0781|consen  466 GFDVVLIDTAGRMHNNA-----PLMTSLAK--LIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADHSTPRLIDGILLT  538 (587)
T ss_pred             CCCEEEEeccccccCCh-----hHHHHHHH--HHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcCCCccccceEEEE
Confidence            55699999999754321     11122211  222344899999987754433222  23444455555453   47899


Q ss_pred             cCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeC
Q 024325          212 KTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS  247 (269)
Q Consensus       212 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa  247 (269)
                      |+|-++..--    ..+ ....   ....|++++-+
T Consensus       539 k~dtv~d~vg----~~~-~m~y---~~~~pi~fvg~  566 (587)
T KOG0781|consen  539 KFDTVDDKVG----AAV-SMVY---ITGKPILFVGV  566 (587)
T ss_pred             eccchhhHHH----HHh-hhee---ecCCceEEEec
Confidence            9998764211    111 1111   23678888844

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.17  E-value=0.0011  Score=54.66  Aligned_cols=118  Identities=17%  Similarity=0.145  Sum_probs=63.8

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCc---CccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQW---GVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~---~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      .|+|.++|..-+||||+-...+.+-   +..+.....-.|++... ..-..+.+||.||....+.+.--   +.    ..
T Consensus        27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is-~sfinf~v~dfPGQ~~~Fd~s~D---~e----~i   98 (347)
T KOG3887|consen   27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHIS-NSFINFQVWDFPGQMDFFDPSFD---YE----MI   98 (347)
T ss_pred             CceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhh-hhhcceEEeecCCccccCCCccC---HH----HH
Confidence            3789999999999999988776641   00111111112222211 01245789999998654321100   01    11


Q ss_pred             HhcccccceEEEEEeCCCCCCcchHHHHHHHHh-----hCCcEEEEEecCCCCCchH
Q 024325          169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMER-----SQTKYQVVLTKTDTVFPID  220 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~-----~~~p~iiv~NK~Dl~~~~~  220 (269)
                      +   ..+.++++|+|+.......-..+...+..     .++.+=+.+.|+|-++.+-
T Consensus        99 F---~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~  152 (347)
T KOG3887|consen   99 F---RGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDF  152 (347)
T ss_pred             H---hccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhh
Confidence            1   12888999999853211111111111111     2456778899999987644

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=97.16  E-value=0.00032  Score=55.62  Aligned_cols=23  Identities=35%  Similarity=0.482  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      -.|+|+|++|+|||||+|.+.|-
T Consensus        26 e~vAi~GpSGaGKSTLLnLIAGF   48 (231)
T COG3840          26 EIVAILGPSGAGKSTLLNLIAGF   48 (231)
T ss_pred             cEEEEECCCCccHHHHHHHHHhc
Confidence            37999999999999999999986

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=97.14  E-value=0.0079  Score=50.76  Aligned_cols=21  Identities=33%  Similarity=0.588  Sum_probs=19.1

Q ss_pred             EEEEcCCCCChHHHHHHHhcC
Q 024325           95 IAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        95 v~ivG~~~~GKSsLin~l~~~  115 (269)
                      |+++|.|||||||+.+.|...
T Consensus         2 Ivl~G~pGSGKST~a~~La~~   22 (249)
T TIGR03574         2 IILTGLPGVGKSTFSKELAKK   22 (249)
T ss_pred             EEEEcCCCCCHHHHHHHHHHH
Confidence            789999999999999998764

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.14  E-value=0.00049  Score=44.76  Aligned_cols=20  Identities=30%  Similarity=0.527  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCChHHHHHHHh
Q 024325           94 EIAFAGRSNVGKSSMLNALT  113 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~  113 (269)
                      ..+|.|++|+|||||+.++.
T Consensus        25 ~tli~G~nGsGKSTllDAi~   44 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQ   44 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            68999999999999998865

>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]

Probab=97.14  E-value=0.00021  Score=68.06  Aligned_cols=26  Identities=38%  Similarity=0.542  Sum_probs=23.9

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcC
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ...|.|+++|..++||||.++.+.|.
T Consensus        27 i~lP~I~vvG~QSsGKSSvLE~lvG~   52 (657)
T KOG0446|consen   27 IPLPQIVVVGGQSSGKSSVLESLVGF   52 (657)
T ss_pred             ccCCceEEecCCCCcchhHHHHhhcc
Confidence            45789999999999999999999996

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.10  E-value=0.00037  Score=57.55  Aligned_cols=23  Identities=39%  Similarity=0.407  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCc
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      .|+|+|++|||||||+|.+.+-.
T Consensus        33 ~vaI~GpSGSGKSTLLniig~ld   55 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGGLD   55 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            69999999999999999998763

>PRK14737 gmk guanylate kinase; Provisional

Probab=97.08  E-value=0.00068  Score=54.67  Aligned_cols=38  Identities=16%  Similarity=0.066  Sum_probs=28.0

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeE
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT  130 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~  130 (269)
                      ...|+++|++|||||||+++|+... .......+-||+.
T Consensus         4 ~~~ivl~GpsG~GK~tl~~~l~~~~-~~~~~~v~~TTR~   41 (186)
T PRK14737          4 PKLFIISSVAGGGKSTIIQALLEEH-PDFLFSISCTTRA   41 (186)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhcC-CccccccCccCCC
Confidence            4569999999999999999998873 2233334556654

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.07  E-value=0.0019  Score=41.02  Aligned_cols=40  Identities=20%  Similarity=0.188  Sum_probs=24.2

Q ss_pred             cceEEEEEeCCCCCCcc---hHHHHHHHHhh--CCcEEEEEecCC
Q 024325          175 LKRVCLLIDTKWGVKPR---DHELISLMERS--QTKYQVVLTKTD  214 (269)
Q Consensus       175 ~d~vl~vid~~~~~~~~---~~~~~~~l~~~--~~p~iiv~NK~D  214 (269)
                      .++|+|++|.+......   ...+++.++..  ++|+++|+||+|
T Consensus        14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D   58 (58)
T PF06858_consen   14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID   58 (58)
T ss_dssp             -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred             cceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence            67899999998643332   24566666653  799999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.06  E-value=0.00049  Score=52.28  Aligned_cols=24  Identities=33%  Similarity=0.476  Sum_probs=22.0

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      -.++|+|+.|+|||||++.|++..
T Consensus        12 ~~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   12 EIVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             SEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CEEEEEccCCCccccceeeecccc
Confidence            379999999999999999999984

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.04  E-value=0.00051  Score=50.96  Aligned_cols=22  Identities=27%  Similarity=0.475  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      +|+|.|+|||||||+.+.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999886

...

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=97.00  E-value=0.0035  Score=53.60  Aligned_cols=147  Identities=14%  Similarity=0.178  Sum_probs=67.7

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEc-------CCCCCCcchhHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVD-------LPGYGFAYAKEEVKDAWEELV  165 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvD-------tpG~~~~~~~~~~~~~~~~~~  165 (269)
                      |-|++.|.|+|||||+.+.|....  ..               .+..+.+++       --.+.++......+   ..+.
T Consensus         2 pLiil~G~P~SGKTt~a~~L~~~~--~~---------------~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R---~~l~   61 (270)
T PF08433_consen    2 PLIILCGLPCSGKTTRAKELKKYL--EE---------------KGKEVVIISDDSLGIDRNDYADSKKEKEAR---GSLK   61 (270)
T ss_dssp             -EEEEE--TTSSHHHHHHHHHHHH--HH---------------TT--EEEE-THHHH-TTSSS--GGGHHHHH---HHHH
T ss_pred             EEEEEEcCCCCcHHHHHHHHHHHH--Hh---------------cCCEEEEEcccccccchhhhhchhhhHHHH---HHHH
Confidence            579999999999999999988752  11               011222222       11122221222222   2222


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchH-----------HHHHHHHHHHHHHh
Q 024325          166 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID-----------VARRAMQIEESLKA  234 (269)
Q Consensus       166 ~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~-----------~~~~~~~~~~~~~~  234 (269)
                      ..+.+.+. -+ -++++|...-+...--++....+..+.+..+|.-.+++-....           -.+....+...+..
T Consensus        62 s~v~r~ls-~~-~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~~~~~~e~i~~m~~RfE~  139 (270)
T PF08433_consen   62 SAVERALS-KD-TIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPEPERYPEETIDDMIQRFEE  139 (270)
T ss_dssp             HHHHHHHT-T--SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S--S-HHHHHHHHHH---
T ss_pred             HHHHHhhc-cC-eEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCCCCCCCHHHHHHHHHHhcC
Confidence            22222222 22 4557888766666667788888888899888887776531100           11222233333322


Q ss_pred             cC---CCCCCeEEee-CCCCCCHHHHHHHHH
Q 024325          235 NN---SLVQPVMMVS-SKSGAGIRSLRTVLS  261 (269)
Q Consensus       235 ~~---~~~~~vi~vS-a~~g~gi~~L~~~i~  261 (269)
                      -.   .+..|.|.+. .-....++++.+.|.
T Consensus       140 P~~~nrWD~plf~i~~~~~~~~~~~I~~~l~  170 (270)
T PF08433_consen  140 PDPKNRWDSPLFTIDSSDEELPLEEIWNALF  170 (270)
T ss_dssp             TTSS-GGGS-SEEEE-TTS---HHHHHHHHH
T ss_pred             CCCCCCccCCeEEEecCCCCCCHHHHHHHHH
Confidence            11   2345777776 566667788888774

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>smart00275 G_alpha G protein alpha subunit

Probab=96.99  E-value=0.0083  Score=53.13  Aligned_cols=117  Identities=13%  Similarity=0.050  Sum_probs=71.0

Q ss_pred             eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC--cc------h---HHHHHHHHh---
Q 024325          136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK--PR------D---HELISLMER---  201 (269)
Q Consensus       136 ~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~--~~------~---~~~~~~l~~---  201 (269)
                      .+..+.+||..|...      .+..|..+       ..++++++||+|.+.-..  ..      -   ..+++.+-.   
T Consensus       182 ~~~~~~~~DvgGqr~------~R~kW~~~-------f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~  248 (342)
T smart00275      182 KKLFFRMFDVGGQRS------ERKKWIHC-------FDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRW  248 (342)
T ss_pred             CCeEEEEEecCCchh------hhhhHHHH-------hCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCcc
Confidence            366789999999632      23445443       234999999999884211  00      0   122222222   


Q ss_pred             -hCCcEEEEEecCCCCCc-----------------hHHHHHHHHHHHHHHhcCC----CCCCeEEeeCCCCCCHHHHHHH
Q 024325          202 -SQTKYQVVLTKTDTVFP-----------------IDVARRAMQIEESLKANNS----LVQPVMMVSSKSGAGIRSLRTV  259 (269)
Q Consensus       202 -~~~p~iiv~NK~Dl~~~-----------------~~~~~~~~~~~~~~~~~~~----~~~~vi~vSa~~g~gi~~L~~~  259 (269)
                       .+.|+++++||.|+...                 .+.......+.+.+.....    ...-+..++|..-.++..+++.
T Consensus       249 ~~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~  328 (342)
T smart00275      249 FANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDA  328 (342)
T ss_pred             ccCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHH
Confidence             35799999999998631                 2234445555555544322    1223467888888999999988


Q ss_pred             HHHhhh
Q 024325          260 LSKIAR  265 (269)
Q Consensus       260 i~~~~~  265 (269)
                      +.+.+-
T Consensus       329 v~~~I~  334 (342)
T smart00275      329 VKDIIL  334 (342)
T ss_pred             HHHHHH
Confidence            877654

Subunit of G proteins that contains the guanine nucleotide binding site

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=96.98  E-value=0.0043  Score=56.50  Aligned_cols=70  Identities=16%  Similarity=0.174  Sum_probs=51.6

Q ss_pred             cccceEEEEEeCCCCCCcchHHHHHHHHhh--CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCC
Q 024325          173 VSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS  249 (269)
Q Consensus       173 ~~~d~vl~vid~~~~~~~~~~~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~  249 (269)
                      +-+|+|+.+||+.+++-....++-+.....  .+..++++||+||+++.......+++.+.       +.++++-||..
T Consensus       173 ErSDivvqIVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~-------ni~~vf~SA~~  244 (562)
T KOG1424|consen  173 ERSDIVVQIVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFRQN-------NIPVVFFSALA  244 (562)
T ss_pred             hhcceEEEEeecCCccccCChhHHHHHhccccccceEEEEehhhcCCHHHHHHHHHHHHhc-------CceEEEEeccc
Confidence            338999999999987666655555555543  35678899999999987766665554332       48899999976

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=96.97  E-value=0.006  Score=52.92  Aligned_cols=152  Identities=21%  Similarity=0.304  Sum_probs=75.9

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCc-----Cccc-------------------------cCCCCCceeEeeEE------
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQW-----GVVR-------------------------TSDKPGLTQTINFF------  134 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~-----~~~~-------------------------~s~~~gtt~~~~~~------  134 (269)
                      ....|+++|-.|+||||-|-.|....     .+..                         ++..+|..-....+      
T Consensus       138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~A  217 (340)
T COG0552         138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAA  217 (340)
T ss_pred             CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHH
Confidence            35689999999999999987766321     1110                         11111110000000      


Q ss_pred             -EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhccc-ccceEEEEEeCCCCCCcchHHHHHHHHhhCCc-EEEEEe
Q 024325          135 -KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV-SLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLT  211 (269)
Q Consensus       135 -~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p-~iiv~N  211 (269)
                       ..+..+.++||+|-..+..  ..-+.+..+.+-.-.... ..+-+++++|+.-|-..  ..-.+..... .+ .-+++|
T Consensus       218 kar~~DvvliDTAGRLhnk~--nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqna--l~QAk~F~ea-v~l~GiIlT  292 (340)
T COG0552         218 KARGIDVVLIDTAGRLHNKK--NLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNA--LSQAKIFNEA-VGLDGIILT  292 (340)
T ss_pred             HHcCCCEEEEeCcccccCch--hHHHHHHHHHHHhccccCCCCceEEEEEEcccChhH--HHHHHHHHHh-cCCceEEEE
Confidence             0256799999999765422  111222222222111111 13458888898744221  1112222221 22 247899


Q ss_pred             cCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHH
Q 024325          212 KTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRT  258 (269)
Q Consensus       212 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~  258 (269)
                      |+|-.......   -.+...      ...|+.++-  -|+++++|..
T Consensus       293 KlDgtAKGG~i---l~I~~~------l~~PI~fiG--vGE~~~DL~~  328 (340)
T COG0552         293 KLDGTAKGGII---LSIAYE------LGIPIKFIG--VGEGYDDLRP  328 (340)
T ss_pred             ecccCCCccee---eeHHHH------hCCCEEEEe--CCCChhhccc
Confidence            99955432211   111111      257888884  4778888763

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=96.96  E-value=0.00064  Score=52.22  Aligned_cols=23  Identities=26%  Similarity=0.596  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      |.|+++|+.|+|||||+..|++.
T Consensus         1 pvv~VvG~~~sGKTTl~~~Li~~   23 (140)
T PF03205_consen    1 PVVQVVGPKNSGKTTLIRKLINE   23 (140)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999998875

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=96.95  E-value=0.0008  Score=53.42  Aligned_cols=25  Identities=32%  Similarity=0.494  Sum_probs=22.4

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcC
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..+.++|+|++|||||||+++|...
T Consensus         5 ~~~ii~ivG~sgsGKTTLi~~li~~   29 (173)
T PRK10751          5 MIPLLAIAAWSGTGKTTLLKKLIPA   29 (173)
T ss_pred             CceEEEEECCCCChHHHHHHHHHHH
Confidence            4578999999999999999999875

>PRK14738 gmk guanylate kinase; Provisional

Probab=96.91  E-value=0.0011  Score=54.33  Aligned_cols=23  Identities=26%  Similarity=0.472  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..|+|+|++|||||||++.|...
T Consensus        14 ~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         14 LLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             eEEEEECcCCCCHHHHHHHHHhc
Confidence            46888999999999999999865

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=96.90  E-value=0.0069  Score=42.40  Aligned_cols=69  Identities=17%  Similarity=0.239  Sum_probs=41.7

Q ss_pred             EEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccc
Q 024325           95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVS  174 (269)
Q Consensus        95 v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (269)
                      +++.|..|+||||+...+....  .. ...     .+...  + .+.++|+||......         .+   .......
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l--~~-~g~-----~v~~~--~-d~iivD~~~~~~~~~---------~~---~~~~~~~   58 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAAL--AK-RGK-----RVLLI--D-DYVLIDTPPGLGLLV---------LL---CLLALLA   58 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHH--HH-CCC-----eEEEE--C-CEEEEeCCCCccchh---------hh---hhhhhhh
Confidence            6788999999999998887652  11 111     11111  1 689999998643210         00   0111223


Q ss_pred             cceEEEEEeCCC
Q 024325          175 LKRVCLLIDTKW  186 (269)
Q Consensus       175 ~d~vl~vid~~~  186 (269)
                      +|.++++++...
T Consensus        59 ~~~vi~v~~~~~   70 (99)
T cd01983          59 ADLVIIVTTPEA   70 (99)
T ss_pred             CCEEEEecCCch
Confidence            888999988764

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma

Probab=96.90  E-value=0.0023  Score=54.42  Aligned_cols=60  Identities=22%  Similarity=0.217  Sum_probs=41.8

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCC-CCCceeEeeEEEe------CCcEEEEcCCCCCC
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-KPGLTQTINFFKL------GTKLCLVDLPGYGF  150 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~-~~gtt~~~~~~~~------~~~~~lvDtpG~~~  150 (269)
                      +.-.|+|+|+..+|||.|+|.|++......+++ ...+|..+-.+..      +..+.++||.|+++
T Consensus        20 ~v~vvsi~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~~~~~~~~v~llDteG~~~   86 (260)
T PF02263_consen   20 PVAVVSIVGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPLPDGEKVAVVLLDTEGLGD   86 (260)
T ss_dssp             BEEEEEEEEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-TTSTCEEEEEEEEECBTT
T ss_pred             CEEEEEeecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeecccccccceeEEEecchhccc
Confidence            456899999999999999999998633233333 2345655543321      34599999999976

GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=96.88  E-value=0.019  Score=45.42  Aligned_cols=64  Identities=13%  Similarity=0.076  Sum_probs=39.2

Q ss_pred             cEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCc-EEEEEecCCCCC
Q 024325          139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVF  217 (269)
Q Consensus       139 ~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p-~iiv~NK~Dl~~  217 (269)
                      .+.++|||+....   .         ....   +..+|.+++++++.......-..+++.+...+.+ ..+|+|++|...
T Consensus        64 d~viiD~p~~~~~---~---------~~~~---l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~  128 (179)
T cd02036          64 DYILIDSPAGIER---G---------FITA---IAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDM  128 (179)
T ss_pred             CEEEEECCCCCcH---H---------HHHH---HHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCcccc
Confidence            6999999975321   0         0111   1238999999987643222233556666655544 678999998654

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=96.87  E-value=0.0081  Score=45.21  Aligned_cols=24  Identities=17%  Similarity=0.396  Sum_probs=21.7

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ...+.+.|++|+|||+|++.+.+.
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~~~   42 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIANE   42 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999999987

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=96.84  E-value=0.011  Score=42.96  Aligned_cols=97  Identities=16%  Similarity=0.234  Sum_probs=50.6

Q ss_pred             EcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccce
Q 024325           98 AGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKR  177 (269)
Q Consensus        98 vG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  177 (269)
                      -+..|+||||+.-.|....  +......-.--|.... .+..+.++|||+.....        ......       .+|.
T Consensus         6 ~~kgg~gkt~~~~~la~~~--~~~~~~~~~l~d~d~~-~~~D~IIiDtpp~~~~~--------~~~~l~-------~aD~   67 (106)
T cd03111           6 GAKGGVGATTLAANLAVAL--AKEAGRRVLLVDLDLQ-FGDDYVVVDLGRSLDEV--------SLAALD-------QADR   67 (106)
T ss_pred             CCCCCCcHHHHHHHHHHHH--HhcCCCcEEEEECCCC-CCCCEEEEeCCCCcCHH--------HHHHHH-------HcCe
Confidence            4568999999876655431  1110110011111111 12268999999863310        011111       2899


Q ss_pred             EEEEEeCCCCCCcchHHHHHHHHhhC----CcEEEEEec
Q 024325          178 VCLLIDTKWGVKPRDHELISLMERSQ----TKYQVVLTK  212 (269)
Q Consensus       178 vl~vid~~~~~~~~~~~~~~~l~~~~----~p~iiv~NK  212 (269)
                      ++++++++..-...-..+++.+...+    .++.+|+|+
T Consensus        68 vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          68 VFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             EEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence            99999876432222345555555543    356788875

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>KOG4181 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.84  E-value=0.015  Score=50.68  Aligned_cols=25  Identities=32%  Similarity=0.510  Sum_probs=22.4

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcC
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..-+|+++|.-|+|||||++.|.++
T Consensus       187 df~VIgvlG~QgsGKStllslLaan  211 (491)
T KOG4181|consen  187 DFTVIGVLGGQGSGKSTLLSLLAAN  211 (491)
T ss_pred             CeeEEEeecCCCccHHHHHHHHhcc
Confidence            4568999999999999999999876

>PRK04195 replication factor C large subunit; Provisional

Probab=96.81  E-value=0.044  Score=50.92  Aligned_cols=24  Identities=29%  Similarity=0.461  Sum_probs=21.9

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .+.+.+.|+||+||||+++++.+.
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~e   62 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALAND   62 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999999886

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=96.77  E-value=0.014  Score=50.24  Aligned_cols=27  Identities=26%  Similarity=0.523  Sum_probs=24.2

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcCc
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      ...|+++++|.+|.|||++++.+...+
T Consensus        59 ~Rmp~lLivG~snnGKT~Ii~rF~~~h   85 (302)
T PF05621_consen   59 HRMPNLLIVGDSNNGKTMIIERFRRLH   85 (302)
T ss_pred             cCCCceEEecCCCCcHHHHHHHHHHHC
Confidence            456899999999999999999999874

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=96.75  E-value=0.0013  Score=43.91  Aligned_cols=21  Identities=43%  Similarity=0.591  Sum_probs=19.5

Q ss_pred             EEEEcCCCCChHHHHHHHhcC
Q 024325           95 IAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        95 v~ivG~~~~GKSsLin~l~~~  115 (269)
                      |++.|.+|+||||+.+.|...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999876

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=96.74  E-value=0.0012  Score=53.20  Aligned_cols=23  Identities=35%  Similarity=0.537  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      -.++++|++|||||||+++|++.
T Consensus        26 ~~i~I~G~tGSGKTTll~aL~~~   48 (186)
T cd01130          26 KNILISGGTGSGKTTLLNALLAF   48 (186)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            37999999999999999999986

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.71  E-value=0.0014  Score=53.42  Aligned_cols=23  Identities=30%  Similarity=0.455  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      -.|+++|++|||||||+.+|-+-
T Consensus        29 evv~iiGpSGSGKSTlLRclN~L   51 (240)
T COG1126          29 EVVVIIGPSGSGKSTLLRCLNGL   51 (240)
T ss_pred             CEEEEECCCCCCHHHHHHHHHCC
Confidence            47999999999999999998875

>TIGR00235 udk uridine kinase

Probab=96.70  E-value=0.0013  Score=53.86  Aligned_cols=25  Identities=24%  Similarity=0.283  Sum_probs=22.1

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcC
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ....|+|+|++|||||||+++|.+.
T Consensus         5 ~g~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         5 KGIIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHH
Confidence            3457999999999999999999875

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.70  E-value=0.0014  Score=53.85  Aligned_cols=23  Identities=26%  Similarity=0.377  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      -.++++|+.|+|||||++.|.|.
T Consensus        28 ~~~~l~G~nGsGKSTLl~~l~G~   50 (211)
T cd03225          28 EFVLIVGPNGSGKSTLLRLLNGL   50 (211)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            47999999999999999999987

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=96.70  E-value=0.0016  Score=52.14  Aligned_cols=24  Identities=25%  Similarity=0.362  Sum_probs=22.0

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .-.++++|+.|+|||||++.|.|.
T Consensus        25 Ge~~~l~G~nGsGKSTLl~~l~Gl   48 (177)
T cd03222          25 GEVIGIVGPNGTGKTTAVKILAGQ   48 (177)
T ss_pred             CCEEEEECCCCChHHHHHHHHHcC
Confidence            347999999999999999999987

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=96.70  E-value=0.0015  Score=52.32  Aligned_cols=24  Identities=17%  Similarity=0.249  Sum_probs=21.6

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .+.|+++|.|||||||+.+.|...
T Consensus         3 ~~ii~i~G~~GsGKsTl~~~l~~~   26 (188)
T TIGR01360         3 CKIIFIVGGPGSGKGTQCEKIVEK   26 (188)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            568999999999999999999854

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins

Probab=96.69  E-value=0.035  Score=46.03  Aligned_cols=99  Identities=18%  Similarity=0.197  Sum_probs=50.9

Q ss_pred             CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHh------hCCcEEEEE
Q 024325          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER------SQTKYQVVL  210 (269)
Q Consensus       137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~------~~~p~iiv~  210 (269)
                      +..++|+||+|....            +....+..   +|+|++-.-.+...-....+.++++.+      ..+|.-+++
T Consensus        83 ~~d~VlvDleG~as~------------~~~~aia~---sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~  147 (231)
T PF07015_consen   83 GFDFVLVDLEGGASE------------LNDYAIAR---SDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLF  147 (231)
T ss_pred             CCCEEEEeCCCCCch------------hHHHHHHH---CCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEE
Confidence            356899999997542            11122222   787776443321100111222333322      357999999


Q ss_pred             ecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHH
Q 024325          211 TKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRT  258 (269)
Q Consensus       211 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~  258 (269)
                      |++.-..   .......+.+.+.     ..|++.++-.....+.+++.
T Consensus       148 Tr~~~~~---~~~~~~~~~e~~~-----~lpvl~t~l~eR~Af~~m~~  187 (231)
T PF07015_consen  148 TRVPAAR---LTRAQRIISEQLE-----SLPVLDTELHERDAFRAMFS  187 (231)
T ss_pred             ecCCcch---hhHHHHHHHHHHh-----cCCccccccccHHHHHHHHH
Confidence            9987432   2222223333333     36777777766665555554

In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=96.69  E-value=0.0014  Score=54.78  Aligned_cols=24  Identities=29%  Similarity=0.396  Sum_probs=21.9

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      -.++++|+.|||||||++.|.|..
T Consensus        27 e~~~l~G~nGsGKSTLl~~l~G~~   50 (235)
T cd03261          27 EILAIIGPSGSGKSTLLRLIVGLL   50 (235)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            479999999999999999999873

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=96.67  E-value=0.0015  Score=52.72  Aligned_cols=24  Identities=29%  Similarity=0.400  Sum_probs=21.8

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      -.++++|+.|+|||||++.|.|..
T Consensus        19 e~~~i~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        19 EVLALLGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            379999999999999999999863

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=96.67  E-value=0.0013  Score=57.63  Aligned_cols=23  Identities=26%  Similarity=0.361  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCc
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      -++++|++|||||||++.+.|-.
T Consensus        31 f~vllGPSGcGKSTlLr~IAGLe   53 (338)
T COG3839          31 FVVLLGPSGCGKSTLLRMIAGLE   53 (338)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999999863

>PRK07261 topology modulation protein; Provisional

Probab=96.67  E-value=0.0015  Score=51.95  Aligned_cols=22  Identities=36%  Similarity=0.567  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      +|+|+|.+|+|||||...|...
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            6999999999999999998765

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=96.66  E-value=0.0018  Score=53.38  Aligned_cols=25  Identities=24%  Similarity=0.254  Sum_probs=22.4

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCc
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      .-.++++|+.|+|||||++.|.|..
T Consensus        29 Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        29 GEMVFLVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3479999999999999999999873

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=96.65  E-value=0.0016  Score=53.49  Aligned_cols=22  Identities=18%  Similarity=0.401  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .++++|++|+|||||++.|.|.
T Consensus        27 ~~~i~G~nGsGKSTLl~~l~Gl   48 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILATL   48 (211)
T ss_pred             cEEEECCCCCCHHHHHHHHhCC
Confidence            7999999999999999999986

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=96.65  E-value=0.0015  Score=53.82  Aligned_cols=25  Identities=36%  Similarity=0.315  Sum_probs=22.3

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCc
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      .-.++++|+.|+|||||++.|.|..
T Consensus        30 G~~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          30 GEFVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCc
Confidence            3479999999999999999999873

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=96.64  E-value=0.0016  Score=53.87  Aligned_cols=23  Identities=22%  Similarity=0.378  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      -.++++|+.|+|||||++.|.|.
T Consensus        27 e~~~i~G~nGsGKSTLl~~i~G~   49 (220)
T cd03265          27 EIFGLLGPNGAGKTTTIKMLTTL   49 (220)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47999999999999999999986

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.63  E-value=0.0016  Score=53.19  Aligned_cols=24  Identities=25%  Similarity=0.397  Sum_probs=21.9

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .-.++++|+.|||||||++.|+|.
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~l~Gl   49 (205)
T cd03226          26 GEIIALTGKNGAGKTTLAKILAGL   49 (205)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            347999999999999999999986

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=96.63  E-value=0.0017  Score=50.05  Aligned_cols=24  Identities=29%  Similarity=0.588  Sum_probs=21.9

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      -.++++|++|+|||||++.|.|..
T Consensus        27 e~~~i~G~nGsGKStLl~~l~G~~   50 (144)
T cd03221          27 DRIGLVGRNGAGKSTLLKLIAGEL   50 (144)
T ss_pred             CEEEEECCCCCCHHHHHHHHcCCC
Confidence            378999999999999999999973

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=96.62  E-value=0.0017  Score=47.31  Aligned_cols=20  Identities=25%  Similarity=0.471  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChHHHHHHHh
Q 024325           94 EIAFAGRSNVGKSSMLNALT  113 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~  113 (269)
                      .++++|++|+|||||++.+.
T Consensus        17 ~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          17 GVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEcCCCCCHHHHHHHhh
Confidence            68999999999999999987

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=96.62  E-value=0.0018  Score=49.44  Aligned_cols=22  Identities=27%  Similarity=0.493  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .|+++|+|||||||++..|...
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~   22 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKR   22 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            3789999999999999999865

...

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=96.62  E-value=0.0021  Score=51.40  Aligned_cols=23  Identities=26%  Similarity=0.247  Sum_probs=20.5

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhc
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTR  114 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~  114 (269)
                      .-.++++|+.|+|||||++.+++
T Consensus        21 G~~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238          21 NVLVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhh
Confidence            34799999999999999999874

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=96.62  E-value=0.0017  Score=53.40  Aligned_cols=23  Identities=26%  Similarity=0.395  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      -.++++|+.|+|||||++.|.|.
T Consensus        29 ~~~~l~G~nGsGKSTLl~~i~Gl   51 (214)
T TIGR02673        29 EFLFLTGPSGAGKTTLLKLLYGA   51 (214)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47999999999999999999987

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=96.60  E-value=0.0018  Score=52.19  Aligned_cols=22  Identities=41%  Similarity=0.522  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .|+|+|++|||||||++.|.+.
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~   25 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQR   25 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            6899999999999999999876

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=96.60  E-value=0.0018  Score=52.90  Aligned_cols=24  Identities=33%  Similarity=0.346  Sum_probs=21.9

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      -.++++|++|+|||||++.|.|..
T Consensus        25 e~~~i~G~nGsGKSTLl~~l~G~~   48 (206)
T TIGR03608        25 KMYAIIGESGSGKSTLLNIIGLLE   48 (206)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCC
Confidence            379999999999999999999873

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK14530 adenylate kinase; Provisional

Probab=96.60  E-value=0.0017  Score=53.60  Aligned_cols=25  Identities=24%  Similarity=0.486  Sum_probs=22.0

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCc
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      .++|+|+|+|||||||+.+.|....
T Consensus         3 ~~~I~i~G~pGsGKsT~~~~La~~~   27 (215)
T PRK14530          3 QPRILLLGAPGAGKGTQSSNLAEEF   27 (215)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            3589999999999999999998654

>PRK08118 topology modulation protein; Reviewed

Probab=96.59  E-value=0.0018  Score=51.32  Aligned_cols=23  Identities=26%  Similarity=0.453  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .+|+|+|++|||||||...|...
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999876

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=96.58  E-value=0.0012  Score=51.80  Aligned_cols=22  Identities=27%  Similarity=0.610  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      +|+|+|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            5899999999999999999865

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=96.58  E-value=0.0019  Score=51.54  Aligned_cols=22  Identities=27%  Similarity=0.391  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .++|+|++|||||||++.|...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998775

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.57  E-value=0.0019  Score=52.58  Aligned_cols=25  Identities=32%  Similarity=0.458  Sum_probs=22.5

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCc
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      .-.++|+|+.|+|||||+..|+|..
T Consensus        27 Gev~ailGPNGAGKSTlLk~LsGel   51 (259)
T COG4559          27 GEVLAILGPNGAGKSTLLKALSGEL   51 (259)
T ss_pred             CcEEEEECCCCccHHHHHHHhhCcc
Confidence            4479999999999999999999973

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=96.57  E-value=0.0019  Score=53.43  Aligned_cols=23  Identities=30%  Similarity=0.466  Sum_probs=21.4

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      -.++++|+.|+|||||++.|.|.
T Consensus        31 ~~~~i~G~nGsGKSTLl~~l~Gl   53 (220)
T cd03293          31 EFVALVGPSGCGKSTLLRIIAGL   53 (220)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            36999999999999999999987

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=96.57  E-value=0.0018  Score=53.48  Aligned_cols=23  Identities=26%  Similarity=0.528  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      -.++++|+.|+|||||++.|.|.
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~Gl   49 (222)
T cd03224          27 EIVALLGRNGAGKTTLLKTIMGL   49 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            47999999999999999999986

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=96.57  E-value=0.0019  Score=53.08  Aligned_cols=24  Identities=25%  Similarity=0.387  Sum_probs=21.9

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      -.++++|++|+|||||++.|.|..
T Consensus        28 ~~~~i~G~nGsGKSTLl~~l~G~~   51 (214)
T cd03292          28 EFVFLVGPSGAGKSTLLKLIYKEE   51 (214)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            479999999999999999999973

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=96.57  E-value=0.0019  Score=53.08  Aligned_cols=24  Identities=25%  Similarity=0.349  Sum_probs=21.8

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .-.++++|+.|+|||||++.|.|.
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~l~G~   49 (213)
T cd03259          26 GEFLALLGPSGCGKTTLLRLIAGL   49 (213)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            347999999999999999999986

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=96.56  E-value=0.002  Score=52.88  Aligned_cols=23  Identities=13%  Similarity=0.283  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      -.++++|+.|+|||||++.|.|.
T Consensus        27 ~~~~i~G~nGsGKSTLl~~l~G~   49 (210)
T cd03269          27 EIFGLLGPNGAGKTTTIRMILGI   49 (210)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            36999999999999999999987

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=96.56  E-value=0.0019  Score=53.29  Aligned_cols=24  Identities=25%  Similarity=0.425  Sum_probs=21.8

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      -.++++|+.|+|||||++.|.|..
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~Gl~   52 (220)
T cd03263          29 EIFGLLGHNGAGKTTTLKMLTGEL   52 (220)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            379999999999999999999873

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=96.56  E-value=0.002  Score=51.43  Aligned_cols=24  Identities=29%  Similarity=0.390  Sum_probs=21.8

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      -.++++|+.|+|||||++.|.|..
T Consensus        27 ~~~~i~G~nGsGKSTLl~~l~G~~   50 (178)
T cd03229          27 EIVALLGPSGSGKSTLLRCIAGLE   50 (178)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            379999999999999999999873

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=96.55  E-value=0.0019  Score=54.17  Aligned_cols=24  Identities=33%  Similarity=0.481  Sum_probs=21.8

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      -.++++|+.|||||||++.|.|..
T Consensus        29 e~~~l~G~nGsGKSTLl~~l~Gl~   52 (243)
T TIGR02315        29 EFVAIIGPSGAGKSTLLRCINRLV   52 (243)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCc
Confidence            479999999999999999999863

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=96.55  E-value=0.0013  Score=52.28  Aligned_cols=24  Identities=38%  Similarity=0.472  Sum_probs=21.7

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      ..+++.|++|+|||||+++|+...
T Consensus         5 ~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           5 LLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhc
Confidence            468999999999999999999874

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=96.54  E-value=0.0025  Score=50.20  Aligned_cols=25  Identities=24%  Similarity=0.384  Sum_probs=22.4

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCc
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      .-.++++|+.|+|||||++.|.|..
T Consensus        26 Ge~~~l~G~nGsGKSTLl~~i~G~~   50 (163)
T cd03216          26 GEVHALLGENGAGKSTLMKILSGLY   50 (163)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4479999999999999999999873

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=96.53  E-value=0.002  Score=53.70  Aligned_cols=24  Identities=25%  Similarity=0.401  Sum_probs=21.9

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      -.++++|+.|+|||||++.|.|..
T Consensus        32 e~~~l~G~nGsGKSTLl~~l~G~~   55 (233)
T cd03258          32 EIFGIIGRSGAGKSTLIRCINGLE   55 (233)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            479999999999999999999873

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>smart00072 GuKc Guanylate kinase homologues

Probab=96.53  E-value=0.0082  Score=48.21  Aligned_cols=23  Identities=35%  Similarity=0.601  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCc
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      .|+++|++||||+||.+.|....
T Consensus         4 ~ivl~Gpsg~GK~tl~~~L~~~~   26 (184)
T smart00072        4 PIVLSGPSGVGKGTLLAELIQEI   26 (184)
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            58999999999999999998873

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=96.53  E-value=0.0026  Score=47.49  Aligned_cols=23  Identities=30%  Similarity=0.510  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..++++|++|+||||++..+...
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~   25 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARE   25 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhc
Confidence            47999999999999999999886

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	269
3pqc_A	195	Crystal Structure Of Thermotoga Maritima Ribosome B		1e-25
1pui_A	210	Structure Of Engb Gtpase Length = 210		2e-25
1sul_A	195	Crystal Structure Of The Apo-Ysxc Length = 195		6e-25
4dhe_A	223	Crystal Structure Of A Probable Gtp-Binding Protein		1e-19
3a1w_A	168	Crystal Structue Of The G Domain Of T. Maritima Feo		9e-07
3a1t_A	258	Crystal Structue Of The Cytosolic Domain Of T. Mari		1e-06
3a1s_A	258	Crystal Structue Of The Cytosolic Domain Of T. Mari		3e-05
4ac9_A	482	Crystal Structure Of Translation Elongation Factor		4e-05
2cxx_A	190	Crystal Structure Of A Probable Gtp-binding Protein		4e-05
1puj_A	282	Structure Of B. Subtilis Ylqf Gtpase Length = 282		4e-05
3qq5_A	423	Crystal Structure Of The [fefe]-Hydrogenase Maturat		4e-04

>pdb|3PQC|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN COMPLEX WITH GDP Length = 195

Iteration: 1
 Score =  113 bits (282), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/194 (35%), Positives = 111/194 (57%), Gaps = 9/194 (4%)
Query: 75  LEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF 134
           +E    A+    +P P   E+AF GRSNVGKSS+LNAL  +  +   S  PG T++INF+
Sbjct: 6   VELVKVARTPGDYPPPLKGEVAFVGRSNVGKSSLLNALFNR-KIAFVSKTPGKTRSINFY 64
Query: 135 KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHE 194
            + +K   VDLPGYG+A   ++ +  W+ LV++Y   R SL+ V LL+D +  + P+D +
Sbjct: 65  LVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGR--IPPQDSD 122
Query: 195 L--ISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM-VSSKSGA 251
           L  +  M+     + +VLTK D V    ++ RA ++EE  K  +   +  ++  SS +G 
Sbjct: 123 LMMVEWMKSLNIPFTIVLTKMDKV---KMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGE 179
Query: 252 GIRSLRTVLSKIAR 265
           GI  L  ++S + +
Sbjct: 180 GISELLDLISTLLK 193

>pdb|1PUI|A Chain A, Structure Of Engb Gtpase Length = 210

Iteration: 1
 Score =  112 bits (280), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/188 (39%), Positives = 100/188 (53%), Gaps = 5/188 (2%)
Query: 76  EFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK 135
            F  +A      P+    E+AFAGRSN GKSS LN LT Q  + RTS  PG TQ IN F+
Sbjct: 10  HFVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFE 69
Query: 136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHEL 195
           +     LVDLPGYG+A   EE+K  W+  + EY+  R SL+ + +L+D +  +K  D ++
Sbjct: 70  VADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQM 129
Query: 196 ISLMERSQTKYQVVLTKTDTVFPIDVARRAM--QIEESLKANNSLVQPVMMVSSKSGAGI 253
           I     S     V+LTK D +     AR+A    + E++ A N  VQ V   SS    G+
Sbjct: 130 IEWAVDSNIAVLVLLTKADKL--ASGARKAQLNMVREAVLAFNGDVQ-VETFSSLKKQGV 186
Query: 254 RSLRTVLS 261
             LR  L 
Sbjct: 187 DKLRQKLD 194

>pdb|1SUL|A Chain A, Crystal Structure Of The Apo-Ysxc Length = 195

Iteration: 1
 Score =  110 bits (276), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 55/143 (38%), Positives = 83/143 (58%)
Query: 74  KLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF 133
           K E   +A     +P   LPEIA AGRSNVGKSS +N+L  +  + RTS KPG TQT+NF
Sbjct: 5   KSEIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNF 64
Query: 134 FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH 193
           + +  +L  VD+PGYGFA   +  ++AW  +++ Y++TR  LK V  ++D +      D 
Sbjct: 65  YIINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDV 124
Query: 194 ELISLMERSQTKYQVVLTKTDTV 216
           ++   ++       V+ TK D +
Sbjct: 125 QMYEFLKYYGIPVIVIATKADKI 147

>pdb|4DHE|A Chain A, Crystal Structure Of A Probable Gtp-Binding Protein Engb From Burkholderia Thailandensis Length = 223

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/142 (37%), Positives = 70/142 (49%), Gaps = 4/142 (2%)
Query: 77  FFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL 136
           FF         P    PEIAFAGRSN GKS+ +N L  Q  +   S  PG TQ IN+F +
Sbjct: 14  FFTTVNHLRDLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSV 73
Query: 137 GTK----LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD 192
           G        LVDLPGYG+A      K  WE+L+  Y+ TR  L  + L++D +  +   D
Sbjct: 74  GPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELD 133
Query: 193 HELISLMERSQTKYQVVLTKTD 214
             +I     +      +LTK D
Sbjct: 134 RRMIEWFAPTGKPIHSLLTKCD 155

>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob Iron Iransporter Length = 168

Iteration: 1
 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 83/182 (45%), Gaps = 29/182 (15%)
Query: 94  EIAFAGRSNVGKSSMLNALT------RQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 147
           ++A AG  NVGK+S+ NALT        W  V    K G+     F   G  + L+DLPG
Sbjct: 7   KVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGV-----FTYKGYTINLIDLPG 61
Query: 148 -YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKY 206
            Y   Y+  + K A + L+K           V L+ D+   V P +  L  L+E  + + 
Sbjct: 62  TYSLGYSSIDEKIARDYLLKG------DADLVILVADS---VNP-EQSLYLLLEILEMEK 111
Query: 207 QVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF 266
           +V+L  T     ID A++     +  +    L  PV+  SS +G G+  L+    KI  +
Sbjct: 112 KVILAMT----AIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLEELK---EKIVEY 164
Query: 267 AK 268
           A+
Sbjct: 165 AQ 166

>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima Feob Iron Iransporter In Gdp Form Ii Length = 258

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 82/181 (45%), Gaps = 29/181 (16%)
Query: 95  IAFAGRSNVGKSSMLNALT------RQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG- 147
           +A AG  NVGK+S+ NALT        W  V    K G+     F   G  + L+DLPG 
Sbjct: 8   VALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGV-----FTYKGYTINLIDLPGT 62
Query: 148 YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ 207
           Y   Y+  + K A + L+K           V L+ D+   V P +  L  L+E  + + +
Sbjct: 63  YSLGYSSIDEKIARDYLLKG------DADLVILVADS---VNP-EQSLYLLLEILEMEKK 112
Query: 208 VVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFA 267
           V+L  T     ID A++     +  +    L  PV+  SS +G G+  L+    KI  +A
Sbjct: 113 VILAMT----AIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLEELK---EKIVEYA 165
Query: 268 K 268
           +
Sbjct: 166 Q 166

>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima Feob Iron Iransporter In Gdp Form I Length = 258

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 79/182 (43%), Gaps = 29/182 (15%)
Query: 94  EIAFAGRSNVGKSSMLNALT------RQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 147
           ++A AG  NVGK+S+ NALT        W  V    K G+     F   G  + L+DLPG
Sbjct: 7   KVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGV-----FTYKGYTINLIDLPG 61
Query: 148 -YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKY 206
            Y   Y+  + K A + L+K           V L+ D+   V P     + L      K 
Sbjct: 62  TYSLGYSSIDEKIARDYLLKG------DADLVILVADS---VNPEQSLYLLLEILEXEK- 111
Query: 207 QVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF 266
           +V+L  T     ID A++     +  +    L  PV+  SS +G G+  L+    KI  +
Sbjct: 112 KVILAXT----AIDEAKKTGXKIDRYELQKHLGIPVVFTSSVTGEGLEELK---EKIVEY 164
Query: 267 AK 268
           A+
Sbjct: 165 AQ 166

>pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb From Methanococcus Maripaludis In Complex With Gdp Length = 482

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 84/184 (45%), Gaps = 24/184 (13%)
Query: 88  PAPDLPEIAFA--GRSNVGKSSMLNALTRQWGV-----VRTSDKPGLTQTINF--FKL-G 137
           P  D   I     G  + GK+++   LT          +  S K G+T  I F  FKL  
Sbjct: 13  PHMDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN 72
Query: 138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS 197
            ++ LVD PG+              +L++  VS    +    +++D K G K +  E + 
Sbjct: 73  YRITLVDAPGHA-------------DLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHML 119
Query: 198 LMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ-PVMMVSSKSGAGIRSL 256
           +++       VV+TK+D     ++ R  M ++  L++ ++L    ++ +S+K+G G+  L
Sbjct: 120 ILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDEL 179
Query: 257 RTVL 260
           + ++
Sbjct: 180 KNLI 183

>pdb|2CXX|A Chain A, Crystal Structure Of A Probable Gtp-binding Protein Engb Length = 190

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 25/188 (13%)
Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYA- 153
           I FAGRSNVGKS+++  LT +   VR   +PG+T+ I   +      ++D PG+GF    
Sbjct: 4   IIFAGRSNVGKSTLIYRLTGK--KVRRGKRPGVTRKIIEIEWKNH-KIIDXPGFGFXXGL 60
Query: 154 ----KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK--------W---GVKPRDHELISL 198
               +E +KD   E+V        ++    L++D K        W   G  P D E    
Sbjct: 61  PKEVQERIKD---EIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQF 117
Query: 199 MERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM-VSSKSGAGIRSLR 257
           +        V + K D +   +V      + E  +   S +  V + +S+K G  I  L+
Sbjct: 118 LRELDIPTIVAVNKLDKI--KNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLK 175
Query: 258 TVLSKIAR 265
             + ++ R
Sbjct: 176 NRIFEVIR 183

>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase Length = 282

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Query: 99  GRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 147
           G  NVGKS+++N L ++  + +T D+PG+T +  + K+G +L L+D PG
Sbjct: 127 GIPNVGKSTLINRLAKK-NIAKTGDRPGITTSQQWVKVGKELELLDTPG 174

>pdb|3QQ5|A Chain A, Crystal Structure Of The [fefe]-Hydrogenase Maturation Protein Hydf Length = 423

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 60/129 (46%), Gaps = 19/129 (14%)
Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-----QTINFFKLGTKLCLVDLPGYG 149
           I  AGR NVGKSS +NAL  Q  V   SD  G T     +++    +G  + LVD PG  
Sbjct: 37  IVVAGRRNVGKSSFMNALVGQ-NVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGL- 93
Query: 150 FAYAKEEVKDAWEELVKEYV--STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ 207
                    D   EL +  V  + RV  +  C ++ T     P + ++++L +  +  + 
Sbjct: 94  ---------DDVGELGRLRVEKARRVFYRADCGILVTDSAPTPYEDDVVNLFKEMEIPFV 144
Query: 208 VVLTKTDTV 216
           VV+ K D +
Sbjct: 145 VVVNKIDVL 153

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	269
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	2e-65
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	4e-65
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	1e-63
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	8e-62
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	5e-40
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	4e-23
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	4e-13
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	5e-08
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	6e-08
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	1e-07
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	2e-07
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	7e-07
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	8e-07
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	9e-07
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	9e-07
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	2e-06
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	3e-06
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	4e-06
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	5e-06
2wji_A	165	Ferrous iron transport protein B homolog; membrane	5e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	6e-06
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	6e-06
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	7e-06
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	7e-06
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	1e-05
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	1e-05
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	2e-05
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	4e-05
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	7e-05
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	8e-05
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	1e-04
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	1e-04
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	1e-04
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	1e-04
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	2e-04
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	1e-04
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	4e-04
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	8e-04

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 Length = 210

 Score =  202 bits (515), Expect = 2e-65
 Identities = 71/195 (36%), Positives = 99/195 (50%), Gaps = 1/195 (0%)

Query: 69  NIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT 128
           N+   +  F  +A      P+    E+AFAGRSN GKSS LN LT Q  + RTS  PG T
Sbjct: 3   NLNYQQTHFVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRT 62

Query: 129 QTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV 188
           Q IN F++     LVDLPGYG+A   EE+K  W+  + EY+  R SL+ + +L+D +  +
Sbjct: 63  QLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPL 122

Query: 189 KPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSK 248
           K  D ++I     S     V+LTK D +       +   + E++ A N  V  V   SS 
Sbjct: 123 KDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDV-QVETFSSL 181

Query: 249 SGAGIRSLRTVLSKI 263
              G+  LR  L   
Sbjct: 182 KKQGVDKLRQKLDTW 196

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* Length = 195

 Score =  200 bits (512), Expect = 4e-65
 Identities = 61/191 (31%), Positives = 101/191 (52%), Gaps = 2/191 (1%)

Query: 73  NKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 132
            K E   +A     +P   LPEIA AGRSNVGKSS +N+L  +  + RTS KPG TQT+N
Sbjct: 4   TKSEIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLN 63

Query: 133 FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD 192
           F+ +  +L  VD+PGYGFA   +  ++AW  +++ Y++TR  LK V  ++D +      D
Sbjct: 64  FYIINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDD 123

Query: 193 HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAG 252
            ++   ++       V+ TK D +      + A  + ++L  +      +++ SS++  G
Sbjct: 124 VQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPE--DELILFSSETKKG 181

Query: 253 IRSLRTVLSKI 263
                  + K+
Sbjct: 182 KDEAWGAIKKM 192

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A Length = 195

 Score =  197 bits (502), Expect = 1e-63
 Identities = 63/191 (32%), Positives = 102/191 (53%), Gaps = 3/191 (1%)

Query: 73  NKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 132
             +E    A+    +P P   E+AF GRSNVGKSS+LNAL  +  +   S  PG T++IN
Sbjct: 4   RDVELVKVARTPGDYPPPLKGEVAFVGRSNVGKSSLLNALFNR-KIAFVSKTPGKTRSIN 62

Query: 133 FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD 192
           F+ + +K   VDLPGYG+A   ++ +  W+ LV++Y   R SL+ V LL+D +   +  D
Sbjct: 63  FYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSD 122

Query: 193 HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAG 252
             ++  M+     + +VLTK D V   + A++  +  +           ++  SS +G G
Sbjct: 123 LMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEY--TIIPTSSVTGEG 180

Query: 253 IRSLRTVLSKI 263
           I  L  ++S +
Sbjct: 181 ISELLDLISTL 191

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} Length = 223

 Score =  193 bits (492), Expect = 8e-62
 Identities = 60/201 (29%), Positives = 88/201 (43%), Gaps = 8/201 (3%)

Query: 73  NKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 132
           ++  FF         P    PEIAFAGRSN GKS+ +N L  Q  +   S  PG TQ IN
Sbjct: 10  HQARFFTTVNHLRDLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHIN 69

Query: 133 FFKLG----TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV 188
           +F +G        LVDLPGYG+A      K  WE+L+  Y+ TR  L  + L++D +  +
Sbjct: 70  YFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPL 129

Query: 189 KPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP----VMM 244
              D  +I     +      +LTK D +   +        ++SL A           V +
Sbjct: 130 TELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQL 189

Query: 245 VSSKSGAGIRSLRTVLSKIAR 265
            S+    G+     ++    R
Sbjct: 190 FSALKRTGLDDAHALIESWLR 210

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 Length = 190

 Score =  136 bits (344), Expect = 5e-40
 Identities = 41/185 (22%), Positives = 82/185 (44%), Gaps = 17/185 (9%)

Query: 92  LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFA 151
           +  I FAGRSNVGKS+++  LT +   VR   +PG+T+ I   +      ++D+PG+GF 
Sbjct: 1   MATIIFAGRSNVGKSTLIYRLTGKK--VRRGKRPGVTRKIIEIEWKNHK-IIDMPGFGFM 57

Query: 152 YAKE-EVKDAWEELVKEYVSTRV-SLKRVCLLIDTK-----------WGVKPRDHELISL 198
                EV++  ++ +  ++     ++    L++D K            G  P D E    
Sbjct: 58  MGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQF 117

Query: 199 MERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRT 258
           +        V + K D +  +      +  +  +  +  + +  + +S+K G  I  L+ 
Sbjct: 118 LRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSE-IDKVFIPISAKFGDNIERLKN 176

Query: 259 VLSKI 263
            + ++
Sbjct: 177 RIFEV 181

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413

 Score = 96.3 bits (239), Expect = 4e-23
 Identities = 33/221 (14%), Positives = 67/221 (30%), Gaps = 33/221 (14%)

Query: 64  ERIEENIFRNKLEFFAAAKVSSSFPAPD--LPEIAFAGRSNVGKSSMLNALTRQWG---V 118
             IE  +    ++    + +S +    D  +  +A  G +  GKSS +N L         
Sbjct: 40  NLIELRMRAGNIQL-TNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEG 98

Query: 119 VRTSDKPGLTQTINFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLK 176
              +    +T   + +K      +   DLPG G      +           Y+      +
Sbjct: 99  AAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPD----------TYLEKMKFYE 148

Query: 177 RVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQ--------- 227
               +I +    K  D ++   +   + ++  V TK D+    +                
Sbjct: 149 YDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQD 208

Query: 228 ----IEESLKANNSLVQPVMMVSSK--SGAGIRSLRTVLSK 262
                  + + N     P+ ++S+K         L   L  
Sbjct: 209 IRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLIS 249

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} Length = 423

 Score = 67.7 bits (166), Expect = 4e-13
 Identities = 44/178 (24%), Positives = 78/178 (43%), Gaps = 28/178 (15%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-----QTINFFKLGTKLCLVDLPGYG 149
           I  AGR NVGKSS +NAL  Q  V   SD  G T     +++    +G  + LVD PG  
Sbjct: 37  IVVAGRRNVGKSSFMNALVGQ-NVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGL- 93

Query: 150 FAYAKEEVKDAWEELVKEYVSTRVSLKRV---CLLIDTKWGVKPRDHELISLMERSQTKY 206
                ++V +     V+     R    R     L+ D+     P + ++++L +  +  +
Sbjct: 94  -----DDVGELGRLRVE---KARRVFYRADCGILVTDSAPT--PYEDDVVNLFKEMEIPF 143

Query: 207 QVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 264
            VV+ K D +       +A +++   ++       V++VS+    G   +   +S+I 
Sbjct: 144 VVVVNKIDVLGE-----KAEELKGLYESRYEA--KVLLVSALQKKGFDDIGKTISEIL 194

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* Length = 301

 Score = 52.1 bits (124), Expect = 5e-08
 Identities = 33/172 (19%), Positives = 68/172 (39%), Gaps = 28/172 (16%)

Query: 95  IAFAGRSNVGKSSMLNAL-----TRQWGVVRTSDKPGLTQTINFFKLG-------TKLCL 142
           +   G S +GKS+++N+L       +  +   ++K   T  I    +         +L +
Sbjct: 21  LMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTV 80

Query: 143 VDLPGYGFA----YAKEEVKDAWEELVKEYVSTRVSLKR---------VCLLIDTKWGVK 189
           VD PGYG A       + +    +E  + Y+     L R          C    + +G  
Sbjct: 81  VDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHG 140

Query: 190 PRDHELISLMERSQTKYQV--VLTKTDTVFPIDVARRAMQIEESLKANNSLV 239
            +  + ++ M+    K  +  V+ K DT+   +  R   +I + ++ +N  +
Sbjct: 141 LKPLD-VAFMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKI 191

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 Length = 282

 Score = 51.5 bits (124), Expect = 6e-08
 Identities = 19/46 (41%), Positives = 33/46 (71%), Gaps = 1/46 (2%)

Query: 102 NVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 147
           NVGKS+++N L ++  + +T D+PG+T +  + K+G +L L+D PG
Sbjct: 130 NVGKSTLINRLAKK-NIAKTGDRPGITTSQQWVKVGKELELLDTPG 174

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* Length = 262

 Score = 50.3 bits (121), Expect = 1e-07
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 102 NVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 147
           N GKS+++N L  +        +PG+T+ I +F L   + ++D PG
Sbjct: 109 NTGKSTIINKLKGK-RASSVGAQPGITKGIQWFSLENGVKILDTPG 153

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} Length = 368

 Score = 50.7 bits (121), Expect = 2e-07
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 95  IAFAGRSNVGKSSMLNALT-----RQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 148
           +   G +NVGKS+ +N +          V+ TS  PG T  +    L  +  L D PG 
Sbjct: 163 VYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGI 221

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} Length = 161

 Score = 47.1 bits (113), Expect = 7e-07
 Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 18/130 (13%)

Query: 92  LPEIAFAGRSNVGKSSMLNALTRQWGVVRTS---DKPGLTQTINFFK---LGTKLCLVDL 145
           + ++   GR NVGKSS+ N L ++    R++   D PG+T+ +          +  LVD 
Sbjct: 1   MHKVVIVGRPNVGKSSLFNRLLKK----RSAVVADVPGVTRDLKEGVVETDRGRFLLVDT 56

Query: 146 PGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCL-LIDTKWGVKPRDHELISLMERSQT 204
            G           D WE+ ++E V   +    V L  +D +  +   D+E+   + R   
Sbjct: 57  GGL-------WSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGK 109

Query: 205 KYQVVLTKTD 214
              +V TK D
Sbjct: 110 PVILVATKVD 119

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* Length = 272

 Score = 48.1 bits (115), Expect = 8e-07
 Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 18/73 (24%)

Query: 95  IAFAGRSNVGKSSMLNALT--RQ----WGVVRTSDKPGLT--QTINFFKLGTKLCLVDLP 146
           IA  G  N GK+S+ N +T   Q    W        PG+T  +     K    L + DLP
Sbjct: 6   IALIGNPNSGKTSLFNLITGHNQRVGNW--------PGVTVERKSGLVKKNKDLEIQDLP 57

Query: 147 G-YGF-AYAKEEV 157
           G Y    Y+ E  
Sbjct: 58  GIYSMSPYSPEAK 70

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* Length = 482

 Score = 48.7 bits (117), Expect = 9e-07
 Identities = 38/192 (19%), Positives = 69/192 (35%), Gaps = 56/192 (29%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDK------PGLT-----QTINFFKLGTKLCLV 143
           +   G+ NVGKS++LN L  +       D+      PG T     + I     G    +V
Sbjct: 246 MVIVGKPNVGKSTLLNRLLNE-------DRAIVTDIPGTTRDVISEEIVI--RGILFRIV 296

Query: 144 DLPG-----------YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD 192
           D  G            G     +E++ A                 V  ++D    +   D
Sbjct: 297 DTAGVRSETNDLVERLGIERTLQEIEKA---------------DIVLFVLDASSPLDEED 341

Query: 193 HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAG 252
            +++  ++    +Y VV+ K D V  I+        EE +K      + ++ +S+  G G
Sbjct: 342 RKILERIK--NKRYLVVINKVDVVEKIN--------EEEIKNKLGTDRHMVKISALKGEG 391

Query: 253 IRSLRTVLSKIA 264
           +  L   + +  
Sbjct: 392 LEKLEESIYRET 403

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} Length = 369

 Score = 48.4 bits (115), Expect = 9e-07
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 4/72 (5%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWG----VVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGF 150
           +   G +NVGKS+ +N +  +      V+ TS  PG T  +    L +   L D PG   
Sbjct: 165 VYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPGIIN 224

Query: 151 AYAKEEVKDAWE 162
            +      DA +
Sbjct: 225 HHQMAHFVDARD 236

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} Length = 228

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 33/186 (17%), Positives = 65/186 (34%), Gaps = 22/186 (11%)

Query: 90  PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLP 146
           P    I  +G  NVGKSS +N ++R    V        T+ +    F     K  ++D P
Sbjct: 27  PHKKTIILSGAPNVGKSSFMNIVSR--ANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTP 84

Query: 147 GYGFAYAKEEVKDAWEELVKEYVSTRVSLK--RVCLL----IDTKWGVKPRD--HELISL 198
           G         +  A+E      ++T  +L      +L    I  + G+  ++  +   S+
Sbjct: 85  GL--------LDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSI 136

Query: 199 MERSQTKYQ-VVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLR 257
                 K   +   K D      ++     + + +  N          S+ +G G+   +
Sbjct: 137 KSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAK 196

Query: 258 TVLSKI 263
               ++
Sbjct: 197 ITACEL 202

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262

 Score = 46.4 bits (110), Expect = 3e-06
 Identities = 30/157 (19%), Positives = 50/157 (31%), Gaps = 23/157 (14%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFA 151
           +   G+  VGKSS +N+L  +  VVR S                 G  + ++D PG    
Sbjct: 39  VLVLGKGGVGKSSTVNSLIGE-QVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLV-- 95

Query: 152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ---- 207
                V     EL+K ++  R       LL   +  V   D     ++      +     
Sbjct: 96  -EAGYVNHQALELIKGFLVNR---TIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIW 151

Query: 208 ----VVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ 240
               +VLT      P +     +  E      +  + 
Sbjct: 152 CKTLLVLTHAQFSPPDE-----LSYETFSSKRSDSLL 183

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* Length = 274

 Score = 45.9 bits (108), Expect = 4e-06
 Identities = 33/172 (19%), Positives = 63/172 (36%), Gaps = 27/172 (15%)

Query: 98  AGRSNVGKSSMLNAL-----------TRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLP 146
            G S +GKS+++N+L                + +T         I    +   L +VD P
Sbjct: 14  VGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTP 73

Query: 147 GYGFAYAKE----EVKDAWEELVKEYVSTRVSLKR---------VCLLIDTKWGVKPRDH 193
           G+G A         V D  +   ++Y++    + R          CL      G   +  
Sbjct: 74  GFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPL 133

Query: 194 ELISLMERSQTKYQV--VLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM 243
           + I  M+R   K  +  ++ K DT+ P +  +   QI + ++ +   +    
Sbjct: 134 D-IEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFP 184

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 361

 Score = 46.4 bits (109), Expect = 5e-06
 Identities = 34/172 (19%), Positives = 67/172 (38%), Gaps = 28/172 (16%)

Query: 95  IAFAGRSNVGKSSMLNAL-----TRQWGVVRTSDKPGLTQTINFFKLG-------TKLCL 142
           +   G S +GKS+++N+L       +  +   ++K   T  I    +         +L +
Sbjct: 40  LMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTV 99

Query: 143 VDLPGYGFAYAKE----EVKDAWEELVKEYVSTRVSLKR---------VCLLIDTKWG-- 187
           VD PGYG A         +    +E  + Y+     L R          C    + +G  
Sbjct: 100 VDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHG 159

Query: 188 VKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLV 239
           +KP D   +  +  ++     V+ K DT+   +  R   +I + ++ +N  +
Sbjct: 160 LKPLDVAFMKAIH-NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKI 210

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* Length = 165

 Score = 44.8 bits (107), Expect = 5e-06
 Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 11/70 (15%)

Query: 95  IAFAGRSNVGKSSMLNALT--RQWGVVRTSDKPGLT--QTINFFKL-GTKLCLVDLPG-Y 148
           IA  G  NVGKS++ NALT           + PG+T  +    F+  G K  +VDLPG Y
Sbjct: 6   IALIGNPNVGKSTIFNALTGENV----YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVY 61

Query: 149 GF-AYAKEEV 157
              A + +E+
Sbjct: 62  SLTANSIDEI 71

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 6e-06
 Identities = 37/279 (13%), Positives = 72/279 (25%), Gaps = 72/279 (25%)

Query: 17  QPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKL- 75
           +    +  FVE+ L          R  Y   L +P+       S       E   R++L 
Sbjct: 74  KQEEMVQKFVEEVL----------RINYKF-LMSPIKTEQRQPSMMTRMYIE--QRDRLY 120

Query: 76  ---EFFAAAKVSSSFPAPDL--------PE--IAFAGRSNVGKSSMLNALTRQ------- 115
              + FA   VS   P   L        P   +   G    GK+ +   +          
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180

Query: 116 -----WGVVRTSDKPG--LTQTINFF-KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167
                W  ++  + P   L        ++                    ++     L+K 
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240

Query: 168 YVSTRVSLKRVCLLI-DTKWGVKPRDHELISLME-RSQTKYQVVLTKTDTVFPIDVARRA 225
                      CLL+          + +  +      +    ++ T            R 
Sbjct: 241 KPYEN------CLLVLLNVQ-----NAKAWNAFNLSCKI---LLTT------------RF 274

Query: 226 MQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 264
            Q+ + L A       + +           ++++L K  
Sbjct: 275 KQVTDFLSAAT--TTHISLDHHSMTLTPDEVKSLLLKYL 311

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} Length = 188

 Score = 44.9 bits (107), Expect = 6e-06
 Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 19/74 (25%)

Query: 95  IAFAGRSNVGKSSMLNALT--RQ----WGVVRTSDKPGLT--QTINFFKL-GTKLCLVDL 145
           IA  G  NVGKS++ NALT        W        PG+T  +    F+  G K  +VDL
Sbjct: 10  IALIGNPNVGKSTIFNALTGENVYIGNW--------PGVTVEKKEGEFEYNGEKFKVVDL 61

Query: 146 PG-YGF-AYAKEEV 157
           PG Y   A + +E+
Sbjct: 62  PGVYSLTANSIDEI 75

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Length = 172

 Score = 44.5 bits (106), Expect = 6e-06
 Identities = 42/191 (21%), Positives = 69/191 (36%), Gaps = 50/191 (26%)

Query: 95  IAFAGRSNVGKSSMLNALTRQ-WGVVRTSDKPGLT-----QTINFFKLGTKLCLVDLPG- 147
           +  AGR N GKSS+LNAL  +   +V  +D  G T     + I+    G  L ++D  G 
Sbjct: 7   VVIAGRPNAGKSSLLNALAGREAAIV--TDIAGTTRDVLREHIHI--DGMPLHIIDTAGL 62

Query: 148 ---------YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISL 198
                     G   A +E++ A                RV  ++D          E+   
Sbjct: 63  REASDEVERIGIERAWQEIEQA---------------DRVLFMVDGTTTDAVDPAEIWPE 107

Query: 199 MER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRS 255
                 ++    VV  K D               E+L  +      ++ +S+++G G+  
Sbjct: 108 FIARLPAKLPITVVRNKAD------------ITGETLGMSEVNGHALIRLSARTGEGVDV 155

Query: 256 LRTVLSKIARF 266
           LR  L +   F
Sbjct: 156 LRNHLKQSMGF 166

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} Length = 462

 Score = 46.0 bits (110), Expect = 7e-06
 Identities = 39/191 (20%), Positives = 64/191 (33%), Gaps = 56/191 (29%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDK------PGLT-----QTINFFKLGTKLCLV 143
           +A  GR NVGKSS+LNA ++       SD+      PG T       +     G  + ++
Sbjct: 227 VAIVGRPNVGKSSLLNAWSQ-------SDRAIVTDLPGTTRDVVESQLVVG--GIPVQVL 277

Query: 144 DLPG----------YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH 193
           D  G           G   +++    A                 V L ID   G    D 
Sbjct: 278 DTAGIRETSDQVEKIGVERSRQAANTA---------------DLVLLTIDAATGWTTGDQ 322

Query: 194 ELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGI 253
           E+   ++       +V+ K D V    +         +          ++  ++    GI
Sbjct: 323 EIYEQVK--HRPLILVMNKIDLVEKQLITSLEYPENIT---------QIVHTAAAQKQGI 371

Query: 254 RSLRTVLSKIA 264
            SL T + +I 
Sbjct: 372 DSLETAILEIV 382

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} Length = 271

 Score = 45.4 bits (108), Expect = 7e-06
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 19/74 (25%)

Query: 95  IAFAGRSNVGKSSMLNALT--RQ----WGVVRTSDKPGLT--QTINFFKL-GTKLCLVDL 145
           +A  G  NVGK+++ NALT  RQ    W        PG+T  +     +    +  +VDL
Sbjct: 6   VALVGNPNVGKTTIFNALTGLRQHVGNW--------PGVTVEKKEGIMEYREKEFLVVDL 57

Query: 146 PG-YGF-AYAKEEV 157
           PG Y   A++ +E+
Sbjct: 58  PGIYSLTAHSIDEL 71

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A Length = 258

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 19/74 (25%)

Query: 95  IAFAGRSNVGKSSMLNALT--RQ----WGVVRTSDKPGLT--QTINFFKL-GTKLCLVDL 145
           +A AG  NVGK+S+ NALT  +Q    W        PG+T  +    F   G  + L+DL
Sbjct: 8   VALAGCPNVGKTSLFNALTGTKQYVANW--------PGVTVEKKEGVFTYKGYTINLIDL 59

Query: 146 PG-YGF-AYAKEEV 157
           PG Y     + +E 
Sbjct: 60  PGTYSLGYSSIDEK 73

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476

 Score = 44.8 bits (107), Expect = 1e-05
 Identities = 35/193 (18%), Positives = 59/193 (30%), Gaps = 55/193 (28%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDK------PGLT-----QTINFFKLGTKLCLV 143
              AG+ N GKS++LN L  Q       ++      PG T     +        T   L 
Sbjct: 236 TVIAGKPNAGKSTLLNTLLGQ-------ERAIVSHMPGTTRDYIEECFIH--DKTMFRLT 286

Query: 144 DLPG----------YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH 193
           D  G           G   ++ ++ +A                 +  L+D        + 
Sbjct: 287 DTAGLREAGEEIEHEGIRRSRMKMAEA---------------DLILYLLDLGTERLDDEL 331

Query: 194 ELIS--LMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGA 251
             I          K+  V  K D     D   RA+               V+ +S+ +G 
Sbjct: 332 TEIRELKAAHPAAKFLTVANKLDRAANADALIRAIADGTG--------TEVIGISALNGD 383

Query: 252 GIRSLRTVLSKIA 264
           GI +L+  +  + 
Sbjct: 384 GIDTLKQHMGDLV 396

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* Length = 274

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 21/86 (24%)

Query: 95  IAFAGRSNVGKSSMLNALT--RQ----WGVVRTSDKPGLT--QTINFFKL-GTKLCLVDL 145
           I   G  N GK+++ N LT  RQ    W         G+T  +    F     ++ LVDL
Sbjct: 6   IGLIGNPNSGKTTLFNQLTGSRQRVGNW--------AGVTVERKEGQFSTTDHQVTLVDL 57

Query: 146 PG-YGF-AYAKEEVKDAWEELVKEYV 169
           PG Y     + +   D  E++   Y+
Sbjct: 58  PGTYSLTTISSQTSLD--EQIACHYI 81

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* Length = 308

 Score = 43.2 bits (103), Expect = 4e-05
 Identities = 40/181 (22%), Positives = 71/181 (39%), Gaps = 28/181 (15%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT----QTINFFKLGTKLCLVDLPG--- 147
           +A  G+ NVGKS++LN L     V   S K G T      +       ++  +D PG   
Sbjct: 13  VAIVGKPNVGKSTLLNNLLGT-KVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYE 71

Query: 148 --YGFA---YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS-LMER 201
                       E  K + EE           +  +  +ID   G +PRD E+    ++ 
Sbjct: 72  PKKSDVLGHSMVEIAKQSLEE---------ADV--ILFMIDATEGWRPRDEEIYQNFIKP 120

Query: 202 SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLS 261
                 VV+ K D + P   A+  + + + +   +  +  ++ +S+  GA +  L   + 
Sbjct: 121 LNKPVIVVINKIDKIGP---AKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTIL 177

Query: 262 K 262
           K
Sbjct: 178 K 178

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X Length = 301

 Score = 42.4 bits (101), Expect = 7e-05
 Identities = 41/185 (22%), Positives = 72/185 (38%), Gaps = 41/185 (22%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT----INFFKLGTK------LCLVD 144
           IA  GR NVGKS++LN L  Q  +  TS K    QT    I    +G           VD
Sbjct: 11  IAIVGRPNVGKSTLLNKLLGQ-KISITSRKA---QTTRHRI----VGIHTEGAYQAIYVD 62

Query: 145 LPGYGFAYAKEE----VKDAWEELVKEYVSTRVSLKRVCLLID-TKWGVKPRDHELISLM 199
            PG      +       K A   +        V L  V  +++ T+W   P D  +++ +
Sbjct: 63  TPGLHMEEKRAINRLMNKAASSSI------GDVEL--VIFVVEGTRWT--PDDEMVLNKL 112

Query: 200 ERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLV--QPVMMVSSKSGAGIRSLR 257
              +    + + K D V           +   L+   S +    ++ +S+++G  + ++ 
Sbjct: 113 REGKAPVILAVNKVDNVQEKA------DLLPHLQFLASQMNFLDIVPISAETGLNVDTIA 166

Query: 258 TVLSK 262
            ++ K
Sbjct: 167 AIVRK 171

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} Length = 256

 Score = 41.9 bits (99), Expect = 8e-05
 Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 23/78 (29%)

Query: 95  IAFAGRSNVGKSSMLNALT--RQ----WGVVRTSDKPGLT--QTINFFKL-GTKLCLVDL 145
               G  N GK+++ NALT   Q    W        PG+T  +    F L    + + DL
Sbjct: 4   ALLIGNPNCGKTTLFNALTNANQRVGNW--------PGVTVEKKTGEFLLGEHLIEITDL 55

Query: 146 PG------YGFAYAKEEV 157
           PG           +++E 
Sbjct: 56  PGVYSLVANAEGISQDEQ 73

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} Length = 436

 Score = 42.1 bits (100), Expect = 1e-04
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 88  PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT 128
              ++ +    GR NVGKSS++NA+  +  V+  S+  G T
Sbjct: 171 YNEEVIQFCLIGRPNVGKSSLVNAMLGEERVI-VSNVAGTT 210

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} Length = 436

 Score = 41.7 bits (99), Expect = 1e-04
 Identities = 28/131 (21%), Positives = 56/131 (42%), Gaps = 17/131 (12%)

Query: 92  LPEIAFAGRSNVGKSSMLNALTRQWGVVRTS---DKPGLTQTINFFK---LGTKLCLVDL 145
            P +A  GR NVGKS++ N +  +    R S   D PG+T+   +     L     L+D 
Sbjct: 3   KPVVAIVGRPNVGKSTIFNRIAGE----RISIVEDTPGVTRDRIYSSAEWLNYDFNLIDT 58

Query: 146 PGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCL-LIDTKWGVKPRDHELISLMERSQT 204
            G       +   + +   +++     +    V + +++ + GV   D E+  ++ R++ 
Sbjct: 59  GGI------DIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKK 112

Query: 205 KYQVVLTKTDT 215
              + + K D 
Sbjct: 113 PVVLAVNKLDN 123

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} Length = 550

 Score = 42.5 bits (99), Expect = 1e-04
 Identities = 39/198 (19%), Positives = 62/198 (31%), Gaps = 49/198 (24%)

Query: 83  VSSSFPAPDL---PEIAFAGRSNVGKSSMLNALTRQ------WGVVRTSDK--------- 124
            S +    D    P +  AG+ + GK+S +  L  Q       G   T+D          
Sbjct: 53  HSPALEDADFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGET 112

Query: 125 ----PGLT-----------------QTINFFKLGT-------KLCLVDLPGYGFAYAKEE 156
               PG                     +N F            + ++D PG      +  
Sbjct: 113 EGTVPGNALVVDPEKPFRKLNPFGNTFLNRFMCAQLPNQVLESISIIDTPGILSGAKQRV 172

Query: 157 VKDAWEELVKEYVSTRVSLKRVCLLID-TKWGVKPRDHELISLMERSQTKYQVVLTKTDT 215
            +      V  + + RV L  + LL D  K  +     E I  +   + K +VVL K D 
Sbjct: 173 SRGYDFPAVLRWFAERVDL--IILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADM 230

Query: 216 VFPIDVARRAMQIEESLK 233
           V    + R    +  +L 
Sbjct: 231 VETQQLMRVYGALMWALG 248

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 Length = 439

 Score = 42.1 bits (100), Expect = 1e-04
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 90  PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ---TINFFKLGTKLCLVD 144
            D  ++A  GR NVGKS++ NA+  +   +  S  PG T+       F  G K   VD
Sbjct: 178 TDAIKVAIVGRPNVGKSTLFNAILNKERAL-VSPIPGTTRDPVDDEVFIDGRKYVFVD 234

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 Length = 439

 Score = 41.3 bits (98), Expect = 2e-04
 Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 16/132 (12%)

Query: 92  LPEIAFAGRSNVGKSSMLNALTRQWGVVRTS---DKPGLTQTINFFK---LGTKLCLVDL 145
           +  +   GR NVGKS++ N L ++    + +   D+ G+T+          G    LVD 
Sbjct: 1   MATVLIVGRPNVGKSTLFNKLVKK----KKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDT 56

Query: 146 PGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCL-LIDTKWGVKPRDHELISLMERSQT 204
            G       +  +D   + +KE     +    + L ++D K G+   D  L   + +S  
Sbjct: 57  CGV-----FDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTV 111

Query: 205 KYQVVLTKTDTV 216
              +V  K + +
Sbjct: 112 DTILVANKAENL 123

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270

 Score = 41.5 bits (97), Expect = 1e-04
 Identities = 29/176 (16%), Positives = 58/176 (32%), Gaps = 25/176 (14%)

Query: 60  SSERERIEENIFRNKLEFFAAAKV---SSSFPAPDLPE--IAFAGRSNVGKSSMLNALTR 114
           +S+++ + E    N        K+     +    D+    I   G+  VGKSS +N++  
Sbjct: 2   ASQQQTVREWSGINTFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIG 61

Query: 115 QWGVVRTSDKPGLTQT---INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171
           +  VV  S           ++  + G  L ++D PG               ++    + +
Sbjct: 62  E-RVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGL-------IEGGYINDMALNIIKS 113

Query: 172 RVSLKRV-CLLIDTKWGVKPRDHELISLMERSQTKYQ--------VVLTKTDTVFP 218
            +  K +  LL   +      D+    + +     +         V LT      P
Sbjct: 114 FLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 Length = 301

 Score = 40.1 bits (95), Expect = 4e-04
 Identities = 42/189 (22%), Positives = 70/189 (37%), Gaps = 50/189 (26%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT----INFFKLGTK------LCLVD 144
           +A  G+ NVGKS++LN L     V   S +P   QT    +     G        +  VD
Sbjct: 10  VAIVGKPNVGKSTLLNNLLGV-KVAPISPRP---QTTRKRL----RGILTEGRRQIVFVD 61

Query: 145 LPGY-------GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS 197
            PG        G  +  +EV +A  +         V+   V  ++D +    P D  +  
Sbjct: 62  TPGLHKPMDALG-EFMDQEVYEALAD---------VNA--VVWVVDLRHPPTPEDELVAR 109

Query: 198 LMERSQTKYQVVL--TKTDTVFPIDVARRAMQIEESLKANNSLVQ--PVMMVSSKSGAGI 253
            ++    K  ++L   K D              EE++KA + L+      M+S+     +
Sbjct: 110 ALKPLVGKVPILLVGNKLDAA---------KYPEEAMKAYHELLPEAEPRMLSALDERQV 160

Query: 254 RSLRTVLSK 262
             L+  L  
Sbjct: 161 AELKADLLA 169

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357

 Score = 39.4 bits (92), Expect = 8e-04
 Identities = 38/183 (20%), Positives = 72/183 (39%), Gaps = 23/183 (12%)

Query: 90  PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLP 146
            ++P +  AG  NVGKS++L ALT        +  P  T+ IN   F     +  ++D P
Sbjct: 165 LEIPTVVIAGHPNVGKSTLLKALTT--AKPEIASYPFTTRGINVGQFEDGYFRYQIIDTP 222

Query: 147 GYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCL-LIDT----KWGVKPRDHELISLMER 201
           G        E      E+ K+ +     L  + + + D      + ++ + H    +   
Sbjct: 223 GL-LDRPISERN----EIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGE 277

Query: 202 SQTKYQ-VVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL 260
            +     VV+ K D     ++ R    +E+ +K         + +S+  G GI  ++  +
Sbjct: 278 FKDLPFLVVINKIDVADEENIKR----LEKFVKEKG---LNPIKISALKGTGIDLVKEEI 330

Query: 261 SKI 263
            K 
Sbjct: 331 IKT 333

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	269
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.96
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.96
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.96
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.96
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.94
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.93
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.93
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.93
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.93
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.91
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.91
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.9
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.9
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.9
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.9
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.9
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.9
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.9
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.9
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.89
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.89
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.89
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.89
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.89
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.88
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.88
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.88
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.88
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.88
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.88
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.88
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.88
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.88
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.88
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.87
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.87
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.87
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.87
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.87
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.87
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.87
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.87
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.87
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.87
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.87
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.87
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.87
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.87
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.86
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.86
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.86
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.86
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.86
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.86
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.86
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.86
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.86
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.86
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.86
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.86
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.86
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.86
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.86
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.86
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.86
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.86
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.86
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.86
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.86
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.85
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.85
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.85
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.85
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.85
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.85
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.85
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.85
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.85
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.85
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.85
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.85
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.85
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.85
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.85
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.85
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.85
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.85
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.85
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.85
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.85
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.85
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.85
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.84
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.84
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.84
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.84
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.84
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.84
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.84
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.84
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.84
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.84
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.84
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.84
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.84
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.84
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.84
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.84
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.84
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.84
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.84
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.84
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.84
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.84
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.84
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.84
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.84
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.83
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.83
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.83
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.83
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.83
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.83
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.83
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.83
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.83
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.83
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.83
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.83
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.83
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.83
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.83
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.83
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.83
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.82
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.82
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.82
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.82
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.82
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.82
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.82
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.82
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.82
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.81
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.81
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.81
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.81
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.69
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.8
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.8
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.8
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.8
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.8
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.8
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.79
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.79
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.79
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.79
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.79
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.79
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.79
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.78
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.78
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.78
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.78
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.77
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.77
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.77
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.76
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.75
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.73
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.73
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.73
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.72
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.72
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.71
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.71
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.7
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.7
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.7
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.69
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.69
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.69
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.69
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.68
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.68
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.68
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.68
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.65
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.65
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.65
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.64
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.63
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.63
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.62
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.61
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.6
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.59
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.58
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.57
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.54
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.52
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.47
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.44
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.42
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	99.38
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.38
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	99.26
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.11
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	99.09
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	99.0
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.97
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	98.95
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.93
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	98.92
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.89
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.86
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	98.84
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.82
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.8
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	98.77
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	98.72
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	98.72
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.71
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.7
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.56
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.55
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.55
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	98.47
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	98.4
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.33
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.31
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	98.23
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.17
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.15
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.15
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	98.08
2xxa_A	433	Signal recognition particle protein; protein trans	98.06
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	98.04
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.0
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.97
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.92
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.87
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.84
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.74
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	97.72
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.58
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	97.26
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.25
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.18
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.13
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.13
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	97.11
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.07
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.06
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.02
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.01
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	96.96
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	96.93
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	96.93
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	96.92
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	96.91
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	96.87
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	96.81
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	96.81
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.8
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	96.8
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	96.79
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	96.79
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	96.78
1b0u_A	262	Histidine permease; ABC transporter, transport pro	96.78
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	96.77
1g6h_A	257	High-affinity branched-chain amino acid transport	96.77
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	96.77
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	96.76
1sgw_A	214	Putative ABC transporter; structural genomics, P p	96.75
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	96.75
1ji0_A	240	ABC transporter; ATP binding protein, structural g	96.73
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.72
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.72
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	96.71
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	96.71
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	96.7
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	96.7
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	96.7
2ghi_A	260	Transport protein; multidrug resistance protein, M	96.7
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	96.7
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	96.68
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.68
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.67
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	96.65
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	96.64
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.64
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.63
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.63
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	96.61
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	96.59
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.57
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	96.56
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.55
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	96.53
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.52
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	96.52
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.51
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.5
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.5
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.49
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.44
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.44
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.44
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.43
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.41
3cwq_A	209	Para family chromosome partitioning protein; alpha	96.41
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.4
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	96.37
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.37
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.36
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.36
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.36
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.35
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.34
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.34
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.34
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	96.32
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.31
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.31
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.3
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	96.3
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	96.29
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.28
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	96.27
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.27
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.26
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.26
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.26
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.25
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.24
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.24
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.22
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.22
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.2
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.2
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.19
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	96.18
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.17
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.15
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.14
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.14
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.13
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.11
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.11
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.1
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.1
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.08
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.07
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.06
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.04
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.04
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.03
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.03
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.03
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.02
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.02
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.01
3end_A	307	Light-independent protochlorophyllide reductase ir	95.96
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	95.94
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	95.94
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	95.93
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	95.92
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	95.92
2og2_A	359	Putative signal recognition particle receptor; nuc	95.92
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	95.91
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	95.89
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	95.86
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	95.86
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	95.83
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	95.82
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	95.82
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	95.81
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	95.8
3kta_A	182	Chromosome segregation protein SMC; structural mai	95.8
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	95.8
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	95.79
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	95.77
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	95.77
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	95.76
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	95.76
1via_A	175	Shikimate kinase; structural genomics, transferase	95.73
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	95.72
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	95.71
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	95.69
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.68
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	95.68
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	95.67
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	95.67
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	95.66
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	95.65
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	95.65
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	95.64
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	95.62
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	95.62
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	95.62
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	95.61
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	95.61
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.6
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	95.59
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	95.59
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	95.57
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	95.57
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	95.56
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	95.55
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	95.54
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	95.54
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	95.52
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	95.51
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.51
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	95.49
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	95.48
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	95.48
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.45
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	95.45
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	95.44
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	95.44
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.43
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	95.43
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	95.42
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	95.42
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	95.42
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	95.41
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	95.41
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	95.39
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	95.38
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.35
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	95.35
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	95.35
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	95.33
2vli_A	183	Antibiotic resistance protein; transferase, tunica	95.32
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	95.31
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	95.31
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	95.29
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	95.29
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	95.26
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.26
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	95.22
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	95.21
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	95.2
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	95.18
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.16
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	95.14
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	95.14
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	95.13
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	95.12
2cvh_A	220	DNA repair and recombination protein RADB; filamen	95.1
3pvs_A	447	Replication-associated recombination protein A; ma	95.08
3bos_A	242	Putative DNA replication factor; P-loop containing	95.08
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	95.06
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.03
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	95.02
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	94.96
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	94.95
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	94.91
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	94.86
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	94.83
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	94.82
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	94.8
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	94.77
1tue_A	212	Replication protein E1; helicase, replication, E1E	94.72
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	94.71
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	94.7
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	94.68
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	94.67
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	94.66
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	94.63
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	94.61
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	94.58
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	94.57
2chg_A	226	Replication factor C small subunit; DNA-binding pr	94.57
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	94.55
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	94.46
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	94.46
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	94.46
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	94.4
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	94.38
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	94.38
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	94.34
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	94.33
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	94.33
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	94.31
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	94.22
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	94.19
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	94.17
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	94.16
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	94.13
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	94.08
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	94.05
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	94.05
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	94.04
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	94.02
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	94.02
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	93.99

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.96  E-value=1e-28  Score=203.55  Aligned_cols=181  Identities=32%  Similarity=0.486  Sum_probs=145.8

Q ss_pred             CCCCCCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeC----CcEEEEcCCCCCCcchhHHHHHHH
Q 024325           86 SFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG----TKLCLVDLPGYGFAYAKEEVKDAW  161 (269)
Q Consensus        86 ~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~----~~~~lvDtpG~~~~~~~~~~~~~~  161 (269)
                      ..+....++|+++|.+|+|||||+|+|++......+++.+++|.+..+....    ..+.+|||||+..........+.|
T Consensus        23 ~~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~  102 (223)
T 4dhe_A           23 DLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHW  102 (223)
T ss_dssp             GSCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHH
T ss_pred             hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHH
Confidence            3444567899999999999999999999984356889999999998766544    789999999987764444445667


Q ss_pred             HHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhc----CC
Q 024325          162 EELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN----NS  237 (269)
Q Consensus       162 ~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~----~~  237 (269)
                      ..+...|+.....+|++++|+|+..++...+..++..+...++|+++|+||+|+....+.......+.+.+...    ..
T Consensus       103 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~  182 (223)
T 4dhe_A          103 EQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYA  182 (223)
T ss_dssp             HHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccC
Confidence            77888888888889999999999988887788888888888999999999999998766655555555544432    12


Q ss_pred             CCCCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325          238 LVQPVMMVSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       238 ~~~~vi~vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      ...+++++||++|.|+++|+++|.+.+..
T Consensus       183 ~~~~~~~~SA~~g~gv~~l~~~l~~~~~~  211 (223)
T 4dhe_A          183 GKLTVQLFSALKRTGLDDAHALIESWLRP  211 (223)
T ss_dssp             SCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred             CCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence            35789999999999999999999987754

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.96  E-value=5.6e-28  Score=194.44  Aligned_cols=179  Identities=34%  Similarity=0.555  Sum_probs=146.4

Q ss_pred             cCCCCCCCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHH
Q 024325           84 SSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEE  163 (269)
Q Consensus        84 ~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~  163 (269)
                      ....+....++|+++|.+|+|||||+|+|++. .....++.+++|.+..+...+..+.+|||||+..........+.+..
T Consensus        15 ~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   93 (195)
T 3pqc_A           15 PGDYPPPLKGEVAFVGRSNVGKSSLLNALFNR-KIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKR   93 (195)
T ss_dssp             TTCCCCCTTCEEEEEEBTTSSHHHHHHHHHTS-CCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHH
T ss_pred             hhhCCCCCCeEEEEECCCCCCHHHHHHHHHcC-ccccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHH
Confidence            34455566789999999999999999999998 46778888999999888877889999999998765444444556677


Q ss_pred             HHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeE
Q 024325          164 LVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM  243 (269)
Q Consensus       164 ~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi  243 (269)
                      +...|+.....+|++++|+|+.......+..++.++...+.|+++|+||+|+.++.+.....+.+.+.....  ...+++
T Consensus        94 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~  171 (195)
T 3pqc_A           94 LVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKY--GEYTII  171 (195)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSS--CCSCEE
T ss_pred             HHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhc--CCCceE
Confidence            778888887778999999999877777777888888888999999999999998776666666665555432  246899


Q ss_pred             EeeCCCCCCHHHHHHHHHHhhh
Q 024325          244 MVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       244 ~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      ++||++|.|+++++++|.+.+.
T Consensus       172 ~~Sa~~~~gv~~l~~~l~~~l~  193 (195)
T 3pqc_A          172 PTSSVTGEGISELLDLISTLLK  193 (195)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHC
T ss_pred             EEecCCCCCHHHHHHHHHHHhh
Confidence            9999999999999999998775

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.96  E-value=7.9e-28  Score=193.96  Aligned_cols=178  Identities=33%  Similarity=0.557  Sum_probs=132.6

Q ss_pred             CCCCCCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHH
Q 024325           86 SFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (269)
Q Consensus        86 ~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~  165 (269)
                      ..+....++|+++|.+|+|||||+|+|++......+++.+++|.+..+...+..+.+|||||++.........+.+..+.
T Consensus        17 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   96 (195)
T 1svi_A           17 QYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVSKSEREAWGRMI   96 (195)
T ss_dssp             GSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTTEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred             hCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECCcEEEEECCCCCccccCHHHHHHHHHHH
Confidence            34445678999999999999999999998732456778889999888777778899999999876544444445566777


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEe
Q 024325          166 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV  245 (269)
Q Consensus       166 ~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v  245 (269)
                      ..|+.....+|++++|+|+..+....+..++.++...+.|+++|+||+|+.+..+.......+.+.+..  ....+++++
T Consensus        97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  174 (195)
T 1svi_A           97 ETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNI--DPEDELILF  174 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTC--CTTSEEEEC
T ss_pred             HHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChHHHHHHHHHHHHHHcc--cCCCceEEE
Confidence            777777666799999999988777777778888888889999999999999876665555555543321  225689999


Q ss_pred             eCCCCCCHHHHHHHHHHhhh
Q 024325          246 SSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       246 Sa~~g~gi~~L~~~i~~~~~  265 (269)
                      ||++|.|+++++++|.+.++
T Consensus       175 Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          175 SSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             CTTTCTTHHHHHHHHHHHHT
T ss_pred             EccCCCCHHHHHHHHHHHhc
Confidence            99999999999999988764

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.96  E-value=6.3e-29  Score=226.26  Aligned_cols=236  Identities=20%  Similarity=0.188  Sum_probs=133.8

Q ss_pred             hhhhhhhhcCCCchhhHHHHHhcCCCcceeeeeccccccccCCCCCCCCCCChhhhhhhhhhhhchhhhHHHhhhccCCC
Q 024325            8 SKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSF   87 (269)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   87 (269)
                      +..|+..+++...+.+......|  +.+++...+ .+|+.+|||+|++++............+..............+..
T Consensus       154 t~~~~~~a~~~l~G~ls~~i~~l--r~~L~~~~a-~iea~iDf~eedi~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~  230 (476)
T 3gee_A          154 TESAYRTAVSQMKGDLSVRLGGL--REQLIRSCA-LIELELDFSEEDVEFQSRDELTMQIETLRSEVNRLIDSYQHGRIV  230 (476)
T ss_dssp             SHHHHHHHHHHHHTHHHHHHHHH--HTHHHHHHH-TTTTCSSCCSSCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhhCCcHHHHHHHH--HHHHHHHHH-HhheecCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Confidence            44455556666666677777777  556777666 899999999988776544332222222221111122111111000


Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE---EEeCCcEEEEcCCCCCCcchhHHHHHHHHH-
Q 024325           88 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEE-  163 (269)
Q Consensus        88 ~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~---~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~-  163 (269)
                        ...++|+++|+||+|||||+|+|++. ..+++++++|||++...   ...+..+.+|||||+....      ..+.. 
T Consensus       231 --r~~~kV~ivG~~nvGKSSLln~L~~~-~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~------~~ve~~  301 (476)
T 3gee_A          231 --SEGVSTVIAGKPNAGKSTLLNTLLGQ-ERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAG------EEIEHE  301 (476)
T ss_dssp             --HHCEEEEEECCTTSSHHHHHHHCC-------------------CEEEEETTEEEEEEC--------------------
T ss_pred             --cCCCEEEEECCCCCCHHHHHHHHhCC-CCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcch------hHHHHH
Confidence              13468999999999999999999998 55789999999999743   2346789999999986521      11111 


Q ss_pred             HHHHHHhcccccceEEEEEeCCCCCCc----chHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCC
Q 024325          164 LVKEYVSTRVSLKRVCLLIDTKWGVKP----RDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLV  239 (269)
Q Consensus       164 ~~~~~~~~~~~~d~vl~vid~~~~~~~----~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  239 (269)
                      .+.........+|++++|+|++.+...    ....++..+.  ++|+++|+||+|+........  +.+.+. .     .
T Consensus       302 gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~~~--~~l~~~-~-----~  371 (476)
T 3gee_A          302 GIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADALI--RAIADG-T-----G  371 (476)
T ss_dssp             ------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHHHH--HHHHHH-H-----T
T ss_pred             HHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccchhH--HHHHhc-C-----C
Confidence            123344556679999999999977665    3334444433  689999999999987654422  222221 0     2


Q ss_pred             CCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          240 QPVMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       240 ~~vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      .+++++||++|+|+++|+++|.+.+.
T Consensus       372 ~~~i~vSAktg~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          372 TEVIGISALNGDGIDTLKQHMGDLVK  397 (476)
T ss_dssp             SCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred             CceEEEEECCCCCHHHHHHHHHHHHh
Confidence            68999999999999999999988775

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.94  E-value=1.2e-25  Score=194.51  Aligned_cols=167  Identities=23%  Similarity=0.286  Sum_probs=126.2

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE---Ee-CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~---~~-~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      ...|+++|.+|||||||+|+|++. ....+++.+++|++....   .. +..+.+|||||+..........+.+......
T Consensus        10 ~g~v~ivG~~nvGKSTLin~l~g~-~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~   88 (308)
T 3iev_A           10 VGYVAIVGKPNVGKSTLLNNLLGT-KVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQ   88 (308)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTS-CCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCC-CccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHH
Confidence            457999999999999999999998 677789999999886432   23 6679999999997653222233222222233


Q ss_pred             HHhcccccceEEEEEeCCCCCCcchHHH-HHHHHhhCCcEEEEEecCCCC-CchHHHHHHHHHHHHHHhcCCCCCCeEEe
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRDHEL-ISLMERSQTKYQVVLTKTDTV-FPIDVARRAMQIEESLKANNSLVQPVMMV  245 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~~~~-~~~l~~~~~p~iiv~NK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~vi~v  245 (269)
                         ....+|++++|+|++.+....+..+ ++.+...+.|+++|+||+|+. +..........+.+.+    ....+++++
T Consensus        89 ---~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~----~~~~~i~~v  161 (308)
T 3iev_A           89 ---SLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKH----PELTEIVPI  161 (308)
T ss_dssp             ---HHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHC----TTCCCEEEC
T ss_pred             ---HhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhc----cCCCeEEEE
Confidence               3334999999999998777777776 777877889999999999998 5555554444444332    124789999


Q ss_pred             eCCCCCCHHHHHHHHHHhhhh
Q 024325          246 SSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       246 Sa~~g~gi~~L~~~i~~~~~~  266 (269)
                      ||++|.|+++|+++|.+.+..
T Consensus       162 SA~~g~gv~~L~~~l~~~l~~  182 (308)
T 3iev_A          162 SALKGANLDELVKTILKYLPE  182 (308)
T ss_dssp             BTTTTBSHHHHHHHHHHHSCB
T ss_pred             eCCCCCCHHHHHHHHHHhCcc
Confidence            999999999999999987743

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.93  E-value=3.2e-27  Score=214.26  Aligned_cols=234  Identities=21%  Similarity=0.218  Sum_probs=144.8

Q ss_pred             hhhhhhhcCCCchhhHHHHHhcCCCcceeeeeccccccccCCCCCCCCCCChhhhhhhhhhhhchhhhHHHhhhccCCCC
Q 024325            9 KNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFP   88 (269)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~   88 (269)
                      ..|+-.+++...+.+......|  +.+++.... .+|+.+||++ ++++......+.....+................. 
T Consensus       147 ~~~~~~a~~~l~g~~~~~~~~~--r~~l~~~~a-~iEa~iDf~e-d~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~-  221 (462)
T 3geh_A          147 PQAAQTALAGLQGKLAHPIRQL--RANCLDILA-EIEARIDFEE-DLPPLDDEAIISDIENIAAEISQLLATKDKGELL-  221 (462)
T ss_dssp             HHHHHHHHHHHHTTTHHHHHHH--HHHHHHHHH-HHHHHTTSSS-SSCCCCTTTHHHHHHHHHHHHHHHTTTHHHHHHH-
T ss_pred             HHHHHHHHHHhchhHHHHHHHH--HHHHHHHHH-HHHhhccccc-cCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhhh-
Confidence            3444455555556666666666  556666666 7889999987 5555443221111111111111111111000000 


Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEEeCCcEEEEcCCCCCCcchhHHHHHHHHH-H
Q 024325           89 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEE-L  164 (269)
Q Consensus        89 ~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~-~  164 (269)
                       ...++|+++|+||+|||||+|+|++. ...++++.++||++..   ....+..+.+|||||+.+...      .+.. .
T Consensus       222 -r~~~kV~ivG~~nvGKSSLln~L~~~-~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~------~ve~~g  293 (462)
T 3geh_A          222 -RTGLKVAIVGRPNVGKSSLLNAWSQS-DRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSD------QVEKIG  293 (462)
T ss_dssp             -HHCEEEEEEECTTSSHHHHHHHHHHH-HBSCCSCCTTCCHHHHHHEEEETTEEEEECC---------------------
T ss_pred             -cCCCEEEEEcCCCCCHHHHHHHHhCC-CcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchh------HHHHHH
Confidence             12468999999999999999999997 5577899999999873   333477899999999855311      1111 1


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEE
Q 024325          165 VKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM  244 (269)
Q Consensus       165 ~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~  244 (269)
                      +.........+|++++|+|++.+....+..+++.+.  ..|+++|+||+|+.+......        ...+ ....++++
T Consensus       294 i~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~--~~piivV~NK~Dl~~~~~~~~--------~~~~-~~~~~~i~  362 (462)
T 3geh_A          294 VERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVK--HRPLILVMNKIDLVEKQLITS--------LEYP-ENITQIVH  362 (462)
T ss_dssp             -----CCCCSCSEEEEEEETTTCSCHHHHHHHHHHT--TSCEEEEEECTTSSCGGGSTT--------CCCC-TTCCCEEE
T ss_pred             HHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhcc--CCcEEEEEECCCCCcchhhHH--------HHHh-ccCCcEEE
Confidence            233445566799999999999877777767766664  379999999999987643220        0000 12468999


Q ss_pred             eeCCCCCCHHHHHHHHHHhhhh
Q 024325          245 VSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       245 vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      +||++|.|+++|+++|.+.+..
T Consensus       363 iSAktg~Gi~eL~~~i~~~~~~  384 (462)
T 3geh_A          363 TAAAQKQGIDSLETAILEIVQT  384 (462)
T ss_dssp             EBTTTTBSHHHHHHHHHHHHTT
T ss_pred             EECCCCCCHHHHHHHHHHHHhc
Confidence            9999999999999999988754

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.93  E-value=5.4e-27  Score=213.70  Aligned_cols=155  Identities=22%  Similarity=0.336  Sum_probs=113.7

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE---EeCCcEEEEcCCCCC-Ccchh---HHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYG-FAYAK---EEVKDAWEEL  164 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~---~~~~~~~lvDtpG~~-~~~~~---~~~~~~~~~~  164 (269)
                      .++|+++|+||+|||||+|+|++. ...+++++|+||+|....   ..+..+.+|||||+. .....   ..+...+..+
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~-~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~  321 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNE-DRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEI  321 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHH-TBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCC-CCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence            468999999999999999999998 557899999999987422   246789999999997 43211   1111222221


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEE
Q 024325          165 VKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM  244 (269)
Q Consensus       165 ~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~  244 (269)
                              ..+|++++|+|++.+....+.++++.+  .++|+++|+||+|+.......    .+.+..    ....++++
T Consensus       322 --------~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL~~~~~~~----~~~~~~----~~~~~~i~  383 (482)
T 1xzp_A          322 --------EKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVEKINEE----EIKNKL----GTDRHMVK  383 (482)
T ss_dssp             --------HHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCCCCCHH----HHHHHH----TCSTTEEE
T ss_pred             --------hcccEEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEECcccccccCHH----HHHHHh----cCCCcEEE
Confidence                    229999999999877666666666655  378999999999997642222    122211    12368999


Q ss_pred             eeCCCCCCHHHHHHHHHHhhh
Q 024325          245 VSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       245 vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      +||++|+|+++|+++|.+.+.
T Consensus       384 iSAktg~Gi~eL~~~l~~~~~  404 (482)
T 1xzp_A          384 ISALKGEGLEKLEESIYRETQ  404 (482)
T ss_dssp             EEGGGTCCHHHHHHHHHHHTH
T ss_pred             EECCCCCCHHHHHHHHHHHHh
Confidence            999999999999999988643

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.93  E-value=2.8e-25  Score=196.08  Aligned_cols=238  Identities=18%  Similarity=0.119  Sum_probs=126.1

Q ss_pred             hcCCCchhhHHHHHhcCCCcceeeeeccccccccCCCCCCCCCCChhhhhhhhhhhhchhhhHHHhh----hccCCCCCC
Q 024325           15 AIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAA----KVSSSFPAP   90 (269)
Q Consensus        15 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~----~~~~~~~~~   90 (269)
                      ++|++.+.+.|..++| +.|..+....  .+++..+|++.   ..+.+++.+..++.....++....    ..+..+.+.
T Consensus       104 ~~q~~la~l~~~~~rl-~~~~~l~~~~--~~i~~~g~ge~---~~e~~~~~~~~~i~~l~~~l~~~~~~r~~~r~~r~~~  177 (364)
T 2qtf_A          104 KMQIELARLKYELPII-KETYTKSKIG--EQQGPLGAGTY---GVESTIKFYKRRINKLMKELESIKIFKEKSIESNKRN  177 (364)
T ss_dssp             HHHHHHHHHHHHHHHH-HHC--------------------------CHHHHHHHHHHHHHHHHHHHHC------------
T ss_pred             hHHHHHHHHhhhchhh-hhhhHHHHhc--CCCCcCCcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence            4799999999999999 6664433333  33334445543   223335556665543332222211    122233345


Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE---EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~---~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      +.+.|+++|++|||||||+|+|++..  ..+++.+++|.|....   ..+..+.++||||+......+.+ +.+..    
T Consensus       178 ~~~~V~lvG~~naGKSTLln~L~~~~--~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lv-e~f~~----  250 (364)
T 2qtf_A          178 NIPSIGIVGYTNSGKTSLFNSLTGLT--QKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIV-DAFFV----  250 (364)
T ss_dssp             -CCEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGH-HHHHH----
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCC--ccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHH-HHHHH----
Confidence            66779999999999999999999983  4678888999876332   23567899999997543222211 12222    


Q ss_pred             HHhcccccceEEEEEeCCCCCCcch---HHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCC
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRD---HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP  241 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~---~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (269)
                      .......+|++++|+|++++.....   ..+.+.+..   .+.|+++|+||+|+.+... ......+............+
T Consensus       251 tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~l~~~l~~~~~~  329 (364)
T 2qtf_A          251 TLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDL-YKKLDLVEKLSKELYSPIFD  329 (364)
T ss_dssp             HHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCH-HHHHHHHHHHHHHHCSCEEE
T ss_pred             HHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchH-HHHHHHHHHHHHHhcCCCCc
Confidence            2233455999999999875421111   112333333   4689999999999987541 11111221111211011246


Q ss_pred             eEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325          242 VMMVSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       242 vi~vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      ++++||++|.|+++|+++|.+.+..
T Consensus       330 ~~~~SA~~g~gi~~L~~~I~~~l~~  354 (364)
T 2qtf_A          330 VIPISALKRTNLELLRDKIYQLATQ  354 (364)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHHHhcc
Confidence            8999999999999999999887654

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.93  E-value=5e-25  Score=189.96  Aligned_cols=159  Identities=19%  Similarity=0.195  Sum_probs=120.4

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE---EEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~---~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~  169 (269)
                      ..|+++|.||+|||||+|+|++. ..+.+++.|+||++...   ...+..+.+|||||+..+..  .+.+   .+.....
T Consensus         8 g~V~ivG~~nvGKSTLln~l~g~-~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~--~l~~---~~~~~~~   81 (301)
T 1wf3_A            8 GFVAIVGKPNVGKSTLLNNLLGV-KVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMD--ALGE---FMDQEVY   81 (301)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS-CCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCS--HHHH---HHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC-ceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhh--HHHH---HHHHHHH
Confidence            47999999999999999999998 66778899999987532   22366899999999976422  2222   2333444


Q ss_pred             hcccccceEEEEEeCCCCCCcchHHHHHHHHhh--CCcEEEEEecCCCCCchH-HHHHHHHHHHHHHhcCCCCCCeEEee
Q 024325          170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDTVFPID-VARRAMQIEESLKANNSLVQPVMMVS  246 (269)
Q Consensus       170 ~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~--~~p~iiv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~vi~vS  246 (269)
                      .....+|++++|+|++.++...+..+++.+...  +.|+++|+||+|+..... ...   .+.    .+ ....+++++|
T Consensus        82 ~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~---~~~----~~-~~~~~~~~iS  153 (301)
T 1wf3_A           82 EALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEEAMK---AYH----EL-LPEAEPRMLS  153 (301)
T ss_dssp             HHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHH---HHH----HT-STTSEEEECC
T ss_pred             HHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHHHHH---HHH----Hh-cCcCcEEEEe
Confidence            455669999999999887777777777778776  899999999999987644 222   111    11 1235789999


Q ss_pred             CCCCCCHHHHHHHHHHhhh
Q 024325          247 SKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       247 a~~g~gi~~L~~~i~~~~~  265 (269)
                      |++|.|+++|+++|.+.+.
T Consensus       154 A~~g~gv~~l~~~l~~~l~  172 (301)
T 1wf3_A          154 ALDERQVAELKADLLALMP  172 (301)
T ss_dssp             TTCHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHHHHhcc
Confidence            9999999999999987653

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.91  E-value=6e-25  Score=185.31  Aligned_cols=160  Identities=22%  Similarity=0.197  Sum_probs=113.7

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE---EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~---~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~  169 (269)
                      |+|+++|.+|+|||||+|+|++..  ..+++.||+|.+....   ..+..+.+|||||+...............+...|+
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~--~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNAN--QRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTS--EEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC--CCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            689999999999999999999984  6788999999876433   23567999999998654321000011123344444


Q ss_pred             hcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCC
Q 024325          170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS  249 (269)
Q Consensus       170 ~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~  249 (269)
                      .. ..+|++++|+|++.  ......+..++...++|+++|+||+|+............+.+.+      +.|++++||++
T Consensus        80 ~~-~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~l------g~~vi~~SA~~  150 (256)
T 3iby_A           80 ID-LEYDCIINVIDACH--LERHLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKLESLL------GCSVIPIQAHK  150 (256)
T ss_dssp             HH-SCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHHHHH------CSCEEECBGGG
T ss_pred             hh-CCCCEEEEEeeCCC--chhHHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHHHHc------CCCEEEEECCC
Confidence            22 34999999999975  23345666777777899999999999864432211122233322      47999999999


Q ss_pred             CCCHHHHHHHHHHh
Q 024325          250 GAGIRSLRTVLSKI  263 (269)
Q Consensus       250 g~gi~~L~~~i~~~  263 (269)
                      |.|+++|+++|.+.
T Consensus       151 g~gi~el~~~i~~~  164 (256)
T 3iby_A          151 NIGIPALQQSLLHC  164 (256)
T ss_dssp             TBSHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHhh
Confidence            99999999999875

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.91  E-value=8.3e-24  Score=164.78  Aligned_cols=156  Identities=21%  Similarity=0.192  Sum_probs=105.2

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~  169 (269)
                      ++|+++|.+|+|||||+|+|++. ....+++.+++|.+.....   .+..+.+|||||........      ..+.....
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~------~~~~~~~~   74 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKK-RSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWE------KKIQEKVD   74 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHC-CC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCC------HHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC-CeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchH------HHHHHHHH
Confidence            68999999999999999999988 4455677888887764332   35679999999986531100      11112222


Q ss_pred             hcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCC
Q 024325          170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS  249 (269)
Q Consensus       170 ~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~  249 (269)
                      .....+|++++|+|+..+....+..+..++...+.|+++|+||+|+....+.      +.+.. ..  ...+++++||++
T Consensus        75 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~------~~~~~-~~--~~~~~~~~Sa~~  145 (161)
T 2dyk_A           75 RALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHELY------LGPLY-GL--GFGDPIPTSSEH  145 (161)
T ss_dssp             HHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGGGG------CGGGG-GG--SSCSCEECBTTT
T ss_pred             HHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccchHh------HHHHH-hC--CCCCeEEEeccc
Confidence            3344599999999998877777777778887788999999999999765211      11111 11  123789999999


Q ss_pred             CCCHHHHHHHHHHhh
Q 024325          250 GAGIRSLRTVLSKIA  264 (269)
Q Consensus       250 g~gi~~L~~~i~~~~  264 (269)
                      |.|+++++++|.+.+
T Consensus       146 ~~gv~~l~~~l~~~l  160 (161)
T 2dyk_A          146 ARGLEELLEAIWERL  160 (161)
T ss_dssp             TBSHHHHHHHHHHHC
T ss_pred             CCChHHHHHHHHHhC
Confidence            999999999998765

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.90  E-value=3.4e-23  Score=171.45  Aligned_cols=170  Identities=16%  Similarity=0.145  Sum_probs=107.8

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      ...++|+++|.+|+|||||+|+|++. .. .+++.+++|.+.....   .+..+.+|||||+......+.....+..+ .
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~-~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~-~  103 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRA-NV-DVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTI-T  103 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTT-CE-EEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHH-H
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC-CC-ccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHH-H
Confidence            45689999999999999999999998 33 3677888888876543   35679999999985432111100001111 1


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcc---hHHHHHHHHhh--CCcEEEEEecCCCCCchHHHHH-HHHHHHHHHhcCCCCC
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPR---DHELISLMERS--QTKYQVVLTKTDTVFPIDVARR-AMQIEESLKANNSLVQ  240 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~---~~~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~~-~~~~~~~~~~~~~~~~  240 (269)
                      .+   ...+|++++|+|++......   ...++..+...  +.|+++|+||+|+......... ...+....... ....
T Consensus       104 ~~---~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~  179 (228)
T 2qu8_A          104 AL---AHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNV-KNPI  179 (228)
T ss_dssp             HH---HTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHC-CSCE
T ss_pred             Hh---hccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhc-CCCc
Confidence            22   23479999999998654432   23455556554  7899999999999865333221 11222222221 1126


Q ss_pred             CeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325          241 PVMMVSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       241 ~vi~vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      +++++||++|.|+++++++|.+.+..
T Consensus       180 ~~~~~SA~~g~gi~~l~~~l~~~i~~  205 (228)
T 2qu8_A          180 KFSSFSTLTGVGVEQAKITACELLKN  205 (228)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             eEEEEecccCCCHHHHHHHHHHHHHH
Confidence            79999999999999999999887643

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.90  E-value=1e-24  Score=185.71  Aligned_cols=163  Identities=20%  Similarity=0.207  Sum_probs=114.6

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE---EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~---~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      .++|+++|.+|+|||||+|+|++..  ..+++.||+|.+....   ..+..+.+|||||+...............+...|
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~~--~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~   80 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGSR--QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTTC--EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCC--cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHH
Confidence            3689999999999999999999984  6789999999886433   2367899999999865421100000111222333


Q ss_pred             HhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCC
Q 024325          169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSK  248 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~  248 (269)
                      .. ...+|++++|+|++.  ......+..++...++|+++|+||+|+............+.+.+      +.|++++||+
T Consensus        81 ~~-~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l------g~~~i~~SA~  151 (274)
T 3i8s_A           81 IL-SGDADLLINVVDASN--LERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARL------GCPVIPLVST  151 (274)
T ss_dssp             HH-HTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHHHHHH------TSCEEECCCG
T ss_pred             Hh-hcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHHhc------CCCEEEEEcC
Confidence            32 234999999999875  23445666777778999999999999864322111122233222      4789999999


Q ss_pred             CCCCHHHHHHHHHHhhh
Q 024325          249 SGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       249 ~g~gi~~L~~~i~~~~~  265 (269)
                      +|.|+++|+++|.+.+.
T Consensus       152 ~g~gi~el~~~i~~~~~  168 (274)
T 3i8s_A          152 RGRGIEALKLAIDRYKA  168 (274)
T ss_dssp             GGHHHHHHHHHHHTCCC
T ss_pred             CCCCHHHHHHHHHHHHh
Confidence            99999999999988654

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.90  E-value=1.7e-23  Score=189.49  Aligned_cols=160  Identities=20%  Similarity=0.257  Sum_probs=105.5

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~  169 (269)
                      |+|+++|.||+|||||+|+|++. ..+.+++.||+|+|.....   .+..+.+|||||+.... .+.+..........+ 
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~-~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~-~~~~~~~~~~~~~~~-   78 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKK-KKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNP-QDIISQKMKEVTLNM-   78 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEECTTTTSSG-GGCCCHHHHHHHHHH-
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC-CCceecCCCCCccceeeEEEEECCeEEEEEECCCccccc-cchHHHHHHHHHHHH-
Confidence            68999999999999999999998 5677899999999975433   36679999999986421 111111112222233 


Q ss_pred             hcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHH-HHHHHhcCCCCCCeEEeeCC
Q 024325          170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQI-EESLKANNSLVQPVMMVSSK  248 (269)
Q Consensus       170 ~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~~vi~vSa~  248 (269)
                        ...+|++++|+|+..+++..+..+.+++...++|+++|+||+|+...  ..   ... .+ +...  ...+++++||+
T Consensus        79 --~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~--~~---~~~~~~-~~~l--g~~~~~~iSA~  148 (439)
T 1mky_A           79 --IREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLRE--FE---REVKPE-LYSL--GFGEPIPVSAE  148 (439)
T ss_dssp             --HTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHH--HH---HHTHHH-HGGG--SSCSCEECBTT
T ss_pred             --HHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccc--cH---HHHHHH-HHhc--CCCCEEEEecc
Confidence              34499999999999888888888888888889999999999998532  11   111 11 1111  12367999999


Q ss_pred             CCCCHHHHHHHHHHhhh
Q 024325          249 SGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       249 ~g~gi~~L~~~i~~~~~  265 (269)
                      +|.|+++|+++|.+.+.
T Consensus       149 ~g~gv~~L~~~i~~~l~  165 (439)
T 1mky_A          149 HNINLDTMLETIIKKLE  165 (439)
T ss_dssp             TTBSHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhcc
Confidence            99999999999987764

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.90  E-value=5.5e-24  Score=192.62  Aligned_cols=171  Identities=20%  Similarity=0.253  Sum_probs=115.4

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEEeCCcEEEEcCCCCCCcchh-HHHHHHHHHHH
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAK-EEVKDAWEELV  165 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~~~~~~~lvDtpG~~~~~~~-~~~~~~~~~~~  165 (269)
                      ...++|+++|.+|+|||||+|+|++. ....+++++|||++..   +...+..+.+|||||+...... +.+ +.+..+.
T Consensus       173 ~~~~ki~lvG~~nvGKSSLin~l~~~-~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~-e~~~~~~  250 (436)
T 2hjg_A          173 EEVIQFCLIGRPNVGKSSLVNAMLGE-ERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETT-EKYSVLR  250 (436)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTS-TTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCC-SHHHHHH
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCC-CceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchH-HHHHHHH
Confidence            34689999999999999999999998 4567899999999873   3334667999999998542110 000 1111110


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchH--HHHHHHHHHHHHHhcCCCCCCeE
Q 024325          166 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID--VARRAMQIEESLKANNSLVQPVM  243 (269)
Q Consensus       166 ~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~vi  243 (269)
                        .......+|++++|+|+..+...++..++..+...+.|+++|+||+|+.+...  ..+..+.+.+.+...  ...|++
T Consensus       251 --~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~--~~~~~~  326 (436)
T 2hjg_A          251 --ALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFL--DYAPIL  326 (436)
T ss_dssp             --HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGG--TTSCEE
T ss_pred             --HHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccC--CCCCEE
Confidence              11112238999999999998888888888888888999999999999986543  223333333333221  257899


Q ss_pred             EeeCCCCCCHHHHHHHHHHhhhh
Q 024325          244 MVSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       244 ~vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      ++||++|.|+++|++.|.+.+..
T Consensus       327 ~~SA~tg~~v~~l~~~i~~~~~~  349 (436)
T 2hjg_A          327 FMSALTKKRIHTLMPAIIKASEN  349 (436)
T ss_dssp             ECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             EEecccCCCHHHHHHHHHHHHHH
Confidence            99999999999999999887653

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.90  E-value=2.4e-22  Score=160.86  Aligned_cols=169  Identities=25%  Similarity=0.411  Sum_probs=114.6

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhH-HHHHHHHHHHHHHHhc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKE-EVKDAWEELVKEYVST  171 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~-~~~~~~~~~~~~~~~~  171 (269)
                      ++|+++|.+|+|||||+|+|++..  ..++..|++|.+......+ .+.+|||||+......+ ...+.+..+...|+..
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~~~t~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~   78 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKK--VRRGKRPGVTRKIIEIEWK-NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIED   78 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCC--CSSSSSTTCTTSCEEEEET-TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcC--CccCCCCCccceeEEEecC-CEEEEECCCccccccCCHHHHHHHHHHHHHHHHh
Confidence            589999999999999999999873  4567778888777665545 79999999975432211 1123344555556655


Q ss_pred             -ccccceEEEEEeCCCC-----------CCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhc-CCC
Q 024325          172 -RVSLKRVCLLIDTKWG-----------VKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN-NSL  238 (269)
Q Consensus       172 -~~~~d~vl~vid~~~~-----------~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~  238 (269)
                       ...++++++|+|+...           ....+.+++..+...+.|+++|+||+|+....  ....+.+.+.+... ...
T Consensus        79 ~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~  156 (190)
T 2cxx_A           79 NAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV--QEVINFLAEKFEVPLSEI  156 (190)
T ss_dssp             HGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH--HHHHHHHHHHHTCCGGGH
T ss_pred             hhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH--HHHHHHHHHHhhhhhhcc
Confidence             6668899999997521           11122334455556689999999999998764  22223333222110 000


Q ss_pred             CCCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325          239 VQPVMMVSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       239 ~~~vi~vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      ..+++++||++|.|+++++++|.+.+..
T Consensus       157 ~~~~~~~Sa~~~~~v~~l~~~l~~~~~~  184 (190)
T 2cxx_A          157 DKVFIPISAKFGDNIERLKNRIFEVIRE  184 (190)
T ss_dssp             HHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             CCcEEEEecCCCCCHHHHHHHHHHhcch
Confidence            1257999999999999999999887654

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.90  E-value=1.7e-23  Score=190.44  Aligned_cols=172  Identities=20%  Similarity=0.257  Sum_probs=119.5

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe---eEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~---~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      ...++|+++|.+|+|||||+|+|++. ....+++++|||++.   .+...+..+.+|||||++.........+.+..+  
T Consensus       193 ~~~~ki~ivG~~~vGKSslin~l~~~-~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~--  269 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVNAMLGE-ERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVL--  269 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTS-TTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHH--
T ss_pred             cccceeEEecCCCCCHHHHHHHHhCC-CccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHH--
Confidence            45689999999999999999999987 457889999999986   333446689999999976431110000111111  


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchH--HHHHHHHHHHHHHhcCCCCCCeEE
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID--VARRAMQIEESLKANNSLVQPVMM  244 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~vi~  244 (269)
                      ........+|++++|+|+..++..++..++..+...++|+++|+||+|+.+...  ..+..+.+.+.+...  ...|+++
T Consensus       270 ~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  347 (456)
T 4dcu_A          270 RALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFL--DYAPILF  347 (456)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGG--TTSCEEE
T ss_pred             HHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccC--CCCCEEE
Confidence            111122238999999999998888888999988888999999999999986432  233334444332221  2478999


Q ss_pred             eeCCCCCCHHHHHHHHHHhhhh
Q 024325          245 VSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       245 vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      +||++|.|+++|+++|.+.+..
T Consensus       348 ~SA~~g~gv~~l~~~i~~~~~~  369 (456)
T 4dcu_A          348 MSALTKKRIHTLMPAIIKASEN  369 (456)
T ss_dssp             CCTTTCTTGGGHHHHHHHHHHH
T ss_pred             EcCCCCcCHHHHHHHHHHHHHH
Confidence            9999999999999999887643

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.90  E-value=1.7e-23  Score=165.88  Aligned_cols=157  Identities=23%  Similarity=0.246  Sum_probs=107.9

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE---EEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~---~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      ..+|+++|.+|+|||||+|+|++. ....+++++++|.+...   ...+..+.+|||||+......  ....  . ....
T Consensus         4 ~~ki~ivG~~g~GKStLl~~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~--~-~~~~   77 (172)
T 2gj8_A            4 GMKVVIAGRPNAGKSSLLNALAGR-EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDE--VERI--G-IERA   77 (172)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTS-CCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSH--HHHH--H-HHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC-CcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhH--HHHH--H-HHHH
Confidence            468999999999999999999987 44567888999877532   223557899999998653211  1100  0 1111


Q ss_pred             HhcccccceEEEEEeCCCCCCcchHHHHHHHHhh---CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEe
Q 024325          169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV  245 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~---~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v  245 (269)
                      ......+|++++|+|+.......+..++..+...   ++|+++|+||+|+.....            ........+++++
T Consensus        78 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~------------~~~~~~~~~~~~~  145 (172)
T 2gj8_A           78 WQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETL------------GMSEVNGHALIRL  145 (172)
T ss_dssp             HHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC------------EEEEETTEEEEEC
T ss_pred             HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchh------------hhhhccCCceEEE
Confidence            1122349999999999876655555565555443   589999999999853210            0001124578999


Q ss_pred             eCCCCCCHHHHHHHHHHhhhh
Q 024325          246 SSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       246 Sa~~g~gi~~L~~~i~~~~~~  266 (269)
                      ||++|.|+++|+++|.+.+..
T Consensus       146 SA~~g~gv~~l~~~l~~~~~~  166 (172)
T 2gj8_A          146 SARTGEGVDVLRNHLKQSMGF  166 (172)
T ss_dssp             CTTTCTTHHHHHHHHHHHC--
T ss_pred             eCCCCCCHHHHHHHHHHHhhh
Confidence            999999999999999887653

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.90  E-value=1.9e-23  Score=189.02  Aligned_cols=158  Identities=19%  Similarity=0.283  Sum_probs=101.4

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~  169 (269)
                      ++|+++|.||+|||||+|+|++. ..+.+++.||+|+|..+...   +..+.+|||||+....  ......+......++
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~-~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~--~~~~~~~~~~~~~~~   80 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGE-RISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD--EPFLAQIRQQAEIAM   80 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEE-ECC-----------CEEEECTTCSSCCEEEC-----------CHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC-CceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcc--hhHHHHHHHHHHHHH
Confidence            68999999999999999999998 56788999999999876543   6779999999985321  112222222222333


Q ss_pred             hcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCC
Q 024325          170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS  249 (269)
Q Consensus       170 ~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~  249 (269)
                         ..+|++++|+|+..+.+..+.++.+.+...++|+++|+||+|+.....      .+.+.. ..  ...+++++||++
T Consensus        81 ---~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~------~~~~~~-~l--g~~~~~~iSA~~  148 (436)
T 2hjg_A           81 ---DEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA------NIYDFY-SL--GFGEPYPISGTH  148 (436)
T ss_dssp             ---HHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-----------CCCSSG-GG--SSCCCEECBTTT
T ss_pred             ---HhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchh------hHHHHH-Hc--CCCCeEEEeCcC
Confidence               339999999999988888888888888888899999999999875321      000111 11  123689999999


Q ss_pred             CCCHHHHHHHHHHhhh
Q 024325          250 GAGIRSLRTVLSKIAR  265 (269)
Q Consensus       250 g~gi~~L~~~i~~~~~  265 (269)
                      |.|+++|+++|.+.+.
T Consensus       149 g~gv~~L~~~i~~~l~  164 (436)
T 2hjg_A          149 GLGLGDLLDAVAEHFK  164 (436)
T ss_dssp             TBTHHHHHHHHHHTGG
T ss_pred             CCChHHHHHHHHHhcC
Confidence            9999999999988774

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.89  E-value=5.8e-23  Score=173.39  Aligned_cols=159  Identities=25%  Similarity=0.318  Sum_probs=112.6

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      .++|+++|.+|+|||||+|+|++..  ..+++.||+|.+.....   .+..+.+|||||+....... ..   ..+...|
T Consensus         5 ~~kI~lvG~~nvGKTsL~n~l~g~~--~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~-~~---e~v~~~~   78 (258)
T 3a1s_A            5 MVKVALAGCPNVGKTSLFNALTGTK--QYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSS-ID---EKIARDY   78 (258)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTTC--EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSS-HH---HHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCC--CcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCC-HH---HHHHHHH
Confidence            3689999999999999999999973  45788999998865332   25689999999986532111 00   1233344


Q ss_pred             HhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCC
Q 024325          169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSK  248 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~  248 (269)
                      +.. ..+|++++|+|++..  .....+...+...++|+++|+||+|+............+.+.+      +.|++++||+
T Consensus        79 ~~~-~~~d~ii~V~D~t~~--~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~l------g~~vi~~SA~  149 (258)
T 3a1s_A           79 LLK-GDADLVILVADSVNP--EQSLYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQKHL------GIPVVFTSSV  149 (258)
T ss_dssp             HHH-SCCSEEEEEEETTSC--HHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHHHHHH------CSCEEECCTT
T ss_pred             Hhh-cCCCEEEEEeCCCch--hhHHHHHHHHHhcCCCEEEEEECcCCCCccchHHHHHHHHHHc------CCCEEEEEee
Confidence            432 348999999999752  2334566666777899999999999854322111112222222      4799999999


Q ss_pred             CCCCHHHHHHHHHHhhh
Q 024325          249 SGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       249 ~g~gi~~L~~~i~~~~~  265 (269)
                      +|.|+++|+++|.+.+.
T Consensus       150 ~g~gi~el~~~i~~~~~  166 (258)
T 3a1s_A          150 TGEGLEELKEKIVEYAQ  166 (258)
T ss_dssp             TCTTHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHhh
Confidence            99999999999988764

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.89  E-value=5.8e-23  Score=177.16  Aligned_cols=162  Identities=20%  Similarity=0.235  Sum_probs=116.4

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE---EEeCCcEEEEcCCCCC-CcchhHHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYG-FAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~---~~~~~~~~lvDtpG~~-~~~~~~~~~~~~~~~~~~  167 (269)
                      ...|+++|++|||||||+|+|++. ..+.+++.+++|++...   ...+..+.++||||+. ...  .   .....+...
T Consensus         8 ~~~VaIvG~~nvGKSTLln~L~g~-~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~--~---~l~~~~~~~   81 (301)
T 1ega_A            8 CGFIAIVGRPNVGKSTLLNKLLGQ-KISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEK--R---AINRLMNKA   81 (301)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTC-SEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHH--H---HHHHHHTCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCC-CccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccch--h---hHHHHHHHH
Confidence            357999999999999999999998 66778888999886432   2235679999999985 210  0   011122222


Q ss_pred             HHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCC-chHHHHHHHHHHHHHHhcCCCCCCeEEee
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF-PIDVARRAMQIEESLKANNSLVQPVMMVS  246 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~vi~vS  246 (269)
                      ....+..+|++++|+|+.. +...+..+++.+...+.|+++|+||+|+.. ..........+    ..... ..+++++|
T Consensus        82 ~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l----~~~~~-~~~~i~iS  155 (301)
T 1ega_A           82 ASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFL----ASQMN-FLDIVPIS  155 (301)
T ss_dssp             TTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHH----HTTSC-CSEEEECC
T ss_pred             HHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCccHHHHHHHHHHH----HHhcC-cCceEEEE
Confidence            2345567999999999987 777777777777777899999999999986 33332222222    11111 23689999


Q ss_pred             CCCCCCHHHHHHHHHHhhh
Q 024325          247 SKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       247 a~~g~gi~~L~~~i~~~~~  265 (269)
                      |++|.|+++|++.|...+.
T Consensus       156 A~~g~~v~~l~~~i~~~l~  174 (301)
T 1ega_A          156 AETGLNVDTIAAIVRKHLP  174 (301)
T ss_dssp             TTTTTTHHHHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHHHHhCC
Confidence            9999999999999987653

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.89  E-value=1e-23  Score=167.16  Aligned_cols=162  Identities=19%  Similarity=0.236  Sum_probs=111.5

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      ...++|+++|.+|+|||||+|+|++..  ......+++|.+..   +...+..+.+|||||......             
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------------   70 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRHSK--VTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTT-------------   70 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHTTC--SSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSC-------------
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCc--cccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHH-------------
Confidence            346799999999999999999999873  33444555555542   223466789999999743211             


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcC-CC--CCCeE
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANN-SL--VQPVM  243 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~--~~~vi  243 (269)
                      ........+|++++|+|+..+......+.+..+...+.|+++|+||+|+..... ......+.. ..... ..  ..+++
T Consensus        71 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~  148 (178)
T 2lkc_A           71 MRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEANP-DRVMQELME-YNLVPEEWGGDTIFC  148 (178)
T ss_dssp             SCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSCH-HHHHHHHTT-TTCCBTTTTSSEEEE
T ss_pred             HHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCCH-HHHHHHHHh-cCcChhHcCCcccEE
Confidence            011234458999999999876666666677767667899999999999986421 111111111 00000 01  14799


Q ss_pred             EeeCCCCCCHHHHHHHHHHhhhhhc
Q 024325          244 MVSSKSGAGIRSLRTVLSKIARFAK  268 (269)
Q Consensus       244 ~vSa~~g~gi~~L~~~i~~~~~~~k  268 (269)
                      ++||++|.|+++|+++|.+.+...+
T Consensus       149 ~~Sa~~~~gv~~l~~~l~~~~~~~~  173 (178)
T 2lkc_A          149 KLSAKTKEGLDHLLEMILLVSEMEE  173 (178)
T ss_dssp             ECCSSSSHHHHHHHHHHHHHHHHTT
T ss_pred             EEecCCCCCHHHHHHHHHHhhhhhc
Confidence            9999999999999999998876654

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.89  E-value=4.5e-23  Score=175.20  Aligned_cols=159  Identities=19%  Similarity=0.218  Sum_probs=111.8

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe--CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~  169 (269)
                      .++|+++|.+|+|||||+|+|++..  ..++++||+|.+......  +..+.+|||||........ .   ...+...|+
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~--~~v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~~~~~~~-~---~e~v~~~~~   76 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHN--QRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMSPYS-P---EAKVARDYL   76 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCC--CCCCSSSCCCCSCEEEECTTCTTEEEEECCCCSCSSCSS-H---HHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCC--CcccCCCCCcEEEEEEEEecCCeEEEEECCCcCccCCCC-h---HHHHHHHHH
Confidence            4689999999999999999999973  578999999987643322  5689999999986431111 0   123334444


Q ss_pred             hcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCC
Q 024325          170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS  249 (269)
Q Consensus       170 ~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~  249 (269)
                      .. ..+|++++|+|++..  .....+...+...++|+++|+||+|+............+.+.+      +.|++++||++
T Consensus        77 ~~-~~~d~vi~V~D~t~~--e~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l------g~~vi~~SA~~  147 (272)
T 3b1v_A           77 LS-QRADSILNVVDATNL--ERNLYLTTQLIETGIPVTIALNMIDVLDGQGKKINVDKLSYHL------GVPVVATSALK  147 (272)
T ss_dssp             HT-TCCSEEEEEEEGGGH--HHHHHHHHHHHHTCSCEEEEEECHHHHHHTTCCCCHHHHHHHH------TSCEEECBTTT
T ss_pred             hc-CCCCEEEEEecCCch--HhHHHHHHHHHhcCCCEEEEEEChhhCCcCCcHHHHHHHHHHc------CCCEEEEEccC
Confidence            43 359999999998741  2233455556667899999999999853221111112222222      47899999999


Q ss_pred             CCCHHHHHHHHHHhhh
Q 024325          250 GAGIRSLRTVLSKIAR  265 (269)
Q Consensus       250 g~gi~~L~~~i~~~~~  265 (269)
                      |.|+++|+++|.+.+.
T Consensus       148 g~gi~el~~~i~~~~~  163 (272)
T 3b1v_A          148 QTGVDQVVKKAAHTTT  163 (272)
T ss_dssp             TBSHHHHHHHHHHSCT
T ss_pred             CCCHHHHHHHHHHHHh
Confidence            9999999999988654

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.89  E-value=5.8e-22  Score=161.50  Aligned_cols=179  Identities=37%  Similarity=0.485  Sum_probs=115.9

Q ss_pred             CCCCCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           87 FPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        87 ~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      ++.....+|+++|++|||||||+|+|++......+++.+|+|.....+..+..+.++||||+..........+.|.....
T Consensus        21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  100 (210)
T 1pui_A           21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALG  100 (210)
T ss_dssp             SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHH
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcccccCHHHHHHHHHHHH
Confidence            33445678999999999999999999987324556778888877655444447899999998643111111233444555


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEee
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS  246 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vS  246 (269)
                      .|+.....++.+++++|...+....+.++..++...+.|+++|.||+|+.+..+.......+...+... ....+.+++|
T Consensus       101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~-~~~~~~~~~S  179 (210)
T 1pui_A          101 EYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAF-NGDVQVETFS  179 (210)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGG-CSCEEEEECB
T ss_pred             HHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhc-CCCCceEEEe
Confidence            566555668999999999876665555677777778899999999999987654332223333333221 1235678999


Q ss_pred             CCCCCCHHHHHHHHHHhhhh
Q 024325          247 SKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       247 a~~g~gi~~L~~~i~~~~~~  266 (269)
                      |+++.|+++++++|.+.+..
T Consensus       180 al~~~~~~~l~~~l~~~~~~  199 (210)
T 1pui_A          180 SLKKQGVDKLRQKLDTWFSE  199 (210)
T ss_dssp             TTTTBSHHHHHHHHHHHHC-
T ss_pred             ecCCCCHHHHHHHHHHHHhh
Confidence            99999999999999887643

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.88  E-value=1.4e-22  Score=158.64  Aligned_cols=157  Identities=13%  Similarity=0.052  Sum_probs=93.5

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe--CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~  169 (269)
                      .++|+++|.+|+|||||+|+|++. .....++.++++........  ...+.+|||||....          ..+...++
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----------~~~~~~~~   70 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGV-EDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGG----------RWLPGHCM   70 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC-----------------------
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCc-cccCCCCccccceEEEEEECCEEEEEEEEECCCCccc----------hhhhhhhh
Confidence            468999999999999999999987 44566777777776544332  346889999996321          22223333


Q ss_pred             hcccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEE
Q 024325          170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM  244 (269)
Q Consensus       170 ~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~  244 (269)
                         ..+|++++|+|.+....... ..++..+..    .++|+++|+||+|+.+........  .......   ...++++
T Consensus        71 ---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~--~~~~~~~---~~~~~~~  142 (166)
T 3q72_A           71 ---AMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDE--GRACAVV---FDCKFIE  142 (166)
T ss_dssp             -----CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHH--HHHHHHH---TTCEEEE
T ss_pred             ---hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHH--HHHHHHH---hCCcEEE
Confidence               23899999999875321111 223333332    368999999999998643321111  1111111   2468999


Q ss_pred             eeCCCCCCHHHHHHHHHHhhhhh
Q 024325          245 VSSKSGAGIRSLRTVLSKIARFA  267 (269)
Q Consensus       245 vSa~~g~gi~~L~~~i~~~~~~~  267 (269)
                      +||++|.|+++++++|.+.+...
T Consensus       143 ~Sa~~~~gi~~l~~~l~~~~~~~  165 (166)
T 3q72_A          143 TSAALHHNVQALFEGVVRQIRLR  165 (166)
T ss_dssp             CBGGGTBSHHHHHHHHHHHHHHH
T ss_pred             eccCCCCCHHHHHHHHHHHHHhc
Confidence            99999999999999999887643

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.88  E-value=1.8e-22  Score=171.83  Aligned_cols=171  Identities=19%  Similarity=0.273  Sum_probs=102.4

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCC-------CCCceeEeeEEEe---C--CcEEEEcCCCCCCcchh----H
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-------KPGLTQTINFFKL---G--TKLCLVDLPGYGFAYAK----E  155 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~-------~~gtt~~~~~~~~---~--~~~~lvDtpG~~~~~~~----~  155 (269)
                      .++|+++|.+|+|||||+|+|++.. ......       .++++.+......   +  ..+.+|||||+++....    .
T Consensus         8 ~~~I~vvG~~g~GKSTLin~L~~~~-~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~   86 (274)
T 3t5d_A            8 EFTLMVVGESGLGKSTLINSLFLTD-LYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ   86 (274)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHSSSC-C---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred             EEEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence            4689999999999999999999873 322221       2223333322211   2  27999999999754221    1


Q ss_pred             HHHHHHHHHHHHHHhc----------ccccceEEEEEeCC-CCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHH
Q 024325          156 EVKDAWEELVKEYVST----------RVSLKRVCLLIDTK-WGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARR  224 (269)
Q Consensus       156 ~~~~~~~~~~~~~~~~----------~~~~d~vl~vid~~-~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~  224 (269)
                      .+.+....-...|+..          ...+|+++++++.+ .++...+..+++.+.. ++|+++|+||+|+..+.+....
T Consensus        87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK~D~~~~~e~~~~  165 (274)
T 3t5d_A           87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTPEECQQF  165 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEEESSGGGSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEEEeccCCCCHHHHHHH
Confidence            1111111111233322          11267888888654 4778888888888877 8999999999999987777666


Q ss_pred             HHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhhhh
Q 024325          225 AMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFA  267 (269)
Q Consensus       225 ~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~~~  267 (269)
                      ...+.+.+...   ..+++++||++++|+++++++|.+.+.++
T Consensus       166 ~~~i~~~l~~~---~i~v~~~sa~~~~~~~~l~~~l~~~~p~~  205 (274)
T 3t5d_A          166 KKQIMKEIQEH---KIKIYEFPETDDEEENKLVKKIKDRLPLA  205 (274)
T ss_dssp             HHHHHHHHHHT---TCCCCCC-----------CHHHHHTCSEE
T ss_pred             HHHHHHHHHHc---CCeEEcCCCCCChhHHHHHHHHhcCCCcE
Confidence            56666555432   46789999999999999999999877654

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.88  E-value=7.6e-23  Score=160.87  Aligned_cols=158  Identities=27%  Similarity=0.293  Sum_probs=101.8

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE---EEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~---~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~  169 (269)
                      ++|+++|++|+|||||+|+|++..  ..++..|++|.+...   ...+..+.+|||||+.......    ....+...|+
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~~--~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~----~~~~~~~~~~   77 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGEN--VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANS----IDEIIARDYI   77 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCCS--SSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSS----HHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC--eeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcc----hhHHHHHHHH
Confidence            589999999999999999999873  456777877766432   2235679999999986431111    0112333343


Q ss_pred             hcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCC
Q 024325          170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS  249 (269)
Q Consensus       170 ~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~  249 (269)
                      .. ..+|++++|+|+...  .....++..+...+.|+++|+||+|+..........+.+.+.+      ..+++++||++
T Consensus        78 ~~-~~~~~~i~v~D~~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~SA~~  148 (165)
T 2wji_A           78 IN-EKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKIL------GVKVVPLSAAK  148 (165)
T ss_dssp             HH-HCCSEEEEEEETTCH--HHHHHHHHHHHHTTCCEEEEEECHHHHHHTTCCCCHHHHHHHH------TSCEEECBGGG
T ss_pred             hc-CCCCEEEEEecCCch--hHhHHHHHHHHhcCCCEEEEEEchHhccccChhhHHHHHHHHh------CCCEEEEEcCC
Confidence            31 238999999998741  1223455555556899999999999853211111112222221      36899999999


Q ss_pred             CCCHHHHHHHHHHhhh
Q 024325          250 GAGIRSLRTVLSKIAR  265 (269)
Q Consensus       250 g~gi~~L~~~i~~~~~  265 (269)
                      |+|+++++++|.+.++
T Consensus       149 ~~~v~~l~~~l~~~~~  164 (165)
T 2wji_A          149 KMGIEELKKAISIAVK  164 (165)
T ss_dssp             TBSHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHhh
Confidence            9999999999987763

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.88  E-value=1.9e-22  Score=158.53  Aligned_cols=159  Identities=18%  Similarity=0.143  Sum_probs=101.7

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHh
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~  170 (269)
                      ..++|+++|.+|+|||||+|+|++. ......+..+.+.. .+...+..+.+|||||....          ..+.   ..
T Consensus         6 ~~~~i~v~G~~~~GKssl~~~l~~~-~~~~~~~t~~~~~~-~~~~~~~~~~~~Dt~G~~~~----------~~~~---~~   70 (171)
T 1upt_A            6 REMRILILGLDGAGKTTILYRLQVG-EVVTTIPTIGFNVE-TVTYKNLKFQVWDLGGLTSI----------RPYW---RC   70 (171)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHS-SCCCCCCCSSEEEE-EEEETTEEEEEEEECCCGGG----------GGGG---GG
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcC-CCCCcCCcCccceE-EEEECCEEEEEEECCCChhh----------hHHH---HH
Confidence            3579999999999999999999887 32222222222211 12223677999999997431          1111   12


Q ss_pred             cccccceEEEEEeCCCCCCcc--hHHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEe
Q 024325          171 TRVSLKRVCLLIDTKWGVKPR--DHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV  245 (269)
Q Consensus       171 ~~~~~d~vl~vid~~~~~~~~--~~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v  245 (269)
                      ....+|++++|+|+.......  ...+...+..   .+.|+++|+||+|+.+..........+..  ........+++++
T Consensus        71 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  148 (171)
T 1upt_A           71 YYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGL--PALKDRKWQIFKT  148 (171)
T ss_dssp             GCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTG--GGCTTSCEEEEEC
T ss_pred             HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCc--hhccCCceEEEEC
Confidence            234599999999998653322  2223333332   47899999999999876433332222211  1112234579999


Q ss_pred             eCCCCCCHHHHHHHHHHhhhh
Q 024325          246 SSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       246 Sa~~g~gi~~L~~~i~~~~~~  266 (269)
                      ||++|.|+++++++|.+.+..
T Consensus       149 Sa~~~~gi~~l~~~l~~~i~~  169 (171)
T 1upt_A          149 SATKGTGLDEAMEWLVETLKS  169 (171)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHT
T ss_pred             cCCCCcCHHHHHHHHHHHHhh
Confidence            999999999999999887753

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.88  E-value=6.6e-22  Score=179.11  Aligned_cols=171  Identities=25%  Similarity=0.309  Sum_probs=113.4

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEEeCCcEEEEcCCCCCCcchhH-HHHHHHHHHHH
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKE-EVKDAWEELVK  166 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~~~~~~~lvDtpG~~~~~~~~-~~~~~~~~~~~  166 (269)
                      ..++|+++|++|||||||+|+|++. ....+++++|||++..   +...+..+.+|||||+....... ...+.+..+  
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~-~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~--  255 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNK-ERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNY--  255 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTS-TTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCH--
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCC-cccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHH--
Confidence            4589999999999999999999998 4567999999999863   33346679999999984321100 000000000  


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchH--HHHHHHHHHHHHHhcCCCCCCeEE
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID--VARRAMQIEESLKANNSLVQPVMM  244 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~vi~  244 (269)
                      ........+|++++|+|+..+....+..+...+...+.|+++|+||+|+.....  ..+....+.+.+..  ....|+++
T Consensus       256 ~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  333 (439)
T 1mky_A          256 RVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYF--IDYSPLIF  333 (439)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGG--GTTSCEEE
T ss_pred             HHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCCchhhHHHHHHHHHHHHhcc--CCCCcEEE
Confidence            001112238999999999887777777777778888999999999999986533  22233333322221  12468999


Q ss_pred             eeCCCCCCHHHHHHHHHHhhhh
Q 024325          245 VSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       245 vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      +||++|.|+++|++.|.+.+..
T Consensus       334 ~SA~~g~gv~~l~~~i~~~~~~  355 (439)
T 1mky_A          334 TSADKGWNIDRMIDAMNLAYAS  355 (439)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHHHh
Confidence            9999999999999999887654

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.88  E-value=1.9e-22  Score=183.44  Aligned_cols=159  Identities=19%  Similarity=0.293  Sum_probs=103.8

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      .|+|+++|.+|+|||||+|+|++. ..+.+.+.||+|++......   +..+.+|||||+...  .+...+.+......+
T Consensus        23 ~~~V~lvG~~nvGKSTL~n~l~~~-~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~--~~~~~~~~~~~~~~~   99 (456)
T 4dcu_A           23 KPVVAIVGRPNVGKSTIFNRIAGE-RISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIG--DEPFLAQIRQQAEIA   99 (456)
T ss_dssp             CCEEEEECSSSSSHHHHHHHHEEE-EEC-----------CEEEECTTCSSCCEEECCCC--------CCHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCC-CCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCc--chHHHHHHHHHHHhh
Confidence            579999999999999999999998 66788999999999876653   678999999998632  111122222233333


Q ss_pred             HhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCC
Q 024325          169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSK  248 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~  248 (269)
                      +.   .+|++++|+|+..++...+.++.+.+...++|+++|+||+|+.....      ...+.. .  ....+++++||+
T Consensus       100 ~~---~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~~------~~~e~~-~--lg~~~~~~iSA~  167 (456)
T 4dcu_A          100 MD---EADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA------NIYDFY-S--LGFGEPYPISGT  167 (456)
T ss_dssp             HH---HCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---------------CCSG-G--GSSSSEEECCTT
T ss_pred             Hh---hCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhhh------hHHHHH-H--cCCCceEEeecc
Confidence            33   39999999999988888899999999888999999999999864321      111111 1  112356899999


Q ss_pred             CCCCHHHHHHHHHHhhh
Q 024325          249 SGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       249 ~g~gi~~L~~~i~~~~~  265 (269)
                      +|.|+++|++.+.+.+.
T Consensus       168 ~g~gv~~L~~~i~~~l~  184 (456)
T 4dcu_A          168 HGLGLGDLLDAVAEHFK  184 (456)
T ss_dssp             TCTTHHHHHHHHHTTGG
T ss_pred             cccchHHHHHHHHhhcc
Confidence            99999999999987764

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.88  E-value=4.6e-22  Score=160.42  Aligned_cols=161  Identities=14%  Similarity=0.128  Sum_probs=103.4

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcCcCcccc--CCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRT--SDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~--s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      ...++|+++|.+|+|||||+|+|++. ....+  .+..+.+... +...+..+.+|||||....          ..+.. 
T Consensus        15 ~~~~ki~v~G~~~~GKSsl~~~l~~~-~~~~~~~~~t~~~~~~~-~~~~~~~~~i~Dt~G~~~~----------~~~~~-   81 (199)
T 4bas_A           15 KTKLQVVMCGLDNSGKTTIINQVKPA-QSSSKHITATVGYNVET-FEKGRVAFTVFDMGGAKKF----------RGLWE-   81 (199)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHSCC-C----CCCCCSSEEEEE-EEETTEEEEEEEECCSGGG----------GGGGG-
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcC-CCcccccccccceeEEE-EEeCCEEEEEEECCCCHhH----------HHHHH-
Confidence            44579999999999999999999997 33332  3333322221 2234677999999997431          11112 


Q ss_pred             HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHhh-----------CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhc
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS-----------QTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN  235 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~~-----------~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~  235 (269)
                        .....+|++++|+|+........ ..++..+...           ++|+++|+||+|+............+..... .
T Consensus        82 --~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~-~  158 (199)
T 4bas_A           82 --TYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTL-M  158 (199)
T ss_dssp             --GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHH-H
T ss_pred             --HHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhh-c
Confidence              22345999999999985422221 1233333222           7899999999999877444333333321111 0


Q ss_pred             CCCCCCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325          236 NSLVQPVMMVSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       236 ~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      .....+++++||++|.|+++++++|.+.+..
T Consensus       159 ~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  189 (199)
T 4bas_A          159 GDHPFVIFASNGLKGTGVHEGFSWLQETASR  189 (199)
T ss_dssp             TTSCEEEEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred             cCCeeEEEEeeCCCccCHHHHHHHHHHHHHH
Confidence            2235689999999999999999999887653

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.88  E-value=5.4e-22  Score=181.33  Aligned_cols=161  Identities=24%  Similarity=0.356  Sum_probs=116.1

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcC---c--cccCCCCCceeEeeEE---EeCCcEEEEcCCCCCCcchhHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWG---V--VRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEE  163 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~---~--~~~s~~~gtt~~~~~~---~~~~~~~lvDtpG~~~~~~~~~~~~~~~~  163 (269)
                      .++|+++|.+|+|||||+|+|++...   .  ...+..+|+|.+..+.   ..+..+.+|||||+             ..
T Consensus        19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh-------------~~   85 (482)
T 1wb1_A           19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGH-------------AD   85 (482)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSH-------------HH
T ss_pred             CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCCh-------------HH
Confidence            46899999999999999999998731   1  2234566777776432   23568999999996             23


Q ss_pred             HHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhc-CCCCCCe
Q 024325          164 LVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN-NSLVQPV  242 (269)
Q Consensus       164 ~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~v  242 (269)
                      +..........+|++++|+|+..+...+..+.+..+...++|+++|+||+|+.+........+.+.+.+... .....++
T Consensus        86 ~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~i  165 (482)
T 1wb1_A           86 LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSI  165 (482)
T ss_dssp             HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCE
T ss_pred             HHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceE
Confidence            344455556679999999999988888888888888888999999999999997655555556666655443 2225789


Q ss_pred             EEeeCCCCCCHHHHHHHHHHhhh
Q 024325          243 MMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       243 i~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      +++||++|+|+++|+++|.+.+.
T Consensus       166 i~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          166 IPISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHhhc
Confidence            99999999999999999988654

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.88  E-value=1.6e-21  Score=159.37  Aligned_cols=156  Identities=21%  Similarity=0.327  Sum_probs=102.3

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe----CCcEEEEcCCCCCCcchhHHHHHHHHH-HH
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEE-LV  165 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~----~~~~~lvDtpG~~~~~~~~~~~~~~~~-~~  165 (269)
                      ..++|+++|.+|+|||||+|+|++..   +...+++++.+......    +..+.+|||||...          +.. +.
T Consensus         6 ~~~ki~vvG~~~~GKTsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~   72 (214)
T 2fh5_B            6 SQRAVLFVGLCDSGKTLLFVRLLTGQ---YRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHES----------LRFQLL   72 (214)
T ss_dssp             --CEEEEECSTTSSHHHHHHHHHHSC---CCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHH----------HHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC---cccccCCcceeeEEEEecCCCccEEEEEECCCChh----------HHHHHH
Confidence            35799999999999999999999872   34455555555443333    35699999999721          122 33


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcchHHHHH----HHH-----hhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHh--
Q 024325          166 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS----LME-----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA--  234 (269)
Q Consensus       166 ~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~----~l~-----~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~--  234 (269)
                      ..|+.   .+|++++|+|+.. .........+    .+.     ..+.|+++|+||+|+..........+.+.+.+..  
T Consensus        73 ~~~~~---~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~  148 (214)
T 2fh5_B           73 DRFKS---SARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLR  148 (214)
T ss_dssp             HHHGG---GEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHh---hCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHh
Confidence            44433   4999999999874 1111222222    222     2368999999999998765555555555554441  


Q ss_pred             -----------------cCCC-------------CCCeEEeeCCCC------CCHHHHHHHHHHh
Q 024325          235 -----------------NNSL-------------VQPVMMVSSKSG------AGIRSLRTVLSKI  263 (269)
Q Consensus       235 -----------------~~~~-------------~~~vi~vSa~~g------~gi~~L~~~i~~~  263 (269)
                                       ....             ..+++++||++|      .|+++++++|.+.
T Consensus       149 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          149 VTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             HHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             ccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                             0000             456899999999      9999999999875

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.88  E-value=9.8e-22  Score=176.12  Aligned_cols=162  Identities=18%  Similarity=0.223  Sum_probs=113.0

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCcee--------------Eee-----E---EEeCCcEEEEcCCC
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ--------------TIN-----F---FKLGTKLCLVDLPG  147 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~--------------~~~-----~---~~~~~~~~lvDtpG  147 (269)
                      ...++|+++|.+|+|||||+|+|++.. ......++.++.              +..     .   ......+.+|||||
T Consensus         6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG   84 (403)
T 3sjy_A            6 QPEVNIGVVGHVDHGKTTLVQAITGIW-TSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG   84 (403)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHSCC-CCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCcc-cccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence            456799999999999999999999852 111111111110              000     0   01125689999999


Q ss_pred             CCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCC-CcchHHHHHHHHhhCC-cEEEEEecCCCCCchHHHHHH
Q 024325          148 YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERSQT-KYQVVLTKTDTVFPIDVARRA  225 (269)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~-~~~~~~~~~~l~~~~~-p~iiv~NK~Dl~~~~~~~~~~  225 (269)
                      +..             +..........+|++++|+|+..+. ..+..+++..+...+. |+++|+||+|+.+........
T Consensus        85 h~~-------------~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~  151 (403)
T 3sjy_A           85 HEV-------------LMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQY  151 (403)
T ss_dssp             CGG-------------GHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHH
T ss_pred             cHH-------------HHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHH
Confidence            732             2223333445599999999999876 5566677777776664 899999999999876666666


Q ss_pred             HHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          226 MQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       226 ~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      +.+.+.+........|++++||++|.|+++|+++|.+.+.
T Consensus       152 ~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~  191 (403)
T 3sjy_A          152 RQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK  191 (403)
T ss_dssp             HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence            6666655544444678999999999999999999988653

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.87  E-value=3.3e-22  Score=159.59  Aligned_cols=159  Identities=18%  Similarity=0.204  Sum_probs=102.3

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHh
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~  170 (269)
                      ..++|+++|.+|+|||||+|+|++. ......+..|++..... ..+..+.+|||||....          ..+...++.
T Consensus        15 ~~~ki~ivG~~~vGKSsL~~~l~~~-~~~~~~~t~g~~~~~~~-~~~~~l~i~Dt~G~~~~----------~~~~~~~~~   82 (181)
T 1fzq_A           15 QEVRILLLGLDNAGKTTLLKQLASE-DISHITPTQGFNIKSVQ-SQGFKLNVWDIGGQRKI----------RPYWRSYFE   82 (181)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCCS-CCEEEEEETTEEEEEEE-ETTEEEEEEECSSCGGG----------HHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcC-CCCcccCcCCeEEEEEE-ECCEEEEEEECCCCHHH----------HHHHHHHhC
Confidence            4579999999999999999999987 44444555554432222 23677999999997321          122233333


Q ss_pred             cccccceEEEEEeCCCCCCcch-HHHHH-HHH---hhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEe
Q 024325          171 TRVSLKRVCLLIDTKWGVKPRD-HELIS-LME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV  245 (269)
Q Consensus       171 ~~~~~d~vl~vid~~~~~~~~~-~~~~~-~l~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v  245 (269)
                         .+|++++|+|+........ ..++. .+.   ..+.|+++|+||+|+..........+.+.  +........+++++
T Consensus        83 ---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  157 (181)
T 1fzq_A           83 ---NTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLN--LHTIRDRVWQIQSC  157 (181)
T ss_dssp             ---TCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTT--GGGCCSSCEEEEEC
T ss_pred             ---CCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhC--chhccCCceEEEEc
Confidence               4999999999875322211 12222 222   24689999999999986543322222111  01111224578999


Q ss_pred             eCCCCCCHHHHHHHHHHhhhh
Q 024325          246 SSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       246 Sa~~g~gi~~L~~~i~~~~~~  266 (269)
                      ||++|.|+++++++|.+.+..
T Consensus       158 Sa~~g~gi~~l~~~l~~~~~~  178 (181)
T 1fzq_A          158 SALTGEGVQDGMNWVCKNVNA  178 (181)
T ss_dssp             CTTTCTTHHHHHHHHHHTC--
T ss_pred             cCCCCCCHHHHHHHHHHHHHh
Confidence            999999999999999887643

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.87  E-value=9.7e-22  Score=155.08  Aligned_cols=157  Identities=13%  Similarity=0.030  Sum_probs=96.9

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      .++|+++|.+|+|||||+|+|++. ......+.+|++........   ...+.+|||||....        ....+...+
T Consensus         4 ~~ki~i~G~~~vGKSsl~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~~~~~~~   74 (175)
T 2nzj_A            4 LYRVVLLGDPGVGKTSLASLFAGK-QERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKL--------DKSWSQESC   74 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC---------------CHHHHHT
T ss_pred             EEEEEEECCCCccHHHHHHHHhcC-CCccccCccccceeEEEEEECCEEEEEEEEecCCCCcc--------chhhhHHhh
Confidence            468999999999999999999987 44445556666544433332   236889999997431        011222222


Q ss_pred             HhcccccceEEEEEeCCCCCCcch-HHHHHHHHhh----CCcEEEEEecCCCCCchHHH-HHHHHHHHHHHhcCCCCCCe
Q 024325          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS----QTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLVQPV  242 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~~----~~p~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~v  242 (269)
                         ...+|++++|+|......... ..++..+...    ++|+++|+||+|+.+..+.. .....+..   ..   ..++
T Consensus        75 ---~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~---~~---~~~~  145 (175)
T 2nzj_A           75 ---LQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAV---VF---DCKF  145 (175)
T ss_dssp             ---TTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHH---HH---TSEE
T ss_pred             ---cccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHH---Hc---CCeE
Confidence               234899999999874322111 2344444432    68999999999997643221 11111111   11   3689


Q ss_pred             EEeeCCCCCCHHHHHHHHHHhhhh
Q 024325          243 MMVSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       243 i~vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      +++||++|.|+++++++|.+.+..
T Consensus       146 ~~~Sa~~g~gi~~l~~~l~~~~~~  169 (175)
T 2nzj_A          146 IETSATLQHNVAELFEGVVRQLRL  169 (175)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EEEecCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999887654

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.87  E-value=7e-22  Score=154.38  Aligned_cols=157  Identities=16%  Similarity=0.154  Sum_probs=97.7

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe-eEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST  171 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~-~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~  171 (269)
                      .+|+++|.+|+|||||+|+|++.. .  ....|...... .+...+..+.+|||||....          ..+...++  
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~-~--~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~--   65 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGE-I--VTTIPTIGFNVETVEYKNISFTVWDVGGQDKI----------RPLWRHYF--   65 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHC-S--SCCCCCSSCCEEEEECSSCEEEEEECCCCGGG----------HHHHHHHT--
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCC-c--CcccCcCceeEEEEEECCEEEEEEEcCCChhh----------HHHHHHHh--
Confidence            379999999999999999999862 2  22233211111 12223678999999997321          22223333  


Q ss_pred             ccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEee
Q 024325          172 RVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS  246 (269)
Q Consensus       172 ~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vS  246 (269)
                       ..+|++++|+|+........ ..++..+..    .+.|+++|+||+|+............+.  .........+++++|
T Consensus        66 -~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~--~~~~~~~~~~~~~~S  142 (164)
T 1r8s_A           66 -QNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLG--LHSLRHRNWYIQATC  142 (164)
T ss_dssp             -TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTT--GGGCSSCCEEEEECB
T ss_pred             -ccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhC--cccccCccEEEEEcc
Confidence             34999999999875422111 122332222    2789999999999986533222222111  011112345799999


Q ss_pred             CCCCCCHHHHHHHHHHhhhhh
Q 024325          247 SKSGAGIRSLRTVLSKIARFA  267 (269)
Q Consensus       247 a~~g~gi~~L~~~i~~~~~~~  267 (269)
                      |++|.|+++++++|.+.+...
T Consensus       143 a~~~~gi~~l~~~l~~~i~~~  163 (164)
T 1r8s_A          143 ATSGDGLYEGLDWLSNQLRNQ  163 (164)
T ss_dssp             TTTTBTHHHHHHHHHHHC---
T ss_pred             cCCCcCHHHHHHHHHHHHhhc
Confidence            999999999999999877543

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.87  E-value=7.7e-22  Score=157.66  Aligned_cols=159  Identities=15%  Similarity=0.097  Sum_probs=102.4

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHh
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~  170 (269)
                      ..++|+++|.+|+|||||+|+|++.. .....+..+.+.. .....+..+.+|||||...          +..   ....
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~-~~~~~~~~~~~~Dt~G~~~----------~~~---~~~~   81 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNIK-TLEHRGFKLNIWDVGGQKS----------LRS---YWRN   81 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEEE-EEEETTEEEEEEEECCSHH----------HHT---TGGG
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccceE-EEEECCEEEEEEECCCCHh----------HHH---HHHH
Confidence            45799999999999999999999873 3333333332222 1222467799999999721          111   1223


Q ss_pred             cccccceEEEEEeCCCCCCcch-HHHHHHH-Hh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEe
Q 024325          171 TRVSLKRVCLLIDTKWGVKPRD-HELISLM-ER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV  245 (269)
Q Consensus       171 ~~~~~d~vl~vid~~~~~~~~~-~~~~~~l-~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v  245 (269)
                      ....+|++++|+|++....... ..++..+ ..   .+.|+++|+||+|+..........+.+.  .........+++++
T Consensus        82 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  159 (186)
T 1ksh_A           82 YFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALE--LDSIRSHHWRIQGC  159 (186)
T ss_dssp             GCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTT--GGGCCSSCEEEEEC
T ss_pred             HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhC--hhhccCCceEEEEe
Confidence            3456999999999875422221 1233333 22   4689999999999987544332222111  01111234679999


Q ss_pred             eCCCCCCHHHHHHHHHHhhhh
Q 024325          246 SSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       246 Sa~~g~gi~~L~~~i~~~~~~  266 (269)
                      ||++|.|+++++++|.+.+..
T Consensus       160 Sa~~~~gi~~l~~~l~~~i~~  180 (186)
T 1ksh_A          160 SAVTGEDLLPGIDWLLDDISS  180 (186)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHT
T ss_pred             eCCCCCCHHHHHHHHHHHHHh
Confidence            999999999999999887654

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.87  E-value=2.2e-22  Score=171.02  Aligned_cols=159  Identities=23%  Similarity=0.292  Sum_probs=111.6

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE---EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~---~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      .++|+++|++|||||||+|+|++..  ..+++.|++|.+....   ..+..+.+|||||+........ .   ..+...|
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~--~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~-~---~~~~~~~   76 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLR--QHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSI-D---ELIARNF   76 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTC--EEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCH-H---HHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCC--cccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCH-H---HHHHHHh
Confidence            4689999999999999999999983  4788899998886432   2356799999999865321111 1   1122333


Q ss_pred             HhcccccceEEEEEeCCCCCCcchHHHHHHHHhhC-CcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeC
Q 024325          169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ-TKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS  247 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~-~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa  247 (269)
                      +. ...+|++++|+|++..  .....+...+...+ .|+++|+||+|+............+.+.+      +.|++++||
T Consensus        77 ~~-~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l------g~~~~~~Sa  147 (271)
T 3k53_A           77 IL-DGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKMRKEL------GVPVIPTNA  147 (271)
T ss_dssp             HH-TTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHHHHHH------SSCEEECBG
T ss_pred             hh-ccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHHHHHc------CCcEEEEEe
Confidence            32 2359999999999753  23344555555566 99999999999764322111122333322      478999999


Q ss_pred             CCCCCHHHHHHHHHHhhh
Q 024325          248 KSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       248 ~~g~gi~~L~~~i~~~~~  265 (269)
                      ++|.|+++++++|.+.+.
T Consensus       148 ~~g~gi~~l~~~i~~~~~  165 (271)
T 3k53_A          148 KKGEGVEELKRMIALMAE  165 (271)
T ss_dssp             GGTBTHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHh
Confidence            999999999999988764

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.87  E-value=7e-22  Score=157.83  Aligned_cols=153  Identities=17%  Similarity=0.124  Sum_probs=100.4

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE---EeC--CcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~---~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      .++|+++|.+|+|||||+|+|++..   ....+++++.+....   ..+  ..+.+|||||....          ..+..
T Consensus         4 ~~ki~v~G~~~~GKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~   70 (189)
T 4dsu_A            4 EYKLVVVGADGVGKSALTIQLIQNH---FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY----------SAMRD   70 (189)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSS---CCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC-------------CTTHH
T ss_pred             EEEEEEECCCCCCHHHHHHHHHhCC---CCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHH----------HHHHH
Confidence            3689999999999999999999872   345555565543221   122  34778999996432          12222


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCC
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP  241 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (269)
                      .++..   +|++++|+|......... ..++..+..    .+.|+++|+||+|+............+....      ..+
T Consensus        71 ~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~------~~~  141 (189)
T 4dsu_A           71 QYMRT---GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSY------GIP  141 (189)
T ss_dssp             HHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHH------TCC
T ss_pred             HHHhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHc------CCe
Confidence            33333   899999999875321111 223333332    3689999999999986433333333333222      468


Q ss_pred             eEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325          242 VMMVSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       242 vi~vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      ++++||++|.|+++++++|.+.+..
T Consensus       142 ~~~~Sa~~g~gi~~l~~~l~~~~~~  166 (189)
T 4dsu_A          142 FIETSAKTRQGVDDAFYTLVREIRK  166 (189)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999887653

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.87  E-value=3.1e-22  Score=160.70  Aligned_cols=162  Identities=15%  Similarity=0.146  Sum_probs=99.4

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcC-ccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWG-VVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~-~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~  169 (269)
                      ..++|+++|.+|+|||||+|+|++... .....+..+.+.. .+...+..+.+|||||.....          .+...  
T Consensus        20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~l~Dt~G~~~~~----------~~~~~--   86 (190)
T 2h57_A           20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIE-KFKSSSLSFTVFDMSGQGRYR----------NLWEH--   86 (190)
T ss_dssp             -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEE-EEECSSCEEEEEEECCSTTTG----------GGGGG--
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEE-EEEECCEEEEEEECCCCHHHH----------HHHHH--
Confidence            347999999999999999999998731 1111222221111 122236789999999974321          11112  


Q ss_pred             hcccccceEEEEEeCCCCCCcc--hHHHHHHHHh-----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325          170 STRVSLKRVCLLIDTKWGVKPR--DHELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  242 (269)
Q Consensus       170 ~~~~~~d~vl~vid~~~~~~~~--~~~~~~~l~~-----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  242 (269)
                       ....+|++++|+|+.......  ...+...+..     .+.|+++|+||+|+..........+.+.  +........++
T Consensus        87 -~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~--~~~~~~~~~~~  163 (190)
T 2h57_A           87 -YYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLC--LENIKDKPWHI  163 (190)
T ss_dssp             -GGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHT--GGGCCSSCEEE
T ss_pred             -HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhC--hhhccCCceEE
Confidence             233489999999987531111  1222233333     4689999999999986543333222211  01111235689


Q ss_pred             EEeeCCCCCCHHHHHHHHHHhhhhhc
Q 024325          243 MMVSSKSGAGIRSLRTVLSKIARFAK  268 (269)
Q Consensus       243 i~vSa~~g~gi~~L~~~i~~~~~~~k  268 (269)
                      +++||++|.|+++++++|.+.++..|
T Consensus       164 ~~~Sa~~~~gi~~l~~~l~~~i~~~k  189 (190)
T 2h57_A          164 CASDAIKGEGLQEGVDWLQDQIQTVK  189 (190)
T ss_dssp             EECBTTTTBTHHHHHHHHHHHC----
T ss_pred             EEccCCCCcCHHHHHHHHHHHHHHhc
Confidence            99999999999999999999887653

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.87  E-value=1.8e-22  Score=173.51  Aligned_cols=171  Identities=19%  Similarity=0.216  Sum_probs=111.2

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHhcCcCcc-----ccCCCCC----------------------ceeEe---------
Q 024325           88 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVV-----RTSDKPG----------------------LTQTI---------  131 (269)
Q Consensus        88 ~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~-----~~s~~~g----------------------tt~~~---------  131 (269)
                      +....|+|+++|.+|+|||||+|+|++. ...     .++..|+                      +|.+.         
T Consensus        22 ~~~~~~~i~vvG~~~~GKSSLln~l~g~-~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~  100 (299)
T 2aka_B           22 ADLDLPQIAVVGGQSAGKSSVLENFVGR-DFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAET  100 (299)
T ss_dssp             TTCCCCEEEEEEBTTSCHHHHHHHHHTS-CCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHH
T ss_pred             CCCCCCeEEEEeCCCCCHHHHHHHHHCC-CcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHH
Confidence            3456789999999999999999999997 333     3445554                      33320         


Q ss_pred             -----------------eEEE-eCCcEEEEcCCCCCCcch---hHHHHHHHHHHHHHHHhcccccceE-EEEEeCCCCCC
Q 024325          132 -----------------NFFK-LGTKLCLVDLPGYGFAYA---KEEVKDAWEELVKEYVSTRVSLKRV-CLLIDTKWGVK  189 (269)
Q Consensus       132 -----------------~~~~-~~~~~~lvDtpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~v-l~vid~~~~~~  189 (269)
                                       .... ....+.+|||||+.....   .+.+...+..+...|+..   ++.+ ++|+|+..++.
T Consensus       101 ~~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~il~v~d~~~~~~  177 (299)
T 2aka_B          101 DRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTK---ENCLILAVSPANSDLA  177 (299)
T ss_dssp             HHHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTS---TTEEEEEEEESSSCGG
T ss_pred             HHhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcC---CCeEEEEEecCCcchh
Confidence                             0000 136799999999875321   222333445566666653   5544 57999987666


Q ss_pred             cchH-HHHHHHHhhCCcEEEEEecCCCCCchH-HHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          190 PRDH-ELISLMERSQTKYQVVLTKTDTVFPID-VARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       190 ~~~~-~~~~~l~~~~~p~iiv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      ..+. .+++.+...+.|+++|+||+|+.+... ...   .+...+........+++++||++|.|+++|+++|.+...
T Consensus       178 ~~~~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~---~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~~  252 (299)
T 2aka_B          178 NSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARD---VLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERK  252 (299)
T ss_dssp             GCHHHHHHHHHCTTCSSEEEEEECGGGSCTTCCCHH---HHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHHH
T ss_pred             hhHHHHHHHHhCCCCCeEEEEEEccccCCCCchHHH---HHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHHH
Confidence            6653 566777667899999999999986533 111   111100000001246889999999999999999877543

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.87  E-value=8.7e-22  Score=157.66  Aligned_cols=158  Identities=15%  Similarity=0.121  Sum_probs=100.9

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHh
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~  170 (269)
                      ..++|+++|.+|+|||||+|+|++.. .....+..+.+... +...+..+.+|||||....          ..+...++ 
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~~-~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~-   81 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFSMNE-VVHTSPTIGSNVEE-IVINNTRFLMWDIGGQESL----------RSSWNTYY-   81 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTTS-CEEEECCSCSSCEE-EEETTEEEEEEECCC--------------CGGGHHHH-
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCC-CCcCcCCCccceEE-EEECCEEEEEEECCCCHhH----------HHHHHHHh-
Confidence            34799999999999999999999763 23333433333221 2224678999999997431          11222333 


Q ss_pred             cccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEe
Q 024325          171 TRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV  245 (269)
Q Consensus       171 ~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v  245 (269)
                        ..+|++++|+|++....... ..++..+..    .+.|+++|+||+|+.......+..+.+..  ........+++++
T Consensus        82 --~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~--~~~~~~~~~~~~~  157 (187)
T 1zj6_A           82 --TNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKL--TSIKDHQWHIQAC  157 (187)
T ss_dssp             --TTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTG--GGCCSSCEEEEEC
T ss_pred             --cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhCh--hhhcCCCcEEEEc
Confidence              24999999999986532222 223333332    47899999999999864333322222211  0112234589999


Q ss_pred             eCCCCCCHHHHHHHHHHhhh
Q 024325          246 SSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       246 Sa~~g~gi~~L~~~i~~~~~  265 (269)
                      ||++|.|+++++++|.+.+.
T Consensus       158 Sa~~g~gi~~l~~~l~~~~~  177 (187)
T 1zj6_A          158 CALTGEGLCQGLEWMMSRLK  177 (187)
T ss_dssp             BTTTTBTHHHHHHHHHHHHC
T ss_pred             cCCCCcCHHHHHHHHHHHHH
Confidence            99999999999999988764

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.87  E-value=1.9e-21  Score=174.65  Aligned_cols=163  Identities=20%  Similarity=0.297  Sum_probs=116.5

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcCcC-ccccCCCCCceeEeeEEE--------------------------eCCcEEE
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQWG-VVRTSDKPGLTQTINFFK--------------------------LGTKLCL  142 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~-~~~~s~~~gtt~~~~~~~--------------------------~~~~~~l  142 (269)
                      ...++|+++|++|+|||||+++|++... .......+|+|.+..+..                          ....+.+
T Consensus         8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i   87 (410)
T 1kk1_A            8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF   87 (410)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence            3457899999999999999999997521 111122355565543211                          0146899


Q ss_pred             EcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCC-CcchHHHHHHHHhhCC-cEEEEEecCCCCCchH
Q 024325          143 VDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERSQT-KYQVVLTKTDTVFPID  220 (269)
Q Consensus       143 vDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~-~~~~~~~~~~l~~~~~-p~iiv~NK~Dl~~~~~  220 (269)
                      |||||+             ..+...+......+|++++|+|+..+. ..+..+.+..+...+. |+++|+||+|+.+...
T Consensus        88 iDtPGh-------------~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~  154 (410)
T 1kk1_A           88 IDAPGH-------------EALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEK  154 (410)
T ss_dssp             EECSSH-------------HHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHH
T ss_pred             EECCCh-------------HHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHH
Confidence            999995             344556667777799999999999876 5666666666666664 7999999999998655


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          221 VARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      .....+.+.+.+........|++++||++|.|+++|+++|.+.+.
T Consensus       155 ~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~  199 (410)
T 1kk1_A          155 ALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP  199 (410)
T ss_dssp             HHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            444445555554433234579999999999999999999987653

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.87  E-value=3e-22  Score=159.66  Aligned_cols=156  Identities=15%  Similarity=0.121  Sum_probs=101.8

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHh
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~  170 (269)
                      ..++|+++|.+|+|||||+|+|++. ......+..+.+... +...+..+.+|||||....          ..+..   .
T Consensus        20 ~~~~i~v~G~~~~GKSsli~~l~~~-~~~~~~~t~~~~~~~-~~~~~~~~~i~Dt~G~~~~----------~~~~~---~   84 (181)
T 2h17_A           20 QEHKVIIVGLDNAGKTTILYQFSMN-EVVHTSPTIGSNVEE-IVINNTRFLMWDIGGQESL----------RSSWN---T   84 (181)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHTT-SCEEEECCSSSSCEE-EEETTEEEEEEEESSSGGG----------TCGGG---G
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcC-CCCccCCcCceeeEE-EEECCEEEEEEECCCCHhH----------HHHHH---H
Confidence            3579999999999999999999987 344455555544322 2224678999999997431          11111   2


Q ss_pred             cccccceEEEEEeCCCCCCcch-HHHHHH-HH---hhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEe
Q 024325          171 TRVSLKRVCLLIDTKWGVKPRD-HELISL-ME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV  245 (269)
Q Consensus       171 ~~~~~d~vl~vid~~~~~~~~~-~~~~~~-l~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v  245 (269)
                      ....+|++++|+|+........ ..++.. +.   ..+.|+++|+||+|+..........+.+.  .........+++++
T Consensus        85 ~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~--~~~~~~~~~~~~~~  162 (181)
T 2h17_A           85 YYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLK--LTSIKDHQWHIQAC  162 (181)
T ss_dssp             GGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTT--GGGCCSSCEEEEEC
T ss_pred             HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhC--cccccCCceEEEEc
Confidence            2345999999999986533222 222333 32   25789999999999986433322222111  11112234579999


Q ss_pred             eCCCCCCHHHHHHHHHHh
Q 024325          246 SSKSGAGIRSLRTVLSKI  263 (269)
Q Consensus       246 Sa~~g~gi~~L~~~i~~~  263 (269)
                      ||++|.|+++++++|.+.
T Consensus       163 Sa~~g~gi~~l~~~l~~~  180 (181)
T 2h17_A          163 CALTGEGLCQGLEWMMSR  180 (181)
T ss_dssp             BTTTTBTHHHHHHHHHTC
T ss_pred             cCCCCcCHHHHHHHHHhh
Confidence            999999999999999764

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.87  E-value=2.6e-21  Score=173.59  Aligned_cols=163  Identities=22%  Similarity=0.286  Sum_probs=108.1

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcCcC-ccccCCCCCceeEeeEEEe--------------------------CCcEEE
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQWG-VVRTSDKPGLTQTINFFKL--------------------------GTKLCL  142 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~-~~~~s~~~gtt~~~~~~~~--------------------------~~~~~l  142 (269)
                      ...++|+++|++++|||||+++|++... .......+|+|.+..+...                          ...+.+
T Consensus         6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i   85 (408)
T 1s0u_A            6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF   85 (408)
T ss_dssp             CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence            3457999999999999999999997521 1112223556665432110                          146899


Q ss_pred             EcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCC-CcchHHHHHHHHhhCC-cEEEEEecCCCCCchH
Q 024325          143 VDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERSQT-KYQVVLTKTDTVFPID  220 (269)
Q Consensus       143 vDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~-~~~~~~~~~~l~~~~~-p~iiv~NK~Dl~~~~~  220 (269)
                      |||||+             ..+...+......+|++++|+|+..+. ..+..+.+..+...+. |+++|+||+|+.+...
T Consensus        86 iDtPGh-------------~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~  152 (408)
T 1s0u_A           86 VDSPGH-------------ETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQ  152 (408)
T ss_dssp             EECSSH-------------HHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTT
T ss_pred             EECCCH-------------HHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHH
Confidence            999995             344556677777899999999999876 5666666666666554 7999999999987644


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          221 VARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      .....+.+.+.+........+++++||++|+|+++|+++|.+.+.
T Consensus       153 ~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~  197 (408)
T 1s0u_A          153 AEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP  197 (408)
T ss_dssp             TTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            323334444444433334578999999999999999999987653

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.87  E-value=1.6e-21  Score=156.45  Aligned_cols=159  Identities=14%  Similarity=0.116  Sum_probs=99.6

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhc
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST  171 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~  171 (269)
                      .++|+++|.+|+|||||+|+|++........+..+.+.. .+...+..+.+|||||...          +..+...++  
T Consensus        22 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~l~Dt~G~~~----------~~~~~~~~~--   88 (188)
T 1zd9_A           22 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR-KITKGNVTIKLWDIGGQPR----------FRSMWERYC--   88 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE-EEEETTEEEEEEEECCSHH----------HHTTHHHHH--
T ss_pred             ccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE-EEEeCCEEEEEEECCCCHh----------HHHHHHHHH--
Confidence            468999999999999999999987311112222222211 1223366799999999621          222333333  


Q ss_pred             ccccceEEEEEeCCCCCCcch-HHHHH-HHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEee
Q 024325          172 RVSLKRVCLLIDTKWGVKPRD-HELIS-LMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS  246 (269)
Q Consensus       172 ~~~~d~vl~vid~~~~~~~~~-~~~~~-~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vS  246 (269)
                       ..+|++++|+|+........ ..++. .+..   .+.|+++|+||+|+....+.......+..  ........+++++|
T Consensus        89 -~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~S  165 (188)
T 1zd9_A           89 -RGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNL--SAIQDREICCYSIS  165 (188)
T ss_dssp             -TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTG--GGCCSSCEEEEECC
T ss_pred             -ccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhCh--hhhccCCeeEEEEE
Confidence             34999999999875322111 12222 2222   47899999999999865333222221110  11112345789999


Q ss_pred             CCCCCCHHHHHHHHHHhhhh
Q 024325          247 SKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       247 a~~g~gi~~L~~~i~~~~~~  266 (269)
                      |++|.|+++++++|.+.+..
T Consensus       166 A~~g~gv~~l~~~l~~~~~~  185 (188)
T 1zd9_A          166 CKEKDNIDITLQWLIQHSKS  185 (188)
T ss_dssp             TTTCTTHHHHHHHHHHTCC-
T ss_pred             CCCCCCHHHHHHHHHHHHHh
Confidence            99999999999999987654

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.87  E-value=7.2e-22  Score=157.97  Aligned_cols=160  Identities=26%  Similarity=0.273  Sum_probs=108.5

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE---EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~---~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      .++|+++|.+|+|||||+|+|++..  ..++..|++|.+....   ..+..+.+|||||.........    ...+...|
T Consensus         7 ~~~i~lvG~~gvGKStL~~~l~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~----~~~~~~~~   80 (188)
T 2wjg_A            7 SYEIALIGNPNVGKSTIFNALTGEN--VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSI----DEIIARDY   80 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTTC--EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSH----HHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC--ccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccH----HHHHHHHH
Confidence            4689999999999999999999873  5667788888765422   2366799999999865321110    01222333


Q ss_pred             HhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCC
Q 024325          169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSK  248 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~  248 (269)
                      +.. ..++++++|+|+..  ......++..+...+.|+++|+||+|+............+.+.+      +.+++++||+
T Consensus        81 ~~~-~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~Sa~  151 (188)
T 2wjg_A           81 IIN-EKPDLVVNIVDATA--LERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKIL------GVKVVPLSAA  151 (188)
T ss_dssp             HHH-HCCSEEEEEEEGGG--HHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHHHHH------TSCEEECBGG
T ss_pred             Hhc-cCCCEEEEEecchh--HHHHHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHHHHh------CCCeEEEEec
Confidence            322 23899999999863  12223455556667899999999999864321111112222221      3689999999


Q ss_pred             CCCCHHHHHHHHHHhhhh
Q 024325          249 SGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       249 ~g~gi~~L~~~i~~~~~~  266 (269)
                      +|.|+++++++|.+.+..
T Consensus       152 ~~~~v~~l~~~i~~~~~~  169 (188)
T 2wjg_A          152 KKMGIEELKKAISIAVKD  169 (188)
T ss_dssp             GTBSHHHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHHh
Confidence            999999999999887653

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.86  E-value=5.2e-21  Score=151.69  Aligned_cols=155  Identities=15%  Similarity=0.161  Sum_probs=99.3

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE--EEeC---CcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~--~~~~---~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      .++|+++|.+|+|||||+|+|++. ........+.++.+...  ...+   ..+.+|||||...          +..+. 
T Consensus        10 ~~~i~v~G~~~~GKssli~~l~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~----------~~~~~-   77 (180)
T 2g6b_A           10 AFKVMLVGDSGVGKTCLLVRFKDG-AFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQER----------FRSVT-   77 (180)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS-CCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC------------------
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhC-CCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHH----------HHHHH-
Confidence            468999999999999999999987 33223334444444322  1222   3689999999632          11222 


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHH-HHHHHHHHHHHhcCCCCCC
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLVQP  241 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~  241 (269)
                        ......+|++++|+|+........ ..++..+..   .+.|+++|+||+|+....... .....+.+   ..   ..+
T Consensus        78 --~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---~~---~~~  149 (180)
T 2g6b_A           78 --HAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAK---EY---GLP  149 (180)
T ss_dssp             ---CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHH---HH---TCC
T ss_pred             --HHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHH---Hc---CCe
Confidence              223345999999999875322221 234444433   468999999999998643211 11112221   11   468


Q ss_pred             eEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325          242 VMMVSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       242 vi~vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      ++++||++|.|+++++++|.+.+..
T Consensus       150 ~~~~Sa~~~~gi~~l~~~l~~~~~~  174 (180)
T 2g6b_A          150 FMETSAKTGLNVDLAFTAIAKELKR  174 (180)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999887653

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.86  E-value=4e-21  Score=151.90  Aligned_cols=154  Identities=12%  Similarity=0.032  Sum_probs=96.9

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe--eEEEeC---CcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~--~~~~~~---~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      .++|+++|.+|+|||||+|+|++..  ......+.++.+.  .....+   ..+.+|||||....          ..+..
T Consensus         7 ~~~i~v~G~~~~GKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~   74 (177)
T 1wms_A            7 LFKVILLGDGGVGKSSLMNRYVTNK--FDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF----------RSLRT   74 (177)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSC--CCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGG----------HHHHG
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCC--CCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhh----------hhhHH
Confidence            4789999999999999999999873  1222233333332  222222   37899999996321          22222


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh-------hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCC
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSL  238 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~-------~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  238 (269)
                         .....+|++++|+|......... ..++..+..       .+.|+++|+||+|+...........   +....  ..
T Consensus        75 ---~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~---~~~~~--~~  146 (177)
T 1wms_A           75 ---PFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQ---AWCRD--NG  146 (177)
T ss_dssp             ---GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHH---HHHHH--TT
T ss_pred             ---HHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHH---HHHHh--cC
Confidence               23345899999999875322211 223333322       4679999999999974322111111   11211  12


Q ss_pred             CCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          239 VQPVMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       239 ~~~vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      ..+++++||++|.|+++++++|.+.+.
T Consensus       147 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~  173 (177)
T 1wms_A          147 DYPYFETSAKDATNVAAAFEEAVRRVL  173 (177)
T ss_dssp             CCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             CceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            578999999999999999999988764

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.86  E-value=1.9e-21  Score=152.49  Aligned_cols=155  Identities=15%  Similarity=0.103  Sum_probs=102.2

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      .++|+++|.+|+|||||+|+|++........+..+++........   ...+.+|||||....          ..+...+
T Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~----------~~~~~~~   75 (170)
T 1z0j_A            6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERF----------RALAPMY   75 (170)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG----------GGGTHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhh----------hcccHhh
Confidence            368999999999999999999987422334455555544433332   356899999997331          1122233


Q ss_pred             HhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHH-HHHHHHHHHHHHhcCCCCCCeE
Q 024325          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDV-ARRAMQIEESLKANNSLVQPVM  243 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~vi  243 (269)
                      +.   .+|++++|+|+........ ..++..+..   ...|+++|+||+|+.+..+. ......+   ...   ...+++
T Consensus        76 ~~---~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~---~~~---~~~~~~  146 (170)
T 1z0j_A           76 YR---GSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDY---ADS---IHAIFV  146 (170)
T ss_dssp             HT---TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHH---HHH---TTCEEE
T ss_pred             Cc---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHH---HHH---cCCEEE
Confidence            33   3899999999875322222 234444443   35789999999999754322 1111111   111   246899


Q ss_pred             EeeCCCCCCHHHHHHHHHHhhh
Q 024325          244 MVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       244 ~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      ++||++|.|+++++++|.+.+.
T Consensus       147 ~~Sa~~~~~i~~l~~~i~~~i~  168 (170)
T 1z0j_A          147 ETSAKNAININELFIEISRRIP  168 (170)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHCC
T ss_pred             EEeCCCCcCHHHHHHHHHHHHh
Confidence            9999999999999999988764

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.86  E-value=8.8e-21  Score=147.74  Aligned_cols=151  Identities=17%  Similarity=0.161  Sum_probs=97.3

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee--EEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~--~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      ++|+++|.+|+|||||+|+|++..   .....++++.+..  ....   ...+.+|||||.....          .+...
T Consensus         4 ~~i~v~G~~~~GKssl~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~----------~~~~~   70 (166)
T 2ce2_X            4 YKLVVVGAGGVGKSALTIQLIQNH---FVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS----------AMRDQ   70 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSS---CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCC----------HHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCc---CccccCCccceEEEEEEEECCEEEEEEEEECCCchhhh----------HHHHH
Confidence            579999999999999999999872   2333333433321  1111   2457899999975421          11222


Q ss_pred             HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  242 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  242 (269)
                      ++..   +|.+++|+|+........ ..++..+..    .+.|+++|+||+|+.+..........+.+..      ..++
T Consensus        71 ~~~~---~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~  141 (166)
T 2ce2_X           71 YMRT---GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSY------GIPY  141 (166)
T ss_dssp             HHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHH------TCCE
T ss_pred             hhcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHc------CCeE
Confidence            2222   899999999874321111 233333332    2689999999999986432222222222221      4689


Q ss_pred             EEeeCCCCCCHHHHHHHHHHhhh
Q 024325          243 MMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       243 i~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      +++||++|.|+++++++|.+.+.
T Consensus       142 ~~~Sa~~~~gi~~l~~~l~~~~~  164 (166)
T 2ce2_X          142 IETSAKTRQGVEDAFYTLVREIR  164 (166)
T ss_dssp             EEECTTTCTTHHHHHHHHHHHHH
T ss_pred             EEecCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999988764

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.86  E-value=7e-21  Score=172.17  Aligned_cols=155  Identities=17%  Similarity=0.179  Sum_probs=107.2

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcCcCccc------------------------------cCCCCCceeEeeEEE---e
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVR------------------------------TSDKPGLTQTINFFK---L  136 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~------------------------------~s~~~gtt~~~~~~~---~  136 (269)
                      ...++|+++|++|+|||||+|+|++... ..                              ....+|+|.+..+..   .
T Consensus        15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~-~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~   93 (439)
T 3j2k_7           15 KEHVNVVFIGHVDAGKSTIGGQIMYLTG-MVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE   93 (439)
T ss_pred             CceeEEEEEeCCCCCHHHHHHHHHHHcC-CCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence            3457999999999999999999965411 11                              112367788765433   3


Q ss_pred             CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC-------cchHHHHHHHHhhCCc-EEE
Q 024325          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK-------PRDHELISLMERSQTK-YQV  208 (269)
Q Consensus       137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~-------~~~~~~~~~l~~~~~p-~ii  208 (269)
                      +..+.+|||||+.             .+..........+|++++|+|+..+..       .+..+.+..+...++| +++
T Consensus        94 ~~~~~iiDTPGh~-------------~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIv  160 (439)
T 3j2k_7           94 KKHFTILDAPGHK-------------SFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIV  160 (439)
T ss_pred             CeEEEEEECCChH-------------HHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEE
Confidence            6689999999972             233334444455999999999987754       4666777777777888 999


Q ss_pred             EEecCCCCCch----HHHHHHHHHHHHHHhcCC---CCCCeEEeeCCCCCCHHHHHH
Q 024325          209 VLTKTDTVFPI----DVARRAMQIEESLKANNS---LVQPVMMVSSKSGAGIRSLRT  258 (269)
Q Consensus       209 v~NK~Dl~~~~----~~~~~~~~~~~~~~~~~~---~~~~vi~vSa~~g~gi~~L~~  258 (269)
                      |+||+|+....    ........+.+.+.....   ...+++++||++|.|++++.+
T Consensus       161 viNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          161 LINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             EeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            99999997532    223333444444333221   146899999999999999554

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.86  E-value=1.4e-20  Score=152.59  Aligned_cols=156  Identities=14%  Similarity=0.081  Sum_probs=100.7

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee--EEEe-C--CcEEEEcCCCCCCcchhHHHHHHHHHH
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEEL  164 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~--~~~~-~--~~~~lvDtpG~~~~~~~~~~~~~~~~~  164 (269)
                      ...++|+++|.+|+|||||+|+|++..   ....+++|+.+..  .... +  ..+.+|||||....          ..+
T Consensus        12 ~~~~ki~v~G~~~~GKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~   78 (206)
T 2bov_A           12 LALHKVIMVGSGGVGKSALTLQFMYDE---FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY----------AAI   78 (206)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSC---CCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC----------HHH
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCC---CCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhh----------HHH
Confidence            345799999999999999999999873   3444555554432  1122 2  36899999997542          122


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCC
Q 024325          165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLV  239 (269)
Q Consensus       165 ~~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  239 (269)
                      ...++..   +|++++|+|......... ..++..+..    .++|+++|+||+|+.+..+..  ...+.......   .
T Consensus        79 ~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~~---~  150 (206)
T 2bov_A           79 RDNYFRS---GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS--VEEAKNRAEQW---N  150 (206)
T ss_dssp             HHHHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSC--HHHHHHHHHHH---T
T ss_pred             HHHHHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcccccccc--HHHHHHHHHHh---C
Confidence            2333332   899999999875321111 223333332    268999999999997532211  01111112211   3


Q ss_pred             CCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325          240 QPVMMVSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       240 ~~vi~vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      .+++++||++|.|+++++++|.+.+..
T Consensus       151 ~~~~~~Sa~~g~gi~~l~~~l~~~i~~  177 (206)
T 2bov_A          151 VNYVETSAKTRANVDKVFFDLMREIRA  177 (206)
T ss_dssp             CEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            689999999999999999999887643

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.86  E-value=3.7e-21  Score=150.20  Aligned_cols=152  Identities=14%  Similarity=0.104  Sum_probs=96.5

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee--EEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~--~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      .+|+++|.+|+|||||+|+|++..   ......+++.+..  ....   ...+.+|||||....          ..+...
T Consensus         4 ~~i~v~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~----------~~~~~~   70 (167)
T 1kao_A            4 YKVVVLGSGGVGKSALTVQFVTGT---FIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF----------ASMRDL   70 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC---CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC----------HHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHcCC---CcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhh----------HHHHHH
Confidence            589999999999999999999873   2233333433321  1122   234889999997442          122223


Q ss_pred             HHhcccccceEEEEEeCCCCCCcch-HHHHHHHH----hhCCcEEEEEecCCCCCchHHH-HHHHHHHHHHHhcCCCCCC
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLVQP  241 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~----~~~~p~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~  241 (269)
                      ++..   +|.+++|+|......... ..++..+.    ..+.|+++|+||+|+....+.. .....+.+   ..   ..+
T Consensus        71 ~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---~~---~~~  141 (167)
T 1kao_A           71 YIKN---GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAE---EW---GCP  141 (167)
T ss_dssp             HHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH---HH---TSC
T ss_pred             Hhcc---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHH---Hh---CCC
Confidence            3332   899999999875322111 12222222    2378999999999987532221 11111211   11   468


Q ss_pred             eEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325          242 VMMVSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       242 vi~vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      ++++||++|.|+++++++|.+.+..
T Consensus       142 ~~~~Sa~~~~gi~~l~~~l~~~~~~  166 (167)
T 1kao_A          142 FMETSAKSKTMVDELFAEIVRQMNY  166 (167)
T ss_dssp             EEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred             EEEecCCCCcCHHHHHHHHHHHHhh
Confidence            9999999999999999999887654

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.86  E-value=4.9e-21  Score=151.45  Aligned_cols=156  Identities=15%  Similarity=0.122  Sum_probs=99.0

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      .++|+++|.+|+|||||+|+|++........+..+.+........   ...+.+|||||....          ..+...+
T Consensus        15 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~~~   84 (179)
T 1z0f_A           15 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERF----------RAVTRSY   84 (179)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGT----------CHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHh----------hhhHHHH
Confidence            479999999999999999999987321112222233333333222   346899999996321          1222333


Q ss_pred             HhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEE
Q 024325          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM  244 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~  244 (269)
                      +.   .+|++++|+|+........ ..++..+..   .+.|+++|+||+|+.......  ...+.+....   ...++++
T Consensus        85 ~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~---~~~~~~~  156 (179)
T 1z0f_A           85 YR---GAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVT--YEEAKQFAEE---NGLLFLE  156 (179)
T ss_dssp             HH---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC--HHHHHHHHHH---TTCEEEE
T ss_pred             hc---cCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccC--HHHHHHHHHH---cCCEEEE
Confidence            33   3899999999875422222 233333433   468999999999996432211  1112222222   2468999


Q ss_pred             eeCCCCCCHHHHHHHHHHhhh
Q 024325          245 VSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       245 vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      +||++|.|+++++++|.+.+.
T Consensus       157 ~Sa~~~~gi~~l~~~l~~~i~  177 (179)
T 1z0f_A          157 ASAKTGENVEDAFLEAAKKIY  177 (179)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHC
T ss_pred             EeCCCCCCHHHHHHHHHHHHh
Confidence            999999999999999987653

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.86  E-value=4e-21  Score=150.25  Aligned_cols=153  Identities=14%  Similarity=0.065  Sum_probs=96.8

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE--EEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~--~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      .+|+++|.+|+|||||+|+|++..   ....+.+|+.+...  ...   +..+.+|||||.....          .+...
T Consensus         4 ~ki~v~G~~~~GKssli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~----------~~~~~   70 (167)
T 1c1y_A            4 YKLVVLGSGGVGKSALTVQFVQGI---FVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFT----------AMRDL   70 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCC---CCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSST----------THHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC---CCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHH----------HHHHH
Confidence            589999999999999999999862   23333334333211  111   2358899999975421          11222


Q ss_pred             HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  242 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  242 (269)
                      ++..   +|++++|+|......... ..++..+..    .+.|+++|+||+|+.+......  ..........  ...++
T Consensus        71 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~~~~--~~~~~  143 (167)
T 1c1y_A           71 YMKN---GQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGK--EQGQNLARQW--CNCAF  143 (167)
T ss_dssp             HHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCH--HHHHHHHHHT--TSCEE
T ss_pred             Hhcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCH--HHHHHHHHHc--cCCcE
Confidence            3222   899999999875321111 233333332    3789999999999975322110  1111112211  14789


Q ss_pred             EEeeCCCCCCHHHHHHHHHHhhh
Q 024325          243 MMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       243 i~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      +++||++|.|+++++++|.+.+.
T Consensus       144 ~~~Sa~~~~gi~~l~~~l~~~i~  166 (167)
T 1c1y_A          144 LESSAKSKINVNEIFYDLVRQIN  166 (167)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHHT
T ss_pred             EEecCCCCCCHHHHHHHHHHHHh
Confidence            99999999999999999988763

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.86  E-value=5.5e-21  Score=150.03  Aligned_cols=156  Identities=14%  Similarity=0.037  Sum_probs=96.9

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCc-cccCCCCCceeEeeEEE-eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGV-VRTSDKPGLTQTINFFK-LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~-~~~s~~~gtt~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~  169 (269)
                      .++|+++|.+|+|||||+|+|++.... ........++....... ....+.+|||||....          ..+...++
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~----------~~~~~~~~   72 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQF----------PAMQRLSI   72 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSC----------HHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhh----------HHHHHHhc
Confidence            368999999999999999999986311 11111111222211111 1346899999997542          12222333


Q ss_pred             hcccccceEEEEEeCCCCCCcc-hHHHHHHHHh-----hCCcEEEEEecCCCCCchHHHH-HHHHHHHHHHhcCCCCCCe
Q 024325          170 STRVSLKRVCLLIDTKWGVKPR-DHELISLMER-----SQTKYQVVLTKTDTVFPIDVAR-RAMQIEESLKANNSLVQPV  242 (269)
Q Consensus       170 ~~~~~~d~vl~vid~~~~~~~~-~~~~~~~l~~-----~~~p~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~v  242 (269)
                      ..   +|++++|+|++...... ...++..+..     .+.|+++|+||+|+.+..+... ....+..   ..   ..++
T Consensus        73 ~~---~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~---~~---~~~~  143 (172)
T 2erx_A           73 SK---GHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALAR---TW---KCAF  143 (172)
T ss_dssp             HH---CSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHH---HH---TCEE
T ss_pred             cc---CCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHH---Hh---CCeE
Confidence            32   89999999987532211 1234444433     2689999999999975432211 1111111   11   3689


Q ss_pred             EEeeCCCCCCHHHHHHHHHHhhhh
Q 024325          243 MMVSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       243 i~vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      +++||++|.|+++++++|.+.+..
T Consensus       144 ~~~Sa~~~~gi~~l~~~l~~~~~~  167 (172)
T 2erx_A          144 METSAKLNHNVKELFQELLNLEKR  167 (172)
T ss_dssp             EECBTTTTBSHHHHHHHHHHTCCS
T ss_pred             EEecCCCCcCHHHHHHHHHHHHhh
Confidence            999999999999999999987754

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.86  E-value=2.1e-21  Score=163.81  Aligned_cols=171  Identities=13%  Similarity=0.107  Sum_probs=112.4

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCC-ceeEeeE---EEeCCcEEEEcCCCCCCcchhHHHHHHHHHHH
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG-LTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~g-tt~~~~~---~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~  165 (269)
                      ...++|+++|.+|||||||+|+|++. .....+..+. +|.+...   ...+..+.+|||||+.+.....  ......+.
T Consensus        20 ~~~~~I~lvG~~g~GKStl~n~l~~~-~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~--~~~~~~i~   96 (260)
T 2xtp_A           20 RSELRIILVGKTGTGKSAAGNSILRK-QAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHC--EALYKEVQ   96 (260)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHTS-CCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCC--HHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhCC-CCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCH--HHHHHHHH
Confidence            34579999999999999999999987 4344444444 5665432   2336789999999986542211  11122333


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhh-----CCcEEEEEe-cCCCCCchHHHHHH-----HHHHHHHHh
Q 024325          166 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS-----QTKYQVVLT-KTDTVFPIDVARRA-----MQIEESLKA  234 (269)
Q Consensus       166 ~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~-----~~p~iiv~N-K~Dl~~~~~~~~~~-----~~~~~~~~~  234 (269)
                      ..+......+|++++|+|+.. +...+..++.++...     ..|.++|+| |+|+.... .....     ..+.+....
T Consensus        97 ~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~  174 (260)
T 2xtp_A           97 RCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKLVAA  174 (260)
T ss_dssp             HHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHHH
T ss_pred             HHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHHHHH
Confidence            344445566999999999984 666666676777654     568888888 99998542 22211     112222333


Q ss_pred             cCCC---CCCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325          235 NNSL---VQPVMMVSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       235 ~~~~---~~~vi~vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      +...   ..+ +++||++|.|+++|+++|.+.+..
T Consensus       175 ~~~~~~~~~~-~~~SA~~~~gv~~l~~~i~~~~~~  208 (260)
T 2xtp_A          175 CGGRICAFNN-RAEGSNQDDQVKELMDCIEDLLME  208 (260)
T ss_dssp             TTTCEEECCT-TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCCeEEEecC-cccccccHHHHHHHHHHHHHHHHh
Confidence            2211   122 789999999999999999988764

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.86  E-value=2e-21  Score=156.49  Aligned_cols=158  Identities=16%  Similarity=0.147  Sum_probs=97.3

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeC---CcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~---~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      ..++|+++|.+|+|||||+|+|++........+..+++........+   ..+.+|||||....          ..+...
T Consensus        25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~----------~~~~~~   94 (192)
T 2il1_A           25 FKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF----------NSITSA   94 (192)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGG----------HHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHH----------HHHHHH
Confidence            34689999999999999999999873111112222222222222222   46899999996321          122233


Q ss_pred             HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeE
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM  243 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi  243 (269)
                      ++..   +|++++|+|+.......+ ..++..+..   .+.|+++|+||+|+....+...  ....+.....  ...+++
T Consensus        95 ~~~~---~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~--~~~~~~~~~~--~~~~~~  167 (192)
T 2il1_A           95 YYRS---AKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITR--QQGEKFAQQI--TGMRFC  167 (192)
T ss_dssp             HHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCH--HHHHHHHHTS--TTCEEE
T ss_pred             HhcC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCH--HHHHHHHHhc--CCCeEE
Confidence            3332   899999999875332222 233344443   3689999999999975322211  1112222211  246899


Q ss_pred             EeeCCCCCCHHHHHHHHHHhhh
Q 024325          244 MVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       244 ~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      ++||++|.|+++++++|.+.+.
T Consensus       168 ~~SA~~g~gi~~l~~~l~~~i~  189 (192)
T 2il1_A          168 EASAKDNFNVDEIFLKLVDDIL  189 (192)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999988764

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.86  E-value=2.3e-21  Score=156.27  Aligned_cols=159  Identities=16%  Similarity=0.132  Sum_probs=96.2

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~  169 (269)
                      ...++|+++|.+|+|||||+|+|++.. .....+..+... ..+...+..+.+|||||....          ..+...++
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~-~~~~~~t~~~~~-~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~   94 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNV-ETVEYKNICFTVWDVGGQDKI----------RPLWRHYF   94 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCSSC-CEEEEEETTEEE-EEEEETTEEEEEEECC---------------CTTHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHhCC-ccccCCcCceeE-EEEEECCEEEEEEECCCCHhH----------HHHHHHHh
Confidence            345799999999999999999998763 222111111111 112223567999999997431          11222233


Q ss_pred             hcccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEE
Q 024325          170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM  244 (269)
Q Consensus       170 ~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~  244 (269)
                      .   .+|++++|+|+........ ..++..+..    .+.|+++|+||+|+............+..  ........++++
T Consensus        95 ~---~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~--~~~~~~~~~~~~  169 (192)
T 2b6h_A           95 Q---NTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGL--QHLRSRTWYVQA  169 (192)
T ss_dssp             H---TCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTG--GGCSSCCEEEEE
T ss_pred             c---cCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCc--ccccCCceEEEE
Confidence            2   3999999999975422111 122222222    36899999999999765333222221110  111122457899


Q ss_pred             eeCCCCCCHHHHHHHHHHhhh
Q 024325          245 VSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       245 vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      +||++|.|+++++++|.+.+.
T Consensus       170 ~SA~~g~gi~~l~~~l~~~i~  190 (192)
T 2b6h_A          170 TCATQGTGLYDGLDWLSHELS  190 (192)
T ss_dssp             CBTTTTBTHHHHHHHHHHHTT
T ss_pred             CcCCCcCCHHHHHHHHHHHHh
Confidence            999999999999999988764

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.86  E-value=2.9e-21  Score=151.51  Aligned_cols=153  Identities=16%  Similarity=0.179  Sum_probs=95.6

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee--EEEeC---CcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~--~~~~~---~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      .++|+++|.+|+|||||+|+|++..  ......++++.+..  ....+   ..+.+|||||.....          .+..
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~----------~~~~   70 (170)
T 1g16_A            3 IMKILLIGDSGVGKSCLLVRFVEDK--FNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFR----------TITT   70 (170)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCC--CCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTS----------CCCH
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCC--CCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhh----------hhHH
Confidence            3689999999999999999999873  22333344443332  22222   368999999963311          1112


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  242 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  242 (269)
                      .++   ..+|++++|+|+........ ..++..+..   .+.|+++|+||+|+............+.+.   .   ..++
T Consensus        71 ~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---~---~~~~  141 (170)
T 1g16_A           71 AYY---RGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKE---L---GIPF  141 (170)
T ss_dssp             HHH---TTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHH---H---TCCE
T ss_pred             HHh---ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHH---c---CCeE
Confidence            222   23899999999875322111 234444443   368999999999995432222222222221   1   3689


Q ss_pred             EEeeCCCCCCHHHHHHHHHHhhh
Q 024325          243 MMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       243 i~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      +++||++|.|+++++++|.+.+.
T Consensus       142 ~~~Sa~~~~gv~~l~~~l~~~~~  164 (170)
T 1g16_A          142 IESSAKNDDNVNEIFFTLAKLIQ  164 (170)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999988764

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.86  E-value=1.2e-20  Score=152.71  Aligned_cols=157  Identities=22%  Similarity=0.184  Sum_probs=94.8

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      ...++|+++|.+|+|||||+|+|++........+..+++........   ...+.+|||||....          ..+..
T Consensus        26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~~   95 (199)
T 2p5s_A           26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERF----------RSIAK   95 (199)
T ss_dssp             --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTC----------HHHHH
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcch----------hhhHH
Confidence            34579999999999999999999987322223333343333322222   345899999997432          12222


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchH------H-HHHHHHHHHHHHhc
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPID------V-ARRAMQIEESLKAN  235 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~------~-~~~~~~~~~~~~~~  235 (269)
                      .++..   +|++++|+|+........ ..++..+..   .+.|+++|+||+|+.....      . ......+   ....
T Consensus        96 ~~~~~---~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~---~~~~  169 (199)
T 2p5s_A           96 SYFRK---ADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKL---AMTY  169 (199)
T ss_dssp             HHHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHH---HHHH
T ss_pred             HHHhh---CCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHH---HHHc
Confidence            33332   899999999875322222 234444443   3689999999999863211      0 1111111   1111


Q ss_pred             CCCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          236 NSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       236 ~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                         ..+++++||++|.|+++++++|.+.+.
T Consensus       170 ---~~~~~~~SA~~g~gv~el~~~l~~~i~  196 (199)
T 2p5s_A          170 ---GALFCETSAKDGSNIVEAVLHLAREVK  196 (199)
T ss_dssp             ---TCEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             ---CCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence               468999999999999999999988764

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.86  E-value=6.3e-22  Score=158.66  Aligned_cols=160  Identities=20%  Similarity=0.155  Sum_probs=101.9

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHh
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~  170 (269)
                      ..++|+++|.+|+|||||+|+|++. ......+..+.+.. .....+..+.+|||||......          +   ...
T Consensus        21 ~~~~i~v~G~~~~GKssli~~l~~~-~~~~~~~t~~~~~~-~~~~~~~~~~~~Dt~G~~~~~~----------~---~~~   85 (189)
T 2x77_A           21 RKIRVLMLGLDNAGKTSILYRLHLG-DVVTTVPTVGVNLE-TLQYKNISFEVWDLGGQTGVRP----------Y---WRC   85 (189)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCS-CCEEECSSTTCCEE-EEEETTEEEEEEEECCSSSSCC----------C---CSS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcC-CCCCcCCCCceEEE-EEEECCEEEEEEECCCCHhHHH----------H---HHH
Confidence            3579999999999999999999876 32322332232221 1222367799999999743211          0   111


Q ss_pred             cccccceEEEEEeCCCCCCcch--HHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEe
Q 024325          171 TRVSLKRVCLLIDTKWGVKPRD--HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV  245 (269)
Q Consensus       171 ~~~~~d~vl~vid~~~~~~~~~--~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v  245 (269)
                      ....+|++++|+|++++.....  ..+...+..   .+.|+++|+||+|+.......+....+.  .........+++++
T Consensus        86 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  163 (189)
T 2x77_A           86 YFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLG--VSSIMNRTWTIVKS  163 (189)
T ss_dssp             SSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTT--GGGCCSSCEEEEEC
T ss_pred             HhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhC--hhhccCCceEEEEc
Confidence            2335999999999986432221  222222222   3689999999999987643322222111  01112224579999


Q ss_pred             eCCCCCCHHHHHHHHHHhhhhh
Q 024325          246 SSKSGAGIRSLRTVLSKIARFA  267 (269)
Q Consensus       246 Sa~~g~gi~~L~~~i~~~~~~~  267 (269)
                      ||++|.|+++++++|.+.+...
T Consensus       164 Sa~~~~gi~~l~~~l~~~i~~~  185 (189)
T 2x77_A          164 SSKTGDGLVEGMDWLVERLREQ  185 (189)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHHT
T ss_pred             cCCCccCHHHHHHHHHHHHHhc
Confidence            9999999999999999887654

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.86  E-value=8.3e-22  Score=159.64  Aligned_cols=154  Identities=18%  Similarity=0.164  Sum_probs=94.6

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhc
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST  171 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~  171 (269)
                      ..+|+++|.+|||||||+|+|++. ......+..+.+.. .+...+..+.+|||||....          ..+...|   
T Consensus        25 ~~ki~lvG~~~vGKSsLi~~l~~~-~~~~~~~t~~~~~~-~~~~~~~~l~i~Dt~G~~~~----------~~~~~~~---   89 (198)
T 1f6b_A           25 TGKLVFLGLDNAGKTTLLHMLKDD-RLGQHVPTLHPTSE-ELTIAGMTFTTFDLGGHIQA----------RRVWKNY---   89 (198)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCE-EEEETTEEEEEEEECC--------------CCGGGGG---
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcC-CCCccCCCCCceeE-EEEECCEEEEEEECCCcHhh----------HHHHHHH---
Confidence            358999999999999999999987 33333343343322 22223568999999996431          1111122   


Q ss_pred             ccccceEEEEEeCCCCCCcch-HHHHHHHH----hhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcC----------
Q 024325          172 RVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANN----------  236 (269)
Q Consensus       172 ~~~~d~vl~vid~~~~~~~~~-~~~~~~l~----~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~----------  236 (269)
                      ...+|++++|+|+........ ..++..+.    ..++|+++|+||+|+......++.    .+.+....          
T Consensus        90 ~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~----~~~~~~~~~~~~~~~~~~  165 (198)
T 1f6b_A           90 LPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERL----REMFGLYGQTTGKGSVSL  165 (198)
T ss_dssp             GGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHH----HHHHTCTTTCCCSSCCCT
T ss_pred             HhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHH----HHHhCccccccccccccc
Confidence            234899999999975322111 22233232    146899999999999763222222    22222110          


Q ss_pred             ----CCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325          237 ----SLVQPVMMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       237 ----~~~~~vi~vSa~~g~gi~~L~~~i~~~~  264 (269)
                          ....+++++||++|+|+++++++|.+.+
T Consensus       166 ~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l  197 (198)
T 1f6b_A          166 KELNARPLEVFMCSVLKRQGYGEGFRWMAQYI  197 (198)
T ss_dssp             TTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             ccccCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence                1245799999999999999999998754

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.86  E-value=4.6e-21  Score=150.18  Aligned_cols=153  Identities=13%  Similarity=0.098  Sum_probs=97.5

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~  169 (269)
                      .+|+++|.+|+|||||+|+|++........+..+.+........   ...+.+|||||....          ..+...++
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~----------~~~~~~~~   73 (170)
T 1ek0_A            4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERF----------ASLAPXYY   73 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG----------GGGHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhh----------hhhhhhhh
Confidence            58999999999999999999987322222333344333333332   336899999996431          11222333


Q ss_pred             hcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCch---HH-HHHHHHHHHHHHhcCCCCCC
Q 024325          170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPI---DV-ARRAMQIEESLKANNSLVQP  241 (269)
Q Consensus       170 ~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~---~~-~~~~~~~~~~~~~~~~~~~~  241 (269)
                      .   .+|++++|+|++....... ..++..+..   .+.|+++|+||+|+....   .. ......+.   ...   ..+
T Consensus        74 ~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~---~~~---~~~  144 (170)
T 1ek0_A           74 R---NAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLA---EEK---GLL  144 (170)
T ss_dssp             T---TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHH---HHH---TCE
T ss_pred             c---cCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHH---HHc---CCE
Confidence            3   3899999999875322111 223333332   368999999999997541   11 11111111   111   468


Q ss_pred             eEEeeCCCCCCHHHHHHHHHHhh
Q 024325          242 VMMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       242 vi~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      ++++||++|.|+++++++|.+.+
T Consensus       145 ~~~~Sa~~~~gi~~l~~~l~~~i  167 (170)
T 1ek0_A          145 FFETSAKTGENVNDVFLGIGEKI  167 (170)
T ss_dssp             EEECCTTTCTTHHHHHHHHHTTS
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHH
Confidence            99999999999999999998765

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.86  E-value=5.9e-21  Score=153.52  Aligned_cols=155  Identities=17%  Similarity=0.160  Sum_probs=101.5

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee--EEEe-C--CcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~--~~~~-~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      .++|+++|.+|+|||||+|+|++..  ......++++.+..  .... +  ..+.+|||||....          ..+..
T Consensus        16 ~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~   83 (196)
T 3tkl_A           16 LFKLLLIGDSGVGKSCLLLRFADDT--YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF----------RTITS   83 (196)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC--CCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG----------CTTHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCC--CCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhh----------hhhHH
Confidence            4789999999999999999999873  23344455554443  2222 2  46899999996332          11222


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcc-hHHHHHHHHhh---CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  242 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~-~~~~~~~l~~~---~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  242 (269)
                      .++.   .+|++++|+|+....... -..++..+...   +.|+++|+||+|+.........  ........   ...++
T Consensus        84 ~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~--~~~~~~~~---~~~~~  155 (196)
T 3tkl_A           84 SYYR---GAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYT--TAKEFADS---LGIPF  155 (196)
T ss_dssp             HHHT---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHH--HHHHHHHH---TTCCE
T ss_pred             HHHh---hCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHH--HHHHHHHH---cCCcE
Confidence            3333   389999999987532211 12344444433   6899999999999865322111  11111111   24689


Q ss_pred             EEeeCCCCCCHHHHHHHHHHhhhh
Q 024325          243 MMVSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       243 i~vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      +++||++|.|+++++++|.+.+..
T Consensus       156 ~~~Sa~~g~gv~~l~~~l~~~i~~  179 (196)
T 3tkl_A          156 LETSAKNATNVEQSFMTMAAEIKK  179 (196)
T ss_dssp             EEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999887653

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.86  E-value=1.7e-20  Score=146.58  Aligned_cols=153  Identities=13%  Similarity=0.061  Sum_probs=96.5

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEEe--CCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      .++|+++|.+|+|||||+|+|++..   ....+++++.+..   ....  ...+.+|||||....          ..+..
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~----------~~~~~   70 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMYDE---FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY----------AAIRD   70 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC---CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---C----------HHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCc---cCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchh----------HHHHH
Confidence            3689999999999999999999873   2344444443322   1111  236899999996432          22223


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCC
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP  241 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (269)
                      .++..   +|++++|+|+........ ..++..+..    .+.|+++|+||+|+.+..+...  ..........   ..+
T Consensus        71 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~~~~---~~~  142 (168)
T 1u8z_A           71 NYFRS---GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSV--EEAKNRADQW---NVN  142 (168)
T ss_dssp             HHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCH--HHHHHHHHHH---TCE
T ss_pred             HHhhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCH--HHHHHHHHHc---CCe
Confidence            33332   899999999874321111 223333322    3689999999999975322110  1111112111   468


Q ss_pred             eEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          242 VMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       242 vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      ++++||++|.|+++++++|.+.+.
T Consensus       143 ~~~~Sa~~~~gi~~l~~~l~~~i~  166 (168)
T 1u8z_A          143 YVETSAKTRANVDKVFFDLMREIR  166 (168)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999988764

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.86  E-value=2.9e-21  Score=152.99  Aligned_cols=155  Identities=15%  Similarity=0.100  Sum_probs=100.1

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE--EEe---CCcEEEEcCCCCCCcchhHHHHHHHHHH
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL---GTKLCLVDLPGYGFAYAKEEVKDAWEEL  164 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~--~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~  164 (269)
                      ...++|+++|.+|+|||||+|+|++.   .....+++|+.+...  ...   ...+.+|||||.....          .+
T Consensus         7 ~~~~~i~v~G~~~~GKssli~~l~~~---~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~----------~~   73 (181)
T 2fn4_A            7 SETHKLVVVGGGGVGKSALTIQFIQS---YFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFG----------AM   73 (181)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHS---SCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTS----------CC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC---cCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhH----------HH
Confidence            34579999999999999999999987   234555555544321  122   2468899999975321          11


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCcch-HHHHHHH-H---hhCCcEEEEEecCCCCCchHHH-HHHHHHHHHHHhcCCC
Q 024325          165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLM-E---RSQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSL  238 (269)
Q Consensus       165 ~~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l-~---~~~~p~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~  238 (269)
                      ...++..   +|++++|+|......... ..++..+ .   ..+.|+++|+||+|+....... .....+   ...   .
T Consensus        74 ~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~---~~~---~  144 (181)
T 2fn4_A           74 REQYMRA---GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAF---GAS---H  144 (181)
T ss_dssp             HHHHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHH---HHH---T
T ss_pred             HHHHHhh---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHH---HHH---c
Confidence            1222222   899999999875221111 1222222 2   2468999999999997532221 111111   111   2


Q ss_pred             CCCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325          239 VQPVMMVSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       239 ~~~vi~vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      ..+++++||++|.|+++++++|.+.+..
T Consensus       145 ~~~~~~~Sa~~~~gv~~l~~~l~~~~~~  172 (181)
T 2fn4_A          145 HVAYFEASAKLRLNVDEAFEQLVRAVRK  172 (181)
T ss_dssp             TCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             CCeEEEecCCCCCCHHHHHHHHHHHHHH
Confidence            4689999999999999999999887653

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.85  E-value=2e-21  Score=153.96  Aligned_cols=155  Identities=15%  Similarity=0.131  Sum_probs=99.7

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE--EEe-C--CcEEEEcCCCCCCcchhHHHHHHHHHHH
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~--~~~-~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~  165 (269)
                      ..++|+++|.+|+|||||+|+|++..  ......++++.+...  ... +  ..+.+|||||.....          .+.
T Consensus         8 ~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~   75 (181)
T 3tw8_B            8 HLFKLLIIGDSGVGKSSLLLRFADNT--FSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFR----------TIT   75 (181)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHCSCC-----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCS----------SCC
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCC--CCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhh----------hhH
Confidence            45799999999999999999999873  224445555555432  222 3  468999999953211          111


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHhh--CCcEEEEEecCCCCCchHHH-HHHHHHHHHHHhcCCCCCC
Q 024325          166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLVQP  241 (269)
Q Consensus       166 ~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~  241 (269)
                      .   .....+|++++|+|++.+..... ..++..+...  +.|+++|+||+|+....... .....+.   ...   ..+
T Consensus        76 ~---~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~---~~~---~~~  146 (181)
T 3tw8_B           76 S---TYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFA---GQM---GIQ  146 (181)
T ss_dssp             G---GGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHH---HHH---TCC
T ss_pred             H---HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHH---HHc---CCe
Confidence            1   12334899999999975322111 2233444333  58999999999987542211 1111111   111   468


Q ss_pred             eEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325          242 VMMVSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       242 vi~vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      ++++||++|.|+++++++|.+.+..
T Consensus       147 ~~~~Sa~~~~gi~~l~~~l~~~~~~  171 (181)
T 3tw8_B          147 LFETSAKENVNVEEMFNCITELVLR  171 (181)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999887654

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.85  E-value=7.7e-21  Score=150.81  Aligned_cols=157  Identities=12%  Similarity=0.084  Sum_probs=98.4

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      .++|+++|.+|+|||||+|+|++........+..+++........   ...+.+|||||....          ..+...+
T Consensus        12 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~   81 (181)
T 2efe_B           12 NAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY----------HSLAPMY   81 (181)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGG----------GGGTHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhh----------hhhhHHH
Confidence            468999999999999999999987311111122222222222222   347899999996431          1122233


Q ss_pred             HhcccccceEEEEEeCCCCCCcc-hHHHHHHHHhh---CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEE
Q 024325          169 VSTRVSLKRVCLLIDTKWGVKPR-DHELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM  244 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~~~~~~-~~~~~~~l~~~---~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~  244 (269)
                      +.   .+|++++|+|++...... ...++..+...   +.|+++|+||+|+........  ..+.+....   ...++++
T Consensus        82 ~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~--~~~~~~~~~---~~~~~~~  153 (181)
T 2efe_B           82 YR---GAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTA--EDAQTYAQE---NGLFFME  153 (181)
T ss_dssp             HT---TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCH--HHHHHHHHH---TTCEEEE
T ss_pred             hc---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCH--HHHHHHHHH---cCCEEEE
Confidence            32   389999999987532211 13444444443   688999999999975432111  111222222   2468999


Q ss_pred             eeCCCCCCHHHHHHHHHHhhhh
Q 024325          245 VSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       245 vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      +||++|.|+++++++|.+.+..
T Consensus       154 ~Sa~~g~gi~~l~~~l~~~~~~  175 (181)
T 2efe_B          154 TSAKTATNVKEIFYEIARRLPR  175 (181)
T ss_dssp             CCSSSCTTHHHHHHHHHHTCC-
T ss_pred             EECCCCCCHHHHHHHHHHHHHh
Confidence            9999999999999999887643

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.85  E-value=5.2e-21  Score=155.94  Aligned_cols=155  Identities=18%  Similarity=0.216  Sum_probs=99.0

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee--EEEe-C--CcEEEEcCCCCCCcchhHHHHHHHHHH
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEEL  164 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~--~~~~-~--~~~~lvDtpG~~~~~~~~~~~~~~~~~  164 (269)
                      ...++|+++|.+|+|||||+|+|++..  ......++++.+..  .... +  ..+.+|||||....          ..+
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~   85 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFVEDK--FNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERF----------RTI   85 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHCC--CCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGG----------TCC
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCC--CCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHH----------HHH
Confidence            345799999999999999999999873  22333344444432  2222 2  46899999996321          111


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHhh---CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCC
Q 024325          165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ  240 (269)
Q Consensus       165 ~~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~~---~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  240 (269)
                      ...++.   .+|++++|+|+........ ..++..+...   +.|+++|+||+|+............+....      ..
T Consensus        86 ~~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~------~~  156 (213)
T 3cph_A           86 TTAYYR---GAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKEL------GI  156 (213)
T ss_dssp             CHHHHT---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHH------TC
T ss_pred             HHHHhc---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHc------CC
Confidence            122222   3899999999875322111 2344444432   689999999999954322112222222211      36


Q ss_pred             CeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          241 PVMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       241 ~vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      +++++||++|.|+++++++|.+.+.
T Consensus       157 ~~~~~Sa~~~~gi~~l~~~l~~~~~  181 (213)
T 3cph_A          157 PFIESSAKNDDNVNEIFFTLAKLIQ  181 (213)
T ss_dssp             CEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            8999999999999999999987664

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.85  E-value=6.9e-21  Score=150.98  Aligned_cols=155  Identities=14%  Similarity=0.135  Sum_probs=93.2

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe--eEEEe----CCcEEEEcCCCCCCcchhHHHHHHHHHH
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEEL  164 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~--~~~~~----~~~~~lvDtpG~~~~~~~~~~~~~~~~~  164 (269)
                      ..++|+++|.+|+|||||+|+|++.. . .....+.++.+.  .....    ...+.+|||||...          +..+
T Consensus         7 ~~~~i~v~G~~~~GKSsli~~l~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~   74 (182)
T 1ky3_A            7 NILKVIILGDSGVGKTSLMHRYVNDK-Y-SQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQER----------FQSL   74 (182)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSC-C-CTTC---CCCSCEEEEECCSSSCCEEEEEECCC------------------
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCc-C-CcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChH----------hhhh
Confidence            45799999999999999999999873 1 112222222222  22221    23689999999522          1112


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh-------hCCcEEEEEecCCCCCchH--HHHHHHHHHHHHHh
Q 024325          165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-------SQTKYQVVLTKTDTVFPID--VARRAMQIEESLKA  234 (269)
Q Consensus       165 ~~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~-------~~~p~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~  234 (269)
                         .......+|++++|+|+........ ..++..+..       .+.|+++|+||+|+.....  .......+   ...
T Consensus        75 ---~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~---~~~  148 (182)
T 1ky3_A           75 ---GVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQEL---AKS  148 (182)
T ss_dssp             -----CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHH---HHH
T ss_pred             ---hHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHH---HHh
Confidence               2233445999999999875322111 233333322       4679999999999964321  11111112   111


Q ss_pred             cCCCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          235 NNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       235 ~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                        ....+++++||++|.|+++++++|.+.+.
T Consensus       149 --~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  177 (182)
T 1ky3_A          149 --LGDIPLFLTSAKNAINVDTAFEEIARSAL  177 (182)
T ss_dssp             --TTSCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             --cCCCeEEEEecCCCCCHHHHHHHHHHHHH
Confidence              12578999999999999999999988664

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.85  E-value=3.9e-21  Score=154.64  Aligned_cols=157  Identities=15%  Similarity=0.085  Sum_probs=103.7

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      .++|+++|.+|+|||||+|+|++........+.++++........   +..+.+|||||....          ..+...+
T Consensus        23 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~   92 (192)
T 2fg5_A           23 ELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERF----------HSLAPMY   92 (192)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGG----------GGGTHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhh----------HhhhHHh
Confidence            468999999999999999999987322345566666655543332   346899999996431          1122233


Q ss_pred             HhcccccceEEEEEeCCCCCCcch-HHHHHHHHhh---CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEE
Q 024325          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM  244 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~~---~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~  244 (269)
                      +.   .+|++++|+|+........ ..++..+...   +.|+++|+||+|+.+.....  .+.+.+....   ...++++
T Consensus        93 ~~---~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~--~~~~~~~~~~---~~~~~~~  164 (192)
T 2fg5_A           93 YR---GSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVP--LKDAKEYAES---IGAIVVE  164 (192)
T ss_dssp             HT---TCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC--HHHHHHHHHT---TTCEEEE
T ss_pred             hc---cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccC--HHHHHHHHHH---cCCEEEE
Confidence            33   3899999999875322111 2344444432   68999999999997422211  1112222222   2478999


Q ss_pred             eeCCCCCCHHHHHHHHHHhhhh
Q 024325          245 VSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       245 vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      +||++|.|+++++++|.+.+..
T Consensus       165 ~Sa~~~~gi~~l~~~l~~~i~~  186 (192)
T 2fg5_A          165 TSAKNAINIEELFQGISRQIPP  186 (192)
T ss_dssp             CBTTTTBSHHHHHHHHHHTCC-
T ss_pred             EeCCCCcCHHHHHHHHHHHHHh
Confidence            9999999999999999887643

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.85  E-value=2e-20  Score=149.84  Aligned_cols=153  Identities=18%  Similarity=0.109  Sum_probs=97.7

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEE-e-----------CCcEEEEcCCCCCCcchhHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFK-L-----------GTKLCLVDLPGYGFAYAKEE  156 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~-~-----------~~~~~lvDtpG~~~~~~~~~  156 (269)
                      .++|+++|.+|+|||||+|+|++.. . .....+....+..   ... .           ...+.+|||||....     
T Consensus        11 ~~ki~v~G~~~~GKSsli~~l~~~~-~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-----   83 (195)
T 3bc1_A           11 LIKFLALGDSGVGKTSVLYQYTDGK-F-NSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERF-----   83 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC-C-CCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGG-----
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCC-C-CcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHH-----
Confidence            4789999999999999999999863 1 1122222222221   111 1           236899999997321     


Q ss_pred             HHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHH-HHHHHHHHH
Q 024325          157 VKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDV-ARRAMQIEE  230 (269)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~-~~~~~~~~~  230 (269)
                           ..+...   ....+|++++|+|+........ ..++..+..    .+.|+++|+||+|+...... ......+. 
T Consensus        84 -----~~~~~~---~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-  154 (195)
T 3bc1_A           84 -----RSLTTA---FFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELA-  154 (195)
T ss_dssp             -----HHHHHH---TTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHH-
T ss_pred             -----HHHHHH---HHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHH-
Confidence                 222222   3345999999999875322222 234444443    46899999999999753221 11112221 


Q ss_pred             HHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          231 SLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       231 ~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                        ...   ..+++++||++|.|+++++++|.+.+.
T Consensus       155 --~~~---~~~~~~~Sa~~~~~v~~l~~~l~~~~~  184 (195)
T 3bc1_A          155 --EKY---GIPYFETSAANGTNISHAIEMLLDLIM  184 (195)
T ss_dssp             --HHH---TCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             --HHc---CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence              111   368999999999999999999988764

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.85  E-value=1.4e-20  Score=152.48  Aligned_cols=155  Identities=17%  Similarity=0.129  Sum_probs=99.4

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      .++|+++|.+|+|||||+|+|++........+..+++........   ...+.+|||||....          ..+...+
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~~~   77 (203)
T 1zbd_A            8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERY----------RTITTAY   77 (203)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG----------HHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhh----------cchHHHh
Confidence            468999999999999999999987311112233333333332222   347899999997321          2222222


Q ss_pred             HhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHH-HHHHHHHHHHHHhcCCCCCCeE
Q 024325          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDV-ARRAMQIEESLKANNSLVQPVM  243 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~vi  243 (269)
                         ...+|++++|+|+........ ..++..+..   .+.|+++|+||+|+...... ......+.+.+      ..+++
T Consensus        78 ---~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~------~~~~~  148 (203)
T 1zbd_A           78 ---YRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHL------GFEFF  148 (203)
T ss_dssp             ---GGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHH------TCEEE
T ss_pred             ---hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHC------CCeEE
Confidence               344999999999875322111 234444443   36899999999999764221 11112222211      36899


Q ss_pred             EeeCCCCCCHHHHHHHHHHhhh
Q 024325          244 MVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       244 ~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      ++||++|.|+++++++|.+.+.
T Consensus       149 ~~Sa~~~~gi~~l~~~l~~~i~  170 (203)
T 1zbd_A          149 EASAKDNINVKQTFERLVDVIC  170 (203)
T ss_dssp             ECBTTTTBSSHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999987653

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.85  E-value=2.2e-21  Score=154.32  Aligned_cols=159  Identities=18%  Similarity=0.144  Sum_probs=100.2

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHh
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~  170 (269)
                      ..++|+++|.+|+|||||+|+|++. ......+..+.+... +...+..+.+|||||.....          .+   ...
T Consensus        17 ~~~~i~v~G~~~~GKssli~~l~~~-~~~~~~~t~~~~~~~-~~~~~~~~~i~Dt~G~~~~~----------~~---~~~   81 (183)
T 1moz_A           17 KELRILILGLDGAGKTTILYRLQIG-EVVTTKPTIGFNVET-LSYKNLKLNVWDLGGQTSIR----------PY---WRC   81 (183)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCS-EEEEECSSTTCCEEE-EEETTEEEEEEEEC----CC----------TT---GGG
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcC-CcCccCCcCccceEE-EEECCEEEEEEECCCCHhHH----------HH---HHH
Confidence            4579999999999999999999976 334444544433222 22236779999999974321          11   112


Q ss_pred             cccccceEEEEEeCCCCCCcch-HHHHHHHH----hhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEe
Q 024325          171 TRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV  245 (269)
Q Consensus       171 ~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~----~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v  245 (269)
                      ....+|++++|+|++....... ..++..+.    ..+.|+++|+||+|+............+.  .........+++++
T Consensus        82 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~--~~~~~~~~~~~~~~  159 (183)
T 1moz_A           82 YYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELN--LVELKDRSWSIVAS  159 (183)
T ss_dssp             TTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTT--TTTCCSSCEEEEEE
T ss_pred             HhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhC--cccccCCceEEEEc
Confidence            2345999999999875432222 12233332    24689999999999986533322222111  00111223579999


Q ss_pred             eCCCCCCHHHHHHHHHHhhhh
Q 024325          246 SSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       246 Sa~~g~gi~~L~~~i~~~~~~  266 (269)
                      ||++|.|+++++++|.+.+..
T Consensus       160 Sa~~~~gi~~l~~~l~~~~~~  180 (183)
T 1moz_A          160 SAIKGEGITEGLDWLIDVIKE  180 (183)
T ss_dssp             BGGGTBTHHHHHHHHHHHHHH
T ss_pred             cCCCCcCHHHHHHHHHHHHHh
Confidence            999999999999999887653

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.85  E-value=2.2e-20  Score=149.67  Aligned_cols=153  Identities=15%  Similarity=0.122  Sum_probs=96.2

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee--EEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~--~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      ++|+++|.+|+|||||+|+|++..   ....+.+++.+..  ....   ...+.+|||||...          +..+...
T Consensus        22 ~ki~vvG~~~~GKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~~   88 (190)
T 3con_A           22 YKLVVVGAGGVGKSALTIQLIQNH---FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE----------YSAMRDQ   88 (190)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSS---CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC--------------------
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC---CccccCCccceEEEEEEEECCEEEEEEEEECCChHH----------HHHHHHH
Confidence            689999999999999999999872   2344444444332  1111   23488999999632          1222223


Q ss_pred             HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  242 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  242 (269)
                      +   ...+|++++|+|........+ ..++..+..    .+.|+++|+||+|+............+.+.   .   ..++
T Consensus        89 ~---~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~---~---~~~~  159 (190)
T 3con_A           89 Y---MRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKS---Y---GIPF  159 (190)
T ss_dssp             ----CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHH---H---TCCE
T ss_pred             h---hCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHH---c---CCeE
Confidence            2   334999999999875322111 223333332    368999999999997632212222222221   1   3689


Q ss_pred             EEeeCCCCCCHHHHHHHHHHhhhhh
Q 024325          243 MMVSSKSGAGIRSLRTVLSKIARFA  267 (269)
Q Consensus       243 i~vSa~~g~gi~~L~~~i~~~~~~~  267 (269)
                      +++||++|.|+++++++|.+.+...
T Consensus       160 ~~~Sa~~~~gi~~l~~~l~~~~~~~  184 (190)
T 3con_A          160 IETSAKTRQGVEDAFYTLVREIRQY  184 (190)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999877654

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.85  E-value=6.8e-21  Score=149.22  Aligned_cols=156  Identities=15%  Similarity=0.079  Sum_probs=98.8

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      .++|+++|.+|+|||||+|+|++........+..+++........   +..+.+|||||....          ..+...+
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~----------~~~~~~~   75 (170)
T 1r2q_A            6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY----------HSLAPMY   75 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG----------GGGHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHh----------hhhhHHh
Confidence            368999999999999999999986322222333444443332222   456899999997431          1122233


Q ss_pred             HhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEE
Q 024325          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM  244 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~  244 (269)
                      +.   .+|++++|+|++....... ..++..+..   .+.|+++|+||+|+........  ....+....   ...++++
T Consensus        76 ~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~--~~~~~~~~~---~~~~~~~  147 (170)
T 1r2q_A           76 YR---GAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDF--QEAQSYADD---NSLLFME  147 (170)
T ss_dssp             HT---TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCH--HHHHHHHHH---TTCEEEE
T ss_pred             cc---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCH--HHHHHHHHH---cCCeEEE
Confidence            32   3899999999875322111 233333433   2678999999999965322110  111111221   2468999


Q ss_pred             eeCCCCCCHHHHHHHHHHhhh
Q 024325          245 VSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       245 vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      +||++|.|+++++++|.+.+.
T Consensus       148 ~Sa~~g~gi~~l~~~i~~~~~  168 (170)
T 1r2q_A          148 TSAKTSMNVNEIFMAIAKKLP  168 (170)
T ss_dssp             CCTTTCTTHHHHHHHHHHTSC
T ss_pred             EeCCCCCCHHHHHHHHHHHHh
Confidence            999999999999999988654

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.85  E-value=1.8e-20  Score=151.19  Aligned_cols=153  Identities=17%  Similarity=0.168  Sum_probs=96.2

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE--EEe-C------------------------------
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL-G------------------------------  137 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~--~~~-~------------------------------  137 (269)
                      ..++|+++|.+|+|||||+|+|++.. . .....+.+..+...  ... +                              
T Consensus         6 ~~~ki~v~G~~~~GKSsli~~l~~~~-~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (208)
T 3clv_A            6 SSYKTVLLGESSVGKSSIVLRLTKDT-F-HENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH   83 (208)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHSC-C-CSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCc-C-CCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence            45799999999999999999999873 1 11222222222211  111 1                              


Q ss_pred             ---------CcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh-hCCcE
Q 024325          138 ---------TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-SQTKY  206 (269)
Q Consensus       138 ---------~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~-~~~p~  206 (269)
                               ..+.+|||||....          ..+...++.   .+|++++|+|++.+....+ ..++..+.. .+.|+
T Consensus        84 ~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~~---~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~pi  150 (208)
T 3clv_A           84 NNYNENLCNIKFDIWDTAGQERY----------ASIVPLYYR---GATCAIVVFDISNSNTLDRAKTWVNQLKISSNYII  150 (208)
T ss_dssp             -CCCTTTCEEEEEEEECTTGGGC----------TTTHHHHHT---TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEE
T ss_pred             ccccCccceeEEEEEECCCcHHH----------HHHHHHHhc---CCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcE
Confidence                     56899999996332          112223333   3899999999875422222 233343433 46899


Q ss_pred             EEEEecCCCCCch-HHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          207 QVVLTKTDTVFPI-DVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       207 iiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      ++|+||+|+.... ....    +.+....   ...+++++||++|.|+++++++|.+.+.
T Consensus       151 ilv~NK~D~~~~~~~~~~----~~~~~~~---~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  203 (208)
T 3clv_A          151 ILVANKIDKNKFQVDILE----VQKYAQD---NNLLFIQTSAKTGTNIKNIFYMLAEEIY  203 (208)
T ss_dssp             EEEEECTTCC-CCSCHHH----HHHHHHH---TTCEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEEECCCcccccCCHHH----HHHHHHH---cCCcEEEEecCCCCCHHHHHHHHHHHHH
Confidence            9999999932211 1122    2222222   2468999999999999999999987664

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.85  E-value=2.6e-21  Score=155.78  Aligned_cols=156  Identities=13%  Similarity=-0.039  Sum_probs=98.7

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEEe--CCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      .++|+++|.+|+|||||+|+|++..   ....+.+|+.+..   ....  ...+.+|||||....          ..+. 
T Consensus        23 ~~ki~~vG~~~~GKSsl~~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~-   88 (194)
T 3reg_A           23 ALKIVVVGDGAVGKTCLLLAFSKGE---IPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEY----------DRLR-   88 (194)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC---CCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG----------TTTG-
T ss_pred             eeEEEEECcCCCCHHHHHHHHhcCC---CCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHH----------HHHh-
Confidence            4689999999999999999999873   2344444443321   1111  334689999996321          1111 


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcch--HHHHHHHHhh--CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCC-
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP-  241 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~--~~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-  241 (269)
                        ......+|++++|+|.........  ..++..+...  +.|+++|+||+|+..............+.....   ..+ 
T Consensus        89 --~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~  163 (194)
T 3reg_A           89 --PLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKL---GCVA  163 (194)
T ss_dssp             --GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHH---TCSC
T ss_pred             --HhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhc---CCCE
Confidence              122345999999999875322222  2344444443  689999999999975311100011111112211   344 


Q ss_pred             eEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325          242 VMMVSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       242 vi~vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      ++++||++|.|+++++++|.+.+..
T Consensus       164 ~~~~Sa~~~~gi~~l~~~l~~~i~~  188 (194)
T 3reg_A          164 YIEASSVAKIGLNEVFEKSVDCIFS  188 (194)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHHHC
T ss_pred             EEEeecCCCCCHHHHHHHHHHHHHh
Confidence            9999999999999999999887644

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.85  E-value=1.5e-20  Score=147.55  Aligned_cols=154  Identities=16%  Similarity=0.081  Sum_probs=95.8

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee--EEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~--~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      .++|+++|.+|+|||||+|+|++..  ......+.++.+..  ....   ...+.+|||||....          ..+  
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~--   71 (170)
T 1z08_A            6 SFKVVLLGEGCVGKTSLVLRYCENK--FNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERF----------HAL--   71 (170)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHCC--CCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC------------------
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCC--CCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhh----------hhh--
Confidence            4689999999999999999999873  22223333333322  2222   235889999996321          111  


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  242 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  242 (269)
                       .......+|++++|+|+........ ..++..+..   .+.|+++|+||+|+.+......  +...+....   ...++
T Consensus        72 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~~~---~~~~~  145 (170)
T 1z08_A           72 -GPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSI--QEAESYAES---VGAKH  145 (170)
T ss_dssp             --CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCH--HHHHHHHHH---TTCEE
T ss_pred             -HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCH--HHHHHHHHH---cCCeE
Confidence             1223345999999999875322111 223333332   4689999999999975322110  111122222   24689


Q ss_pred             EEeeCCCCCCHHHHHHHHHHhhh
Q 024325          243 MMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       243 i~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      +++||++|.|+++++++|.+.+.
T Consensus       146 ~~~Sa~~~~gi~~l~~~l~~~~~  168 (170)
T 1z08_A          146 YHTSAKQNKGIEELFLDLCKRMI  168 (170)
T ss_dssp             EEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             EEecCCCCCCHHHHHHHHHHHHh
Confidence            99999999999999999988764

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.85  E-value=7.4e-22  Score=176.99  Aligned_cols=158  Identities=25%  Similarity=0.271  Sum_probs=107.0

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe---CC-cEEEEcCCCCCCcchh--HHHHHHHH
Q 024325           89 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GT-KLCLVDLPGYGFAYAK--EEVKDAWE  162 (269)
Q Consensus        89 ~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~---~~-~~~lvDtpG~~~~~~~--~~~~~~~~  162 (269)
                      ....++|+++|.+|+|||||+|+|++. ....+++.+++|.+......   +. .+.+|||||+.+....  ....    
T Consensus        31 ~~~~~kI~IvG~~~vGKSTLin~L~~~-~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~----  105 (423)
T 3qq5_A           31 AGFRRYIVVAGRRNVGKSSFMNALVGQ-NVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVE----  105 (423)
T ss_dssp             -CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHH----
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHcC-CCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHH----
Confidence            345679999999999999999999998 55678889999988754332   33 7999999998653211  1111    


Q ss_pred             HHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325          163 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  242 (269)
Q Consensus       163 ~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  242 (269)
                          ........+|++++|+|+  +....+..++..+...++|+++|+||+|+...... ...+.    +  ......++
T Consensus       106 ----~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~-~~~~~----l--~~~~g~~v  172 (423)
T 3qq5_A          106 ----KARRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAE-ELKGL----Y--ESRYEAKV  172 (423)
T ss_dssp             ----HHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCT-HHHHH----S--SCCTTCCC
T ss_pred             ----HHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHH-HHHHH----H--HHHcCCCE
Confidence                111222349999999998  56677788888898889999999999999876543 11111    1  11235789


Q ss_pred             EEeeCCCCCCHHHHHHHHHHhh
Q 024325          243 MMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       243 i~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      +++||++|.|+++++++|.+.+
T Consensus       173 ~~vSAktg~gI~eL~~~L~~~l  194 (423)
T 3qq5_A          173 LLVSALQKKGFDDIGKTISEIL  194 (423)
T ss_dssp             CCCSSCCTTSTTTHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHhh
Confidence            9999999999999999999877

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.85  E-value=6e-20  Score=161.96  Aligned_cols=161  Identities=22%  Similarity=0.254  Sum_probs=111.4

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe---CCcEEEEcCCCCCCcchh--HHHHHHHHHH
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAK--EEVKDAWEEL  164 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~---~~~~~lvDtpG~~~~~~~--~~~~~~~~~~  164 (269)
                      ...++|+++|++|+|||||+|+|++..  ..+++.+++|.+......   +..+.+|||||+......  ....   .  
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~---~--  237 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAK--PEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIE---K--  237 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSC--CEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHH---H--
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC--CccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHH---H--
Confidence            456899999999999999999999983  456778888887754432   456899999998653211  1111   0  


Q ss_pred             HHHHHhcccccceEEEEEeCCCCC--Ccc-hHHHHHHHHh-h-CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCC
Q 024325          165 VKEYVSTRVSLKRVCLLIDTKWGV--KPR-DHELISLMER-S-QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLV  239 (269)
Q Consensus       165 ~~~~~~~~~~~d~vl~vid~~~~~--~~~-~~~~~~~l~~-~-~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  239 (269)
                       .........+|.+++|+|++...  ... ...++..+.. . +.|+++|+||+|+....+.......    ...   ..
T Consensus       238 -~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~----~~~---~~  309 (357)
T 2e87_A          238 -QAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKF----VKE---KG  309 (357)
T ss_dssp             -HHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHH----HHH---TT
T ss_pred             -HHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHH----HHh---cC
Confidence             11112223489999999987543  222 2344554443 2 7999999999999876554322222    211   24


Q ss_pred             CCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          240 QPVMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       240 ~~vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      .+++++||++|+|+++|+++|.+.+.
T Consensus       310 ~~~~~iSA~~g~gi~~l~~~i~~~l~  335 (357)
T 2e87_A          310 LNPIKISALKGTGIDLVKEEIIKTLR  335 (357)
T ss_dssp             CCCEECBTTTTBTHHHHHHHHHHHHH
T ss_pred             CCeEEEeCCCCcCHHHHHHHHHHHHH
Confidence            78999999999999999999988764

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.85  E-value=2.4e-20  Score=150.26  Aligned_cols=156  Identities=15%  Similarity=0.019  Sum_probs=96.3

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE--eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~--~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      ..++|+++|.+|+|||||+|+|++........+..+.+.......  ....+.+|||||....          ..+...+
T Consensus         7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~~~   76 (199)
T 2gf0_A            7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQF----------PAMQRLS   76 (199)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSC----------HHHHHHH
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHh----------HHHHHHh
Confidence            457999999999999999999998631111111111111111111  1346899999996432          1222233


Q ss_pred             HhcccccceEEEEEeCCCCCCcc-hHHHHHHHHh-----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325          169 VSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  242 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~~~~~~-~~~~~~~l~~-----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  242 (269)
                      +..   +|++++|+|.+...... ...++..+..     .+.|+++|+||+|+............+...   .   ..++
T Consensus        77 ~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---~---~~~~  147 (199)
T 2gf0_A           77 ISK---GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQE---W---KCAF  147 (199)
T ss_dssp             HHH---CSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHH---H---TCEE
T ss_pred             hcc---CCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHH---h---CCeE
Confidence            322   89999999987532211 1233333332     368999999999997632211212222211   1   3689


Q ss_pred             EEeeCCCCCCHHHHHHHHHHhhh
Q 024325          243 MMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       243 i~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      +++||++|.|+++++++|.+.+.
T Consensus       148 ~~~Sa~~~~gi~~l~~~l~~~~~  170 (199)
T 2gf0_A          148 METSAKMNYNVKELFQELLTLET  170 (199)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHCS
T ss_pred             EEEecCCCCCHHHHHHHHHHHHh
Confidence            99999999999999999988764

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.85  E-value=2e-20  Score=151.10  Aligned_cols=164  Identities=13%  Similarity=0.081  Sum_probs=100.0

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE---EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~---~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      ...++|+++|.+|+|||||+|++.+............++......   .....+.+|||||.......     .|.  ..
T Consensus        18 ~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-----~~~--~~   90 (196)
T 3llu_A           18 GSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDP-----TFD--YE   90 (196)
T ss_dssp             --CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCT-----TCC--HH
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhh-----hhh--cc
Confidence            456799999999999999999999863222111111122222221   12467999999997432110     000  02


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcchHHHHHHHHh-----hCCcEEEEEecCCCCCchHHHHHHH----HHHHHHHhcC-
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAM----QIEESLKANN-  236 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~-----~~~p~iiv~NK~Dl~~~~~~~~~~~----~~~~~~~~~~-  236 (269)
                      .|+..   +|++++|+|+..........+..++..     .+.|+++|+||+|+.+.........    ...+.+.... 
T Consensus        91 ~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~  167 (196)
T 3llu_A           91 MIFRG---TGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGL  167 (196)
T ss_dssp             HHHHT---CSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccccc---CCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhh
Confidence            23332   999999999986532333444445443     3789999999999987543221111    1122222211 


Q ss_pred             -CCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325          237 -SLVQPVMMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       237 -~~~~~vi~vSa~~g~gi~~L~~~i~~~~  264 (269)
                       ....+++++||++ .|++++++.|.+.+
T Consensus       168 ~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          168 EKLHLSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             TTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             hcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence             2356899999999 99999999998754

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.85  E-value=6.3e-21  Score=152.89  Aligned_cols=155  Identities=14%  Similarity=0.074  Sum_probs=99.8

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      .++|+++|.+|+|||||+|+|++........+..+++........   ...+.+|||||......          +.   
T Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~---   88 (189)
T 2gf9_A           22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRT----------IT---   88 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCC----------SG---
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhh----------hH---
Confidence            469999999999999999999987311122233344433332222   34689999999743211          11   


Q ss_pred             HhcccccceEEEEEeCCCCCCcch-HHHHHHHHhh---CCcEEEEEecCCCCCchHH-HHHHHHHHHHHHhcCCCCCCeE
Q 024325          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDV-ARRAMQIEESLKANNSLVQPVM  243 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~~---~~p~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~vi  243 (269)
                      ......+|++++|+|+........ ..++..+...   +.|+++|+||+|+...... ......+.+.   .   ..+++
T Consensus        89 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~---~---~~~~~  162 (189)
T 2gf9_A           89 TAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADD---L---GFEFF  162 (189)
T ss_dssp             GGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH---H---TCEEE
T ss_pred             HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHH---c---CCeEE
Confidence            122334999999999875322111 2344555443   6899999999999753221 1111222221   1   36899


Q ss_pred             EeeCCCCCCHHHHHHHHHHhhh
Q 024325          244 MVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       244 ~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      ++||++|.|+++++++|.+.+.
T Consensus       163 ~~Sa~~g~gi~~l~~~l~~~i~  184 (189)
T 2gf9_A          163 EASAKENINVKQVFERLVDVIC  184 (189)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999988764

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.85  E-value=1.8e-20  Score=149.17  Aligned_cols=155  Identities=14%  Similarity=0.082  Sum_probs=99.8

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEEeC--CcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      .++|+++|.+|+|||||+|+|++..   ....+++++.+..   +...+  ..+.+|||||....          ..+..
T Consensus        18 ~~ki~v~G~~~~GKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~   84 (187)
T 2a9k_A           18 LHKVIMVGSGGVGKSALTLQFMYDE---FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY----------AAIRD   84 (187)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC---CCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC----------HHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCC---CCCcCCCccceEEEEEEEECCEEEEEEEEECCCCccc----------HHHHH
Confidence            4689999999999999999999873   3344444444332   11122  36899999997542          12222


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCC
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP  241 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (269)
                      .++..   +|++++|+|......... ..++..+..    .++|+++|+||+|+.+.....  ...+.+....   ...+
T Consensus        85 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~---~~~~  156 (187)
T 2a9k_A           85 NYFRS---GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS--VEEAKNRAEQ---WNVN  156 (187)
T ss_dssp             HHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSC--HHHHHHHHHH---TTCE
T ss_pred             HHhcc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccC--HHHHHHHHHH---cCCe
Confidence            33332   899999999874321111 122233322    368999999999997532211  1112222222   2468


Q ss_pred             eEEeeCCCCCCHHHHHHHHHHhhhhh
Q 024325          242 VMMVSSKSGAGIRSLRTVLSKIARFA  267 (269)
Q Consensus       242 vi~vSa~~g~gi~~L~~~i~~~~~~~  267 (269)
                      ++++||++|.|+++++++|.+.+...
T Consensus       157 ~~~~Sa~~~~gi~~l~~~l~~~i~~~  182 (187)
T 2a9k_A          157 YVETSAKTRANVDKVFFDLMREIRAR  182 (187)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999999998877543

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.85  E-value=1.9e-20  Score=150.49  Aligned_cols=153  Identities=14%  Similarity=0.168  Sum_probs=98.0

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCC-------CCCceeEeeEEE--------eCCcEEEEcCCCCCCcchhHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-------KPGLTQTINFFK--------LGTKLCLVDLPGYGFAYAKEE  156 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~-------~~gtt~~~~~~~--------~~~~~~lvDtpG~~~~~~~~~  156 (269)
                      .++|+++|.+|+|||||+|.+.+... ....+       ....|....+..        ....+.+|||||....     
T Consensus        14 ~~ki~vvG~~~~GKssL~~~l~~~~~-~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----   87 (198)
T 3t1o_A           14 NFKIVYYGPGLSGKTTNLKWIYSKVP-EGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFY-----   87 (198)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHTSC-GGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSC-----
T ss_pred             ccEEEEECCCCCCHHHHHHHHHhhcc-ccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHH-----
Confidence            46899999999999999998887632 21111       011232222221        1235899999997432     


Q ss_pred             HHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchH----HHHHHHHh-----hCCcEEEEEecCCCCCchHHHHHHHH
Q 024325          157 VKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH----ELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQ  227 (269)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~----~~~~~l~~-----~~~p~iiv~NK~Dl~~~~~~~~~~~~  227 (269)
                           ..+...++   ..+|++++|+|+..+....+.    .+..++..     .+.|+++|+||+|+.......+.   
T Consensus        88 -----~~~~~~~~---~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~---  156 (198)
T 3t1o_A           88 -----NASRKLIL---RGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMV---  156 (198)
T ss_dssp             -----SHHHHHHT---TTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHH---
T ss_pred             -----HHHHHHHH---hcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHH---
Confidence                 12222333   349999999999743222222    23334433     46899999999999765333222   


Q ss_pred             HHHHHHhcCCCCC-CeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          228 IEESLKANNSLVQ-PVMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       228 ~~~~~~~~~~~~~-~vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                       .+...   .... +++++||++|.|+++++++|.+.+.
T Consensus       157 -~~~~~---~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~  191 (198)
T 3t1o_A          157 -RAVVD---PEGKFPVLEAVATEGKGVFETLKEVSRLVL  191 (198)
T ss_dssp             -HHHHC---TTCCSCEEECBGGGTBTHHHHHHHHHHHHH
T ss_pred             -HHHHH---hcCCceEEEEecCCCcCHHHHHHHHHHHHH
Confidence             22222   2245 8999999999999999999988764

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.85  E-value=1.9e-21  Score=170.00  Aligned_cols=160  Identities=19%  Similarity=0.193  Sum_probs=110.0

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE--e--CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--L--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~--~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      .+.|+++|.+|||||||+|+|++..  ..+++++++|.+.....  .  +..+.+|||||+.+...      .+..+...
T Consensus       158 la~V~lvG~~nvGKSTLln~L~~~~--~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~------~~~~l~~~  229 (342)
T 1lnz_A          158 LADVGLVGFPSVGKSTLLSVVSSAK--PKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAH------QGVGLGHQ  229 (342)
T ss_dssp             CCCEEEESSTTSSHHHHHHHSEEEC--CEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTT------CTTTTHHH
T ss_pred             cCeeeeeCCCCCCHHHHHHHHHcCC--CccccCCccccCceEEEEEeCCCceEEEecCCCCccccc------ccchhHHH
Confidence            4689999999999999999999873  45688898888765332  2  26799999999743111      01122334


Q ss_pred             HHhcccccceEEEEEeCCCC--CCc-ch-HHHHHHHHh-----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCC
Q 024325          168 YVSTRVSLKRVCLLIDTKWG--VKP-RD-HELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSL  238 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~--~~~-~~-~~~~~~l~~-----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  238 (269)
                      |++....++++++|+|++..  ..+ .+ ..++..+..     ..+|+++|+||+|+....+   ..+.+.+.   +. .
T Consensus       230 fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e---~~~~l~~~---l~-~  302 (342)
T 1lnz_A          230 FLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAE---NLEAFKEK---LT-D  302 (342)
T ss_dssp             HHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHH---HHHHHHHH---CC-S
T ss_pred             HHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHH---HHHHHHHH---hh-c
Confidence            44445559999999999752  111 11 234455554     3689999999999986432   12222222   11 1


Q ss_pred             CCCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325          239 VQPVMMVSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       239 ~~~vi~vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      ..+++++||++++|+++|+++|.+.+..
T Consensus       303 ~~~v~~iSA~tg~gi~eL~~~l~~~l~~  330 (342)
T 1lnz_A          303 DYPVFPISAVTREGLRELLFEVANQLEN  330 (342)
T ss_dssp             CCCBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCcCHHHHHHHHHHHHhh
Confidence            2679999999999999999999988754

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.85  E-value=1.9e-20  Score=148.98  Aligned_cols=153  Identities=14%  Similarity=0.146  Sum_probs=96.8

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee--EEEe-C--CcEEEEcCCCCCCcchhHHHHHHHHHHH
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~--~~~~-~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~  165 (269)
                      ..++|+++|.+|+|||||+|+|++..   ....+.+++.+..  .... +  ..+.+|||||.....          .+.
T Consensus        17 ~~~ki~v~G~~~~GKSsl~~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------~~~   83 (183)
T 3kkq_A           17 PTYKLVVVGDGGVGKSALTIQFFQKI---FVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFS----------AMR   83 (183)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSC---CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGC----------SSH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCC---CCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhH----------HHH
Confidence            45789999999999999999999862   3333333433321  1122 2  336679999964321          111


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcch-HHHHHHH----HhhCCcEEEEEecCCCCCchHHH-HHHHHHHHHHHhcCCCC
Q 024325          166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLM----ERSQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLV  239 (269)
Q Consensus       166 ~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l----~~~~~p~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~  239 (269)
                      ..++..   +|++++|+|......... ..++..+    ...+.|+++|+||+|+....... .....+.+   ..   .
T Consensus        84 ~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~---~~---~  154 (183)
T 3kkq_A           84 EQYMRT---GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMAT---KY---N  154 (183)
T ss_dssp             HHHHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHH---HH---T
T ss_pred             HHHHhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHH---Hh---C
Confidence            222222   899999999875321111 2233333    22468999999999997532211 11122222   11   3


Q ss_pred             CCeEEeeCC-CCCCHHHHHHHHHHhhh
Q 024325          240 QPVMMVSSK-SGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       240 ~~vi~vSa~-~g~gi~~L~~~i~~~~~  265 (269)
                      .+++++||+ +|.|+++++++|.+.+.
T Consensus       155 ~~~~~~Sa~~~~~~v~~l~~~l~~~i~  181 (183)
T 3kkq_A          155 IPYIETSAKDPPLNVDKTFHDLVRVIR  181 (183)
T ss_dssp             CCEEEEBCSSSCBSHHHHHHHHHHHHH
T ss_pred             CeEEEeccCCCCCCHHHHHHHHHHHHh
Confidence            789999999 99999999999998765

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.85  E-value=6e-21  Score=155.21  Aligned_cols=156  Identities=14%  Similarity=0.009  Sum_probs=100.6

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE---EeC--CcEEEEcCCCCCCcchhHHHHHHHHHHH
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLG--TKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~---~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~  165 (269)
                      ..++|+++|.+|+|||||++++++.   .....+.+++.+....   ..+  ..+.+|||||....          ..+ 
T Consensus        29 ~~~ki~vvG~~~~GKSsLi~~l~~~---~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~-   94 (204)
T 4gzl_A           29 QAIKCVVVGDGAVGKTCLLISYTTN---AFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDY----------DRL-   94 (204)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHHS---CCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGG----------TTT-
T ss_pred             CeEEEEEECcCCCCHHHHHHHHHhC---CCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhh----------HHH-
Confidence            3579999999999999999999976   2345555565554321   123  34569999997321          111 


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcchH--HHHHHHHhh--CCcEEEEEecCCCCCchHHHHHHH----------HHHHH
Q 024325          166 KEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTDTVFPIDVARRAM----------QIEES  231 (269)
Q Consensus       166 ~~~~~~~~~~d~vl~vid~~~~~~~~~~--~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~~~~----------~~~~~  231 (269)
                        .......+|++++|+|+.........  .++..+...  +.|+++|+||+|+...........          .....
T Consensus        95 --~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~  172 (204)
T 4gzl_A           95 --RPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM  172 (204)
T ss_dssp             --GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred             --HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHH
Confidence              11233459999999998753322222  355555554  789999999999987644222111          11111


Q ss_pred             HHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325          232 LKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       232 ~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      ....  ...+++++||++|+|+++++++|.+.+
T Consensus       173 ~~~~--~~~~~~~~SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          173 AKEI--GAVKYLECSALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             HHHT--TCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred             HHhc--CCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence            1111  134699999999999999999998754

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.84  E-value=1.5e-21  Score=155.22  Aligned_cols=155  Identities=14%  Similarity=0.021  Sum_probs=96.6

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEEeC--CcEEEEcCCCCCCcchhHHHHHHHHHHH
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~  165 (269)
                      ..++|+++|.+|+|||||+|+|++..   ....+++|+.+..   ....+  ..+.+|||||.....          .+.
T Consensus         5 ~~~ki~~~G~~~~GKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~   71 (181)
T 3t5g_A            5 KSRKIAILGYRSVGKSSLTIQFVEGQ---FVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYS----------IFP   71 (181)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSS---CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTC----------CCC
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCC---CCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhh----------HHH
Confidence            35789999999999999999999762   3444444443322   22222  457899999975421          011


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcch-HHHHHHH----HhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCC
Q 024325          166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLM----ERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ  240 (269)
Q Consensus       166 ~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l----~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  240 (269)
                      ..   ....+|++++|+|......... ..++..+    ...++|+++|+||+|+........  .........   ...
T Consensus        72 ~~---~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~--~~~~~~~~~---~~~  143 (181)
T 3t5g_A           72 QT---YSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISY--EEGKALAES---WNA  143 (181)
T ss_dssp             GG---GTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCH--HHHHHHHHH---TTC
T ss_pred             HH---HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecH--HHHHHHHHH---hCC
Confidence            11   2234899999999874211111 1222222    223689999999999965432211  111112222   246


Q ss_pred             CeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325          241 PVMMVSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       241 ~vi~vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      +++++||++|.|+++++++|.+.+..
T Consensus       144 ~~~~~Sa~~~~~v~~l~~~l~~~~~~  169 (181)
T 3t5g_A          144 AFLESSAKENQTAVDVFRRIILEAEK  169 (181)
T ss_dssp             EEEECCTTSHHHHHHHHHHHHHHHHT
T ss_pred             cEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            89999999999999999999887653

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.84  E-value=8.5e-21  Score=148.51  Aligned_cols=153  Identities=15%  Similarity=0.118  Sum_probs=96.1

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe--eEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~--~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      .++|+++|.+|+|||||+|+|++.. . .....+.++.+.  .....   ...+.+|||||....          ..+..
T Consensus         5 ~~~i~v~G~~~~GKssl~~~l~~~~-~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~   72 (168)
T 1z2a_A            5 AIKMVVVGNGAVGKSSMIQRYCKGI-F-TKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEF----------DAITK   72 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCC-C-CCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGT----------TCCCH
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcCC-C-CCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhH----------HHHHH
Confidence            4689999999999999999999873 2 112222222222  11221   346899999996321          11122


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh--hCCcEEEEEecCCCCCchHH-HHHHHHHHHHHHhcCCCCCCe
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDTVFPIDV-ARRAMQIEESLKANNSLVQPV  242 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~--~~~p~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~v  242 (269)
                      .++.   .+|++++|+|++....... ..++..+..  .+.|+++|+||+|+...... ......+.+   ..   ..++
T Consensus        73 ~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---~~---~~~~  143 (168)
T 1z2a_A           73 AYYR---GAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAK---RL---KLRF  143 (168)
T ss_dssp             HHHT---TCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHH---HH---TCEE
T ss_pred             HHhc---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHH---Hc---CCeE
Confidence            2332   3899999999875321111 233333332  37899999999999753221 111122221   11   4689


Q ss_pred             EEeeCCCCCCHHHHHHHHHHhhh
Q 024325          243 MMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       243 i~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      +++||++|.|+++++++|.+.+.
T Consensus       144 ~~~Sa~~~~~i~~l~~~l~~~~~  166 (168)
T 1z2a_A          144 YRTSVKEDLNVSEVFKYLAEKHL  166 (168)
T ss_dssp             EECBTTTTBSSHHHHHHHHHHHH
T ss_pred             EEEecCCCCCHHHHHHHHHHHHh
Confidence            99999999999999999987653

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.84  E-value=7e-21  Score=153.12  Aligned_cols=153  Identities=18%  Similarity=0.133  Sum_probs=98.4

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhc
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST  171 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~  171 (269)
                      ..+|+++|.+|+|||||+|+|++. ......+..+.+.. .+...+..+.+|||||.....          .+..   ..
T Consensus        23 ~~ki~~vG~~~vGKSsli~~l~~~-~~~~~~~t~~~~~~-~~~~~~~~~~i~Dt~G~~~~~----------~~~~---~~   87 (190)
T 1m2o_B           23 HGKLLFLGLDNAGKTTLLHMLKND-RLATLQPTWHPTSE-ELAIGNIKFTTFDLGGHIQAR----------RLWK---DY   87 (190)
T ss_dssp             -CEEEEEESTTSSHHHHHHHHHHS-CCCCCCCCCSCEEE-EEEETTEEEEEEECCCSGGGT----------TSGG---GG
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcC-CCCccccCCCCCeE-EEEECCEEEEEEECCCCHHHH----------HHHH---HH
Confidence            358999999999999999999987 33434444444322 222336789999999974321          1111   22


Q ss_pred             ccccceEEEEEeCCCCCCcch-HHHHHHHH----hhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhc---------CC
Q 024325          172 RVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN---------NS  237 (269)
Q Consensus       172 ~~~~d~vl~vid~~~~~~~~~-~~~~~~l~----~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~---------~~  237 (269)
                      ...+|++++|+|+........ ..++..+.    ..+.|+++|+||+|+.......+    +.+.+...         ..
T Consensus        88 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~~~  163 (190)
T 1m2o_B           88 FPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAE----LRSALGLLNTTGSQRIEGQ  163 (190)
T ss_dssp             CTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHH----HHHHTTCSSCCC---CCSS
T ss_pred             HhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHH----HHHHhCCcccccccccccc
Confidence            345899999999985422221 22233332    24689999999999976332222    22222111         11


Q ss_pred             CCCCeEEeeCCCCCCHHHHHHHHHHh
Q 024325          238 LVQPVMMVSSKSGAGIRSLRTVLSKI  263 (269)
Q Consensus       238 ~~~~vi~vSa~~g~gi~~L~~~i~~~  263 (269)
                      ...+++++||++|.|+++++++|.+.
T Consensus       164 ~~~~~~~~Sa~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          164 RPVEVFMCSVVMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             CCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             ceEEEEEeECCcCCCHHHHHHHHHhh
Confidence            24579999999999999999999764

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.84  E-value=1.1e-20  Score=151.60  Aligned_cols=155  Identities=18%  Similarity=0.104  Sum_probs=98.6

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      .++|+++|.+|+|||||+|+|++........+..+++........   +..+.+|||||....          ..+...+
T Consensus        15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~   84 (195)
T 1x3s_A           15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERF----------RTLTPSY   84 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGG----------CCSHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhh----------hhhhHHH
Confidence            368999999999999999999987311122233333333333222   356899999997432          1112233


Q ss_pred             HhcccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeE
Q 024325          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM  243 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi  243 (269)
                      +.   .+|++++|+|+........ ..++..+..    .++|+++|+||+|+.........   ..+....   ...+++
T Consensus        85 ~~---~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~---~~~~~~~---~~~~~~  155 (195)
T 1x3s_A           85 YR---GAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNE---GLKFARK---HSMLFI  155 (195)
T ss_dssp             HT---TCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHH---HHHHHHH---TTCEEE
T ss_pred             hc---cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHH---HHHHHHH---cCCEEE
Confidence            32   3899999999875322211 233444433    35899999999999643211111   1111221   246899


Q ss_pred             EeeCCCCCCHHHHHHHHHHhhh
Q 024325          244 MVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       244 ~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      ++||++|.|+++++++|.+.+.
T Consensus       156 ~~Sa~~~~gi~~l~~~l~~~~~  177 (195)
T 1x3s_A          156 EASAKTCDGVQCAFEELVEKII  177 (195)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EecCCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999988764

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.84  E-value=1.6e-20  Score=148.48  Aligned_cols=153  Identities=18%  Similarity=0.152  Sum_probs=97.5

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE--EEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~--~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      ++|+++|.+|+|||||+|+|++..  ......+.++.+...  ...   ...+.+|||||....          ..+...
T Consensus        15 ~~i~v~G~~~~GKssli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~----------~~~~~~   82 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFMYDS--FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF----------RSLIPS   82 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSC--CCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG----------GGGSHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC--CCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHH----------HHHHHH
Confidence            689999999999999999999763  223334444444322  222   246899999996432          111222


Q ss_pred             HHhcccccceEEEEEeCCCCCCcc-hHHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeE
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM  243 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~-~~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi  243 (269)
                      ++.   .+|++++|+|+....... ...++..+..   .+.|+++|+||+|+.+......  ..........   ..+++
T Consensus        83 ~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~~~~---~~~~~  154 (179)
T 2y8e_A           83 YIR---DSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVST--EEGERKAKEL---NVMFI  154 (179)
T ss_dssp             HHH---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCH--HHHHHHHHHH---TCEEE
T ss_pred             Hhc---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCH--HHHHHHHHHc---CCeEE
Confidence            222   389999999987532111 1233333332   3689999999999975432211  0111111111   46899


Q ss_pred             EeeCCCCCCHHHHHHHHHHhhh
Q 024325          244 MVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       244 ~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      ++||++|.|+++++++|.+.+.
T Consensus       155 ~~Sa~~~~~i~~l~~~l~~~~~  176 (179)
T 2y8e_A          155 ETSAKAGYNVKQLFRRVAAALP  176 (179)
T ss_dssp             EEBTTTTBSHHHHHHHHHHTCC
T ss_pred             EEeCCCCCCHHHHHHHHHHHHh
Confidence            9999999999999999988764

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.84  E-value=3.3e-20  Score=150.71  Aligned_cols=153  Identities=20%  Similarity=0.167  Sum_probs=97.8

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee--EEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~--~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      .++|+++|.+|+|||||+|+|++..  ......+.++.+..  ....   ...+.+|||||...          +..+. 
T Consensus        26 ~~ki~lvG~~~vGKSsLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~----------~~~~~-   92 (201)
T 2ew1_A           26 LFKIVLIGNAGVGKTCLVRRFTQGL--FPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER----------FRSIT-   92 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSS--CCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG----------GHHHH-
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCC--CCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHH----------HHHHH-
Confidence            4689999999999999999999873  22233333333432  2222   23689999999632          12222 


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHH-HHHHHHHHHHHHhcCCCCCC
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDV-ARRAMQIEESLKANNSLVQP  241 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~  241 (269)
                        ......+|++++|+|++....... ..++..+..   .+.|+++|+||+|+...... ......+..   ..   ..+
T Consensus        93 --~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~---~~---~~~  164 (201)
T 2ew1_A           93 --QSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSE---AQ---DMY  164 (201)
T ss_dssp             --GGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHH---HH---TCC
T ss_pred             --HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHH---Hc---CCE
Confidence              233445999999999875322111 234444433   36899999999999743221 111111111   11   468


Q ss_pred             eEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          242 VMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       242 vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      ++++||++|.|+++++++|.+.+.
T Consensus       165 ~~~~Sa~~g~gv~~l~~~l~~~i~  188 (201)
T 2ew1_A          165 YLETSAKESDNVEKLFLDLACRLI  188 (201)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999987653

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.84  E-value=4.7e-21  Score=153.98  Aligned_cols=156  Identities=16%  Similarity=0.122  Sum_probs=100.3

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      ..++|+++|.+|+|||||+|+|++........+..+++.......   .+..+.+|||||..          .+..+...
T Consensus        22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~   91 (191)
T 3dz8_A           22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE----------RYRTITTA   91 (191)
T ss_dssp             ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHH----------HCHHHHHH
T ss_pred             eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChH----------HHHHHHHH
Confidence            357999999999999999999998631111122223333333332   24468999999941          22333344


Q ss_pred             HHhcccccceEEEEEeCCCCCCcc-hHHHHHHHHh---hCCcEEEEEecCCCCCchHH-HHHHHHHHHHHHhcCCCCCCe
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER---SQTKYQVVLTKTDTVFPIDV-ARRAMQIEESLKANNSLVQPV  242 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~-~~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~v  242 (269)
                      ++.   .+|++++|+|........ ...++..+..   .+.|+++|+||+|+...... ......+....      ..++
T Consensus        92 ~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~------~~~~  162 (191)
T 3dz8_A           92 YYR---GAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQL------GFDF  162 (191)
T ss_dssp             HHT---TCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHH------TCEE
T ss_pred             HHc---cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHc------CCeE
Confidence            443   399999999987532111 1344455544   46899999999998643221 11112222211      4689


Q ss_pred             EEeeCCCCCCHHHHHHHHHHhhh
Q 024325          243 MMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       243 i~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      +++||++|.|+++++++|.+.+.
T Consensus       163 ~~~Sa~~~~gi~~l~~~l~~~i~  185 (191)
T 3dz8_A          163 FEASAKENISVRQAFERLVDAIC  185 (191)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999988764

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.84  E-value=3.4e-20  Score=145.42  Aligned_cols=157  Identities=14%  Similarity=0.025  Sum_probs=92.1

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE--E-E--eCCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--F-K--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~--~-~--~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      .++|+++|.+|+|||||+|+|++.. ...... +.++.+...  . .  ....+.+|||||.....         ..+..
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~   70 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQ-GDHAHE-MENSEDTYERRIMVDKEEVTLIVYDIWEQGDAG---------GWLQD   70 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC--------------CEEEEEEEETTEEEEEEEECCCCC-----------------C
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhcc-Cccccc-CCCcCCeeeEEEEECCeEEEEEEEECCCccccc---------hhhhh
Confidence            3689999999999999999998762 222222 222222211  1 1  13468899999974321         01112


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCC
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP  241 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (269)
                      .++..   +|++++|+|.+....... ..++..+..    .++|+++|+||+|+.+......  .........   ...+
T Consensus        71 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~--~~~~~~~~~---~~~~  142 (169)
T 3q85_A           71 HCLQT---GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSL--EEGRHLAGT---LSCK  142 (169)
T ss_dssp             HHHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCH--HHHHHHHHH---TTCE
T ss_pred             hhhcc---CCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCH--HHHHHHHHH---cCCc
Confidence            22222   899999999875321111 233333333    2689999999999974322111  111111121   2468


Q ss_pred             eEEeeCCCCCCHHHHHHHHHHhhhhh
Q 024325          242 VMMVSSKSGAGIRSLRTVLSKIARFA  267 (269)
Q Consensus       242 vi~vSa~~g~gi~~L~~~i~~~~~~~  267 (269)
                      ++++||++|.|+++++++|.+.+...
T Consensus       143 ~~~~Sa~~~~~v~~l~~~l~~~i~~~  168 (169)
T 3q85_A          143 HIETSAALHHNTRELFEGAVRQIRLR  168 (169)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             EEEecCccCCCHHHHHHHHHHHHHhc
Confidence            99999999999999999999887653

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.84  E-value=7.8e-21  Score=154.24  Aligned_cols=155  Identities=15%  Similarity=0.069  Sum_probs=97.9

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee--EEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHH
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~--~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~  165 (269)
                      ..++|+++|.+|+|||||+|+|++.. . .....+.++.+..  ....   ...+.+|||||....          ..+.
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~-~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~   74 (207)
T 1vg8_A            7 VLLKVIILGDSGVGKTSLMNQYVNKK-F-SNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERF----------QSLG   74 (207)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSC-C-CSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGG----------SCSC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCC-C-CCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHH----------HHhH
Confidence            34789999999999999999999873 2 2222333333432  2222   246899999996321          0111


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh-------hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCC
Q 024325          166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNS  237 (269)
Q Consensus       166 ~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~-------~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~  237 (269)
                      .   .....+|++++|+|+..+..... ..++..+..       .+.|+++|+||+|+............+   ...  .
T Consensus        75 ~---~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~---~~~--~  146 (207)
T 1vg8_A           75 V---AFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAW---CYS--K  146 (207)
T ss_dssp             C---GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHH---HHH--T
T ss_pred             H---HHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHH---HHh--c
Confidence            1   12234899999999875322111 223333322       368999999999998432222212211   111  2


Q ss_pred             CCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          238 LVQPVMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       238 ~~~~vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      ...+++++||++|.|+++++++|.+.+.
T Consensus       147 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~~  174 (207)
T 1vg8_A          147 NNIPYFETSAKEAINVEQAFQTIARNAL  174 (207)
T ss_dssp             TSCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             CCceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            2578999999999999999999988764

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.84  E-value=3.1e-21  Score=158.14  Aligned_cols=158  Identities=15%  Similarity=0.080  Sum_probs=99.9

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe-C---CcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL-G---TKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~-~---~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      ..++|+++|.+|+|||||+|+|++...........+++........ +   ..+.+|||||.....          .+..
T Consensus        10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~~   79 (218)
T 4djt_A           10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKA----------VLKD   79 (218)
T ss_dssp             CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTS----------CCCH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhc----------hHHH
Confidence            3468999999999999999999976322223344444433333322 2   458999999964321          1112


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  242 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  242 (269)
                      .++.   .+|++++|+|+..+....+ ..++..+..   .+.|+++|+||+|+........  .....   .......++
T Consensus        80 ~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~---~~~~~~~~~  151 (218)
T 4djt_A           80 VYYI---GASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISK--KLVME---VLKGKNYEY  151 (218)
T ss_dssp             HHHT---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCH--HHHHH---HTTTCCCEE
T ss_pred             HHhh---cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCH--HHHHH---HHHHcCCcE
Confidence            2222   3999999999985433222 233333333   3689999999999976422211  11111   112335789


Q ss_pred             EEeeCCCCCCHHHHHHHHHHhhhh
Q 024325          243 MMVSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       243 i~vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      +++||++|.|+++++++|.+.+..
T Consensus       152 ~~~Sa~~g~gv~~l~~~l~~~~~~  175 (218)
T 4djt_A          152 FEISAKTAHNFGLPFLHLARIFTG  175 (218)
T ss_dssp             EEEBTTTTBTTTHHHHHHHHHHHC
T ss_pred             EEEecCCCCCHHHHHHHHHHHHhc
Confidence            999999999999999999987653

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.84  E-value=4.4e-21  Score=152.39  Aligned_cols=156  Identities=17%  Similarity=0.029  Sum_probs=92.0

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee-----EEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHH
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-----FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~-----~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~  165 (269)
                      ..++|+++|.+|+|||||+|++++..   ....+.+|+.+..     .......+.+|||||.....          .+.
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~   73 (182)
T 3bwd_D            7 RFIKCVTVGDGAVGKTCLLISYTSNT---FPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYN----------RLR   73 (182)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSC---CC----------CBCCCC-------CEEECCCC-CTTT----------TTG
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCC---CCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhh----------hhH
Confidence            35799999999999999999999872   2344444443321     11123456799999974321          111


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcchH--HHHHHHHhh--CCcEEEEEecCCCCCchHHHH--------HHHHHHHHHH
Q 024325          166 KEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTDTVFPIDVAR--------RAMQIEESLK  233 (269)
Q Consensus       166 ~~~~~~~~~~d~vl~vid~~~~~~~~~~--~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~--------~~~~~~~~~~  233 (269)
                      .   .....+|++++|+|+.........  .++..+...  +.|+++|+||+|+........        ......+...
T Consensus        74 ~---~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~  150 (182)
T 3bwd_D           74 P---LSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKK  150 (182)
T ss_dssp             G---GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHH
T ss_pred             H---hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHH
Confidence            1   223348999999998753222221  344555543  789999999999976543200        0111111111


Q ss_pred             hcCCCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325          234 ANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       234 ~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      ...  ..+++++||++|.|+++++++|.+.+
T Consensus       151 ~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~i  179 (182)
T 3bwd_D          151 LIG--APAYIECSSKSQENVKGVFDAAIRVV  179 (182)
T ss_dssp             HHT--CSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HcC--CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            111  24899999999999999999998765

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.84  E-value=1.3e-20  Score=149.96  Aligned_cols=156  Identities=13%  Similarity=-0.015  Sum_probs=99.2

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEEe--CCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      .++|+++|.+|+|||||+|+|++..   ....+.+|+.+..   ....  ...+.+|||||....          ..+..
T Consensus         5 ~~~i~~~G~~~~GKssl~~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~   71 (186)
T 1mh1_A            5 AIKCVVVGDGAVGKTCLLISYTTNA---FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY----------DRLRP   71 (186)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSS---CCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGG----------TTTGG
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCC---CCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhH----------HHHHH
Confidence            3689999999999999999999762   2333333443321   1111  345779999997321          11111


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcchH--HHHHHHHhh--CCcEEEEEecCCCCCchHHHHHH----------HHHHHHH
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTDTVFPIDVARRA----------MQIEESL  232 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~~--~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~~~----------~~~~~~~  232 (269)
                         .....+|++++|+|++.+......  .++..+...  +.|+++|+||+|+.+........          .......
T Consensus        72 ---~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~  148 (186)
T 1mh1_A           72 ---LSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA  148 (186)
T ss_dssp             ---GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred             ---HhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHH
Confidence               223459999999998753222222  345555544  78999999999997653322111          1111111


Q ss_pred             HhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          233 KANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       233 ~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      ...  ...+++++||++|.|+++++++|.+.+.
T Consensus       149 ~~~--~~~~~~~~Sa~~g~gi~~l~~~l~~~~~  179 (186)
T 1mh1_A          149 KEI--GAVKYLECSALTQRGLKTVFDEAIRAVL  179 (186)
T ss_dssp             HHT--TCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred             Hhc--CCcEEEEecCCCccCHHHHHHHHHHHHh
Confidence            111  1248999999999999999999988764

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.84  E-value=2.5e-20  Score=147.40  Aligned_cols=156  Identities=15%  Similarity=0.145  Sum_probs=96.3

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE-eC---CcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-LG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~-~~---~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      .++|+++|.+|+|||||+|+|++........+..+......... .+   ..+.+|||||.....          .+...
T Consensus         6 ~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~----------~~~~~   75 (178)
T 2hxs_A            6 QLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGG----------KMLDK   75 (178)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTC----------TTHHH
T ss_pred             eEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCcccc----------chhhH
Confidence            46899999999999999999998731111111111111111122 12   579999999975321          11223


Q ss_pred             HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh-----hCCc-EEEEEecCCCCCchHH-HHHHHHHHHHHHhcCCCC
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-----SQTK-YQVVLTKTDTVFPIDV-ARRAMQIEESLKANNSLV  239 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~-----~~~p-~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~  239 (269)
                      ++.   .+|++++|+|++....... ..++..+..     ...| +++|+||+|+.+.... ......+.+   ..   .
T Consensus        76 ~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~---~~---~  146 (178)
T 2hxs_A           76 YIY---GAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQ---EN---G  146 (178)
T ss_dssp             HHT---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHH---HH---T
T ss_pred             HHh---hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHH---Hc---C
Confidence            333   3999999999875322211 234444433     1556 7999999999753211 111112211   11   4


Q ss_pred             CCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325          240 QPVMMVSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       240 ~~vi~vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      .+++++||++|.|+++++++|.+.+..
T Consensus       147 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~  173 (178)
T 2hxs_A          147 FSSHFVSAKTGDSVFLCFQKVAAEILG  173 (178)
T ss_dssp             CEEEEECTTTCTTHHHHHHHHHHHHTT
T ss_pred             CcEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            689999999999999999999887654

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.84  E-value=2.5e-20  Score=148.56  Aligned_cols=154  Identities=12%  Similarity=0.078  Sum_probs=98.9

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee--EEEeC---CcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~--~~~~~---~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      .++|+++|.+|+|||||+|+|++..  ......+.++.+..  ....+   ..+.+|||||....          ..+  
T Consensus        10 ~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~--   75 (186)
T 2bme_A           10 LFKFLVIGNAGTGKSCLLHQFIEKK--FKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF----------RSV--   75 (186)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSS--CCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGG----------HHH--
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCC--CCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHH----------HHH--
Confidence            4789999999999999999999873  22233344443432  22222   47899999996321          122  


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  242 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  242 (269)
                       .......+|++++|+|++....... ..++..+..   .+.|+++|+||+|+........  .........   ...++
T Consensus        76 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~~~---~~~~~  149 (186)
T 2bme_A           76 -TRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTF--LEASRFAQE---NELMF  149 (186)
T ss_dssp             -HHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCH--HHHHHHHHH---TTCEE
T ss_pred             -HHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCH--HHHHHHHHH---cCCEE
Confidence             2233445999999999875322211 233333332   4689999999999964322111  111111221   24789


Q ss_pred             EEeeCCCCCCHHHHHHHHHHhhh
Q 024325          243 MMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       243 i~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      +++||++|.|+++++++|.+.+.
T Consensus       150 ~~~Sa~~~~gi~~l~~~l~~~~~  172 (186)
T 2bme_A          150 LETSALTGENVEEAFVQCARKIL  172 (186)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEecCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999987654

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.84  E-value=1.7e-20  Score=150.70  Aligned_cols=154  Identities=16%  Similarity=0.132  Sum_probs=96.1

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCcccc-CCCCCceeEeeEEEeC---CcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRT-SDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~-s~~~gtt~~~~~~~~~---~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      ..+|+++|.+|+|||||+|+|++.. .... .+..+++........+   ..+.+|||||....          ..+...
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~   89 (191)
T 2a5j_A           21 LFKYIIIGDTGVGKSCLLLQFTDKR-FQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESF----------RSITRS   89 (191)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSC-CCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGT----------SCCCHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCC-CCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhh----------hhhHHH
Confidence            4689999999999999999999873 2211 1122222222222222   47899999996321          111122


Q ss_pred             HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHH-HHHHHHHHHHHHhcCCCCCCe
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDV-ARRAMQIEESLKANNSLVQPV  242 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~v  242 (269)
                      ++.   .+|++++|+|+........ ..++..+..   .+.|+++|+||+|+...... ......+.   ...   ..++
T Consensus        90 ~~~---~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~---~~~---~~~~  160 (191)
T 2a5j_A           90 YYR---GAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFA---REH---GLIF  160 (191)
T ss_dssp             HHT---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHH---HHH---TCEE
T ss_pred             Hhc---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHH---HHc---CCEE
Confidence            332   3999999999875322221 234444443   26899999999999653221 11111111   111   4689


Q ss_pred             EEeeCCCCCCHHHHHHHHHHhhh
Q 024325          243 MMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       243 i~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      +++||++|.|+++++++|.+.+.
T Consensus       161 ~~~Sa~~~~gi~~l~~~l~~~i~  183 (191)
T 2a5j_A          161 METSAKTACNVEEAFINTAKEIY  183 (191)
T ss_dssp             EEECTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999987653

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.84  E-value=3e-21  Score=183.41  Aligned_cols=164  Identities=18%  Similarity=0.231  Sum_probs=110.6

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCc--------------eeEee------EE----------------
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL--------------TQTIN------FF----------------  134 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gt--------------t~~~~------~~----------------  134 (269)
                      ..++|+++|.+|+|||||+|+|+|. ....++..|+|              |.+..      ..                
T Consensus        68 ~~~~V~VvG~~naGKSSLlNaLlg~-~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~  146 (695)
T 2j69_A           68 GVFRLLVLGDMKRGKSTFLNALIGE-NLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA  146 (695)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHTS-SCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC-CCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence            3578999999999999999999998 66778888877              33210      00                


Q ss_pred             -------------------Ee-----CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCc
Q 024325          135 -------------------KL-----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKP  190 (269)
Q Consensus       135 -------------------~~-----~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~  190 (269)
                                         ..     ...+.+|||||+.....       .......|+   ..+|++++|+|++.+.+.
T Consensus       147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~-------~~~~~~~~i---~~aD~vL~Vvda~~~~s~  216 (695)
T 2j69_A          147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA-------RNELSLGYV---NNCHAILFVMRASQPCTL  216 (695)
T ss_dssp             HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT-------CHHHHTHHH---HSSSEEEEEEETTSTTCH
T ss_pred             HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh-------HHHHHHHHH---HhCCEEEEEEeCCCccch
Confidence                               00     04699999999754211       112222333   349999999999887776


Q ss_pred             chHHHHH-HHHhhCCcEEEEEecCCCCCch--------HHHHHHHHHH----HHHHhcCC------CCCCeEEeeCC---
Q 024325          191 RDHELIS-LMERSQTKYQVVLTKTDTVFPI--------DVARRAMQIE----ESLKANNS------LVQPVMMVSSK---  248 (269)
Q Consensus       191 ~~~~~~~-~l~~~~~p~iiv~NK~Dl~~~~--------~~~~~~~~~~----~~~~~~~~------~~~~vi~vSa~---  248 (269)
                      .+..++. .+...+.|+++|+||+|+....        +.......+.    ..+.....      ...++++|||+   
T Consensus       217 ~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al  296 (695)
T 2j69_A          217 GERRYLENYIKGRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQAL  296 (695)
T ss_dssp             HHHHHHHHHTTTSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHH
T ss_pred             hHHHHHHHHHHhhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHH
Confidence            6665553 4555578999999999997543        2222222222    22222111      23579999999   


Q ss_pred             -----------CCCCHHHHHHHHHHhhh
Q 024325          249 -----------SGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       249 -----------~g~gi~~L~~~i~~~~~  265 (269)
                                 +|.|+++|++.|.+.+.
T Consensus       297 ~~~~~~~~~~~~~~Gi~~L~~~L~~~l~  324 (695)
T 2j69_A          297 RRRLKNPQADLDGTGFPKFMDSLNTFLT  324 (695)
T ss_dssp             HHHHHCTTCCCTTSSHHHHHHHHHHHHH
T ss_pred             HhhccCchhhhhccCHHHHHHHHHHHHH
Confidence                       99999999999988764

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.84  E-value=2.3e-20  Score=147.92  Aligned_cols=149  Identities=9%  Similarity=0.036  Sum_probs=93.1

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe--CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~  169 (269)
                      ..+|+++|.+|+|||||+|+|++. ......+..+..........  ...+.+|||||...               ..|+
T Consensus         7 ~~ki~~vG~~~vGKTsli~~l~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~---------------~~~~   70 (178)
T 2iwr_A            7 ELRLGVLGDARSGKSSLIHRFLTG-SYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD---------------AKFS   70 (178)
T ss_dssp             EEEEEEECCGGGCHHHHHHHHHHS-CCCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC---------------HHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC-CCCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch---------------hHHH
Confidence            468999999999999999999987 32222222222211111111  24588999999743               1122


Q ss_pred             hcccccceEEEEEeCCCCCCcch-HHHHHHHHh------hCCcEEEEEecCCCCC--c--hHHHHHHHHHHHHHHhcCCC
Q 024325          170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER------SQTKYQVVLTKTDTVF--P--IDVARRAMQIEESLKANNSL  238 (269)
Q Consensus       170 ~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~------~~~p~iiv~NK~Dl~~--~--~~~~~~~~~~~~~~~~~~~~  238 (269)
                      .   .+|++++|+|......... ..+++++..      .++|+++|+||+|+..  .  ...... ..+   ....  .
T Consensus        71 ~---~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~-~~~---~~~~--~  141 (178)
T 2iwr_A           71 G---WADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARA-RAL---XADM--K  141 (178)
T ss_dssp             H---HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHH-HHH---HHHH--S
T ss_pred             H---hCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHH-HHH---HHhh--c
Confidence            2   2899999999875322222 122223332      2689999999999942  1  111111 111   1111  1


Q ss_pred             CCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          239 VQPVMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       239 ~~~vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      ..+++++||++|.|+++++++|.+.+.
T Consensus       142 ~~~~~~~Sa~~~~~i~~lf~~l~~~~~  168 (178)
T 2iwr_A          142 RCSYYETXATYGLNVDRVFQEVAQKVV  168 (178)
T ss_dssp             SEEEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred             CCeEEEEeccccCCHHHHHHHHHHHHH
Confidence            368999999999999999999987664

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.84  E-value=2.6e-20  Score=149.69  Aligned_cols=155  Identities=14%  Similarity=0.073  Sum_probs=98.3

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCcccc-CCCCCceeEeeEEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRT-SDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~-s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      .++|+++|.+|+|||||+|+|++.. .... .+..+++.......   .+..+.+|||||.....          .+...
T Consensus        25 ~~ki~v~G~~~~GKSsLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~~   93 (193)
T 2oil_A           25 VFKVVLIGESGVGKTNLLSRFTRNE-FSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYR----------AITSA   93 (193)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSC-CCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTC----------TTHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCC-CCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhh----------hhhHH
Confidence            4689999999999999999999873 2221 12223322222222   24568999999985421          12223


Q ss_pred             HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeE
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM  243 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi  243 (269)
                      ++.   .+|++++|+|+........ ..++..+..   .+.|+++|+||+|+........  .........   ...+++
T Consensus        94 ~~~---~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~~~---~~~~~~  165 (193)
T 2oil_A           94 YYR---GAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPT--EEARMFAEN---NGLLFL  165 (193)
T ss_dssp             HHT---TCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCH--HHHHHHHHH---TTCEEE
T ss_pred             Hhc---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCH--HHHHHHHHH---cCCEEE
Confidence            333   3899999999875322111 234444443   3689999999999975322110  111112221   246899


Q ss_pred             EeeCCCCCCHHHHHHHHHHhhh
Q 024325          244 MVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       244 ~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      ++||++|.|+++++++|.+.+.
T Consensus       166 ~~Sa~~~~gi~~l~~~l~~~i~  187 (193)
T 2oil_A          166 ETSALDSTNVELAFETVLKEIF  187 (193)
T ss_dssp             EECTTTCTTHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999987653

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.84  E-value=1.5e-20  Score=166.34  Aligned_cols=147  Identities=17%  Similarity=0.244  Sum_probs=108.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE---EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHh
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~---~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~  170 (269)
                      +|+++|.+|+|||||+++|+..          |+|.+..+.   ..+..+.+|||||+.+.             ......
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~~~----------giTi~~~~~~~~~~~~~i~iiDtPGh~~f-------------~~~~~~   79 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLGKK----------GTSSDITMYNNDKEGRNMVFVDAHSYPKT-------------LKSLIT   79 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTSEE----------EEESSSEEEEECSSSSEEEEEECTTTTTC-------------HHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhC----------CEEEEeeEEEEecCCeEEEEEECCChHHH-------------HHHHHH
Confidence            8999999999999999999932          344444332   23667999999998432             112222


Q ss_pred             cccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcE-EEEEe-cCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEE--ee
Q 024325          171 TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLT-KTDTVFPIDVARRAMQIEESLKANNSLVQPVMM--VS  246 (269)
Q Consensus       171 ~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~-iiv~N-K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~--vS  246 (269)
                      ....+|++++|+| ..+...+..+.+..+...++|. ++|+| |+|+ ++.........+.+.+........|+++  +|
T Consensus        80 ~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~S  157 (370)
T 2elf_A           80 ALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTN  157 (370)
T ss_dssp             HHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCC
T ss_pred             HHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccc
Confidence            2344999999999 8788877888888888888998 99999 9999 6544444444555544333223478999  99


Q ss_pred             CCC---CCCHHHHHHHHHHhhh
Q 024325          247 SKS---GAGIRSLRTVLSKIAR  265 (269)
Q Consensus       247 a~~---g~gi~~L~~~i~~~~~  265 (269)
                      |++   |.|+++|++.|.+.+.
T Consensus       158 A~~~~~g~gi~~L~~~l~~~~~  179 (370)
T 2elf_A          158 KSAKNPFEGVDELKARINEVAE  179 (370)
T ss_dssp             TTSSSTTTTHHHHHHHHHHHHH
T ss_pred             cccCcCCCCHHHHHHHHHhhcc
Confidence            999   9999999999987764

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.84  E-value=1.9e-20  Score=150.14  Aligned_cols=156  Identities=19%  Similarity=0.186  Sum_probs=95.0

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe---CCcEEEEcCCCCCCcchhHHHHHHHH-HHHH
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWE-ELVK  166 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~-~~~~  166 (269)
                      ..++|+++|.+|+|||||+|+|++........+..+++........   ...+.+|||||...          +. .+..
T Consensus        19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~~   88 (189)
T 1z06_A           19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER----------FRKSMVQ   88 (189)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHH----------HHTTTHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchh----------hhhhhhH
Confidence            3469999999999999999999986311111222222222222222   24789999999621          12 2333


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHH-HHHHHHHHHHHHhcCCCCC
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDV-ARRAMQIEESLKANNSLVQ  240 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~  240 (269)
                      .++.   .+|++++|+|+........ ..++..+..    .+.|+++|+||+|+....+. ....+.+   ...   ...
T Consensus        89 ~~~~---~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~---~~~---~~~  159 (189)
T 1z06_A           89 HYYR---NVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKF---ADT---HSM  159 (189)
T ss_dssp             HHHT---TCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHH---HHH---TTC
T ss_pred             HHhc---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHH---HHH---cCC
Confidence            4433   4999999999875322111 233333332    36899999999999654221 1111111   111   246


Q ss_pred             CeEEeeCCCC---CCHHHHHHHHHHhhh
Q 024325          241 PVMMVSSKSG---AGIRSLRTVLSKIAR  265 (269)
Q Consensus       241 ~vi~vSa~~g---~gi~~L~~~i~~~~~  265 (269)
                      +++++||++|   .|+++++++|.+.+.
T Consensus       160 ~~~~~Sa~~~~~~~~i~~l~~~l~~~i~  187 (189)
T 1z06_A          160 PLFETSAKNPNDNDHVEAIFMTLAHKLK  187 (189)
T ss_dssp             CEEECCSSSGGGGSCHHHHHHHHC----
T ss_pred             EEEEEeCCcCCcccCHHHHHHHHHHHHh
Confidence            8999999999   999999999977653

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.84  E-value=4.4e-20  Score=149.72  Aligned_cols=154  Identities=13%  Similarity=0.100  Sum_probs=95.4

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe--eEEEeC---CcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~--~~~~~~---~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      .++|+++|.+|+|||||+|+|++.. .. ....+.++.+.  .....+   ..+.+|||||....          ..+..
T Consensus        29 ~~ki~vvG~~~vGKSsli~~l~~~~-~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~~   96 (201)
T 2hup_A           29 LFKLVLVGDASVGKTCVVQRFKTGA-FS-ERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERF----------RTITQ   96 (201)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSC-C-----------CEEEEEEEETTEEEEEEEECCTTCGGG----------HHHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHhhCC-CC-CCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhH----------HHHHH
Confidence            4689999999999999999999873 21 11122222222  122222   47899999997321          22333


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCC-C
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ-P  241 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~  241 (269)
                      .++.   .+|++++|+|+........ ..++..+..   .+.|+++|+||+|+.......  ...+.+.....   .. +
T Consensus        97 ~~~~---~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~--~~~~~~~~~~~---~~~~  168 (201)
T 2hup_A           97 SYYR---SANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVS--LAEAQSLAEHY---DILC  168 (201)
T ss_dssp             HHHT---TCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC--HHHHHHHHHHT---TCSE
T ss_pred             HHHh---hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccC--HHHHHHHHHHc---CCCE
Confidence            4443   3999999999874322111 234444443   358999999999997532111  01112222221   34 8


Q ss_pred             eEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          242 VMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       242 vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      ++++||++|.|+++++++|.+.+.
T Consensus       169 ~~~~SA~~g~gi~~l~~~l~~~i~  192 (201)
T 2hup_A          169 AIETSAKDSSNVEEAFLRVATELI  192 (201)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999988764

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.84  E-value=5.7e-20  Score=150.51  Aligned_cols=157  Identities=12%  Similarity=0.063  Sum_probs=91.3

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee--EEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~--~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      ..+|+++|.+|+|||||+|+|++..   ....+.+|+.+..  ....   ...+.+|||||...          +..+..
T Consensus        34 ~~ki~vvG~~~vGKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~----------~~~~~~  100 (214)
T 2j1l_A           34 SVKVVLVGDGGCGKTSLLMVFADGA---FPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDD----------YDRLRP  100 (214)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHC----------CCCCCEEEEEEEEETTEEEEEEEEEC---------------------
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcCC---CCCCCCCccceeEEEEEEECCEEEEEEEEECCCchh----------hhHHHH
Confidence            4689999999999999999999862   2233333333221  1111   23689999999632          122222


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcch--HHHHHHHHhh--CCcEEEEEecCCCCCchHHHHHH----------HHHHHHH
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPIDVARRA----------MQIEESL  232 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~--~~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~~~----------~~~~~~~  232 (269)
                      .++   ..+|++++|+|.+.......  ..++..+...  ++|+++|+||+|+..........          ....+..
T Consensus       101 ~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~  177 (214)
T 2j1l_A          101 LFY---PDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMA  177 (214)
T ss_dssp             -------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred             HHh---ccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHH
Confidence            333   34999999999875322211  1244444432  68999999999998764332211          1112222


Q ss_pred             HhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325          233 KANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       233 ~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      ...  ...+++++||++|.|+++++++|.+.+..
T Consensus       178 ~~~--~~~~~~~~SA~~g~gi~el~~~l~~~~~~  209 (214)
T 2j1l_A          178 RSV--GAVAYLECSARLHDNVHAVFQEAAEVALS  209 (214)
T ss_dssp             HHT--TCSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             Hhc--CCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence            221  12389999999999999999999887653

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.84  E-value=6.5e-21  Score=151.73  Aligned_cols=153  Identities=16%  Similarity=0.155  Sum_probs=77.2

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE--EEe-C--CcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~--~~~-~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      .++|+++|.+|+|||||+|+|++..  ......|+++.+...  ... +  ..+.+|||||....          ..+. 
T Consensus         8 ~~ki~v~G~~~~GKssl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~-   74 (183)
T 2fu5_C            8 LFKLLLIGDSGVGKTCVLFRFSEDA--FNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERF----------RTIT-   74 (183)
T ss_dssp             EEEEEEECCCCC------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-------------------C-
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhh----------hhhH-
Confidence            4689999999999999999999762  222223334444322  222 2  56899999996321          1111 


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHH-HHHHHHHHHHHHhcCCCCCC
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDV-ARRAMQIEESLKANNSLVQP  241 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~  241 (269)
                        ......+|++++|+|++....... ..++..+..   .+.|+++|+||+|+...... ......+.+   ..   ..+
T Consensus        75 --~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~---~~---~~~  146 (183)
T 2fu5_C           75 --TAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLAL---DY---GIK  146 (183)
T ss_dssp             --CTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHH---HH---TCE
T ss_pred             --HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHH---Hc---CCe
Confidence              122345999999999875322111 234444443   36899999999999753221 111112211   11   368


Q ss_pred             eEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          242 VMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       242 vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      ++++||++|.|+++++++|.+.+.
T Consensus       147 ~~~~Sa~~~~~i~~l~~~l~~~i~  170 (183)
T 2fu5_C          147 FMETSAKANINVENAFFTLARDIK  170 (183)
T ss_dssp             EEECCC---CCHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999987664

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.84  E-value=3.3e-20  Score=150.72  Aligned_cols=154  Identities=16%  Similarity=0.099  Sum_probs=98.2

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee--EEEeC---CcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~--~~~~~---~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      .++|+++|.+|+|||||+|+|++..  ......++++.+..  ....+   ..+.+|||||.....          .+..
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~~   75 (206)
T 2bcg_Y            8 LFKLLLIGNSGVGKSCLLLRFSDDT--YTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFR----------TITS   75 (206)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCC--CCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTT----------CCCG
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHH----------HHHH
Confidence            4689999999999999999999873  22223333333332  22222   368999999974321          1111


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  242 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  242 (269)
                         .....+|++++|+|+........ ..++..+..   .+.|+++|+||+|+........  .........   ...++
T Consensus        76 ---~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~~~---~~~~~  147 (206)
T 2bcg_Y           76 ---SYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEY--DVAKEFADA---NKMPF  147 (206)
T ss_dssp             ---GGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCH--HHHHHHHHH---TTCCE
T ss_pred             ---HhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCH--HHHHHHHHH---cCCeE
Confidence               12334899999999875322211 233444433   3589999999999976422111  111111111   24689


Q ss_pred             EEeeCCCCCCHHHHHHHHHHhhh
Q 024325          243 MMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       243 i~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      +++||++|.|+++++++|.+.+.
T Consensus       148 ~~~Sa~~g~gi~~l~~~l~~~i~  170 (206)
T 2bcg_Y          148 LETSALDSTNVEDAFLTMARQIK  170 (206)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999988764

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.83  E-value=3e-20  Score=148.67  Aligned_cols=153  Identities=8%  Similarity=0.001  Sum_probs=95.6

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe--eEEEeC--CcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~--~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      ...+|+++|.+|+|||||+|++++.. .  ...+..|..+.  .....+  ..+.+|||||....          .    
T Consensus        19 ~~~ki~ivG~~~vGKSsL~~~~~~~~-~--~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~----   81 (184)
T 3ihw_A           19 PELKVGIVGNLSSGKSALVHRYLTGT-Y--VQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPEL----------Q----   81 (184)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHSS-C--CCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCH----------H----
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCC-C--CCCcCCCcceEEEEEEECCEEEEEEEEECCCChhh----------h----
Confidence            45799999999999999999999873 1  22222232222  111112  45778999997431          1    


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCC
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP  241 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (269)
                       ++.   .+|++++|+|.+....... ..++..+..    .+.|+++|+||+|+..............+.....  ...+
T Consensus        82 -~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~--~~~~  155 (184)
T 3ihw_A           82 -FAA---WVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDL--KRCT  155 (184)
T ss_dssp             -HHH---HCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHT--TTCE
T ss_pred             -eec---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHc--CCCe
Confidence             222   2899999999875322222 334444544    3579999999999952111000001112222221  1368


Q ss_pred             eEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325          242 VMMVSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       242 vi~vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      ++++||++|.|+++++++|.+.+..
T Consensus       156 ~~e~Sa~~~~gv~~lf~~l~~~i~~  180 (184)
T 3ihw_A          156 YYETCATYGLNVERVFQDVAQKVVA  180 (184)
T ss_dssp             EEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred             EEEecCCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999887654

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.83  E-value=8.8e-21  Score=153.42  Aligned_cols=159  Identities=11%  Similarity=-0.012  Sum_probs=96.4

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEEeC--CcEEEEcCCCCCCcchhHHHHHHHHHH
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEEL  164 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~  164 (269)
                      ...++|+++|.+|+|||||+|+|++..   +...+++|+.+..   +...+  ..+.+|||||.....          .+
T Consensus        18 ~~~~ki~~~G~~~~GKssl~~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~   84 (201)
T 2q3h_A           18 GRGVKCVLVGDGAVGKTSLVVSYTTNG---YPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFD----------KL   84 (201)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHC-----------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCS----------SS
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCC---CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHH----------HH
Confidence            345799999999999999999999872   4455555654432   11122  357799999974321          11


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCcchH--HHHHHHHhh--CCcEEEEEecCCCCCchHHHHH----------HHHHHH
Q 024325          165 VKEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTDTVFPIDVARR----------AMQIEE  230 (269)
Q Consensus       165 ~~~~~~~~~~~d~vl~vid~~~~~~~~~~--~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~~----------~~~~~~  230 (269)
                      ...   ....+|++++|+|++......+.  .++..+...  +.|+++|+||+|+.........          ......
T Consensus        85 ~~~---~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~  161 (201)
T 2q3h_A           85 RPL---CYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKL  161 (201)
T ss_dssp             GGG---GGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH
T ss_pred             hHh---hcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHH
Confidence            111   23348999999998753222221  344445443  7899999999999754211000          011111


Q ss_pred             HHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325          231 SLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       231 ~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      .....  ...+++++||++|.|+++++++|.+.+..
T Consensus       162 ~~~~~--~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~  195 (201)
T 2q3h_A          162 LAEEI--KAASYIECSALTQKNLKEVFDAAIVAGIQ  195 (201)
T ss_dssp             HHHHH--TCSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHhc--CCcEEEEEecCCCCCHHHHHHHHHHHHhc
Confidence            11111  12479999999999999999999887643

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.83  E-value=4.3e-21  Score=155.52  Aligned_cols=156  Identities=15%  Similarity=0.063  Sum_probs=97.8

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE--E---EeCCcEEEEcCCCCCCcchhHHHHHHHHH
Q 024325           89 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--F---KLGTKLCLVDLPGYGFAYAKEEVKDAWEE  163 (269)
Q Consensus        89 ~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~--~---~~~~~~~lvDtpG~~~~~~~~~~~~~~~~  163 (269)
                      ....++|+++|.+|+|||||+|+|++.. .  ...+.+++.+...  .   ..+..+.+|||||......          
T Consensus        21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~-~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------   87 (201)
T 3oes_A           21 LVRYRKVVILGYRCVGKTSLAHQFVEGE-F--SEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSI----------   87 (201)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSC-C--CSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCC----------
T ss_pred             CCCcEEEEEECCCCcCHHHHHHHHHhCC-C--CCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHH----------
Confidence            3456799999999999999999999873 2  2333334333211  1   1245679999999743211          


Q ss_pred             HHHHHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHHH-HHHHHHHHHHhcCC
Q 024325          164 LVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVAR-RAMQIEESLKANNS  237 (269)
Q Consensus       164 ~~~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~  237 (269)
                      +..   .....+|++++|+|......... ..++..+..    .++|+++|+||+|+........ ....+....     
T Consensus        88 ~~~---~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-----  159 (201)
T 3oes_A           88 LPY---SFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESW-----  159 (201)
T ss_dssp             CCG---GGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHH-----
T ss_pred             HHH---HHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHh-----
Confidence            111   12334999999999874221111 223333332    3689999999999975432211 111222111     


Q ss_pred             CCCCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325          238 LVQPVMMVSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       238 ~~~~vi~vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                       ..+++++||++|.|+++++++|.+.+..
T Consensus       160 -~~~~~~~Sa~~~~~v~~l~~~l~~~i~~  187 (201)
T 3oes_A          160 -GATFMESSARENQLTQGIFTKVIQEIAR  187 (201)
T ss_dssp             -TCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             -CCeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence             4689999999999999999999887654

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.83  E-value=2.3e-20  Score=152.00  Aligned_cols=156  Identities=12%  Similarity=0.038  Sum_probs=96.3

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCcee-Eee-EEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ-TIN-FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~-~~~-~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      ++|+++|.+|+|||||+|+|++.. .  ...+.+++. +.. ....   ...+.+|||||.....          .+.. 
T Consensus        26 ~ki~vvG~~~~GKSsli~~l~~~~-~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~-   91 (207)
T 2fv8_A           26 KKLVVVGDGACGKTCLLIVFSKDE-F--PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYD----------RLRP-   91 (207)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSS-C--C-------CCEEEEEEEETTEEEEEEEEECTTCTTCT----------TTGG-
T ss_pred             cEEEEECcCCCCHHHHHHHHhcCC-C--CCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHH----------HHHH-
Confidence            589999999999999999999873 2  122222222 221 1122   2468999999974321          1111 


Q ss_pred             HHhcccccceEEEEEeCCCCCCcc--hHHHHHHHHhh--CCcEEEEEecCCCCCchHHHHHHH----------HHHHHHH
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPR--DHELISLMERS--QTKYQVVLTKTDTVFPIDVARRAM----------QIEESLK  233 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~--~~~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~~~~----------~~~~~~~  233 (269)
                        .....+|++++|+|........  ...++..+...  +.|+++|+||+|+...........          .......
T Consensus        92 --~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~  169 (207)
T 2fv8_A           92 --LSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAV  169 (207)
T ss_dssp             --GGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHH
T ss_pred             --hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHH
Confidence              2234599999999987532111  13445555544  789999999999986543322111          1111111


Q ss_pred             hcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325          234 ANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       234 ~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      ..  ...+++++||++|.|+++|+++|.+.+..
T Consensus       170 ~~--~~~~~~~~SA~~g~gi~el~~~l~~~i~~  200 (207)
T 2fv8_A          170 RI--QAYDYLECSAKTKEGVREVFETATRAALQ  200 (207)
T ss_dssp             HT--TCSEEEECCTTTCTTHHHHHHHHHHHHHS
T ss_pred             hc--CCCEEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence            11  12378999999999999999999887643

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.83  E-value=2.1e-20  Score=151.55  Aligned_cols=155  Identities=12%  Similarity=0.085  Sum_probs=97.5

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe--eEEEe--CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~--~~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      ++|+++|.+|+|||||+|+|++.. . .....+.++.+.  .+...  ...+.+|||||....          ..+..  
T Consensus        26 ~ki~vvG~~~~GKSsli~~l~~~~-~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~~--   91 (201)
T 2gco_A           26 KKLVIVGDGACGKTCLLIVFSKDQ-F-PEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY----------DRLRP--   91 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSS-C-CSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGG----------TTTGG--
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCc-C-CcccCCcccceEEEEEEECCEEEEEEEEECCCchhH----------HHHHH--
Confidence            589999999999999999999873 2 112222222222  11111  236899999996321          11111  


Q ss_pred             HhcccccceEEEEEeCCCCCCcch--HHHHHHHHhh--CCcEEEEEecCCCCCchHHHHHH----------HHHHHHHHh
Q 024325          169 VSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPIDVARRA----------MQIEESLKA  234 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~~~~~~~--~~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~~~----------~~~~~~~~~  234 (269)
                       .....+|++++|+|.........  ..++..+...  +.|+++|+||+|+..........          .........
T Consensus        92 -~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  170 (201)
T 2gco_A           92 -LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANR  170 (201)
T ss_dssp             -GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHH
T ss_pred             -HhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHh
Confidence             22345999999999875322111  2445555544  78999999999998764322111          111111111


Q ss_pred             cCCCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325          235 NNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       235 ~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      .  ...+++++||++|.|+++++++|.+.+
T Consensus       171 ~--~~~~~~~~SA~~g~gi~~l~~~i~~~~  198 (201)
T 2gco_A          171 I--SAFGYLECSAKTKEGVREVFEMATRAG  198 (201)
T ss_dssp             T--TCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             C--CCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence            1  123799999999999999999998865

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.83  E-value=1.3e-19  Score=150.90  Aligned_cols=169  Identities=16%  Similarity=0.180  Sum_probs=103.8

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCC--CceeEeeEE---EeCCcEEEEcCCCCCCcchhHHHHHHHHHH
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP--GLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEEL  164 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~--gtt~~~~~~---~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~  164 (269)
                      ...++|+++|.+|+|||||+|+|++..  ...+..+  ++|.++...   ..+..+.+|||||+.+......  +....+
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~g~~--~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~--~~~~~~  102 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSILGRK--VFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNA--ETSKEI  102 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHTSC--CSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CH--HHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHcCCC--cCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHH--HHHHHH
Confidence            456799999999999999999999983  2444444  566665432   2366899999999976532211  122344


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHH-----hhCCcEEEEEecCCCCCchHHHHHHH----HHHHHHHhc
Q 024325          165 VKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLME-----RSQTKYQVVLTKTDTVFPIDVARRAM----QIEESLKAN  235 (269)
Q Consensus       165 ~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~-----~~~~p~iiv~NK~Dl~~~~~~~~~~~----~~~~~~~~~  235 (269)
                      ...+......+|++++|+|+. .+...+..++..+.     ....|+++|+||+|+...........    .+++....+
T Consensus       103 ~~~~~~~~~~~~~~l~v~d~~-~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~  181 (239)
T 3lxx_A          103 IRCILLTSPGPHALLLVVPLG-RYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIF  181 (239)
T ss_dssp             HHHHHHTTTCCSEEEEEEETT-CCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHH
T ss_pred             HHHHHhcCCCCcEEEEEeeCC-CCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHc
Confidence            455555556789999999987 34555555555543     23469999999999987655442221    233333333


Q ss_pred             CCCCCCeEEeeCCCC-----CCHHHHHHHHHHhhhh
Q 024325          236 NSLVQPVMMVSSKSG-----AGIRSLRTVLSKIARF  266 (269)
Q Consensus       236 ~~~~~~vi~vSa~~g-----~gi~~L~~~i~~~~~~  266 (269)
                         ...++.+++..+     .|+.+|++.|...+..
T Consensus       182 ---~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~  214 (239)
T 3lxx_A          182 ---GDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE  214 (239)
T ss_dssp             ---SSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---CCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence               345677777654     7999999998887754

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.83  E-value=3.4e-20  Score=149.14  Aligned_cols=155  Identities=12%  Similarity=0.011  Sum_probs=99.9

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEEeC--CcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      .++|+++|.+|+|||||+|+|++..   ....+.+|+.+..   +...+  ..+.+|||||.....          .+..
T Consensus        18 ~~ki~v~G~~~~GKssli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----------~~~~   84 (194)
T 2atx_A           18 MLKCVVVGDGAVGKTCLLMSYANDA---FPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYD----------RLRP   84 (194)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSS---CCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSST----------TTGG
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCC---CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchh----------HHHH
Confidence            4689999999999999999999872   3344444443322   11122  468899999975321          1111


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcch--HHHHHHHHhh--CCcEEEEEecCCCCCchHHHHH----------HHHHHHHH
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPIDVARR----------AMQIEESL  232 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~--~~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~~----------~~~~~~~~  232 (269)
                         .....+|++++|+|+........  ..++..+...  ++|+++|+||+|+.........          .....+..
T Consensus        85 ---~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~  161 (194)
T 2atx_A           85 ---LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLA  161 (194)
T ss_dssp             ---GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHH
T ss_pred             ---HhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHH
Confidence               22345999999999875322222  1345555554  7899999999999865322110          01111111


Q ss_pred             HhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325          233 KANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       233 ~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      ....  ..+++++||++|.|+++++++|.+.+
T Consensus       162 ~~~~--~~~~~~~Sa~~g~gi~~l~~~l~~~i  191 (194)
T 2atx_A          162 KEIG--ACCYVECSALTQKGLKTVFDEAIIAI  191 (194)
T ss_dssp             HHHT--CSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHcC--CcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence            1111  23899999999999999999998765

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.83  E-value=7e-20  Score=147.95  Aligned_cols=158  Identities=14%  Similarity=0.059  Sum_probs=98.4

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEEe--CCcEEEEcCCCCCCcchhHHHHHHHHHH
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEEL  164 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~  164 (269)
                      ...++|+++|.+|+|||||+|+|++...  .....++++.+..   +...  ...+.+|||||.....         ..+
T Consensus        21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~---------~~~   89 (195)
T 3cbq_A           21 DGIFKVMLVGESGVGKSTLAGTFGGLQG--DSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAG---------GWL   89 (195)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHTCCEEC--CGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGG---------HHH
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhccC--CccCCCCcccceEEEEEEECCEEEEEEEEecCCCccch---------hhh
Confidence            3457999999999999999999986521  1223344443322   1112  2357899999984321         012


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCcc-hHHHHHHHHh----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCC
Q 024325          165 VKEYVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLV  239 (269)
Q Consensus       165 ~~~~~~~~~~~d~vl~vid~~~~~~~~-~~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  239 (269)
                      ...|+.   .+|++++|+|........ -..++..+..    .+.|+++|+||+|+........  ..........   .
T Consensus        90 ~~~~~~---~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~--~~~~~~a~~~---~  161 (195)
T 3cbq_A           90 RDHCLQ---TGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSL--EEGRHLAGTL---S  161 (195)
T ss_dssp             HHHHHH---HCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCH--HHHHHHHHHT---T
T ss_pred             HHHhhc---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCH--HHHHHHHHHh---C
Confidence            223333   289999999987432111 1233333433    3689999999999975322110  1111111111   3


Q ss_pred             CCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325          240 QPVMMVSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       240 ~~vi~vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      .+++++||++|.|+++++++|.+.+..
T Consensus       162 ~~~~e~Sa~~~~~v~~lf~~l~~~i~~  188 (195)
T 3cbq_A          162 CKHIETSAALHHNTRELFEGAVRQIRL  188 (195)
T ss_dssp             CEEEEEBTTTTBSHHHHHHHHHHHHHT
T ss_pred             CEEEEEcCCCCCCHHHHHHHHHHHHHH
Confidence            689999999999999999999887654

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.83  E-value=2.4e-20  Score=151.10  Aligned_cols=154  Identities=12%  Similarity=0.119  Sum_probs=93.0

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe--eEEEeC---CcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~--~~~~~~---~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      .++|+++|.+|+|||||+|+|++.. . .....+.++.+.  .....+   ..+.+|||||...          +..+..
T Consensus        25 ~~ki~v~G~~~~GKSsLi~~l~~~~-~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~----------~~~~~~   92 (200)
T 2o52_A           25 LFKFLVIGSAGTGKSCLLHQFIENK-F-KQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER----------FRSVTR   92 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHC--------------CCEEEEEEEETTEEEEEEEECCTTHHH----------HSCCCH
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCC-C-CccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHh----------HHHHHH
Confidence            4689999999999999999999873 2 222223233222  222222   4789999999521          112222


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  242 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  242 (269)
                      .++.   .+|++++|+|+........ ..++..+..   .+.|+++|+||+|+........  .........   ...++
T Consensus        93 ~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~--~~~~~~~~~---~~~~~  164 (200)
T 2o52_A           93 SYYR---GAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTF--LEASRFAQE---NELMF  164 (200)
T ss_dssp             HHHT---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCH--HHHHHHHHH---TTCEE
T ss_pred             HHhc---cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCH--HHHHHHHHH---cCCEE
Confidence            3333   3999999999875322111 233333333   3689999999999964322110  111111221   24689


Q ss_pred             EEeeCCCCCCHHHHHHHHHHhhh
Q 024325          243 MMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       243 i~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      +++||++|.|+++++++|.+.+.
T Consensus       165 ~~~SA~~g~gi~~l~~~l~~~i~  187 (200)
T 2o52_A          165 LETSALTGENVEEAFLKCARTIL  187 (200)
T ss_dssp             EEECTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999987653

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.83  E-value=1.6e-19  Score=145.54  Aligned_cols=153  Identities=14%  Similarity=0.075  Sum_probs=97.1

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeE-ee--EEEe--CCcEEEEcCCCCCCcchhHHHHHHHHHHH
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-IN--FFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~-~~--~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~~  165 (269)
                      ..++|+++|.+|+|||||+|+|++.. .  ...+.+|+.+ ..  +...  ...+.+|||||....       ..    .
T Consensus        27 ~~~ki~v~G~~~vGKSsli~~l~~~~-~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~----~   92 (196)
T 2atv_A           27 AEVKLAIFGRAGVGKSALVVRFLTKR-F--IWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDT-------IQ----R   92 (196)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHSC-C--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCC-------HH----H
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCC-C--CcccCCCCCceEEEEEEECCEEEEEEEEECCCCCcc-------cc----h
Confidence            35799999999999999999999873 2  2223333222 11  1111  346899999998541       11    1


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHH-HHHHHHHHHHHHhcCCCC
Q 024325          166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDV-ARRAMQIEESLKANNSLV  239 (269)
Q Consensus       166 ~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~  239 (269)
                      ..++..   +|++++|+|++....... ..++..+..    .+.|+++|+||+|+...... ......+.+   ..   .
T Consensus        93 ~~~~~~---~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~---~~---~  163 (196)
T 2atv_A           93 EGHMRW---GEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLAT---EL---A  163 (196)
T ss_dssp             HHHHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH---HH---T
T ss_pred             hhhhcc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHH---Hh---C
Confidence            222222   899999999875322111 223333332    47899999999999753221 111111211   11   4


Q ss_pred             CCeEEeeCCCCC-CHHHHHHHHHHhhhh
Q 024325          240 QPVMMVSSKSGA-GIRSLRTVLSKIARF  266 (269)
Q Consensus       240 ~~vi~vSa~~g~-gi~~L~~~i~~~~~~  266 (269)
                      .+++++||++|. |+++++++|.+.+..
T Consensus       164 ~~~~~~Sa~~g~~gi~~l~~~l~~~i~~  191 (196)
T 2atv_A          164 CAFYECSACTGEGNITEIFYELCREVRR  191 (196)
T ss_dssp             SEEEECCTTTCTTCHHHHHHHHHHHHHH
T ss_pred             CeEEEECCCcCCcCHHHHHHHHHHHHHh
Confidence            689999999999 999999999887654

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.83  E-value=1.1e-20  Score=164.92  Aligned_cols=158  Identities=15%  Similarity=0.163  Sum_probs=99.2

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee-EEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHh
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~-~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~  170 (269)
                      .++|+++|.+|+|||||+|+|++.. .  +...|.+..+.. +...+..+.+|||||....          ..+...++.
T Consensus       165 ~~kI~ivG~~~vGKSsLl~~l~~~~-~--~~~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~~~~~~  231 (329)
T 3o47_A          165 EMRILMVGLDAAGKTTILYKLKLGE-I--VTTIPTIGFNVETVEYKNISFTVWDVGGQDKI----------RPLWRHYFQ  231 (329)
T ss_dssp             SEEEEEEESTTSSHHHHHHHTCSSC-C--EEEEEETTEEEEEEEETTEEEEEEECC---------------CCSHHHHHT
T ss_pred             cceEEEECCCCccHHHHHHHHhCCC-C--CCcccccceEEEEEecCcEEEEEEECCCCHhH----------HHHHHHHhc
Confidence            3589999999999999999999873 2  233331212221 2223567999999995321          122233333


Q ss_pred             cccccceEEEEEeCCCCCCcc--hHHHHHHHHhh---CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEe
Q 024325          171 TRVSLKRVCLLIDTKWGVKPR--DHELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV  245 (269)
Q Consensus       171 ~~~~~d~vl~vid~~~~~~~~--~~~~~~~l~~~---~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v  245 (269)
                         .+|++++|+|+.......  ...+...+...   ++|+++|+||+|+............+..  ........+++++
T Consensus       232 ---~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~--~~~~~~~~~~~~v  306 (329)
T 3o47_A          232 ---NTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL--HSLRHRNWYIQAT  306 (329)
T ss_dssp             ---TEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTC--TTCCSSCEEEEEC
T ss_pred             ---cCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhch--hhhhcCCCEEEEE
Confidence               399999999997533222  22333333332   7899999999999876544333222211  0111234579999


Q ss_pred             eCCCCCCHHHHHHHHHHhhhhh
Q 024325          246 SSKSGAGIRSLRTVLSKIARFA  267 (269)
Q Consensus       246 Sa~~g~gi~~L~~~i~~~~~~~  267 (269)
                      ||++|.|+++|+++|.+.+...
T Consensus       307 SAk~g~gi~el~~~l~~~l~~~  328 (329)
T 3o47_A          307 CATSGDGLYEGLDWLSNQLRNQ  328 (329)
T ss_dssp             BTTTTBTHHHHHHHHHHHHTC-
T ss_pred             ECCCCcCHHHHHHHHHHHHHhc
Confidence            9999999999999999887643

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.83  E-value=3.7e-20  Score=151.05  Aligned_cols=157  Identities=18%  Similarity=0.048  Sum_probs=99.8

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEEeC--CcEEEEcCCCCCCcchhHHHHHHHHHHH
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~  165 (269)
                      ..++|+++|.+|+|||||+++|++..   +...+.+|+.+..   +...+  ..+.+|||||.....          .+.
T Consensus         8 ~~~ki~i~G~~~~GKTsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~   74 (212)
T 2j0v_A            8 KFIKCVTVGDGAVGKTCMLICYTSNK---FPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYS----------RLR   74 (212)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSC---CCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCC----------C--
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCC---CCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHH----------HHH
Confidence            44789999999999999999999862   2344444443321   11112  368999999974321          111


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcch--HHHHHHHHhh--CCcEEEEEecCCCCCchHHHH------HHHHHHHHHHhc
Q 024325          166 KEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPIDVAR------RAMQIEESLKAN  235 (269)
Q Consensus       166 ~~~~~~~~~~d~vl~vid~~~~~~~~~--~~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~------~~~~~~~~~~~~  235 (269)
                      ..   ....+|++++|+|.........  ..++..+...  +.|+++|+||+|+........      ......+.....
T Consensus        75 ~~---~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~  151 (212)
T 2j0v_A           75 PL---SYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQI  151 (212)
T ss_dssp             CG---GGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHH
T ss_pred             Hh---hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHc
Confidence            12   2334899999999875322222  1344555544  789999999999976533200      011111111111


Q ss_pred             CCCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          236 NSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       236 ~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      .  ..+++++||++|+|+++++++|.+.+.
T Consensus       152 ~--~~~~~~~Sa~~g~gi~~l~~~l~~~~~  179 (212)
T 2j0v_A          152 G--AAAYIECSSKTQQNVKAVFDTAIKVVL  179 (212)
T ss_dssp             T--CSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             C--CceEEEccCCCCCCHHHHHHHHHHHHh
Confidence            1  248999999999999999999988764

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.83  E-value=1e-20  Score=163.78  Aligned_cols=168  Identities=20%  Similarity=0.210  Sum_probs=101.6

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcCcCc-----cccCCCC---CceeEe------------------------------
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGV-----VRTSDKP---GLTQTI------------------------------  131 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~-----~~~s~~~---gtt~~~------------------------------  131 (269)
                      ...|.|+++|.+|+|||||+|+|++. ..     ..++..|   .++++.                              
T Consensus        22 ~~~~~I~vvG~~~~GKSTlln~l~g~-~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (315)
T 1jwy_B           22 LDLPQIVVVGSQSSGKSSVLENIVGR-DFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIRE  100 (315)
T ss_dssp             TCCCEEEEEECSSSSHHHHHHHHHTS-CCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHH
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHCC-CcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHH
Confidence            45789999999999999999999998 43     3344455   233320                              


Q ss_pred             -----------------------e-EEEeCCcEEEEcCCCCCCcch---hHHHHHHHHHHHHHHHhcccccceEEEEEeC
Q 024325          132 -----------------------N-FFKLGTKLCLVDLPGYGFAYA---KEEVKDAWEELVKEYVSTRVSLKRVCLLIDT  184 (269)
Q Consensus       132 -----------------------~-~~~~~~~~~lvDtpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~  184 (269)
                                             . +...+..+.+|||||+.....   .......+......++.   .+|++++|+|+
T Consensus       101 ~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~iilvvd~  177 (315)
T 1jwy_B          101 EIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIK---KQNAIIVAVTP  177 (315)
T ss_dssp             HHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHH---STTEEEEEEEE
T ss_pred             HHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHc---CCCeEEEEEEe
Confidence                                   0 111245799999999864211   01112223333344443   48999999997


Q ss_pred             -CCCCCcch-HHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEe---eCCC---CCCHHHH
Q 024325          185 -KWGVKPRD-HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV---SSKS---GAGIRSL  256 (269)
Q Consensus       185 -~~~~~~~~-~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v---Sa~~---g~gi~~L  256 (269)
                       ..++...+ ..+++.+...+.|+++|+||+|+......  ....+..   .......+++++   |+.+   +.|++++
T Consensus       178 ~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~~--~~~~~~~---~~~~~~~~~~~v~~~sa~~~~~~~gv~~l  252 (315)
T 1jwy_B          178 ANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTD--AMEVLTG---RVIPLTLGFIGVINRSQEDIIAKKSIRES  252 (315)
T ss_dssp             SSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSSCC--CHHHHTT---SSSCCTTCEEECCCCCHHHHSSSCCHHHH
T ss_pred             cCcchhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcchH--HHHHHhC---CCccCCCCeEEEecCChhhhccCCCHHHH
Confidence             44555444 47777777778999999999999865431  1111111   111111344454   5555   7999999


Q ss_pred             HHHHHHhhhh
Q 024325          257 RTVLSKIARF  266 (269)
Q Consensus       257 ~~~i~~~~~~  266 (269)
                      ++.+.+.+..
T Consensus       253 ~~~~~~~~~~  262 (315)
T 1jwy_B          253 LKSEILYFKN  262 (315)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhC
Confidence            9998877653

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.83  E-value=2.4e-20  Score=151.19  Aligned_cols=155  Identities=17%  Similarity=0.153  Sum_probs=68.6

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCcee-Eee--EEEe-----CCcEEEEcCCCCCCcchhHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ-TIN--FFKL-----GTKLCLVDLPGYGFAYAKEEVKDAWEE  163 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~-~~~--~~~~-----~~~~~lvDtpG~~~~~~~~~~~~~~~~  163 (269)
                      .++|+++|.+|+|||||+|+|++. .....+.+.+|+. +..  ....     ...+.+|||||..          .+..
T Consensus        20 ~~~i~v~G~~~~GKssli~~l~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~   88 (208)
T 2yc2_C           20 RCKVAVVGEATVGKSALISMFTSK-GSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD----------LYKE   88 (208)
T ss_dssp             EEEEEEC-----------------------------------CEEEECTTSSEEEEEEEEETTTTH----------HHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC-CCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcH----------HHHH
Confidence            368999999999999999999987 2233444444443 322  2222     2368999999972          1122


Q ss_pred             HHHHHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh------hCCcEEEEEecCCCCC-chHHHHHHHHHHHHHHhc
Q 024325          164 LVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER------SQTKYQVVLTKTDTVF-PIDVARRAMQIEESLKAN  235 (269)
Q Consensus       164 ~~~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~------~~~p~iiv~NK~Dl~~-~~~~~~~~~~~~~~~~~~  235 (269)
                         ........+|++++|+|+..+..... ..++..+..      .++|+++|+||+|+.. .....  .....+.....
T Consensus        89 ---~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~--~~~~~~~~~~~  163 (208)
T 2yc2_C           89 ---QISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVR--LDMAQDWATTN  163 (208)
T ss_dssp             ---HHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCC--HHHHHHHHHHT
T ss_pred             ---HHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCC--HHHHHHHHHHc
Confidence               22334456999999999875322111 234444443      3789999999999976 22211  11122222222


Q ss_pred             CCCCCCeEEeeCCC-CCCHHHHHHHHHHhhh
Q 024325          236 NSLVQPVMMVSSKS-GAGIRSLRTVLSKIAR  265 (269)
Q Consensus       236 ~~~~~~vi~vSa~~-g~gi~~L~~~i~~~~~  265 (269)
                         ..+++++||++ |.|+++++++|.+.+.
T Consensus       164 ---~~~~~~~Sa~~~~~gi~~l~~~i~~~~~  191 (208)
T 2yc2_C          164 ---TLDFFDVSANPPGKDADAPFLSIATTFY  191 (208)
T ss_dssp             ---TCEEEECCC-------CHHHHHHHHHHH
T ss_pred             ---CCEEEEeccCCCCcCHHHHHHHHHHHHH
Confidence               46899999999 9999999999988653

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.83  E-value=2.3e-20  Score=153.00  Aligned_cols=156  Identities=15%  Similarity=0.032  Sum_probs=98.3

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE---EE--eCCcEEEEcCCCCCCcchhHHHHHHHHHHH
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~---~~--~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~  165 (269)
                      ..++|+++|.+|+|||||+|+|++..   +...+.+|+.+...   ..  ....+.+|||||....          ..+.
T Consensus        26 ~~~ki~vvG~~~vGKSsL~~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~   92 (214)
T 3q3j_B           26 ARCKLVLVGDVQCGKTAMLQVLAKDC---YPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY----------DNVR   92 (214)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHSC---CCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGG----------TTTG
T ss_pred             ceEEEEEECcCCCCHHHHHHHHhcCC---CCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhH----------HHHH
Confidence            35799999999999999999999873   23333333332211   11  1346889999996321          1111


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcch--HHHHHHHHhh--CCcEEEEEecCCCCCchHHHH----------HHHHHHHH
Q 024325          166 KEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPIDVAR----------RAMQIEES  231 (269)
Q Consensus       166 ~~~~~~~~~~d~vl~vid~~~~~~~~~--~~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~----------~~~~~~~~  231 (269)
                      ..   ....+|++++|+|.........  ..++..+...  +.|+++|+||+|+........          ........
T Consensus        93 ~~---~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~  169 (214)
T 3q3j_B           93 PL---CYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAI  169 (214)
T ss_dssp             GG---GCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred             HH---HcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHH
Confidence            22   2334999999999985432222  2445555544  789999999999975311000          00111111


Q ss_pred             HHhcCCCCC-CeEEeeCCCCCC-HHHHHHHHHHhhh
Q 024325          232 LKANNSLVQ-PVMMVSSKSGAG-IRSLRTVLSKIAR  265 (269)
Q Consensus       232 ~~~~~~~~~-~vi~vSa~~g~g-i~~L~~~i~~~~~  265 (269)
                      ....   .. +++++||++|.| +++++++|.+.+.
T Consensus       170 ~~~~---~~~~~~e~SA~~g~g~v~~lf~~l~~~~~  202 (214)
T 3q3j_B          170 AKQL---GAEIYLEGSAFTSEKSIHSIFRTASMLCL  202 (214)
T ss_dssp             HHHH---TCSEEEECCTTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHc---CCCEEEEeccCCCcccHHHHHHHHHHHHh
Confidence            1111   34 899999999998 9999999988764

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.83  E-value=2e-20  Score=174.27  Aligned_cols=158  Identities=21%  Similarity=0.333  Sum_probs=107.2

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCC-CceeEee--EEEe-------------------CCcEEEEcCCCCC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-GLTQTIN--FFKL-------------------GTKLCLVDLPGYG  149 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~-gtt~~~~--~~~~-------------------~~~~~lvDtpG~~  149 (269)
                      .|+|+++|++|+|||||+++|++. .  .....+ ++|.+..  +...                   ...+.||||||+.
T Consensus         5 ~~~V~IvGh~d~GKTTLl~~L~~~-~--v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe   81 (594)
T 1g7s_A            5 SPIVSVLGHVDHGKTTLLDHIRGS-A--VASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE   81 (594)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH-H--HSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred             CcEEEEECCCCCcHHHHHHHHhcc-c--CccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcH
Confidence            579999999999999999999986 2  222222 4444421  1110                   1148999999984


Q ss_pred             CcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCch----------
Q 024325          150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPI----------  219 (269)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~----------  219 (269)
                      ....             ........+|++++|+|+.+++..+..+.+..+...++|+++|+||+|+....          
T Consensus        82 ~F~~-------------~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~e  148 (594)
T 1g7s_A           82 AFTT-------------LRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFME  148 (594)
T ss_dssp             CCTT-------------SBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHH
T ss_pred             HHHH-------------HHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCchHH
Confidence            3210             11123445999999999999888888888888888899999999999997421          


Q ss_pred             -------H----HHHHHHHHHHHHHhcC------------CCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          220 -------D----VARRAMQIEESLKANN------------SLVQPVMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       220 -------~----~~~~~~~~~~~~~~~~------------~~~~~vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                             .    +......+.+.+....            ....|++++||++|.|+++|+++|...+.
T Consensus       149 ~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~  217 (594)
T 1g7s_A          149 TFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ  217 (594)
T ss_dssp             HHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence                   1    1111112222222210            12348999999999999999999987664

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.83  E-value=1e-19  Score=157.25  Aligned_cols=162  Identities=15%  Similarity=0.083  Sum_probs=105.9

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe----CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~----~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      .++|+++|.+|+|||||+|++++. ....+++.+++|.+..+...    +..+.+|||||....     .......+...
T Consensus         3 ~~KI~lvG~~~vGKSSLi~~l~~~-~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~-----~~~~~~~~~~~   76 (307)
T 3r7w_A            3 GSKLLLMGRSGSGKSSMRSIIFSN-YSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF-----MENYFTKQKDH   76 (307)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHSC-CCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH-----HHHHHTTTHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC-CCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHH-----hhhhhhhHHHH
Confidence            368999999999999999999987 34567778888887765432    457899999996210     00000122233


Q ss_pred             HHhcccccceEEEEEeCCCCCCcchH-HHHHHHHh-----hCCcEEEEEecCCCCCchHHH----HHHHHHHHHHHhcCC
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMER-----SQTKYQVVLTKTDTVFPIDVA----RRAMQIEESLKANNS  237 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~~-~~~~~l~~-----~~~p~iiv~NK~Dl~~~~~~~----~~~~~~~~~~~~~~~  237 (269)
                      ++.   .+|++++|+|+.......+. .+..++..     .++|+++|+||+|+..+....    .....+.+.......
T Consensus        77 ~~~---~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~  153 (307)
T 3r7w_A           77 IFQ---MVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGF  153 (307)
T ss_dssp             HHT---TCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             Hhc---cCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCC
Confidence            333   49999999999865333332 23333332     278999999999998743332    112333333332211


Q ss_pred             CCCCeEEeeCCCCCCHHHHHHHHHHh
Q 024325          238 LVQPVMMVSSKSGAGIRSLRTVLSKI  263 (269)
Q Consensus       238 ~~~~vi~vSa~~g~gi~~L~~~i~~~  263 (269)
                      ...+++++||++ .|+.+++..+...
T Consensus       154 ~~~~~~~tSa~~-~~i~e~~~~iv~~  178 (307)
T 3r7w_A          154 PNLIGFPTSIWD-ESLYKAWSQIVCS  178 (307)
T ss_dssp             CSCEEEECCTTS-SHHHHHHHHHHHT
T ss_pred             CCeEEEEeeecC-ChHHHHHHHHHHH
Confidence            137899999999 8888888777654

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.82  E-value=8.4e-20  Score=149.48  Aligned_cols=152  Identities=16%  Similarity=0.140  Sum_probs=95.3

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEEe------------CCcEEEEcCCCCCCcchhHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKL------------GTKLCLVDLPGYGFAYAKEE  156 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~~------------~~~~~lvDtpG~~~~~~~~~  156 (269)
                      .++|+++|.+|+|||||+|+|++.. . .....+.++.+..   +...            ...+.+|||||..       
T Consensus        25 ~~ki~vvG~~~~GKSsLi~~l~~~~-~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~-------   95 (217)
T 2f7s_A           25 LIKLLALGDSGVGKTTFLYRYTDNK-F-NPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE-------   95 (217)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHCSC-C-CCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH-------
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcCC-C-CcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcH-------
Confidence            4689999999999999999999863 1 1111111222221   1111            3468999999941       


Q ss_pred             HHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHh-------hCCcEEEEEecCCCCCchHHHHHHHHHH
Q 024325          157 VKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER-------SQTKYQVVLTKTDTVFPIDVARRAMQIE  229 (269)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~-------~~~p~iiv~NK~Dl~~~~~~~~~~~~~~  229 (269)
                         .+..+...++.   .+|++++|+|+......  ..+..++..       .+.|+++|+||+|+........  ....
T Consensus        96 ---~~~~~~~~~~~---~~d~iilV~D~~~~~s~--~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~--~~~~  165 (217)
T 2f7s_A           96 ---RFRSLTTAFFR---DAMGFLLMFDLTSQQSF--LNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNE--RQAR  165 (217)
T ss_dssp             ---HHHHHHHHHHT---TCCEEEEEEETTCHHHH--HHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCH--HHHH
T ss_pred             ---hHHhHHHHHhc---CCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCH--HHHH
Confidence               22333334433   49999999998753211  222233332       3679999999999975322110  1111


Q ss_pred             HHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          230 ESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       230 ~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      +....   ...+++++||++|.|+++++++|.+.+.
T Consensus       166 ~~~~~---~~~~~~~~Sa~~g~gi~~l~~~l~~~i~  198 (217)
T 2f7s_A          166 ELADK---YGIPYFETSAATGQNVEKAVETLLDLIM  198 (217)
T ss_dssp             HHHHH---TTCCEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred             HHHHH---CCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            22222   2468999999999999999999987653

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.82  E-value=3.8e-21  Score=169.38  Aligned_cols=168  Identities=19%  Similarity=0.220  Sum_probs=110.0

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcCcCcc-----ccCCCCC----------------------ceeE------------
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVV-----RTSDKPG----------------------LTQT------------  130 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~-----~~s~~~g----------------------tt~~------------  130 (269)
                      ...|+|+++|.+|+|||||+|+|++. ...     .++..|+                      +|.+            
T Consensus        29 ~~~~~I~vvG~~~~GKSSLln~L~g~-~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~  107 (353)
T 2x2e_A           29 LDLPQIAVVGGQSAGKSSVLENFVGR-DFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDR  107 (353)
T ss_dssp             CCCCEEEEECBTTSSHHHHHHTTTTS-CCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHhCC-CcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHH
Confidence            35689999999999999999999997 333     3445555                      2322            


Q ss_pred             --------------eeEEE-eCCcEEEEcCCCCCCcch---hHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcch
Q 024325          131 --------------INFFK-LGTKLCLVDLPGYGFAYA---KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD  192 (269)
Q Consensus       131 --------------~~~~~-~~~~~~lvDtpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~  192 (269)
                                    +.... .+..+.||||||+.....   ...+.+.+..+...|+..  ..+++++|+|+..++...+
T Consensus       108 i~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiL~v~~a~~~~~~~~  185 (353)
T 2x2e_A          108 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTK--ENCLILAVSPANSDLANSD  185 (353)
T ss_dssp             HHTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTS--TTEEEEEEEETTSCGGGCH
T ss_pred             hcccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcC--CCeEEEEEecCCCccchhH
Confidence                          00011 146799999999875321   223334556677777653  3567778888876666555


Q ss_pred             H-HHHHHHHhhCCcEEEEEecCCCCCchH-HHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHh
Q 024325          193 H-ELISLMERSQTKYQVVLTKTDTVFPID-VARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI  263 (269)
Q Consensus       193 ~-~~~~~l~~~~~p~iiv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~  263 (269)
                      . .+++.+...+.|+++|+||+|+.+... ...   .+............+++++||++|.|+++|++++.+.
T Consensus       186 ~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~---~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~e  255 (353)
T 2x2e_A          186 ALKVAKEVDPQGQRTIGVITKLDLMDEGTDARD---VLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  255 (353)
T ss_dssp             HHHHHHHHCTTCTTEEEEEECGGGSCTTCCCHH---HHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHhCcCCCceEEEeccccccCcchhHHH---HHhCCcccccCCceEEEeCCcccccccccHHHHHHHH
Confidence            4 366666667899999999999986532 111   1110000000112367899999999999999998763

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.82  E-value=4.8e-20  Score=166.65  Aligned_cols=152  Identities=15%  Similarity=0.185  Sum_probs=99.9

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCc---------cccCCCCCc----------------------eeEeeEE---Ee
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGV---------VRTSDKPGL----------------------TQTINFF---KL  136 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~---------~~~s~~~gt----------------------t~~~~~~---~~  136 (269)
                      ..++|+++|.+|+|||||+|+|++....         ...+..+++                      |.+..+.   ..
T Consensus        23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~  102 (434)
T 1zun_B           23 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTA  102 (434)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECS
T ss_pred             CceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecC
Confidence            3468999999999999999999865210         111222333                      3333222   23


Q ss_pred             CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCC-cEEEEEecCCC
Q 024325          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT-KYQVVLTKTDT  215 (269)
Q Consensus       137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~-p~iiv~NK~Dl  215 (269)
                      +..+.+|||||+...             ..........+|++++|+|+..+...+..+.+..+...+. |+++|+||+|+
T Consensus       103 ~~~~~iiDtpGh~~f-------------~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl  169 (434)
T 1zun_B          103 KRKFIIADTPGHEQY-------------TRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDL  169 (434)
T ss_dssp             SEEEEEEECCCSGGG-------------HHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTT
T ss_pred             CceEEEEECCChHHH-------------HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcC
Confidence            557999999997321             1112223345999999999998887777777777777776 59999999999


Q ss_pred             CCc--hHHHHHHHHHHHHHHhcC--CCCCCeEEeeCCCCCCHHH
Q 024325          216 VFP--IDVARRAMQIEESLKANN--SLVQPVMMVSSKSGAGIRS  255 (269)
Q Consensus       216 ~~~--~~~~~~~~~~~~~~~~~~--~~~~~vi~vSa~~g~gi~~  255 (269)
                      .+.  .........+.+.+....  ....+++++||++|.|+++
T Consensus       170 ~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~  213 (434)
T 1zun_B          170 NGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN  213 (434)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred             CcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccc
Confidence            863  223334444555444432  2236799999999999987

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.82  E-value=4.7e-20  Score=168.78  Aligned_cols=152  Identities=16%  Similarity=0.134  Sum_probs=100.3

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcC-----------------------------ccccCCCCCceeEeeEE---EeCC
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWG-----------------------------VVRTSDKPGLTQTINFF---KLGT  138 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~-----------------------------~~~~s~~~gtt~~~~~~---~~~~  138 (269)
                      ...+|+++|.+|+|||||+|+|++...                             .......+|+|.+..+.   ..+.
T Consensus        32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~  111 (483)
T 3p26_A           32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA  111 (483)
T ss_dssp             CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence            346899999999999999999976410                             01122345677665433   3467


Q ss_pred             cEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCC-------CCcchHHHHHHHHhhCC-cEEEEE
Q 024325          139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------VKPRDHELISLMERSQT-KYQVVL  210 (269)
Q Consensus       139 ~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~-------~~~~~~~~~~~l~~~~~-p~iiv~  210 (269)
                      .+.+|||||+..             +..........+|++++|+|+..+       ...+..+.+..+...+. |+++|+
T Consensus       112 ~~~iiDTPG~~~-------------f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvvi  178 (483)
T 3p26_A          112 NFTIVDAPGHRD-------------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAM  178 (483)
T ss_dssp             EEEEECCCCCGG-------------GHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             eEEEEECCCcHH-------------HHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEE
Confidence            899999999832             222333334459999999999875       34455666666666664 599999


Q ss_pred             ecCCCCCc--hHHHHHHHHHHHHHHhcCC--CCCCeEEeeCCCCCCHHH
Q 024325          211 TKTDTVFP--IDVARRAMQIEESLKANNS--LVQPVMMVSSKSGAGIRS  255 (269)
Q Consensus       211 NK~Dl~~~--~~~~~~~~~~~~~~~~~~~--~~~~vi~vSa~~g~gi~~  255 (269)
                      ||+|+.+.  .........+...+.....  ...+++++||++|+|+++
T Consensus       179 NK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          179 NKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             ECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             ECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence            99999863  2333344444444433221  146799999999999985

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.82  E-value=3.6e-21  Score=158.28  Aligned_cols=155  Identities=13%  Similarity=0.031  Sum_probs=103.6

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      ..++|+++|.+|+|||||+|+++.........+.+|++........   +..+.+|||||....          ..+...
T Consensus        14 ~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~   83 (221)
T 3gj0_A           14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKF----------GGLRDG   83 (221)
T ss_dssp             CEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGT----------SCCCHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHH----------hHHHHH
Confidence            3479999999999999999995543233455677777777654443   356899999996321          111122


Q ss_pred             HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHhh--CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEE
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM  244 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~  244 (269)
                      ++.   .+|++++|+|+........ ..++..+...  ++|+++|+||+|+........... +..   .   ...++++
T Consensus        84 ~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~-~~~---~---~~~~~~~  153 (221)
T 3gj0_A           84 YYI---QAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIV-FHR---K---KNLQYYD  153 (221)
T ss_dssp             HHT---TCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCC-HHH---H---HTCEEEE
T ss_pred             HHh---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHH-HHH---H---cCCEEEE
Confidence            333   3999999999975322221 2334444332  789999999999976432111111 111   1   1468999


Q ss_pred             eeCCCCCCHHHHHHHHHHhhh
Q 024325          245 VSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       245 vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      +||++|.|+++++++|.+.+.
T Consensus       154 ~Sa~~~~gi~~l~~~l~~~l~  174 (221)
T 3gj0_A          154 ISAKSNYNFEKPFLWLARKLI  174 (221)
T ss_dssp             CBGGGTBTTTHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999988764

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.82  E-value=1e-19  Score=162.64  Aligned_cols=160  Identities=19%  Similarity=0.263  Sum_probs=113.9

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCc---Ccc-c----------cCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcchhH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQW---GVV-R----------TSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKE  155 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~---~~~-~----------~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~~~  155 (269)
                      .+|+++|++|+|||||+++|++..   ... .          .....|+|.+..+..   .+..+.+|||||+       
T Consensus         4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~-------   76 (397)
T 1d2e_A            4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGH-------   76 (397)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSH-------
T ss_pred             EEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCCh-------
Confidence            589999999999999999998741   000 0          011356666654332   3578999999996       


Q ss_pred             HHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCc-EEEEEecCCCCCchH-HHHHHHHHHHHHH
Q 024325          156 EVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPID-VARRAMQIEESLK  233 (269)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p-~iiv~NK~Dl~~~~~-~~~~~~~~~~~~~  233 (269)
                            ..+..........+|++++|+|+..+...+..+.+..+...++| +++|+||+|+.+..+ .......+.+.+.
T Consensus        77 ------~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~  150 (397)
T 1d2e_A           77 ------ADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLT  150 (397)
T ss_dssp             ------HHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHH
Confidence                  22334445566679999999999988877777777778778899 689999999985322 2333344555554


Q ss_pred             hcCC--CCCCeEEeeCCCCCC----------HHHHHHHHHHhhh
Q 024325          234 ANNS--LVQPVMMVSSKSGAG----------IRSLRTVLSKIAR  265 (269)
Q Consensus       234 ~~~~--~~~~vi~vSa~~g~g----------i~~L~~~i~~~~~  265 (269)
                      ....  ...|++++||++|.|          +++|++.|.+.+.
T Consensus       151 ~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p  194 (397)
T 1d2e_A          151 EFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (397)
T ss_dssp             HTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             HcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence            4321  246899999999774          8999999987653

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.82  E-value=4.6e-20  Score=165.37  Aligned_cols=162  Identities=19%  Similarity=0.177  Sum_probs=112.1

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCc--Cc---cc----cC------CCCCceeEeeE---EEeCCcEEEEcCCCCCCcc
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQW--GV---VR----TS------DKPGLTQTINF---FKLGTKLCLVDLPGYGFAY  152 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~--~~---~~----~s------~~~gtt~~~~~---~~~~~~~~lvDtpG~~~~~  152 (269)
                      ..++|+++|++|+|||||+|+|++..  ..   ..    ..      ..+|+|.+...   ...+..+.+|||||+.+  
T Consensus        10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~--   87 (405)
T 2c78_A           10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD--   87 (405)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG--
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH--
Confidence            34789999999999999999998730  00   00    00      12455555432   22357899999999743  


Q ss_pred             hhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCc-EEEEEecCCCCCchH-HHHHHHHHHH
Q 024325          153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPID-VARRAMQIEE  230 (269)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p-~iiv~NK~Dl~~~~~-~~~~~~~~~~  230 (269)
                                 +..........+|++++|+|+..+...+..+++..+...++| +++|+||+|+....+ .......+.+
T Consensus        88 -----------f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~  156 (405)
T 2c78_A           88 -----------YIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRD  156 (405)
T ss_dssp             -----------GHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHH
T ss_pred             -----------HHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHHH
Confidence                       112223334459999999999988877778888888888899 889999999985322 2333344555


Q ss_pred             HHHhcCC--CCCCeEEeeCCCCCC------------------HHHHHHHHHHhhh
Q 024325          231 SLKANNS--LVQPVMMVSSKSGAG------------------IRSLRTVLSKIAR  265 (269)
Q Consensus       231 ~~~~~~~--~~~~vi~vSa~~g~g------------------i~~L~~~i~~~~~  265 (269)
                      .+.....  ...|++++||++|.|                  +++|++.|.+.+.
T Consensus       157 ~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp  211 (405)
T 2c78_A          157 LLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP  211 (405)
T ss_dssp             HHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence            4444321  247899999999987                  8889988877553

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.82  E-value=5.2e-20  Score=151.63  Aligned_cols=155  Identities=14%  Similarity=0.090  Sum_probs=93.5

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCcccc-CCCCCceeEeeEEEeC---CcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRT-SDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~-s~~~gtt~~~~~~~~~---~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      .++|+++|.+|+|||||+|+|++.. .... .+..+++........+   ..+.+|||||.....          .+.. 
T Consensus        13 ~~ki~v~G~~~vGKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~-   80 (223)
T 3cpj_B           13 LFKIVLIGDSGVGKSNLLSRFTKNE-FNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYR----------AITS-   80 (223)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHHCC-CCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTT----------CCCG-
T ss_pred             eeEEEEECcCCCCHHHHHHHHhcCC-CCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchh----------hhHH-
Confidence            4689999999999999999999873 2211 1222222222222222   478999999974321          1111 


Q ss_pred             HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHhh---CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeE
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM  243 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~~---~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi  243 (269)
                        .....+|++++|+|......... ..++..+...   ++|+++|+||+|+........  .........   ...+++
T Consensus        81 --~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~--~~~~~~~~~---~~~~~~  153 (223)
T 3cpj_B           81 --AYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPT--EESKTFAQE---NQLLFT  153 (223)
T ss_dssp             --GGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCH--HHHHHHHHH---TTCEEE
T ss_pred             --HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCH--HHHHHHHHH---cCCEEE
Confidence              12334899999999875322221 2334444432   689999999999975322110  111111221   246899


Q ss_pred             EeeCCCCCCHHHHHHHHHHhhh
Q 024325          244 MVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       244 ~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      ++||++|.|+++++++|.+.+.
T Consensus       154 ~~Sa~~~~gi~~l~~~l~~~i~  175 (223)
T 3cpj_B          154 ETSALNSENVDKAFEELINTIY  175 (223)
T ss_dssp             ECCCC-CCCHHHHHHHHHHHHT
T ss_pred             EEeCCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999987764

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.82  E-value=9.3e-20  Score=149.21  Aligned_cols=155  Identities=16%  Similarity=0.076  Sum_probs=94.9

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEEeC--CcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      .++|+++|.+|+|||||+|++++. ...+++.+++++.+..   ....+  ..+.+|||+|....         ...+..
T Consensus        37 ~~kVvlvG~~~vGKSSLl~r~~~~-~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~---------~~~l~~  106 (211)
T 2g3y_A           37 YYRVVLIGEQGVGKSTLANIFAGV-HDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGE---------NEWLHD  106 (211)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCC-CCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHH---------HHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC-CCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcch---------hhhHHH
Confidence            478999999999999999999976 3344555444443321   11122  34678999996320         111222


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHHH-HHHHHHHHHHhcCCCCC
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVAR-RAMQIEESLKANNSLVQ  240 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~  240 (269)
                      .   ....++++++|+|......... ..+...+..    .++|+++|+||+|+........ ....+...      ...
T Consensus       107 ~---~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~------~~~  177 (211)
T 2g3y_A          107 H---CMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVV------FDC  177 (211)
T ss_dssp             C---CCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHH------HTC
T ss_pred             H---HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHH------cCC
Confidence            2   2334889999999864211111 123333432    3689999999999964322111 11111111      136


Q ss_pred             CeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          241 PVMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       241 ~vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      +++++||++|+|+++++++|.+.+.
T Consensus       178 ~~~e~SAk~g~~v~elf~~l~~~i~  202 (211)
T 2g3y_A          178 KFIETSAAVQHNVKELFEGIVRQVR  202 (211)
T ss_dssp             EEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            8999999999999999999988764

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.81  E-value=5.6e-22  Score=182.21  Aligned_cols=158  Identities=19%  Similarity=0.218  Sum_probs=114.4

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE----eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~----~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      .|+|+++|++|+|||||+|+|++..  ......+|+|.++....    .+..+.||||||+...             ...
T Consensus         4 ~pkV~IvG~~~vGKTSLl~~L~~~~--~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f-------------~~~   68 (537)
T 3izy_P            4 SPVVTIMGHVDHGKTTLLDKLRKTQ--VAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAF-------------SAM   68 (537)
T ss_dssp             CCBCEEEESTTTTHHHHHHHHHHHH--HHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCT-------------TTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC--cccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHH-------------HHH
Confidence            5789999999999999999999873  33446788888875432    3557999999997431             111


Q ss_pred             HHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHH--hcCCCCCCeEEe
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLK--ANNSLVQPVMMV  245 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~~vi~v  245 (269)
                      .......+|++++|+|+..+..++..+.+..+...++|+++|+||+|+...... .....+.....  .......+++++
T Consensus        69 ~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~-~v~~~l~~~~~~~e~~~~~~~iv~v  147 (537)
T 3izy_P           69 RARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPE-KVKKELLAYDVVCEDYGGDVQAVHV  147 (537)
T ss_dssp             BBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCC-SSSSHHHHTTSCCCCSSSSEEECCC
T ss_pred             HHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchH-HHHHHHHhhhhhHHhcCCCceEEEE
Confidence            123345599999999999988888888888888889999999999999753210 00111111000  001123579999


Q ss_pred             eCCCCCCHHHHHHHHHHhhh
Q 024325          246 SSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       246 Sa~~g~gi~~L~~~i~~~~~  265 (269)
                      ||++|.|+++|+++|...+.
T Consensus       148 SAktG~GI~eLle~I~~l~~  167 (537)
T 3izy_P          148 SALTGENMMALAEATIALAE  167 (537)
T ss_dssp             CSSSSCSSHHHHHHHHHHHT
T ss_pred             ECCCCCCchhHHHHHHHhhh
Confidence            99999999999999988764

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.81  E-value=6.6e-20  Score=171.71  Aligned_cols=153  Identities=16%  Similarity=0.136  Sum_probs=106.9

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCC------------------------------CCCceeEeeE---EEe
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD------------------------------KPGLTQTINF---FKL  136 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~------------------------------~~gtt~~~~~---~~~  136 (269)
                      ...++|+++|++|+|||||+|+|++.. ......                              .+|+|.+..+   ...
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~-~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~  243 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDL-NIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH  243 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCS-SCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhc-CCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence            446799999999999999999999762 111111                              2577776532   334


Q ss_pred             CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCC-------CCcchHHHHHHHHhhCCc-EEE
Q 024325          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------VKPRDHELISLMERSQTK-YQV  208 (269)
Q Consensus       137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~-------~~~~~~~~~~~l~~~~~p-~ii  208 (269)
                      +..+.||||||+..             +..........+|++++|+|+..+       ...+..+.+..+...++| +++
T Consensus       244 ~~~~~iiDTPG~e~-------------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIV  310 (611)
T 3izq_1          244 RANFTIVDAPGHRD-------------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLII  310 (611)
T ss_dssp             SCEEEEEECCSSSC-------------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEE
T ss_pred             CceEEEEECCCCcc-------------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEE
Confidence            67899999999832             344555666779999999999764       345556666667766755 999


Q ss_pred             EEecCCCCCc--hHHHHHHHHHHHHHHhcCC--CCCCeEEeeCCCCCCHHHH
Q 024325          209 VLTKTDTVFP--IDVARRAMQIEESLKANNS--LVQPVMMVSSKSGAGIRSL  256 (269)
Q Consensus       209 v~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~--~~~~vi~vSa~~g~gi~~L  256 (269)
                      |+||+|+.+.  .........+...+.....  ...+++++||++|.|++++
T Consensus       311 VvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          311 AMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             EEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             EEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            9999999863  2233334444444433221  1468999999999999865

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.81  E-value=2.1e-19  Score=147.53  Aligned_cols=151  Identities=17%  Similarity=0.140  Sum_probs=93.7

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCc-eeEee--EEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL-TQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gt-t~~~~--~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      ++|+++|.+|+|||||+++++...   +...+..| ..+..  ....   ...+.+|||+|....          ..+..
T Consensus        14 ~KivlvGd~~VGKTsLi~r~~~~~---f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~----------~~l~~   80 (216)
T 4dkx_A           14 FKLVFLGEQSVGKTSLITRFMYDS---FDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERF----------RSLIP   80 (216)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC---CC----------CEEEEEECSSCEEEEEEECCSCTTTC----------GGGHH
T ss_pred             EEEEEECcCCcCHHHHHHHHHhCC---CCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhh----------hhHHH
Confidence            589999999999999999999762   22332222 22221  1111   245789999997432          23344


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHH-HHHHHHHHHHHhcCCCCCC
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLVQP  241 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~  241 (269)
                      .|++.   ++++++|+|......... ..++..+..   .++|+++|.||+|+.....+. ...+.+.+   ..   +.+
T Consensus        81 ~~~~~---a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~---~~---~~~  151 (216)
T 4dkx_A           81 SYIRD---SAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAK---EL---NVM  151 (216)
T ss_dssp             HHHTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHH---HH---TCE
T ss_pred             HHhcc---ccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHH---Hh---CCe
Confidence            55544   899999999874322211 233333332   368999999999987532211 11111221   11   467


Q ss_pred             eEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          242 VMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       242 vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      ++++||++|.||+++|+.|.+.+.
T Consensus       152 ~~e~SAktg~nV~e~F~~i~~~i~  175 (216)
T 4dkx_A          152 FIETSAKAGYNVKQLFRRVAAALP  175 (216)
T ss_dssp             EEEEBTTTTBSHHHHHHHHHHHC-
T ss_pred             eEEEeCCCCcCHHHHHHHHHHHHH
Confidence            999999999999999999987663

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.69  E-value=1.8e-21  Score=158.00  Aligned_cols=155  Identities=13%  Similarity=0.001  Sum_probs=97.7

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE---E--EeCCcEEEEcCCCCCCcchhHHHHHHHHHHH
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---F--KLGTKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~---~--~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~  165 (269)
                      ..++|+++|.+|+|||||+|+|++..   ....+.+|+.+...   .  .....+.+|||||....          ..+.
T Consensus        29 ~~~ki~v~G~~~~GKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~   95 (204)
T 3th5_A           29 QAIKCVVVGDGAVGKTCLLISYTTNA---FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY----------DRLR   95 (204)
Confidence            34689999999999999999999762   23334444433221   1  12345679999996321          2222


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcch--HHHHHHHHhh--CCcEEEEEecCCCCCchHHHHHH----------HHHHHH
Q 024325          166 KEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPIDVARRA----------MQIEES  231 (269)
Q Consensus       166 ~~~~~~~~~~d~vl~vid~~~~~~~~~--~~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~~~----------~~~~~~  231 (269)
                      ..++   ..+|++++|+|+.......+  ..++..+...  ++|+++|+||+|+.+........          ......
T Consensus        96 ~~~~---~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~  172 (204)
T 3th5_A           96 PLSY---PQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM  172 (204)
Confidence            2222   33899999999875433332  2444555444  78999999999997643211110          011111


Q ss_pred             HHhcCCCCC-CeEEeeCCCCCCHHHHHHHHHHhh
Q 024325          232 LKANNSLVQ-PVMMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       232 ~~~~~~~~~-~vi~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      .   ..... +++++||++|.|+++++++|.+.+
T Consensus       173 ~---~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          173 A---KEIGAVKYLECSALTQRGLKTVFDEAIRAV  203 (204)
Confidence            1   11123 789999999999999999987653

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.80  E-value=1.8e-19  Score=144.43  Aligned_cols=151  Identities=12%  Similarity=0.040  Sum_probs=96.1

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee--EEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~--~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      ..+|+++|.+|+|||||+|+|++..   +...+.+|+.+..  ....   ...+.+|||||.....          .+ .
T Consensus        21 ~~ki~vvG~~~vGKTsLi~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------~~-~   86 (187)
T 3c5c_A           21 EVNLAILGRRGAGKSALTVKFLTKR---FISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPR----------NC-E   86 (187)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSS---CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CC----------CT-H
T ss_pred             eEEEEEECCCCCcHHHHHHHHHhCC---CCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcch----------hH-H
Confidence            4689999999999999999999872   3344555554431  1111   3468899999974321          11 1


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh------hCCcEEEEEecCCCCCchHHH-HHHHHHHHHHHhcCCC
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER------SQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSL  238 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~------~~~p~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~  238 (269)
                      .++.   .+|++++|+|......... ..++..+..      .+.|+++|+||+|+....... .....+.   ...   
T Consensus        87 ~~~~---~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~---~~~---  157 (187)
T 3c5c_A           87 RYLN---WAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALA---GRF---  157 (187)
T ss_dssp             HHHT---TCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHH---HHH---
T ss_pred             HHHh---hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHH---HHc---
Confidence            2333   3899999999874221111 223333332      378999999999996432211 1111111   111   


Q ss_pred             CCCeEEeeC-CCCCCHHHHHHHHHHhhh
Q 024325          239 VQPVMMVSS-KSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       239 ~~~vi~vSa-~~g~gi~~L~~~i~~~~~  265 (269)
                      ..+++++|| ++|.|+++++++|.+.+.
T Consensus       158 ~~~~~e~Sa~~~g~gv~~lf~~l~~~i~  185 (187)
T 3c5c_A          158 GCLFFEVSACLDFEHVQHVFHEAVREAR  185 (187)
T ss_dssp             TCEEEECCSSSCSHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEeecCccccHHHHHHHHHHHHh
Confidence            368999999 899999999999988764

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.80  E-value=4.2e-19  Score=141.82  Aligned_cols=159  Identities=13%  Similarity=0.097  Sum_probs=94.4

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCc-eeEeeEEE--------eCCcEEEEcCCCCCCcchhHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL-TQTINFFK--------LGTKLCLVDLPGYGFAYAKEEVKDAWEE  163 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gt-t~~~~~~~--------~~~~~~lvDtpG~~~~~~~~~~~~~~~~  163 (269)
                      .+|+++|.+|+|||||+|+|++.. ....+.+.+| ..+.....        ....+.+|||||..          .+..
T Consensus         3 ~kv~ivG~~gvGKStLl~~l~~~~-~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~   71 (184)
T 2zej_A            3 MKLMIVGNTGSGKTTLLQQLMKTK-KSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGRE----------EFYS   71 (184)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTCC------------CSEEEEEEEC---------CEEEEEEECSHH----------HHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCC-CccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCH----------HHHH
Confidence            589999999999999999999852 1223322222 23332111        24578999999952          1122


Q ss_pred             HHHHHHhcccccceEEEEEeCCCCCCcc--hHHHHHHHHh--hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCC
Q 024325          164 LVKEYVSTRVSLKRVCLLIDTKWGVKPR--DHELISLMER--SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLV  239 (269)
Q Consensus       164 ~~~~~~~~~~~~d~vl~vid~~~~~~~~--~~~~~~~l~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  239 (269)
                      +...|+..   ++++++|+|.+.+....  -..++..+..  .+.|+++|.||+|+..............+.+.  ....
T Consensus        72 ~~~~~~~~---~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~  146 (184)
T 2zej_A           72 THPHFMTQ---RALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELL--NKRG  146 (184)
T ss_dssp             TSHHHHHH---SEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTT--TCTT
T ss_pred             hhHHHccC---CcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHH--HhcC
Confidence            22333333   78899999987542111  1233333332  36899999999999865433222112212111  1123


Q ss_pred             CC----eEEeeCCCCC-CHHHHHHHHHHhhhhh
Q 024325          240 QP----VMMVSSKSGA-GIRSLRTVLSKIARFA  267 (269)
Q Consensus       240 ~~----vi~vSa~~g~-gi~~L~~~i~~~~~~~  267 (269)
                      .+    ++++||++|. |+++|++.|.+.+...
T Consensus       147 ~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~  179 (184)
T 2zej_A          147 FPAIRDYHFVNATEESDALAKLRKTIINESLNF  179 (184)
T ss_dssp             SCEEEEEEECCTTSCCHHHHHHHHHHHHHHHCC
T ss_pred             CcchhheEEEecccCchhHHHHHHHHHHHHhcc
Confidence            44    8999999996 9999999998877544

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.80  E-value=1e-19  Score=159.89  Aligned_cols=156  Identities=19%  Similarity=0.239  Sum_probs=93.2

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcCc-----CccccC-------------------------------CCC------Cc
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTS-------------------------------DKP------GL  127 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~~-----~~~~~s-------------------------------~~~------gt  127 (269)
                      ...+.|+++|+||||||||+|+|++..     .+...+                               +.|      |+
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~  151 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGV  151 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccc
Confidence            457899999999999999999998621     111122                               222      23


Q ss_pred             eeEeeE-----EEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhh
Q 024325          128 TQTINF-----FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS  202 (269)
Q Consensus       128 t~~~~~-----~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~  202 (269)
                      |++...     ...+..+.++||||++.+.         ..+       ...+|++++|+|++.+....  .+..  .-.
T Consensus       152 tr~~~~~~~~~~~~~~~~iliDT~Gi~~~~---------~~l-------~~~~d~vl~V~d~~~~~~~~--~i~~--~il  211 (349)
T 2www_A          152 TRTTNEAILLCEGAGYDIILIETVGVGQSE---------FAV-------ADMVDMFVLLLPPAGGDELQ--GIKR--GII  211 (349)
T ss_dssp             CTTHHHHHHHHHHTTCSEEEEECCCC--CH---------HHH-------HTTCSEEEEEECCC----------------C
T ss_pred             hHHHHHHHHhhccCCCCEEEEECCCcchhh---------hhH-------HhhCCEEEEEEcCCcchhHH--HhHH--HHH
Confidence            332210     1135678999999986421         111       12499999999987542211  1111  113


Q ss_pred             CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcC----CCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          203 QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANN----SLVQPVMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       203 ~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~----~~~~~vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      ..|.++|+||+|+.+..........+...+....    ....+++++||++|+|+++|+++|.+.+.
T Consensus       212 ~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~  278 (349)
T 2www_A          212 EMADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD  278 (349)
T ss_dssp             CSCSEEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             hcCCEEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence            5789999999999754333222333333222111    12457899999999999999999988764

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.80  E-value=1.5e-19  Score=171.34  Aligned_cols=167  Identities=20%  Similarity=0.206  Sum_probs=115.8

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCcee----------------------------------------
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ----------------------------------------  129 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~----------------------------------------  129 (269)
                      ...|+|+++|.+|+|||||+|+|+|. ...+.+..+ +|+                                        
T Consensus        49 i~lp~I~vvG~~saGKSSllnaL~g~-~~LP~g~g~-~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~  126 (772)
T 3zvr_A           49 LDLPQIAVVGGQSAGKSSVLENFVGR-DFLPRGSGI-VTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETD  126 (772)
T ss_dssp             GCCSEEEEEECTTTCHHHHHHHHHSS-CCSCCSSSC-SCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCC-CccCcCCcc-ccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHh
Confidence            35789999999999999999999997 332222211 121                                        


Q ss_pred             -----------Eee----EEEeCCcEEEEcCCCCCCcch---hHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcc
Q 024325          130 -----------TIN----FFKLGTKLCLVDLPGYGFAYA---KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPR  191 (269)
Q Consensus       130 -----------~~~----~~~~~~~~~lvDtpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~  191 (269)
                                 +..    +......+.||||||+.....   +..+...+..++..|..  ..+|++++|+|++.++...
T Consensus       127 ~~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~--~~aDlIL~VVDAs~~~~~~  204 (772)
T 3zvr_A          127 RVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT--KENCLILAVSPANSDLANS  204 (772)
T ss_dssp             HHHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHT--STTEEEEEEEETTSCSSSC
T ss_pred             hhcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHh--cCCcEEEEEEcCCCCcchh
Confidence                       100    011134589999999987321   23345567778888876  4589999999999887777


Q ss_pred             hH-HHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHH-HHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHh
Q 024325          192 DH-ELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE-SLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI  263 (269)
Q Consensus       192 ~~-~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~  263 (269)
                      +. .++..+...+.|+++|+||+|+.+......   .+.. ..........+++++||++|.|+++|++.|.+.
T Consensus       205 d~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~~~---~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          205 DALKIAKEVDPQGQRTIGVITKLDLMDEGTDAR---DVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             HHHHHHHHHCTTCSSEEEEEECTTSSCTTCCSH---HHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCEEEEEeCcccCCcchhhH---HHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence            76 788888888899999999999987543211   1111 000000113478999999999999999999863

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.80  E-value=3.5e-19  Score=164.05  Aligned_cols=114  Identities=22%  Similarity=0.290  Sum_probs=82.0

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCcc--------------ccC------CCCCceeE---eeEEEeCCcEEEEcCCCC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVV--------------RTS------DKPGLTQT---INFFKLGTKLCLVDLPGY  148 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~--------------~~s------~~~gtt~~---~~~~~~~~~~~lvDtpG~  148 (269)
                      .++|+++|++|+|||||+|+|+......              .++      ..+|+|..   ..+...+..+.+|||||+
T Consensus        13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~   92 (528)
T 3tr5_A           13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGH   92 (528)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCS
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCc
Confidence            3689999999999999999997321000              000      01233332   233344678999999998


Q ss_pred             CCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCc
Q 024325          149 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP  218 (269)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~  218 (269)
                      .+..             ......+..+|.+++|+|+..+...+...++..+...++|+++|+||+|+...
T Consensus        93 ~df~-------------~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~  149 (528)
T 3tr5_A           93 ADFT-------------EDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTR  149 (528)
T ss_dssp             TTCC-------------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCS
T ss_pred             hhHH-------------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccc
Confidence            5421             12333444599999999999988888888888888889999999999999754

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.80  E-value=3.2e-21  Score=180.05  Aligned_cols=161  Identities=16%  Similarity=0.134  Sum_probs=95.1

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcCcCcccc------------------------------CCCCCceeEeeEEE---e
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRT------------------------------SDKPGLTQTINFFK---L  136 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~------------------------------s~~~gtt~~~~~~~---~  136 (269)
                      ...++|+++|++|+|||||+|+|++.. ....                              ...+|+|.+..+..   .
T Consensus       175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~-~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~  253 (592)
T 3mca_A          175 KPVVHLVVTGHVDSGKSTMLGRIMFEL-GEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD  253 (592)
T ss_dssp             CCEEEEEEECCSSSTHHHHHHHHHHHH-HCC-------------------------------------------------
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHc-CCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence            445789999999999999999997531 1111                              11457787765433   3


Q ss_pred             CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCC-----C--CcchHHHHHHHHhhCCc-EEE
Q 024325          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-----V--KPRDHELISLMERSQTK-YQV  208 (269)
Q Consensus       137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~-----~--~~~~~~~~~~l~~~~~p-~ii  208 (269)
                      +..+.||||||+....             .........+|++++|+|+..+     +  ..+..+.+..+...++| +|+
T Consensus       254 ~~~i~iiDTPGh~~f~-------------~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIv  320 (592)
T 3mca_A          254 KKIYEIGDAPGHRDFI-------------SGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVV  320 (592)
T ss_dssp             -----CCEEESSSEEE-------------EECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEE
T ss_pred             CeEEEEEECCChHHHH-------------HHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEE
Confidence            5679999999985321             1112223348999999999864     3  66777888888888887 999


Q ss_pred             EEecCCCCC--chHHHHHHHHHHHHH-HhcCC--CCCCeEEeeCCCCCCHH--------------HHHHHHHHhh
Q 024325          209 VLTKTDTVF--PIDVARRAMQIEESL-KANNS--LVQPVMMVSSKSGAGIR--------------SLRTVLSKIA  264 (269)
Q Consensus       209 v~NK~Dl~~--~~~~~~~~~~~~~~~-~~~~~--~~~~vi~vSa~~g~gi~--------------~L~~~i~~~~  264 (269)
                      |+||+|+..  ..........+...+ .....  ...+++++||++|.|++              .|++.|....
T Consensus       321 viNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~  395 (592)
T 3mca_A          321 SVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLV  395 (592)
T ss_dssp             EEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSC
T ss_pred             EEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhc
Confidence            999999976  333344445555544 22211  13479999999999998              7888887654

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.79  E-value=4.9e-19  Score=164.92  Aligned_cols=157  Identities=18%  Similarity=0.180  Sum_probs=99.5

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCcc-------cc------CCCCCceeEee---EEEe-----CCcEEEEcCCCCCC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVV-------RT------SDKPGLTQTIN---FFKL-----GTKLCLVDLPGYGF  150 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~-------~~------s~~~gtt~~~~---~~~~-----~~~~~lvDtpG~~~  150 (269)
                      ..+|+++|++|+|||||+++|+......       .+      ....|.|....   +.+.     +..+.+|||||+.+
T Consensus         4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d   83 (599)
T 3cb4_D            4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD   83 (599)
T ss_dssp             EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence            4689999999999999999998631110       00      01234444322   1111     25688999999843


Q ss_pred             cchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHH
Q 024325          151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE  230 (269)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~  230 (269)
                      .          ......++   ..+|.+++|+|+..+...+....+..+...++|+++|+||+|+.... .....+.+.+
T Consensus        84 F----------~~ev~~~l---~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~-~~~v~~ei~~  149 (599)
T 3cb4_D           84 F----------SYEVSRSL---AACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAAD-PERVAEEIED  149 (599)
T ss_dssp             G----------HHHHHHHH---HHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCC-HHHHHHHHHH
T ss_pred             H----------HHHHHHHH---HHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCccccc-HHHHHHHHHH
Confidence            1          11122222   23999999999998888877777776777789999999999998653 2333333433


Q ss_pred             HHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          231 SLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       231 ~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      .+   .....+++++||++|.|+++|+++|.+.+.
T Consensus       150 ~l---g~~~~~vi~vSAktg~GI~~Ll~~I~~~lp  181 (599)
T 3cb4_D          150 IV---GIDATDAVRCSAKTGVGVQDVLERLVRDIP  181 (599)
T ss_dssp             HT---CCCCTTCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred             Hh---CCCcceEEEeecccCCCchhHHHHHhhcCC
Confidence            32   112346899999999999999999988764

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.79  E-value=1.1e-20  Score=172.31  Aligned_cols=157  Identities=22%  Similarity=0.262  Sum_probs=110.2

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      ..|+|+++|++|+|||||+++|++. . ...+..+|+|.+...+.   .+..+.||||||+....             ..
T Consensus         3 R~~~V~IvGhvd~GKTTLl~~L~~~-~-v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~-------------~~   67 (501)
T 1zo1_I            3 RAPVVTIMGHVDHGKTSLLEYIRST-K-VASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFT-------------SM   67 (501)
T ss_dssp             CCCCEEEEESTTSSSHHHHHHHHHH-H-HSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCT-------------TS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcC-C-CccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHH-------------HH
Confidence            3578999999999999999999876 2 23344567777664332   35679999999974321             11


Q ss_pred             HHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHH--HHHhcCCCCCCeEEe
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE--SLKANNSLVQPVMMV  245 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~--~~~~~~~~~~~vi~v  245 (269)
                      .......+|++++|+|+.++..++..+.+..+...++|+++|+||+|+..... ......+.+  .+........|++++
T Consensus        68 ~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~-~~v~~~l~~~~~~~~~~~~~~~~v~v  146 (501)
T 1zo1_I           68 RARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADP-DRVKNELSQYGILPEEWGGESQFVHV  146 (501)
T ss_dssp             BCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCC-CCTTCCCCCCCCCTTCCSSSCEEEEC
T ss_pred             HHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCH-HHHHHHHHHhhhhHHHhCCCccEEEE
Confidence            22344569999999999988888888888888888999999999999975311 000000000  000001113689999


Q ss_pred             eCCCCCCHHHHHHHHHHh
Q 024325          246 SSKSGAGIRSLRTVLSKI  263 (269)
Q Consensus       246 Sa~~g~gi~~L~~~i~~~  263 (269)
                      ||++|.|+++|+++|...
T Consensus       147 SAktG~gI~eLle~I~~~  164 (501)
T 1zo1_I          147 SAKAGTGIDELLDAILLQ  164 (501)
T ss_dssp             CTTTCTTCTTHHHHTTTT
T ss_pred             eeeeccCcchhhhhhhhh
Confidence            999999999999998653

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.79  E-value=5.7e-19  Score=159.59  Aligned_cols=152  Identities=19%  Similarity=0.223  Sum_probs=99.2

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCc-Ccc----------------------------ccCCCCCceeEeeE---EEeCC
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQW-GVV----------------------------RTSDKPGLTQTINF---FKLGT  138 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~-~~~----------------------------~~s~~~gtt~~~~~---~~~~~  138 (269)
                      ..++|+++|++|+|||||+++|++.. .+.                            .....+|+|.+..+   ...+.
T Consensus         5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~   84 (435)
T 1jny_A            5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY   84 (435)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence            34689999999999999999998641 000                            00114567776543   23367


Q ss_pred             cEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCC-------CCcchHHHHHHHHhhCC-cEEEEE
Q 024325          139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------VKPRDHELISLMERSQT-KYQVVL  210 (269)
Q Consensus       139 ~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~-------~~~~~~~~~~~l~~~~~-p~iiv~  210 (269)
                      .+.+|||||+.+             +..........+|++++|+|+..+       +..+..+.+..+...++ |+++|+
T Consensus        85 ~~~iiDtpG~~~-------------f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivvi  151 (435)
T 1jny_A           85 FFTIIDAPGHRD-------------FVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAV  151 (435)
T ss_dssp             EEEECCCSSSTT-------------HHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEE
T ss_pred             EEEEEECCCcHH-------------HHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEE
Confidence            899999999843             223344456679999999999876       55566667666666676 599999


Q ss_pred             ecCCCCCc----hHHHHHHHHHHHHHHhcCC--CCCCeEEeeCCCCCCHHH
Q 024325          211 TKTDTVFP----IDVARRAMQIEESLKANNS--LVQPVMMVSSKSGAGIRS  255 (269)
Q Consensus       211 NK~Dl~~~----~~~~~~~~~~~~~~~~~~~--~~~~vi~vSa~~g~gi~~  255 (269)
                      ||+|+.++    .........+.+.+.....  ...+++++||++|.|+++
T Consensus       152 NK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e  202 (435)
T 1jny_A          152 NKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  202 (435)
T ss_dssp             ECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             EcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccc
Confidence            99999873    2233444555555544321  136799999999999974

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.79  E-value=5.2e-19  Score=155.82  Aligned_cols=91  Identities=20%  Similarity=0.215  Sum_probs=69.7

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE---EeCCcEEEEcCCCCCCcchhHHHHHHHHHH
Q 024325           88 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEEL  164 (269)
Q Consensus        88 ~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~---~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~  164 (269)
                      .+.+...|+++|.||+|||||+|+|++..  +.++++|+||++....   ..+..+.++||||+.......      ..+
T Consensus        68 ~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~--~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~------~~~  139 (376)
T 4a9a_A           68 ARTGVASVGFVGFPSVGKSTLLSKLTGTE--SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDG------RGR  139 (376)
T ss_dssp             CBCSSEEEEEECCCCHHHHHHHHHHHSBC--CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----------CH
T ss_pred             eecCCCeEEEECCCCCCHHHHHHHHhCCC--CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhh------hHH
Confidence            34667899999999999999999999984  6789999999998643   347789999999997542211      123


Q ss_pred             HHHHHhcccccceEEEEEeCCC
Q 024325          165 VKEYVSTRVSLKRVCLLIDTKW  186 (269)
Q Consensus       165 ~~~~~~~~~~~d~vl~vid~~~  186 (269)
                      ...++.....+|++++|+|+++
T Consensus       140 g~~~l~~i~~ad~il~vvD~~~  161 (376)
T 4a9a_A          140 GKQVIAVARTCNLLFIILDVNK  161 (376)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTS
T ss_pred             HHHHHHHHHhcCccccccccCc
Confidence            3445555556999999999875

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.79  E-value=4e-19  Score=154.43  Aligned_cols=155  Identities=15%  Similarity=0.015  Sum_probs=100.2

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE---EeC--CcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~---~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      .++|+++|.+|+|||||+|++++.   .....+.+|+.+....   ..+  ..+.+|||||....          ..+..
T Consensus       155 ~~~i~i~G~~~~GKssli~~~~~~---~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~  221 (332)
T 2wkq_A          155 LIKCVVVGDGAVGKTCLLISYTTN---AFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDY----------DRLRP  221 (332)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHS---CCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGG----------TTTGG
T ss_pred             eeEEEEECCCCCChHHHHHHHHhC---CCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhh----------hHHHH
Confidence            478999999999999999999987   2345556666554322   123  34569999997431          11111


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcchH--HHHHHHHhh--CCcEEEEEecCCCCCchHHHHHH----------HHHHHHH
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTDTVFPIDVARRA----------MQIEESL  232 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~~--~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~~~----------~~~~~~~  232 (269)
                         .....+|++++|+|++......+.  .++..+...  ++|+++|+||+|+..........          ....+..
T Consensus       222 ---~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~  298 (332)
T 2wkq_A          222 ---LSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA  298 (332)
T ss_dssp             ---GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred             ---HhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHH
Confidence               223459999999998753322221  344455444  78999999999997643221111          1111111


Q ss_pred             HhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325          233 KANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       233 ~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      ...  ...+++++||++|.|+++++++|.+.+
T Consensus       299 ~~~--~~~~~~~~Sa~~~~gi~~l~~~l~~~~  328 (332)
T 2wkq_A          299 KEI--GAVKYLECSALTQRGLKTVFDEAIRAV  328 (332)
T ss_dssp             HHT--TCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHc--CCcEEEEecCCCCcCHHHHHHHHHHHH
Confidence            111  123899999999999999999998765

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.79  E-value=3.1e-19  Score=142.41  Aligned_cols=155  Identities=15%  Similarity=0.112  Sum_probs=94.8

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeE-e--eEEE--eCCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-I--NFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~-~--~~~~--~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      .++|+++|.+|+|||||+|+|++..   ....+.+|... .  .+..  ....+.+|||||....          ..+..
T Consensus         7 ~~ki~v~G~~~vGKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~   73 (184)
T 1m7b_A            7 KCKIVVVGDSQCGKTALLHVFAKDC---FPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY----------DNVRP   73 (184)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSC---CCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGG----------TTTGG
T ss_pred             EEEEEEECCCCCCHHHHHHHHhcCC---CCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhh----------hhhHH
Confidence            4689999999999999999999873   12222222222 1  1111  1346899999996321          11111


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcch--HHHHHHHHh--hCCcEEEEEecCCCCCchHHHHH----------HHHHHHHH
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFPIDVARR----------AMQIEESL  232 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~--~~~~~~l~~--~~~p~iiv~NK~Dl~~~~~~~~~----------~~~~~~~~  232 (269)
                         .....+|++++|+|.+.......  ..++..+..  .+.|+++|+||+|+.........          .+...+..
T Consensus        74 ---~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~  150 (184)
T 1m7b_A           74 ---LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMA  150 (184)
T ss_dssp             ---GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHH
T ss_pred             ---hhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHH
Confidence               12345999999999875322222  233344444  36899999999999753211000          01111112


Q ss_pred             HhcCCCCCCeEEeeCC-CCCCHHHHHHHHHHhh
Q 024325          233 KANNSLVQPVMMVSSK-SGAGIRSLRTVLSKIA  264 (269)
Q Consensus       233 ~~~~~~~~~vi~vSa~-~g~gi~~L~~~i~~~~  264 (269)
                      ....  ..+++++||+ +|.|+++++++|.+.+
T Consensus       151 ~~~~--~~~~~e~Sa~~~~~gi~~l~~~i~~~~  181 (184)
T 1m7b_A          151 KQIG--AATYIECSALQSENSVRDIFHVATLAC  181 (184)
T ss_dssp             HHHT--CSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred             HHcC--CcEEEEeeecCCCcCHHHHHHHHHHHH
Confidence            1111  3589999999 6899999999998765

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.79  E-value=2.9e-19  Score=143.97  Aligned_cols=156  Identities=16%  Similarity=0.114  Sum_probs=92.0

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe---eEEEeC--CcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~---~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      .++|+++|.+|+|||||+|++++. ...+++.+++++.+.   .....+  ..+.+|||+|.....         ..+..
T Consensus         6 ~~kv~lvG~~~vGKSsL~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~---------~~~~~   75 (192)
T 2cjw_A            6 YYRVVLIGEQGVGKSTLANIFAGV-HDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGEN---------EWLHD   75 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH-SCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC-------------CTTGG
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC-cCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchh---------hhHHH
Confidence            468999999999999999999975 223444444443332   111122  246789999964310         01111


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCC
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP  241 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (269)
                      .|.+.   +|++++|+|..+...... ..+...+..    .+.|+++|.||+|+........  .........   ...+
T Consensus        76 ~~~~~---~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~--~~~~~~a~~---~~~~  147 (192)
T 2cjw_A           76 HCMQV---GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSV--SEGRAXAVV---FDXK  147 (192)
T ss_dssp             GHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCH--HHHHHHHHH---TTCE
T ss_pred             hhccc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccH--HHHHHHHHH---hCCc
Confidence            22222   789999999864221111 233333332    3689999999999864322111  011111111   2457


Q ss_pred             eEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          242 VMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       242 vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      ++++||++|.|+++++++|.+.+.
T Consensus       148 ~~e~SA~~g~~v~~lf~~l~~~~~  171 (192)
T 2cjw_A          148 FIETSAAVQHNVKELFEGIVRQVR  171 (192)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             eEEeccccCCCHHHHHHHHHHHHH
Confidence            899999999999999999988663

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.78  E-value=6.3e-19  Score=163.94  Aligned_cols=158  Identities=22%  Similarity=0.236  Sum_probs=101.7

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCcc-------ccC------CCCCceeEe---eEEEe-----CCcEEEEcCCCCC
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVV-------RTS------DKPGLTQTI---NFFKL-----GTKLCLVDLPGYG  149 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~-------~~s------~~~gtt~~~---~~~~~-----~~~~~lvDtpG~~  149 (269)
                      ..++|+++|++|+|||||+++|+......       .+.      ...|.|...   .+.+.     +..+.+|||||+.
T Consensus         5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~   84 (600)
T 2ywe_A            5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV   84 (600)
T ss_dssp             GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence            34689999999999999999998631110       000      113333321   11111     2468899999984


Q ss_pred             CcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHH
Q 024325          150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE  229 (269)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~  229 (269)
                      +-          ......+   +..+|.+++|+|+..+...+....+..+...++|+++|+||+|+.... .....+.+.
T Consensus        85 dF----------~~ev~r~---l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~-~~~v~~el~  150 (600)
T 2ywe_A           85 DF----------SYEVSRA---LAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSAD-VDRVKKQIE  150 (600)
T ss_dssp             GG----------HHHHHHH---HHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCC-HHHHHHHHH
T ss_pred             hH----------HHHHHHH---HHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccC-HHHHHHHHH
Confidence            31          1111222   234999999999998888777777776777899999999999998653 223333333


Q ss_pred             HHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          230 ESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       230 ~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      +.+   .....+++++||++|.|+++|+++|.+.+.
T Consensus       151 ~~l---g~~~~~vi~vSAktg~GI~~Lle~I~~~lp  183 (600)
T 2ywe_A          151 EVL---GLDPEEAILASAKEGIGIEEILEAIVNRIP  183 (600)
T ss_dssp             HTS---CCCGGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             Hhh---CCCcccEEEEEeecCCCchHHHHHHHHhcc
Confidence            221   111235899999999999999999988764

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.78  E-value=1.3e-19  Score=161.45  Aligned_cols=86  Identities=22%  Similarity=0.189  Sum_probs=47.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE------------------------e---CCcEEEEcCC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK------------------------L---GTKLCLVDLP  146 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~------------------------~---~~~~~lvDtp  146 (269)
                      +|+++|.||+|||||+|+|++. . +.++++|+||.+.....                        .   ...+.+||||
T Consensus         2 kI~ivG~pnvGKSTL~n~L~~~-~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtp   79 (397)
T 1wxq_A            2 EIGVVGKPNVGKSTFFSAATLV-D-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA   79 (397)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred             EEEEECCCCCCHHHHHHHHHCC-C-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECC
Confidence            7999999999999999999998 4 77899999998764321                        0   2468999999


Q ss_pred             CCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCC
Q 024325          147 GYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG  187 (269)
Q Consensus       147 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~  187 (269)
                      |+.....      ....+...++.....+|++++|+|+..+
T Consensus        80 G~~~~a~------~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           80 GLVPGAH------EGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             ---------------------CCCSSTTCSEEEEEEETTCC
T ss_pred             Ccccchh------hhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            9854211      1123445566667789999999999764

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.78  E-value=1.1e-19  Score=165.15  Aligned_cols=152  Identities=18%  Similarity=0.197  Sum_probs=101.9

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcC-c----------------------cccCC------CCCceeEeeE---EEeCCc
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWG-V----------------------VRTSD------KPGLTQTINF---FKLGTK  139 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~-~----------------------~~~s~------~~gtt~~~~~---~~~~~~  139 (269)
                      .++|+++|++|+|||||+|+|++... +                      +.+.+      ..|+|.+..+   ...+..
T Consensus         7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~   86 (458)
T 1f60_A            7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQ   86 (458)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEE
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCce
Confidence            46899999999999999999986410 0                      00111      2566666532   233567


Q ss_pred             EEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCc-------chHHHHHHHHhhCCc-EEEEEe
Q 024325          140 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKP-------RDHELISLMERSQTK-YQVVLT  211 (269)
Q Consensus       140 ~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~-------~~~~~~~~l~~~~~p-~iiv~N  211 (269)
                      +.+|||||+..             +..........+|++++|+|+..+..+       +..+.+..+...++| +++|+|
T Consensus        87 ~~iiDtPGh~~-------------f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviN  153 (458)
T 1f60_A           87 VTVIDAPGHRD-------------FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVN  153 (458)
T ss_dssp             EEEEECCCCTT-------------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             EEEEECCCcHH-------------HHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEE
Confidence            99999999732             333445566779999999999865322       445555666666776 999999


Q ss_pred             cCCCCC--chHHHHHHHHHHHHHHhcCC--CCCCeEEeeCCCCCCHHHH
Q 024325          212 KTDTVF--PIDVARRAMQIEESLKANNS--LVQPVMMVSSKSGAGIRSL  256 (269)
Q Consensus       212 K~Dl~~--~~~~~~~~~~~~~~~~~~~~--~~~~vi~vSa~~g~gi~~L  256 (269)
                      |+|+.+  ..........+.+.+.....  ...+++++||++|.|++++
T Consensus       154 K~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          154 KMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             CGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             ccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            999984  23333444455554443321  1368999999999999743

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.78  E-value=3.4e-18  Score=166.68  Aligned_cols=161  Identities=20%  Similarity=0.222  Sum_probs=112.0

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCc---Ccc-----------ccCCCCCceeEee---EEEeCCcEEEEcCCCCCCcch
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQW---GVV-----------RTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYA  153 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~---~~~-----------~~s~~~gtt~~~~---~~~~~~~~~lvDtpG~~~~~~  153 (269)
                      ..++|+++|++|+|||||+++|++..   ...           ......|+|.+..   +...+..+.+|||||+     
T Consensus       295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGH-----  369 (1289)
T 3avx_A          295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGH-----  369 (1289)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCH-----
T ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCCh-----
Confidence            45789999999999999999998741   000           0112455665542   2234578999999996     


Q ss_pred             hHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCc-EEEEEecCCCCCchH-HHHHHHHHHHH
Q 024325          154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPID-VARRAMQIEES  231 (269)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p-~iiv~NK~Dl~~~~~-~~~~~~~~~~~  231 (269)
                              ..+..........+|++++|+|+..+...+..+.+..+...++| +++|+||+|+.+..+ .......+.+.
T Consensus       370 --------edF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~el  441 (1289)
T 3avx_A          370 --------ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVREL  441 (1289)
T ss_dssp             --------HHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHHH
T ss_pred             --------HHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHHHHHHHHH
Confidence                    23344555667779999999999988888888888888888999 789999999986433 22333445555


Q ss_pred             HHhcC--CCCCCeEEeeCCCC--------CCHHHHHHHHHHhh
Q 024325          232 LKANN--SLVQPVMMVSSKSG--------AGIRSLRTVLSKIA  264 (269)
Q Consensus       232 ~~~~~--~~~~~vi~vSa~~g--------~gi~~L~~~i~~~~  264 (269)
                      +....  ....|++++||++|        .|+++|++.|...+
T Consensus       442 Lk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I  484 (1289)
T 3avx_A          442 LSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI  484 (1289)
T ss_dssp             HHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred             HHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence            54432  12478999999999        57999999998754

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.77  E-value=1.4e-18  Score=152.99  Aligned_cols=156  Identities=18%  Similarity=0.221  Sum_probs=99.0

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcC-----cCccccCCCCCcee-------E------------eeE-------------
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQ-----WGVVRTSDKPGLTQ-------T------------INF-------------  133 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~-----~~~~~~s~~~gtt~-------~------------~~~-------------  133 (269)
                      ..+.|+++|.+|+|||||+++|...     .++..+...|+.+.       +            ...             
T Consensus        78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~  157 (355)
T 3p32_A           78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVT  157 (355)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccchh
Confidence            4579999999999999999998642     12222222222211       0            000             


Q ss_pred             ----------EEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhC
Q 024325          134 ----------FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ  203 (269)
Q Consensus       134 ----------~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~  203 (269)
                                ...+..+.||||||++.+.         ..+       ...+|++++|+|+..+.....  +..  ....
T Consensus       158 ~~t~d~i~~~~~~~~~~iiiDTpGi~~~~---------~~~-------~~~aD~vl~V~d~~~~~~~~~--l~~--~~~~  217 (355)
T 3p32_A          158 RATRETVVLLEAAGFDVILIETVGVGQSE---------VAV-------ANMVDTFVLLTLARTGDQLQG--IKK--GVLE  217 (355)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEEECSCSSHH---------HHH-------HTTCSEEEEEEESSTTCTTTT--CCT--TSGG
T ss_pred             HHHHHHHHHHhhCCCCEEEEeCCCCCcHH---------HHH-------HHhCCEEEEEECCCCCccHHH--HHH--hHhh
Confidence                      0125679999999986521         111       134999999999864322111  101  0124


Q ss_pred             CcEEEEEecCCCCCchHHHHHHHHHHHHHHhcC----CCCCCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325          204 TKYQVVLTKTDTVFPIDVARRAMQIEESLKANN----SLVQPVMMVSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       204 ~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~----~~~~~vi~vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      .|+++|+||+|+............+...+....    .+..|++++||++|+|+++|+++|.+.+..
T Consensus       218 ~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          218 LADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             GCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            699999999999765555444555555443322    235789999999999999999999887654

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.77  E-value=7.8e-19  Score=142.96  Aligned_cols=155  Identities=15%  Similarity=0.137  Sum_probs=95.0

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCcee-Eee-EEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ-TIN-FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~-~~~-~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      ..+|+++|.+|+|||||+|+|++.. .  ...+..|+. +.. ....   ...+.+|||||....          ..+..
T Consensus        28 ~~ki~vvG~~~vGKSsLi~~l~~~~-~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~~   94 (205)
T 1gwn_A           28 KCKIVVVGDSQCGKTALLHVFAKDC-F--PENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY----------DNVRP   94 (205)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSC-C--CSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGG----------TTTGG
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCC-C--CCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhh----------hHHHH
Confidence            3689999999999999999999873 2  222222222 221 1111   246899999996321          11111


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcch--HHHHHHHHh--hCCcEEEEEecCCCCCchHHHHH----------HHHHHHHH
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFPIDVARR----------AMQIEESL  232 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~--~~~~~~l~~--~~~p~iiv~NK~Dl~~~~~~~~~----------~~~~~~~~  232 (269)
                      .   ....+|++++|+|.........  ..++..+..  .+.|+++|+||+|+.........          .....+..
T Consensus        95 ~---~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~  171 (205)
T 1gwn_A           95 L---SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMA  171 (205)
T ss_dssp             G---GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHH
T ss_pred             h---hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHH
Confidence            1   2345999999999875322222  234444444  36899999999999753211000          01111222


Q ss_pred             HhcCCCCCCeEEeeCC-CCCCHHHHHHHHHHhh
Q 024325          233 KANNSLVQPVMMVSSK-SGAGIRSLRTVLSKIA  264 (269)
Q Consensus       233 ~~~~~~~~~vi~vSa~-~g~gi~~L~~~i~~~~  264 (269)
                      ....  ..+++++||+ +|.|++++++.|.+.+
T Consensus       172 ~~~~--~~~~~e~SAk~~~~gv~~lf~~l~~~~  202 (205)
T 1gwn_A          172 KQIG--AATYIECSALQSENSVRDIFHVATLAC  202 (205)
T ss_dssp             HHHT--CSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred             HHcC--CCEEEEeeeccCCcCHHHHHHHHHHHH
Confidence            1111  2579999999 6899999999998765

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.77  E-value=4.1e-21  Score=155.42  Aligned_cols=154  Identities=18%  Similarity=0.150  Sum_probs=90.3

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe--eEEEe-C--CcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~--~~~~~-~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      .++|+++|.+|+|||||+|+|++..  ......++++.+.  ..... +  ..+.+|||||......          +..
T Consensus        33 ~~ki~vvG~~~~GKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------~~~  100 (199)
T 3l0i_B           33 LFKLLLIGDSGVGKSCLLLRFADDT--YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT----------ITS  100 (199)
T ss_dssp             EEEEEEECCTTSCCTTTTTSSBCCC--CCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCC----------CSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCC--CCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHH----------HHH
Confidence            4799999999999999999999863  1122222333332  22222 2  4689999999643210          111


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHhh---CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  242 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~~---~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  242 (269)
                      .   ....+|++++|+|+........ ..++..+...   +.|+++|+||+|+........  ........   ....++
T Consensus       101 ~---~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~--~~~~~~~~---~~~~~~  172 (199)
T 3l0i_B          101 S---YYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDY--TTAKEFAD---SLGIPF  172 (199)
T ss_dssp             C-----CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCS--CC-CHHHH---TTTCCB
T ss_pred             H---HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCH--HHHHHHHH---HcCCeE
Confidence            1   2234899999999875322111 2344444432   689999999999975422110  00111111   124689


Q ss_pred             EEeeCCCCCCHHHHHHHHHHhhh
Q 024325          243 MMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       243 i~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      +++||++|.|+++++++|.+.+.
T Consensus       173 ~~vSA~~g~gv~~l~~~l~~~l~  195 (199)
T 3l0i_B          173 LETSAKNATNVEQSFMTMAAEIK  195 (199)
T ss_dssp             CCCCC---HHHHHHHHHHTTTTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999987764

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.76  E-value=1.8e-18  Score=157.53  Aligned_cols=153  Identities=20%  Similarity=0.200  Sum_probs=92.6

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCc-----------------------cccCC------CCCceeEee---EEEeCCc
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGV-----------------------VRTSD------KPGLTQTIN---FFKLGTK  139 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~-----------------------~~~s~------~~gtt~~~~---~~~~~~~  139 (269)
                      .++|+++|++|+|||||+++|+.....                       +.+.+      ..|+|.+..   +...+..
T Consensus        43 ~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~~  122 (467)
T 1r5b_A           43 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRR  122 (467)
T ss_dssp             EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEE
T ss_pred             eeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCeE
Confidence            468999999999999999999752110                       01111      345666653   2223667


Q ss_pred             EEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCC-------CcchHHHHHHHHhhCCc-EEEEEe
Q 024325          140 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-------KPRDHELISLMERSQTK-YQVVLT  211 (269)
Q Consensus       140 ~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~-------~~~~~~~~~~l~~~~~p-~iiv~N  211 (269)
                      +.+|||||+.             .+...+......+|++++|+|+..+.       ..+..+.+..+...++| +++|+|
T Consensus       123 ~~iiDtPGh~-------------~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviN  189 (467)
T 1r5b_A          123 FSLLDAPGHK-------------GYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVIN  189 (467)
T ss_dssp             EEECCCCC------------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEE
T ss_pred             EEEEECCCcH-------------HHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEE
Confidence            9999999973             22334445556799999999998764       24556666667777888 999999


Q ss_pred             cCCCCCc----hHHHHHHHHHHHHHHhc-CCC---CCCeEEeeCCCCCCHHHHH
Q 024325          212 KTDTVFP----IDVARRAMQIEESLKAN-NSL---VQPVMMVSSKSGAGIRSLR  257 (269)
Q Consensus       212 K~Dl~~~----~~~~~~~~~~~~~~~~~-~~~---~~~vi~vSa~~g~gi~~L~  257 (269)
                      |+|+...    .........+.+.+... ...   ..+++++||++|.|+++++
T Consensus       190 K~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          190 KMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             CTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             CccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence            9999642    22333334444444332 111   3679999999999998744

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.75  E-value=5.3e-18  Score=157.12  Aligned_cols=154  Identities=17%  Similarity=0.220  Sum_probs=94.0

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCcee-EeeEE----------E---eCCcEEEEcCCCCCCcchhH
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ-TINFF----------K---LGTKLCLVDLPGYGFAYAKE  155 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~-~~~~~----------~---~~~~~~lvDtpG~~~~~~~~  155 (269)
                      ....+|+++|.+|||||||+|+|++.. .  ......|.. +....          .   .+..+.+|||||......  
T Consensus        39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~-~--~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~--  113 (535)
T 3dpu_A           39 LQEIKVHLIGDGMAGKTSLLKQLIGET-F--DPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHA--  113 (535)
T ss_dssp             CCEEEEEEESSSCSSHHHHHHHHHC--------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTT--
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhcCC-C--CCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHH--
Confidence            445799999999999999999999873 1  122221211 11100          1   146799999999643211  


Q ss_pred             HHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhC--CcEEEEEecCCCCCchHHHHHHHHHHHHHH
Q 024325          156 EVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ--TKYQVVLTKTDTVFPIDVARRAMQIEESLK  233 (269)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~--~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~  233 (269)
                              +...++..   +|++++|+|++..  .....++..+....  .|+++|+||+|+....+...  +.+.+...
T Consensus       114 --------~~~~~l~~---~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~--~~~~~~~~  178 (535)
T 3dpu_A          114 --------SHQFFMTR---SSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQ--KKINERFP  178 (535)
T ss_dssp             --------TCHHHHHS---SEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCH--HHHHHHCG
T ss_pred             --------HHHHHccC---CcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCH--HHHHHHHH
Confidence                    11223332   8999999998743  33456677776654  89999999999976433211  12222222


Q ss_pred             hcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325          234 ANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       234 ~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                         ....+++++||++|.|+++|++.|.+.+..
T Consensus       179 ---~~~~~~~~vSA~~g~gi~eL~~~l~~~~~~  208 (535)
T 3dpu_A          179 ---AIENRFHRISCKNGDGVESIAKSLKSAVLH  208 (535)
T ss_dssp             ---GGTTCEEECCC-----CTTHHHHHHHHHTC
T ss_pred             ---hcCCceEEEecCcccCHHHHHHHHHHHHhc
Confidence               235689999999999999999999987654

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.73  E-value=1e-17  Score=147.69  Aligned_cols=164  Identities=19%  Similarity=0.253  Sum_probs=82.0

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCC------CceeEeeEEE-----e--CCcEEEEcCCCCCCcchhH----
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP------GLTQTINFFK-----L--GTKLCLVDLPGYGFAYAKE----  155 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~------gtt~~~~~~~-----~--~~~~~lvDtpG~~~~~~~~----  155 (269)
                      ++|+++|++|+|||||+|+|++. ........+      ..|.......     .  ...+.+|||||+++.....    
T Consensus        38 ~~I~vvG~~g~GKSTLln~L~~~-~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~  116 (361)
T 2qag_A           38 FTLMVVGESGLGKSTLINSLFLT-DLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK  116 (361)
T ss_dssp             ECEEECCCTTSCHHHHHHHHTTC-CC---------------CEEEEEEEEC----CEEEEEEEEC--------------C
T ss_pred             EEEEEEcCCCCCHHHHHHHHhCC-CCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHH
Confidence            67999999999999999999876 222221111      1222221111     1  2358999999996542211    


Q ss_pred             HHHHHHHHHHHHHHhcccc----------cceEEEEEeC-CCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHH
Q 024325          156 EVKDAWEELVKEYVSTRVS----------LKRVCLLIDT-KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARR  224 (269)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~----------~d~vl~vid~-~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~  224 (269)
                      .+..........|+.....          +++++|+++. ..++...+..+++.+. .++|+|+|+||+|+....++...
T Consensus       117 ~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~-~~~piIlV~NK~Dl~~~~ev~~~  195 (361)
T 2qag_A          117 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLTLKERERL  195 (361)
T ss_dssp             CTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC-S-SCEEEEEECCSSSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc-cCCCEEEEEECCCCCCHHHHHHH
Confidence            1111111111234433221          3568888876 5566666666666664 57899999999999987655443


Q ss_pred             HHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHH
Q 024325          225 AMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK  262 (269)
Q Consensus       225 ~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~  262 (269)
                      ...+.+...   ..+.+++++||++|.| ++.+.++.+
T Consensus       196 k~~i~~~~~---~~~i~~~~~Sa~~~~~-~e~~~~l~~  229 (361)
T 2qag_A          196 KKRILDEIE---EHNIKIYHLPDAESDE-DEDFKEQTR  229 (361)
T ss_dssp             HHHHHHHTT---CC-CCSCCCC----------CHHHHH
T ss_pred             HHHHHHHHH---HCCCCEEeCCCcCCCc-chhHHHHHH
Confidence            334433332   3357899999999988 555544443

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.73  E-value=7.3e-18  Score=137.97  Aligned_cols=118  Identities=21%  Similarity=0.276  Sum_probs=74.7

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcCcCccc--cCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVR--TSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~--~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      ...++|+++|++|+|||||+|+|++.. ...  .+..++++.+.    .+..+.+|||||+...          ......
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~-~~~~~~~~~~~~~~~~----~~~~~~l~Dt~G~~~~----------~~~~~~   74 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTDS-VRPTVVSQEPLSAADY----DGSGVTLVDFPGHVKL----------RYKLSD   74 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHSS-CCCBCCCSSCEEETTG----GGSSCEEEECCCCGGG----------THHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC-CCCeeeecCceEEEEe----eCceEEEEECCCcHHH----------HHHHHH
Confidence            456899999999999999999999873 211  12223233222    4567999999998432          111222


Q ss_pred             HHh-cccccceEEEEEeCC-C--CCCcchHHHHHHHHh------hCCcEEEEEecCCCCCchHHH
Q 024325          168 YVS-TRVSLKRVCLLIDTK-W--GVKPRDHELISLMER------SQTKYQVVLTKTDTVFPIDVA  222 (269)
Q Consensus       168 ~~~-~~~~~d~vl~vid~~-~--~~~~~~~~~~~~l~~------~~~p~iiv~NK~Dl~~~~~~~  222 (269)
                      |+. ....+|++++|+|+. .  .+......+...+..      .++|+++|+||+|+.......
T Consensus        75 ~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~  139 (218)
T 1nrj_B           75 YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPS  139 (218)
T ss_dssp             HHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHH
T ss_pred             HHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHH
Confidence            222 223479999999997 2  222222333333322      478999999999998765433

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.73  E-value=2.6e-17  Score=147.07  Aligned_cols=159  Identities=22%  Similarity=0.299  Sum_probs=104.9

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE--Ee--CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF--KL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~--~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      ...|+++|++|||||||+|+|++..  ..+++++++|......  ..  ...+.++||||+.......      ..+...
T Consensus       157 g~~VgLVG~~gAGKSTLL~~Lsg~~--~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~------~~L~~~  228 (416)
T 1udx_A          157 IADVGLVGYPNAGKSSLLAAMTRAH--PKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEG------KGLGLE  228 (416)
T ss_dssp             SCSEEEECCGGGCHHHHHHHHCSSC--CEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGS------CCSCHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHHcCC--ccccCcccceecceeeEEEecCcceEEEEeccccccchhhh------hhhhHH
Confidence            3579999999999999999999973  3567888887665432  22  2678999999986531110      001112


Q ss_pred             HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh-----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCC
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP  241 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~-----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (269)
                      +......++.+++++|.+ .....+ ....+.+..     ...|.++|+||+|+... .   ....+.+.+..   ...+
T Consensus       229 fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~-~---~~~~l~~~l~~---~g~~  300 (416)
T 1udx_A          229 FLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE-E---AVKALADALAR---EGLA  300 (416)
T ss_dssp             HHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH-H---HHHHHHHHHHT---TTSC
T ss_pred             HHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH-H---HHHHHHHHHHh---cCCe
Confidence            233344589999999986 111111 112222221     35899999999999865 2   22233333322   2468


Q ss_pred             eEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325          242 VMMVSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       242 vi~vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      ++++||++++|+++|+++|.+.+..
T Consensus       301 vi~iSA~~g~gi~eL~~~i~~~l~~  325 (416)
T 1udx_A          301 VLPVSALTGAGLPALKEALHALVRS  325 (416)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             EEEEECCCccCHHHHHHHHHHHHHh
Confidence            9999999999999999999988754

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.72  E-value=1.4e-17  Score=145.94  Aligned_cols=156  Identities=18%  Similarity=0.143  Sum_probs=96.8

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcC-----cCccccCCCCCceeE----------------------------------
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQ-----WGVVRTSDKPGLTQT----------------------------------  130 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~-----~~~~~~s~~~gtt~~----------------------------------  130 (269)
                      ...+.|+++|++|+|||||+|.|++.     ..+..++..++++..                                  
T Consensus        54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~  133 (341)
T 2p67_A           54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA  133 (341)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchh
Confidence            34678999999999999999999742     123333333333220                                  


Q ss_pred             ---ee-----EEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhh
Q 024325          131 ---IN-----FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS  202 (269)
Q Consensus       131 ---~~-----~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~  202 (269)
                         ..     ....+..+.+|||||+....         ..    .   ...+|.+++|+|++.+.....   +.. ...
T Consensus       134 ~~~~~~~~~~~~~~~~~i~liDTpG~~~~~---------~~----~---~~~aD~vl~Vvd~~~~~~~~~---l~~-~~~  193 (341)
T 2p67_A          134 SQRARELMLLCEAAGYDVVIVETVGVGQSE---------TE----V---ARMVDCFISLQIAGGGDDLQG---IKK-GLM  193 (341)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEEEEECCTTHH---------HH----H---HTTCSEEEEEECC------CC---CCH-HHH
T ss_pred             HHHHHHHHHHhhccCCCEEEEeCCCccchH---------HH----H---HHhCCEEEEEEeCCccHHHHH---HHH-hhh
Confidence               00     00125689999999986421         01    1   134999999999864322111   000 112


Q ss_pred             CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCC----CCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          203 QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNS----LVQPVMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       203 ~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~----~~~~vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      +.|.++|+||+|+............+.+.+.....    +..+++++||++|.|+++|+++|.+.+.
T Consensus       194 ~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          194 EVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             cccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            46899999999998754444444445444433221    1457899999999999999999988654

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.72  E-value=3.9e-17  Score=150.56  Aligned_cols=114  Identities=18%  Similarity=0.221  Sum_probs=78.5

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCcc--------------ccC------CCCCceeEe---eEEEeCCcEEEEcCCCCC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVV--------------RTS------DKPGLTQTI---NFFKLGTKLCLVDLPGYG  149 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~--------------~~s------~~~gtt~~~---~~~~~~~~~~lvDtpG~~  149 (269)
                      ++|+++|++|+|||||+|+|+......              .+.      ...|+|...   .+...+..+.+|||||+.
T Consensus        14 ~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~~   93 (529)
T 2h5e_A           14 RTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHE   93 (529)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCST
T ss_pred             CEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCCh
Confidence            589999999999999999998641100              011      122333222   233346789999999984


Q ss_pred             CcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCch
Q 024325          150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPI  219 (269)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~  219 (269)
                      +-.             ......+..+|.+++|+|+..+...+...++..+...++|+++|+||+|+....
T Consensus        94 df~-------------~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~  150 (529)
T 2h5e_A           94 DFS-------------EDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRD  150 (529)
T ss_dssp             TCC-------------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSC
T ss_pred             hHH-------------HHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCcccc
Confidence            321             112223445999999999998887777778887777789999999999998653

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.71  E-value=9e-17  Score=135.15  Aligned_cols=86  Identities=19%  Similarity=0.148  Sum_probs=57.8

Q ss_pred             ccceEEEEEeCCCC--CCcch-HHHHHHHH----hhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEee
Q 024325          174 SLKRVCLLIDTKWG--VKPRD-HELISLME----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS  246 (269)
Q Consensus       174 ~~d~vl~vid~~~~--~~~~~-~~~~~~l~----~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vS  246 (269)
                      .+|++++|+|++..  ..... ..++..+.    ..++|+++|+||+|+.......    .........  ...+++++|
T Consensus       162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~----~~~~~~~~~--~~~~~~e~S  235 (255)
T 3c5h_A          162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIR----DAHTFALSK--KNLQVVETS  235 (255)
T ss_dssp             ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHH----HHHHHHHTS--SSCCEEECB
T ss_pred             cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHH----HHHHHHHhc--CCCeEEEEE
Confidence            48999999999764  22222 23333332    2478999999999997543332    222222221  246899999


Q ss_pred             CCCCCCHHHHHHHHHHhhh
Q 024325          247 SKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       247 a~~g~gi~~L~~~i~~~~~  265 (269)
                      |++|.|+++++++|.+.+.
T Consensus       236 Ak~g~gv~elf~~l~~~l~  254 (255)
T 3c5h_A          236 ARSNVNVDLAFSTLVQLID  254 (255)
T ss_dssp             TTTTBSHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHhc
Confidence            9999999999999988764

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.71  E-value=1.1e-16  Score=135.82  Aligned_cols=123  Identities=21%  Similarity=0.181  Sum_probs=85.1

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE---EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~---~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      .++|+++|.+|+|||||+|+|++. ....+++.+++|.+....   ..+..+.+|||||+.+......  ..+.. ...|
T Consensus        39 ~~~I~vvG~~g~GKSSLin~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~--~~~~~-i~~~  114 (270)
T 1h65_A           39 SLTILVMGKGGVGKSSTVNSIIGE-RVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYIND--MALNI-IKSF  114 (270)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHTS-CCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECH--HHHHH-HHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCC-CcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchH--HHHHH-HHHH
Confidence            479999999999999999999998 556678888888765432   2356799999999865421111  11111 2222


Q ss_pred             HhcccccceEEEEEeCCC-CCCcchHHHHHHHHhh-C----CcEEEEEecCCCCCch
Q 024325          169 VSTRVSLKRVCLLIDTKW-GVKPRDHELISLMERS-Q----TKYQVVLTKTDTVFPI  219 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~-~~~~~~~~~~~~l~~~-~----~p~iiv~NK~Dl~~~~  219 (269)
                      +. ...+|++++|+|... .+...+..++..+... +    .|+++|+||+|+.++.
T Consensus       115 ~~-~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~  170 (270)
T 1h65_A          115 LL-DKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD  170 (270)
T ss_dssp             TT-TCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred             hh-cCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence            22 235899999987753 3444556677766543 2    6999999999998654

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.70  E-value=2.5e-17  Score=145.29  Aligned_cols=160  Identities=23%  Similarity=0.265  Sum_probs=98.0

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCcee-----------------------------------------
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ-----------------------------------------  129 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~-----------------------------------------  129 (269)
                      ..|.|+++|.+|||||||+|+|+|. .....+.. .+|+                                         
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~-~~lp~~~~-~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~  110 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGK-DFLPRGSG-IVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDE  110 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTS-CCSCCCSS-SCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCC-CcCCCCCC-cccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHH
Confidence            5689999999999999999999996 22111110 0110                                         


Q ss_pred             -------------Ee---eEE-EeCCcEEEEcCCCCCCcch---hHHHHHHHHHHHHHHHhcccccceEEEEEeCCCC-C
Q 024325          130 -------------TI---NFF-KLGTKLCLVDLPGYGFAYA---KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-V  188 (269)
Q Consensus       130 -------------~~---~~~-~~~~~~~lvDtpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~-~  188 (269)
                                   +.   ... .....+.+|||||+.....   .......+..+...|+..   +|++++++|+... .
T Consensus       111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~---~d~iilvv~~~~~~~  187 (360)
T 3t34_A          111 TDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEK---PNCIILAISPANQDL  187 (360)
T ss_dssp             HHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHS---SSEEEEEEEETTSCG
T ss_pred             HHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhc---CCeEEEEeecccCCc
Confidence                         00   000 1134689999999876421   122333445555666554   8999999986532 2


Q ss_pred             Ccc-hHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHH
Q 024325          189 KPR-DHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL  260 (269)
Q Consensus       189 ~~~-~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i  260 (269)
                      ... ...++..+...+.|+++|+||+|+.++....  ...+..   .......+++.+|++++.|+++.+.++
T Consensus       188 ~~~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~--~~~~~~---~~~~~~~~~~~v~~~s~~~i~~~~~~~  255 (360)
T 3t34_A          188 ATSDAIKISREVDPSGDRTFGVLTKIDLMDKGTDA--VEILEG---RSFKLKYPWVGVVNRSQADINKNVDMI  255 (360)
T ss_dssp             GGCHHHHHHHHSCTTCTTEEEEEECGGGCCTTCCS--HHHHTT---SSSCCSSCCEEECCCCHHHHHTTCCHH
T ss_pred             CCHHHHHHHHHhcccCCCEEEEEeCCccCCCcccH--HHHHcC---ccccccCCeEEEEECChHHhccCCCHH
Confidence            222 2445555555678999999999998653211  111111   112335789999999999888765543

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.70  E-value=3.3e-17  Score=155.67  Aligned_cols=116  Identities=18%  Similarity=0.200  Sum_probs=79.0

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcCcC-cc---------ccCC------CCCceeEee---EEEeCCcEEEEcCCCCCC
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQWG-VV---------RTSD------KPGLTQTIN---FFKLGTKLCLVDLPGYGF  150 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~-~~---------~~s~------~~gtt~~~~---~~~~~~~~~lvDtpG~~~  150 (269)
                      ...++|+++|++|+|||||+|+|++... ..         .+.+      .+++|....   +...+..+.+|||||+.+
T Consensus         8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d   87 (693)
T 2xex_A            8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVD   87 (693)
T ss_dssp             TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSS
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcc
Confidence            4467999999999999999999985211 00         0111      234443332   223367799999999854


Q ss_pred             cchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCc
Q 024325          151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP  218 (269)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~  218 (269)
                      -.          .....++.   .+|++++|+|+..+...++..++..+...++|+++|+||+|+...
T Consensus        88 f~----------~~~~~~l~---~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~  142 (693)
T 2xex_A           88 FT----------VEVERSLR---VLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGA  142 (693)
T ss_dssp             CC----------HHHHHHHH---HCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred             hH----------HHHHHHHH---HCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCcccc
Confidence            21          01112222   299999999999888888888888888889999999999999864

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.70  E-value=7.9e-17  Score=149.21  Aligned_cols=135  Identities=21%  Similarity=0.289  Sum_probs=92.0

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcCcCcc--ccCCCCCceeEeeEEEeC------------------------------
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVV--RTSDKPGLTQTINFFKLG------------------------------  137 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~--~~s~~~gtt~~~~~~~~~------------------------------  137 (269)
                      ...+.|+++|.+|+|||||+|+|++. ...  .+++.|+|++........                              
T Consensus        63 ~~~~~V~vvG~~n~GKSTLIN~Llg~-~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~  141 (550)
T 2qpt_A           63 DGKPMVLVAGQYSTGKTSFIQYLLEQ-EVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN  141 (550)
T ss_dssp             SSCCEEEEEEBTTSCHHHHHHHHHTS-CCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCT
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCC-ccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence            45689999999999999999999998 443  577778776543221110                              


Q ss_pred             ------------CcEEEEcCCCCCCcchhHHHHHH--HHHHHHHHHhcccccceEEEEEeCCC-CCCcchHHHHHHHHhh
Q 024325          138 ------------TKLCLVDLPGYGFAYAKEEVKDA--WEELVKEYVSTRVSLKRVCLLIDTKW-GVKPRDHELISLMERS  202 (269)
Q Consensus       138 ------------~~~~lvDtpG~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~vl~vid~~~-~~~~~~~~~~~~l~~~  202 (269)
                                  ..+.||||||+...... .+...  +......+..   .+|++++|+|+.. +....+..+++.+...
T Consensus       142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~-~~~~~~~f~~~~~~~l~---~aD~il~VvDa~~~~~~~~~~~~l~~l~~~  217 (550)
T 2qpt_A          142 RFMCAQLPNQVLESISIIDTPGILSGAKQ-RVSRGYDFPAVLRWFAE---RVDLIILLFDAHKLEISDEFSEAIGALRGH  217 (550)
T ss_dssp             TEEEEECCCHHHHHCEEEECCCBCC--------CCSCHHHHHHHHHH---HCSEEEEEEETTSCCCCHHHHHHHHHTTTC
T ss_pred             cceEEeccccccCCEEEEECcCCCCcchh-HHHHHhhHHHHHHHHHH---hCCEEEEEEeCCcCCCCHHHHHHHHHHHhc
Confidence                        36899999998652110 00000  1222223332   3999999999976 4566667777777777


Q ss_pred             CCcEEEEEecCCCCCchHHHHHHHHHH
Q 024325          203 QTKYQVVLTKTDTVFPIDVARRAMQIE  229 (269)
Q Consensus       203 ~~p~iiv~NK~Dl~~~~~~~~~~~~~~  229 (269)
                      +.|+++|+||+|+.+..++......+.
T Consensus       218 ~~pvilVlNK~Dl~~~~el~~~~~~l~  244 (550)
T 2qpt_A          218 EDKIRVVLNKADMVETQQLMRVYGALM  244 (550)
T ss_dssp             GGGEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCccCHHHHHHHHHHhh
Confidence            789999999999998777666555544

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.69  E-value=2.2e-16  Score=149.45  Aligned_cols=113  Identities=24%  Similarity=0.313  Sum_probs=79.1

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCc----cc------cCC------CCCce---eEeeEEEeCCcEEEEcCCCCCCc
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGV----VR------TSD------KPGLT---QTINFFKLGTKLCLVDLPGYGFA  151 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~----~~------~s~------~~gtt---~~~~~~~~~~~~~lvDtpG~~~~  151 (269)
                      ...+|+++|++|+|||||+++|++....    ..      ..+      ..+.|   ....+...+..+.+|||||+.+.
T Consensus         8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f   87 (665)
T 2dy1_A            8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF   87 (665)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred             CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch
Confidence            4568999999999999999999854211    00      000      01222   22233344667999999997431


Q ss_pred             chhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCC
Q 024325          152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  216 (269)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~  216 (269)
                                ......+++   .+|.+++|+|+..+...+...++..+...++|+++|+||+|+.
T Consensus        88 ----------~~~~~~~l~---~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           88 ----------VGEIRGALE---AADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG  139 (665)
T ss_dssp             ----------HHHHHHHHH---HCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred             ----------HHHHHHHHh---hcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh
Confidence                      111122222   3999999999988888888888888888899999999999997

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.69  E-value=6.5e-17  Score=136.56  Aligned_cols=122  Identities=23%  Similarity=0.247  Sum_probs=83.4

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE---EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~---~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      .++|+++|.+|+|||||+|+|++. ....+++++++|.+....   ..+..+.+|||||+.+......  .. ......+
T Consensus        36 ~~~I~lvG~~g~GKSSLin~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~--~~-~~~i~~~  111 (262)
T 3def_A           36 SMTVLVLGKGGVGKSSTVNSLIGE-QVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNH--QA-LELIKGF  111 (262)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTS-CCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECH--HH-HHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC-CCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchH--HH-HHHHHHH
Confidence            468999999999999999999998 556788888887765432   3466899999999865421111  11 1112222


Q ss_pred             HhcccccceEEEEEeCCC-CCCcchHHHHHHHHhh-C----CcEEEEEecCCCCCc
Q 024325          169 VSTRVSLKRVCLLIDTKW-GVKPRDHELISLMERS-Q----TKYQVVLTKTDTVFP  218 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~-~~~~~~~~~~~~l~~~-~----~p~iiv~NK~Dl~~~  218 (269)
                      +. ...+|++++|++... .+...+..+++.+... +    .|+++|+||+|+.++
T Consensus       112 l~-~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~  166 (262)
T 3def_A          112 LV-NRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP  166 (262)
T ss_dssp             TT-TCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred             Hh-cCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence            22 235899999987653 3444555677776653 2    499999999999643

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.69  E-value=3.5e-16  Score=148.77  Aligned_cols=115  Identities=18%  Similarity=0.205  Sum_probs=79.4

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcC-cc---------ccCC------CCCceeEee---EEEeC-------CcEEEEc
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWG-VV---------RTSD------KPGLTQTIN---FFKLG-------TKLCLVD  144 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~-~~---------~~s~------~~gtt~~~~---~~~~~-------~~~~lvD  144 (269)
                      ..++|+++|++|+|||||+++|+.... ..         .+.+      ..|+|....   +...+       ..+.|||
T Consensus         9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD   88 (704)
T 2rdo_7            9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID   88 (704)
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence            457999999999999999999975311 00         0111      234444332   22223       6799999


Q ss_pred             CCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCc
Q 024325          145 LPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP  218 (269)
Q Consensus       145 tpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~  218 (269)
                      |||+.+-          ......++   ..+|.+++|+|+..+...+...++..+...++|+++|+||+|+...
T Consensus        89 TPG~~df----------~~~~~~~l---~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~  149 (704)
T 2rdo_7           89 TPGHVDF----------TIEVERSM---RVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGA  149 (704)
T ss_pred             CCCccch----------HHHHHHHH---HHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccc
Confidence            9998431          11112222   2399999999999887777777777777789999999999999754

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.69  E-value=1.4e-16  Score=134.15  Aligned_cols=167  Identities=17%  Similarity=0.177  Sum_probs=101.1

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHh-----cCcCccccCCCCCc----------------eeEee-----------------
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALT-----RQWGVVRTSDKPGL----------------TQTIN-----------------  132 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~-----~~~~~~~~s~~~gt----------------t~~~~-----------------  132 (269)
                      ..+.++++|.+|+|||||++.|.     +. ++..+...++.                +++..                 
T Consensus        13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~-~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (262)
T 1yrb_A           13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNY-KVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRL   91 (262)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHTTTS-CEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCCHHHHHHHHHHHHHCCC-eEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHH
Confidence            34789999999999999999998     55 45555444431                11100                 


Q ss_pred             ------------EEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHH-H----
Q 024325          133 ------------FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHE-L----  195 (269)
Q Consensus       133 ------------~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~-~----  195 (269)
                                  ....+..+.+|||||......       +..+.......... +++++++|+.......+.. .    
T Consensus        92 ~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~-------~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~  163 (262)
T 1yrb_A           92 MEKFNEYLNKILRLEKENDYVLIDTPGQMETFL-------FHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFA  163 (262)
T ss_dssp             HTTHHHHHHHHHHHHHHCSEEEEECCSSHHHHH-------HSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHhhcCCEEEEeCCCccchhh-------hhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHH
Confidence                        000134799999999733110       01111222233355 8899999986544433321 1    


Q ss_pred             HHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHH------HH------------------HHhcCCCCCCeEEeeCCCCC
Q 024325          196 ISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE------ES------------------LKANNSLVQPVMMVSSKSGA  251 (269)
Q Consensus       196 ~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~------~~------------------~~~~~~~~~~vi~vSa~~g~  251 (269)
                      .......+.|+++|+||+|+....+.......+.      +.                  .... ....+++++||++|+
T Consensus       164 ~~~~~~~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~SA~~~~  242 (262)
T 1yrb_A          164 LLIDLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEV-LPPVRVLYLSAKTRE  242 (262)
T ss_dssp             HHHHHHHTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHH-SCCCCCEECCTTTCT
T ss_pred             HHHhcccCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHh-cCcccceEEEecCcc
Confidence            1223345789999999999987643322222111      01                  1111 123478999999999


Q ss_pred             CHHHHHHHHHHhhhhh
Q 024325          252 GIRSLRTVLSKIARFA  267 (269)
Q Consensus       252 gi~~L~~~i~~~~~~~  267 (269)
                      |+++|+++|.+.+...
T Consensus       243 gi~~l~~~i~~~~~~~  258 (262)
T 1yrb_A          243 GFEDLETLAYEHYCTC  258 (262)
T ss_dssp             THHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhccc
Confidence            9999999999887653

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.68  E-value=2.9e-16  Score=126.75  Aligned_cols=156  Identities=15%  Similarity=0.112  Sum_probs=93.2

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE-eC--CcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-LG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~-~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      .++|+++|++|||||||+|+|++........+..++........ .+  ..+.+|||||....          ..+...+
T Consensus         5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~----------~~~~~~~   74 (199)
T 2f9l_A            5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERY----------RRITSAY   74 (199)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGT----------TCCCHHH
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhh----------hhhhHHH
Confidence            36899999999999999999998731111112222222222222 22  35778999996321          1111222


Q ss_pred             HhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEE
Q 024325          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM  244 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~  244 (269)
                      ..   .++++++|+|......... ..++..+..   .+.|+++|+||+|+........  .........   ...+++.
T Consensus        75 ~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~--~~a~~l~~~---~~~~~~d  146 (199)
T 2f9l_A           75 YR---GAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPT--DEARAFAEK---NNLSFIE  146 (199)
T ss_dssp             HT---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCH--HHHHHHHHH---TTCEEEE
T ss_pred             Hh---cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCH--HHHHHHHHH---cCCeEEE
Confidence            22   3789999999875322222 233333333   3679999999999964221100  011111111   2467899


Q ss_pred             eeCCCCCCHHHHHHHHHHhhh
Q 024325          245 VSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       245 vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      +||+++.|+++++++|.+.+.
T Consensus       147 ~Sal~~~~i~~l~~~l~~~~~  167 (199)
T 2f9l_A          147 TSALDSTNVEEAFKNILTEIY  167 (199)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999987763

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.68  E-value=1.9e-16  Score=150.48  Aligned_cols=115  Identities=21%  Similarity=0.261  Sum_probs=77.1

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcC-c---cc------cCC------CCCceeEee---EEEeCCcEEEEcCCCCCCc
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWG-V---VR------TSD------KPGLTQTIN---FFKLGTKLCLVDLPGYGFA  151 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~-~---~~------~s~------~~gtt~~~~---~~~~~~~~~lvDtpG~~~~  151 (269)
                      ..++|+++|++|+|||||+|+|+.... .   ..      +.+      ..++|....   +...+..+.+|||||+.+-
T Consensus        11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df   90 (691)
T 1dar_A           11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDF   90 (691)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTC
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccch
Confidence            346899999999999999999984210 0   00      111      233443332   2233678999999998431


Q ss_pred             chhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCc
Q 024325          152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP  218 (269)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~  218 (269)
                                ......++.   .+|.+++|+|+..+...+....+..+...++|+++|+||+|+...
T Consensus        91 ----------~~~~~~~l~---~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~  144 (691)
T 1dar_A           91 ----------TIEVERSMR---VLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGA  144 (691)
T ss_dssp             ----------HHHHHHHHH---HCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred             ----------HHHHHHHHH---HCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccC
Confidence                      111122222   399999999999888888778888888889999999999999864

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.68  E-value=2.4e-16  Score=126.26  Aligned_cols=131  Identities=20%  Similarity=0.238  Sum_probs=77.5

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcCcC-ccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQWG-VVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~-~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      ...++|+++|.+|+|||||+|+|++... ....+..++++.+.    .+..+.+|||||......      .+.....  
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~l~Dt~G~~~~~~------~~~~~~~--  113 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY----DGSGVTLVDFPGHVKLRY------KLSDYLK--  113 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC----CCTTCSEEEETTCCBSSC------CHHHHHH--
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee----cCCeEEEEECCCCchHHH------HHHHHHH--
Confidence            4567999999999999999999998731 11123333344332    466799999999854311      1111111  


Q ss_pred             HhcccccceEEEEEeCCCCCCcch---HHHHHHHHh------hCCcEEEEEecCCCCCchHHHHHHHHHHHHHH
Q 024325          169 VSTRVSLKRVCLLIDTKWGVKPRD---HELISLMER------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLK  233 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~~~~~~~---~~~~~~l~~------~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~  233 (269)
                       .....+|++++|+|+........   ..+...+..      .+.|+++|+||+|+..........+.+.+.+.
T Consensus       114 -~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~l~  186 (193)
T 2ged_A          114 -TRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQ  186 (193)
T ss_dssp             -HHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHH
T ss_pred             -hhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHHHHHHH
Confidence             22234899999999872111111   122222221      37899999999999987666666655554443

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.68  E-value=2.9e-16  Score=145.28  Aligned_cols=124  Identities=19%  Similarity=0.244  Sum_probs=85.6

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCc----c----------ccCC------CCCce---eEeeEEEeCCcEEEEcCCCCC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGV----V----------RTSD------KPGLT---QTINFFKLGTKLCLVDLPGYG  149 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~----~----------~~s~------~~gtt---~~~~~~~~~~~~~lvDtpG~~  149 (269)
                      .+|+|+|+.++|||||..+|+-....    .          .+.+      ..|.|   .-+.+.+.+..++|+||||+.
T Consensus        32 RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHv  111 (548)
T 3vqt_A           32 RTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQ  111 (548)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCGG
T ss_pred             ceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcH
Confidence            38999999999999999998632110    0          0111      11111   112344567889999999984


Q ss_pred             CcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHH
Q 024325          150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE  229 (269)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~  229 (269)
                      +             +..+..+.+..+|.+++|+|+..+...+...+++.+...++|.++++||+|+.... .......++
T Consensus       112 D-------------F~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ad-~~~~~~~i~  177 (548)
T 3vqt_A          112 D-------------FSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREALH-PLDVMADIE  177 (548)
T ss_dssp             G-------------CSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCCC-HHHHHHHHH
T ss_pred             H-------------HHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhcc-hhHhhhhhh
Confidence            3             22233334445999999999999999999999999999999999999999997542 333333443


Q ss_pred             H
Q 024325          230 E  230 (269)
Q Consensus       230 ~  230 (269)
                      +
T Consensus       178 ~  178 (548)
T 3vqt_A          178 Q  178 (548)
T ss_dssp             H
T ss_pred             h
Confidence            3

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.65  E-value=3.2e-16  Score=140.15  Aligned_cols=170  Identities=18%  Similarity=0.247  Sum_probs=87.7

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccC------CCCCcee-Eee-EE----EeCCcEEEEcCCCCCCcchh----H
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTS------DKPGLTQ-TIN-FF----KLGTKLCLVDLPGYGFAYAK----E  155 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s------~~~gtt~-~~~-~~----~~~~~~~lvDtpG~~~~~~~----~  155 (269)
                      .+.|+++|++|+|||||+|.|++... ...+      ..+.++. +.. +.    .....+.+|||||++.....    .
T Consensus        31 sf~I~lvG~sGaGKSTLln~L~g~~~-~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~  109 (418)
T 2qag_C           31 EFTLMVVGESGLGKSTLINSLFLTDL-YSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ  109 (418)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHTTCCC-CCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred             CEEEEEECCCCCcHHHHHHHHhCCCC-CCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence            36799999999999999999998732 1111      0111221 111 10    11235889999999754211    1


Q ss_pred             HHHHHHHHHHHHHHhc--------c--cccceEEEEEeCC-CCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHH
Q 024325          156 EVKDAWEELVKEYVST--------R--VSLKRVCLLIDTK-WGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARR  224 (269)
Q Consensus       156 ~~~~~~~~~~~~~~~~--------~--~~~d~vl~vid~~-~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~  224 (269)
                      .+.+........|+..        .  ..++++++++++. .++...+..++..+.. ++|+|+|+||+|+..+.++...
T Consensus       110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-~v~iIlVinK~Dll~~~ev~~~  188 (418)
T 2qag_C          110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTPEECQQF  188 (418)
T ss_dssp             HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-TSEEEEEEESTTSSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-cCcEEEEEEcccCccHHHHHHH
Confidence            1111111122223211        1  2245577777765 5777777778887764 7999999999999987776655


Q ss_pred             HHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325          225 AMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       225 ~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      ...+.+.+...   +.+++.+||+++.++++++..|...+.+
T Consensus       189 k~~i~~~~~~~---~i~~~~~sa~~~~~v~~~~~~l~~~iPf  227 (418)
T 2qag_C          189 KKQIMKEIQEH---KIKIYEFPETDDEEENKLVKKIKDRLPL  227 (418)
T ss_dssp             HHHHHHHHHHH---TCCCCCCC-----------------CCE
T ss_pred             HHHHHHHHHHc---CCeEEeCCCCCCcCHHHHHHHHHhhCCc
Confidence            55565555443   4778999999999999988888776554

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.65  E-value=3.7e-16  Score=136.49  Aligned_cols=155  Identities=18%  Similarity=0.168  Sum_probs=93.2

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcC-----cCccccCCCCCce-------------------------------------
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQ-----WGVVRTSDKPGLT-------------------------------------  128 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~-----~~~~~~s~~~gtt-------------------------------------  128 (269)
                      ....++++|++|||||||+|.|.+.     ..+...+..+.++                                     
T Consensus        54 ~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~t  133 (337)
T 2qm8_A           54 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVA  133 (337)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccchH
Confidence            4568999999999999999999842     1233222222211                                     


Q ss_pred             eEee-----EEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhC
Q 024325          129 QTIN-----FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ  203 (269)
Q Consensus       129 ~~~~-----~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~  203 (269)
                      +++.     +...+..+.|+||||++.+.  .       .+       ...+|.+++|+|+..+....  .+...+  ..
T Consensus       134 r~~~e~~~~~~~~~~~~iliDT~Gi~~~~--~-------~v-------~~~~d~vl~v~d~~~~~~~~--~i~~~i--~~  193 (337)
T 2qm8_A          134 AKTRETMLLCEAAGFDVILVETVGVGQSE--T-------AV-------ADLTDFFLVLMLPGAGDELQ--GIKKGI--FE  193 (337)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEEECSSSSCH--H-------HH-------HTTSSEEEEEECSCC--------CCTTH--HH
T ss_pred             HHHHHHHHHHhcCCCCEEEEECCCCCcch--h-------hH-------HhhCCEEEEEEcCCCcccHH--HHHHHH--hc
Confidence            1110     00136789999999997641  1       11       13489999999976331100  000001  12


Q ss_pred             CcEEEEEecCCCCCchHH-HHHHHHHHHHHHhcC----CCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          204 TKYQVVLTKTDTVFPIDV-ARRAMQIEESLKANN----SLVQPVMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       204 ~p~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~----~~~~~vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      .+.++|+||+|+...... ....+.+...+....    .+..+++++||++|.|+++|++.|.+...
T Consensus       194 ~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          194 LADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             cccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            467888999998654332 222333333222121    11468999999999999999999988764

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.65  E-value=1.9e-15  Score=121.38  Aligned_cols=153  Identities=16%  Similarity=0.118  Sum_probs=92.0

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe--eEEE-eC--CcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFK-LG--TKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~--~~~~-~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      .++|+++|++|||||||+|+|++...  .....|.++.+.  .... .+  ..+.+|||||.....          .+..
T Consensus        29 ~~kv~lvG~~g~GKSTLl~~l~~~~~--~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~----------~~~~   96 (191)
T 1oix_A           29 LFKVVLIGDSGVGKSNLLSRFTRNEF--NLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYR----------AITS   96 (191)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCC--CCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSS----------CCCH
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCCC--CCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchh----------hhhH
Confidence            46899999999999999999998732  122223222222  1222 23  245679999975321          1112


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  242 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  242 (269)
                      .+..   .++.+++|+|......... ..++..+..   ...|+++|+||+|+.......  ..........   ...++
T Consensus        97 ~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~--~~~a~~l~~~---~~~~~  168 (191)
T 1oix_A           97 AYYR---GAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVP--TDEARAFAEK---NGLSF  168 (191)
T ss_dssp             HHHT---TCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC--HHHHHHHHHH---TTCEE
T ss_pred             HHhh---cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccC--HHHHHHHHHH---cCCEE
Confidence            2222   2788999999764321111 123333332   357899999999986421110  0111111111   24678


Q ss_pred             EEeeCCCCCCHHHHHHHHHHhh
Q 024325          243 MMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       243 i~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      +.+||+++.|+++++++|.+.+
T Consensus       169 ld~Sald~~~v~~l~~~l~~~i  190 (191)
T 1oix_A          169 IETSALDSTNVEAAFQTILTEI  190 (191)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHHHHHHh
Confidence            9999999999999999998754

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.64  E-value=2.2e-15  Score=129.86  Aligned_cols=159  Identities=12%  Similarity=0.063  Sum_probs=95.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE--EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhc
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF--KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST  171 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~--~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~  171 (269)
                      +|+++|..|+|||||++++.+... .......+.|-...+.  .....+.+|||||......+     .|  ....|++.
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~-~~~~~~~~~Tig~~~~~v~~~v~LqIWDTAGQErf~~~-----~l--~~~~yyr~   72 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQ-PLDTLYLESTSNPSLEHFSTLIDLAVMELPGQLNYFEP-----SY--DSERLFKS   72 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCC-SGGGTTCCCCCSCCCEEECSSSCEEEEECCSCSSSCCC-----SH--HHHHHHTT
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCC-CCccceecCeeeeeeEEEccEEEEEEEECCCchhccch-----hh--hhhhhccC
Confidence            489999999999999999887521 1111111222222221  23467999999998542100     00  12344443


Q ss_pred             ccccceEEEEEeCCCCCCcchHHHHHHH---Hh--hCCcEEEEEecCCCCCchHHHHHHHHHHHH-HHhcCC-----CCC
Q 024325          172 RVSLKRVCLLIDTKWGVKPRDHELISLM---ER--SQTKYQVVLTKTDTVFPIDVARRAMQIEES-LKANNS-----LVQ  240 (269)
Q Consensus       172 ~~~~d~vl~vid~~~~~~~~~~~~~~~l---~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~-~~~~~~-----~~~  240 (269)
                         ++++++|+|....+...-..+.+++   ..  .++|+++|+||+|+.++.+.....+.+... ...+..     ...
T Consensus        73 ---a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i  149 (331)
T 3r7w_B           73 ---VGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQV  149 (331)
T ss_dssp             ---CSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCE
T ss_pred             ---CCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCc
Confidence               9999999999865222222332223   22  368999999999998765432222222221 112211     356


Q ss_pred             CeEEeeCCCCCCHHHHHHHHHHhh
Q 024325          241 PVMMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       241 ~vi~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      +++.+||++ .+|.+.+..|.+.+
T Consensus       150 ~f~eTSAkd-~nV~eAFs~iv~~l  172 (331)
T 3r7w_B          150 SFYLTSIFD-HSIYEAFSRIVQKL  172 (331)
T ss_dssp             EEECCCSSS-SHHHHHHHHHHTTS
T ss_pred             eEEEeccCC-CcHHHHHHHHHHHH
Confidence            789999998 58999999887654

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.63  E-value=1.9e-15  Score=130.05  Aligned_cols=167  Identities=17%  Similarity=0.224  Sum_probs=84.6

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCC-------Cce-eEe-eEE----EeCCcEEEEcCCCCCCcchh----
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-------GLT-QTI-NFF----KLGTKLCLVDLPGYGFAYAK----  154 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~-------gtt-~~~-~~~----~~~~~~~lvDtpG~~~~~~~----  154 (269)
                      .++|+++|++|+|||||+|+|++. .....+..+       .+. ... .+.    .....+.+|||||++.....    
T Consensus        18 ~~~I~lvG~nG~GKSTLl~~L~g~-~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~   96 (301)
T 2qnr_A           18 EFTLMVVGESGLGKSTLINSLFLT-DLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF   96 (301)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHHC-------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCC-CccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence            468999999999999999999875 222222111       111 111 111    11346899999998543110    


Q ss_pred             HHHHHHHHHHHHHHHhccc----------ccceEEEEEeCC-CCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHH
Q 024325          155 EEVKDAWEELVKEYVSTRV----------SLKRVCLLIDTK-WGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVAR  223 (269)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~----------~~d~vl~vid~~-~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~  223 (269)
                      ..+.+........|+....          .++++++++++. .++...+.+++..+. ...|+++|+||+|+....+...
T Consensus        97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~-~~~~iilV~~K~Dl~~~~e~~~  175 (301)
T 2qnr_A           97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLTLKERER  175 (301)
T ss_dssp             TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT-TTSCEEEEECCGGGSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH-hcCCEEEEEEeCCCCCHHHHHH
Confidence            1111111112223333322          134466666654 347776665655553 3579999999999987655443


Q ss_pred             HHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325          224 RAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      ..+.+.+.....   ..+++++||++| |+++++.++.+.+
T Consensus       176 ~~~~~~~~~~~~---~~~~~e~Sa~~~-~v~e~f~~l~~~i  212 (301)
T 2qnr_A          176 LKKRILDEIEEH---NIKIYHLPDAES-DEDEDFKEQTRLL  212 (301)
T ss_dssp             HHHHHHHHHHHT---TCCCCCCC----------CHHHHHHH
T ss_pred             HHHHHHHHHHHc---CCeEEecCCccc-cccHHHHHHHHHh
Confidence            334444444433   468899999999 9999998887755

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.63  E-value=2.4e-16  Score=148.57  Aligned_cols=159  Identities=23%  Similarity=0.260  Sum_probs=109.8

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcC----cccc------CCCC------CceeE---eeEEEeCCcEEEEcCCCCCCcch
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWG----VVRT------SDKP------GLTQT---INFFKLGTKLCLVDLPGYGFAYA  153 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~----~~~~------s~~~------gtt~~---~~~~~~~~~~~lvDtpG~~~~~~  153 (269)
                      .+|+|+|+.++|||||..+|+....    ...+      .+..      |.|-.   +.+.+.+..++|+||||+.+   
T Consensus         3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~D---   79 (638)
T 3j25_A            3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMD---   79 (638)
T ss_dssp             CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSS---
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHH---
Confidence            4799999999999999999863211    0011      1110      12211   23344578899999999854   


Q ss_pred             hHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHH
Q 024325          154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLK  233 (269)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~  233 (269)
                                +..+..+.+..+|.+++|+|+..+...+...+++.+...++|.++++||+|+...+ .......+++.+.
T Consensus        80 ----------F~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a~-~~~~~~~i~~~l~  148 (638)
T 3j25_A           80 ----------FLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGID-LSTVYQDIKEKLS  148 (638)
T ss_dssp             ----------THHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSCC-SHHHHHHHHHTTC
T ss_pred             ----------HHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccCC-HHHHHHHHHHHhC
Confidence                      23344445556999999999999999999999999999999999999999987532 1111111111000


Q ss_pred             ----------------------------------------------------------hcCCCCCCeEEeeCCCCCCHHH
Q 024325          234 ----------------------------------------------------------ANNSLVQPVMMVSSKSGAGIRS  255 (269)
Q Consensus       234 ----------------------------------------------------------~~~~~~~~vi~vSa~~g~gi~~  255 (269)
                                                                                .......|++..||+++.|++.
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~  228 (638)
T 3j25_A          149 AEIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDN  228 (638)
T ss_dssp             CCCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHH
T ss_pred             CCccccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchh
Confidence                                                                      0011247899999999999999


Q ss_pred             HHHHHHHhhh
Q 024325          256 LRTVLSKIAR  265 (269)
Q Consensus       256 L~~~i~~~~~  265 (269)
                      |++.|.+.+.
T Consensus       229 LLd~i~~~~p  238 (638)
T 3j25_A          229 LIEVITNKFY  238 (638)
T ss_dssp             HHHHHHHSCC
T ss_pred             Hhhhhhcccc
Confidence            9999987653

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.62  E-value=5e-16  Score=127.30  Aligned_cols=150  Identities=11%  Similarity=0.070  Sum_probs=92.2

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCc----CccccCCCCCceeEe----------eE-------------------EEeC
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQW----GVVRTSDKPGLTQTI----------NF-------------------FKLG  137 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~----~~~~~s~~~gtt~~~----------~~-------------------~~~~  137 (269)
                      ..+.|+++|++|+|||||+|+|++..    .++.+...++++.|.          ..                   ...+
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD  108 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence            35789999999999999999998641    223333444432111          00                   0113


Q ss_pred             CcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCC
Q 024325          138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF  217 (269)
Q Consensus       138 ~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~  217 (269)
                      ..+.+|||+|....  +            .++.  ...+.+++|+|+..+..    .........+.|+++|+||+|+.+
T Consensus       109 ~d~iiidt~G~~~~--~------------~~~~--~~~~~~i~vvd~~~~~~----~~~~~~~~~~~~~iiv~NK~Dl~~  168 (221)
T 2wsm_A          109 CDLLLIENVGNLIC--P------------VDFD--LGENYRVVMVSVTEGDD----VVEKHPEIFRVADLIVINKVALAE  168 (221)
T ss_dssp             CSEEEEEEEEBSSG--G------------GGCC--CSCSEEEEEEEGGGCTT----HHHHCHHHHHTCSEEEEECGGGHH
T ss_pred             CCEEEEeCCCCCCC--C------------chhc--cccCcEEEEEeCCCcch----hhhhhhhhhhcCCEEEEecccCCc
Confidence            45778888884111  0            0000  12577889999875422    122222334689999999999864


Q ss_pred             ch--HHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          218 PI--DVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       218 ~~--~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      ..  +.......+.    .. ....+++++||++|.|+++|+++|.+.+.
T Consensus       169 ~~~~~~~~~~~~~~----~~-~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~  213 (221)
T 2wsm_A          169 AVGADVEKMKADAK----LI-NPRAKIIEMDLKTGKGFEEWIDFLRGILN  213 (221)
T ss_dssp             HHTCCHHHHHHHHH----HH-CTTSEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred             chhhHHHHHHHHHH----Hh-CCCCeEEEeecCCCCCHHHHHHHHHHHHH
Confidence            31  2333333322    22 12468999999999999999999988764

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.61  E-value=2.3e-15  Score=131.89  Aligned_cols=86  Identities=24%  Similarity=0.287  Sum_probs=57.1

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE--Ee------------------CCcEEEEcCCCCCCcc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF--KL------------------GTKLCLVDLPGYGFAY  152 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~--~~------------------~~~~~lvDtpG~~~~~  152 (269)
                      .+|+++|.||+|||||+|+|++. . ..++++|++|.+.+..  ..                  +..+.+|||||+....
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~-~-~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a   80 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKA-G-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA   80 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHT-C-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCC-C-CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence            57999999999999999999998 3 6788999998875421  11                  1469999999986542


Q ss_pred             hhHHHHHHHHHHHHHHHhcccccceEEEEEeCCC
Q 024325          153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW  186 (269)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~  186 (269)
                      ...      ..+...|+.....+|++++|+|++.
T Consensus        81 ~~~------~gl~~~fl~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           81 SKG------EGLGNKFLANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             HHH------GGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             ccc------chHHHHHHHHHHhcCeEEEEEecCC
Confidence            110      1122233333445999999999975

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.60  E-value=1.4e-15  Score=133.91  Aligned_cols=86  Identities=24%  Similarity=0.271  Sum_probs=60.0

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE------------------------eCCcEEEEcCCCC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK------------------------LGTKLCLVDLPGY  148 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~------------------------~~~~~~lvDtpG~  148 (269)
                      ++|+++|.||+|||||+|+|++. . ..++++|++|.+.+...                        .+..+.+|||||+
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~-~-~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl   79 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRA-N-ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL   79 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHH-H-TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC-C-CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence            46999999999999999999987 3 56788888876643221                        2346999999998


Q ss_pred             CCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCC
Q 024325          149 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW  186 (269)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~  186 (269)
                      .......      ..+...++.....+|++++|+|+..
T Consensus        80 ~~~a~~~------~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           80 VKGAHKG------EGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCCCCSS------SCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             ccccccc------chHHHHHHHHHHhCCEEEEEEECCC
Confidence            6542211      0111223333345999999999975

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.59  E-value=1.4e-17  Score=147.15  Aligned_cols=136  Identities=16%  Similarity=0.222  Sum_probs=89.5

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCc-----CccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchh-HHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK-EEVKDAWEELVK  166 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~-----~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~-~~~~~~~~~~~~  166 (269)
                      .+|+++|.+|+|||||+|+|++..     ....+++.||||++......+..+.++||||+...... +.+.   .....
T Consensus       161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~---~~~l~  237 (368)
T 3h2y_A          161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGIINHHQMAHYVG---KQSLK  237 (368)
T ss_dssp             SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSSCEEEECCCBCCTTSGGGGSC---HHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCCeEEEeCCCcCcHHHHHHHhh---HHHHH
Confidence            479999999999999999999861     24557899999999988777777999999999764211 1111   11111


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHH
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESL  232 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~  232 (269)
                      .+ ......+.+++++++...........++.+...+.|+++++||+|.+...+..+..+.+++.+
T Consensus       238 ~~-~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~~~~~~~~~~~~~~~~  302 (368)
T 3h2y_A          238 LI-TPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIHRTKLEKADELYKNHA  302 (368)
T ss_dssp             HH-SCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEHHHHHHHHHHHB
T ss_pred             Hh-ccccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCccccccccHHHHHHHHHHHh
Confidence            22 223458889999988432211222223334445789999999999998877776666665543

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.58  E-value=1.8e-17  Score=146.55  Aligned_cols=152  Identities=16%  Similarity=0.152  Sum_probs=100.0

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC----cCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcch-hHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ----WGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYA-KEEVKDAWEELVKE  167 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~----~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~-~~~~~~~~~~~~~~  167 (269)
                      .+|+++|.+|+|||||+|+|++.    .....+++.||||++......+..+.++||||+..... .+.+.   ......
T Consensus       163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~---~~~l~~  239 (369)
T 3ec1_A          163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPGIINHHQMAHFVD---ARDLKI  239 (369)
T ss_dssp             SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTTCEEEECCSCCCCSSGGGGSC---TTTHHH
T ss_pred             CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCCeEEEeCCCcCcHHHHHHHHh---HHHHHH
Confidence            47999999999999999999986    12367889999999998887777899999999975421 11110   011112


Q ss_pred             HHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeC
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS  247 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa  247 (269)
                      +. ....++.+++++++...........++.+...+.|+++++||+|.+...+.....+.+++.+      +..+.+.++
T Consensus       240 ~~-~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~------g~~l~p~~~  312 (369)
T 3ec1_A          240 IT-PKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTVHRTKLEKADSLYANQL------GELLSPPSK  312 (369)
T ss_dssp             HS-CSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEGGGHHHHHHHHB------TTTBCSSCG
T ss_pred             Hh-cccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCcccccccHHHHHHHHHHhc------CCccCCCCc
Confidence            21 22458999999998532111122223334445789999999999987766665555555443      234555555


Q ss_pred             CCCCCHH
Q 024325          248 KSGAGIR  254 (269)
Q Consensus       248 ~~g~gi~  254 (269)
                      ....++.
T Consensus       313 ~~~~~~~  319 (369)
T 3ec1_A          313 RYAAEFP  319 (369)
T ss_dssp             GGTTTCC
T ss_pred             hhhhhcc
Confidence            5555543

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.57  E-value=2e-15  Score=146.19  Aligned_cols=148  Identities=18%  Similarity=0.213  Sum_probs=94.2

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCC---------------CCCceeEe---eEEEe----------------C
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD---------------KPGLTQTI---NFFKL----------------G  137 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~---------------~~gtt~~~---~~~~~----------------~  137 (269)
                      .++|+++|++|+|||||+|+|+.... ...+.               ..|.|-..   .+...                +
T Consensus        19 ~rnI~IiG~~~~GKTTL~~~Ll~~~g-~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~   97 (842)
T 1n0u_A           19 VRNMSVIAHVDHGKSTLTDSLVQRAG-IISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS   97 (842)
T ss_dssp             EEEEEEECCGGGTHHHHHHHHHHHHB-CCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHhcC-CcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence            45899999999999999999987521 11111               12223221   11111                4


Q ss_pred             CcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCC
Q 024325          138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF  217 (269)
Q Consensus       138 ~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~  217 (269)
                      ..+.+|||||+.+-.          .....++   ..+|++++|+|+..+...++..++..+...++|+++|+||+|+..
T Consensus        98 ~~i~liDTPG~~df~----------~~~~~~l---~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~~  164 (842)
T 1n0u_A           98 FLINLIDSPGHVDFS----------SEVTAAL---RVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRAL  164 (842)
T ss_dssp             EEEEEECCCCCCSSC----------HHHHHHH---HTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHH
T ss_pred             ceEEEEECcCchhhH----------HHHHHHH---HhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcch
Confidence            568999999986521          1112222   239999999999988888877777777777899999999999862


Q ss_pred             ------chH----HHHHHHHHHHHHHhcC----------CCCCCeEEeeCCCCCCH
Q 024325          218 ------PID----VARRAMQIEESLKANN----------SLVQPVMMVSSKSGAGI  253 (269)
Q Consensus       218 ------~~~----~~~~~~~~~~~~~~~~----------~~~~~vi~vSa~~g~gi  253 (269)
                            +.+    .......++..+..+.          ....++...|+++|+|+
T Consensus       165 ~e~~~~~~e~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~~  220 (842)
T 1n0u_A          165 LELQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAF  220 (842)
T ss_dssp             HTSCCCHHHHHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEE
T ss_pred             hhhccCHHHHHHHHHHHHHHHHHHHhhccccccCceeeceEEeeeEEeeccccccc
Confidence                  222    2333344444433211          11235788999998763

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.54  E-value=3.7e-14  Score=135.29  Aligned_cols=115  Identities=18%  Similarity=0.201  Sum_probs=79.3

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCc-c---cc------CC------CCCceeE---eeEEEe-------CCcEEEEc
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGV-V---RT------SD------KPGLTQT---INFFKL-------GTKLCLVD  144 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~-~---~~------s~------~~gtt~~---~~~~~~-------~~~~~lvD  144 (269)
                      ...+|+|+|+.++|||||..+|+..... .   .+      .+      ..|.|-.   +.+.+.       +..++|+|
T Consensus        12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID   91 (709)
T 4fn5_A           12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID   91 (709)
T ss_dssp             GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred             HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence            3468999999999999999998743110 0   11      11      1122211   122221       35699999


Q ss_pred             CCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCc
Q 024325          145 LPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP  218 (269)
Q Consensus       145 tpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~  218 (269)
                      |||+.+-             ..+..+.+..+|.+++|+|+..+...+...+++.+...++|.++++||+|+...
T Consensus        92 TPGHvDF-------------~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a  152 (709)
T 4fn5_A           92 TPGHVDF-------------TIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGA  152 (709)
T ss_dssp             CCSCTTC-------------HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTC
T ss_pred             CCCCccc-------------HHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCc
Confidence            9998542             222223333499999999999999999999999999999999999999998643

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.52  E-value=6.5e-14  Score=124.92  Aligned_cols=152  Identities=18%  Similarity=0.266  Sum_probs=93.4

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCcc---ccCCCCCceeEee-EEEeC----CcEEEEcCCCCCCcchh----HH--
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVV---RTSDKPGLTQTIN-FFKLG----TKLCLVDLPGYGFAYAK----EE--  156 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~---~~s~~~gtt~~~~-~~~~~----~~~~lvDtpG~~~~~~~----~~--  156 (269)
                      ..|+++++|++|||||||+|.|+|.. +.   .....++.+.... +....    ..++++|++|++.....    ..  
T Consensus        41 ei~~vaLvG~nGaGKSTLln~L~G~~-l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~  119 (427)
T 2qag_B           41 FCFNILCVGETGLGKSTLMDTLFNTK-FEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIV  119 (427)
T ss_dssp             CEEEEEEECSTTSSSHHHHHHHHTSC-C-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCcc-ccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHH
Confidence            34569999999999999999999972 21   1112344444422 22211    26899999999764221    11  


Q ss_pred             --HHHHHHHHHHHHHh------cccc--cc-eEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHH
Q 024325          157 --VKDAWEELVKEYVS------TRVS--LK-RVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRA  225 (269)
Q Consensus       157 --~~~~~~~~~~~~~~------~~~~--~d-~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~  225 (269)
                        +...+..++..+..      ....  +| ++++|+|+.+++...|.++++.+. .+.|+|+|+||+|.+.+.+.....
T Consensus       120 ~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~vI~Vi~KtD~Lt~~E~~~l~  198 (427)
T 2qag_B          120 EFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVNIIPIIAKADAISKSELTKFK  198 (427)
T ss_dssp             HHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSEEEEEESCGGGSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCCEEEEEcchhccchHHHHHHH
Confidence              12233333333321      1112  23 366778888888888988888887 689999999999999988877766


Q ss_pred             HHHHHHHHhcCCCCCCeEEeeC
Q 024325          226 MQIEESLKANNSLVQPVMMVSS  247 (269)
Q Consensus       226 ~~~~~~~~~~~~~~~~vi~vSa  247 (269)
                      ..+.+.+..   .+.+++++|.
T Consensus       199 ~~I~~~L~~---~gi~I~~is~  217 (427)
T 2qag_B          199 IKITSELVS---NGVQIYQFPT  217 (427)
T ss_dssp             HHHHHHHBT---TBCCCCCCC-
T ss_pred             HHHHHHHHH---cCCcEEecCC
Confidence            666654433   3466667764

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.47  E-value=3.2e-13  Score=110.80  Aligned_cols=60  Identities=18%  Similarity=0.196  Sum_probs=42.0

Q ss_pred             hCCcEEEEEecCCCCCch--HHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325          202 SQTKYQVVLTKTDTVFPI--DVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       202 ~~~p~iiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      ...|.++|+||+|+.+..  ........+    ... ....+++++||++|+|+++|+++|.+.+..
T Consensus       163 ~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~----~~~-~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          163 MKTADLIVINKIDLADAVGADIKKMENDA----KRI-NPDAEVVLLSLKTMEGFDKVLEFIEKSVKE  224 (226)
T ss_dssp             HTTCSEEEEECGGGHHHHTCCHHHHHHHH----HHH-CTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             hhcCCEEEEeccccCchhHHHHHHHHHHH----HHh-CCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence            367899999999986431  222222222    221 124689999999999999999999887654

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.44  E-value=9.1e-13  Score=111.46  Aligned_cols=141  Identities=23%  Similarity=0.381  Sum_probs=87.9

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccC-------CCCCcee--EeeEE----EeCCcEEEEcCCCCCCcchh----H
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTS-------DKPGLTQ--TINFF----KLGTKLCLVDLPGYGFAYAK----E  155 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s-------~~~gtt~--~~~~~----~~~~~~~lvDtpG~~~~~~~----~  155 (269)
                      ++++++|++|||||||+|.|+|.... ..+       +.+.++.  .+.+.    .....++++|+||++.....    .
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g~~~~-~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFKSQVS-RKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHHC-------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCC-CCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            57999999999999999999986311 111       1122211  11111    12346899999999764221    1


Q ss_pred             HHHHH----HHHHHHHHHhcc-------cccceEEEEEeCC-CCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHH
Q 024325          156 EVKDA----WEELVKEYVSTR-------VSLKRVCLLIDTK-WGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVAR  223 (269)
Q Consensus       156 ~~~~~----~~~~~~~~~~~~-------~~~d~vl~vid~~-~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~  223 (269)
                      .+...    +.......++..       .-++++++++|.. +++.+.+.++++.+... .++++|+||+|.+...+...
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~D~lt~~e~~~  160 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKADTMTLEEKSE  160 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTGGGSCHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEeccccCCHHHHHH
Confidence            12211    111111111111       1257788888854 78888899999999876 99999999999999888877


Q ss_pred             HHHHHHHHHHhc
Q 024325          224 RAMQIEESLKAN  235 (269)
Q Consensus       224 ~~~~~~~~~~~~  235 (269)
                      ....+.+.+...
T Consensus       161 ~k~~i~~~l~~~  172 (270)
T 3sop_A          161 FKQRVRKELEVN  172 (270)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHc
Confidence            777777766654

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.42  E-value=3e-12  Score=114.15  Aligned_cols=166  Identities=17%  Similarity=0.191  Sum_probs=99.4

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCcc---ccCCCCCceeEeeEEEe--CCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVV---RTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~---~~s~~~gtt~~~~~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      ...++++|++|||||||+|.|+|.....   ...+...+|+....+..  ...+.++|+||++...  ..+.    .+..
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~--~~~~----~~L~  142 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTN--FPPD----TYLE  142 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSS--CCHH----HHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchH--HHHH----HHHH
Confidence            3589999999999999999999952111   11111123332222222  2468999999986431  1111    2222


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCC---------chHHHHHHHHHHHHH----H
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF---------PIDVARRAMQIEESL----K  233 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~---------~~~~~~~~~~~~~~~----~  233 (269)
                      .+  .+...+..++ ++... ...++..+...+...++|+++|+||.|++-         +.......+.+.+..    .
T Consensus       143 ~~--~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~  218 (413)
T 1tq4_A          143 KM--KFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFR  218 (413)
T ss_dssp             HT--TGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             Hc--CCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHH
Confidence            11  1222455554 77653 466667788888888999999999999861         112233333343332    1


Q ss_pred             hcCCCCCCeEEeeC--CCCCCHHHHHHHHHHhhhhh
Q 024325          234 ANNSLVQPVMMVSS--KSGAGIRSLRTVLSKIARFA  267 (269)
Q Consensus       234 ~~~~~~~~vi~vSa--~~g~gi~~L~~~i~~~~~~~  267 (269)
                      ........+|++|+  ..+.|+++|.+.|.+.+...
T Consensus       219 ~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg  254 (413)
T 1tq4_A          219 ENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY  254 (413)
T ss_dssp             HTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred             hcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence            21111347899999  66778999999998877543

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=99.38  E-value=1.8e-12  Score=118.35  Aligned_cols=159  Identities=14%  Similarity=0.122  Sum_probs=92.6

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHh------cCcCccccCCCCC-----------------------ceeEe--------eE
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALT------RQWGVVRTSDKPG-----------------------LTQTI--------NF  133 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~------~~~~~~~~s~~~g-----------------------tt~~~--------~~  133 (269)
                      ....|+++|.+|+||||+++.|.      |. ++..++..+.                       ++.+.        ..
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~-kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~  178 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGW-KTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK  178 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCC-eEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence            45689999999999999999998      54 4444333110                       01110        00


Q ss_pred             E-EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcE-EEEEe
Q 024325          134 F-KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLT  211 (269)
Q Consensus       134 ~-~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~-iiv~N  211 (269)
                      . ..+..+.||||||.....  .........+.. +    ..+|.+++|+|+..+..  .......+... .|+ .+|+|
T Consensus       179 ~~~~~~DvvIIDTpG~~~~~--~~l~~el~~~~~-~----i~pd~vllVvDa~~g~~--~~~~a~~~~~~-~~i~gvVlN  248 (504)
T 2j37_W          179 FKNENFEIIIVDTSGRHKQE--DSLFEEMLQVAN-A----IQPDNIVYVMDASIGQA--CEAQAKAFKDK-VDVASVIVT  248 (504)
T ss_dssp             HHHTTCCEEEEEECCCCTTC--HHHHHHHHHHHH-H----HCCSEEEEEEETTCCTT--HHHHHHHHHHH-HCCCCEEEE
T ss_pred             HHHCCCcEEEEeCCCCcccc--hhHHHHHHHHHh-h----hcCceEEEEEecccccc--HHHHHHHHHhh-cCceEEEEe
Confidence            0 035679999999986531  111111111111 1    14899999999986532  34444444433 675 89999


Q ss_pred             cCCCCCchHHHHHHHHHHHHHHh----------c--CCCCCCeEEeeCCCCCC-HHHHHHHHHHh
Q 024325          212 KTDTVFPIDVARRAMQIEESLKA----------N--NSLVQPVMMVSSKSGAG-IRSLRTVLSKI  263 (269)
Q Consensus       212 K~Dl~~~~~~~~~~~~~~~~~~~----------~--~~~~~~vi~vSa~~g~g-i~~L~~~i~~~  263 (269)
                      |+|........  .. +...+..          .  .....|.+++|+..|.| +++|++++.+.
T Consensus       249 K~D~~~~~g~~--l~-~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          249 KLDGHAKGGGA--LS-AVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             CTTSCCCCTHH--HH-HHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             CCccccchHHH--HH-HHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            99998543321  11 1111100          0  00123456789999999 99999999765

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.38  E-value=2.8e-13  Score=119.79  Aligned_cols=87  Identities=23%  Similarity=0.206  Sum_probs=47.1

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe--------------------CCcEEEEcCCCCCCc
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--------------------GTKLCLVDLPGYGFA  151 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~--------------------~~~~~lvDtpG~~~~  151 (269)
                      ..+|+++|.||+|||||+|+|++. . ..++++|++|.+.+....                    +..+.+|||||+...
T Consensus        22 ~~kvgIVG~pnvGKSTL~n~Ltg~-~-~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~   99 (396)
T 2ohf_A           22 SLKIGIVGLPNVGKSTFFNVLTNS-Q-ASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG   99 (396)
T ss_dssp             CCCEEEECCSSSSHHHHHHHHHC---------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCC-C-ccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence            468999999999999999999998 4 478899999977543221                    234899999998653


Q ss_pred             chhHHHHHHHHHHHHHHHhcccccceEEEEEeCCC
Q 024325          152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW  186 (269)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~  186 (269)
                      ....      ..+...+......+|++++|+|+..
T Consensus       100 as~~------~glg~~~l~~ir~aD~Il~VvD~~~  128 (396)
T 2ohf_A          100 AHNG------QGLGNAFLSHISACDGIFHLTRAFE  128 (396)
T ss_dssp             -------------CCHHHHHHHTSSSEEEEEEC--
T ss_pred             cchh------hHHHHHHHHHHHhcCeEEEEEecCC
Confidence            2110      1122233444455999999999863

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=99.26  E-value=5.5e-12  Score=107.34  Aligned_cols=61  Identities=33%  Similarity=0.610  Sum_probs=42.9

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcc
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAY  152 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~  152 (269)
                      ..++|+++|.||+|||||+|+|++. ....+++.||+|++......+..+.++||||+..+.
T Consensus       119 ~~~~v~~vG~~nvGKSsliN~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~~~~  179 (282)
T 1puj_A          119 RAIRALIIGIPNVGKSTLINRLAKK-NIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPK  179 (282)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTS-CCC------------CCEEETTTEEEEECCCCCCSC
T ss_pred             CCceEEEEecCCCchHHHHHHHhcC-ceeecCCCCCeeeeeEEEEeCCCEEEEECcCcCCCC
Confidence            4578999999999999999999998 567899999999998877778889999999997653

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.11  E-value=4.5e-11  Score=105.87  Aligned_cols=89  Identities=18%  Similarity=0.197  Sum_probs=63.1

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE--e-C-----------------CcEEEEcCCCCCC
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--L-G-----------------TKLCLVDLPGYGF  150 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~--~-~-----------------~~~~lvDtpG~~~  150 (269)
                      ....|+++|++|||||||+|+|++. ..+.++++|+||.+.....  . +                 ..+.++||||+..
T Consensus        19 ~g~~vgiVG~pnaGKSTL~n~Ltg~-~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~   97 (392)
T 1ni3_A           19 NNLKTGIVGMPNVGKSTFFRAITKS-VLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   97 (392)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHS-TTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCC-CcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence            3568999999999999999999998 5558999999998764321  1 2                 2579999999865


Q ss_pred             cchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCC
Q 024325          151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW  186 (269)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~  186 (269)
                      .....+      .+...+......+|.+++|+|+..
T Consensus        98 ~~s~~e------~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           98 GASTGV------GLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCCSSS------SSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             CCcHHH------HHHHHHHHHHHHHHHHHHHHhccc
Confidence            422111      111223333445999999999864

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=99.09  E-value=5.2e-11  Score=100.23  Aligned_cols=59  Identities=27%  Similarity=0.544  Sum_probs=43.4

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAY  152 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~  152 (269)
                      .+++++|.+|+|||||+|+|++. ....+++.||+|+.......+..+.+|||||+..+.
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~~~~  158 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGK-RASSVGAQPGITKGIQWFSLENGVKILDTPGILYKN  158 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTT-CC----------CCSCEEECTTSCEEESSCEECCCC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcc-cccccCCCCCCccceEEEEeCCCEEEEECCCcccCc
Confidence            58999999999999999999998 556788999999998877777889999999998653

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=99.00  E-value=2.9e-10  Score=105.45  Aligned_cols=58  Identities=28%  Similarity=0.304  Sum_probs=42.4

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeE----eeEE------EeCCcEEEEcCCCCCCc
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT----INFF------KLGTKLCLVDLPGYGFA  151 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~----~~~~------~~~~~~~lvDtpG~~~~  151 (269)
                      ..++|+++|.||+|||||+|+|+|.. ..+  +.+++|++    +..+      ..+..+.++||||+...
T Consensus        37 ~~~~VaivG~pnvGKStLiN~L~g~~-~~~--~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~  104 (592)
T 1f5n_A           37 PMVVVAIVGLYRTGKSYLMNKLAGKK-KGF--SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDV  104 (592)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCS-SCS--CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCG
T ss_pred             CCcEEEEECCCCCCHHHHHHhHcCCC-Ccc--ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcc
Confidence            45789999999999999999999983 322  44444433    3222      13567999999999864

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.97  E-value=1.4e-08  Score=90.95  Aligned_cols=145  Identities=16%  Similarity=0.234  Sum_probs=81.9

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC-----cCccccCCCCC----------------c-------eeEee--------EE-
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ-----WGVVRTSDKPG----------------L-------TQTIN--------FF-  134 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~-----~~~~~~s~~~g----------------t-------t~~~~--------~~-  134 (269)
                      ...|+++|.+|+||||++..|...     .++..+...+.                .       ..+..        .. 
T Consensus       100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~  179 (443)
T 3dm5_A          100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK  179 (443)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence            468999999999999999988731     12322221111                0       00100        00 


Q ss_pred             EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCC
Q 024325          135 KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD  214 (269)
Q Consensus       135 ~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~D  214 (269)
                      ..+..+.++||||.....  .........+    .. ...+|.+++|+|+..+  .........+...-.+..+|+||+|
T Consensus       180 ~~~~DvVIIDTaGrl~~d--~~lm~el~~i----~~-~~~pd~vlLVvDA~~g--q~a~~~a~~f~~~~~i~gVIlTKlD  250 (443)
T 3dm5_A          180 SKGVDIIIVDTAGRHKED--KALIEEMKQI----SN-VIHPHEVILVIDGTIG--QQAYNQALAFKEATPIGSIIVTKLD  250 (443)
T ss_dssp             HTTCSEEEEECCCCSSCC--HHHHHHHHHH----HH-HHCCSEEEEEEEGGGG--GGHHHHHHHHHHSCTTEEEEEECCS
T ss_pred             hCCCCEEEEECCCcccch--HHHHHHHHHH----HH-hhcCceEEEEEeCCCc--hhHHHHHHHHHhhCCCeEEEEECCC
Confidence            014679999999975431  1111111111    11 1237899999998753  2223444444444455679999999


Q ss_pred             CCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHH
Q 024325          215 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL  256 (269)
Q Consensus       215 l~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L  256 (269)
                      .........      ....   ....|+.+++.  |+++++|
T Consensus       251 ~~~~gG~~l------s~~~---~~g~PI~fig~--Ge~vddL  281 (443)
T 3dm5_A          251 GSAKGGGAL------SAVA---ATGAPIKFIGT--GEKIDDI  281 (443)
T ss_dssp             SCSSHHHHH------HHHH---TTCCCEEEEEC--SSSTTCE
T ss_pred             CcccccHHH------HHHH---HHCCCEEEEEc--CCChHHh
Confidence            876543211      1111   23678988886  7777654

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=98.95  E-value=5.4e-09  Score=90.36  Aligned_cols=116  Identities=11%  Similarity=0.086  Sum_probs=72.0

Q ss_pred             CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCC-------CCCCcc-hH---HHHHHHHh----
Q 024325          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK-------WGVKPR-DH---ELISLMER----  201 (269)
Q Consensus       137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~-------~~~~~~-~~---~~~~~l~~----  201 (269)
                      +..+.+|||+|..             ............++++++|+|.+       +.-... -.   .+++.+..    
T Consensus       166 ~v~l~iwDtgGQe-------------~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~  232 (327)
T 3ohm_A          166 SVIFRMVDVGGQR-------------SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF  232 (327)
T ss_dssp             TEEEEEEEECCSH-------------HHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGG
T ss_pred             ceeeEEEEcCCch-------------hHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhcc
Confidence            4568899999961             11112223344599999999765       111111 11   23333322    


Q ss_pred             hCCcEEEEEecCCCCCc------------------hHHHHHHHHHHHHHHhcC---CCCCCeEEeeCCCCCCHHHHHHHH
Q 024325          202 SQTKYQVVLTKTDTVFP------------------IDVARRAMQIEESLKANN---SLVQPVMMVSSKSGAGIRSLRTVL  260 (269)
Q Consensus       202 ~~~p~iiv~NK~Dl~~~------------------~~~~~~~~~~~~~~~~~~---~~~~~vi~vSa~~g~gi~~L~~~i  260 (269)
                      .++|+++++||+|+...                  .+.+...+.+...+....   .......++||+++.|++.+++.+
T Consensus       233 ~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v  312 (327)
T 3ohm_A          233 QNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAV  312 (327)
T ss_dssp             TTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHH
Confidence            36899999999998642                  234444555555444332   123456789999999999999999


Q ss_pred             HHhhh
Q 024325          261 SKIAR  265 (269)
Q Consensus       261 ~~~~~  265 (269)
                      .+.+-
T Consensus       313 ~~~Il  317 (327)
T 3ohm_A          313 KDTIL  317 (327)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88764

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.93  E-value=1.5e-09  Score=97.41  Aligned_cols=117  Identities=18%  Similarity=0.174  Sum_probs=68.7

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCc-----CccccCCC------------------------CCceeEee-E------EE
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDK------------------------PGLTQTIN-F------FK  135 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~-----~~~~~s~~------------------------~gtt~~~~-~------~~  135 (269)
                      ...|+++|.+|+||||+++.|....     ++..++..                        ++++++.. .      ..
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~  178 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF  178 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence            4579999999999999999987631     22222211                        11333321 0      01


Q ss_pred             eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCC-c-EEEEEecC
Q 024325          136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT-K-YQVVLTKT  213 (269)
Q Consensus       136 ~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~-p-~iiv~NK~  213 (269)
                      .+..+.++||||....   +  ......+ .. ......+|.+++|+|+..+.  ........+.. .. | ..+|+||+
T Consensus       179 ~~~D~vIIDT~G~~~~---~--~~l~~~l-~~-i~~~~~~d~vllVvda~~g~--~~~~~~~~~~~-~~~~i~gvVlnK~  248 (432)
T 2v3c_C          179 KKADVLIIDTAGRHKE---E--KGLLEEM-KQ-IKEITNPDEIILVIDGTIGQ--QAGIQAKAFKE-AVGEIGSIIVTKL  248 (432)
T ss_dssp             SSCSEEEEECCCSCSS---H--HHHHHHH-HH-TTSSSCCSEEEEEEEGGGGG--GHHHHHHHHHT-TSCSCEEEEEECS
T ss_pred             hCCCEEEEcCCCCccc---c--HHHHHHH-HH-HHHHhcCcceeEEeeccccH--HHHHHHHHHhh-cccCCeEEEEeCC
Confidence            3667999999998542   1  1111222 11 22333589999999987542  22233333332 35 6 88999999


Q ss_pred             CCCCc
Q 024325          214 DTVFP  218 (269)
Q Consensus       214 Dl~~~  218 (269)
                      |....
T Consensus       249 D~~~~  253 (432)
T 2v3c_C          249 DGSAK  253 (432)
T ss_dssp             SSCST
T ss_pred             CCccc
Confidence            98753

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=98.92  E-value=1.3e-08  Score=81.74  Aligned_cols=166  Identities=13%  Similarity=0.080  Sum_probs=88.4

Q ss_pred             CCCcEEEEEcC-CCCChHHHHHHHhcCcCccccCCCC-----CceeEe----------eEEEe-----------------
Q 024325           90 PDLPEIAFAGR-SNVGKSSMLNALTRQWGVVRTSDKP-----GLTQTI----------NFFKL-----------------  136 (269)
Q Consensus        90 ~~~~~v~ivG~-~~~GKSsLin~l~~~~~~~~~s~~~-----gtt~~~----------~~~~~-----------------  136 (269)
                      ...|+++++|+ -..=+.+|+.+|.....+.++...|     |....+          +..+.                 
T Consensus        14 ~~~pr~amfgpgle~~~~~lv~~~m~~~~~~p~~g~~~~~~~gigsgv~~~~~~~~~fni~tlys~~~~er~~~~~~~~~   93 (227)
T 3l82_B           14 QNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKERDRAREEHTS   93 (227)
T ss_dssp             CCCCEEEEECGGGTSSSSCHHHHHHTCCSSCCEECCGGGCCTTSCCCEEEESSSSCEEEEEECSCC--------------
T ss_pred             CCCceEEEecCCcccccHHHHHHHhcCCCcccccCCCCCCcCccccceEEEECCeeEEEEEEeccCcHHHhhhhhhhhhh
Confidence            55689999997 3445568998888764344333322     111111          11110                 


Q ss_pred             -CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcch-HHH---HHHHHh----hCCcEE
Q 024325          137 -GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HEL---ISLMER----SQTKYQ  207 (269)
Q Consensus       137 -~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~---~~~l~~----~~~p~i  207 (269)
                       ..++....+||-...-.++.++..|..+...       +|++|||||+++...... .++   ...+..    .+.|++
T Consensus        94 ~~~k~~~~~~~~~~~~GGQ~klRplWr~Yy~~-------TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLL  166 (227)
T 3l82_B           94 AVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEV-------VDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLL  166 (227)
T ss_dssp             -----------------------CCHHHHHHH-------CSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEE
T ss_pred             hhhhcccccCCCccccCcHHHHHHHHHHHhcC-------CCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEE
Confidence             1234555666522222345566667665544       999999999986422222 233   233322    357999


Q ss_pred             EEEecC-CCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          208 VVLTKT-DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       208 iv~NK~-Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      |..||. |+..+....+..+.+.  +... ...+.+.++||++|+||.+-++||.+.+.
T Consensus       167 VlANKqqDlp~Ams~~EI~e~L~--L~~l-~R~W~Iq~csA~TGeGL~EGLdWL~~~l~  222 (227)
T 3l82_B          167 VLSCISQGDVKRMPCFYLAHELH--LNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVE  222 (227)
T ss_dssp             EEEEESSTTSCBCCHHHHHHHTT--GGGG-CSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred             EEeCCCcCccCCCCHHHHHHHcC--CcCC-CCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence            999995 7765544444433332  1112 13566899999999999999999988764

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.89  E-value=7e-09  Score=88.10  Aligned_cols=91  Identities=13%  Similarity=0.180  Sum_probs=66.2

Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEe
Q 024325          166 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV  245 (269)
Q Consensus       166 ~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v  245 (269)
                      +.+......+|++++|+|+..+.......+-+++  .++|.++|+||+|+.++........    .+..   .+.+++++
T Consensus        15 ~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~~~~~~~~~----~~~~---~g~~~i~i   85 (282)
T 1puj_A           15 REVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKADAAVTQQWKE----HFEN---QGIRSLSI   85 (282)
T ss_dssp             HHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGSCHHHHHHHHH----HHHT---TTCCEEEC
T ss_pred             HHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccCCHHHHHHHHH----HHHh---cCCcEEEE
Confidence            3444455669999999999987776655554544  4789999999999997543322222    2221   24689999


Q ss_pred             eCCCCCCHHHHHHHHHHhhh
Q 024325          246 SSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       246 Sa~~g~gi~~L~~~i~~~~~  265 (269)
                      ||++|.|+++|++.|.+.+.
T Consensus        86 SA~~~~gi~~L~~~i~~~l~  105 (282)
T 1puj_A           86 NSVNGQGLNQIVPASKEILQ  105 (282)
T ss_dssp             CTTTCTTGGGHHHHHHHHHH
T ss_pred             ECCCcccHHHHHHHHHHHHH
Confidence            99999999999998887654

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.86  E-value=3.6e-08  Score=88.27  Aligned_cols=144  Identities=19%  Similarity=0.194  Sum_probs=79.4

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCc-----CccccCCC----------------CCc-------eeEee--------EE-
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDK----------------PGL-------TQTIN--------FF-  134 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~-----~~~~~s~~----------------~gt-------t~~~~--------~~-  134 (269)
                      ...|+++|++|+||||++..|....     ++..+...                .+.       ..+..        .. 
T Consensus        97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~  176 (433)
T 3kl4_A           97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV  176 (433)
T ss_dssp             SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence            4578999999999999999887310     22111100                010       00100        00 


Q ss_pred             EeCCcEEEEcCCCCCCc-chhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecC
Q 024325          135 KLGTKLCLVDLPGYGFA-YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKT  213 (269)
Q Consensus       135 ~~~~~~~lvDtpG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~  213 (269)
                      ..++.+.++||||.... ....... ....+.    ... ..+.+++|+|+..+  .......+.+...-.+..+|+||+
T Consensus       177 ~~~~DvvIIDTaGr~~~~~d~~lm~-el~~i~----~~~-~pd~vlLVlDa~~g--q~a~~~a~~f~~~~~~~gVIlTKl  248 (433)
T 3kl4_A          177 KNKMDIIIVDTAGRHGYGEETKLLE-EMKEMY----DVL-KPDDVILVIDASIG--QKAYDLASRFHQASPIGSVIITKM  248 (433)
T ss_dssp             TTTCSEEEEEECCCSSSCCTTHHHH-HHHHHH----HHH-CCSEEEEEEEGGGG--GGGHHHHHHHHHHCSSEEEEEECG
T ss_pred             hcCCCEEEEECCCCccccCCHHHHH-HHHHHH----Hhh-CCcceEEEEeCccc--hHHHHHHHHHhcccCCcEEEEecc
Confidence            02567999999996431 1111111 111111    111 26889999999753  223345555554446688999999


Q ss_pred             CCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHH
Q 024325          214 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIR  254 (269)
Q Consensus       214 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~  254 (269)
                      |........  ..... .      ...|+.+++.  |++++
T Consensus       249 D~~a~~G~a--ls~~~-~------~g~Pi~fig~--Ge~v~  278 (433)
T 3kl4_A          249 DGTAKGGGA--LSAVV-A------TGATIKFIGT--GEKID  278 (433)
T ss_dssp             GGCSCHHHH--HHHHH-H------HTCEEEEEEC--CSSSS
T ss_pred             cccccchHH--HHHHH-H------HCCCEEEEEC--CCChH
Confidence            987543321  11111 1      1578989986  77764

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=98.84  E-value=9.3e-09  Score=89.24  Aligned_cols=116  Identities=11%  Similarity=0.040  Sum_probs=70.7

Q ss_pred             CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCC-------CCcc-hH---HHHHHHHh----
Q 024325          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------VKPR-DH---ELISLMER----  201 (269)
Q Consensus       137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~-------~~~~-~~---~~~~~l~~----  201 (269)
                      +..+.+|||+|..          .+..   .+......++++++|+|.+.-       .... -.   .++..+..    
T Consensus       160 ~v~l~iwDtaGQe----------~~R~---~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~  226 (340)
T 4fid_A          160 DIPFHLIDVGGQR----------SERK---XWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFL  226 (340)
T ss_dssp             SCEEEEEECCSCH----------HHHH---HHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGG
T ss_pred             eeeeccccCCCcc----------cccc---cHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhcc
Confidence            5568999999961          1122   223334559999999998721       0111 11   22222222    


Q ss_pred             hCCcEEEEEecCCCCCc-----------------hHHHHHHHHHHHHH------HhcCC--------------CCCCeEE
Q 024325          202 SQTKYQVVLTKTDTVFP-----------------IDVARRAMQIEESL------KANNS--------------LVQPVMM  244 (269)
Q Consensus       202 ~~~p~iiv~NK~Dl~~~-----------------~~~~~~~~~~~~~~------~~~~~--------------~~~~vi~  244 (269)
                      .++|+++++||+|+...                 ...++..+.+.+.+      .....              ....+.+
T Consensus       227 ~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~  306 (340)
T 4fid_A          227 KGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNP  306 (340)
T ss_dssp             TTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEE
T ss_pred             CCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEE
Confidence            36899999999998631                 12334445555544      11110              1245689


Q ss_pred             eeCCCCCCHHHHHHHHHHhhh
Q 024325          245 VSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       245 vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      +||++..|++.+|+.+.+.+-
T Consensus       307 TsA~dt~nv~~vF~~v~~~Il  327 (340)
T 4fid_A          307 TNATDGSNIKRVFMLAVDVIM  327 (340)
T ss_dssp             ECTTCHHHHHHHHHHHHHHHH
T ss_pred             EEeeCcHHHHHHHHHHHHHHH
Confidence            999999999999998887653

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.82  E-value=2.6e-08  Score=93.36  Aligned_cols=80  Identities=18%  Similarity=0.237  Sum_probs=45.5

Q ss_pred             CcEEEEcCCCCCCcch---hHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcc-hHHHHHHHHhhCCcEEEEEecC
Q 024325          138 TKLCLVDLPGYGFAYA---KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMERSQTKYQVVLTKT  213 (269)
Q Consensus       138 ~~~~lvDtpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~-~~~~~~~l~~~~~p~iiv~NK~  213 (269)
                      +.+.++|.||+.....   .......+..+...|...  .-.++++++++....... ...++..+...+.+.|+|+||+
T Consensus       147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~--~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~  224 (608)
T 3szr_A          147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQR--QETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKP  224 (608)
T ss_dssp             CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTS--SSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECG
T ss_pred             CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhc--CCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecch
Confidence            5689999999875311   112233344555555433  134566666655433322 2455566655678999999999


Q ss_pred             CCCCch
Q 024325          214 DTVFPI  219 (269)
Q Consensus       214 Dl~~~~  219 (269)
                      |++...
T Consensus       225 Dlv~~g  230 (608)
T 3szr_A          225 DLVDKG  230 (608)
T ss_dssp             GGSSSS
T ss_pred             hhcCcc
Confidence            998653

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.80  E-value=1.5e-08  Score=86.84  Aligned_cols=87  Identities=18%  Similarity=0.166  Sum_probs=60.5

Q ss_pred             ccccceEEEEEeCCCCC-Ccch-HHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCC
Q 024325          172 RVSLKRVCLLIDTKWGV-KPRD-HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS  249 (269)
Q Consensus       172 ~~~~d~vl~vid~~~~~-~~~~-~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~  249 (269)
                      ..++|.+++|+|+.++. .... ..++..+...++|+++|+||+|+.++.+... .....+....   .+.+++++||++
T Consensus        77 ~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~-~~~~~~~~~~---~g~~~~~~SA~~  152 (302)
T 2yv5_A           77 VANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKE-LERWISIYRD---AGYDVLKVSAKT  152 (302)
T ss_dssp             EESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHH-HHHHHHHHHH---TTCEEEECCTTT
T ss_pred             HHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccccHH-HHHHHHHHHH---CCCeEEEEECCC
Confidence            45599999999998653 3221 3455566667899999999999987542111 1222222222   246899999999


Q ss_pred             CCCHHHHHHHHHH
Q 024325          250 GAGIRSLRTVLSK  262 (269)
Q Consensus       250 g~gi~~L~~~i~~  262 (269)
                      |.|+++|++.+..
T Consensus       153 g~gi~~L~~~l~G  165 (302)
T 2yv5_A          153 GEGIDELVDYLEG  165 (302)
T ss_dssp             CTTHHHHHHHTTT
T ss_pred             CCCHHHHHhhccC
Confidence            9999999988754

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=98.77  E-value=3.1e-08  Score=84.88  Aligned_cols=86  Identities=22%  Similarity=0.337  Sum_probs=59.0

Q ss_pred             ccccceEEEEEeCCCCCCcch--HHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCC
Q 024325          172 RVSLKRVCLLIDTKWGVKPRD--HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS  249 (269)
Q Consensus       172 ~~~~d~vl~vid~~~~~~~~~--~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~  249 (269)
                      ..++|++++|+|+..+.....  ..++..+...++|+++|+||+|+.+.....+    ..+....+... .+++++||++
T Consensus        82 ~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~~~~~v~~----~~~~~~~~~~~-~~~~~~SAkt  156 (301)
T 1u0l_A           82 VANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRK----VRELEEIYSGL-YPIVKTSAKT  156 (301)
T ss_dssp             EESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHH----HHHHHHHHTTT-SCEEECCTTT
T ss_pred             cccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcCCchhHHH----HHHHHHHHhhh-CcEEEEECCC
Confidence            345999999999986432221  3445555556899999999999986543211    12222222222 6899999999


Q ss_pred             CCCHHHHHHHHHH
Q 024325          250 GAGIRSLRTVLSK  262 (269)
Q Consensus       250 g~gi~~L~~~i~~  262 (269)
                      |.|++++++++..
T Consensus       157 g~gv~~lf~~l~g  169 (301)
T 1u0l_A          157 GMGIEELKEYLKG  169 (301)
T ss_dssp             CTTHHHHHHHHSS
T ss_pred             CcCHHHHHHHhcC
Confidence            9999999988754

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=98.72  E-value=1e-08  Score=90.07  Aligned_cols=116  Identities=13%  Similarity=0.065  Sum_probs=69.5

Q ss_pred             CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC-------c-ch---HHHHHHHHh----
Q 024325          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK-------P-RD---HELISLMER----  201 (269)
Q Consensus       137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~-------~-~~---~~~~~~l~~----  201 (269)
                      +..+.+|||+|...             ...........++++++|+|.+...+       . .-   ..++..+..    
T Consensus       200 ~~~l~i~Dt~Gq~~-------------~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~  266 (362)
T 1zcb_A          200 NVPFKMVDVGGQRS-------------ERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVF  266 (362)
T ss_dssp             TEEEEEEEECC--------------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred             CeEEEEEeccchhh-------------hhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhh
Confidence            56789999999732             11122233446999999999985211       1 11   123333322    


Q ss_pred             hCCcEEEEEecCCCCCc------------------hHHHHHHHHHHHHHHhcC----CCCCCeEEeeCCCCCCHHHHHHH
Q 024325          202 SQTKYQVVLTKTDTVFP------------------IDVARRAMQIEESLKANN----SLVQPVMMVSSKSGAGIRSLRTV  259 (269)
Q Consensus       202 ~~~p~iiv~NK~Dl~~~------------------~~~~~~~~~~~~~~~~~~----~~~~~vi~vSa~~g~gi~~L~~~  259 (269)
                      .+.|+++|+||+|+...                  .........+...+....    .....++++||++|+|+++++++
T Consensus       267 ~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~  346 (362)
T 1zcb_A          267 SNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRD  346 (362)
T ss_dssp             TTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHH
Confidence            36899999999998521                  223333333333332221    22456789999999999999999


Q ss_pred             HHHhhh
Q 024325          260 LSKIAR  265 (269)
Q Consensus       260 i~~~~~  265 (269)
                      +.+.+.
T Consensus       347 v~~~i~  352 (362)
T 1zcb_A          347 VKDTIL  352 (362)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            987654

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=98.72  E-value=7.3e-09  Score=90.64  Aligned_cols=116  Identities=11%  Similarity=0.101  Sum_probs=72.1

Q ss_pred             CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC-------c-chH---HHHHHHHh----
Q 024325          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK-------P-RDH---ELISLMER----  201 (269)
Q Consensus       137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~-------~-~~~---~~~~~l~~----  201 (269)
                      +..+.+|||+|...-      +..|       ......++++++|+|.+...+       . .-.   .+++.+..    
T Consensus       192 ~~~l~iwDt~GQe~~------r~~w-------~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~  258 (353)
T 1cip_A          192 DLHFKMFDVGGQRSE------RKKW-------IHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF  258 (353)
T ss_dssp             TEEEEEEEECCSGGG------GGGG-------GGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred             CeeEEEEeCCCchhh------hHHH-------HHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence            567899999997321      1111       223345999999999875211       1 112   23333332    


Q ss_pred             hCCcEEEEEecCCCCCc-----------------hHHHHHHHHHHHHHHhcC----CCCCCeEEeeCCCCCCHHHHHHHH
Q 024325          202 SQTKYQVVLTKTDTVFP-----------------IDVARRAMQIEESLKANN----SLVQPVMMVSSKSGAGIRSLRTVL  260 (269)
Q Consensus       202 ~~~p~iiv~NK~Dl~~~-----------------~~~~~~~~~~~~~~~~~~----~~~~~vi~vSa~~g~gi~~L~~~i  260 (269)
                      .+.|+++|+||+|+...                 ....+....+...+....    .....++++||++|.|++++++++
T Consensus       259 ~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v  338 (353)
T 1cip_A          259 TDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAV  338 (353)
T ss_dssp             TTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             cCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHH
Confidence            36899999999998521                 122333333433332221    234568899999999999999999


Q ss_pred             HHhhh
Q 024325          261 SKIAR  265 (269)
Q Consensus       261 ~~~~~  265 (269)
                      .+.+.
T Consensus       339 ~~~i~  343 (353)
T 1cip_A          339 TDVII  343 (353)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88764

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.71  E-value=4e-08  Score=86.62  Aligned_cols=89  Identities=12%  Similarity=0.005  Sum_probs=58.9

Q ss_pred             cceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchH-HHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCH
Q 024325          175 LKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID-VARRAMQIEESLKANNSLVQPVMMVSSKSGAGI  253 (269)
Q Consensus       175 ~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi  253 (269)
                      ++++++|+|+.+........+.+.+  .++|+++|+||+|+.+... .....+.+...+........+++.+||++|+|+
T Consensus        72 ~~lil~VvD~~d~~~s~~~~l~~~l--~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi  149 (369)
T 3ec1_A           72 KALVVNIVDIFDFNGSFIPGLPRFA--ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGM  149 (369)
T ss_dssp             CCEEEEEEETTCSGGGCCSSHHHHC--TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEEEECBTTTTBTH
T ss_pred             CcEEEEEEECCCCCCchhhHHHHHh--CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccEEEEECCCCCCH
Confidence            7899999999864433322333332  2689999999999987532 222233333333332211237899999999999


Q ss_pred             HHHHHHHHHhhh
Q 024325          254 RSLRTVLSKIAR  265 (269)
Q Consensus       254 ~~L~~~i~~~~~  265 (269)
                      ++|++.|.+...
T Consensus       150 ~~L~~~I~~~~~  161 (369)
T 3ec1_A          150 AKVMEAINRYRE  161 (369)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHhhcc
Confidence            999999987543

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.70  E-value=3.9e-08  Score=86.61  Aligned_cols=98  Identities=15%  Similarity=0.089  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHh--hCCcEEEEEecCCCCCchH-HHHHHHHHHHHHHhcC
Q 024325          160 AWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER--SQTKYQVVLTKTDTVFPID-VARRAMQIEESLKANN  236 (269)
Q Consensus       160 ~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~--~~~p~iiv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~  236 (269)
                      .+..+...+.+.   .+++++|+|+.+..    ..+...+..  .++|+++|+||+|+.+... .....+.+........
T Consensus        58 ~f~~~l~~i~~~---~~~il~VvD~~d~~----~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g  130 (368)
T 3h2y_A           58 DFLRILNGIGKS---DALVVKIVDIFDFN----GSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLG  130 (368)
T ss_dssp             HHHHHHHHHHHS---CCEEEEEEETTSHH----HHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcc---CcEEEEEEECCCCc----ccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcC
Confidence            344555555443   78999999997521    222222222  3689999999999986532 2222223333333322


Q ss_pred             CCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325          237 SLVQPVMMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       237 ~~~~~vi~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      ....+++.+||++|+|+++|++.|.+..
T Consensus       131 ~~~~~v~~iSA~~g~gi~~L~~~l~~~~  158 (368)
T 3h2y_A          131 LKPEDVFLISAAKGQGIAELADAIEYYR  158 (368)
T ss_dssp             CCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence            1123789999999999999999997654

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.56  E-value=3.3e-07  Score=77.06  Aligned_cols=101  Identities=9%  Similarity=-0.001  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcch-HH---HHHHHHh----hCCcEEEEEec-CCCCCchHHHHHH
Q 024325          155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HE---LISLMER----SQTKYQVVLTK-TDTVFPIDVARRA  225 (269)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~-~~---~~~~l~~----~~~p~iiv~NK-~Dl~~~~~~~~~~  225 (269)
                      +.++..|..+...       .|++|||||+++...... .+   +...+..    .+.|++|..|| -|+..+....++.
T Consensus       198 ~~lRplWr~Yy~~-------tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~  270 (312)
T 3l2o_B          198 YSVIPQIQKVCEV-------VDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLA  270 (312)
T ss_dssp             CCCCHHHHHHHHH-------CSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHH
T ss_pred             HHHHHHHHHHhcC-------CCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHH
Confidence            3455667655544       999999999986432222 11   2233321    47899999997 5887655444444


Q ss_pred             HHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          226 MQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       226 ~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      +.+.  +... .....+.++||.+|+|+.+-++||.+.+.
T Consensus       271 e~L~--L~~l-~r~W~Iq~csA~tGeGL~EGldWL~~~l~  307 (312)
T 3l2o_B          271 HELH--LNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVE  307 (312)
T ss_dssp             HHTT--GGGG-CSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred             HHcC--CccC-CCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence            3332  1111 12456899999999999999999998764

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.55  E-value=5.5e-08  Score=81.66  Aligned_cols=82  Identities=11%  Similarity=0.012  Sum_probs=57.7

Q ss_pred             hcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCC
Q 024325          170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS  249 (269)
Q Consensus       170 ~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~  249 (269)
                      .....+|++++|+|+..+.......+- .+   ++|.++|+||+|+.++.........+    ..   .+.++ ++||++
T Consensus        17 ~~l~~~D~vl~VvDar~P~~~~~~~l~-ll---~k~~iivlNK~DL~~~~~~~~~~~~~----~~---~g~~v-~iSa~~   84 (262)
T 3cnl_A           17 DLLRLVNTVVEVRDARAPFATSAYGVD-FS---RKETIILLNKVDIADEKTTKKWVEFF----KK---QGKRV-ITTHKG   84 (262)
T ss_dssp             HHHTTCSEEEEEEETTSTTTTSCTTSC-CT---TSEEEEEEECGGGSCHHHHHHHHHHH----HH---TTCCE-EECCTT
T ss_pred             HHHhhCCEEEEEeeCCCCCcCcChHHH-hc---CCCcEEEEECccCCCHHHHHHHHHHH----HH---cCCeE-EEECCC
Confidence            334559999999999876655432222 22   89999999999999764433322222    22   24678 999999


Q ss_pred             CCCHHHHHHHHHHh
Q 024325          250 GAGIRSLRTVLSKI  263 (269)
Q Consensus       250 g~gi~~L~~~i~~~  263 (269)
                      |.|+++|++.|...
T Consensus        85 ~~gi~~L~~~l~~~   98 (262)
T 3cnl_A           85 EPRKVLLKKLSFDR   98 (262)
T ss_dssp             SCHHHHHHHHCCCT
T ss_pred             CcCHHHHHHHHHHh
Confidence            99999999887653

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.55  E-value=3.6e-07  Score=78.02  Aligned_cols=147  Identities=17%  Similarity=0.189  Sum_probs=78.6

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCc-----CccccCCCCC-----------------------ceeEe--------eEEE
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKPG-----------------------LTQTI--------NFFK  135 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~-----~~~~~s~~~g-----------------------tt~~~--------~~~~  135 (269)
                      ...++++|++|+||||++..|.+..     ++..+...+.                       ...+.        ....
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~  177 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL  177 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence            4578999999999999998877321     2221111100                       00010        0001


Q ss_pred             -eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCc-EEEEEecC
Q 024325          136 -LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKT  213 (269)
Q Consensus       136 -~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p-~iiv~NK~  213 (269)
                       .++.+.++||||.......+........+. .    ...+|.+++|+|+..+  .......+.+.. ..| ..+|+||+
T Consensus       178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~-~----~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~  249 (297)
T 1j8m_F          178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNIY-E----AIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKM  249 (297)
T ss_dssp             HTTCSEEEEECCCSCCTTCHHHHHHHHHHHH-H----HHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECG
T ss_pred             hCCCCEEEEeCCCCcccccHHHHHHHHHHHH-H----HhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCC
Confidence             356799999999754100111111111111 1    1138899999998632  222333344433 466 77899999


Q ss_pred             CCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHH
Q 024325          214 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLR  257 (269)
Q Consensus       214 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~  257 (269)
                      |.......  .    .....   ....|+.+++  +|+++++|.
T Consensus       250 D~~~~~g~--~----~~~~~---~~~~pi~~i~--~Ge~v~dl~  282 (297)
T 1j8m_F          250 DGTAKGGG--A----LSAVA---ATGATIKFIG--TGEKIDELE  282 (297)
T ss_dssp             GGCTTHHH--H----HHHHH---TTTCCEEEEE--CSSSTTCEE
T ss_pred             CCCcchHH--H----HHHHH---HHCcCEEEEe--CCCChhhcc
Confidence            98654321  1    11111   2257888887  677776543

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=98.47  E-value=9.8e-08  Score=83.49  Aligned_cols=116  Identities=12%  Similarity=0.088  Sum_probs=66.6

Q ss_pred             CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCC-------CCCcc-hH---HHHHHHHh----
Q 024325          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW-------GVKPR-DH---ELISLMER----  201 (269)
Q Consensus       137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~-------~~~~~-~~---~~~~~l~~----  201 (269)
                      ...+.+|||+|...-          ..+..   .....++++++|+|.+.       ..... -.   .+++.+..    
T Consensus       182 ~v~l~iwDtaGQe~~----------r~~~~---~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~  248 (354)
T 2xtz_A          182 GEVYRLFDVGGQRNE----------RRKWI---HLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF  248 (354)
T ss_dssp             --EEEEEEECCSTTG----------GGGTG---GGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGG
T ss_pred             ceeeEEEECCCchhh----------hHHHH---HHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhcccc
Confidence            356899999997431          11112   22345999999999861       10111 12   23333332    


Q ss_pred             hCCcEEEEEecCCCCCch-----------------------HHHHHHHHHHHHHHhc---C------CCCCCeEEeeCCC
Q 024325          202 SQTKYQVVLTKTDTVFPI-----------------------DVARRAMQIEESLKAN---N------SLVQPVMMVSSKS  249 (269)
Q Consensus       202 ~~~p~iiv~NK~Dl~~~~-----------------------~~~~~~~~~~~~~~~~---~------~~~~~vi~vSa~~  249 (269)
                      .+.|+++|+||+|+....                       ..++....+.+.+...   .      .....++++||++
T Consensus       249 ~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d  328 (354)
T 2xtz_A          249 EKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALD  328 (354)
T ss_dssp             SSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTC
T ss_pred             CCCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeec
Confidence            358999999999984210                       1222222223222111   0      1123468999999


Q ss_pred             CCCHHHHHHHHHHhhh
Q 024325          250 GAGIRSLRTVLSKIAR  265 (269)
Q Consensus       250 g~gi~~L~~~i~~~~~  265 (269)
                      ++||+++|+++.+.+.
T Consensus       329 ~~nV~~vF~~v~~~I~  344 (354)
T 2xtz_A          329 QKLVKKTFKLVDETLR  344 (354)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHH
Confidence            9999999999987664

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=98.40  E-value=3.7e-07  Score=80.96  Aligned_cols=116  Identities=10%  Similarity=0.041  Sum_probs=67.7

Q ss_pred             CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCC---------CCcch--HHHHHHHHh----
Q 024325          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG---------VKPRD--HELISLMER----  201 (269)
Q Consensus       137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~---------~~~~~--~~~~~~l~~----  201 (269)
                      +..+.+|||+|...-          ..+...   ....++++++|+|.+.-         ....+  ..+++.+..    
T Consensus       216 ~v~l~iwDtaGQe~~----------r~~w~~---yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~  282 (402)
T 1azs_C          216 KVNFHMFDVGGQRDE----------RRKWIQ---CFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWL  282 (402)
T ss_dssp             TEEEEEEEECCSGGG----------GGGGGG---GTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTC
T ss_pred             Cccceecccchhhhh----------hhhhHh---hccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccC
Confidence            567899999997321          111122   23349999999998751         11111  223333332    


Q ss_pred             hCCcEEEEEecCCCCCch--------------------------------HHHHHHHHHHHHHHhc------CCCCCCeE
Q 024325          202 SQTKYQVVLTKTDTVFPI--------------------------------DVARRAMQIEESLKAN------NSLVQPVM  243 (269)
Q Consensus       202 ~~~p~iiv~NK~Dl~~~~--------------------------------~~~~~~~~~~~~~~~~------~~~~~~vi  243 (269)
                      .++|+++|+||+|+....                                ........+...+...      ......++
T Consensus       283 ~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~  362 (402)
T 1azs_C          283 RTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPH  362 (402)
T ss_dssp             SSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEE
T ss_pred             CCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEE
Confidence            257999999999984211                                0122222222221111      00123467


Q ss_pred             EeeCCCCCCHHHHHHHHHHhhh
Q 024325          244 MVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       244 ~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      ++||+++.||+++|+.+.+.+.
T Consensus       363 ~TSA~d~~nV~~vF~~v~~~I~  384 (402)
T 1azs_C          363 FTCAVDTENIRRVFNDCRDIIQ  384 (402)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHH
T ss_pred             EEEeecCcCHHHHHHHHHHHHH
Confidence            8999999999999999887764

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.33  E-value=3.5e-06  Score=72.89  Aligned_cols=146  Identities=19%  Similarity=0.236  Sum_probs=76.5

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCc-----CccccCCCC---Cc-------ee--EeeEEE------------------
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKP---GL-------TQ--TINFFK------------------  135 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~-----~~~~~s~~~---gt-------t~--~~~~~~------------------  135 (269)
                      ..-.++++|++||||||+++.|.+..     .+...+...   +.       .+  .+.+..                  
T Consensus       128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~  207 (328)
T 3e70_C          128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA  207 (328)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence            34589999999999999999988642     111110000   00       00  000100                  


Q ss_pred             --eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecC
Q 024325          136 --LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKT  213 (269)
Q Consensus       136 --~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~  213 (269)
                        .+..+.++||+|...... . .......+..    . -..|-.++++|+..+  ..-...+..+...-....+++||.
T Consensus       208 ~~~~~d~vliDtaG~~~~~~-~-l~~eL~~i~r----a-l~~de~llvLDa~t~--~~~~~~~~~~~~~~~it~iilTKl  278 (328)
T 3e70_C          208 KARGIDVVLIDTAGRSETNR-N-LMDEMKKIAR----V-TKPNLVIFVGDALAG--NAIVEQARQFNEAVKIDGIILTKL  278 (328)
T ss_dssp             HHHTCSEEEEEECCSCCTTT-C-HHHHHHHHHH----H-HCCSEEEEEEEGGGT--THHHHHHHHHHHHSCCCEEEEECG
T ss_pred             HhccchhhHHhhccchhHHH-H-HHHHHHHHHH----H-hcCCCCEEEEecHHH--HHHHHHHHHHHHhcCCCEEEEeCc
Confidence              134578999999754211 1 1111111111    1 126888999997643  122233333333223457889999


Q ss_pred             CCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHH
Q 024325          214 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL  256 (269)
Q Consensus       214 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L  256 (269)
                      |.......  .....    ..   ...|+.+++  +|+++++|
T Consensus       279 D~~a~~G~--~l~~~----~~---~~~pi~~i~--~Ge~v~dl  310 (328)
T 3e70_C          279 DADARGGA--ALSIS----YV---IDAPILFVG--VGQGYDDL  310 (328)
T ss_dssp             GGCSCCHH--HHHHH----HH---HTCCEEEEE--CSSSTTCE
T ss_pred             CCccchhH--HHHHH----HH---HCCCEEEEe--CCCCcccc
Confidence            97543222  11111    11   157899998  77777654

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.31  E-value=4e-07  Score=77.98  Aligned_cols=86  Identities=14%  Similarity=0.170  Sum_probs=57.6

Q ss_pred             ccccceEEEEEeCCCCCCcch--HHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCC
Q 024325          172 RVSLKRVCLLIDTKWGVKPRD--HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS  249 (269)
Q Consensus       172 ~~~~d~vl~vid~~~~~~~~~--~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~  249 (269)
                      ..++|.+++|+|+..+....+  .+++......++|.++|+||+|+.++.+.....+.+.+.+..   .+.+++.+||++
T Consensus        84 ~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~---~g~~v~~~sa~~  160 (307)
T 1t9h_A           84 ICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRN---IGYDVYLTSSKD  160 (307)
T ss_dssp             EECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHH---HTCCEEECCHHH
T ss_pred             HHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHh---CCCeEEEEecCC
Confidence            456999999999985544443  123333345689999999999999875421112222232222   247899999999


Q ss_pred             CCCHHHHHHHH
Q 024325          250 GAGIRSLRTVL  260 (269)
Q Consensus       250 g~gi~~L~~~i  260 (269)
                      |.|+++|++.+
T Consensus       161 ~~g~~~L~~~~  171 (307)
T 1t9h_A          161 QDSLADIIPHF  171 (307)
T ss_dssp             HTTCTTTGGGG
T ss_pred             CCCHHHHHhhc
Confidence            99999887654

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=98.23  E-value=3e-06  Score=76.12  Aligned_cols=25  Identities=24%  Similarity=0.406  Sum_probs=22.1

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcC
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..-.|+|+|++++|||||+|.|++.
T Consensus        66 ~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           66 EVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCcHHHHHHHHhhh
Confidence            4568999999999999999999863

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.17  E-value=4.9e-05  Score=68.85  Aligned_cols=25  Identities=32%  Similarity=0.434  Sum_probs=21.6

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcC
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..-.++|+|.+|||||||++.|.+.
T Consensus       292 ~GeVI~LVGpNGSGKTTLl~~LAgl  316 (503)
T 2yhs_A          292 APFVILMVGVNGVGKTTTIGKLARQ  316 (503)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCcccHHHHHHHHHHH
Confidence            4458999999999999999998763

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.15  E-value=8.9e-06  Score=70.98  Aligned_cols=83  Identities=17%  Similarity=0.165  Sum_probs=52.9

Q ss_pred             ccccceEEEEEeCCCCCCcchHH---HHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCC
Q 024325          172 RVSLKRVCLLIDTKWGVKPRDHE---LISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSK  248 (269)
Q Consensus       172 ~~~~d~vl~vid~~~~~~~~~~~---~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~  248 (269)
                      ..++|.+++| ++..+. .....   ++-.....++|.++|+||+|+.++..... .+.+...+   ...+++++++||+
T Consensus       128 ~anvD~v~iv-~a~~P~-~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~-~~~~~~~y---~~~G~~v~~~Sa~  201 (358)
T 2rcn_A          128 AANIDQIVIV-SAILPE-LSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDF-VNEQMDIY---RNIGYRVLMVSSH  201 (358)
T ss_dssp             EECCCEEEEE-EESTTT-CCHHHHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHH-HHHHHHHH---HTTTCCEEECBTT
T ss_pred             HhcCCEEEEE-EeCCCC-CCHHHHHHHHHHHHhcCCCEEEEEECccCCCchhHHH-HHHHHHHH---HhCCCcEEEEecC
Confidence            3458888866 444332 22222   23333456899999999999997653211 12222222   2346789999999


Q ss_pred             CCCCHHHHHHHH
Q 024325          249 SGAGIRSLRTVL  260 (269)
Q Consensus       249 ~g~gi~~L~~~i  260 (269)
                      +|.|+++|...+
T Consensus       202 ~~~gl~~L~~~~  213 (358)
T 2rcn_A          202 TQDGLKPLEEAL  213 (358)
T ss_dssp             TTBTHHHHHHHH
T ss_pred             CCcCHHHHHHhc
Confidence            999999998765

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.15  E-value=7.3e-07  Score=76.35  Aligned_cols=57  Identities=32%  Similarity=0.471  Sum_probs=35.3

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCC-------CceeEeeEEEeCCcEEEEcCCCCCC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-------GLTQTINFFKLGTKLCLVDLPGYGF  150 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~-------gtt~~~~~~~~~~~~~lvDtpG~~~  150 (269)
                      .-.++++|++|+|||||+|+|.+.. ...++.+.       +||+.......+ ...++||||+..
T Consensus       173 G~~~~lvG~sG~GKSTLln~L~g~~-~~~~G~I~~~~~~G~~tt~~~~~~~~~-~g~v~dtpg~~~  236 (307)
T 1t9h_A          173 DKTTVFAGQSGVGKSSLLNAISPEL-GLRTNEISEHLGRGKHTTRHVELIHTS-GGLVADTPGFSS  236 (307)
T ss_dssp             TSEEEEEESHHHHHHHHHHHHCC--------------------CCCCCEEEET-TEEEESSCSCSS
T ss_pred             CCEEEEECCCCCCHHHHHHHhcccc-cccccceeeecCCCcccccHHHHhhcC-CEEEecCCCccc
Confidence            3589999999999999999999863 22233332       355544433333 357899999865

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=98.08  E-value=6.9e-05  Score=64.03  Aligned_cols=24  Identities=25%  Similarity=0.340  Sum_probs=21.1

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .-.|+++|++|||||||++.|.+.
T Consensus       102 g~vi~lvG~nGsGKTTll~~Lagl  125 (304)
T 1rj9_A          102 GRVVLVVGVNGVGKTTTIAKLGRY  125 (304)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHH
Confidence            458999999999999999998853

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=98.06  E-value=2.4e-05  Score=70.13  Aligned_cols=117  Identities=20%  Similarity=0.150  Sum_probs=63.4

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHh-------cCcCccccCCCCCce-----------------------eEe--------e
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALT-------RQWGVVRTSDKPGLT-----------------------QTI--------N  132 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~-------~~~~~~~~s~~~gtt-----------------------~~~--------~  132 (269)
                      ....|+++|.+|+||||+...|.       |. ++..+...+..+                       .+.        .
T Consensus        99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~-kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~  177 (433)
T 2xxa_A           99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKK-KVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK  177 (433)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCC-CEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence            34578999999999999998876       33 333222211100                       000        0


Q ss_pred             EEE-eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCc-EEEEE
Q 024325          133 FFK-LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVL  210 (269)
Q Consensus       133 ~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p-~iiv~  210 (269)
                      ... .+..+.++||||.....  +...   ..+...  .....++.+++|+|+..+.  ........+.. ..+ .-+|+
T Consensus       178 ~~~~~~~D~VIIDTpG~l~~~--~~l~---~~L~~~--~~~~~p~~vllVvda~~g~--~~~~~~~~f~~-~l~i~gvVl  247 (433)
T 2xxa_A          178 EAKLKFYDVLLVDTAGRLHVD--EAMM---DEIKQV--HASINPVETLFVVDAMTGQ--DAANTAKAFNE-ALPLTGVVL  247 (433)
T ss_dssp             HHHHTTCSEEEEECCCCCTTC--HHHH---HHHHHH--HHHSCCSEEEEEEETTBCT--THHHHHHHHHH-HSCCCCEEE
T ss_pred             HHHhCCCCEEEEECCCccccc--HHHH---HHHHHH--HHhhcCcceeEEeecchhH--HHHHHHHHHhc-cCCCeEEEE
Confidence            011 25679999999975421  1111   111111  1122378899999987442  22233333332 345 34799


Q ss_pred             ecCCCCCc
Q 024325          211 TKTDTVFP  218 (269)
Q Consensus       211 NK~Dl~~~  218 (269)
                      ||+|....
T Consensus       248 nK~D~~~~  255 (433)
T 2xxa_A          248 TKVDGDAR  255 (433)
T ss_dssp             ECTTSSSC
T ss_pred             ecCCCCcc
Confidence            99998644

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=98.04  E-value=7.3e-05  Score=63.90  Aligned_cols=24  Identities=21%  Similarity=0.246  Sum_probs=20.4

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .-.|+++|++|+||||++..|.+.
T Consensus       104 ~~vi~ivG~~GsGKTTl~~~LA~~  127 (306)
T 1vma_A          104 PFVIMVVGVNGTGKTTSCGKLAKM  127 (306)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHHHH
Confidence            447899999999999999887753

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.00  E-value=0.00023  Score=61.25  Aligned_cols=25  Identities=20%  Similarity=0.347  Sum_probs=20.6

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhc
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTR  114 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~  114 (269)
                      .....|+++|++|+||||++..|.+
T Consensus       103 ~~~~vI~ivG~~G~GKTT~~~~LA~  127 (320)
T 1zu4_A          103 NRLNIFMLVGVNGTGKTTSLAKMAN  127 (320)
T ss_dssp             TSCEEEEEESSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3445799999999999999987764

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.97  E-value=1.2e-05  Score=68.62  Aligned_cols=55  Identities=33%  Similarity=0.425  Sum_probs=36.2

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCC-------ceeEeeEEEeCCcEEEEcCCCCC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG-------LTQTINFFKLGTKLCLVDLPGYG  149 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~g-------tt~~~~~~~~~~~~~lvDtpG~~  149 (269)
                      -.++++|++|||||||+|+|. .. ....+.+..       +|+..........-.++||||+.
T Consensus       166 ~i~~l~G~sG~GKSTLln~l~-~~-~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~  227 (302)
T 2yv5_A          166 FICILAGPSGVGKSSILSRLT-GE-ELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFS  227 (302)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH-SC-CCCCSCC---------CCCCEEEEEETTTEEEESSCCCS
T ss_pred             cEEEEECCCCCCHHHHHHHHH-Hh-hCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcC
Confidence            478999999999999999999 63 223333322       44443333332345789999985

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.92  E-value=6.4e-06  Score=71.86  Aligned_cols=58  Identities=34%  Similarity=0.408  Sum_probs=36.5

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCC---C----ceeEeeEEEeCCcEEEEcCCCCCC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP---G----LTQTINFFKLGTKLCLVDLPGYGF  150 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~---g----tt~~~~~~~~~~~~~lvDtpG~~~  150 (269)
                      -.++++|++|||||||+|.|++.......+.+.   |    +|.............++||||+.+
T Consensus       216 ~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e  280 (358)
T 2rcn_A          216 RISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVRE  280 (358)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHT
T ss_pred             CEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHH
Confidence            379999999999999999999973202222221   2    344444444444457899999743

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.87  E-value=1.2e-05  Score=68.66  Aligned_cols=57  Identities=35%  Similarity=0.442  Sum_probs=35.4

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCC-------CceeEeeEEEeCCcEEEEcCCCCCC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-------GLTQTINFFKLGTKLCLVDLPGYGF  150 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~-------gtt~~~~~~~~~~~~~lvDtpG~~~  150 (269)
                      -.++++|++|||||||+|.|.+... ...+.+.       .+|+..........-.++|+||+..
T Consensus       170 eiv~l~G~sG~GKSTll~~l~g~~~-~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~  233 (301)
T 1u0l_A          170 KISTMAGLSGVGKSSLLNAINPGLK-LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFAN  233 (301)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTCC-CC-------------CCCSCCEEECTTSCEEESSCSSTT
T ss_pred             CeEEEECCCCCcHHHHHHHhccccc-ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCc
Confidence            4789999999999999999998632 2222222       2333333332223357899999754

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.84  E-value=0.00034  Score=62.42  Aligned_cols=23  Identities=17%  Similarity=0.130  Sum_probs=19.6

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhc
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTR  114 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~  114 (269)
                      ...|+++|++|+||||++..|.+
T Consensus        98 ~~vi~i~G~~GsGKTT~~~~LA~  120 (425)
T 2ffh_A           98 RNLWFLVGLQGSGKTTTAAKLAL  120 (425)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            44788999999999999988764

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.74  E-value=1.6e-05  Score=63.49  Aligned_cols=47  Identities=23%  Similarity=0.154  Sum_probs=32.0

Q ss_pred             CCCCCCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee
Q 024325           86 SFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN  132 (269)
Q Consensus        86 ~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~  132 (269)
                      .++......|+|+|++|||||||+++|++..........+.||+...
T Consensus        13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~   59 (197)
T 3ney_A           13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPR   59 (197)
T ss_dssp             ---CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCC
T ss_pred             cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCc
Confidence            34444456799999999999999999998642134455566776653

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=97.72  E-value=0.00058  Score=57.97  Aligned_cols=23  Identities=17%  Similarity=0.130  Sum_probs=19.8

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhc
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTR  114 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~  114 (269)
                      .-.++++|++|+||||++..|.+
T Consensus        98 ~~~i~i~g~~G~GKTT~~~~la~  120 (295)
T 1ls1_A           98 RNLWFLVGLQGSGKTTTAAKLAL  120 (295)
T ss_dssp             SEEEEEECCTTTTHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            44788999999999999988765

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.58  E-value=0.00017  Score=61.39  Aligned_cols=23  Identities=26%  Similarity=0.382  Sum_probs=20.2

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhc
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTR  114 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~  114 (269)
                      ...|+++|++|+||||++..|.+
T Consensus       105 g~vi~lvG~~GsGKTTl~~~LA~  127 (296)
T 2px0_A          105 SKYIVLFGSTGAGKTTTLAKLAA  127 (296)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999988764

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=97.26  E-value=0.00082  Score=60.16  Aligned_cols=24  Identities=21%  Similarity=0.373  Sum_probs=20.6

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHh
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALT  113 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~  113 (269)
                      .....|+|+|.+++|||+|+|.|+
T Consensus        65 ~~v~vvsv~G~~~~gks~l~N~ll   88 (457)
T 4ido_A           65 KEVVAVSVAGAFRKGKSFLMDFML   88 (457)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred             CceEEEEEECCCCCchhHHHHHHH
Confidence            345689999999999999999765

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.25  E-value=0.00016  Score=56.62  Aligned_cols=23  Identities=22%  Similarity=0.450  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..++++|++|||||||++.|.+.
T Consensus         6 ~~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            6 KTLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            47999999999999999999875

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.18  E-value=0.00019  Score=56.31  Aligned_cols=23  Identities=22%  Similarity=0.566  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCc
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      +++++|++|||||||++.|++..
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l   24 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999999863

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.13  E-value=0.00019  Score=57.20  Aligned_cols=23  Identities=30%  Similarity=0.566  Sum_probs=20.9

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..++|+|++|||||||++.|.+.
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~~   27 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQE   27 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            36899999999999999999875

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.13  E-value=0.00019  Score=56.79  Aligned_cols=36  Identities=28%  Similarity=0.320  Sum_probs=25.5

Q ss_pred             EEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeE
Q 024325           95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT  130 (269)
Q Consensus        95 v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~  130 (269)
                      |+|+|++|||||||++.|+......+.-..+-||+.
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~   39 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRT   39 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSC
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccC
Confidence            789999999999999999876321222334446654

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=97.11  E-value=0.0049  Score=48.64  Aligned_cols=65  Identities=9%  Similarity=-0.039  Sum_probs=42.7

Q ss_pred             CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhh-----CCcEEEEEe
Q 024325          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS-----QTKYQVVLT  211 (269)
Q Consensus       137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~-----~~p~iiv~N  211 (269)
                      .+.+.++|||+....        .......       .+|.+++++.++... ..-..+++.+...     +.++.+|+|
T Consensus        75 ~yD~viiD~~~~~~~--------~~~~~l~-------~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N  138 (206)
T 4dzz_A           75 DYDFAIVDGAGSLSV--------ITSAAVM-------VSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLIT  138 (206)
T ss_dssp             TSSEEEEECCSSSSH--------HHHHHHH-------HCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEEC
T ss_pred             CCCEEEEECCCCCCH--------HHHHHHH-------HCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEe
Confidence            467999999986421        0011111       189999999887544 4445666666644     357899999


Q ss_pred             cCCCCC
Q 024325          212 KTDTVF  217 (269)
Q Consensus       212 K~Dl~~  217 (269)
                      ++|...
T Consensus       139 ~~~~~~  144 (206)
T 4dzz_A          139 RKIEMA  144 (206)
T ss_dssp             SBCTTE
T ss_pred             ccCCCc
Confidence            999643

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.07  E-value=0.00035  Score=56.03  Aligned_cols=25  Identities=28%  Similarity=0.295  Sum_probs=22.2

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCc
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      ...|+++|++|||||||++.|.+..
T Consensus         8 g~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            8 GLLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhhC
Confidence            4579999999999999999999874

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.02  E-value=0.0004  Score=55.15  Aligned_cols=23  Identities=26%  Similarity=0.410  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..++++|++|||||||++.|.+.
T Consensus         8 ~ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            8 NLFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECcCCCCHHHHHHHHHhh
Confidence            47999999999999999999886

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.01  E-value=0.00033  Score=56.11  Aligned_cols=23  Identities=30%  Similarity=0.550  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      -.++++|++|||||||++.|.+.
T Consensus        21 ei~~l~GpnGsGKSTLl~~l~gl   43 (207)
T 1znw_A           21 RVVVLSGPSAVGKSTVVRCLRER   43 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            47999999999999999999986

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=96.96  E-value=0.00042  Score=55.48  Aligned_cols=25  Identities=28%  Similarity=0.420  Sum_probs=22.4

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcC
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ....|+|+|++|||||||++.|.+.
T Consensus        21 ~g~~v~I~G~sGsGKSTl~~~l~~~   45 (208)
T 3c8u_A           21 GRQLVALSGAPGSGKSTLSNPLAAA   45 (208)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3458999999999999999999886

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=96.93  E-value=0.00044  Score=56.71  Aligned_cols=24  Identities=33%  Similarity=0.347  Sum_probs=21.8

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      -.++++|++|||||||++.|.|-.
T Consensus        32 e~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           32 EFVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCC
Confidence            379999999999999999999863

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=96.93  E-value=0.0005  Score=53.94  Aligned_cols=24  Identities=25%  Similarity=0.350  Sum_probs=21.6

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ...++++|++|||||||++.|.+.
T Consensus         9 g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            9 GNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhc
Confidence            347999999999999999999886

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=96.92  E-value=0.0004  Score=56.21  Aligned_cols=23  Identities=26%  Similarity=0.507  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      -.++|+|++|||||||++.|.+.
T Consensus        24 ~~~~lvGpsGsGKSTLl~~L~g~   46 (218)
T 1z6g_A           24 YPLVICGPSGVGKGTLIKKLLNE   46 (218)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            36899999999999999999986

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=96.91  E-value=0.00053  Score=55.63  Aligned_cols=25  Identities=28%  Similarity=0.275  Sum_probs=22.2

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCc
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      .-.++++|++|||||||++.|++..
T Consensus        16 G~ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           16 GTLYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccC
Confidence            3479999999999999999999863

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=96.87  E-value=0.00052  Score=55.87  Aligned_cols=23  Identities=30%  Similarity=0.361  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      -.++++|+.|||||||++.|.|-
T Consensus        31 e~~~iiG~nGsGKSTLl~~l~Gl   53 (224)
T 2pcj_A           31 EFVSIIGASGSGKSTLLYILGLL   53 (224)
T ss_dssp             CEEEEEECTTSCHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            36999999999999999999986

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=96.81  E-value=0.00065  Score=55.89  Aligned_cols=22  Identities=23%  Similarity=0.329  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .++++|+.|||||||++.|.|-
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl   47 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6999999999999999999986

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=96.81  E-value=0.00065  Score=55.79  Aligned_cols=24  Identities=38%  Similarity=0.526  Sum_probs=21.8

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      -.++++|++|||||||++.|+|-.
T Consensus        32 e~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           32 ALVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            379999999999999999999873

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.80  E-value=0.00075  Score=52.69  Aligned_cols=24  Identities=38%  Similarity=0.639  Sum_probs=22.0

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .+.++++|++|+|||||++.|++.
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHh
Confidence            578999999999999999999875

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=96.80  E-value=0.00065  Score=54.30  Aligned_cols=24  Identities=33%  Similarity=0.452  Sum_probs=21.7

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ...|+++|++|||||||++.|.+.
T Consensus         6 ~~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            6 PFVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999999885

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=96.79  E-value=0.00066  Score=52.64  Aligned_cols=23  Identities=22%  Similarity=0.330  Sum_probs=19.9

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      -.++++|++|||||||++.+.+.
T Consensus        10 ei~~l~G~nGsGKSTl~~~~~~~   32 (171)
T 4gp7_A           10 SLVVLIGSSGSGKSTFAKKHFKP   32 (171)
T ss_dssp             EEEEEECCTTSCHHHHHHHHSCG
T ss_pred             EEEEEECCCCCCHHHHHHHHccC
Confidence            36899999999999999986653

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=96.79  E-value=0.00066  Score=57.05  Aligned_cols=23  Identities=26%  Similarity=0.404  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      -.++++|+.|||||||++.|.|-
T Consensus        35 e~~~iiGpnGsGKSTLl~~l~Gl   57 (275)
T 3gfo_A           35 EVTAILGGNGVGKSTLFQNFNGI   57 (275)
T ss_dssp             SEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHcC
Confidence            36999999999999999999986

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=96.78  E-value=0.0007  Score=51.99  Aligned_cols=23  Identities=13%  Similarity=0.289  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      -.++++|+.|||||||++.|.+.
T Consensus        34 e~v~L~G~nGaGKTTLlr~l~g~   56 (158)
T 1htw_A           34 IMVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            47999999999999999999886

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=96.78  E-value=0.00069  Score=56.51  Aligned_cols=24  Identities=29%  Similarity=0.346  Sum_probs=21.7

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      -.++++|+.|||||||++.|.|-.
T Consensus        33 e~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           33 DVISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            369999999999999999999863

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=96.77  E-value=0.00069  Score=56.65  Aligned_cols=23  Identities=35%  Similarity=0.486  Sum_probs=21.4

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      -.++++|+.|||||||++.|.|-
T Consensus        38 e~~~liG~nGsGKSTLl~~l~Gl   60 (266)
T 4g1u_C           38 EMVAIIGPNGAGKSTLLRLLTGY   60 (266)
T ss_dssp             CEEEEECCTTSCHHHHHHHHTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhcC
Confidence            37999999999999999999986

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=96.77  E-value=0.0007  Score=56.27  Aligned_cols=23  Identities=26%  Similarity=0.385  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      -.++++|+.|||||||++.|.|-
T Consensus        34 e~~~liG~nGsGKSTLlk~l~Gl   56 (257)
T 1g6h_A           34 DVTLIIGPNGSGKSTLINVITGF   56 (257)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            37999999999999999999986

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=96.77  E-value=0.0007  Score=55.77  Aligned_cols=23  Identities=48%  Similarity=0.612  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      -.++++|+.|||||||++.|.|-
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~Gl   51 (243)
T 1mv5_A           29 SIIAFAGPSGGGKSTIFSLLERF   51 (243)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            37999999999999999999986

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=96.76  E-value=0.00072  Score=55.86  Aligned_cols=24  Identities=33%  Similarity=0.552  Sum_probs=21.7

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      -.++++|+.|||||||++.|+|-.
T Consensus        36 e~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           36 EVIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            379999999999999999999863

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=96.75  E-value=0.0007  Score=54.72  Aligned_cols=22  Identities=23%  Similarity=0.616  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .++++|+.|||||||++.|+|-
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl   58 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTY   58 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999986

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=96.75  E-value=0.00075  Score=55.08  Aligned_cols=24  Identities=29%  Similarity=0.455  Sum_probs=21.8

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      -.++++|+.|||||||++.|+|-.
T Consensus        35 e~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           35 QLLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            379999999999999999999873

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.73  E-value=0.00079  Score=55.35  Aligned_cols=23  Identities=22%  Similarity=0.397  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCc
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      .++++|+.|||||||++.|.|-.
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            69999999999999999999863

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.72  E-value=0.00077  Score=56.19  Aligned_cols=23  Identities=22%  Similarity=0.326  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      -.++++|++|||||||++.|.+.
T Consensus        26 ~~v~i~Gp~GsGKSTll~~l~g~   48 (261)
T 2eyu_A           26 GLILVTGPTGSGKSTTIASMIDY   48 (261)
T ss_dssp             EEEEEECSTTCSHHHHHHHHHHH
T ss_pred             CEEEEECCCCccHHHHHHHHHHh
Confidence            37999999999999999999875

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.72  E-value=0.00067  Score=54.55  Aligned_cols=22  Identities=23%  Similarity=0.128  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .++++|+.|||||||++.|.|.
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999999885

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=96.71  E-value=0.00081  Score=56.10  Aligned_cols=24  Identities=29%  Similarity=0.331  Sum_probs=21.7

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      -.++++|+.|||||||++.|.|-.
T Consensus        51 ei~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           51 EVVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEEcCCCCcHHHHHHHHHcCC
Confidence            379999999999999999999863

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=96.71  E-value=0.00099  Score=52.83  Aligned_cols=24  Identities=25%  Similarity=0.315  Sum_probs=21.6

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ...|+++|++||||||+++.|.+.
T Consensus         6 g~~i~l~G~~GsGKSTl~~~L~~~   29 (207)
T 2j41_A            6 GLLIVLSGPSGVGKGTVRKRIFED   29 (207)
T ss_dssp             CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            347999999999999999999876

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.70  E-value=0.00084  Score=55.80  Aligned_cols=23  Identities=17%  Similarity=0.361  Sum_probs=21.4

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      -.++++|+.|||||||++.|+|-
T Consensus        42 ei~~l~G~NGsGKSTLlk~l~Gl   64 (256)
T 1vpl_A           42 EIFGLIGPNGAGKTTTLRIISTL   64 (256)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTS
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            37999999999999999999986

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=96.70  E-value=0.00095  Score=53.02  Aligned_cols=24  Identities=17%  Similarity=0.371  Sum_probs=21.5

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ...|+++|++|||||||++.|.+.
T Consensus        29 g~~i~l~G~~GsGKSTl~~~L~~~   52 (200)
T 4eun_A           29 TRHVVVMGVSGSGKTTIAHGVADE   52 (200)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHh
Confidence            457999999999999999999875

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=96.70  E-value=0.00087  Score=55.45  Aligned_cols=22  Identities=27%  Similarity=0.351  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .++++|+.|||||||++.|.|-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6999999999999999999995

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=96.70  E-value=0.00085  Score=55.87  Aligned_cols=23  Identities=30%  Similarity=0.437  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      -.++++|+.|||||||++.|.|-
T Consensus        47 e~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           47 TTCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcc
Confidence            37999999999999999999986

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=96.70  E-value=0.00085  Score=55.51  Aligned_cols=23  Identities=22%  Similarity=0.375  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCc
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      .++++|+.|||||||++.|.|-.
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            69999999999999999999873

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=96.68  E-value=0.00088  Score=51.61  Aligned_cols=23  Identities=30%  Similarity=0.423  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..|+++|++||||||+.+.|.+.
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999999876

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.68  E-value=0.00092  Score=55.90  Aligned_cols=23  Identities=26%  Similarity=0.345  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      -.++++|+.|||||||++.|+|-
T Consensus        47 e~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           47 EVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            37999999999999999999995

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.67  E-value=0.0009  Score=56.08  Aligned_cols=24  Identities=25%  Similarity=0.371  Sum_probs=21.8

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      -.++++|+.|||||||++.|+|-.
T Consensus        46 e~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           46 KVTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            379999999999999999999863

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=96.65  E-value=0.00096  Score=56.16  Aligned_cols=24  Identities=25%  Similarity=0.335  Sum_probs=21.7

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      -.++++|+.|||||||++.|+|-.
T Consensus        48 e~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           48 DKWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            369999999999999999999863

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=96.64  E-value=0.0012  Score=51.00  Aligned_cols=24  Identities=25%  Similarity=0.297  Sum_probs=21.2

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ...|+++|++||||||+.+.|.+.
T Consensus         8 g~~i~l~G~~GsGKSTl~~~l~~~   31 (175)
T 1knq_A            8 HHIYVLMGVSGSGKSAVASEVAHQ   31 (175)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHh
Confidence            457999999999999999998764

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.64  E-value=0.0011  Score=56.51  Aligned_cols=24  Identities=38%  Similarity=0.466  Sum_probs=21.3

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .-.++|+|++|+|||||++.|.+-
T Consensus       126 Ge~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          126 KNCLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhhh
Confidence            347999999999999999999864

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.63  E-value=0.00099  Score=55.25  Aligned_cols=23  Identities=30%  Similarity=0.452  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCc
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      .++++|+.|||||||++.|.|-.
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            69999999999999999999873

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.63  E-value=0.001  Score=55.57  Aligned_cols=23  Identities=26%  Similarity=0.413  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      -.++++|+.|||||||++.|.|-
T Consensus        34 e~~~liG~nGsGKSTLl~~i~Gl   56 (266)
T 2yz2_A           34 ECLLVAGNTGSGKSTLLQIVAGL   56 (266)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Confidence            37999999999999999999986

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.61  E-value=0.0089  Score=53.41  Aligned_cols=23  Identities=17%  Similarity=0.329  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .-|++.|+||+|||+|..++.+.
T Consensus       216 rGvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          216 KGVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            46999999999999999999987

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=96.59  E-value=0.0011  Score=51.98  Aligned_cols=22  Identities=32%  Similarity=0.398  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .++++|++|||||||++.|.+.
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~~   25 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAAQ   25 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhcc
Confidence            5899999999999999999863

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.57  E-value=0.00055  Score=53.31  Aligned_cols=23  Identities=17%  Similarity=0.400  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..++|+|++|||||||++.|.+.
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999986

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=96.56  E-value=0.0011  Score=52.71  Aligned_cols=24  Identities=25%  Similarity=0.623  Sum_probs=21.3

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ...|+++|++|||||||.+.|...
T Consensus        12 ~~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           12 IPPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            356899999999999999999875

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.55  E-value=0.001  Score=54.06  Aligned_cols=24  Identities=25%  Similarity=0.333  Sum_probs=16.3

Q ss_pred             CcEEEEEcCCCCChHHHHHHHh-cC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALT-RQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~-~~  115 (269)
                      ...++++|++|||||||++.|. +.
T Consensus        27 G~ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           27 GVILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             CCEEEEECSCC----CHHHHHHC--
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcC
Confidence            3479999999999999999999 75

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=96.53  E-value=0.0016  Score=53.54  Aligned_cols=21  Identities=14%  Similarity=0.287  Sum_probs=20.0

Q ss_pred             cEEEEEcCCCCChHHHHHHHh
Q 024325           93 PEIAFAGRSNVGKSSMLNALT  113 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~  113 (269)
                      ..|+++|++|||||||++.|.
T Consensus        28 ~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999999

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.52  E-value=0.0008  Score=57.40  Aligned_cols=25  Identities=36%  Similarity=0.509  Sum_probs=22.3

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCc
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      .-.++++|++|||||||++.|++-.
T Consensus        80 Ge~vaivG~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           80 GQTLALVGPSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             TCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCchHHHHHHHHHcCC
Confidence            3479999999999999999999863

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=96.52  E-value=0.0011  Score=52.45  Aligned_cols=22  Identities=18%  Similarity=0.487  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .++++|++|+|||||++.|.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            5899999999999999999886

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.51  E-value=0.0013  Score=54.77  Aligned_cols=23  Identities=22%  Similarity=0.476  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      -.++++|+.|||||||++.|.|-
T Consensus        31 e~~~i~G~NGsGKSTLlk~l~Gl   53 (263)
T 2pjz_A           31 EKVIILGPNGSGKTTLLRAISGL   53 (263)
T ss_dssp             SEEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCC
Confidence            37999999999999999999986

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.50  E-value=0.0015  Score=51.84  Aligned_cols=24  Identities=33%  Similarity=0.257  Sum_probs=21.6

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ...|+++|++|||||||.+.|.+.
T Consensus        25 g~~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           25 GCVIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999999876

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.50  E-value=0.0015  Score=50.06  Aligned_cols=20  Identities=30%  Similarity=0.381  Sum_probs=18.8

Q ss_pred             cEEEEEcCCCCChHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNAL  112 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l  112 (269)
                      +.|++.|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            47999999999999999999

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.49  E-value=0.0015  Score=55.96  Aligned_cols=26  Identities=35%  Similarity=0.326  Sum_probs=22.8

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcC
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .....|+|+|++|||||||++.|.+.
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~gl  113 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQAL  113 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHhh
Confidence            34568999999999999999999885

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.44  E-value=0.0011  Score=56.77  Aligned_cols=24  Identities=17%  Similarity=0.368  Sum_probs=22.0

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .+.++++|+.|||||||+|.|.+.
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhh
Confidence            578999999999999999999965

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.44  E-value=0.013  Score=48.23  Aligned_cols=25  Identities=20%  Similarity=0.365  Sum_probs=21.8

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcC
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ....|+++|+|||||||+.+.|...
T Consensus        31 ~~~~i~l~G~~GsGKSTla~~L~~~   55 (253)
T 2p5t_B           31 QPIAILLGGQSGAGKTTIHRIKQKE   55 (253)
T ss_dssp             SCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHh
Confidence            3457999999999999999999875

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.44  E-value=0.0016  Score=52.42  Aligned_cols=23  Identities=30%  Similarity=0.569  Sum_probs=20.9

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..|+++|++||||||+.+.|.+.
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~~   28 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAEA   28 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999998764

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.43  E-value=0.0015  Score=55.22  Aligned_cols=25  Identities=28%  Similarity=0.379  Sum_probs=22.2

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCc
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      .-.++++|+.|||||||++.|.|-.
T Consensus        64 Ge~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           64 GQLLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCC
Confidence            3479999999999999999999873

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.41  E-value=0.0017  Score=49.68  Aligned_cols=22  Identities=23%  Similarity=0.276  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .|++.|.+||||||+.+.|...
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999765

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=96.41  E-value=0.01  Score=47.41  Aligned_cols=66  Identities=8%  Similarity=-0.038  Sum_probs=41.1

Q ss_pred             CCcEEEEcCCCC-CCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhh-CCcEEEEEecCC
Q 024325          137 GTKLCLVDLPGY-GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS-QTKYQVVLTKTD  214 (269)
Q Consensus       137 ~~~~~lvDtpG~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~-~~p~iiv~NK~D  214 (269)
                      .+.+.++|||+. .....        .    ..+   ..+|.+++++.++...-.....+++.+... +.++.+|+|++|
T Consensus        67 ~yD~viiD~p~~~~~~~~--------~----~~l---~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~  131 (209)
T 3cwq_A           67 KYQNIVIDTQARPEDEDL--------E----ALA---DGCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIP  131 (209)
T ss_dssp             GCSEEEEEEECCCSSSHH--------H----HHH---HTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBC
T ss_pred             cCCEEEEeCCCCcCcHHH--------H----HHH---HHCCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecC
Confidence            467999999986 43210        1    111   128999999987531111223555666653 678889999999


Q ss_pred             CCC
Q 024325          215 TVF  217 (269)
Q Consensus       215 l~~  217 (269)
                      ...
T Consensus       132 ~~~  134 (209)
T 3cwq_A          132 PYP  134 (209)
T ss_dssp             CTT
T ss_pred             Ccc
Confidence            764

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.40  E-value=0.0015  Score=56.86  Aligned_cols=22  Identities=27%  Similarity=0.379  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .|+++|++|||||||+++|++.
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g~  146 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLDY  146 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            7999999999999999999875

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=96.37  E-value=0.0018  Score=56.52  Aligned_cols=24  Identities=21%  Similarity=0.266  Sum_probs=21.7

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      -.++++|++|||||||++.|.+-.
T Consensus        55 ei~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           55 QIYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEEcCCCchHHHHHHHHhcCC
Confidence            479999999999999999999863

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.37  E-value=0.0019  Score=52.99  Aligned_cols=24  Identities=21%  Similarity=0.248  Sum_probs=21.4

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ...|+++|+.|||||||++.|.+.
T Consensus        25 g~iigI~G~~GsGKSTl~k~L~~~   48 (245)
T 2jeo_A           25 PFLIGVSGGTASGKSTVCEKIMEL   48 (245)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999998874

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.36  E-value=0.0017  Score=52.23  Aligned_cols=23  Identities=17%  Similarity=0.218  Sum_probs=20.9

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      -.++++|++|||||||++.|++.
T Consensus        26 ~~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           26 AITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            36999999999999999999874

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.36  E-value=0.0018  Score=56.39  Aligned_cols=24  Identities=25%  Similarity=0.324  Sum_probs=21.6

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      -.++++|++|||||||++.|.|-.
T Consensus        31 e~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           31 EILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCchHHHHHHHHhcCC
Confidence            368999999999999999999863

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.36  E-value=0.0016  Score=56.14  Aligned_cols=22  Identities=14%  Similarity=0.419  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .++++|++|||||||++.|.+.
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~  194 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEF  194 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGG
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6999999999999999999986

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.35  E-value=0.0016  Score=50.57  Aligned_cols=24  Identities=25%  Similarity=0.391  Sum_probs=21.5

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ...++++|++|+|||||++++.+.
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            347999999999999999999876

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.34  E-value=0.0022  Score=49.73  Aligned_cols=24  Identities=13%  Similarity=0.289  Sum_probs=21.4

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .+.++++|++|+|||||++.|...
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~   27 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAA   27 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHh
Confidence            468999999999999999998864

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.34  E-value=0.0019  Score=48.93  Aligned_cols=24  Identities=33%  Similarity=0.288  Sum_probs=21.7

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ...++++|++|+|||||++++.+.
T Consensus        36 g~~~~l~G~~G~GKTtL~~~i~~~   59 (149)
T 2kjq_A           36 GQFIYVWGEEGAGKSHLLQAWVAQ   59 (149)
T ss_dssp             CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            347999999999999999999986

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.34  E-value=0.0017  Score=56.77  Aligned_cols=23  Identities=30%  Similarity=0.566  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCc
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      .++++|++|||||||+++|++..
T Consensus       177 ~i~ivG~sGsGKSTll~~l~~~~  199 (361)
T 2gza_A          177 VIVVAGETGSGKTTLMKALMQEI  199 (361)
T ss_dssp             CEEEEESSSSCHHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            69999999999999999999863

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=96.32  E-value=0.0023  Score=50.70  Aligned_cols=24  Identities=25%  Similarity=0.456  Sum_probs=21.4

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ...|+++|++||||||+.+.|.+.
T Consensus        25 ~~~i~l~G~~GsGKsTl~~~La~~   48 (199)
T 3vaa_A           25 MVRIFLTGYMGAGKTTLGKAFARK   48 (199)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHH
Confidence            358999999999999999999865

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.31  E-value=0.0021  Score=55.98  Aligned_cols=23  Identities=22%  Similarity=0.358  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCc
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      .++++|++|||||||++.|.|-.
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            69999999999999999999863

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.31  E-value=0.0022  Score=50.79  Aligned_cols=23  Identities=35%  Similarity=0.387  Sum_probs=20.9

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..|+++|.+||||||+.+.|.+.
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999765

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.30  E-value=0.0057  Score=51.58  Aligned_cols=24  Identities=21%  Similarity=0.391  Sum_probs=21.1

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ...|++.|++||||||+.+.|...
T Consensus        33 ~~livl~G~sGsGKSTla~~L~~~   56 (287)
T 1gvn_B           33 PTAFLLGGQPGSGKTSLRSAIFEE   56 (287)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999999764

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.30  E-value=0.022  Score=52.06  Aligned_cols=24  Identities=13%  Similarity=0.356  Sum_probs=21.7

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ...++|.|++|+||||++.++...
T Consensus        77 ~~~lLL~GppGtGKTtla~~la~~  100 (516)
T 1sxj_A           77 FRAAMLYGPPGIGKTTAAHLVAQE  100 (516)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            358999999999999999999876

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=96.29  E-value=0.0022  Score=57.96  Aligned_cols=24  Identities=29%  Similarity=0.321  Sum_probs=21.5

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ...|+++|.+|+||||+.+.|...
T Consensus        39 ~~~IvlvGlpGsGKSTia~~La~~   62 (469)
T 1bif_A           39 PTLIVMVGLPARGKTYISKKLTRY   62 (469)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999999865

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.28  E-value=0.0022  Score=50.85  Aligned_cols=22  Identities=23%  Similarity=0.433  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCChHHHHHHHhc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTR  114 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~  114 (269)
                      ..|+++|.+||||||+.+.|.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3699999999999999999987

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.27  E-value=0.017  Score=51.02  Aligned_cols=22  Identities=18%  Similarity=0.388  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      -|.+.|+||+|||+|..++.+.
T Consensus       184 GvLL~GPPGTGKTllAkAiA~e  205 (405)
T 4b4t_J          184 GVILYGPPGTGKTLLARAVAHH  205 (405)
T ss_dssp             CEEEESCSSSSHHHHHHHHHHH
T ss_pred             ceEEeCCCCCCHHHHHHHHHHh
Confidence            4899999999999999999987

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.27  E-value=0.0022  Score=55.86  Aligned_cols=23  Identities=30%  Similarity=0.355  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      -.++++|++|||||||++.|.|-
T Consensus        30 e~~~llGpnGsGKSTLLr~iaGl   52 (359)
T 2yyz_A           30 EFVALLGPSGCGKTTTLLMLAGI   52 (359)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CEEEEEcCCCchHHHHHHHHHCC
Confidence            36899999999999999999986

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.26  E-value=0.0023  Score=56.23  Aligned_cols=23  Identities=30%  Similarity=0.452  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCc
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      .++++|++|||||||++.|.|-.
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHcCC
Confidence            68999999999999999999863

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.26  E-value=0.0027  Score=50.49  Aligned_cols=24  Identities=25%  Similarity=0.425  Sum_probs=21.8

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ...|+++|.+||||||+.+.|.+.
T Consensus        21 ~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           21 TFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHh
Confidence            357999999999999999999886

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.25  E-value=0.0023  Score=55.83  Aligned_cols=23  Identities=30%  Similarity=0.482  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCc
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      .++++|++|||||||++.|.|-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            68999999999999999999863

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.24  E-value=0.0024  Score=50.72  Aligned_cols=22  Identities=23%  Similarity=0.372  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCCChHHHHHHHhc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTR  114 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~  114 (269)
                      ..|+++|++||||||+.+.|.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999999976

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.24  E-value=0.0034  Score=49.05  Aligned_cols=25  Identities=24%  Similarity=0.365  Sum_probs=21.9

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcC
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..+.|+++|.+||||||+.+.|...
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            3468999999999999999998765

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.22  E-value=0.0024  Score=55.92  Aligned_cols=23  Identities=22%  Similarity=0.280  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCc
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      .++++|++|||||||++.|.|-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCcHHHHHHHHHHcCC
Confidence            68999999999999999999863

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.22  E-value=0.0022  Score=56.22  Aligned_cols=23  Identities=22%  Similarity=0.326  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      -.++++|++|||||||++.|++.
T Consensus       137 ~~i~ivG~~GsGKTTll~~l~~~  159 (372)
T 2ewv_A          137 GLILVTGPTGSGKSTTIASMIDY  159 (372)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            37999999999999999999875

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.20  E-value=0.0032  Score=52.02  Aligned_cols=22  Identities=36%  Similarity=0.578  Sum_probs=20.5

Q ss_pred             CcEEEEEcCCCCChHHHHHHHh
Q 024325           92 LPEIAFAGRSNVGKSSMLNALT  113 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~  113 (269)
                      ...|+|+|++||||||+++.|.
T Consensus        27 g~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           27 APVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            4589999999999999999998

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.20  E-value=0.0025  Score=55.78  Aligned_cols=24  Identities=21%  Similarity=0.278  Sum_probs=21.6

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      -.++++|++|||||||++.|.|-.
T Consensus        38 e~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           38 EFLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCChHHHHHHHHHcCC
Confidence            368999999999999999999863

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.19  E-value=0.0047  Score=52.52  Aligned_cols=25  Identities=24%  Similarity=0.344  Sum_probs=21.5

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcC
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..-.++++|++|||||||++.|.+.
T Consensus        99 ~g~vi~lvG~nGsGKTTll~~Lag~  123 (302)
T 3b9q_A           99 KPAVIMIVGVNGGGKTTSLGKLAHR  123 (302)
T ss_dssp             SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            3457999999999999999998864

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=96.18  E-value=0.037  Score=47.26  Aligned_cols=25  Identities=8%  Similarity=0.090  Sum_probs=22.2

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcC
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..+.+.+.|+||+|||++++.++..
T Consensus        44 ~~~~lli~GpPGTGKT~~v~~v~~~   68 (318)
T 3te6_A           44 QNKLFYITNADDSTKFQLVNDVMDE   68 (318)
T ss_dssp             CCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            3568999999999999999998875

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.17  E-value=0.0034  Score=49.85  Aligned_cols=25  Identities=24%  Similarity=0.383  Sum_probs=21.8

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcC
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ....|+++|.+|||||||++.|.+.
T Consensus        21 ~~~~i~i~G~~GsGKstl~~~l~~~   45 (201)
T 1rz3_A           21 GRLVLGIDGLSRSGKTTLANQLSQT   45 (201)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3458999999999999999998864

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.15  E-value=0.003  Score=48.69  Aligned_cols=21  Identities=24%  Similarity=0.219  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 024325           94 EIAFAGRSNVGKSSMLNALTR  114 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~  114 (269)
                      .|++.|.|||||||+.+.|..
T Consensus         4 ~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            4 IILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEecCCCCCHHHHHHHHHh
Confidence            689999999999999999987

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.14  E-value=0.003  Score=53.80  Aligned_cols=25  Identities=32%  Similarity=0.255  Sum_probs=22.1

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcC
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ....|+|+|++|||||||++.|.+.
T Consensus        79 ~g~iigI~G~~GsGKSTl~~~L~~~  103 (308)
T 1sq5_A           79 IPYIISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3458999999999999999999875

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.14  E-value=0.0021  Score=56.15  Aligned_cols=25  Identities=28%  Similarity=0.457  Sum_probs=22.3

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCc
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      .-+++|+|++|||||||++.|.+..
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~  194 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVF  194 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHh
Confidence            3479999999999999999999864

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.13  E-value=0.0026  Score=56.62  Aligned_cols=22  Identities=32%  Similarity=0.347  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .++|+|++|||||||+++|++.
T Consensus       169 ii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHhh
Confidence            6999999999999999999875

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.11  E-value=0.0038  Score=48.18  Aligned_cols=23  Identities=30%  Similarity=0.445  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..|++.|.+||||||+.+.|...
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999999875

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.11  E-value=0.0031  Score=49.73  Aligned_cols=22  Identities=27%  Similarity=0.520  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .|++.|.+||||||+.+.|...
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~   23 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKK   23 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHh
Confidence            5899999999999999999875

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.10  E-value=0.031  Score=49.57  Aligned_cols=25  Identities=16%  Similarity=0.220  Sum_probs=21.8

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcC
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ....|+++|.+||||||+.+.|...
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            3457899999999999999999875

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.10  E-value=0.0027  Score=58.05  Aligned_cols=22  Identities=27%  Similarity=0.400  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .++++|++|||||||+++|++.
T Consensus       262 ~i~I~GptGSGKTTlL~aL~~~  283 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIMMF  283 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5999999999999999999985

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.08  E-value=0.0037  Score=53.62  Aligned_cols=26  Identities=31%  Similarity=0.231  Sum_probs=22.1

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcC
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .....|+++|++|||||||++.|.+.
T Consensus        90 ~~p~iigI~GpsGSGKSTl~~~L~~l  115 (321)
T 3tqc_A           90 KVPYIIGIAGSVAVGKSTTSRVLKAL  115 (321)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            34468999999999999999998764

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.07  E-value=0.0043  Score=48.43  Aligned_cols=25  Identities=16%  Similarity=0.197  Sum_probs=21.8

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcC
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ....|+++|.+||||||+.+.|...
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~~   36 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLADL   36 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            3467999999999999999998765

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.06  E-value=0.0031  Score=55.55  Aligned_cols=23  Identities=35%  Similarity=0.641  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      -.++++|++|||||||++.|.|-
T Consensus        48 e~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           48 QRVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCChHHHHHHHHhCC
Confidence            37999999999999999999986

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.04  E-value=0.0021  Score=55.74  Aligned_cols=23  Identities=17%  Similarity=0.283  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCc
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      .++++|++|||||||++.|.|-.
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCccHHHHHHHHHcCC
Confidence            69999999999999999999863

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.04  E-value=0.0039  Score=52.68  Aligned_cols=25  Identities=24%  Similarity=0.126  Sum_probs=21.9

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcC
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ....|+|+|++|||||||.+.|.+.
T Consensus        30 ~~~ii~I~G~sGsGKSTla~~L~~~   54 (290)
T 1odf_A           30 CPLFIFFSGPQGSGKSFTSIQIYNH   54 (290)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3468999999999999999998765

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.03  E-value=0.004  Score=48.66  Aligned_cols=23  Identities=26%  Similarity=0.417  Sum_probs=20.7

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..|+++|.+||||||+.+.|...
T Consensus         6 ~~I~l~G~~GsGKST~~~~L~~~   28 (193)
T 2rhm_A            6 ALIIVTGHPATGKTTLSQALATG   28 (193)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999764

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.03  E-value=0.004  Score=50.57  Aligned_cols=25  Identities=20%  Similarity=0.329  Sum_probs=22.0

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcC
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ....|+|.|..|||||||++.|.+.
T Consensus        19 ~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           19 QPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhc
Confidence            3457999999999999999999875

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.03  E-value=0.0041  Score=48.34  Aligned_cols=24  Identities=29%  Similarity=0.398  Sum_probs=21.2

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .+.|+++|++||||||+.+.|...
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~   28 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKL   28 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999999764

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.02  E-value=0.0041  Score=48.44  Aligned_cols=23  Identities=13%  Similarity=0.212  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..|++.|.+||||||+.+.|...
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~~   26 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMDN   26 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999998764

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.02  E-value=0.0031  Score=56.88  Aligned_cols=25  Identities=28%  Similarity=0.478  Sum_probs=22.4

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcC
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ....++++|+.|||||||++.|+|-
T Consensus       137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          137 EGPRVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             SCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCc
Confidence            3568999999999999999999885

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.01  E-value=0.0035  Score=48.90  Aligned_cols=22  Identities=27%  Similarity=0.303  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .|++.|.+||||||+.+.|...
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~   24 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEI   24 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999865

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=95.94  E-value=0.005  Score=48.94  Aligned_cols=24  Identities=25%  Similarity=0.268  Sum_probs=21.3

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ...|++.|.+||||||+.+.|...
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~~   32 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVEA   32 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999999864

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=95.94  E-value=0.0062  Score=48.11  Aligned_cols=26  Identities=19%  Similarity=0.321  Sum_probs=22.1

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcC
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .....|++.|.+||||||+.+.|...
T Consensus        13 ~~~~~I~l~G~~GsGKsT~~~~L~~~   38 (203)
T 1ukz_A           13 DQVSVIFVLGGPGAGKGTQCEKLVKD   38 (203)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            34457999999999999999999864

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=95.93  E-value=0.07  Score=43.53  Aligned_cols=24  Identities=17%  Similarity=0.272  Sum_probs=21.3

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ...|++.|+||+|||+|..++.+.
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~~   62 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVATE   62 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            356899999999999999999875

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.92  E-value=0.03  Score=49.73  Aligned_cols=23  Identities=22%  Similarity=0.391  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .-|.+.|+||+|||+|..++.+.
T Consensus       217 rGvLLyGPPGTGKTlLAkAiA~e  239 (437)
T 4b4t_I          217 KGVILYGAPGTGKTLLAKAVANQ  239 (437)
T ss_dssp             SEEEEESSTTTTHHHHHHHHHHH
T ss_pred             CCCceECCCCchHHHHHHHHHHH
Confidence            35999999999999999999987

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=95.92  E-value=0.0036  Score=52.45  Aligned_cols=21  Identities=24%  Similarity=0.496  Sum_probs=20.2

Q ss_pred             EEEEcCCCCChHHHHHHHhcC
Q 024325           95 IAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        95 v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ++++|++|+|||||++++.+.
T Consensus        47 vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            999999999999999999986

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=95.92  E-value=0.0069  Score=52.74  Aligned_cols=25  Identities=24%  Similarity=0.344  Sum_probs=21.5

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcC
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..-.++++|++|||||||++.|.+.
T Consensus       156 ~g~vi~lvG~nGsGKTTll~~Lag~  180 (359)
T 2og2_A          156 KPAVIMIVGVNGGGKTTSLGKLAHR  180 (359)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHhh
Confidence            3447999999999999999998863

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=95.91  E-value=0.0021  Score=55.99  Aligned_cols=23  Identities=17%  Similarity=0.394  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      -.++++|++|||||||++.|.|-
T Consensus        32 e~~~llGpnGsGKSTLLr~iaGl   54 (353)
T 1oxx_K           32 ERFGILGPSGAGKTTFMRIIAGL   54 (353)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Confidence            36999999999999999999986

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=95.89  E-value=0.0055  Score=48.31  Aligned_cols=24  Identities=21%  Similarity=0.272  Sum_probs=21.6

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ...|++.|.+||||||+.+.|...
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            357999999999999999999876

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=95.86  E-value=0.0056  Score=47.91  Aligned_cols=24  Identities=17%  Similarity=0.250  Sum_probs=21.0

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ...|+++|.+||||||+.+.|...
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La~~   32 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIVQK   32 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999998754

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=95.86  E-value=0.0049  Score=47.76  Aligned_cols=24  Identities=33%  Similarity=0.645  Sum_probs=21.0

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .+.|+++|.+||||||+.+.|...
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~~   34 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELASK   34 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHHH
Confidence            357999999999999999999854

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=95.83  E-value=0.0042  Score=51.07  Aligned_cols=22  Identities=23%  Similarity=0.480  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      -++++|++|+|||||++++.+.
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3999999999999999999986

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=95.82  E-value=0.0051  Score=47.79  Aligned_cols=23  Identities=22%  Similarity=0.466  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..|+++|.+||||||+.+.|...
T Consensus         5 ~~I~l~G~~GsGKST~~~~La~~   27 (186)
T 3cm0_A            5 QAVIFLGPPGAGKGTQASRLAQE   27 (186)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999998753

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=95.82  E-value=0.007  Score=47.80  Aligned_cols=24  Identities=17%  Similarity=0.263  Sum_probs=21.1

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ...|+++|.+||||||+.+.|...
T Consensus        20 ~~~I~l~G~~GsGKST~a~~La~~   43 (201)
T 2cdn_A           20 HMRVLLLGPPGAGKGTQAVKLAEK   43 (201)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            348999999999999999998764

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=95.81  E-value=0.0045  Score=49.53  Aligned_cols=22  Identities=14%  Similarity=0.330  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      +|+|+|.+||||||+.+.|...
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEK   23 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999754

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=95.80  E-value=0.018  Score=48.53  Aligned_cols=23  Identities=22%  Similarity=0.183  Sum_probs=20.0

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..+++.|+||+|||+|..++...
T Consensus        37 ~~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           37 LILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             SEEEEEECTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            35777799999999999999876

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=95.80  E-value=0.0052  Score=47.69  Aligned_cols=21  Identities=29%  Similarity=0.306  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 024325           94 EIAFAGRSNVGKSSMLNALTR  114 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~  114 (269)
                      ..+|+|+.|+|||||+.+|..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999864

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=95.80  E-value=0.0056  Score=48.48  Aligned_cols=23  Identities=39%  Similarity=0.368  Sum_probs=20.9

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..|++.|.+||||||+.+.|...
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~~   27 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKDW   27 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            47999999999999999999875

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=95.79  E-value=0.0055  Score=48.92  Aligned_cols=22  Identities=18%  Similarity=0.394  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      +|+++|.+||||||+.+.|...
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEK   23 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998654

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=95.77  E-value=0.0073  Score=46.98  Aligned_cols=24  Identities=17%  Similarity=0.238  Sum_probs=20.8

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ...|++.|.+||||||+.+.|...
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~~   29 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999998754

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=95.77  E-value=0.0058  Score=48.11  Aligned_cols=24  Identities=25%  Similarity=0.228  Sum_probs=21.5

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ...|+|+|.+||||||+.+.|...
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHC
Confidence            457999999999999999999865

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=95.76  E-value=0.014  Score=49.77  Aligned_cols=24  Identities=25%  Similarity=0.382  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      +.|+|+|++|||||||...|....
T Consensus         4 ~~i~i~GptgsGKt~la~~La~~~   27 (322)
T 3exa_A            4 KLVAIVGPTAVGKTKTSVMLAKRL   27 (322)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             cEEEEECCCcCCHHHHHHHHHHhC
Confidence            468999999999999999998763

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=95.76  E-value=0.08  Score=43.71  Aligned_cols=24  Identities=17%  Similarity=0.437  Sum_probs=21.4

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ...+.+.|+||+|||+|..++...
T Consensus        64 ~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           64 LVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHH
Confidence            357999999999999999999875

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=95.73  E-value=0.0048  Score=47.59  Aligned_cols=23  Identities=35%  Similarity=0.551  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      +.|+++|++||||||+.+.|...
T Consensus         5 ~~i~i~G~~GsGKsTla~~La~~   27 (175)
T 1via_A            5 KNIVFIGFMGSGKSTLARALAKD   27 (175)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            36999999999999999999865

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=95.72  E-value=0.007  Score=48.02  Aligned_cols=24  Identities=29%  Similarity=0.267  Sum_probs=21.3

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ...|++.|.+||||||+.+.|...
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~~   33 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVEY   33 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHH
Confidence            357999999999999999999764

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=95.71  E-value=0.0069  Score=48.62  Aligned_cols=24  Identities=17%  Similarity=0.284  Sum_probs=21.1

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ...|+++|.+||||||+.+.|...
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~~   27 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQER   27 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            358999999999999999998764

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=95.69  E-value=0.0063  Score=47.10  Aligned_cols=24  Identities=25%  Similarity=0.234  Sum_probs=21.1

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ...|+++|.+||||||+.+.|.+.
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~~   28 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEEY   28 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            347899999999999999999875

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.68  E-value=0.0055  Score=56.36  Aligned_cols=25  Identities=24%  Similarity=0.311  Sum_probs=22.2

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCc
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      .-.++++|+.|||||||++.|.|..
T Consensus        47 Ge~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           47 GMVVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3479999999999999999999863

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=95.68  E-value=0.0065  Score=49.06  Aligned_cols=24  Identities=21%  Similarity=0.353  Sum_probs=21.0

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ...|+|.|.+||||||+.+.|...
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~~   30 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITTH   30 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999998754

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.67  E-value=0.012  Score=52.43  Aligned_cols=22  Identities=18%  Similarity=0.425  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      -|++.|+||+|||+|..++.+.
T Consensus       208 GiLL~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          208 GVLLYGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             EEEEESCTTTTHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5999999999999999999986

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=95.67  E-value=0.019  Score=49.49  Aligned_cols=25  Identities=20%  Similarity=0.339  Sum_probs=22.1

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWG  117 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~  117 (269)
                      +.|+|+|++|+|||||...|.....
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~~l~   65 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAAHFP   65 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHCC
Confidence            5799999999999999999987643

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=95.66  E-value=0.011  Score=50.20  Aligned_cols=24  Identities=21%  Similarity=0.326  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      +.|+|+|++|||||||...|....
T Consensus        11 ~~i~i~GptgsGKt~la~~La~~~   34 (316)
T 3foz_A           11 KAIFLMGPTASGKTALAIELRKIL   34 (316)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECCCccCHHHHHHHHHHhC
Confidence            568999999999999999998653

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=95.65  E-value=0.0064  Score=48.87  Aligned_cols=23  Identities=13%  Similarity=0.315  Sum_probs=20.7

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..|+|+|.+||||||+.+.|...
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La~~   28 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIKTK   28 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999998764

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=95.65  E-value=0.024  Score=47.45  Aligned_cols=24  Identities=17%  Similarity=0.285  Sum_probs=21.6

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ...+++.|+||+|||+|.+++.+.
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            357999999999999999999876

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=95.64  E-value=0.006  Score=47.38  Aligned_cols=23  Identities=26%  Similarity=0.476  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      +.|+++|.+||||||+.+.|...
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~   25 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKA   25 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999998764

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=95.62  E-value=0.0063  Score=48.83  Aligned_cols=22  Identities=23%  Similarity=0.311  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .++++|++|+|||||++.+++.
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~~   46 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIAK   46 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            6899999999999999998854

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=95.62  E-value=0.0069  Score=47.20  Aligned_cols=23  Identities=13%  Similarity=0.219  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..|++.|.+||||||+.+.|...
T Consensus         4 ~~I~l~G~~GsGKsT~a~~L~~~   26 (196)
T 1tev_A            4 LVVFVLGGPGAGKGTQCARIVEK   26 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999988754

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=95.62  E-value=0.0051  Score=49.28  Aligned_cols=23  Identities=22%  Similarity=0.404  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCc
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      .|+++|+|||||+|....|...+
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~   24 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEK   24 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            58899999999999999998764

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=95.61  E-value=0.0066  Score=52.25  Aligned_cols=23  Identities=17%  Similarity=0.494  Sum_probs=20.9

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..++++|++|+|||||++.+.+.
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            46899999999999999999876

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=95.61  E-value=0.0058  Score=55.28  Aligned_cols=22  Identities=18%  Similarity=0.391  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .++++|++|||||||++.|.+-
T Consensus        31 ~~~liG~nGsGKSTLl~~l~Gl   52 (483)
T 3euj_A           31 VTTLSGGNGAGKSTTMAGFVTA   52 (483)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHhcC
Confidence            6899999999999999998863

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.60  E-value=0.006  Score=56.08  Aligned_cols=24  Identities=25%  Similarity=0.494  Sum_probs=21.8

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      -.++++|+.|||||||++.|.|..
T Consensus        26 ei~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           26 TILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCC
Confidence            479999999999999999999863

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=95.59  E-value=0.021  Score=47.52  Aligned_cols=24  Identities=21%  Similarity=0.325  Sum_probs=21.4

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ...+++.|+||+|||+|.+++.+.
T Consensus        51 ~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           51 PKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            346999999999999999999876

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=95.59  E-value=0.0064  Score=49.09  Aligned_cols=24  Identities=21%  Similarity=0.332  Sum_probs=20.9

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      ..|+++|+|||||+|....|...+
T Consensus        30 kiI~llGpPGsGKgTqa~~L~~~~   53 (217)
T 3umf_A           30 KVIFVLGGPGSGKGTQCEKLVQKF   53 (217)
T ss_dssp             EEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHH
Confidence            467889999999999999998764

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=95.57  E-value=0.12  Score=44.60  Aligned_cols=21  Identities=19%  Similarity=0.419  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 024325           94 EIAFAGRSNVGKSSMLNALTR  114 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~  114 (269)
                      .+++.|+||+|||||...+..
T Consensus        48 LiiIaG~pG~GKTt~al~ia~   68 (338)
T 4a1f_A           48 LVIIGARPSMGKTSLMMNMVL   68 (338)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            689999999999999876654

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=95.57  E-value=0.0074  Score=49.97  Aligned_cols=24  Identities=29%  Similarity=0.430  Sum_probs=21.1

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .+.|++.|.+||||||+.+.|...
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~~   27 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAKI   27 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHH
Confidence            357999999999999999998764

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=95.56  E-value=0.0029  Score=50.36  Aligned_cols=22  Identities=27%  Similarity=0.466  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .|+|.|.+||||||+++.|...
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~   23 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGA   23 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            5899999999999999998764

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=95.55  E-value=0.0078  Score=47.18  Aligned_cols=23  Identities=22%  Similarity=0.286  Sum_probs=20.7

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..|++.|.+||||||+.+.|...
T Consensus        13 ~~I~l~G~~GsGKsT~a~~L~~~   35 (199)
T 2bwj_A           13 KIIFIIGGPGSGKGTQCEKLVEK   35 (199)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999998764

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=95.54  E-value=0.0061  Score=50.86  Aligned_cols=22  Identities=23%  Similarity=0.480  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      -++++|++|+|||||++++.+.
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcChHHHHHHHHHHH
Confidence            3999999999999999999886

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.54  E-value=0.012  Score=52.49  Aligned_cols=23  Identities=22%  Similarity=0.251  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .-|.+.|+||+|||+|..++.+.
T Consensus       216 rGvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          216 KGALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CeeEEECcCCCCHHHHHHHHHHH
Confidence            46999999999999999999987

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.52  E-value=0.032  Score=50.05  Aligned_cols=23  Identities=22%  Similarity=0.316  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .-|++.|+||+|||+|..++.+.
T Consensus       244 rGILLyGPPGTGKTlLAkAiA~e  266 (467)
T 4b4t_H          244 KGILLYGPPGTGKTLCARAVANR  266 (467)
T ss_dssp             SEEEECSCTTSSHHHHHHHHHHH
T ss_pred             CceEeeCCCCCcHHHHHHHHHhc
Confidence            46999999999999999999986

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=95.51  E-value=0.0081  Score=48.08  Aligned_cols=22  Identities=32%  Similarity=0.424  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCCChHHHHHHHhc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTR  114 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~  114 (269)
                      ..|+|+|.+||||||+.+.|..
T Consensus         5 ~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            5 YIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999975

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=95.51  E-value=0.0077  Score=55.92  Aligned_cols=25  Identities=36%  Similarity=0.553  Sum_probs=22.3

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCc
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      .-.++++|++|||||||++.|.|-.
T Consensus       369 G~~~~ivG~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          369 GKTVALVGRSGSGKSTIASLITRFY  393 (582)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhhcc
Confidence            3479999999999999999999863

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=95.49  E-value=0.016  Score=51.05  Aligned_cols=23  Identities=35%  Similarity=0.496  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      +.|+|+|++|+|||||...|...
T Consensus         3 ~~i~i~GptgsGKttla~~La~~   25 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQK   25 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHH
T ss_pred             cEEEEECcchhhHHHHHHHHHHH
Confidence            46899999999999999998765

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=95.48  E-value=0.0085  Score=45.68  Aligned_cols=22  Identities=32%  Similarity=0.356  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .|++.|.+||||||+.+.|...
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRS   23 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998764

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=95.48  E-value=0.0072  Score=49.89  Aligned_cols=23  Identities=17%  Similarity=0.333  Sum_probs=20.7

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..|+++|++||||||+.+.|.+.
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~~   71 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMARS   71 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            46999999999999999999874

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.45  E-value=0.0074  Score=56.28  Aligned_cols=25  Identities=24%  Similarity=0.387  Sum_probs=22.3

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCc
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      .-.++++|+.|||||||++.|.|..
T Consensus       103 Gei~~LvGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B          103 GQVLGLVGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCChHHHHHHHHhcCC
Confidence            3479999999999999999999863

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=95.45  E-value=0.0085  Score=47.89  Aligned_cols=22  Identities=18%  Similarity=0.315  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      +|++.|.+||||||+.+.|...
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEK   23 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998764

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=95.44  E-value=0.0073  Score=50.84  Aligned_cols=22  Identities=27%  Similarity=0.338  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .++++|++|+|||||++.+++.
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            6999999999999999998875

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=95.44  E-value=0.0074  Score=49.83  Aligned_cols=22  Identities=18%  Similarity=0.237  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .|+++|++|||||||.+.|.+.
T Consensus         3 li~I~G~~GSGKSTla~~La~~   24 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQE   24 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHhc
Confidence            5899999999999999998764

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=95.43  E-value=0.0086  Score=55.63  Aligned_cols=25  Identities=40%  Similarity=0.581  Sum_probs=22.3

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCc
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      .-.++++|++|||||||++.|.|-.
T Consensus       369 G~~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          369 GKTVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3479999999999999999999863

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=95.43  E-value=0.0094  Score=48.84  Aligned_cols=24  Identities=21%  Similarity=0.241  Sum_probs=21.2

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ...|++.|++||||||+.+.|...
T Consensus        29 ~~~I~l~G~~GsGKsT~a~~L~~~   52 (243)
T 3tlx_A           29 DGRYIFLGAPGSGKGTQSLNLKKS   52 (243)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999999754

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=95.42  E-value=0.0097  Score=45.82  Aligned_cols=23  Identities=22%  Similarity=0.517  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..+++.|++|+|||+|++++...
T Consensus        44 ~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           44 NNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999998875

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=95.42  E-value=0.0092  Score=46.48  Aligned_cols=22  Identities=32%  Similarity=0.403  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .|++.|.+||||||+.+.|...
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~   23 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEY   23 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998764

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=95.41  E-value=0.0086  Score=45.84  Aligned_cols=23  Identities=22%  Similarity=0.340  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..|++.|.+||||||+.+.|...
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~   25 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARA   25 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            36999999999999999998764

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=95.39  E-value=0.0077  Score=52.60  Aligned_cols=20  Identities=30%  Similarity=0.511  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCChHHHHHHHh
Q 024325           94 EIAFAGRSNVGKSSMLNALT  113 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~  113 (269)
                      ..+|+|++|||||||+++++
T Consensus        25 ~~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           25 ITVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            46799999999999999977

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.38  E-value=0.0082  Score=55.93  Aligned_cols=25  Identities=28%  Similarity=0.535  Sum_probs=22.4

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCc
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      .-.++++|++|||||||++.|.|-.
T Consensus       381 G~~~~ivG~sGsGKSTll~~l~g~~  405 (598)
T 3qf4_B          381 GQKVALVGPTGSGKTTIVNLLMRFY  405 (598)
T ss_dssp             TCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCc
Confidence            4489999999999999999999864

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.35  E-value=0.0082  Score=56.01  Aligned_cols=25  Identities=20%  Similarity=0.302  Sum_probs=22.3

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCc
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      .-.++++|+.|||||||++.|.|..
T Consensus       117 Ge~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          117 GMVVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCChHHHHHHHHhCCC
Confidence            3479999999999999999999863

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=95.35  E-value=0.008  Score=52.11  Aligned_cols=24  Identities=29%  Similarity=0.364  Sum_probs=21.9

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .-+++++|++|+|||||++.|.+.
T Consensus        71 Gq~~gIiG~nGaGKTTLl~~I~g~   94 (347)
T 2obl_A           71 GQRIGIFAGSGVGKSTLLGMICNG   94 (347)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            347999999999999999999986

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=95.35  E-value=0.0093  Score=45.05  Aligned_cols=20  Identities=35%  Similarity=0.484  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCChHHHHHHHh
Q 024325           94 EIAFAGRSNVGKSSMLNALT  113 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~  113 (269)
                      ..+|+|+.|+||||++.+|.
T Consensus        25 ~~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           25 INLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            57899999999999999975

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=95.33  E-value=0.0072  Score=56.08  Aligned_cols=25  Identities=36%  Similarity=0.569  Sum_probs=22.3

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCc
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      .-.++++|++|||||||++.|.|-.
T Consensus       367 G~~~~ivG~sGsGKSTll~~l~g~~  391 (578)
T 4a82_A          367 GETVAFVGMSGGGKSTLINLIPRFY  391 (578)
T ss_dssp             TCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             CCEEEEECCCCChHHHHHHHHhcCC
Confidence            3479999999999999999999864

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=95.32  E-value=0.008  Score=46.49  Aligned_cols=23  Identities=30%  Similarity=0.427  Sum_probs=16.6

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..|++.|.+||||||+.+.|...
T Consensus         6 ~~I~l~G~~GsGKST~a~~La~~   28 (183)
T 2vli_A            6 PIIWINGPFGVGKTHTAHTLHER   28 (183)
T ss_dssp             CEEEEECCC----CHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            47999999999999999998754

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=95.31  E-value=0.01  Score=47.31  Aligned_cols=24  Identities=33%  Similarity=0.302  Sum_probs=21.2

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ...|+++|.+||||||+.+.|.+.
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~~   48 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEHQ   48 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999998765

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=95.31  E-value=0.019  Score=47.11  Aligned_cols=23  Identities=17%  Similarity=0.390  Sum_probs=20.9

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..|++.|++|+|||||.+++.+.
T Consensus        46 ~~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            46999999999999999999875

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=95.29  E-value=0.012  Score=50.47  Aligned_cols=24  Identities=29%  Similarity=0.482  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      +.|+++|++|||||||...|....
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l   29 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADAL   29 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc
Confidence            479999999999999999988753

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=95.29  E-value=0.0087  Score=47.99  Aligned_cols=23  Identities=13%  Similarity=0.348  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..|++.|.+||||||+.+.|...
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~~   28 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKKE   28 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999998764

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=95.26  E-value=0.011  Score=48.67  Aligned_cols=24  Identities=25%  Similarity=0.264  Sum_probs=21.2

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ...|+|.|.+||||||+.+.|...
T Consensus        22 ~~iI~I~G~~GSGKST~a~~L~~~   45 (252)
T 1uj2_A           22 PFLIGVSGGTASGKSSVCAKIVQL   45 (252)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999998764

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.26  E-value=0.0093  Score=54.84  Aligned_cols=23  Identities=22%  Similarity=0.416  Sum_probs=21.4

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      -.++++|+.|||||||++.|+|.
T Consensus       295 ei~~i~G~nGsGKSTLl~~l~Gl  317 (538)
T 3ozx_A          295 EIIGILGPNGIGKTTFARILVGE  317 (538)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999999986

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=95.22  E-value=0.33  Score=40.96  Aligned_cols=22  Identities=23%  Similarity=0.327  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .+.+.|++|+|||+++.++...
T Consensus        50 ~~L~~G~~G~GKT~la~~la~~   71 (324)
T 3u61_B           50 IILHSPSPGTGKTTVAKALCHD   71 (324)
T ss_dssp             EEEECSSTTSSHHHHHHHHHHH
T ss_pred             EEEeeCcCCCCHHHHHHHHHHH
Confidence            4566677999999999999876

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=95.21  E-value=0.012  Score=51.65  Aligned_cols=23  Identities=26%  Similarity=0.336  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      -.++++|++|+|||||++.|.+.
T Consensus       170 ~~i~l~G~~GsGKSTl~~~l~~~  192 (377)
T 1svm_A          170 RYWLFKGPIDSGKTTLAAALLEL  192 (377)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            47999999999999999999875

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=95.20  E-value=0.012  Score=48.10  Aligned_cols=23  Identities=35%  Similarity=0.463  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..|++.|++||||||+.+.|...
T Consensus        10 ~~i~i~G~~GsGKsTla~~la~~   32 (233)
T 3r20_A           10 LVVAVDGPAGTGKSSVSRGLARA   32 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999998743

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.18  E-value=0.0094  Score=55.43  Aligned_cols=25  Identities=28%  Similarity=0.420  Sum_probs=22.3

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCc
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      .-.++++|++|||||||++.|.+-.
T Consensus       369 Ge~~~ivG~sGsGKSTll~~l~g~~  393 (587)
T 3qf4_A          369 GSLVAVLGETGSGKSTLMNLIPRLI  393 (587)
T ss_dssp             TCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCc
Confidence            3479999999999999999999864

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.16  E-value=0.011  Score=54.49  Aligned_cols=24  Identities=21%  Similarity=0.382  Sum_probs=21.9

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      -.++++|+.|||||||++.|+|..
T Consensus       313 e~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          313 EVIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            479999999999999999999973

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=95.14  E-value=0.012  Score=47.38  Aligned_cols=22  Identities=23%  Similarity=0.311  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .|+|.|.+||||||+.+.|...
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~   23 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDK   23 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998754

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=95.14  E-value=0.013  Score=47.68  Aligned_cols=24  Identities=25%  Similarity=0.476  Sum_probs=21.5

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ...|++.|.+||||||+++.|...
T Consensus        26 g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           26 SAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Confidence            457999999999999999999876

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=95.13  E-value=0.015  Score=47.17  Aligned_cols=24  Identities=17%  Similarity=0.239  Sum_probs=21.2

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ...|+|+|.+||||||+.+.|...
T Consensus        16 ~~~I~l~G~~GsGKsT~a~~La~~   39 (233)
T 1ak2_A           16 GVRAVLLGPPGAGKGTQAPKLAKN   39 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999998764

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=95.12  E-value=0.011  Score=47.75  Aligned_cols=23  Identities=17%  Similarity=0.260  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      -.++++|++|+|||||+..+++.
T Consensus        25 ~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           25 SITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHH
Confidence            36999999999999999999874

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=95.10  E-value=0.014  Score=46.35  Aligned_cols=22  Identities=14%  Similarity=0.027  Sum_probs=20.0

Q ss_pred             cEEEEEcCCCCChHHHHHHHhc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTR  114 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~  114 (269)
                      -.++++|++|+|||||+..+++
T Consensus        21 ~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           21 VLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999999876

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=95.08  E-value=0.1  Score=46.77  Aligned_cols=23  Identities=17%  Similarity=0.400  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      +.+.|.|+||+|||||.+.+.+.
T Consensus        51 ~~vLL~GppGtGKTtlAr~ia~~   73 (447)
T 3pvs_A           51 HSMILWGPPGTGKTTLAEVIARY   73 (447)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Confidence            58999999999999999999876

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=95.08  E-value=0.014  Score=46.94  Aligned_cols=24  Identities=17%  Similarity=0.353  Sum_probs=21.1

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ...+++.|++|+|||+|+.++...
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999998764

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=95.06  E-value=0.011  Score=52.95  Aligned_cols=24  Identities=29%  Similarity=0.389  Sum_probs=21.9

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .-.++++|++|||||||++.|.+.
T Consensus       157 Gq~~~IvG~sGsGKSTLl~~Iag~  180 (438)
T 2dpy_A          157 GQRMGLFAGSGVGKSVLLGMMARY  180 (438)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcc
Confidence            347999999999999999999986

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.03  E-value=0.012  Score=54.90  Aligned_cols=24  Identities=21%  Similarity=0.382  Sum_probs=21.8

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      -.++++|+.|+|||||++.|.|..
T Consensus       383 ei~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          383 EVIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            479999999999999999999963

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=95.02  E-value=0.014  Score=46.11  Aligned_cols=23  Identities=26%  Similarity=0.329  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      +.|+|.|.+||||||+.+.|...
T Consensus         3 ~~i~i~G~~GsGKst~~~~la~~   25 (208)
T 3ake_A            3 GIVTIDGPSASGKSSVARRVAAA   25 (208)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            37999999999999999998764

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=94.96  E-value=0.015  Score=45.75  Aligned_cols=23  Identities=26%  Similarity=0.457  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..+++.|++|+|||+|+.++.+.
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999998875

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=94.95  E-value=0.016  Score=44.22  Aligned_cols=24  Identities=25%  Similarity=0.356  Sum_probs=20.8

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .-.|++.|.+||||||+.+.|...
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~~   30 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGLA   30 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             cceEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999998764

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.91  E-value=0.015  Score=50.09  Aligned_cols=24  Identities=29%  Similarity=0.447  Sum_probs=21.0

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .+.+++.|++|+|||||++.+.+.
T Consensus        36 ~~~~ll~Gp~G~GKTtl~~~la~~   59 (354)
T 1sxj_E           36 LPHLLLYGPNGTGKKTRCMALLES   59 (354)
T ss_dssp             CCCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            345999999999999999998873

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=94.86  E-value=0.013  Score=45.07  Aligned_cols=23  Identities=22%  Similarity=0.432  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..+++.|++|+|||+|+..+...
T Consensus        44 ~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           44 NNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             CEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999998765

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=94.83  E-value=0.015  Score=54.29  Aligned_cols=23  Identities=17%  Similarity=0.437  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCc
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      .++++|+.|||||||++.|.|-.
T Consensus       380 iv~iiG~NGsGKSTLlk~l~Gl~  402 (608)
T 3j16_B          380 ILVMMGENGTGKTTLIKLLAGAL  402 (608)
T ss_dssp             EEEEESCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            58999999999999999999873

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=94.82  E-value=0.017  Score=48.37  Aligned_cols=23  Identities=35%  Similarity=0.433  Sum_probs=20.6

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhc
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTR  114 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~  114 (269)
                      ...|+|+|.+||||||+.+.|..
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999873

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=94.80  E-value=0.019  Score=46.55  Aligned_cols=25  Identities=24%  Similarity=0.441  Sum_probs=21.5

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcC
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ....|+++|.+||||||+.+.|.+.
T Consensus        15 ~~~~i~i~G~~gsGKst~~~~l~~~   39 (236)
T 1q3t_A           15 KTIQIAIDGPASSGKSTVAKIIAKD   39 (236)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3458999999999999999998763

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=94.77  E-value=0.013  Score=59.67  Aligned_cols=25  Identities=32%  Similarity=0.486  Sum_probs=22.3

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCc
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      .-+|+++|++|||||||++.|++-+
T Consensus      1105 Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A         1105 GQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp             TCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred             CCEEEEECCCCChHHHHHHHHhcCc
Confidence            3489999999999999999999864

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=94.72  E-value=0.014  Score=46.58  Aligned_cols=22  Identities=27%  Similarity=0.359  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .+++.|+||+||||+..+|.+.
T Consensus        60 ~ili~GPPGtGKTt~a~ala~~   81 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIHF   81 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999998887654

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=94.71  E-value=0.0023  Score=52.09  Aligned_cols=21  Identities=24%  Similarity=0.469  Sum_probs=19.1

Q ss_pred             EEEEcCCCCChHHHHHHHhcC
Q 024325           95 IAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        95 v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ++|+|++|||||||+++|++.
T Consensus        30 ~~i~GpnGsGKSTll~~i~g~   50 (227)
T 1qhl_A           30 TTLSGGNGAGKSTTMAAFVTA   50 (227)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhcc
Confidence            578899999999999999875

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=94.70  E-value=0.055  Score=47.36  Aligned_cols=24  Identities=17%  Similarity=0.292  Sum_probs=21.5

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ...|+|.|++|+|||+|..++...
T Consensus       148 ~~~vLL~GppGtGKT~la~aia~~  171 (389)
T 3vfd_A          148 ARGLLLFGPPGNGKTMLAKAVAAE  171 (389)
T ss_dssp             CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHh
Confidence            458999999999999999999765

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=94.68  E-value=0.019  Score=45.33  Aligned_cols=24  Identities=25%  Similarity=0.369  Sum_probs=21.2

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ...|+++|.+||||||+.+.|...
T Consensus        12 ~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           12 HMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            458999999999999999998764

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=94.67  E-value=0.024  Score=49.19  Aligned_cols=23  Identities=26%  Similarity=0.400  Sum_probs=20.7

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..|++.|+||+|||+|..++...
T Consensus        85 ~~iLL~GppGtGKT~la~ala~~  107 (355)
T 2qp9_X           85 SGILLYGPPGTGKSYLAKAVATE  107 (355)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHHHH
Confidence            35899999999999999999876

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=94.66  E-value=0.14  Score=43.67  Aligned_cols=21  Identities=29%  Similarity=0.583  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 024325           94 EIAFAGRSNVGKSSMLNALTR  114 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~  114 (269)
                      .+.+.|+||+|||+|...+..
T Consensus       125 viLI~GpPGsGKTtLAlqlA~  145 (331)
T 2vhj_A          125 MVIVTGKGNSGKTPLVHALGE  145 (331)
T ss_dssp             EEEEECSCSSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999988875

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.63  E-value=0.019  Score=49.38  Aligned_cols=24  Identities=42%  Similarity=0.720  Sum_probs=21.0

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .|.+++.|++|+||||+++++.+.
T Consensus        46 ~~~~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           46 LPHLLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             CCCEEEECSSSSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            345899999999999999998875

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=94.61  E-value=0.045  Score=44.24  Aligned_cols=41  Identities=10%  Similarity=-0.082  Sum_probs=28.1

Q ss_pred             eEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCC
Q 024325          177 RVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF  217 (269)
Q Consensus       177 ~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~  217 (269)
                      .-++++|-..-+.....+.+..+...++|++++.-..|-..
T Consensus        90 ~dvViIDEaQ~l~~~~ve~l~~L~~~gi~Vil~Gl~~df~~  130 (223)
T 2b8t_A           90 TKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKNFKG  130 (223)
T ss_dssp             CCEEEECSGGGSCTHHHHHHHHHHHTTCEEEEECCSBCTTS
T ss_pred             CCEEEEecCccCcHHHHHHHHHHHhCCCeEEEEeccccccC
Confidence            44677887655544444566666666899999998888653

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=94.58  E-value=0.018  Score=48.01  Aligned_cols=23  Identities=26%  Similarity=0.209  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      -.++++|++|+|||||+..+++.
T Consensus        31 ~i~~i~G~~GsGKTtl~~~l~~~   53 (279)
T 1nlf_A           31 TVGALVSPGGAGKSMLALQLAAQ   53 (279)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            36999999999999999988763

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=94.57  E-value=0.019  Score=49.88  Aligned_cols=23  Identities=30%  Similarity=0.488  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      +.++|.|++|+|||||++.+.+.
T Consensus        45 ~~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           45 PRATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999875

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=94.57  E-value=0.022  Score=44.92  Aligned_cols=22  Identities=32%  Similarity=0.561  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .+++.|++|+|||+|+..+...
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4999999999999999998764

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=94.55  E-value=0.15  Score=49.08  Aligned_cols=24  Identities=21%  Similarity=0.317  Sum_probs=21.9

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..-|++.|+||+|||+|.+++.+.
T Consensus       238 p~GILL~GPPGTGKT~LAraiA~e  261 (806)
T 3cf2_A          238 PRGILLYGPPGTGKTLIARAVANE  261 (806)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHTT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            456999999999999999999987

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=94.46  E-value=0.025  Score=44.89  Aligned_cols=23  Identities=30%  Similarity=0.394  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..|+|+|++|+|||||...|...
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            46999999999999999999876

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=94.46  E-value=0.08  Score=51.40  Aligned_cols=23  Identities=22%  Similarity=0.517  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..++++|+||+|||+|+..+.+.
T Consensus       192 ~~vlL~G~pG~GKT~la~~la~~  214 (854)
T 1qvr_A          192 NNPVLIGEPGVGKTAIVEGLAQR  214 (854)
T ss_dssp             CCCEEEECTTSCHHHHHHHHHHH
T ss_pred             CceEEEcCCCCCHHHHHHHHHHH
Confidence            35899999999999999999875

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=94.46  E-value=0.064  Score=46.44  Aligned_cols=24  Identities=21%  Similarity=0.277  Sum_probs=21.5

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ...|++.|++|+|||+|.+++...
T Consensus       117 ~~~vLl~GppGtGKT~la~aia~~  140 (357)
T 3d8b_A          117 PKGILLFGPPGTGKTLIGKCIASQ  140 (357)
T ss_dssp             CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999999875

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=94.40  E-value=0.027  Score=47.37  Aligned_cols=25  Identities=16%  Similarity=0.343  Sum_probs=21.4

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcC
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ....+++.|+||+|||+|..++...
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~~   90 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAGL   90 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            4457999999999999999887764

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=94.38  E-value=0.023  Score=45.22  Aligned_cols=21  Identities=33%  Similarity=0.436  Sum_probs=18.4

Q ss_pred             cEEEEEcCCCCChHHHHHHHh
Q 024325           93 PEIAFAGRSNVGKSSMLNALT  113 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~  113 (269)
                      ...+|+|+.|+||||++.+|.
T Consensus        24 ~~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           24 GINLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEEcCCCCCHHHHHHHHH
Confidence            367899999999999999864

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=94.38  E-value=0.04  Score=49.70  Aligned_cols=23  Identities=26%  Similarity=0.491  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..++++|+||+|||++.+.|...
T Consensus       202 ~~~LL~G~pG~GKT~la~~la~~  224 (468)
T 3pxg_A          202 NNPVLIGEPGVGKTAIAEGLAQQ  224 (468)
T ss_dssp             CEEEEESCTTTTTHHHHHHHHHH
T ss_pred             CCeEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999998765

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=94.34  E-value=0.024  Score=47.65  Aligned_cols=21  Identities=24%  Similarity=0.219  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 024325           94 EIAFAGRSNVGKSSMLNALTR  114 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~  114 (269)
                      .|+++|.|||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            4 IILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999876

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=94.33  E-value=0.03  Score=48.52  Aligned_cols=25  Identities=20%  Similarity=0.263  Sum_probs=21.5

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcC
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..+.|+++|++|+||||+...|.+.
T Consensus        23 ~~~~i~l~G~~G~GKTTl~~~la~~   47 (359)
T 2ga8_A           23 YRVCVILVGSPGSGKSTIAEELCQI   47 (359)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHHH
Confidence            3468999999999999999887764

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=94.33  E-value=0.049  Score=40.55  Aligned_cols=23  Identities=13%  Similarity=0.131  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..|.+.|++|+|||++..++...
T Consensus        25 ~~vll~G~~GtGKt~lA~~i~~~   47 (145)
T 3n70_A           25 IAVWLYGAPGTGRMTGARYLHQF   47 (145)
T ss_dssp             SCEEEESSTTSSHHHHHHHHHHS
T ss_pred             CCEEEECCCCCCHHHHHHHHHHh
Confidence            35899999999999999999875

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=94.31  E-value=0.018  Score=48.50  Aligned_cols=24  Identities=25%  Similarity=0.434  Sum_probs=17.9

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .+.|+|.|.+||||||+.+.|...
T Consensus         5 ~~iIgItG~sGSGKSTva~~L~~~   28 (290)
T 1a7j_A            5 HPIISVTGSSGAGTSTVKHTFDQI   28 (290)
T ss_dssp             SCEEEEESCC---CCTHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999988753

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=94.22  E-value=0.052  Score=45.61  Aligned_cols=23  Identities=26%  Similarity=0.489  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..+++.|++|+|||++.+++.+.
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHH
Confidence            36999999999999999998764

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=94.19  E-value=0.025  Score=57.48  Aligned_cols=25  Identities=32%  Similarity=0.537  Sum_probs=22.6

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCc
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      .-.++++|++|||||||++.|++.+
T Consensus       444 G~~vaivG~sGsGKSTll~ll~~~~  468 (1321)
T 4f4c_A          444 GQTVALVGSSGCGKSTIISLLLRYY  468 (1321)
T ss_dssp             TCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred             CcEEEEEecCCCcHHHHHHHhcccc
Confidence            3479999999999999999999874

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=94.17  E-value=0.027  Score=47.97  Aligned_cols=23  Identities=26%  Similarity=0.372  Sum_probs=20.7

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..+.+.|++|+|||||++++.+.
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~~   60 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGNE   60 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            46899999999999999999875

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=94.16  E-value=0.014  Score=57.15  Aligned_cols=23  Identities=39%  Similarity=0.635  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      -.++++|+.|||||||++.|+|.
T Consensus       700 eivaIiGpNGSGKSTLLklLaGl  722 (986)
T 2iw3_A          700 SRIAVIGPNGAGKSTLINVLTGE  722 (986)
T ss_dssp             CEEEECSCCCHHHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            37999999999999999999986

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=94.13  E-value=0.029  Score=44.75  Aligned_cols=23  Identities=30%  Similarity=0.512  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..+++.|++|+|||||+..+...
T Consensus        46 ~~~ll~G~~G~GKT~l~~~~~~~   68 (250)
T 1njg_A           46 HAYLFSGTRGVGKTSIARLLAKG   68 (250)
T ss_dssp             SEEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999998764

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=94.08  E-value=0.016  Score=53.39  Aligned_cols=24  Identities=33%  Similarity=0.425  Sum_probs=21.8

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ...|+++|.+|||||||++.|.+.
T Consensus       369 G~iI~LiG~sGSGKSTLar~La~~  392 (552)
T 3cr8_A          369 GFTVFFTGLSGAGKSTLARALAAR  392 (552)
T ss_dssp             CEEEEEEESSCHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCChHHHHHHHHHHh
Confidence            457999999999999999999886

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=94.05  E-value=0.2  Score=47.81  Aligned_cols=24  Identities=25%  Similarity=0.401  Sum_probs=21.2

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ...++++|+||+|||+++..+...
T Consensus       207 ~~~vlL~G~~GtGKT~la~~la~~  230 (758)
T 1r6b_X          207 KNNPLLVGESGVGKTAIAEGLAWR  230 (758)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEcCCCCCHHHHHHHHHHH
Confidence            357899999999999999998875

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=94.05  E-value=0.0095  Score=52.63  Aligned_cols=21  Identities=38%  Similarity=0.537  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 024325           94 EIAFAGRSNVGKSSMLNALTR  114 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~  114 (269)
                      .++|+|++|||||||+++|..
T Consensus        62 ~~~lvG~NGaGKStLl~aI~~   82 (415)
T 4aby_A           62 FCAFTGETGAGKSIIVDALGL   82 (415)
T ss_dssp             EEEEEESHHHHHHHHTHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999998743

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=94.04  E-value=0.034  Score=46.92  Aligned_cols=23  Identities=22%  Similarity=0.453  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..|++.|+||+|||+|.+++.+.
T Consensus        50 ~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           50 KGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCcCHHHHHHHHHHH
Confidence            46999999999999999999876

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=94.02  E-value=0.02  Score=54.05  Aligned_cols=21  Identities=33%  Similarity=0.493  Sum_probs=18.5

Q ss_pred             cEEEEEcCCCCChHHHHHHHh
Q 024325           93 PEIAFAGRSNVGKSSMLNALT  113 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~  113 (269)
                      -.++|+|++|||||||++.++
T Consensus       349 e~vaIiGpnGsGKSTLl~~i~  369 (670)
T 3ux8_A          349 TFVAVTGVSGSGKSTLVNEVL  369 (670)
T ss_dssp             SEEEEECSTTSSHHHHHTTTH
T ss_pred             CEEEEEeeCCCCHHHHHHHHH
Confidence            368999999999999998754

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=94.02  E-value=0.024  Score=46.76  Aligned_cols=24  Identities=29%  Similarity=0.533  Sum_probs=21.6

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ...|+|.|.+||||||+.+.|...
T Consensus        24 ~~~I~ieG~~GsGKST~~~~L~~~   47 (263)
T 1p5z_B           24 IKKISIEGNIAAGKSTFVNILKQL   47 (263)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            458999999999999999999876

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=93.99  E-value=0.03  Score=48.33  Aligned_cols=23  Identities=17%  Similarity=0.333  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..+++.|++|+|||||++.+.+.
T Consensus        46 ~~vli~G~~G~GKTtl~~~l~~~   68 (386)
T 2qby_A           46 NNIFIYGLTGTGKTAVVKFVLSK   68 (386)
T ss_dssp             CCEEEEECTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999998875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	269
d1svia_	195	c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti	5e-26
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	7e-23
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	2e-16
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	5e-15
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	7e-14
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	1e-13
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	6e-12
d1egaa1	179	c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {	6e-12
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	5e-11
d1mkya1	171	c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal	3e-10
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	4e-09
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	6e-09
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	8e-07
d1g7sa4	227	c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-	1e-06
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	1e-05
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	2e-05
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	3e-05
d1puja_	273	c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subti	4e-05
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	4e-05
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	6e-05
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	8e-05
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	1e-04
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	1e-04
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	2e-04
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	7e-04
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	0.001
d2c78a3	204	c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N	0.001
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	0.002
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	0.002
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	0.002
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	0.002
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	0.003
d1jwyb_	306	c.37.1.8 (B:) Dynamin G domain {Dictyostelium disc	0.004
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	0.004

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

 Score = 99.1 bits (245), Expect = 5e-26
 Identities = 61/191 (31%), Positives = 101/191 (52%), Gaps = 2/191 (1%)

Query: 73  NKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 132
            K E   +A     +P   LPEIA AGRSNVGKSS +N+L  +  + RTS KPG TQT+N
Sbjct: 4   TKSEIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLN 63

Query: 133 FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD 192
           F+ +  +L  VD+PGYGFA   +  ++AW  +++ Y++TR  LK V  ++D +      D
Sbjct: 64  FYIINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDD 123

Query: 193 HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAG 252
            ++   ++       V+ TK D +      + A  + ++L  +      +++ SS++  G
Sbjct: 124 VQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPE--DELILFSSETKKG 181

Query: 253 IRSLRTVLSKI 263
                  + K+
Sbjct: 182 KDEAWGAIKKM 192

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 90.6 bits (223), Expect = 7e-23
 Identities = 70/185 (37%), Positives = 96/185 (51%), Gaps = 1/185 (0%)

Query: 77  FFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL 136
           F  +A      P+    E+AFAGRSN GKSS LN LT Q  + RTS  PG TQ IN F++
Sbjct: 1   FVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEV 60

Query: 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELI 196
                LVDLPGYG+A   EE+K  W+  + EY+  R SL+ + +L+D +  +K  D ++I
Sbjct: 61  ADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMI 120

Query: 197 SLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL 256
                S     V+LTK D +       +   + E++ A N  V  V   SS    G+  L
Sbjct: 121 EWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDV-QVETFSSLKKQGVDKL 179

Query: 257 RTVLS 261
           R  L 
Sbjct: 180 RQKLD 184

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 72.8 bits (177), Expect = 2e-16
 Identities = 37/183 (20%), Positives = 73/183 (39%), Gaps = 15/183 (8%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 154
           I FAGRSNVGKS+++  LT +   VR   +PG+T+ I   +      +            
Sbjct: 3   IIFAGRSNVGKSTLIYRLTGKK--VRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLP 60

Query: 155 EEVKDAWEELVKEYVSTRVSLKRVCLLI------------DTKWGVKPRDHELISLMERS 202
           +EV++  ++ +  ++        V +L+              K G  P D E    +   
Sbjct: 61  KEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLREL 120

Query: 203 QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK 262
                V + K D +  +      +  +  +  +  + +  + +S+K G  I  L+  + +
Sbjct: 121 DIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSE-IDKVFIPISAKFGDNIERLKNRIFE 179

Query: 263 IAR 265
           + R
Sbjct: 180 VIR 182

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 69.3 bits (168), Expect = 5e-15
 Identities = 35/180 (19%), Positives = 64/180 (35%), Gaps = 18/180 (10%)

Query: 92  LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN----FFKLGTKLCLVDLPG 147
           + ++   G  N GKSS+L A+TR     + +  P  T + N          +  L D+PG
Sbjct: 1   IADVGLVGYPNAGKSSLLAAMTRAH--PKIAPYPFTTLSPNLGVVEVSEEERFTLADIPG 58

Query: 148 YGFAYAKEE--VKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK 205
                ++ +    +    + +  V   V       L   +   K       +L+ R    
Sbjct: 59  IIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLV 118

Query: 206 YQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 265
                 K D +           ++    A       V+ VS+ +GAG+ +L+  L  + R
Sbjct: 119 AL---NKVDLLEE-------EAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVR 168

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 66.1 bits (160), Expect = 7e-14
 Identities = 30/180 (16%), Positives = 62/180 (34%), Gaps = 20/180 (11%)

Query: 92  LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN----FFKLGTKLCLVDLPG 147
           L ++   G  +VGKS++L+ ++      + +D    T   N        G    + DLP 
Sbjct: 1   LADVGLVGFPSVGKSTLLSVVSSAK--PKIADYHFTTLVPNLGMVETDDGRSFVMADLP- 57

Query: 148 YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID-----TKWGVKPRDHELISLMERS 202
            G      +      + ++    TRV +  + +            +          +  +
Sbjct: 58  -GLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLT 116

Query: 203 QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK 262
           +    +V  K D          A +  E+ K   +   PV  +S+ +  G+R L   ++ 
Sbjct: 117 ERPQIIVANKMDMP-------EAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVAN 169

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.5 bits (164), Expect = 1e-13
 Identities = 33/222 (14%), Positives = 67/222 (30%), Gaps = 33/222 (14%)

Query: 64  ERIEENIFRNKLEFFAAAKVSSSFPAPD--LPEIAFAGRSNVGKSSMLNALTRQWGVVRT 121
             IE  +    ++    + +S +    D  +  +A  G +  GKSS +N L         
Sbjct: 27  NLIELRMRAGNIQL-TNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEG 85

Query: 122 SDKPGLTQTI-----NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLK 176
           + K G+ +               +   DLPG G      +           Y+      +
Sbjct: 86  AAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPD----------TYLEKMKFYE 135

Query: 177 RVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRA----------- 225
               +I +    K  D ++   +   + ++  V TK D+    +                
Sbjct: 136 YDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQD 195

Query: 226 --MQIEESLKANNSLVQPVMMVSSK--SGAGIRSLRTVLSKI 263
             +    + + N     P+ ++S+K         L   L   
Sbjct: 196 IRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISD 237

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 60.8 bits (146), Expect = 6e-12
 Identities = 40/180 (22%), Positives = 65/180 (36%), Gaps = 8/180 (4%)

Query: 90  PDLPE---IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLV 143
           P++ +   +A  GR NVGKS++ NA+  +      S  PG T+     ++   G K   V
Sbjct: 3   PEITDAIKVAIVGRPNVGKSTLFNAILNKE-RALVSPIPGTTRDPVDDEVFIDGRKYVFV 61

Query: 144 DLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ 203
           D  G       E          +   S       V +++D   G+  +D  +  LMER  
Sbjct: 62  DTAGLRRKSRVEPRTVEKYSNYRVVDSIE-KADVVVIVLDATQGITRQDQRMAGLMERRG 120

Query: 204 TKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 263
               VV  K D V   +            K       P++  S+  G  I  +   ++  
Sbjct: 121 RASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLA 180

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 60.5 bits (145), Expect = 6e-12
 Identities = 30/168 (17%), Positives = 59/168 (35%), Gaps = 7/168 (4%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 154
           IA  GR NVGKS++LN L  Q  +  TS K   T+               +         
Sbjct: 8   IAIVGRPNVGKSTLLNKLLGQK-ISITSRKAQTTRHRIVGIHTEGAYQ-AIYVDTPGLHM 65

Query: 155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD 214
           EE +     + K   S+   ++ V  +++        +  L  L E        V    +
Sbjct: 66  EEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDN 125

Query: 215 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK 262
                D+      +   +         ++ +S+++G  + ++  ++ K
Sbjct: 126 VQEKADLLPHLQFLASQMN-----FLDIVPISAETGLNVDTIAAIVRK 168

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 57.7 bits (138), Expect = 5e-11
 Identities = 37/171 (21%), Positives = 71/171 (41%), Gaps = 18/171 (10%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFA 151
           +   G+ NVGKS++LN L  +      +D PG T+ +   ++   G    +VD  G    
Sbjct: 3   MVIVGKPNVGKSTLLNRLLNE-DRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGV--- 58

Query: 152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLT 211
             + E  D  E L  E   T   +++  +++       P D E   ++ER + K  +V+ 
Sbjct: 59  --RSETNDLVERLGIE--RTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVI 114

Query: 212 KTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK 262
               V          +I+  L  +    + ++ +S+  G G+  L   + +
Sbjct: 115 NKVDVVE---KINEEEIKNKLGTD----RHMVKISALKGEGLEKLEESIYR 158

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 55.9 bits (133), Expect = 3e-10
 Identities = 26/168 (15%), Positives = 57/168 (33%), Gaps = 9/168 (5%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 154
           +   GR NVGKS++ N L ++       D+ G+T+      +        L      +  
Sbjct: 3   VLIVGRPNVGKSTLFNKLVKKK-KAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDN 61

Query: 155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD 214
            +   + +         R +   V  ++D K G+   D  L   + +S     +V  K +
Sbjct: 62  PQDIISQKMKEVTLNMIREA-DLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAE 120

Query: 215 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK 262
            +   +   +                  + VS++    + ++   + K
Sbjct: 121 NLREFEREVKPELYSLGFG-------EPIPVSAEHNINLDTMLETIIK 161

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 52.1 bits (123), Expect = 4e-09
 Identities = 27/168 (16%), Positives = 56/168 (33%), Gaps = 12/168 (7%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 154
           +  AGR N GKSS+LNAL  +        +  +   I           + + G       
Sbjct: 4   VVIAGRPNAGKSSLLNALAGR--------EAAIVTDIAGTTRDVLREHIHIDGMPLHIID 55

Query: 155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD 214
                   + V+     R   +           +   D      ++ ++   + +     
Sbjct: 56  TAGLREASDEVERIGIERAWQEIEQ----ADRVLFMVDGTTTDAVDPAEIWPEFIARLPA 111

Query: 215 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK 262
            +    V  +A    E+L  +      ++ +S+++G G+  LR  L +
Sbjct: 112 KLPITVVRNKADITGETLGMSEVNGHALIRLSARTGEGVDVLRNHLKQ 159

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 52.0 bits (123), Expect = 6e-09
 Identities = 25/168 (14%), Positives = 48/168 (28%), Gaps = 8/168 (4%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 154
           +A  G+ NVGKS++LN L     V   S +P  T+      L      +        +  
Sbjct: 8   VAIVGKPNVGKSTLLNNLLGVK-VAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKP 66

Query: 155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD 214
            +    + +         V+     + +      +             +    +V  K D
Sbjct: 67  MDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLD 126

Query: 215 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK 262
                + A +A                  M+S+     +  L+  L  
Sbjct: 127 AAKYPEEAMKAYH-------ELLPEAEPRMLSALDERQVAELKADLLA 167

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.6 bits (109), Expect = 8e-07
 Identities = 24/182 (13%), Positives = 45/182 (24%), Gaps = 16/182 (8%)

Query: 93  PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAY 152
           P I  AG  N GK+S+L  LT        S +P +               V L  +    
Sbjct: 4   PSIIIAGPQNSGKTSLLTLLTTD------SVRPTVVSQEPLSAADYDGSGVTLVDFPGHV 57

Query: 153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW-----GVKPRDHELISLMERSQTKYQ 207
                    + L       +  +  V   +D K              +      +     
Sbjct: 58  KLR--YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDIL 115

Query: 208 VVLTKTDTVFPIDVARRAMQIE---ESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 264
           +   K++       ++    +E   + +          +           +   VL    
Sbjct: 116 IACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQSTD 175

Query: 265 RF 266
            F
Sbjct: 176 GF 177

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 227

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 46.2 bits (108), Expect = 1e-06
 Identities = 33/215 (15%), Positives = 69/215 (32%), Gaps = 45/215 (20%)

Query: 93  PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAY 152
           P ++  G  + GK+++L+ +       R  +  G+TQ I   ++   +       +   +
Sbjct: 6   PIVSVLGHVDHGKTTLLDHIRGSAVASR--EAGGITQHIGATEIPMDVIEGICGDFLKKF 63

Query: 153 AKEEVK--------DAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT 204
           +  E             E                 L++D   G KP+  E ++++   +T
Sbjct: 64  SIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRT 123

Query: 205 KYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ------------------------ 240
            + V   K D +             E+    +  VQ                        
Sbjct: 124 PFVVAANKIDRIHG-WRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERF 182

Query: 241 ----------PVMMVSSKSGAGIRSLRTVLSKIAR 265
                      ++ +S+ +G GI  L T+L  +A+
Sbjct: 183 DRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 1e-05
 Identities = 16/175 (9%), Positives = 51/175 (29%), Gaps = 15/175 (8%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 154
           +   G  N GK+++L   +    V  +       + I        +  +       +   
Sbjct: 18  VIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWN 77

Query: 155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD 214
               +             V +       +     +   +++++  +  +    +   K D
Sbjct: 78  TYYTNTE----------FVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQD 127

Query: 215 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFAKV 269
               + VA  +  ++ +   ++     +    + +G G+      L  +    K+
Sbjct: 128 VKECMTVAEISQFLKLTSIKDHQW--HIQACCALTGEGL---CQGLEWMMSRLKI 177

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (96), Expect = 2e-05
 Identities = 26/175 (14%), Positives = 55/175 (31%), Gaps = 12/175 (6%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 154
           +   G S VGKS++L+  TR    + +    G+       ++  K     +        +
Sbjct: 7   VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA---GQ 63

Query: 155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD 214
           E  +         Y     +L    +     +    R  + +     S     +V  K+D
Sbjct: 64  ERYRRITSA---YYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 120

Query: 215 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL-RTVLSKIARFAK 268
                    RA+  +E+           +  S+     +    + +L++I R   
Sbjct: 121 LRHL-----RAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVS 170

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 3e-05
 Identities = 25/170 (14%), Positives = 51/170 (30%), Gaps = 13/170 (7%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 154
           I   G    GK+++L  L    G + T+                   + D+ G       
Sbjct: 3   ILMVGLDAAGKTTILYKLKL--GEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ------ 54

Query: 155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD 214
               D    L + Y      L  V    D +   + R+  +  L E       +++    
Sbjct: 55  ----DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANK 110

Query: 215 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIR-SLRTVLSKI 263
              P  +    +  +  L +       +    + SG G+   L  + +++
Sbjct: 111 QDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} Length = 273

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

 Score = 41.7 bits (97), Expect = 4e-05
 Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 1/62 (1%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 154
               G  NVGKS+++N L ++  + +T D+PG+T +  + K+G +L L+D PG  +   +
Sbjct: 115 ALIIGIPNVGKSTLINRLAKKN-IAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKFE 173

Query: 155 EE 156
           +E
Sbjct: 174 DE 175

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 4e-05
 Identities = 22/168 (13%), Positives = 42/168 (25%), Gaps = 12/168 (7%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 154
           I   G    GK+++L  L     VV T    G       +K        +L    +    
Sbjct: 8   ILILGLDGAGKTTILYRLQVGE-VVTTIPTIGFNVETVTYK--------NLKFQVWDLGG 58

Query: 155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD 214
                 +           + +   C               ++   E  +    V   K D
Sbjct: 59  LTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSEL-VAMLEEEELRKAILVVFANKQD 117

Query: 215 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK 262
               +  +  A  +      +      +   S+  G G+      L +
Sbjct: 118 MEQAMTSSEMANSLGLPALKDRKW--QIFKTSATKGTGLDEAMEWLVE 163

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 40.3 bits (93), Expect = 6e-05
 Identities = 24/170 (14%), Positives = 53/170 (31%), Gaps = 13/170 (7%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 154
           I   G  N GK+++L  L  +     T      TQ  N   + ++   +++   G     
Sbjct: 19  ILLLGLDNAGKTTLLKQLASEDISHITP-----TQGFNIKSVQSQGFKLNVWDIGGQRKI 73

Query: 155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD 214
                ++ E     +    S  R       +   +  + E     + S     +   K D
Sbjct: 74  RPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEE-----KLSCVPVLIFANKQD 128

Query: 215 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIR-SLRTVLSKI 263
            +     +  A  +      +      +   S+ +G G++  +  V   +
Sbjct: 129 LLTAAPASEIAEGLNLHTIRDRVW--QIQSCSALTGEGVQDGMNWVCKNV 176

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.1 bits (92), Expect = 8e-05
 Identities = 18/172 (10%), Positives = 40/172 (23%), Gaps = 8/172 (4%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 154
           + F G  N GK+++L+ L               T      +L            G     
Sbjct: 3   LLFLGLDNAGKTTLLHMLKND-----RLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQA 57

Query: 155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD 214
             +   +   V   V    +                 +   +  +       ++      
Sbjct: 58  RRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV 117

Query: 215 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF 266
           +   +  A   +    S +        V M S     G          ++++
Sbjct: 118 SEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGY---LEAFQWLSQY 166

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 1e-04
 Identities = 30/173 (17%), Positives = 53/173 (30%), Gaps = 18/173 (10%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFA 151
           I   G S VGKSS+L   T        +   G+   +    +     KL + D  G    
Sbjct: 10  ILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAG---- 65

Query: 152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLT 211
                 ++ +  L   Y      +  V  +      VK  +         ++     +L 
Sbjct: 66  ------QERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLV 119

Query: 212 KTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL-RTVLSKI 263
                       R +   E LK         +  S+K+  G++     ++ KI
Sbjct: 120 GNKIDKE----NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKI 168

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 1e-04
 Identities = 23/174 (13%), Positives = 50/174 (28%), Gaps = 14/174 (8%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 154
           +   G    GK++ +N +       + ++    T   N  K+      + L   G     
Sbjct: 5   LTLVGLQYSGKTTFVNVIASG----QFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRF 60

Query: 155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD 214
             + + +   V   V    +  +  +           D       +       V+  K D
Sbjct: 61  RSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKP-----QLQGIPVLVLGNKRD 115

Query: 215 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFAK 268
              P  +  + +  + +L A          +S K    I      L  + + +K
Sbjct: 116 --LPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDIT---LQWLIQHSK 164

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 39.8 bits (92), Expect = 2e-04
 Identities = 22/151 (14%), Positives = 44/151 (29%), Gaps = 6/151 (3%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 154
           I   G+  VGKSS +N++  +  VV  S                    +++         
Sbjct: 35  ILVMGKGGVGKSSTVNSIIGE-RVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEG 93

Query: 155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ-----VV 209
             + D    ++K ++  +     + +     + V   D  +   +  S  K       V 
Sbjct: 94  GYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVA 153

Query: 210 LTKTDTVFPIDVARRAMQIEESLKANNSLVQ 240
           LT      P  +       + S      +  
Sbjct: 154 LTHAQFSPPDGLPYDEFFSKRSEALLQVVRS 184

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.2 bits (85), Expect = 7e-04
 Identities = 25/173 (14%), Positives = 46/173 (26%), Gaps = 18/173 (10%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL---TQTINFFKLGTKLCLVDLPGYGFA 151
           I   G S+VGK+S L                G+    +TI       KL + D  G    
Sbjct: 8   ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAG---- 63

Query: 152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLT 211
             +E  +         Y      +  +   I  +            +   S    QV+L 
Sbjct: 64  --QERYRTITTAY---YRGAMGFI--LMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLV 116

Query: 212 KTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL-RTVLSKI 263
                   +    + +  +               S+K    ++     ++  I
Sbjct: 117 GNKCDMEDERVVSSERGRQLADHLGF---EFFEASAKDNINVKQTFERLVDVI 166

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 18/143 (12%), Positives = 39/143 (27%), Gaps = 13/143 (9%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 154
           + F G  + GK+ +   L           +  +T +   +K+               +  
Sbjct: 3   VLFVGLCDSGKTLLFVRLLTG---QYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHES 59

Query: 155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ-----VV 209
              +         + S+  ++  V      +  VK     L  ++  S          + 
Sbjct: 60  LRFQLLD-----RFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIA 114

Query: 210 LTKTDTVFPIDVARRAMQIEESL 232
             K D            Q+E+ L
Sbjct: 115 CNKQDIAMAKSAKLIQQQLEKEL 137

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Length = 204

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

 Score = 37.2 bits (86), Expect = 0.001
 Identities = 26/162 (16%), Positives = 51/162 (31%), Gaps = 33/162 (20%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDK---------------PGLTQTINFFKL--- 136
           +   G  + GK+++  ALT        + +                G+T      +    
Sbjct: 6   VGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETA 65

Query: 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELI 196
                 VD PG+              + +K  ++    +    L++    G  P+  E I
Sbjct: 66  KRHYSHVDCPGH-------------ADYIKNMITGAAQMDGAILVVSAADGPMPQTREHI 112

Query: 197 SLMERSQTKYQV-VLTKTDTVFPIDVARRA-MQIEESLKANN 236
            L  +    Y V  + K D V   ++     M++ + L    
Sbjct: 113 LLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 154

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 19/168 (11%), Positives = 48/168 (28%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 154
           + F G  N GK+++L+ L               ++ +    +      +          K
Sbjct: 16  LVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWK 75

Query: 155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD 214
             +      +     +    L      +D+    +   +  I ++     + + +  +  
Sbjct: 76  NYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERL 135

Query: 215 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK 262
                   +   +   SLK  N+    V M S     G       +++
Sbjct: 136 REMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQ 183

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.8 bits (81), Expect = 0.002
 Identities = 21/175 (12%), Positives = 51/175 (29%), Gaps = 7/175 (4%)

Query: 91  DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGF 150
           ++ ++   G S VGK+S+++             K  +       ++      V       
Sbjct: 1   NILKVIILGDSGVGKTSLMHRYVN--DKYSQQYKATIGADFLTKEVTVDGDKVATMQVWD 58

Query: 151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVL 210
              +E  +       +      +                  +  + + +   +T   V+L
Sbjct: 59  TAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVIL 118

Query: 211 TKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 265
                             +E  K+   +  P+ + S+K+   +    T   +IAR
Sbjct: 119 GNKIDAEESKKIVSEKSAQELAKSLGDI--PLFLTSAKNAINV---DTAFEEIAR 168

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.9 bits (82), Expect = 0.002
 Identities = 24/179 (13%), Positives = 54/179 (30%), Gaps = 22/179 (12%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG---LTQTINFFKLGTKLCLVDLPGYGFA 151
           +   G S VGK+ +L   +            G     +TI       KL + D  G    
Sbjct: 9   LLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAG---- 64

Query: 152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLT 211
             +E  +       +        +  +   I  +       + + ++ E +    + ++ 
Sbjct: 65  --QERFRTITTAYYR---GAMGIM--LVYDITNEKSFDNIRNWIRNIEEHASADVEKMIL 117

Query: 212 KTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL-----RTVLSKIAR 265
                      +R +  E   K         M  S+K+   + +      R + +K+ +
Sbjct: 118 GNKCDVND---KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDK 173

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.5 bits (81), Expect = 0.002
 Identities = 23/174 (13%), Positives = 50/174 (28%), Gaps = 18/174 (10%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTK---LCLVDLPGYGFA 151
           I   G S VGKS +L                G+   I    +  K   L + D  G    
Sbjct: 5   ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAG---- 60

Query: 152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLT 211
                 ++ +  +   Y         + +++      +     +    +           
Sbjct: 61  ------QERFRTITTAYYR-----GAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQ 109

Query: 212 KTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 265
                   D+  R +  ++       L  P +  S+K+   +  +   L+K+ +
Sbjct: 110 LLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQ 163

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 35.4 bits (80), Expect = 0.003
 Identities = 25/172 (14%), Positives = 55/172 (31%), Gaps = 13/172 (7%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 154
           +   G  N GK+++L     +       D    T   N   L  +   +++   G     
Sbjct: 5   LLMLGLDNAGKTTILKKFNGE-----DVDTISPTLGFNIKTLEHRGFKLNIWDVGG---- 55

Query: 155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD 214
              + +     + Y  +   L  V    D +     +      L+E       +++    
Sbjct: 56  ---QKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANK 112

Query: 215 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIR-SLRTVLSKIAR 265
              P  ++  A+Q    L +  S    +   S+ +G  +   +  +L  I+ 
Sbjct: 113 QDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS 164

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} Length = 306

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

 Score = 35.6 bits (81), Expect = 0.004
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 91  DLPEIAFAGRSNVGKSSMLNALTRQ 115
           DLP+I   G  + GKSS+L  +  +
Sbjct: 23  DLPQIVVVGSQSSGKSSVLENIVGR 47

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (79), Expect = 0.004
 Identities = 25/177 (14%), Positives = 53/177 (29%), Gaps = 22/177 (12%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTK---LCLVDLPGYGFA 151
               G +  GKS +L+    +     ++   G+        +G K   L + D  G    
Sbjct: 8   FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAG---- 63

Query: 152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLT 211
             +E  +         Y     +L  +   I ++       + L      +     ++L 
Sbjct: 64  --QERFRSVTRSY---YRGAAGAL--LVYDITSRETYNALTNWLTDARMLASQNIVIILC 116

Query: 212 KTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL-----RTVLSKI 263
                   D     ++     + N       +  S+ +G  +        R +L+KI
Sbjct: 117 GNKKDLDADREVTFLEASRFAQENEL---MFLETSALTGENVEEAFVQCARKILNKI 170

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	269
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.97
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.95
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.94
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.94
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.93
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.93
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.93
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.92
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.92
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.91
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.91
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.91
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.91
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.9
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.88
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.87
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.87
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.85
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.85
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.85
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.85
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.84
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.84
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.84
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.84
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.83
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.83
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.83
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.83
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.83
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.83
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.82
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.82
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.81
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.81
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.81
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.8
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.8
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.8
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.8
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.79
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.79
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.79
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.79
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.79
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.79
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.79
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.79
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.79
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.78
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.78
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.78
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.78
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.77
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.77
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.76
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.76
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.74
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.74
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.74
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.74
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.73
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.73
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.72
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.72
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.72
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.71
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.7
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.7
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.69
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.62
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.55
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.53
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.53
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.48
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	99.48
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.47
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.46
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	99.43
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.43
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.37
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.35
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.24
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.92
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.7
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.69
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.63
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.6
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.56
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.46
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.42
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.39
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	98.2
d1okkd2	207	GTPase domain of the signal recognition particle r	98.2
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.03
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.96
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.81
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.71
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.48
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.29
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.25
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.24
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.07
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.05
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.0
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	96.99
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	96.99
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	96.98
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.98
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	96.96
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	96.94
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	96.91
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	96.9
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	96.89
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	96.88
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	96.87
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	96.86
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	96.84
d2awna2	232	Maltose transport protein MalK, N-terminal domain	96.84
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.83
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.82
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.82
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	96.79
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.78
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	96.75
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	96.74
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.71
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	96.71
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.7
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	96.7
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.7
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.68
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.68
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	96.66
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	96.66
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	96.65
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.64
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.64
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.64
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	96.63
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	96.58
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	96.56
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.54
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	96.53
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	96.52
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.5
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.48
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	96.48
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.47
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	96.47
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.43
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	96.41
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.4
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.37
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.35
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.34
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.32
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.32
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.29
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.28
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.27
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.22
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.19
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.19
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	96.08
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.05
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	95.94
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	95.93
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	95.83
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	95.78
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	95.78
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	95.77
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	95.67
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	95.63
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	95.5
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	95.46
d1xzpa1	173	TrmE connector domain {Thermotoga maritima [TaxId:	95.31
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.28
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	95.22
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	95.22
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	95.16
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.12
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	94.98
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	94.96
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	94.89
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	94.87
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	94.73
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	94.65
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	94.46
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	94.45
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	94.39
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	94.29
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	94.26
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	94.25
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	94.24
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	94.24
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.08
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	94.04
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	93.91
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	93.81
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	93.78
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	93.78
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	93.76
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	93.75
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	93.65
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	93.58
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	93.57
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	93.53
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	93.36
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	93.16
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	93.15
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	93.13
d1tuea_	205	Replication protein E1 helicase domain {Human papi	93.06
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	93.01
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	92.88
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	92.85
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	91.98
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	91.82
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	91.45
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	91.14
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	91.11
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	90.82
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	90.81
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	90.77
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	90.7
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	90.63
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	90.57
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	90.57
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	90.51
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	90.43
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	90.39
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	90.38
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	90.13
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	89.93
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	89.54
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	89.27
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	89.2
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	88.66
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	88.02
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	87.09
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	86.92
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	86.83
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	82.69
d1xpua3	289	Transcription termination factor Rho, ATPase domai	81.75
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	81.15

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.97  E-value=2e-29  Score=202.31  Aligned_cols=181  Identities=32%  Similarity=0.546  Sum_probs=139.1

Q ss_pred             ccCCCCCCCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHH
Q 024325           83 VSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWE  162 (269)
Q Consensus        83 ~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~  162 (269)
                      ..+++|..+.|+|+++|+||||||||+|+|+|....+.++..+++|.+.........+.++|++|.+.............
T Consensus        14 ~~~~~p~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   93 (195)
T d1svia_          14 KPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVSKSEREAWG   93 (195)
T ss_dssp             SGGGSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTTEEEEECCCBCCCSSCHHHHHHHH
T ss_pred             ChhHCCCCCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccccccceEEEEEeeccccccccccchhh
Confidence            45567778889999999999999999999999755678888999999988887788899999999876544444444445


Q ss_pred             HHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325          163 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  242 (269)
Q Consensus       163 ~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  242 (269)
                      .+...+......++++++|+|+..++...+.++++.+...++|+++|+||+|+.++.+..+..+.+.+.+..  ....++
T Consensus        94 ~~~~~~~~~~~~~~~vi~viD~~~~~~~~~~~~~~~l~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~--~~~~~~  171 (195)
T d1svia_          94 RMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNI--DPEDEL  171 (195)
T ss_dssp             HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTC--CTTSEE
T ss_pred             hHHhhhhccccchhhhhhhhhccccccccccccccccccccCcceechhhccccCHHHHHHHHHHHHHHhcc--cCCCCE
Confidence            566677777777999999999998888888999999999999999999999999887777766666655432  235679


Q ss_pred             EEeeCCCCCCHHHHHHHHHHhhh
Q 024325          243 MMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       243 i~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      +++||++|+|+++|+++|.+.+.
T Consensus       172 ~~~SA~~~~gi~el~~~i~~~l~  194 (195)
T d1svia_         172 ILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHT
T ss_pred             EEEeCCCCCCHHHHHHHHHHHhC
Confidence            99999999999999999988764

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.95  E-value=1.2e-27  Score=189.74  Aligned_cols=168  Identities=27%  Similarity=0.422  Sum_probs=121.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchh-HHHHHHH-HHHHHHHHhc
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK-EEVKDAW-EELVKEYVST  171 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~-~~~~~~~-~~~~~~~~~~  171 (269)
                      .|+++|+||||||||+|+|++. . ..++++||+|++...+.. ..+.++||||++..... ....+.+ ..+...+...
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~-~-~~~~~~~g~T~~~~~~~~-~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK-K-VRRGKRPGVTRKIIEIEW-KNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDN   78 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC-C-CSSSSSTTCTTSCEEEEE-TTEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC-C-ceeeCCCCEeeccccccc-ccceecccCCceeccccccccccccchhhhhhhhhc
Confidence            5899999999999999999998 4 468999999999876543 45889999998654221 2222222 2333444455


Q ss_pred             ccccceEEEEEeCCC-----------CCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHh-cCCCC
Q 024325          172 RVSLKRVCLLIDTKW-----------GVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA-NNSLV  239 (269)
Q Consensus       172 ~~~~d~vl~vid~~~-----------~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~  239 (269)
                      ...+|++++|+|+..           +....+.++++.+...++|+++|+||+|+....+.  ....+.+.+.. .....
T Consensus        79 ~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~p~iiv~NK~D~~~~~~~--~~~~~~~~~~~~~~~~~  156 (184)
T d2cxxa1          79 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQE--VINFLAEKFEVPLSEID  156 (184)
T ss_dssp             GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHH--HHHHHHHHHTCCGGGHH
T ss_pred             ccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHcCCCEEEEEeeeehhhhHHH--HHHHHHHHhcccccccC
Confidence            667999999999852           45666778888888889999999999999865432  22222222211 11112


Q ss_pred             CCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325          240 QPVMMVSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       240 ~~vi~vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      .+++++||++|+|+++|+++|.+.++.
T Consensus       157 ~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         157 KVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             HHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHccC
Confidence            357899999999999999999988763

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.94  E-value=9.9e-27  Score=184.13  Aligned_cols=161  Identities=24%  Similarity=0.370  Sum_probs=116.4

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCC------CCceeEe---eEEEeCCcEEEEcCCCCCCcchhHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK------PGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEE  163 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~------~gtt~~~---~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~  163 (269)
                      .+|+++|+||||||||+|+|++. ......+.      .|.|.+.   .+...+..+.++||||.             ..
T Consensus         6 inIaiiG~~naGKSTL~n~L~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~-------------~~   71 (179)
T d1wb1a4           6 INLGIFGHIDHGKTTLSKVLTEI-ASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGH-------------AD   71 (179)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTT-C--------------------CCCEEEETTEEEEECCCSSH-------------HH
T ss_pred             EEEEEEeCCCCcHHHHHHHHHHh-cCceecccccceeeeeeeccccccccccCCccccccccccc-------------cc
Confidence            48999999999999999999986 22222222      2233222   22334667899999995             23


Q ss_pred             HHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhc-CCCCCCe
Q 024325          164 LVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN-NSLVQPV  242 (269)
Q Consensus       164 ~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~v  242 (269)
                      +.......+..+|++++++|+..+...++.+++..+...++|+++|+||+|+............+...+... .....|+
T Consensus        72 ~~~~~~~~l~~~d~~ilv~d~~~g~~~~~~~~~~~~~~~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  151 (179)
T d1wb1a4          72 LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSI  151 (179)
T ss_dssp             HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCE
T ss_pred             cccchhhhhhhccccccccccccccchhhhhhhhhhhhcCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeE
Confidence            444445556679999999999999888888888999999999999999999998766554444444444332 2234689


Q ss_pred             EEeeCCCCCCHHHHHHHHHHhhhhh
Q 024325          243 MMVSSKSGAGIRSLRTVLSKIARFA  267 (269)
Q Consensus       243 i~vSa~~g~gi~~L~~~i~~~~~~~  267 (269)
                      ++|||++|+|+++|++.|...+...
T Consensus       152 v~iSA~~g~gi~eL~~~I~~~l~~~  176 (179)
T d1wb1a4         152 IPISAKTGFGVDELKNLIITTLNNA  176 (179)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHHS
T ss_pred             EEEEccCCcCHHHHHHHHHhcCCcc
Confidence            9999999999999999999988764

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.94  E-value=5e-27  Score=185.53  Aligned_cols=160  Identities=21%  Similarity=0.185  Sum_probs=121.4

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE---EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~---~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~  169 (269)
                      ..|+++|.+|+|||||+|+|++. ....+++.+++|.+....   ..+..+.++||||+.......     ...+...+.
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~~-~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~-----~~~~~~~~~   79 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLGV-KVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDAL-----GEFMDQEVY   79 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS-CCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHH-----HHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC-CceeecccCCcccccccceeeeeeeeeeeccccccccccccc-----chhcccccc
Confidence            46999999999999999999998 667889999999887543   336679999999987642211     123334445


Q ss_pred             hcccccceEEEEEeCCCCCCcchHHHHHHHHhh--CCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeC
Q 024325          170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS  247 (269)
Q Consensus       170 ~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~--~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa  247 (269)
                      .....+|++++|+|++.+....+..+.+.+...  ++|+++|+||+|+....+  ...+.+.+.+     ....+++|||
T Consensus        80 ~~~~~ad~il~v~D~~~~~~~~~~~i~~~l~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~-----~~~~~~~iSA  152 (178)
T d1wf3a1          80 EALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPE--EAMKAYHELL-----PEAEPRMLSA  152 (178)
T ss_dssp             HHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHH--HHHHHHHHTS-----TTSEEEECCT
T ss_pred             cccccccceeeeechhhhhcccccchhhheeccccchhhhhhhcccccccCHH--HHHHHHHhhc-----ccCceEEEec
Confidence            556779999999999988887777777777653  679999999999986543  1222222211     1356899999


Q ss_pred             CCCCCHHHHHHHHHHhhh
Q 024325          248 KSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       248 ~~g~gi~~L~~~i~~~~~  265 (269)
                      ++|.|+++|+++|.+.+.
T Consensus       153 ~~~~gi~~L~~~i~~~lp  170 (178)
T d1wf3a1         153 LDERQVAELKADLLALMP  170 (178)
T ss_dssp             TCHHHHHHHHHHHHTTCC
T ss_pred             CCCCCHHHHHHHHHHhCC
Confidence            999999999999998774

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.93  E-value=4.3e-26  Score=178.88  Aligned_cols=161  Identities=19%  Similarity=0.225  Sum_probs=108.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHh
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~  170 (269)
                      .|+++|++|||||||+|+|++. ....+++.+++|+......   .+..+.++||||+.........    ......+..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~----~~~~~~~~~   76 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKK-KKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIIS----QKMKEVTLN   76 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCC----HHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC-CcceecccCceeeccccccccccccccccccccceeeeeccccc----ccccccccc
Confidence            6999999999999999999998 5677889999998864432   3567999999998654221111    111222333


Q ss_pred             cccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCC
Q 024325          171 TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSG  250 (269)
Q Consensus       171 ~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g  250 (269)
                      ....+|++++++|++.+....+..+++.+...++|+++|+||+|+....+.     .+...+...  ...+++++||++|
T Consensus        77 ~~~~ad~i~~~~~~~~~~~~~~~~~~~~l~~~~~pviiv~NK~Dl~~~~~~-----~~~~~~~~~--~~~~~i~iSAk~g  149 (171)
T d1mkya1          77 MIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREFER-----EVKPELYSL--GFGEPIPVSAEHN  149 (171)
T ss_dssp             HHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHHHH-----HTHHHHGGG--SSCSCEECBTTTT
T ss_pred             ccccCcEEEEeecccccccccccccccccccccccccccchhhhhhhhhhh-----HHHHHHHhc--CCCCeEEEecCCC
Confidence            344599999999999888888888889999899999999999998743221     122222222  2356799999999


Q ss_pred             CCHHHHHHHHHHhhhh
Q 024325          251 AGIRSLRTVLSKIARF  266 (269)
Q Consensus       251 ~gi~~L~~~i~~~~~~  266 (269)
                      .|+++|+++|.+.+..
T Consensus       150 ~gid~L~~~i~~~l~e  165 (171)
T d1mkya1         150 INLDTMLETIIKKLEE  165 (171)
T ss_dssp             BSHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhCCC
Confidence            9999999999988754

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.93  E-value=4.1e-26  Score=180.48  Aligned_cols=160  Identities=23%  Similarity=0.244  Sum_probs=108.7

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE----EEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF----FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~----~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      +.|+++|.||||||||+|+|++. ... +++.+++|.....    ...+..+.+|||||+.......      ..+...+
T Consensus         2 ~~VaivG~~nvGKSTLin~L~~~-~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~------~~~~~~~   73 (180)
T d1udxa2           2 ADVGLVGYPNAGKSSLLAAMTRA-HPK-IAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEG------KGLGLEF   73 (180)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSS-CCE-ECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGS------CCSCHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC-CCc-eeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHH------HHHHHHH
Confidence            56999999999999999999998 433 4555555544332    1235679999999986542211      1122234


Q ss_pred             HhcccccceEEEEEeCCCCCCcchHHHHHHHH-----hhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeE
Q 024325          169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLME-----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM  243 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~-----~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi  243 (269)
                      ......++++++++|..............++.     ..++|+++|+||+|+..+.......    +.+..   ...+++
T Consensus        74 l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~----~~~~~---~~~~~~  146 (180)
T d1udxa2          74 LRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALA----DALAR---EGLAVL  146 (180)
T ss_dssp             HHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHH----HHHHT---TTSCEE
T ss_pred             HHHHHhhhhhhhhcccccccccchhhhhhhhhccccccchhhhhhhhhhhhhhhHHHHHHHH----HHHHh---cCCeEE
Confidence            44455689999999986533222222223322     2358999999999999875544332    22322   257899


Q ss_pred             EeeCCCCCCHHHHHHHHHHhhhhh
Q 024325          244 MVSSKSGAGIRSLRTVLSKIARFA  267 (269)
Q Consensus       244 ~vSa~~g~gi~~L~~~i~~~~~~~  267 (269)
                      ++||++|+|+++|++.|.+.++..
T Consensus       147 ~iSA~tg~gid~L~~~i~~~l~~~  170 (180)
T d1udxa2         147 PVSALTGAGLPALKEALHALVRST  170 (180)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred             EEEcCCCCCHHHHHHHHHHHHhhc
Confidence            999999999999999999888653

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.93  E-value=1e-25  Score=178.91  Aligned_cols=172  Identities=24%  Similarity=0.267  Sum_probs=117.7

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      ..++|+++|++|+|||||+|+|++. ....+++.+++|+...   +...+..+.++||||+.......... ........
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~-~~~~~~~~   84 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNK-ERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRT-VEKYSNYR   84 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTS-TTEEECCCC------CCEEEEETTEEEEESSCSCC------------CCSCCHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCC-CcceeecccccccccceeeeccCCceeeeeccCCccccccccccc-cccchhHH
Confidence            4579999999999999999999998 5678899999888764   33447789999999985431111000 00001112


Q ss_pred             HHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchH--HHHHHHHHHHHHHhcCCCCCCeEEe
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID--VARRAMQIEESLKANNSLVQPVMMV  245 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~vi~v  245 (269)
                      .......+|++++|+|+..+.......++..+...+.|+|+|+||+|+....+  .....+.+.+.+..  ....|++++
T Consensus        85 ~~~~~~~~dvii~v~d~~~~~~~~~~~~~~~~~~~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~v  162 (186)
T d1mkya2          85 VVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYF--IDYSPLIFT  162 (186)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGG--GTTSCEEEC
T ss_pred             HHHHHhcCCEEEEeecccccchhhHHHHHHHHHHcCCceeeeccchhhhcchhhhhhhHHHHHHHHhcc--cCCCeEEEE
Confidence            22223349999999999988888888899999989999999999999986543  22223333332221  224689999


Q ss_pred             eCCCCCCHHHHHHHHHHhhhh
Q 024325          246 SSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       246 Sa~~g~gi~~L~~~i~~~~~~  266 (269)
                      ||++|.|+++|+++|.+.+..
T Consensus       163 Sa~~g~gv~~L~~~i~~~~~~  183 (186)
T d1mkya2         163 SADKGWNIDRMIDAMNLAYAS  183 (186)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHHHHh
Confidence            999999999999999887764

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=3e-25  Score=172.01  Aligned_cols=154  Identities=23%  Similarity=0.248  Sum_probs=110.3

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE---EEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~---~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~  169 (269)
                      ++|+++|++|||||||+|+|++. ....++..|+++++...   ...+..+.++||||+.+.......     .......
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~-----~~~~~~~   75 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGR-EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVER-----IGIERAW   75 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTS-CCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHH-----HHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC-CceEeecccccccceEeeeeeccCceeeeccccccccccccchh-----HHHHHHH
Confidence            58999999999999999999998 66778888998877543   234678999999998765322211     1111222


Q ss_pred             hcccccceEEEEEeCCCCCCcchHHHHHH-HHh--hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEee
Q 024325          170 STRVSLKRVCLLIDTKWGVKPRDHELISL-MER--SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS  246 (269)
Q Consensus       170 ~~~~~~d~vl~vid~~~~~~~~~~~~~~~-l~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vS  246 (269)
                      .....+|++++++|+.........+.+.. +..  .++|+++|+||+|+......          +.  .....+++++|
T Consensus        76 ~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~~~~----------~~--~~~~~~~~~iS  143 (161)
T d2gj8a1          76 QEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLG----------MS--EVNGHALIRLS  143 (161)
T ss_dssp             HHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE----------EE--EETTEEEEECC
T ss_pred             HHHHhccccceeeccccccchhhhhhhhhhhhhcccccceeeccchhhhhhhHHH----------HH--HhCCCcEEEEE
Confidence            22334999999999987665555544433 332  36899999999998654211          00  11256899999


Q ss_pred             CCCCCCHHHHHHHHHHhh
Q 024325          247 SKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       247 a~~g~gi~~L~~~i~~~~  264 (269)
                      |++|.||++|+++|.+.+
T Consensus       144 Ak~~~gi~~L~~~l~~~l  161 (161)
T d2gj8a1         144 ARTGEGVDVLRNHLKQSM  161 (161)
T ss_dssp             TTTCTTHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHhhC
Confidence            999999999999998753

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.92  E-value=3.8e-24  Score=171.33  Aligned_cols=161  Identities=20%  Similarity=0.288  Sum_probs=117.3

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCc-CccccCCCCCceeEeeEE--------------------------EeCCcEEEE
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFF--------------------------KLGTKLCLV  143 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~-~~~~~s~~~gtt~~~~~~--------------------------~~~~~~~lv  143 (269)
                      ...+|+++|++++|||||+|+|++.. .........|.|.+..+.                          .....+.++
T Consensus         4 ~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   83 (195)
T d1kk1a3           4 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI   83 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred             CcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEeee
Confidence            34588999999999999999998742 111111223333332111                          012348999


Q ss_pred             cCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCc-chHHHHHHHHhhCCc-EEEEEecCCCCCchHH
Q 024325          144 DLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKP-RDHELISLMERSQTK-YQVVLTKTDTVFPIDV  221 (269)
Q Consensus       144 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~-~~~~~~~~l~~~~~p-~iiv~NK~Dl~~~~~~  221 (269)
                      ||||.             ..+.....+....+|.+++|+|+..+... +..+.+..+...++| +++++||+|+.+....
T Consensus        84 DtPGh-------------~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~~~~iiv~inK~D~~d~~~~  150 (195)
T d1kk1a3          84 DAPGH-------------EALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKA  150 (195)
T ss_dssp             ECSSH-------------HHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHH
T ss_pred             ccchh-------------hhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhcCccceeeeecccchhhHHH
Confidence            99995             45666777777889999999999987644 456677777777766 7888999999987766


Q ss_pred             HHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325          222 ARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      ......+.+.+........|++|+||++|+|+++|++.|.+.+
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         151 LENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             HHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence            6666666666655555567899999999999999999998765

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=1.2e-24  Score=168.48  Aligned_cols=154  Identities=21%  Similarity=0.314  Sum_probs=111.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHh
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~  170 (269)
                      +|+++|.||+|||||+|+|++. ....+++.+++|+...   +...+..+.++||||+........ .   ......+..
T Consensus         2 kI~liG~~n~GKSSLin~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~-~---~~~~~~~~~   76 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE-DRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLV-E---RLGIERTLQ   76 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH-TBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTC-C---CCCHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC-CceeeeccccccccceeEEEEeCCeeEEeccccccccCCccHH-H---HHHHHHHHH
Confidence            7999999999999999999998 6678899999887763   333467799999999754321100 0   000112222


Q ss_pred             cccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCC
Q 024325          171 TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSG  250 (269)
Q Consensus       171 ~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g  250 (269)
                      ....+|++++|+|++.+....+..+...+  ...++++++||+|+.+..+......    .+    ....++++|||++|
T Consensus        77 ~~~~ad~ii~v~d~~~~~~~~~~~~~~~~--~~~~~i~~~~k~d~~~~~~~~~~~~----~~----~~~~~~~~vSA~~g  146 (160)
T d1xzpa2          77 EIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVEKINEEEIKN----KL----GTDRHMVKISALKG  146 (160)
T ss_dssp             HHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCCCCCHHHHHH----HH----TCSTTEEEEEGGGT
T ss_pred             HHHhCCEEEEEEeCCCCcchhhhhhhhhc--ccccceeeeeeccccchhhhHHHHH----Hh----CCCCcEEEEECCCC
Confidence            33348999999999987766665554443  4678999999999998765433222    22    23578999999999


Q ss_pred             CCHHHHHHHHHH
Q 024325          251 AGIRSLRTVLSK  262 (269)
Q Consensus       251 ~gi~~L~~~i~~  262 (269)
                      .|+++|+++|.+
T Consensus       147 ~gi~~L~~~I~k  158 (160)
T d1xzpa2         147 EGLEKLEESIYR  158 (160)
T ss_dssp             CCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHh
Confidence            999999999875

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.91  E-value=1.2e-24  Score=178.44  Aligned_cols=160  Identities=22%  Similarity=0.318  Sum_probs=108.4

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE---------------------EEeCCcEEEEcCCCCCC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---------------------FKLGTKLCLVDLPGYGF  150 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~---------------------~~~~~~~~lvDtpG~~~  150 (269)
                      .|.|+++|++|+|||||+|+|++.. .. .....++|.+...                     ...+..+.++||||+..
T Consensus         5 ~p~IaIiGh~d~GKSTL~~~L~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~   82 (227)
T d1g7sa4           5 SPIVSVLGHVDHGKTTLLDHIRGSA-VA-SREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA   82 (227)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHH-HS-CC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred             CCEEEEEeCCCccHHHHHHHHHhhc-ch-heecCceeeeccccccccccccccccccccceeecccccccccccccceec
Confidence            4779999999999999999999862 11 1122223222111                     11245699999999743


Q ss_pred             cchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHH---------
Q 024325          151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDV---------  221 (269)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~---------  221 (269)
                      -             .......+..+|++++|+|+..++..++..++..+...++|+|+|+||+|+......         
T Consensus        83 f-------------~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iivlNK~D~~~~~~~~~~~~~~~~  149 (227)
T d1g7sa4          83 F-------------TTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMET  149 (227)
T ss_dssp             C-------------TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHH
T ss_pred             c-------------cccchhcccccceEEEEEecccCcccchhHHHHHhhcCCCeEEEEEECccCCCchhhhhhHHHHHh
Confidence            1             122234455699999999999999999999999999999999999999999754310         


Q ss_pred             ---------HHHHHHHHH---HHHhcC------------CCCCCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325          222 ---------ARRAMQIEE---SLKANN------------SLVQPVMMVSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       222 ---------~~~~~~~~~---~~~~~~------------~~~~~vi~vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                               ......+.+   .+....            ....+++++||++|.|+++|++.|....+.
T Consensus       150 ~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~  218 (227)
T d1g7sa4         150 FSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ  218 (227)
T ss_dssp             HTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             hhcchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence                     000111111   111100            112478999999999999999999877653

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.91  E-value=2.2e-23  Score=168.22  Aligned_cols=161  Identities=21%  Similarity=0.284  Sum_probs=116.0

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCC--------CCC-ceeEeeE------------------------EEeC
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD--------KPG-LTQTINF------------------------FKLG  137 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~--------~~g-tt~~~~~------------------------~~~~  137 (269)
                      +..+|+++|+.++|||||+++|++... .....        ..+ ++.+...                        ....
T Consensus         7 p~ini~iiGhVd~GKSTL~~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (205)
T d2qn6a3           7 PEVNIGVVGHVDHGKTTLVQAITGIWT-SKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFL   85 (205)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHSCCC---------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEE
T ss_pred             CCeEEEEEEccCCcHHHHHHHHHhhhc-hhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccce
Confidence            345899999999999999999997421 10000        000 1111000                        0012


Q ss_pred             CcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCC-CcchHHHHHHHHhhCC-cEEEEEecCCC
Q 024325          138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERSQT-KYQVVLTKTDT  215 (269)
Q Consensus       138 ~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~-~~~~~~~~~~l~~~~~-p~iiv~NK~Dl  215 (269)
                      ..+.++||||+             .++......++..+|.+++|+|+..++ ..+..+.+..+...++ |+++++||+|+
T Consensus        86 r~~~iiD~PGH-------------~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~~i~~iIV~vNK~Dl  152 (205)
T d2qn6a3          86 RRISFIDAPGH-------------EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDV  152 (205)
T ss_dssp             EEEEEEECSCH-------------HHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECGGG
T ss_pred             EEEEEeccchH-------------HHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHcCCceeeeccccCCC
Confidence            35899999996             456667777888899999999999886 5555677777777775 78899999999


Q ss_pred             CCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          216 VFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      .+..........+.+.+........|++++||++|.||++|++.|...+.
T Consensus       153 ~~~~~~~~~~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip  202 (205)
T d2qn6a3         153 VSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK  202 (205)
T ss_dssp             SCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             ccchHHHHHHHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCC
Confidence            98777666666666666555555689999999999999999999987654

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.91  E-value=8.1e-25  Score=173.60  Aligned_cols=159  Identities=18%  Similarity=0.176  Sum_probs=102.2

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE----eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~----~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      +.|+++|+||||||||+|+|++. .. .+.+.+++|.+.....    .+..+.+|||||+.......      ..+...+
T Consensus         2 ~~VaiiG~~nvGKSSLin~L~~~-~~-~~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~------~~~~~~~   73 (185)
T d1lnza2           2 ADVGLVGFPSVGKSTLLSVVSSA-KP-KIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQG------VGLGHQF   73 (185)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEE-CC-EESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCT------TTTHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHhCC-CC-ceecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHH------HHHHHHH
Confidence            57999999999999999999998 44 4566677766643322    24569999999974321111      0111222


Q ss_pred             HhcccccceEEEEEeCCCCCCcchHH--H-HHHH-Hh-----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCC
Q 024325          169 VSTRVSLKRVCLLIDTKWGVKPRDHE--L-ISLM-ER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLV  239 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~~~~~~~~~--~-~~~l-~~-----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  239 (269)
                      ......++.++++++...........  . .... ..     .++|+++|+||+|+.+..+.   .+.+.+.    ....
T Consensus        74 l~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~~~---~~~~~~~----~~~~  146 (185)
T d1lnza2          74 LRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAEN---LEAFKEK----LTDD  146 (185)
T ss_dssp             HHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHH---HHHHHHH----CCSC
T ss_pred             HHHHHHhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHHHH---HHHHHHH----hccC
Confidence            23333378888888765332222211  1 1111 11     25799999999999865322   2222222    2336


Q ss_pred             CCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325          240 QPVMMVSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       240 ~~vi~vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      .|++++||++|+|+++|++.|.+.+..
T Consensus       147 ~~v~~iSA~~g~Gi~~L~~~i~~~L~~  173 (185)
T d1lnza2         147 YPVFPISAVTREGLRELLFEVANQLEN  173 (185)
T ss_dssp             CCBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhhhh
Confidence            789999999999999999999998754

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=2.9e-23  Score=163.95  Aligned_cols=180  Identities=34%  Similarity=0.436  Sum_probs=115.1

Q ss_pred             ccCCCCCCCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeE-eeEEEeCCcEEEEcCCCCCCcchhHHHHHHH
Q 024325           83 VSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-INFFKLGTKLCLVDLPGYGFAYAKEEVKDAW  161 (269)
Q Consensus        83 ~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~-~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~  161 (269)
                      ..+++|....|+|+++|+||||||||+|+|++. .........+++.. ............+++.+..............
T Consensus         7 ~~~~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (188)
T d1puia_           7 DIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQ-KSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKW   85 (188)
T ss_dssp             SGGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC--------------CCEEEEEEETTEEEEECCCCC------CCHHHH
T ss_pred             ChhHCCCccCCEEEEECCCCCCHHHHHHHHhCC-CceEeecccccceeeccceecccccceeeeecccccchhhhhhhhh
Confidence            345677788899999999999999999999997 33434443444333 3333333333444443332111111111111


Q ss_pred             HHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCC
Q 024325          162 EELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP  241 (269)
Q Consensus       162 ~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (269)
                      ......+......++.++++.+...+........+..+.....++++++||+|+....+.......+.+.+.... ...+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~-~~~~  164 (188)
T d1puia_          86 QRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFN-GDVQ  164 (188)
T ss_dssp             HHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGC-SCEE
T ss_pred             hhhhhhhhhhhhheeEEEEeecccccchhHHHHHHHHhhhccccccchhhhhhccCHHHHHHHHHHHHHHHHhhC-CCCc
Confidence            222333334444567778888888777777788888888889999999999999988777776667766665432 3468


Q ss_pred             eEEeeCCCCCCHHHHHHHHHHhh
Q 024325          242 VMMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       242 vi~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      +++|||++|+|+++|++.|.+.+
T Consensus       165 ~i~vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         165 VETFSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHh
Confidence            99999999999999999998754

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.88  E-value=1.4e-22  Score=161.83  Aligned_cols=159  Identities=18%  Similarity=0.255  Sum_probs=119.9

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCc--------------CccccCCCCCceeEeeE---EEeCCcEEEEcCCCCCCcchhH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQW--------------GVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKE  155 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~--------------~~~~~s~~~gtt~~~~~---~~~~~~~~lvDtpG~~~~~~~~  155 (269)
                      .+|+++|++++|||||+++|++..              .........|.|.+..+   .+.+..+.++||||+       
T Consensus         4 ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh-------   76 (196)
T d1d2ea3           4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGH-------   76 (196)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSH-------
T ss_pred             cEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcch-------
Confidence            589999999999999999998520              00011223456666533   334778999999996       


Q ss_pred             HHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCC-cEEEEEecCCCCCchHH-HHHHHHHHHHHH
Q 024325          156 EVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT-KYQVVLTKTDTVFPIDV-ARRAMQIEESLK  233 (269)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~-p~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~  233 (269)
                            ..+.....+.+..+|++++|+|+..++..++.+.+..+...++ |+|+++||+|+....+. +.....+++.+.
T Consensus        77 ------~~f~~~~~~~~~~aD~allVVda~~G~~~QT~~~~~~a~~~~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~  150 (196)
T d1d2ea3          77 ------ADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLT  150 (196)
T ss_dssp             ------HHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHhhcCeEEEEEEcCCCCchhHHHHHHHHHHhcCCcEEEEEecccccccHHHHHHHHHHHHHHHH
Confidence                  4566777788888999999999999999999999998888765 68899999999865443 334445666665


Q ss_pred             hcC--CCCCCeEEeeCCCC----------CCHHHHHHHHHHhh
Q 024325          234 ANN--SLVQPVMMVSSKSG----------AGIRSLRTVLSKIA  264 (269)
Q Consensus       234 ~~~--~~~~~vi~vSa~~g----------~gi~~L~~~i~~~~  264 (269)
                      ...  ....|++++||++|          .|+.+|++.|.+.+
T Consensus       151 ~~~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~i  193 (196)
T d1d2ea3         151 EFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (196)
T ss_dssp             HTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             HhCCCcccCEEEEEEccccccccCcccccCCHHHHHHHHHhhC
Confidence            432  23578999999998          59999999887654

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.87  E-value=1e-22  Score=159.84  Aligned_cols=156  Identities=16%  Similarity=0.185  Sum_probs=101.9

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHh
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~  170 (269)
                      ...+|+++|.+|||||||+|+|.+. ....+.+..+++... ....+..+.++|++|....          ......++.
T Consensus        15 ~~~kI~vvG~~~vGKSsLi~~l~~~-~~~~~~~~~~~~~~~-i~~~~~~~~i~d~~g~~~~----------~~~~~~~~~   82 (176)
T d1fzqa_          15 QEVRILLLGLDNAGKTTLLKQLASE-DISHITPTQGFNIKS-VQSQGFKLNVWDIGGQRKI----------RPYWRSYFE   82 (176)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCCS-CCEEEEEETTEEEEE-EEETTEEEEEEECSSCGGG----------HHHHHHHHT
T ss_pred             CEEEEEEECCCCCCHHHHHHHHhcC-CCCcceeeeeeeEEE-eccCCeeEeEeeccccccc----------hhHHHHHhh
Confidence            3468999999999999999999987 444444444444332 2223667999999996331          122233333


Q ss_pred             cccccceEEEEEeCCCCCCcchH-HHHHHH----HhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEe
Q 024325          171 TRVSLKRVCLLIDTKWGVKPRDH-ELISLM----ERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV  245 (269)
Q Consensus       171 ~~~~~d~vl~vid~~~~~~~~~~-~~~~~l----~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v  245 (269)
                         .+|++++|+|.++....... ..+..+    ...++|+++|+||+|+.+........+.+..  ........+++++
T Consensus        83 ---~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  157 (176)
T d1fzqa_          83 ---NTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNL--HTIRDRVWQIQSC  157 (176)
T ss_dssp             ---TCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTG--GGCCSSCEEEEEC
T ss_pred             ---ccceeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccHHHHHHHHHH--HHHHhcCCEEEEE
Confidence               39999999998753222211 122111    1236899999999999876554333332211  1112234578999


Q ss_pred             eCCCCCCHHHHHHHHHHh
Q 024325          246 SSKSGAGIRSLRTVLSKI  263 (269)
Q Consensus       246 Sa~~g~gi~~L~~~i~~~  263 (269)
                      ||++|+|++++++||.+.
T Consensus       158 SA~tg~gv~e~~~~l~~~  175 (176)
T d1fzqa_         158 SALTGEGVQDGMNWVCKN  175 (176)
T ss_dssp             CTTTCTTHHHHHHHHHHT
T ss_pred             eCCCCCCHHHHHHHHHhc
Confidence            999999999999999875

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.87  E-value=3.7e-22  Score=155.09  Aligned_cols=156  Identities=19%  Similarity=0.155  Sum_probs=100.3

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR  172 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~  172 (269)
                      .+|+++|.+|||||||+|+|.+. ....+.+..+.... .+...+..+.+|||||..             .+........
T Consensus         3 ~ki~ivG~~~~GKTsLi~~l~~~-~~~~~~~t~~~~~~-~~~~~~~~~~~~D~~G~~-------------~~~~~~~~~~   67 (165)
T d1ksha_           3 LRLLMLGLDNAGKTTILKKFNGE-DVDTISPTLGFNIK-TLEHRGFKLNIWDVGGQK-------------SLRSYWRNYF   67 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTTC-CCSSCCCCSSEEEE-EEEETTEEEEEEEECCSH-------------HHHTTGGGGC
T ss_pred             EEEEEECCCCCCHHHHHHHHcCC-CCCcccceEeeeee-eccccccceeeeecCcch-------------hhhhHHHhhh
Confidence            58999999999999999999987 33333333332221 223346789999999951             1111222334


Q ss_pred             cccceEEEEEeCCCCCCcch--HHHHHHHH---hhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeC
Q 024325          173 VSLKRVCLLIDTKWGVKPRD--HELISLME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS  247 (269)
Q Consensus       173 ~~~d~vl~vid~~~~~~~~~--~~~~~~l~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa  247 (269)
                      ..++++++++|..+.....+  ..+...+.   ..+.|+++|+||+|+.+..........+.  +........+++++||
T Consensus        68 ~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Sa  145 (165)
T d1ksha_          68 ESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALE--LDSIRSHHWRIQGCSA  145 (165)
T ss_dssp             TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTT--GGGCCSSCEEEEECCT
T ss_pred             hhhhcceeeeecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCHHHHHHHHH--hhhhhcCCCEEEEEEC
Confidence            45899999999875322221  12222222   24689999999999976544433322221  1112222457899999


Q ss_pred             CCCCCHHHHHHHHHHhhh
Q 024325          248 KSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       248 ~~g~gi~~L~~~i~~~~~  265 (269)
                      ++|+|+++++++|.+.+.
T Consensus       146 ~~g~gv~e~~~~l~~~i~  163 (165)
T d1ksha_         146 VTGEDLLPGIDWLLDDIS  163 (165)
T ss_dssp             TTCTTHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHH
Confidence            999999999999987653

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=3.5e-21  Score=151.25  Aligned_cols=163  Identities=20%  Similarity=0.205  Sum_probs=108.4

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE---EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~---~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~  169 (269)
                      ..|+++|.+|||||||+|+|++. ....++..+++++.....   .....+.++|+||.....    .............
T Consensus         6 ~~I~iiG~~nvGKSSLin~L~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~   80 (179)
T d1egaa1           6 GFIAIVGRPNVGKSTLLNKLLGQ-KISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE----KRAINRLMNKAAS   80 (179)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTC-SEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHH----HHHHHHHHTCCTT
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC-CceeeccCCCceEEEEEeeeecCCceeEeecCCCceecc----hhhhhhhhhhccc
Confidence            46999999999999999999998 667777777777664322   224557788999974321    1111111111111


Q ss_pred             hcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCC
Q 024325          170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS  249 (269)
Q Consensus       170 ~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~  249 (269)
                      .....+++++++.|+.. .......+...+.....|.++|+||+|........  ..........  ....++++|||++
T Consensus        81 ~~~~~~~~~l~~~d~~~-~~~~~~~~~~~l~~~~~~~i~v~~k~d~~~~~~~~--~~~~~~~~~~--~~~~~~~~vSA~~  155 (179)
T d1egaa1          81 SSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADL--LPHLQFLASQ--MNFLDIVPISAET  155 (179)
T ss_dssp             SCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHHHH--HHHHHHHHTT--SCCSEEEECCTTT
T ss_pred             cchhhcceeEEEEecCc-cchhHHHHHHHhhhccCceeeeeeeeeccchhhhh--hhHhhhhhhh--cCCCCEEEEeCcC
Confidence            22335788888888763 44445566666777788999999999988763321  1111111111  2246899999999


Q ss_pred             CCCHHHHHHHHHHhhh
Q 024325          250 GAGIRSLRTVLSKIAR  265 (269)
Q Consensus       250 g~gi~~L~~~i~~~~~  265 (269)
                      |+|+++|+++|.+.+.
T Consensus       156 g~gi~~L~~~i~~~lp  171 (179)
T d1egaa1         156 GLNVDTIAAIVRKHLP  171 (179)
T ss_dssp             TTTHHHHHHHHHTTCC
T ss_pred             CCCHHHHHHHHHHhCC
Confidence            9999999999998774

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.85  E-value=2.2e-21  Score=155.98  Aligned_cols=143  Identities=20%  Similarity=0.248  Sum_probs=104.4

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcC----------ccccCCC-----CCceeEee---EEEeCCcEEEEcCCCCCCcchh
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWG----------VVRTSDK-----PGLTQTIN---FFKLGTKLCLVDLPGYGFAYAK  154 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~----------~~~~s~~-----~gtt~~~~---~~~~~~~~~lvDtpG~~~~~~~  154 (269)
                      ++|+++|++++|||||+++|+....          .......     .|+|.+..   +...+..+.++||||+.     
T Consensus         4 ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~-----   78 (204)
T d2c78a3           4 VNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHA-----   78 (204)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSG-----
T ss_pred             eEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCch-----
Confidence            5899999999999999999974210          0001111     15666653   33457889999999983     


Q ss_pred             HHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCc-EEEEEecCCCCCchH-HHHHHHHHHHHH
Q 024325          155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPID-VARRAMQIEESL  232 (269)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p-~iiv~NK~Dl~~~~~-~~~~~~~~~~~~  232 (269)
                              .+.....+.+..+|.+++|+|+..++..++.+.+..+...++| +++++||+|+.+..+ .....+.+.+.+
T Consensus        79 --------df~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~~~~~gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l  150 (204)
T d2c78a3          79 --------DYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLL  150 (204)
T ss_dssp             --------GGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHH
T ss_pred             --------hhHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEecccCCCHHHHHHHHHHHHHHH
Confidence                    3445556666779999999999999999999999999999987 677899999987543 344556666666


Q ss_pred             HhcC--CCCCCeEEeeCC
Q 024325          233 KANN--SLVQPVMMVSSK  248 (269)
Q Consensus       233 ~~~~--~~~~~vi~vSa~  248 (269)
                      ....  ....+++++|+.
T Consensus       151 ~~~~~~~~~i~~i~~sa~  168 (204)
T d2c78a3         151 NQYEFPGDEVPVIRGSAL  168 (204)
T ss_dssp             HHTTSCTTTSCEEECCHH
T ss_pred             HhcCCCcccceeeeeech
Confidence            5432  234678998875

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.85  E-value=3.7e-22  Score=157.67  Aligned_cols=162  Identities=17%  Similarity=0.150  Sum_probs=101.7

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~  169 (269)
                      ....+|+++|.+|||||||+++|.+. ......+..+..... ....+..+.+|||||.....          .+..   
T Consensus        15 ~k~~KI~lvG~~~vGKTsLi~~l~~~-~~~~~~~t~~~~~~~-~~~~~~~~~i~D~~g~~~~~----------~~~~---   79 (182)
T d1moza_          15 NKELRILILGLDGAGKTTILYRLQIG-EVVTTKPTIGFNVET-LSYKNLKLNVWDLGGQTSIR----------PYWR---   79 (182)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCS-EEEEECSSTTCCEEE-EEETTEEEEEEEEC----CC----------TTGG---
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcC-CCCccccccceEEEE-EeeCCEEEEEEecccccccc----------hhHH---
Confidence            44679999999999999999999887 333333333332221 22346678999999974321          1111   


Q ss_pred             hcccccceEEEEEeCCCCCCcch-HHHHHH-HHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEE
Q 024325          170 STRVSLKRVCLLIDTKWGVKPRD-HELISL-MER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM  244 (269)
Q Consensus       170 ~~~~~~d~vl~vid~~~~~~~~~-~~~~~~-l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~  244 (269)
                      .....++++++|+|.++...... ...+.. +..   .+.|+++|+||+|+.......+..+.+.  +........++++
T Consensus        80 ~~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~--~~~~~~~~~~~~e  157 (182)
T d1moza_          80 CYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELN--LVELKDRSWSIVA  157 (182)
T ss_dssp             GTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTT--TTTCCSSCEEEEE
T ss_pred             hhhccceeEEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccCHHHHHHHHH--HHHHhhCCCEEEE
Confidence            22334899999999886443322 122222 221   3589999999999976543333222211  1111223457899


Q ss_pred             eeCCCCCCHHHHHHHHHHhhhhhc
Q 024325          245 VSSKSGAGIRSLRTVLSKIARFAK  268 (269)
Q Consensus       245 vSa~~g~gi~~L~~~i~~~~~~~k  268 (269)
                      |||++|+|+++++++|.+.+...+
T Consensus       158 ~SA~~g~gv~e~~~~l~~~i~~~~  181 (182)
T d1moza_         158 SSAIKGEGITEGLDWLIDVIKEEQ  181 (182)
T ss_dssp             EBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHHHHcC
Confidence            999999999999999999887654

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.85  E-value=6.2e-21  Score=149.36  Aligned_cols=156  Identities=15%  Similarity=0.095  Sum_probs=98.4

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhc
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST  171 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~  171 (269)
                      ..+|+++|.+|||||||++++++.. .....+..+.+.. ........+.+|||||....          .   ......
T Consensus        12 ~~kIvlvG~~~vGKTSli~rl~~~~-~~~~~~t~~~~~~-~~~~~~~~~~i~D~~g~~~~----------~---~~~~~~   76 (173)
T d1e0sa_          12 EMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVE-TVTYKNVKFNVWDVGGQDKI----------R---PLWRHY   76 (173)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTTCCC-CEEEEEETTEEEE-EEEETTEEEEEEEESCCGGG----------H---HHHGGG
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCC-CCCccceeeeeEE-EeeccceeeEEecCCCcchh----------h---hHHHhh
Confidence            4689999999999999999999763 2222111111111 12223567899999997432          1   122234


Q ss_pred             ccccceEEEEEeCCCCCCcch--HHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEee
Q 024325          172 RVSLKRVCLLIDTKWGVKPRD--HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS  246 (269)
Q Consensus       172 ~~~~d~vl~vid~~~~~~~~~--~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vS  246 (269)
                      ...++++++|+|++.......  ..+...+..   ...|+++|+||+|+.+..........+.  +........+++++|
T Consensus        77 ~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~--~~~~~~~~~~~~e~S  154 (173)
T d1e0sa_          77 YTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLG--LTRIRDRNWYVQPSC  154 (173)
T ss_dssp             TTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTT--GGGCCSSCEEEEECB
T ss_pred             hcccceEEEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHHHHHHHH--HHHHHhCCCEEEEee
Confidence            556999999999874222111  122222221   3689999999999986544333222221  112222345689999


Q ss_pred             CCCCCCHHHHHHHHHHhh
Q 024325          247 SKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       247 a~~g~gi~~L~~~i~~~~  264 (269)
                      |++|+||++++++|.+.+
T Consensus       155 A~tg~gv~e~~~~l~~~~  172 (173)
T d1e0sa_         155 ATSGDGLYEGLTWLTSNY  172 (173)
T ss_dssp             TTTTBTHHHHHHHHHHHC
T ss_pred             CCCCcCHHHHHHHHHHhc
Confidence            999999999999998765

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=1.1e-20  Score=147.94  Aligned_cols=155  Identities=14%  Similarity=0.099  Sum_probs=90.9

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE-e---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-L---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~-~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      .++|+++|.+|+|||||+|++++........+..+.+....... .   ...+.+|||||....          ..+   
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~----------~~~---   68 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERF----------QSL---   68 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC---------------------
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhh----------hhH---
Confidence            46899999999999999999998632111222222222222211 1   234789999996321          111   


Q ss_pred             HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh-------hCCcEEEEEecCCCCCchHH--HHHHHHHHHHHHhcCC
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-------SQTKYQVVLTKTDTVFPIDV--ARRAMQIEESLKANNS  237 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~-------~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~  237 (269)
                      .......++++++++|......... ..++..+..       ..+|+++|+||+|+......  ....+.+.   ...  
T Consensus        69 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~---~~~--  143 (175)
T d1ky3a_          69 GVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELA---KSL--  143 (175)
T ss_dssp             --CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHH---HHT--
T ss_pred             HHHHhhccceEEEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHH---HHc--
Confidence            1223345999999999875322211 233333322       25799999999998754221  11112222   222  


Q ss_pred             CCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325          238 LVQPVMMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       238 ~~~~vi~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      ...+++++||++|.|+++++++|.+.+
T Consensus       144 ~~~~~~e~SA~~g~gv~e~f~~l~~~~  170 (175)
T d1ky3a_         144 GDIPLFLTSAKNAINVDTAFEEIARSA  170 (175)
T ss_dssp             TSCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             CCCeEEEEeCCCCcCHHHHHHHHHHHH
Confidence            247899999999999999999997754

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=4.8e-21  Score=149.38  Aligned_cols=153  Identities=14%  Similarity=0.044  Sum_probs=90.9

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE--eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHh
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~--~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~  170 (269)
                      .+|+++|.+|+|||||++++.+.. .....+..+.+....+..  ....+.+|||||...          +..+...|+.
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~----------~~~~~~~~~~   70 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVE-DGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG----------GRWLPGHCMA   70 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC----------CEEEEEEEEETTEEEEEEEEECC-----------------CHHHHHT
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCc-cCCcCCeeeeeecceeeccccccceeeeecccccc----------cceecccchh
Confidence            579999999999999999999873 222222111111111111  235688999999632          1233344444


Q ss_pred             cccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHH-HHHHHHHHHHHhcCCCCCCeEE
Q 024325          171 TRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLVQPVMM  244 (269)
Q Consensus       171 ~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~vi~  244 (269)
                      .   +|++++|+|.+...+... ..++..+..    ..+|+++|.||+|+....+.. ...+.+.+..      +.++++
T Consensus        71 ~---~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~------~~~~~e  141 (168)
T d2gjsa1          71 M---GDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVF------DCKFIE  141 (168)
T ss_dssp             S---CSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHH------TSEEEE
T ss_pred             h---hhhhceeccccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHhc------CCEEEE
Confidence            4   999999999874322221 133333332    347999999999987542211 1112222211      468999


Q ss_pred             eeCCCCCCHHHHHHHHHHhhh
Q 024325          245 VSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       245 vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      +||++|.|++++++.|.+.+.
T Consensus       142 ~Sak~~~~v~~~f~~l~~~i~  162 (168)
T d2gjsa1         142 TSAALHHNVQALFEGVVRQIR  162 (168)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHH
T ss_pred             EeCCCCcCHHHHHHHHHHHHH
Confidence            999999999999999987654

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=7.5e-21  Score=148.95  Aligned_cols=157  Identities=15%  Similarity=0.090  Sum_probs=100.0

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE--EE-e--CCcEEEEcCCCCCCcchhHHHHHHHHHH
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FK-L--GTKLCLVDLPGYGFAYAKEEVKDAWEEL  164 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~--~~-~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~  164 (269)
                      ....+|+++|.+|+|||||++++++..   +...++.|+.+...  .. .  ...+.+|||+|......          +
T Consensus         4 ~~~~Kv~lvG~~~vGKTsLi~r~~~~~---f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~----------~   70 (173)
T d2fn4a1           4 SETHKLVVVGGGGVGKSALTIQFIQSY---FVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGA----------M   70 (173)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHSS---CCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSC----------C
T ss_pred             CCeEEEEEECCCCcCHHHHHHHHHhCC---CCcccccccccceeeEeccCCeeeeeecccccccccccc----------c
Confidence            445799999999999999999999762   34455555544321  11 1  34578899999754321          1


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCcch-HHHHHHHH----hhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCC
Q 024325          165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLV  239 (269)
Q Consensus       165 ~~~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~----~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  239 (269)
                      ...++..   +|++++|+|.....+... ..++..+.    ..+.|+++|.||+|+........  .........   ..
T Consensus        71 ~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~--~~~~~~~~~---~~  142 (173)
T d2fn4a1          71 REQYMRA---GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPR--SEASAFGAS---HH  142 (173)
T ss_dssp             HHHHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCH--HHHHHHHHH---TT
T ss_pred             cchhhcc---ceeeeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccch--hhhhHHHHh---cC
Confidence            1222222   899999999875322211 12333222    24679999999999864321111  111111221   24


Q ss_pred             CCeEEeeCCCCCCHHHHHHHHHHhhhhh
Q 024325          240 QPVMMVSSKSGAGIRSLRTVLSKIARFA  267 (269)
Q Consensus       240 ~~vi~vSa~~g~gi~~L~~~i~~~~~~~  267 (269)
                      .+++.+||++|.|++++++.|.+.+...
T Consensus       143 ~~~~e~Sak~g~gv~e~f~~l~~~i~k~  170 (173)
T d2fn4a1         143 VAYFEASAKLRLNVDEAFEQLVRAVRKY  170 (173)
T ss_dssp             CEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             CEEEEEeCCCCcCHHHHHHHHHHHHHHH
Confidence            7899999999999999999999877543

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.84  E-value=9.2e-21  Score=147.07  Aligned_cols=154  Identities=15%  Similarity=0.137  Sum_probs=96.1

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCce-eEee-EEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHh
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTIN-FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt-~~~~-~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~  170 (269)
                      .+|+++|++|+|||||+++|.+.. .  ...+..|. .+.. ....+..+.+|||||...          +......++ 
T Consensus         3 ~ki~i~G~~~~GKTsLl~~l~~~~-~--~~~~~~T~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~~~~~-   68 (164)
T d1zd9a1           3 MELTLVGLQYSGKTTFVNVIASGQ-F--NEDMIPTVGFNMRKITKGNVTIKLWDIGGQPR----------FRSMWERYC-   68 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC-C--CCSCCCCCSEEEEEEEETTEEEEEEEECCSHH----------HHTTHHHHH-
T ss_pred             EEEEEECCCCCCHHHHHHHHHcCC-C--CCcccccceeeeeeeeeeeEEEEEeecccccc----------ccccccccc-
Confidence            479999999999999999998863 1  22222221 1221 222366789999999521          111122233 


Q ss_pred             cccccceEEEEEeCCCCCCcch-HHHHH-HHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEe
Q 024325          171 TRVSLKRVCLLIDTKWGVKPRD-HELIS-LMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV  245 (269)
Q Consensus       171 ~~~~~d~vl~vid~~~~~~~~~-~~~~~-~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v  245 (269)
                        ..++.+++|+|+........ ...+. .+..   .++|+++|+||+|+..........+.+..  ........+++++
T Consensus        69 --~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~--~~~~~~~~~~~e~  144 (164)
T d1zd9a1          69 --RGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNL--SAIQDREICCYSI  144 (164)
T ss_dssp             --TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTG--GGCCSSCEEEEEC
T ss_pred             --cccchhhcccccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhHHHHHHHHHH--HHHHhCCCEEEEE
Confidence              34999999999874322111 12222 2222   36899999999999765443333222211  1122335678999


Q ss_pred             eCCCCCCHHHHHHHHHHhh
Q 024325          246 SSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       246 Sa~~g~gi~~L~~~i~~~~  264 (269)
                      ||++|+|+++++++|.+.+
T Consensus       145 Sa~~g~gv~e~~~~l~~~~  163 (164)
T d1zd9a1         145 SCKEKDNIDITLQWLIQHS  163 (164)
T ss_dssp             CTTTCTTHHHHHHHHHHTC
T ss_pred             eCcCCcCHHHHHHHHHHcc
Confidence            9999999999999998764

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.84  E-value=2.1e-20  Score=145.75  Aligned_cols=153  Identities=17%  Similarity=0.140  Sum_probs=96.0

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~  169 (269)
                      .+|+++|.+|+|||||+++|++........+.++.+........   ...+.+|||||...          +..+...+ 
T Consensus         6 ~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~----------~~~~~~~~-   74 (169)
T d3raba_           6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQER----------YRTITTAY-   74 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG----------GHHHHHTT-
T ss_pred             EEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchh----------hHHHHHHH-
Confidence            58999999999999999999876312222333333333332222   34688999999632          12222322 


Q ss_pred             hcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHH-HHHHHHHHHHHhcCCCCCCeEE
Q 024325          170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLVQPVMM  244 (269)
Q Consensus       170 ~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~vi~  244 (269)
                        ...+|++++|+|......... ..+......   ...|+++|.||+|+....... .....+.+..      +.++++
T Consensus        75 --~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~------~~~~~e  146 (169)
T d3raba_          75 --YRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHL------GFEFFE  146 (169)
T ss_dssp             --TTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHH------TCEEEE
T ss_pred             --HhcCCEEEEEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccccccchhhhHHHHHHc------CCEEEE
Confidence              345999999999875322111 122232322   357899999999986532211 1111222111      468999


Q ss_pred             eeCCCCCCHHHHHHHHHHhh
Q 024325          245 VSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       245 vSa~~g~gi~~L~~~i~~~~  264 (269)
                      +||++|.|+++++++|.+.+
T Consensus       147 ~Sak~g~gv~e~f~~l~~~i  166 (169)
T d3raba_         147 ASAKDNINVKQTFERLVDVI  166 (169)
T ss_dssp             CBTTTTBSHHHHHHHHHHHH
T ss_pred             ecCCCCcCHHHHHHHHHHHH
Confidence            99999999999999998765

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=9.5e-21  Score=146.99  Aligned_cols=153  Identities=15%  Similarity=0.093  Sum_probs=95.4

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~  169 (269)
                      .+|+++|.+|+|||||+|+|++........+..+.+........   ...+.+|||+|.....          .+...++
T Consensus         3 iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~----------~~~~~~~   72 (164)
T d1z2aa1           3 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFD----------AITKAYY   72 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTT----------CCCHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchh----------hhhhhhh
Confidence            47999999999999999999976211212222222222222221   3468899999964321          1112222


Q ss_pred             hcccccceEEEEEeCCCCCCcch-HHHHHHHHh--hCCcEEEEEecCCCCCchHHH-HHHHHHHHHHHhcCCCCCCeEEe
Q 024325          170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLVQPVMMV  245 (269)
Q Consensus       170 ~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~--~~~p~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~vi~v  245 (269)
                      .   .++++++|+|..+..+... ..++..+..  .+.|+++|.||+|+....... ...+.+.+.   .   +.+++++
T Consensus        73 ~---~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~---~---~~~~~e~  143 (164)
T d1z2aa1          73 R---GAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKR---L---KLRFYRT  143 (164)
T ss_dssp             T---TCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHH---H---TCEEEEC
T ss_pred             c---cCceEEEEEeccchhhhhhcccccccccccCCCceEEEeeccCCcccceeeeehhhHHHHHH---c---CCEEEEe
Confidence            2   3999999999875322222 233444433  378999999999987542221 111222221   1   4689999


Q ss_pred             eCCCCCCHHHHHHHHHHhh
Q 024325          246 SSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       246 Sa~~g~gi~~L~~~i~~~~  264 (269)
                      ||++|.|++++|+.|.+.+
T Consensus       144 Sak~g~~v~e~f~~l~~~~  162 (164)
T d1z2aa1         144 SVKEDLNVSEVFKYLAEKH  162 (164)
T ss_dssp             BTTTTBSSHHHHHHHHHHH
T ss_pred             ccCCCcCHHHHHHHHHHHH
Confidence            9999999999999987754

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.8e-20  Score=146.36  Aligned_cols=150  Identities=19%  Similarity=0.190  Sum_probs=94.8

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE--e---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--L---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~--~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      ++|+++|.+|+|||||+++|++..  ......++++.+.....  .   ...+.+|||||...          +..+...
T Consensus         6 ~Ki~lvG~~~vGKTsLi~~l~~~~--f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~----------~~~~~~~   73 (171)
T d2ew1a1           6 FKIVLIGNAGVGKTCLVRRFTQGL--FPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER----------FRSITQS   73 (171)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSS--CCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG----------GHHHHGG
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCC--CCCcccccccceEEEEEEEECCEEEEEEEEECCCchh----------hHHHHHH
Confidence            689999999999999999999863  22333444444433221  1   34578999999622          1222222


Q ss_pred             HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHH-HHHHHHHHHHHhcCCCCCCe
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLVQPV  242 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~v  242 (269)
                      +   ...++++++|+|.+....... .+++..+..   ...|+++|.||+|+....... ...+.+.+.   .   ..++
T Consensus        74 ~---~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~---~---~~~~  144 (171)
T d2ew1a1          74 Y---YRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEA---Q---DMYY  144 (171)
T ss_dssp             G---STTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHH---H---TCCE
T ss_pred             H---HhccceEEEeeecccchhhhhhhhhhhhhcccccccccEEEEEeecccccccchhhhHHHHHHHh---C---CCEE
Confidence            2   345999999999875322111 233333332   357899999999986532221 111222221   1   4689


Q ss_pred             EEeeCCCCCCHHHHHHHHHHh
Q 024325          243 MMVSSKSGAGIRSLRTVLSKI  263 (269)
Q Consensus       243 i~vSa~~g~gi~~L~~~i~~~  263 (269)
                      ++|||++|+||++++..|...
T Consensus       145 ~~~SAktg~gV~e~f~~l~~~  165 (171)
T d2ew1a1         145 LETSAKESDNVEKLFLDLACR  165 (171)
T ss_dssp             EECCTTTCTTHHHHHHHHHHH
T ss_pred             EEEccCCCCCHHHHHHHHHHH
Confidence            999999999999998877644

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=3e-20  Score=144.40  Aligned_cols=151  Identities=17%  Similarity=0.154  Sum_probs=96.8

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe---eEEEe--CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~---~~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      .+|+++|.+|||||||+|+|++..   ....++.+..+.   .....  ...+.+||++|....          ......
T Consensus         4 ~Ki~viG~~~vGKTsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~----------~~~~~~   70 (166)
T d1ctqa_           4 YKLVVVGAGGVGKSALTIQLIQNH---FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY----------SAMRDQ   70 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCC---CCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGG----------HHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCC---CCCccCCccceeeccceeeeceeeeeeeeeccCcccc----------ccchhh
Confidence            479999999999999999999872   233333232221   12111  345889999997442          112222


Q ss_pred             HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  242 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  242 (269)
                      +...   ++++++|+|..+...... ..++..+..    .++|+++|.||+|+.......+....+.+.   .   ..++
T Consensus        71 ~~~~---~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---~---~~~~  141 (166)
T d1ctqa_          71 YMRT---GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARS---Y---GIPY  141 (166)
T ss_dssp             HHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCCSCHHHHHHHHHH---H---TCCE
T ss_pred             hhhc---ccccceeecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccccccccHHHHHHHHHH---h---CCeE
Confidence            3332   899999999875322211 233333332    357999999999987543222222222222   1   4689


Q ss_pred             EEeeCCCCCCHHHHHHHHHHhhh
Q 024325          243 MMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       243 i~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      +++||++|+|+++++.+|.+.+.
T Consensus       142 ~e~Sak~g~gi~e~f~~i~~~i~  164 (166)
T d1ctqa_         142 IETSAKTRQGVEDAFYTLVREIR  164 (166)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEcCCCCcCHHHHHHHHHHHHH
Confidence            99999999999999999987764

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=3.4e-20  Score=144.71  Aligned_cols=153  Identities=14%  Similarity=0.061  Sum_probs=97.2

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEEe--CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      ++|+++|.+|+|||||++++++..   +...+.+|..+..   ....  ...+.+|||+|....          ..+...
T Consensus         3 ~Ki~viG~~~vGKTsLi~r~~~~~---f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~----------~~~~~~   69 (171)
T d2erxa1           3 YRVAVFGAGGVGKSSLVLRFVKGT---FRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQF----------PAMQRL   69 (171)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTCC---CCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSC----------HHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCC---CCCccCcceeeccccceeeccccceeccccccccccc----------cccccc
Confidence            579999999999999999999862   3344444544432   1111  235778999997543          112222


Q ss_pred             HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh-----hCCcEEEEEecCCCCCchHHH-HHHHHHHHHHHhcCCCCC
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-----SQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLVQ  240 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~-----~~~p~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~  240 (269)
                      +...   +|++++|+|......... ..++..+..     .++|+++|.||+|+....... +..+.+.+.   .   ..
T Consensus        70 ~~~~---a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~---~---~~  140 (171)
T d2erxa1          70 SISK---GHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALART---W---KC  140 (171)
T ss_dssp             HHHH---CSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHH---H---TC
T ss_pred             cccc---eeEEEEEeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHH---c---CC
Confidence            2222   899999999874222111 233332221     357999999999986432221 111222221   1   46


Q ss_pred             CeEEeeCCCCCCHHHHHHHHHHhhhhh
Q 024325          241 PVMMVSSKSGAGIRSLRTVLSKIARFA  267 (269)
Q Consensus       241 ~vi~vSa~~g~gi~~L~~~i~~~~~~~  267 (269)
                      +++++||++|.|++++++.|.+.+...
T Consensus       141 ~~~e~Sak~~~~v~e~f~~l~~~~~~~  167 (171)
T d2erxa1         141 AFMETSAKLNHNVKELFQELLNLEKRR  167 (171)
T ss_dssp             EEEECBTTTTBSHHHHHHHHHHTCCSS
T ss_pred             eEEEEcCCCCcCHHHHHHHHHHHHHHh
Confidence            899999999999999999999877654

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.83  E-value=2.7e-20  Score=145.10  Aligned_cols=153  Identities=13%  Similarity=0.063  Sum_probs=95.2

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEE--eCCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~--~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      ..+|+++|.+|+|||||+|++++..   +...+.+|..+..   ...  ....+.+|||+|....          ..+..
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~---f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~----------~~~~~   70 (168)
T d1u8za_           4 LHKVIMVGSGGVGKSALTLQFMYDE---FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY----------AAIRD   70 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC---CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---C----------HHHHH
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCC---CCcccCCccccccccccccccccccccccccccccch----------hhhhh
Confidence            4689999999999999999998762   3344444443321   111  1346789999997442          22223


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCC
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP  241 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (269)
                      .+++.   +|++++|+|..+...... ..+++.+..    .+.|+++|.||+|+........  +...+.....   +.+
T Consensus        71 ~~~~~---~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~--~~~~~~~~~~---~~~  142 (168)
T d1u8za_          71 NYFRS---GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSV--EEAKNRADQW---NVN  142 (168)
T ss_dssp             HHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCH--HHHHHHHHHH---TCE
T ss_pred             hcccc---cceeEEEeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccH--HHHHHHHHHc---CCe
Confidence            33333   899999999875322211 123333322    3679999999999854321110  1111222221   468


Q ss_pred             eEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          242 VMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       242 vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      ++++||++|.|+++++++|.+.+.
T Consensus       143 ~~e~Sak~g~gv~e~f~~l~~~i~  166 (168)
T d1u8za_         143 YVETSAKTRANVDKVFFDLMREIR  166 (168)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCcCHHHHHHHHHHHHH
Confidence            999999999999999999887653

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=1.5e-20  Score=165.82  Aligned_cols=166  Identities=17%  Similarity=0.193  Sum_probs=111.7

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCc---CccccCCCCCceeEeeEEEe--CCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQW---GVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~---~~~~~s~~~gtt~~~~~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      ..+|+++|.||+|||||+|+|+|..   .....++..+||++...+..  +..+.+|||||++.......      ....
T Consensus        56 ~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~~~~~~l~DtPG~~~~~~~~~------~~~~  129 (400)
T d1tq4a_          56 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPD------TYLE  129 (400)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHH------HHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccCCCeEEEEeCCCcccccccHH------HHHH
Confidence            4689999999999999999999852   11234455668887655443  55699999999976532211      1111


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCch-------------HHHHHHHHHHHHHH
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPI-------------DVARRAMQIEESLK  233 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~-------------~~~~~~~~~~~~~~  233 (269)
                      .  .....+|+++++.|.  .++..+.++++.+...++|+++|+||+|.....             .+....+.+...+.
T Consensus       130 ~--~~~~~~d~~l~~~~~--~~~~~d~~l~~~l~~~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~  205 (400)
T d1tq4a_         130 K--MKFYEYDFFIIISAT--RFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFR  205 (400)
T ss_dssp             H--TTGGGCSEEEEEESS--CCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             H--hhhhcceEEEEecCC--CCCHHHHHHHHHHHHcCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHH
Confidence            1  123347877777764  578888899999999999999999999975221             12233334444455


Q ss_pred             hcCCCCCCeEEeeCCC--CCCHHHHHHHHHHhhhhh
Q 024325          234 ANNSLVQPVMMVSSKS--GAGIRSLRTVLSKIARFA  267 (269)
Q Consensus       234 ~~~~~~~~vi~vSa~~--g~gi~~L~~~i~~~~~~~  267 (269)
                      .......|++.+|+..  ..|+++|.+.+.+.+...
T Consensus       206 ~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~~  241 (400)
T d1tq4a_         206 ENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY  241 (400)
T ss_dssp             HTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred             HcCCCCCCEEEecCCcccccCHHHHHHHHHHHhHHH
Confidence            4444567899999865  569999999998877543

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.83  E-value=2.1e-20  Score=143.54  Aligned_cols=154  Identities=16%  Similarity=0.171  Sum_probs=96.5

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCcee-EeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ-TINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST  171 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~-~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~  171 (269)
                      .+|+++|.+|||||||+|+|++. ....  ..+.+.. ..........+.++|+||....          ......+   
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~----------~~~~~~~---   64 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLG-EIVT--TIPTIGFNVETVEYKNISFTVWDVGGQDKI----------RPLWRHY---   64 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH-CSSC--CCCCSSCCEEEEECSSCEEEEEECCCCGGG----------HHHHHHH---
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC-CCCc--cccceeeEEEEEeeeeEEEEEecCCCcccc----------hhhhhhh---
Confidence            37999999999999999999987 3221  1221111 1122233667899999997442          1122222   


Q ss_pred             ccccceEEEEEeCCCCCCcch--HHHHHHHH---hhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEee
Q 024325          172 RVSLKRVCLLIDTKWGVKPRD--HELISLME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS  246 (269)
Q Consensus       172 ~~~~d~vl~vid~~~~~~~~~--~~~~~~l~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vS  246 (269)
                      ...++++++++|.........  ..+.+.+.   ....|++++.||+|+.+.....+......  .........+++++|
T Consensus        65 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~S  142 (160)
T d1r8sa_          65 FQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLG--LHSLRHRNWYIQATC  142 (160)
T ss_dssp             TTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTT--GGGCSSCCEEEEECB
T ss_pred             hccceeEEEEEEecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHH--HHHHhhCCCEEEEeE
Confidence            234899999999874322211  11222221   23578999999999987654433222111  112223456899999


Q ss_pred             CCCCCCHHHHHHHHHHhh
Q 024325          247 SKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       247 a~~g~gi~~L~~~i~~~~  264 (269)
                      |++|+|+++++++|.+.+
T Consensus       143 Aktg~gi~e~~~~l~~~l  160 (160)
T d1r8sa_         143 ATSGDGLYEGLDWLSNQL  160 (160)
T ss_dssp             TTTTBTHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHhcC
Confidence            999999999999998753

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=4.3e-20  Score=144.24  Aligned_cols=154  Identities=14%  Similarity=0.108  Sum_probs=95.6

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE---E--eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---K--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~---~--~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      .+|+++|.+|+|||||++++++..   +...+.+|..+....   .  ....+.+|||+|.....          .....
T Consensus         6 ~Ki~lvG~~~vGKTsLi~r~~~~~---f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~----------~~~~~   72 (171)
T d2erya1           6 YRLVVVGGGGVGKSALTIQFIQSY---FVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFG----------AMREQ   72 (171)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSC---CCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CC----------HHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCC---CCcccCcccccceeeeeeeccccccccccccccccccc----------ccccc
Confidence            589999999999999999998862   334444444443211   1  13468899999975431          12222


Q ss_pred             HHhcccccceEEEEEeCCCCCCcch-HHHHHHH----HhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLM----ERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  242 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l----~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  242 (269)
                      +...   +|++++|+|.+...+... ..++..+    .....|+++|.||+|+........  ....+....   .+.++
T Consensus        73 ~~~~---~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~--~~~~~~~~~---~~~~~  144 (171)
T d2erya1          73 YMRT---GEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQ--EEGQQLARQ---LKVTY  144 (171)
T ss_dssp             HHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCH--HHHHHHHHH---TTCEE
T ss_pred             cccc---cceEEEeeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchH--HHHHHHHHH---cCCEE
Confidence            2222   899999999875322211 1222222    224689999999999875422211  111222222   24689


Q ss_pred             EEeeCCCCCCHHHHHHHHHHhhhhh
Q 024325          243 MMVSSKSGAGIRSLRTVLSKIARFA  267 (269)
Q Consensus       243 i~vSa~~g~gi~~L~~~i~~~~~~~  267 (269)
                      +.|||++|.||++++..|.+.+...
T Consensus       145 ~e~Sak~~~~i~e~f~~l~~~i~k~  169 (171)
T d2erya1         145 MEASAKIRMNVDQAFHELVRVIRKF  169 (171)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EEEcCCCCcCHHHHHHHHHHHHHHh
Confidence            9999999999999999999887643

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.83  E-value=2.4e-20  Score=151.57  Aligned_cols=152  Identities=16%  Similarity=0.199  Sum_probs=104.4

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCc---------cccCCCCCceeE-------------------------eeEEEe
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGV---------VRTSDKPGLTQT-------------------------INFFKL  136 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~---------~~~s~~~gtt~~-------------------------~~~~~~  136 (269)
                      ..++|+++|+.++|||||+++|+.....         ...+...|++.+                         ..+...
T Consensus         8 ~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~   87 (222)
T d1zunb3           8 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTA   87 (222)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECS
T ss_pred             CcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEecc
Confidence            4578999999999999999999743110         011222222221                         122233


Q ss_pred             CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCc-EEEEEecCCC
Q 024325          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDT  215 (269)
Q Consensus       137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p-~iiv~NK~Dl  215 (269)
                      +..+.++||||+.             .++....+....+|++++|+|+..++.+++.+.+..+...++| +++++||+|+
T Consensus        88 ~~~~~iiD~PGH~-------------dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~~~~~~~gv~~iiv~vNK~D~  154 (222)
T d1zunb3          88 KRKFIIADTPGHE-------------QYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDL  154 (222)
T ss_dssp             SEEEEEEECCCSG-------------GGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTT
T ss_pred             ceEEEEEeccchh-------------hhhhhhccccccCceEEEEeccccCcccchHHHHHHHHHcCCCEEEEEEEcccc
Confidence            5679999999983             4455666667779999999999999999999999999998966 8899999999


Q ss_pred             CCchH--HHHHHHHHHHHHHhcCC--CCCCeEEeeCCCCCCHHH
Q 024325          216 VFPID--VARRAMQIEESLKANNS--LVQPVMMVSSKSGAGIRS  255 (269)
Q Consensus       216 ~~~~~--~~~~~~~~~~~~~~~~~--~~~~vi~vSa~~g~gi~~  255 (269)
                      .+..+  .......+...+.....  ...+++||||++|.|+.+
T Consensus       155 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~~  198 (222)
T d1zunb3         155 NGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN  198 (222)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred             ccccceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCCc
Confidence            86432  23334445554443321  234679999999999843

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.82  E-value=7.2e-20  Score=143.23  Aligned_cols=157  Identities=16%  Similarity=0.157  Sum_probs=100.8

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhc
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST  171 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~  171 (269)
                      ..+|+++|.+|||||||+|+|.+. ......+..+++.. .....+..+.++|++|.......          ...+.  
T Consensus        15 ~~kI~vvG~~~~GKSsLi~rl~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~----------~~~~~--   80 (177)
T d1zj6a1          15 EHKVIIVGLDNAGKTTILYQFSMN-EVVHTSPTIGSNVE-EIVINNTRFLMWDIGGQESLRSS----------WNTYY--   80 (177)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTT-SCEEEECCSCSSCE-EEEETTEEEEEEECCC----CGG----------GHHHH--
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC-CCCccccccceeEE-EEeecceEEEEeccccccccccc----------hhhhh--
Confidence            468999999999999999999998 45555554444332 23334678999999986432111          11122  


Q ss_pred             ccccceEEEEEeCCCCCCcchH-HHHHHH----HhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEee
Q 024325          172 RVSLKRVCLLIDTKWGVKPRDH-ELISLM----ERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS  246 (269)
Q Consensus       172 ~~~~d~vl~vid~~~~~~~~~~-~~~~~l----~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vS  246 (269)
                       ..++.+++++|.++....... ......    .....|+++|+||+|+............+.  .........+++++|
T Consensus        81 -~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~--~~~~~~~~~~~~~~S  157 (177)
T d1zj6a1          81 -TNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLK--LTSIKDHQWHIQACC  157 (177)
T ss_dssp             -TTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHT--GGGCCSSCEEEEECB
T ss_pred             -ccceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcHHHHHHHHH--HHhhHhcCCEEEEEe
Confidence             238899999998754332221 111111    124689999999999976654433332221  111122346799999


Q ss_pred             CCCCCCHHHHHHHHHHhhh
Q 024325          247 SKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       247 a~~g~gi~~L~~~i~~~~~  265 (269)
                      |++|+|+++++++|.+.++
T Consensus       158 a~tg~Gi~e~~~~L~~~lk  176 (177)
T d1zj6a1         158 ALTGEGLCQGLEWMMSRLK  176 (177)
T ss_dssp             TTTTBTHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHhC
Confidence            9999999999999998764

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=3.3e-20  Score=144.26  Aligned_cols=151  Identities=15%  Similarity=0.109  Sum_probs=96.1

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE--EEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~--~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      .+|+++|.+|+|||||++++++..   +...+..+..+...  ...   ...+.+||++|....          ..+...
T Consensus         4 ~Ki~lvG~~~vGKTsLi~r~~~~~---f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~----------~~~~~~   70 (167)
T d1kaoa_           4 YKVVVLGSGGVGKSALTVQFVTGT---FIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF----------ASMRDL   70 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC---CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC----------HHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCC---CCCccCCceeeeeeeeeecCcceEeeccccCCCcccc----------ccchHH
Confidence            589999999999999999999872   33444444433321  111   346889999997542          122223


Q ss_pred             HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHH-HHHHHHHHHHHhcCCCCCC
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLVQP  241 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~  241 (269)
                      +...   +|++++|+|......... ..+...+..    .++|+++|.||+|+....... .....+.+   ..   ..+
T Consensus        71 ~~~~---a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~---~~---~~~  141 (167)
T d1kaoa_          71 YIKN---GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAE---EW---GCP  141 (167)
T ss_dssp             HHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH---HH---TSC
T ss_pred             Hhhc---ccceeeeeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHH---Hc---CCe
Confidence            3332   899999999874322111 122222222    357999999999986532211 11112211   11   468


Q ss_pred             eEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          242 VMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       242 vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      +++|||++|.|++++++.|.+.+-
T Consensus       142 ~~e~Sak~g~~i~e~f~~i~~~i~  165 (167)
T d1kaoa_         142 FMETSAKSKTMVDELFAEIVRQMN  165 (167)
T ss_dssp             EEEECTTCHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCcCHHHHHHHHHHHHc
Confidence            999999999999999999988764

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=2.7e-20  Score=147.10  Aligned_cols=154  Identities=14%  Similarity=0.041  Sum_probs=95.2

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~  169 (269)
                      ++|+++|.+|||||||++++++........+..+.+........   ...+.++||||......             ...
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~-------------~~~   69 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQS-------------LGV   69 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSC-------------SCC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccc-------------ccc
Confidence            58999999999999999999986311111222233333222222   34678999999743211             011


Q ss_pred             hcccccceEEEEEeCCCCCCcch-HHHHHHHHh-------hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCC
Q 024325          170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER-------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP  241 (269)
Q Consensus       170 ~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~-------~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (269)
                      .....+|++++++|......... ..++..+..       .++|+++|+||+|+............+   ...  ....+
T Consensus        70 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~---~~~--~~~~~  144 (184)
T d1vg8a_          70 AFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAW---CYS--KNNIP  144 (184)
T ss_dssp             GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHH---HHH--TTSCC
T ss_pred             ccccCccEEEEeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHHH---HHH--hcCCe
Confidence            22334899999999864222111 233332322       257999999999987643322222221   111  12578


Q ss_pred             eEEeeCCCCCCHHHHHHHHHHhh
Q 024325          242 VMMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       242 vi~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      ++++||++|.||++++++|.+.+
T Consensus       145 ~~e~Sak~~~gI~e~f~~l~~~i  167 (184)
T d1vg8a_         145 YFETSAKEAINVEQAFQTIARNA  167 (184)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHH
T ss_pred             EEEEcCCCCcCHHHHHHHHHHHH
Confidence            99999999999999999987654

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.6e-19  Score=141.32  Aligned_cols=155  Identities=12%  Similarity=0.008  Sum_probs=94.0

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      ..+|+++|.+|+|||||+|++++........+..+.+........   ...+.+|||+|....          ..   ..
T Consensus         6 ~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~----------~~---~~   72 (174)
T d1wmsa_           6 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF----------RS---LR   72 (174)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGG----------HH---HH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCccee----------hh---hh
Confidence            468999999999999999999886311112222222222222222   345689999996432          11   12


Q ss_pred             HhcccccceEEEEEeCCCCCCcch-HHHHHHHHh-------hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCC
Q 024325          169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ  240 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~-------~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  240 (269)
                      ......++++++++|......... ..+++.+..       .+.|+++|.||+|+.......+   ...+.....  ...
T Consensus        73 ~~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~---~~~~~~~~~--~~~  147 (174)
T d1wmsa_          73 TPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTE---EAQAWCRDN--GDY  147 (174)
T ss_dssp             GGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHH---HHHHHHHHT--TCC
T ss_pred             hhhhhccceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHH---HHHHHHHHc--CCC
Confidence            223345899999999874322211 223332221       2579999999999865321111   112222222  246


Q ss_pred             CeEEeeCCCCCCHHHHHHHHHHhh
Q 024325          241 PVMMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       241 ~vi~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      +++++||++|+||++++++|.+.+
T Consensus       148 ~~~e~Sak~~~gI~e~f~~l~~~i  171 (174)
T d1wmsa_         148 PYFETSAKDATNVAAAFEEAVRRV  171 (174)
T ss_dssp             CEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             eEEEEcCCCCcCHHHHHHHHHHHH
Confidence            899999999999999999987764

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.4e-19  Score=140.21  Aligned_cols=153  Identities=18%  Similarity=0.173  Sum_probs=95.7

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe--eEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~--~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      ++|+++|.+|+|||||+|++++..  ......+.++.+.  .....   ...+.+|||+|....          ......
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~----------~~~~~~   68 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDS--FDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERF----------RSLIPS   68 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSC--CCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGG----------GGGHHH
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCC--CCCccccceeeeccceeeccCCCceeeeecccCCcchh----------ccchHH
Confidence            379999999999999999999863  1222223222222  22222   245789999997432          112223


Q ss_pred             HHhcccccceEEEEEeCCCCCCcch-HHHHHHHH---hhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeE
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM  243 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi  243 (269)
                      ++.   .++++++|+|......... ..++..+.   ..+.|+++|.||+|+.+......  +........   ...+++
T Consensus        69 ~~~---~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~--~~~~~~~~~---~~~~~~  140 (164)
T d1yzqa1          69 YIR---DSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSI--EEGERKAKE---LNVMFI  140 (164)
T ss_dssp             HHT---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCH--HHHHHHHHH---TTCEEE
T ss_pred             Hhh---ccceEEEeeccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhhhH--HHHHHHHHH---cCCEEE
Confidence            333   3999999999875322222 22332222   24689999999999875322211  112222222   246899


Q ss_pred             EeeCCCCCCHHHHHHHHHHhhh
Q 024325          244 MVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       244 ~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      +|||++|+|+++++++|.+.+.
T Consensus       141 e~SAk~g~~v~e~f~~i~~~l~  162 (164)
T d1yzqa1         141 ETSAKAGYNVKQLFRRVAAALP  162 (164)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHSC
T ss_pred             EecCCCCcCHHHHHHHHHHhhC
Confidence            9999999999999999988764

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=7.7e-20  Score=143.34  Aligned_cols=154  Identities=14%  Similarity=0.093  Sum_probs=93.0

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~  169 (269)
                      .+|+++|.+|||||||++++++........+..+++........   ...+.+|||||....          ..+...+.
T Consensus         5 ~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~----------~~~~~~~~   74 (175)
T d2f9la1           5 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERY----------RRITSAYY   74 (175)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGT----------TCCCHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHH----------HHHHHHHh
Confidence            58999999999999999999886311111222222222222222   246889999995321          11111222


Q ss_pred             hcccccceEEEEEeCCCCCCcc-hHHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEe
Q 024325          170 STRVSLKRVCLLIDTKWGVKPR-DHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV  245 (269)
Q Consensus       170 ~~~~~~d~vl~vid~~~~~~~~-~~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v  245 (269)
                         ..++++++|+|.....+.. ...++..+..   .+.|+++|.||+|+.+........  ......   ....+++++
T Consensus        75 ---~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~~~--~~~~~~---~~~~~~~e~  146 (175)
T d2f9la1          75 ---RGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDE--ARAFAE---KNNLSFIET  146 (175)
T ss_dssp             ---TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHH--HHHHHH---HTTCEEEEC
T ss_pred             ---hccCeEEEEEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccccccchHHH--HHHhhc---ccCceEEEE
Confidence               2389999999987532111 1233443433   357999999999987532211111  111111   125789999


Q ss_pred             eCCCCCCHHHHHHHHHHhh
Q 024325          246 SSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       246 Sa~~g~gi~~L~~~i~~~~  264 (269)
                      ||++|.|+++++++|.+.+
T Consensus       147 Sa~~g~~i~e~f~~l~~~i  165 (175)
T d2f9la1         147 SALDSTNVEEAFKNILTEI  165 (175)
T ss_dssp             CTTTCTTHHHHHHHHHHHH
T ss_pred             ecCCCcCHHHHHHHHHHHH
Confidence            9999999999998887765

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=5.2e-20  Score=142.99  Aligned_cols=153  Identities=18%  Similarity=0.206  Sum_probs=94.8

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee--EEEe-C--CcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~--~~~~-~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      .++|+++|.+|+|||||++++++..  ......|.++.+..  .... +  ..+.+|||||....          ..+..
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~--~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~----------~~~~~   69 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDK--FNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERF----------RTITT   69 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCC--CCC-------CCEEEEEEESSSCEEEEEEECCTTGGGT----------SCCCH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCC--CCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhh----------HHHHH
Confidence            4689999999999999999999873  12222233333332  2221 2  35778999996321          11122


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcchH-HHHHHHH---hhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  242 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~~-~~~~~l~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  242 (269)
                      .++   ..++++++|+|..+..+.... .+.....   ....|++++.||.|+.......+..+.+....      +.++
T Consensus        70 ~~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~~~~~~~~~~~~~~~~------~~~~  140 (166)
T d1g16a_          70 AYY---RGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKEL------GIPF  140 (166)
T ss_dssp             HHH---TTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHH------TCCE
T ss_pred             HHH---hcCCEEEEEEECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhhhhhhHHHHHHHHHhc------CCeE
Confidence            233   239999999999853222221 1112222   23578999999999886543333333332221      4789


Q ss_pred             EEeeCCCCCCHHHHHHHHHHhhh
Q 024325          243 MMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       243 i~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      +++||++|+|+++++++|.+.+.
T Consensus       141 ~~~Sa~~~~~v~e~f~~l~~~i~  163 (166)
T d1g16a_         141 IESSAKNDDNVNEIFFTLAKLIQ  163 (166)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHHH
T ss_pred             EEECCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999988764

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.8e-19  Score=139.89  Aligned_cols=152  Identities=14%  Similarity=0.113  Sum_probs=94.6

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe--eEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~--~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      ++|+++|.+|+|||||++++++..  ......+.++.+.  .....   ...+.+|||||....          ..+...
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~----------~~~~~~   72 (166)
T d1z0fa1           5 FKYIIIGDMGVGKSCLLHQFTEKK--FMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERF----------RAVTRS   72 (166)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC--CCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGT----------CHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCC--CCCcccccccccceeEEEEECCEEEEEEEeccCCchhH----------HHHHHH
Confidence            689999999999999999999863  1222222233332  22221   336889999996321          122233


Q ss_pred             HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeE
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM  243 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi  243 (269)
                      +.+.   +|++++|+|..+..+... ..++..+..   ...|+++|.||+|+........  +........   ...+++
T Consensus        73 ~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~--~~~~~~~~~---~~~~~~  144 (166)
T d1z0fa1          73 YYRG---AAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTY--EEAKQFAEE---NGLLFL  144 (166)
T ss_dssp             HHHT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCH--HHHHHHHHH---TTCEEE
T ss_pred             HhcC---CcEEEEEeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchhhcccHH--HHHHHHHHH---cCCEEE
Confidence            3333   999999999874321111 233333332   3578999999999864332211  111222222   246899


Q ss_pred             EeeCCCCCCHHHHHHHHHHhh
Q 024325          244 MVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       244 ~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      ++||++|.|+++++..|.+.+
T Consensus       145 e~Saktg~~v~e~f~~i~~~i  165 (166)
T d1z0fa1         145 EASAKTGENVEDAFLEAAKKI  165 (166)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHh
Confidence            999999999999999987753

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=6.9e-20  Score=146.05  Aligned_cols=156  Identities=15%  Similarity=0.095  Sum_probs=97.8

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~  169 (269)
                      ++|+++|.+|+|||||++++++........+..+++.......   ....+.+|||||....          ..+...+ 
T Consensus         7 ~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~----------~~~~~~~-   75 (194)
T d2bcgy1           7 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERF----------RTITSSY-   75 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTT----------TCCCGGG-
T ss_pred             EEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhh----------HHHHHHH-
Confidence            6899999999999999999997632222333344443332222   2456889999996431          1111122 


Q ss_pred             hcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEe
Q 024325          170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV  245 (269)
Q Consensus       170 ~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v  245 (269)
                        ...++++++|+|.+....... ..+...+..   ...|+++|.||+|+.........  .......   ....+++++
T Consensus        76 --~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~--~~~~~~~---~~~~~~~e~  148 (194)
T d2bcgy1          76 --YRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYD--VAKEFAD---ANKMPFLET  148 (194)
T ss_dssp             --GTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHH--HHHHHHH---HTTCCEEEC
T ss_pred             --hccCCEEEEEEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccccccchhHH--HHhhhhh---ccCcceEEE
Confidence              234899999999874322221 122222322   35799999999999864332211  1111111   125789999


Q ss_pred             eCCCCCCHHHHHHHHHHhhhh
Q 024325          246 SSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       246 Sa~~g~gi~~L~~~i~~~~~~  266 (269)
                      ||++|.|++++++.|.+.+..
T Consensus       149 SAk~g~gi~e~f~~l~~~i~~  169 (194)
T d2bcgy1         149 SALDSTNVEDAFLTMARQIKE  169 (194)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHH
T ss_pred             ecCcCccHHHHHHHHHHHHHH
Confidence            999999999999999876543

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=3.8e-20  Score=144.52  Aligned_cols=150  Identities=13%  Similarity=0.071  Sum_probs=93.1

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCce-eEee--EEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt-~~~~--~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      .+|+++|.+|+|||||++++++..   +...+..|. .+..  ....   ...+.+|||||...          +..+..
T Consensus         4 ~Ki~vvG~~~vGKTsli~~~~~~~---f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~----------~~~~~~   70 (170)
T d1i2ma_           4 FKLVLVGDGGTGKTTFVKRHLTGE---FEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK----------FGGLRD   70 (170)
T ss_dssp             EEEEEEECTTSSHHHHHHTTC--------CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHH----------HSSCGG
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCC---CCcccccceeccccccccccccccccccccccccccc----------cceecc
Confidence            479999999999999999998762   222322222 1221  1111   34689999999411          111222


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh--hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeE
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM  243 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi  243 (269)
                      .+   ...++++++|+|.++..+... ..++..+..  .++|+++|.||+|+.......+...    .   ......+++
T Consensus        71 ~~---~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~----~---~~~~~~~~~  140 (170)
T d1i2ma_          71 GY---YIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIV----F---HRKKNLQYY  140 (170)
T ss_dssp             GG---TTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHHCSCCEEEEEECCCCSCSCCTTTSHH----H---HSSCSSEEE
T ss_pred             hh---cccccchhhccccccccccchhHHHHHHHhhccCCCceeeecchhhhhhhhhhhHHHH----H---HHHcCCEEE
Confidence            22   334999999999986433222 233333322  3689999999999976533221111    1   112357899


Q ss_pred             EeeCCCCCCHHHHHHHHHHhhh
Q 024325          244 MVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       244 ~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      ++||++|.|+++++++|.+.+-
T Consensus       141 e~Sak~~~~v~e~f~~l~~~l~  162 (170)
T d1i2ma_         141 DISAKSNYNFEKPFLWLARKLI  162 (170)
T ss_dssp             EEBTTTTBTTTHHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHHc
Confidence            9999999999999999987653

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=2e-19  Score=140.64  Aligned_cols=154  Identities=11%  Similarity=0.029  Sum_probs=93.5

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~  169 (269)
                      .+|+++|.+|+|||||++++++........+..+.+........   ...+.+|||||....          ..+...  
T Consensus         6 ~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----------~~~~~~--   73 (174)
T d2bmea1           6 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF----------RSVTRS--   73 (174)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGG----------HHHHHT--
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhh----------hhhHHH--
Confidence            58999999999999999999876211111122222222111111   345889999996321          222222  


Q ss_pred             hcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEe
Q 024325          170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV  245 (269)
Q Consensus       170 ~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v  245 (269)
                       ....++++++|+|......... ..++..+..   .++|+++|.||+|+.........  ........   ...+++++
T Consensus        74 -~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~--~~~~~~~~---~~~~~~e~  147 (174)
T d2bmea1          74 -YYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFL--EASRFAQE---NELMFLET  147 (174)
T ss_dssp             -TSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHH--HHHHHHHH---TTCEEEEC
T ss_pred             -HhhhCCEEEEEEecccchhHHHHhhhhcccccccCCceEEEEEEecccccchhchhhh--HHHHHHHh---CCCEEEEe
Confidence             2345999999999875322211 122222222   35899999999998643222111  11111111   24689999


Q ss_pred             eCCCCCCHHHHHHHHHHhh
Q 024325          246 SSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       246 Sa~~g~gi~~L~~~i~~~~  264 (269)
                      ||++|.|+++++++|.+.+
T Consensus       148 Sak~~~gi~e~f~~l~~~i  166 (174)
T d2bmea1         148 SALTGENVEEAFVQCARKI  166 (174)
T ss_dssp             CTTTCTTHHHHHHHHHHHH
T ss_pred             eCCCCcCHHHHHHHHHHHH
Confidence            9999999999999887764

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.9e-19  Score=141.36  Aligned_cols=154  Identities=18%  Similarity=0.116  Sum_probs=95.0

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~  169 (269)
                      ++|+++|.+|+|||||+|+|.+........+..+.+.......   ....+.+|||||.....          .+...+.
T Consensus         8 iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~~~~   77 (177)
T d1x3sa1           8 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFR----------TLTPSYY   77 (177)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGC----------CSHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhH----------HHHHHHH
Confidence            5799999999999999999998731111222222222222222   23468999999974321          1122233


Q ss_pred             hcccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEE
Q 024325          170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM  244 (269)
Q Consensus       170 ~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~  244 (269)
                      .   .+|++++|+|......... ..++..+..    ...|++++.||.|.............   ....   ...++++
T Consensus        78 ~---~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v~~~~~~~---~~~~---~~~~~~e  148 (177)
T d1x3sa1          78 R---GAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLK---FARK---HSMLFIE  148 (177)
T ss_dssp             T---TCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHH---HHHH---TTCEEEE
T ss_pred             h---cCCEEEEEEECCCccccccchhhhhhhcccccccceeeEEEeeccccccccccHHHHHH---HHHH---CCCEEEE
Confidence            2   3899999999864222111 233333332    24788999999998754322221122   2222   2468999


Q ss_pred             eeCCCCCCHHHHHHHHHHhhh
Q 024325          245 VSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       245 vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      +||++|+|+++++++|.+.+-
T Consensus       149 ~Sa~tg~gv~e~f~~l~~~l~  169 (177)
T d1x3sa1         149 ASAKTCDGVQCAFEELVEKII  169 (177)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHHc
Confidence            999999999999999887653

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=3.6e-19  Score=139.64  Aligned_cols=154  Identities=12%  Similarity=0.048  Sum_probs=95.6

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE--EE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~--~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      .+|+++|.+|+|||||++++++..   +...+.+|..+...  ..   ....+.+|||+|....          ..+...
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~~~---f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~----------~~~~~~   69 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSKDQ---FPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDY----------DRLRPL   69 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSC---CCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG----------TTTGGG
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCC---CCCCcCCceeeeccccccccccceeeeccccCccchh----------cccchh
Confidence            379999999999999999999872   23333333322211  11   1345899999997331          111122


Q ss_pred             HHhcccccceEEEEEeCCCCCCcc--hHHHHHHHHh--hCCcEEEEEecCCCCCchHHHHHH----------HHHHHHHH
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPR--DHELISLMER--SQTKYQVVLTKTDTVFPIDVARRA----------MQIEESLK  233 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~--~~~~~~~l~~--~~~p~iiv~NK~Dl~~~~~~~~~~----------~~~~~~~~  233 (269)
                         ....+|++++|+|.++..+..  ...+...+..  .+.|+++|.||+|+..........          ........
T Consensus        70 ---~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~  146 (177)
T d1kmqa_          70 ---SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMAN  146 (177)
T ss_dssp             ---GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHH
T ss_pred             ---hcccchhhhhhcccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHH
Confidence               233499999999987532211  1223333333  368999999999998654322111          11111112


Q ss_pred             hcCCCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325          234 ANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       234 ~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      ..  ...++++|||++|.|++++|+.|.+.+
T Consensus       147 ~~--~~~~~~E~SAkt~~gi~e~F~~i~~~~  175 (177)
T d1kmqa_         147 RI--GAFGYMECSAKTKDGVREVFEMATRAA  175 (177)
T ss_dssp             HT--TCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             Hc--CCcEEEEecCCCCcCHHHHHHHHHHHH
Confidence            21  135789999999999999999988754

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=2.1e-19  Score=142.13  Aligned_cols=157  Identities=11%  Similarity=-0.021  Sum_probs=97.9

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE--E---eCCcEEEEcCCCCCCcchhHHHHHHHHHH
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF--K---LGTKLCLVDLPGYGFAYAKEEVKDAWEEL  164 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~--~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~  164 (269)
                      ...++|+++|.+|+|||||++++++..   +...+.+|+.+....  .   ....+.+|||+|.....          .+
T Consensus         7 ~~~~Ki~lvG~~~vGKTsLi~r~~~~~---f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~----------~~   73 (185)
T d2atxa1           7 ALMLKCVVVGDGAVGKTCLLMSYANDA---FPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYD----------RL   73 (185)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHSS---CCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSST----------TT
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHhhCC---CCCcCCCceeeeeeEEEeeCCceEEeecccccccchhh----------hh
Confidence            445789999999999999999999862   344444444333211  1   12457899999974321          11


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCcch--HHHHHHHHh--hCCcEEEEEecCCCCCchHHHHHH----------HHHHH
Q 024325          165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFPIDVARRA----------MQIEE  230 (269)
Q Consensus       165 ~~~~~~~~~~~d~vl~vid~~~~~~~~~--~~~~~~l~~--~~~p~iiv~NK~Dl~~~~~~~~~~----------~~~~~  230 (269)
                      ...+   ...+|++++|+|..+..+...  ..+...+..  .+.|+++|.||+|+.+........          +...+
T Consensus        74 ~~~~---~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~  150 (185)
T d2atxa1          74 RPLS---YPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQK  150 (185)
T ss_dssp             GGGG---CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHH
T ss_pred             hhhc---ccccceeeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHH
Confidence            1222   234999999999875322111  223333332  367999999999998654322111          11111


Q ss_pred             HHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325          231 SLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       231 ~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      .....  ...+++++||++|.|++++|+.+.+.+
T Consensus       151 ~a~~~--~~~~~~E~SAk~~~gv~e~F~~li~~i  182 (185)
T d2atxa1         151 LAKEI--GACCYVECSALTQKGLKTVFDEAIIAI  182 (185)
T ss_dssp             HHHHH--TCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHc--CCCEEEEecCCCCcCHHHHHHHHHHHH
Confidence            11111  136789999999999999999887654

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=4.7e-19  Score=138.07  Aligned_cols=153  Identities=19%  Similarity=0.221  Sum_probs=92.1

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCcccc--CCCCCceeEee-EEEeC--CcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRT--SDKPGLTQTIN-FFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~--s~~~gtt~~~~-~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      .+|+++|.+|+|||||++++++.. ....  .+..+.+.... +...+  ..+.+|||||...          +..+...
T Consensus         7 fKi~vvG~~~vGKTsli~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~----------~~~~~~~   75 (170)
T d2g6ba1           7 FKVMLVGDSGVGKTCLLVRFKDGA-FLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQER----------FRSVTHA   75 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC-CCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC------------------C
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCC-CCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchh----------hHHHHHH
Confidence            589999999999999999998762 1111  11112222221 22222  3678999999632          1222222


Q ss_pred             HHhcccccceEEEEEeCCCCCCcch-HHHHHHH-H--hhCCcEEEEEecCCCCCchHHHH-HHHHHHHHHHhcCCCCCCe
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLM-E--RSQTKYQVVLTKTDTVFPIDVAR-RAMQIEESLKANNSLVQPV  242 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l-~--~~~~p~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~v  242 (269)
                      +   ...+|++++|+|.....+... ..+...+ .  ....|+++|.||+|+........ ....+.   ...   ..++
T Consensus        76 ~---~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~---~~~---~~~~  146 (170)
T d2g6ba1          76 Y---YRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLA---KEY---GLPF  146 (170)
T ss_dssp             C---GGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHH---HHH---TCCE
T ss_pred             h---hcCCceeEEEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhcccccHHHHHHHH---HHc---CCEE
Confidence            2   334899999999874322111 1222222 2  23578999999999886533221 111222   111   4689


Q ss_pred             EEeeCCCCCCHHHHHHHHHHhhh
Q 024325          243 MMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       243 i~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      +++||++|.|+++++++|.+.+.
T Consensus       147 ~e~Sak~g~gi~e~f~~l~~~i~  169 (170)
T d2g6ba1         147 METSAKTGLNVDLAFTAIAKELK  169 (170)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEeCCCCcCHHHHHHHHHHHcC
Confidence            99999999999999999988764

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=2.9e-19  Score=138.84  Aligned_cols=152  Identities=13%  Similarity=0.091  Sum_probs=94.3

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe---eEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~---~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      .+|+++|.+|+|||||+++|.+..   +...+..|+...   .....   ...+.+|||+|....          ..+..
T Consensus         5 ~Ki~lvG~~~vGKTsli~rl~~~~---f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~----------~~~~~   71 (167)
T d1z0ja1           5 LKVCLLGDTGVGKSSIMWRFVEDS---FDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERF----------RALAP   71 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC---CCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG----------GGGTH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCC---CCcccccccccccccccccccccccceeeeecCCchhh----------hHHHH
Confidence            479999999999999999999873   233333333222   22222   234679999997432          12223


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHH---hhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  242 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  242 (269)
                      .++..   ++++++|+|......... ..++....   ....|+++|.||+|+........  ....+....   ...++
T Consensus        72 ~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~--~~~~~~~~~---~~~~~  143 (167)
T d1z0ja1          72 MYYRG---SAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVME--RDAKDYADS---IHAIF  143 (167)
T ss_dssp             HHHTT---CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCH--HHHHHHHHH---TTCEE
T ss_pred             HHHhh---ccceEEEeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhccccchhH--HHHHHHHHH---cCCEE
Confidence            33333   899999999864211111 11222222   23679999999999964322111  111121222   24689


Q ss_pred             EEeeCCCCCCHHHHHHHHHHhhh
Q 024325          243 MMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       243 i~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      +++||++|.||++++..|.+.+.
T Consensus       144 ~e~SAk~~~nV~e~f~~l~~~i~  166 (167)
T d1z0ja1         144 VETSAKNAININELFIEISRRIP  166 (167)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHCC
T ss_pred             EEEecCCCCCHHHHHHHHHHhCC
Confidence            99999999999999999988763

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=4.5e-19  Score=138.16  Aligned_cols=153  Identities=17%  Similarity=0.125  Sum_probs=95.7

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe--eEEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~--~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      ..+|+++|.+|+|||||++++++..   +...+..|..+.  ....   ....+.+|||+|......          +..
T Consensus         4 t~Ki~lvG~~~vGKTsll~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~----------~~~   70 (169)
T d1x1ra1           4 TYKLVVVGDGGVGKSALTIQFFQKI---FVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSA----------MRE   70 (169)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSS---CCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCS----------SHH
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCC---CCcccCcceeecccccccccccccccccccccccccccc----------chh
Confidence            4689999999999999999999862   222222232221  1111   234678999999744211          112


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHH----hhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCC
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP  241 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~----~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (269)
                      .+++.   +|++++|+|..+..+... ..++..+.    ..+.|+++|.||+|+........  +...+.....   +.+
T Consensus        71 ~~~~~---~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~--e~~~~~~~~~---~~~  142 (169)
T d1x1ra1          71 QYMRT---GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTR--DQGKEMATKY---NIP  142 (169)
T ss_dssp             HHHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCH--HHHHHHHHHH---TCC
T ss_pred             hhhhh---ccEEEEecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeeh--hhHHHHHHHc---CCE
Confidence            22222   899999999875322221 22333332    23689999999999976533211  1111222221   468


Q ss_pred             eEEeeCCCCC-CHHHHHHHHHHhhh
Q 024325          242 VMMVSSKSGA-GIRSLRTVLSKIAR  265 (269)
Q Consensus       242 vi~vSa~~g~-gi~~L~~~i~~~~~  265 (269)
                      ++++||++|. ||+++|..|.+.+.
T Consensus       143 ~~e~Sak~~~~nV~~~F~~l~~~i~  167 (169)
T d1x1ra1         143 YIETSAKDPPLNVDKTFHDLVRVIR  167 (169)
T ss_dssp             EEEEBCSSSCBSHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCcCHHHHHHHHHHHHH
Confidence            9999999986 99999999987654

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=3.1e-19  Score=138.67  Aligned_cols=153  Identities=14%  Similarity=0.050  Sum_probs=96.4

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE--E---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF--K---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~--~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      .+|+++|.+|+|||||+++++...   +...+.++..+....  .   ....+.+||++|.....          .+...
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~~~---f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~----------~~~~~   70 (167)
T d1c1ya_           4 YKLVVLGSGGVGKSALTVQFVQGI---FVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFT----------AMRDL   70 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCC---CCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSST----------THHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC---CCCccCCccccccceeEEeeeeEEEeccccccCccccc----------ccccc
Confidence            479999999999999999999873   333433343332211  1   13458899999975531          11223


Q ss_pred             HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  242 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  242 (269)
                      |+..   +|++++|+|..+..+... ..++..+..    .+.|+++|.||+|+........  +.........  ...++
T Consensus        71 ~~~~---~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~--~~~~~~~~~~--~~~~~  143 (167)
T d1c1ya_          71 YMKN---GQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGK--EQGQNLARQW--CNCAF  143 (167)
T ss_dssp             HHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCH--HHHHHHHHHT--TSCEE
T ss_pred             cccc---cceeEEeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccch--hHHHHHHHHh--CCCEE
Confidence            3332   899999999975322222 223333322    3579999999999875322111  1111111121  24789


Q ss_pred             EEeeCCCCCCHHHHHHHHHHhhh
Q 024325          243 MMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       243 i~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      +.+||++|+|++++|++|.+.+.
T Consensus       144 ~e~Sak~g~gv~e~F~~l~~~i~  166 (167)
T d1c1ya_         144 LESSAKSKINVNEIFYDLVRQIN  166 (167)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHHT
T ss_pred             EEEcCCCCcCHHHHHHHHHHHhc
Confidence            99999999999999999987653

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.1e-18  Score=135.64  Aligned_cols=152  Identities=14%  Similarity=0.086  Sum_probs=95.4

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeE-e--eEEEe--CCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-I--NFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~-~--~~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      .+|+++|.+|+|||||++++++..   +...+.+|... .  .....  ...+.+|||+|.....           ....
T Consensus         3 iKi~lvG~~~vGKTsli~r~~~~~---f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-----------~~~~   68 (168)
T d2atva1           3 VKLAIFGRAGVGKSALVVRFLTKR---FIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI-----------QREG   68 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC---CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH-----------HHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCC---CCCccCCceeccccccccccccceEEEEeecccccccc-----------cchh
Confidence            589999999999999999999872   33444433322 1  11222  2468899999975421           1112


Q ss_pred             HHhcccccceEEEEEeCCCCCCcchH-HHHHHH---H-hhCCcEEEEEecCCCCCchHH-HHHHHHHHHHHHhcCCCCCC
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLM---E-RSQTKYQVVLTKTDTVFPIDV-ARRAMQIEESLKANNSLVQP  241 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~~-~~~~~l---~-~~~~p~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~  241 (269)
                      +...   ++++++|+|.......... .+....   . ..+.|+++|.||+|+...... .+..+.+.+   ..   +.+
T Consensus        69 ~~~~---~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~---~~---~~~  139 (168)
T d2atva1          69 HMRW---GEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLAT---EL---ACA  139 (168)
T ss_dssp             HHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH---HH---TSE
T ss_pred             hhcc---cccceeecccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHH---Hh---CCe
Confidence            2222   8999999998753222221 122222   1 236899999999998643221 111122222   21   468


Q ss_pred             eEEeeCCCCCC-HHHHHHHHHHhhhhh
Q 024325          242 VMMVSSKSGAG-IRSLRTVLSKIARFA  267 (269)
Q Consensus       242 vi~vSa~~g~g-i~~L~~~i~~~~~~~  267 (269)
                      ++.+||++|.| |+++|..|.+.+..-
T Consensus       140 ~~e~Saktg~gnV~e~F~~l~~~i~~~  166 (168)
T d2atva1         140 FYECSACTGEGNITEIFYELCREVRRR  166 (168)
T ss_dssp             EEECCTTTCTTCHHHHHHHHHHHHHHH
T ss_pred             EEEEccccCCcCHHHHHHHHHHHHHHh
Confidence            99999999985 999999998876544

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=3.7e-19  Score=136.69  Aligned_cols=154  Identities=16%  Similarity=0.093  Sum_probs=97.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhccc
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV  173 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (269)
                      +|+++|++|||||||+|+|++. ..+.+.+..+++..... ..+....++|++|.....             ........
T Consensus         2 KI~liG~~nvGKSSLln~l~~~-~~~~~~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~-------------~~~~~~~~   66 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND-RLATLQPTWHPTSEELA-IGNIKFTTFDLGGHIQAR-------------RLWKDYFP   66 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS-CCCCCCCCCSCEEEEEC-CTTCCEEEEECCCSGGGG-------------GGGGGGCT
T ss_pred             EEEEECCCCCCHHHHHHHHhCC-CCCeeeceeeEeEEEec-cCCeeEEEEeeccchhhh-------------hhHhhhhh
Confidence            6999999999999999999998 45555555554444322 236678999999864321             11122334


Q ss_pred             ccceEEEEEeCCCCCCcch-HHHHHHHH----hhCCcEEEEEecCCCCCchHHHHHHHHHHHH----HHh-cCCCCCCeE
Q 024325          174 SLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFPIDVARRAMQIEES----LKA-NNSLVQPVM  243 (269)
Q Consensus       174 ~~d~vl~vid~~~~~~~~~-~~~~~~l~----~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~----~~~-~~~~~~~vi  243 (269)
                      .++.+++++|.+....... ..+.....    ..+.|++++.||.|+.......+..+.+...    ... ......+++
T Consensus        67 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  146 (166)
T d2qtvb1          67 EVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVF  146 (166)
T ss_dssp             TCSEEEEEEETTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCCHHHHHHHHTCSSCCC---CCSSCCEEEE
T ss_pred             heeeeeeeccccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccccCCHHHHHHHhhhhhhhHHHhhcccCCCEEE
Confidence            4889999999875322211 11111111    2367899999999997654333332222100    000 011234689


Q ss_pred             EeeCCCCCCHHHHHHHHHH
Q 024325          244 MVSSKSGAGIRSLRTVLSK  262 (269)
Q Consensus       244 ~vSa~~g~gi~~L~~~i~~  262 (269)
                      ++||++|+|++++++||.+
T Consensus       147 ~~SA~tg~Gv~e~~~~l~~  165 (166)
T d2qtvb1         147 MCSVVMRNGYLEAFQWLSQ  165 (166)
T ss_dssp             EEBTTTTBSHHHHHHHHTT
T ss_pred             EeeCCCCCCHHHHHHHHhC
Confidence            9999999999999999965

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=8.5e-20  Score=141.90  Aligned_cols=151  Identities=17%  Similarity=0.093  Sum_probs=94.0

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCce-eEee-EEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTIN-FFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt-~~~~-~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      .+|+++|.+|+|||||+++|++..   +...+.+|. .+.. ...   ....+.+|||+|......          +...
T Consensus         5 ~Kv~liG~~~vGKTsLl~~~~~~~---f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~----------~~~~   71 (167)
T d1xtqa1           5 RKIAILGYRSVGKSSLTIQFVEGQ---FVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSI----------FPQT   71 (167)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSC---CCSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCC----------CCGG
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCC---CCcccCcceecccceEEecCcEEEEeeeccccccccccc----------ccch
Confidence            589999999999999999998762   233322232 2221 111   134578999999754211          1111


Q ss_pred             HHhcccccceEEEEEeCCCCCCcch-HHHHHHHH----hhCCcEEEEEecCCCCCchHHH-HHHHHHHHHHHhcCCCCCC
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLVQP  241 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~----~~~~p~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~  241 (269)
                      +   ...+|++++|+|.....+... ..++..+.    ..++|+++|.||+|+....... +..+.+.+.   .   +.+
T Consensus        72 ~---~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~---~---~~~  142 (167)
T d1xtqa1          72 Y---SIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAES---W---NAA  142 (167)
T ss_dssp             G---TSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH---H---TCE
T ss_pred             h---hhhhhhhhhhcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHH---c---CCE
Confidence            1   234999999999875322221 12222222    2468999999999986532211 111222221   1   468


Q ss_pred             eEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          242 VMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       242 vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      ++++||++|.|++++++.|...+.
T Consensus       143 ~~e~Sak~~~~v~~~f~~li~~~~  166 (167)
T d1xtqa1         143 FLESSAKENQTAVDVFRRIILEAE  166 (167)
T ss_dssp             EEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             EEEEecCCCCCHHHHHHHHHHHhc
Confidence            899999999999999999887654

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=6.7e-19  Score=136.77  Aligned_cols=151  Identities=15%  Similarity=0.074  Sum_probs=92.5

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCcee-E--eeEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ-T--INFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~-~--~~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      .+|+++|.+|+|||||++++++..   +...++.|.. +  ......   ...+.+|||+|....          ..+..
T Consensus         4 fKivlvG~~~vGKTsLi~r~~~~~---f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~----------~~~~~   70 (167)
T d1z08a1           4 FKVVLLGEGCVGKTSLVLRYCENK---FNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERF----------HALGP   70 (167)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHCC---CCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-----------------C
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCC---CCcccccccccchheeeeccCCccceeeeeccCCccee----------cccch
Confidence            589999999999999999999762   2233322222 2  222221   346889999997331          11111


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHH---hhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCe
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  242 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  242 (269)
                         .....+|++++|+|.+...+... ..+++.+.   ....|+++|.||+|+........  +...+....   .+.++
T Consensus        71 ---~~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~--~e~~~~a~~---~~~~~  142 (167)
T d1z08a1          71 ---IYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSI--QEAESYAES---VGAKH  142 (167)
T ss_dssp             ---CSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCH--HHHHHHHHH---TTCEE
T ss_pred             ---hhccCCceeEEEEeCCchhHHHhhhhhhhhcccccccccceeeeccccccccccccch--HHHHHHHHH---cCCeE
Confidence               22345999999999875322211 12222222   34678999999999875422111  111222222   24689


Q ss_pred             EEeeCCCCCCHHHHHHHHHHhh
Q 024325          243 MMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       243 i~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      +++||++|.|+++++.+|.+.+
T Consensus       143 ~e~Sak~~~~v~e~F~~l~~~i  164 (167)
T d1z08a1         143 YHTSAKQNKGIEELFLDLCKRM  164 (167)
T ss_dssp             EEEBTTTTBSHHHHHHHHHHHH
T ss_pred             EEEecCCCcCHHHHHHHHHHHH
Confidence            9999999999999999998765

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2.2e-19  Score=139.99  Aligned_cols=155  Identities=15%  Similarity=0.083  Sum_probs=95.5

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~  169 (269)
                      .+|+++|.+|+|||||+++|++........+..+.+........   ...+.+|||||....          ..+...++
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~----------~~~~~~~~   76 (170)
T d1r2qa_           7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY----------HSLAPMYY   76 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG----------GGGHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhh----------hhhHHHHh
Confidence            57999999999999999999976311222222222222222221   345889999997432          12223333


Q ss_pred             hcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEe
Q 024325          170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV  245 (269)
Q Consensus       170 ~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v  245 (269)
                      .   .++.+++++|......... ..+...+..   .+.|+++|.||+|+........  +........   ...+++++
T Consensus        77 ~---~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~--e~~~~~~~~---~~~~~~e~  148 (170)
T d1r2qa_          77 R---GAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDF--QEAQSYADD---NSLLFMET  148 (170)
T ss_dssp             T---TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCH--HHHHHHHHH---TTCEEEEC
T ss_pred             h---CcceEEEEeccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccccccccH--HHHHHHHHh---cCCEEEEe
Confidence            3   3899999999764322111 222233322   3578999999999865422211  111122221   24689999


Q ss_pred             eCCCCCCHHHHHHHHHHhhh
Q 024325          246 SSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       246 Sa~~g~gi~~L~~~i~~~~~  265 (269)
                      ||++|+||+++++.|.+.+.
T Consensus       149 SAk~g~~V~e~f~~l~~~i~  168 (170)
T d1r2qa_         149 SAKTSMNVNEIFMAIAKKLP  168 (170)
T ss_dssp             CTTTCTTHHHHHHHHHHTSC
T ss_pred             eCCCCCCHHHHHHHHHHHHh
Confidence            99999999999999987654

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.3e-18  Score=135.91  Aligned_cols=156  Identities=15%  Similarity=0.085  Sum_probs=94.9

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe---eEEE--eCCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~---~~~~--~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      ..+|+++|.+|+|||||+|++++.. ....+..+.+..+.   .+..  ....+.+||++|...   .       ..+. 
T Consensus         3 ~~Kv~lvG~~~vGKTsLi~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g---~-------e~~~-   70 (172)
T d2g3ya1           3 YYRVVLIGEQGVGKSTLANIFAGVH-DSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKG---E-------NEWL-   70 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCCC-CTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTH---H-------HHHH-
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCc-CCccccccceeeecceeeeccCCceeeeeeeccccccc---c-------cccc-
Confidence            3689999999999999999999863 22233333222222   1111  234578999987521   0       1111 


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHH-HHHHHHHHHHHhcCCCCC
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLVQ  240 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~  240 (269)
                       .......+|++++|+|.+....... ..+...+..    .+.|+++|.||+|+....+.. +..+.+....      +.
T Consensus        71 -~~~~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~------~~  143 (172)
T d2g3ya1          71 -HDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVF------DC  143 (172)
T ss_dssp             -HHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHH------TC
T ss_pred             -ccccccccceeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHc------CC
Confidence             1123456999999999874222111 123333332    368999999999986542211 1112222211      46


Q ss_pred             CeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325          241 PVMMVSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       241 ~vi~vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                      +++.+||++|.|++++++.|.+.+..
T Consensus       144 ~~~e~Sak~g~~i~~~f~~l~~~i~~  169 (172)
T d2g3ya1         144 KFIETSAAVQHNVKELFEGIVRQVRL  169 (172)
T ss_dssp             EEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             eEEEEeCCCCcCHHHHHHHHHHHHHH
Confidence            89999999999999999999887754

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1e-18  Score=138.05  Aligned_cols=150  Identities=16%  Similarity=0.139  Sum_probs=93.6

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCC-CCceeEeeE---EE------------eCCcEEEEcCCCCCCcchhHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK-PGLTQTINF---FK------------LGTKLCLVDLPGYGFAYAKEE  156 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~-~gtt~~~~~---~~------------~~~~~~lvDtpG~~~~~~~~~  156 (269)
                      .+|+++|.+|+|||||+++|++..   +...+ +..+.+...   ..            ....+.+|||||.        
T Consensus         6 ~Ki~ivG~~~vGKTsLi~~l~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~--------   74 (186)
T d2f7sa1           6 IKLLALGDSGVGKTTFLYRYTDNK---FNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ--------   74 (186)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHCSC---CCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESH--------
T ss_pred             EEEEEECCCCcCHHHHHHHHhcCC---CCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcc--------
Confidence            589999999999999999999762   11111 111111111   00            1235889999994        


Q ss_pred             HHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHh-------hCCcEEEEEecCCCCCchHHHHHHHHHH
Q 024325          157 VKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER-------SQTKYQVVLTKTDTVFPIDVARRAMQIE  229 (269)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~-------~~~p~iiv~NK~Dl~~~~~~~~~~~~~~  229 (269)
                        +.+..+...++.   .+|++++|+|.....  ....+..++..       ...|+++|.||+|+....+...  +...
T Consensus        75 --e~~~~~~~~~~~---~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~--~e~~  145 (186)
T d2f7sa1          75 --ERFRSLTTAFFR---DAMGFLLMFDLTSQQ--SFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNE--RQAR  145 (186)
T ss_dssp             --HHHHHHHHHHHT---TCCEEEEEEETTCHH--HHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCH--HHHH
T ss_pred             --hhhHHHHHHHHh---cCCEEEEEEeccccc--cceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchH--HHHH
Confidence              223344444444   399999999986421  11223333322       2468999999999965322211  1112


Q ss_pred             HHHHhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          230 ESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       230 ~~~~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      +.....   +.+++++||++|+|+++++++|.+.+.
T Consensus       146 ~~~~~~---~~~~~e~Sak~~~~i~e~f~~l~~~i~  178 (186)
T d2f7sa1         146 ELADKY---GIPYFETSAATGQNVEKAVETLLDLIM  178 (186)
T ss_dssp             HHHHHT---TCCEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred             HHHHHc---CCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            222222   468999999999999999999988654

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=9.6e-20  Score=142.51  Aligned_cols=153  Identities=16%  Similarity=0.161  Sum_probs=74.5

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeE--EEe---CCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~--~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      ..+|+++|.+|+|||||+++|++..  ...+..+..+.+...  ...   ...+.+|||||...          +..+..
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~----------~~~~~~   73 (173)
T d2fu5c1           6 LFKLLLIGDSGVGKTCVLFRFSEDA--FNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER----------FRTITT   73 (173)
T ss_dssp             EEEEEEECCCCC------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-------------------CC
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCC--CCCccCccccceEEEEEEEECCEEEEEEEEECCCchh----------hHHHHH
Confidence            3689999999999999999999762  112222222223221  111   34577899999622          122222


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHH---hhCCcEEEEEecCCCCCchHHHH-HHHHHHHHHHhcCCCCCC
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME---RSQTKYQVVLTKTDTVFPIDVAR-RAMQIEESLKANNSLVQP  241 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~---~~~~p~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~  241 (269)
                      .   ....+|++++|+|.+...+... ..+...+.   ....|+++|.||+|+........ ......   ..   ...+
T Consensus        74 ~---~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~---~~---~~~~  144 (173)
T d2fu5c1          74 A---YYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLA---LD---YGIK  144 (173)
T ss_dssp             T---TTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHH---HH---HTCE
T ss_pred             H---hccCCCEEEEEEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhhcccHHHHHHHHH---Hh---cCCE
Confidence            2   2345999999999875322211 12223333   23579999999999986432211 111111   11   1478


Q ss_pred             eEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          242 VMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       242 vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      ++.+||++|+|+++++++|.+.+.
T Consensus       145 ~~e~Sa~~g~gv~e~f~~l~~~i~  168 (173)
T d2fu5c1         145 FMETSAKANINVENAFFTLARDIK  168 (173)
T ss_dssp             EEECCC---CCHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999988764

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=4e-19  Score=138.88  Aligned_cols=151  Identities=15%  Similarity=0.115  Sum_probs=91.4

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe--eEEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~--~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      .+|+++|.+|+|||||++++++.. . .....++++...  ....   ....+.+||++|.....          .+...
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~----------~~~~~   71 (173)
T d2a5ja1           4 FKYIIIGDTGVGKSCLLLQFTDKR-F-QPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFR----------SITRS   71 (173)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSC-C-CC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTS----------CCCHH
T ss_pred             EEEEEECCCCcCHHHHHHHHhcCC-C-CCCcccceeeccceeeeeeeeeEEEEEeecccCccchh----------hHHHH
Confidence            589999999999999999998773 1 222222222222  1111   13468899999964321          11122


Q ss_pred             HHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchHH-HHHHHHHHHHHHhcCCCCCCe
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDV-ARRAMQIEESLKANNSLVQPV  242 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~v  242 (269)
                      +..   .+|++++|+|..+..+... ..++..+..   .++|+++|.||+|+...... ......+.+   ..   ..++
T Consensus        72 ~~~---~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~---~~---~~~~  142 (173)
T d2a5ja1          72 YYR---GAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAR---EH---GLIF  142 (173)
T ss_dssp             HHT---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH---HH---TCEE
T ss_pred             Hhh---ccCEEEEEEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhhhHHHHHHHHHH---Hc---CCEE
Confidence            222   3899999999874322211 233333332   36899999999997543211 111122221   11   4689


Q ss_pred             EEeeCCCCCCHHHHHHHHHHhh
Q 024325          243 MMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       243 i~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      +++||++|.|+++++..|.+.+
T Consensus       143 ~e~Sa~tg~~V~e~f~~i~~~i  164 (173)
T d2a5ja1         143 METSAKTACNVEEAFINTAKEI  164 (173)
T ss_dssp             EEECTTTCTTHHHHHHHHHHHH
T ss_pred             EEecCCCCCCHHHHHHHHHHHH
Confidence            9999999999999998887754

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=8.7e-19  Score=138.21  Aligned_cols=155  Identities=14%  Similarity=-0.009  Sum_probs=96.4

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEE--eCCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~--~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      .++|+++|.+|+|||||++++++..   +...+.+|..+..   ...  ....+.+||++|....          ..+..
T Consensus         5 ~iKivviG~~~vGKTsli~~~~~~~---f~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~----------~~~~~   71 (183)
T d1mh1a_           5 AIKCVVVGDGAVGKTCLLISYTTNA---FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY----------DRLRP   71 (183)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSS---CCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGG----------TTTGG
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCC---CCcccccceeeceeeeeeccCcceEEEeecccccccc----------hhhhh
Confidence            4689999999999999999999872   3344444443332   111  1345789999996331          11112


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcch--HHHHHHHHh--hCCcEEEEEecCCCCCchHHHHHHH----------HHHHHH
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFPIDVARRAM----------QIEESL  232 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~--~~~~~~l~~--~~~p~iiv~NK~Dl~~~~~~~~~~~----------~~~~~~  232 (269)
                      .+   ...+|++++|+|.....+...  ..+...+..  .+.|+++|.||+|+...........          ......
T Consensus        72 ~~---~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a  148 (183)
T d1mh1a_          72 LS---YPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA  148 (183)
T ss_dssp             GG---CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred             hc---ccccceeeeeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHH
Confidence            22   334899999999874322211  123333333  3579999999999876533221110          111111


Q ss_pred             HhcCCCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325          233 KANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       233 ~~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      ...  ...++++|||++|.||+++|+.|.+.+
T Consensus       149 ~~~--~~~~~~E~SAk~~~~V~e~F~~l~~~i  178 (183)
T d1mh1a_         149 KEI--GAVKYLECSALTQRGLKTVFDEAIRAV  178 (183)
T ss_dssp             HHT--TCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHc--CCceEEEcCCCCCcCHHHHHHHHHHHH
Confidence            111  236789999999999999999887654

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.77  E-value=8e-19  Score=135.55  Aligned_cols=157  Identities=17%  Similarity=0.133  Sum_probs=99.9

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR  172 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~  172 (269)
                      .+|+++|.+|||||||+|++++. ....+.+..+.+ .......+..+.++|++|.....             .......
T Consensus         6 ~kI~ivG~~~vGKSSLi~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~   70 (169)
T d1upta_           6 MRILILGLDGAGKTTILYRLQVG-EVVTTIPTIGFN-VETVTYKNLKFQVWDLGGLTSIR-------------PYWRCYY   70 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS-SCCCCCCCSSEE-EEEEEETTEEEEEEEECCCGGGG-------------GGGGGGC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC-CCcceeccccee-eeeeccCceEEEEeecccccccc-------------ccchhhh
Confidence            58999999999999999999987 333222222211 12233346778899999874321             1112233


Q ss_pred             cccceEEEEEeCCCCCCcchH-H-HHHHH---HhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeC
Q 024325          173 VSLKRVCLLIDTKWGVKPRDH-E-LISLM---ERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS  247 (269)
Q Consensus       173 ~~~d~vl~vid~~~~~~~~~~-~-~~~~l---~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa  247 (269)
                      ..++.+++++|.......... . +...+   .....|+++|.||+|+.......+....+...  .......+++++||
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~--~~~~~~~~~~~~SA  148 (169)
T d1upta_          71 SNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLP--ALKDRKWQIFKTSA  148 (169)
T ss_dssp             TTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGG--GCTTSCEEEEECCT
T ss_pred             hhhhhhhhhhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHH--HHhcCCCEEEEEeC
Confidence            448889999987643332221 1 12222   12357899999999998765443333322111  12223568999999


Q ss_pred             CCCCCHHHHHHHHHHhhhh
Q 024325          248 KSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       248 ~~g~gi~~L~~~i~~~~~~  266 (269)
                      ++|+|+++++++|.+.++.
T Consensus       149 ~~g~gv~e~~~~l~~~l~~  167 (169)
T d1upta_         149 TKGTGLDEAMEWLVETLKS  167 (169)
T ss_dssp             TTCTTHHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHh
Confidence            9999999999999887754

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.76  E-value=3e-19  Score=139.12  Aligned_cols=153  Identities=14%  Similarity=0.093  Sum_probs=93.2

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~  169 (269)
                      .+|+++|.+|+|||||++++++........+.++.........   ....+.+|||+|....          ..+...++
T Consensus         4 iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~----------~~~~~~~~   73 (170)
T d1ek0a_           4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERF----------ASLAPMYY   73 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG----------GGGHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhH----------HHHHHHHH
Confidence            5899999999999999999998731222222222211221122   2356899999997432          11222333


Q ss_pred             hcccccceEEEEEeCCCCCCcch-HHHHHHHHh---hCCcEEEEEecCCCCCchH---H-HHHHHHHHHHHHhcCCCCCC
Q 024325          170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPID---V-ARRAMQIEESLKANNSLVQP  241 (269)
Q Consensus       170 ~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~---~~~p~iiv~NK~Dl~~~~~---~-~~~~~~~~~~~~~~~~~~~~  241 (269)
                      .   .+|++++|+|..+...... ..+......   ...|+++|.||+|+.+...   . ....+.+.+   ..   +.+
T Consensus        74 ~---~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~---~~---~~~  144 (170)
T d1ek0a_          74 R---NAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAE---EK---GLL  144 (170)
T ss_dssp             T---TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHH---HH---TCE
T ss_pred             h---ccceEEEEEeCCcccchhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHHH---Hc---CCE
Confidence            3   3999999999875322221 122222221   3578999999999864211   1 111111211   11   468


Q ss_pred             eEEeeCCCCCCHHHHHHHHHHhh
Q 024325          242 VMMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       242 vi~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      ++++||++|.|++++|..|.+.+
T Consensus       145 ~~e~Sak~g~gV~e~F~~i~~~i  167 (170)
T d1ek0a_         145 FFETSAKTGENVNDVFLGIGEKI  167 (170)
T ss_dssp             EEECCTTTCTTHHHHHHHHHTTS
T ss_pred             EEEecCCCCcCHHHHHHHHHHHh
Confidence            99999999999999999997764

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=2.4e-18  Score=136.64  Aligned_cols=154  Identities=13%  Similarity=0.015  Sum_probs=95.7

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee--EEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~--~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      ++|+++|.+|+|||||++++++..   +...+.+|..+..  ...   ....+.+|||+|....          ..+...
T Consensus         4 iKvvllG~~~vGKTSli~r~~~~~---f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~----------~~~~~~   70 (191)
T d2ngra_           4 IKCVVVGDGAVGKTCLLISYTTNK---FPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY----------DRLRPL   70 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSC---CCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG----------TTTGGG
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCC---CCCCcCCceeeecceeEeeCCceeeeeccccccchhh----------hhhhhh
Confidence            589999999999999999999872   3344433443321  111   1346889999997431          111122


Q ss_pred             HHhcccccceEEEEEeCCCCCCcch--HHHHHHHHh--hCCcEEEEEecCCCCCchHHHHHH----------HHHHHHHH
Q 024325          168 YVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFPIDVARRA----------MQIEESLK  233 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~~~~~~~--~~~~~~l~~--~~~p~iiv~NK~Dl~~~~~~~~~~----------~~~~~~~~  233 (269)
                      +   ...+|++++|+|..+..+...  ..+...+..  .+.|+++|.||+|+.+........          ....+...
T Consensus        71 ~---~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~  147 (191)
T d2ngra_          71 S---YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLAR  147 (191)
T ss_dssp             G---CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHH
T ss_pred             c---ccccceeecccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHH
Confidence            2   234999999999875322211  123333333  368999999999997543221110          11111111


Q ss_pred             hcCCCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325          234 ANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       234 ~~~~~~~~vi~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      ..  ...+++++||++|.|++++++.+...+
T Consensus       148 ~~--~~~~~~e~SAk~~~~V~e~f~~l~~~~  176 (191)
T d2ngra_         148 DL--KAVKYVECSALTQKGLKNVFDEAILAA  176 (191)
T ss_dssp             HT--TCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             Hc--CCCeEEEEeCCCCcCHHHHHHHHHHHH
Confidence            21  246799999999999999998887654

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.2e-17  Score=130.80  Aligned_cols=150  Identities=8%  Similarity=-0.016  Sum_probs=92.4

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe-e--EEEe--CCcEEEEcCCCCCCcchhHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-N--FFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVK  166 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~-~--~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~  166 (269)
                      ..+|+++|.+|+|||||++++++. ...   ....++.+. .  ....  ...+.+|||+|....               
T Consensus         5 ~~ki~vlG~~~vGKTsLi~~~~~~-~f~---~~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~---------------   65 (175)
T d2bmja1           5 ELRLGVLGDARSGKSSLIHRFLTG-SYQ---VLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDA---------------   65 (175)
T ss_dssp             EEEEEEECCTTTTHHHHHHHHHHS-CCC---CCCCSSCEEEEEEEEETTEEEEEEEEECSSCCCH---------------
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhC-CCC---CcCCccceeEEEEeecCceEEEEEEeeccccccc---------------
Confidence            368999999999999999999987 322   222222222 1  1112  345889999996431               


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcch-HHHHHHHHh------hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCC
Q 024325          167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLV  239 (269)
Q Consensus       167 ~~~~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~------~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  239 (269)
                      .|++.   +|++++|+|.++..+... ..+..++..      ...|+++|.||.|+.......-.....+.....  ...
T Consensus        66 ~~~~~---ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~--~~~  140 (175)
T d2bmja1          66 KFSGW---ADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCAD--MKR  140 (175)
T ss_dssp             HHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHT--STT
T ss_pred             ccccc---cceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHH--hCC
Confidence            12222   899999999875322222 233344322      346899999999875432110001111221122  124


Q ss_pred             CCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          240 QPVMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       240 ~~vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      .++++|||++|.|++++|..|.+.+.
T Consensus       141 ~~~~e~SAk~~~~v~~~F~~l~~~i~  166 (175)
T d2bmja1         141 CSYYETCATYGLNVDRVFQEVAQKVV  166 (175)
T ss_dssp             EEEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred             CeEEEeCCCCCcCHHHHHHHHHHHHH
Confidence            67899999999999999998877653

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=6.6e-18  Score=130.61  Aligned_cols=151  Identities=19%  Similarity=0.142  Sum_probs=90.9

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE---EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV  169 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~---~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~  169 (269)
                      .+|+++|.+|+|||||++++++........+..+.+......   .....+.++|++|....         .......|+
T Consensus         3 ~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~   73 (165)
T d1z06a1           3 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERF---------RKSMVQHYY   73 (165)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHH---------HTTTHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhh---------ccccceeee
Confidence            589999999999999999999762111122222222222222   22456889999996221         011122333


Q ss_pred             hcccccceEEEEEeCCCCCCcch-HHHHHHHHh----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEE
Q 024325          170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM  244 (269)
Q Consensus       170 ~~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~  244 (269)
                      .   .+|++++|+|..+..+... ..++..+..    .+.|+++|.||+|+....+...  +...+....   .+.++++
T Consensus        74 ~---~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~--~~~~~~~~~---~~~~~~e  145 (165)
T d1z06a1          74 R---NVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPT--DLAQKFADT---HSMPLFE  145 (165)
T ss_dssp             T---TCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCH--HHHHHHHHH---TTCCEEE
T ss_pred             c---CCCceEEEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhH--HHHHHHHHH---CCCEEEE
Confidence            3   3999999999875322222 233333333    3579999999999875422111  111222222   2468999


Q ss_pred             eeCCC---CCCHHHHHHHH
Q 024325          245 VSSKS---GAGIRSLRTVL  260 (269)
Q Consensus       245 vSa~~---g~gi~~L~~~i  260 (269)
                      +||++   +.||+++|.+|
T Consensus       146 ~SAkt~~~~~~V~e~F~~l  164 (165)
T d1z06a1         146 TSAKNPNDNDHVEAIFMTL  164 (165)
T ss_dssp             CCSSSGGGGSCHHHHHHHH
T ss_pred             EecccCCcCcCHHHHHHHh
Confidence            99997   45999999876

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.74  E-value=7.4e-18  Score=140.29  Aligned_cols=112  Identities=20%  Similarity=0.245  Sum_probs=80.5

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcC-cc---cc------CC------CCCceeE---eeEEEeCCcEEEEcCCCCCCcch
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWG-VV---RT------SD------KPGLTQT---INFFKLGTKLCLVDLPGYGFAYA  153 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~-~~---~~------s~------~~gtt~~---~~~~~~~~~~~lvDtpG~~~~~~  153 (269)
                      .+|+++|+.++|||||+.+|+-... +.   .+      ++      ..|.|-.   ..+.+.+..++++||||+.+-..
T Consensus         7 Rni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~~   86 (276)
T d2bv3a2           7 RNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFTI   86 (276)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCST
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhhHH
Confidence            4799999999999999999874211 00   01      11      0111111   23344578899999999865321


Q ss_pred             hHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCC
Q 024325          154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF  217 (269)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~  217 (269)
                                   .....+..+|.+++|+|+..+...+...+++.+...++|.++++||+|...
T Consensus        87 -------------e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~a~~~~lP~i~fINKmDr~~  137 (276)
T d2bv3a2          87 -------------EVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTG  137 (276)
T ss_dssp             -------------THHHHHHHCCEEEEEEETTTSSCHHHHHHHHHHHTTTCCEEEEEECTTSTT
T ss_pred             -------------HHHHHHHhhhheEEeccccCCcchhHHHHHHHHHHcCCCEEEEEecccccc
Confidence                         112222239999999999999999999999999999999999999999964

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.74  E-value=6.2e-18  Score=132.47  Aligned_cols=158  Identities=16%  Similarity=0.088  Sum_probs=92.6

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhc
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST  171 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~  171 (269)
                      ..+|+++|.+|||||||+|+|++. ......+..+.+.... ...+..+.++|++|......             .....
T Consensus        13 ~~kI~lvG~~~vGKTsLl~~l~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-------------~~~~~   77 (186)
T d1f6ba_          13 TGKLVFLGLDNAGKTTLLHMLKDD-RLGQHVPTLHPTSEEL-TIAGMTFTTFDLGGHIQARR-------------VWKNY   77 (186)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCEEE-EETTEEEEEEEECC----CC-------------GGGGG
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC-CCcceecccccceeEE-Eecccccccccccchhhhhh-------------HHhhh
Confidence            468999999999999999999988 3333333333333222 22356688899988643211             11122


Q ss_pred             ccccceEEEEEeCCCCCCcch-HHHHHHHH----hhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHh----------cC
Q 024325          172 RVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA----------NN  236 (269)
Q Consensus       172 ~~~~d~vl~vid~~~~~~~~~-~~~~~~l~----~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~----------~~  236 (269)
                      ....+.+++++|......... ...+....    ..+.|++++.||.|+..........+.+......          ..
T Consensus        78 ~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  157 (186)
T d1f6ba_          78 LPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELN  157 (186)
T ss_dssp             GGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCC
T ss_pred             hcccceeeeeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCCHHHHHHHHhhcccchhhhhhhHHHhh
Confidence            334889999999764222211 11111111    1368999999999997654433332222110000          01


Q ss_pred             CCCCCeEEeeCCCCCCHHHHHHHHHHhh
Q 024325          237 SLVQPVMMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       237 ~~~~~vi~vSa~~g~gi~~L~~~i~~~~  264 (269)
                      ....++++|||++|+||+++++||.+.+
T Consensus       158 ~~~~~~~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         158 ARPLEVFMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             SCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             cCCCEEEEEeCCCCCCHHHHHHHHHHhh
Confidence            1134689999999999999999998764

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.73  E-value=2.5e-17  Score=136.65  Aligned_cols=111  Identities=25%  Similarity=0.325  Sum_probs=81.3

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCc----ccc------CC------CCCceeE---eeEEEeCCcEEEEcCCCCCCcch
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGV----VRT------SD------KPGLTQT---INFFKLGTKLCLVDLPGYGFAYA  153 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~----~~~------s~------~~gtt~~---~~~~~~~~~~~lvDtpG~~~~~~  153 (269)
                      .+|+++|+.++|||||+.+|+.....    ..+      .+      ..+.|-.   ..+.+.+..++++||||+.+   
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~d---   79 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD---   79 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG---
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhh---
Confidence            37999999999999999998643110    000      01      1112222   22334577899999999843   


Q ss_pred             hHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCC
Q 024325          154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  216 (269)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~  216 (269)
                                +.......+..+|.+++|+|+..+...+...+++.+...++|.++++||+|..
T Consensus        80 ----------F~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~~~~~~~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          80 ----------FVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG  132 (267)
T ss_dssp             ----------GHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred             ----------hhhhhhhhhcccCceEEEeeccCCccchhHHHHHhhhhccccccccccccccc
Confidence                      23333344444999999999999999999999999999999999999999975

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.73  E-value=1.6e-18  Score=142.79  Aligned_cols=155  Identities=19%  Similarity=0.210  Sum_probs=93.7

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCcc-----------------------------ccCCCCCceeEe---eEEEeCCc
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVV-----------------------------RTSDKPGLTQTI---NFFKLGTK  139 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~-----------------------------~~s~~~gtt~~~---~~~~~~~~  139 (269)
                      .++|+++|+.++|||||+.+|+......                             ......|.|.+.   .+.+.+..
T Consensus        24 ~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~  103 (245)
T d1r5ba3          24 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRR  103 (245)
T ss_dssp             EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEE
T ss_pred             ceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccccccccce
Confidence            3579999999999999999985321000                             011112233222   22334567


Q ss_pred             EEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCC-------CcchHHHHHHHHhhCCc-EEEEEe
Q 024325          140 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-------KPRDHELISLMERSQTK-YQVVLT  211 (269)
Q Consensus       140 ~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~-------~~~~~~~~~~l~~~~~p-~iiv~N  211 (269)
                      +.++||||+             ..+.....++...+|.+++|+|+..+.       ..+..+.+..+...++| +++++|
T Consensus       104 i~~iDtPGH-------------~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~~i~~iiv~iN  170 (245)
T d1r5ba3         104 FSLLDAPGH-------------KGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVIN  170 (245)
T ss_dssp             EEECCCCC------------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEE
T ss_pred             eeeeccccc-------------ccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHcCCCeEEEEEE
Confidence            999999997             345666677777899999999998764       33667788878888876 779999


Q ss_pred             cCCCCCch----HHHHHHHHHHHHHHhcCC----CCCCeEEeeCCCCCCHHHHHHH
Q 024325          212 KTDTVFPI----DVARRAMQIEESLKANNS----LVQPVMMVSSKSGAGIRSLRTV  259 (269)
Q Consensus       212 K~Dl~~~~----~~~~~~~~~~~~~~~~~~----~~~~vi~vSa~~g~gi~~L~~~  259 (269)
                      |+|+....    ...+....+...+.....    ...|++|+||++|+||.++++.
T Consensus       171 KmD~~~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~s  226 (245)
T d1r5ba3         171 KMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDS  226 (245)
T ss_dssp             CTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCT
T ss_pred             cCCCCccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchhc
Confidence            99997532    123333444433333211    1357999999999999887543

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=1.2e-16  Score=128.03  Aligned_cols=157  Identities=22%  Similarity=0.284  Sum_probs=90.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE--eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhc
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST  171 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~--~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~  171 (269)
                      .|+++|++|||||||+|+|++. ......+..+++.......  .+..+.+|||||...      .+   ......+.  
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~------~~---~~~~~~~~--   69 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTG-QYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHES------LR---FQLLDRFK--   69 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS-CCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHH------HH---HHHHHHHG--
T ss_pred             EEEEECCCCCCHHHHHHHHHcC-CCCcccCCeeEEEEEEEEeeeeeeeeeeeecccccc------cc---chhhhhhh--
Confidence            6999999999999999999987 3333333333333322221  255689999999621      10   12223333  


Q ss_pred             ccccceEEEEEeCCCCCCc---chHHHHHHHHh-----hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhc--------
Q 024325          172 RVSLKRVCLLIDTKWGVKP---RDHELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN--------  235 (269)
Q Consensus       172 ~~~~d~vl~vid~~~~~~~---~~~~~~~~l~~-----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~--------  235 (269)
                       ..++.+++|+|++.....   ....+.+.+..     ..+|+++|+||+|+..+.......+.+...+...        
T Consensus        70 -~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~~~~~i~~~l~~e~~~~~~~~~~~~  148 (207)
T d2fh5b1          70 -SSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAP  148 (207)
T ss_dssp             -GGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---
T ss_pred             -hhccccceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCCCHHHHHHHHHHHhhhhhhcccccc
Confidence             338999999998742211   11222233322     3579999999999986544444333332211100        


Q ss_pred             -------------C-----------CCCCCeEEeeCCCCCC------HHHHHHHHHHh
Q 024325          236 -------------N-----------SLVQPVMMVSSKSGAG------IRSLRTVLSKI  263 (269)
Q Consensus       236 -------------~-----------~~~~~vi~vSa~~g~g------i~~L~~~i~~~  263 (269)
                                   .           .....++.+|+++|.|      ++.+.+||.+.
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~S~~~~~~~~~~~~i~~~~~wl~~~  206 (207)
T d2fh5b1         149 STLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  206 (207)
T ss_dssp             ---------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             ceeehhhhhhhhhcccchhhhHHhccCCcEEEEeeecCCCcccccccHHHHHHHHHHh
Confidence                         0           0012478899999987      88888888654

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=3.8e-17  Score=130.81  Aligned_cols=113  Identities=22%  Similarity=0.271  Sum_probs=75.0

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE---eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      -|+|+++|+||||||||+|+|++. ..     .++||++.....   .+..+.++||||.....         ......+
T Consensus         3 ~p~V~lvG~~n~GKTSLln~l~~~-~~-----~~~tt~~~~~~~~~~~~~~~~l~D~~g~~~~~---------~~~~~~~   67 (209)
T d1nrjb_           3 QPSIIIAGPQNSGKTSLLTLLTTD-SV-----RPTVVSQEPLSAADYDGSGVTLVDFPGHVKLR---------YKLSDYL   67 (209)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHS-SC-----CCBCCCSSCEEETTGGGSSCEEEECCCCGGGT---------HHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC-CC-----CCeEEecceEEEEEeCCeEEEEEecccccchh---------hHHHHHH
Confidence            479999999999999999999987 32     245665544332   36779999999975421         1122233


Q ss_pred             HhcccccceEEEEEeCCCCCCcch--HHH----H---HHHHhhCCcEEEEEecCCCCCch
Q 024325          169 VSTRVSLKRVCLLIDTKWGVKPRD--HEL----I---SLMERSQTKYQVVLTKTDTVFPI  219 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~~~~~~~--~~~----~---~~l~~~~~p~iiv~NK~Dl~~~~  219 (269)
                      ......++.+++++|+........  .+.    +   ......++|+++|+||+|+....
T Consensus        68 ~~~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~  127 (209)
T d1nrjb_          68 KTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR  127 (209)
T ss_dssp             HHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             HHHhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccC
Confidence            334445788999999875433222  111    1   12223478999999999998653

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=2.3e-17  Score=135.17  Aligned_cols=150  Identities=18%  Similarity=0.234  Sum_probs=105.6

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCc-----------------------c------ccCCCCCceeEe---eEEEeCCcE
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGV-----------------------V------RTSDKPGLTQTI---NFFKLGTKL  140 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~-----------------------~------~~s~~~gtt~~~---~~~~~~~~~  140 (269)
                      .+|+++|+.++|||||+.+|+-....                       +      ......|.|-+.   .+.+.+.++
T Consensus         7 iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i   86 (239)
T d1f60a3           7 INVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQV   86 (239)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEEE
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCCEEE
Confidence            58999999999999999998521000                       0      001123445443   344457889


Q ss_pred             EEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCC-------CCcchHHHHHHHHhhCCc-EEEEEec
Q 024325          141 CLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------VKPRDHELISLMERSQTK-YQVVLTK  212 (269)
Q Consensus       141 ~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~-------~~~~~~~~~~~l~~~~~p-~iiv~NK  212 (269)
                      .++||||+             .++.....+....+|.+++|+|+..+       ...+..+.+..+...++| +|+++||
T Consensus        87 ~iiDtPGH-------------~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~gv~~iiv~iNK  153 (239)
T d1f60a3          87 TVIDAPGH-------------RDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNK  153 (239)
T ss_dssp             EEEECCCC-------------TTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEEC
T ss_pred             EEEECCCc-------------HHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHcCCCeEEEEEEC
Confidence            99999998             35667777888889999999999865       345677777888888886 7889999


Q ss_pred             CCCCCchH--HHHHHHHHHHHHHhcC--CCCCCeEEeeCCCCCCHHH
Q 024325          213 TDTVFPID--VARRAMQIEESLKANN--SLVQPVMMVSSKSGAGIRS  255 (269)
Q Consensus       213 ~Dl~~~~~--~~~~~~~~~~~~~~~~--~~~~~vi~vSa~~g~gi~~  255 (269)
                      +|+.+...  .......+...+....  ....+++++|+.+|.|+-+
T Consensus       154 mD~~~~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         154 MDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             GGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            99986432  3344455555554432  2246789999999998743

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=1.7e-17  Score=130.33  Aligned_cols=153  Identities=14%  Similarity=0.090  Sum_probs=92.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE--Ee---CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHH
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF--KL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY  168 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~--~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~  168 (269)
                      +|+++|.+|+|||||+++++...   +...+.+|..+....  ..   ...+.+|||+|.....          .+... 
T Consensus         4 KivliG~~~vGKTsli~r~~~~~---f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----------~~~~~-   69 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAKDC---FPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYD----------NVRPL-   69 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC---CCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGT----------TTGGG-
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC---CCCccCCceeecccccccccceEEeecccccccccccc----------ccccc-
Confidence            78999999999999999999872   233333343332211  11   3457899999963311          11111 


Q ss_pred             HhcccccceEEEEEeCCCCCCcch--HHHHHHHHh--hCCcEEEEEecCCCCCchHHHHH----------HHHHHHHHHh
Q 024325          169 VSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFPIDVARR----------AMQIEESLKA  234 (269)
Q Consensus       169 ~~~~~~~d~vl~vid~~~~~~~~~--~~~~~~l~~--~~~p~iiv~NK~Dl~~~~~~~~~----------~~~~~~~~~~  234 (269)
                        ....+|++++|+|..+..+...  ..+...+..  .+.|+++|.||+|+.........          ..........
T Consensus        70 --~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~  147 (179)
T d1m7ba_          70 --SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQ  147 (179)
T ss_dssp             --GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHH
T ss_pred             --hhhhhhhhheeeecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHH
Confidence              2334999999999875322111  122232322  36899999999998653211100          0011111111


Q ss_pred             cCCCCCCeEEeeCCCCC-CHHHHHHHHHHhh
Q 024325          235 NNSLVQPVMMVSSKSGA-GIRSLRTVLSKIA  264 (269)
Q Consensus       235 ~~~~~~~vi~vSa~~g~-gi~~L~~~i~~~~  264 (269)
                      .  ...+++++||++|. |++++|+.+...+
T Consensus       148 ~--~~~~y~E~SAk~~~n~i~~~F~~~~~~~  176 (179)
T d1m7ba_         148 I--GAATYIECSALQSENSVRDIFHVATLAC  176 (179)
T ss_dssp             H--TCSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred             h--CCCeEEEEeCCCCCcCHHHHHHHHHHHH
Confidence            1  13578999999998 5999999887765

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.70  E-value=4.5e-17  Score=135.14  Aligned_cols=124  Identities=20%  Similarity=0.188  Sum_probs=89.1

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEE---EeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHH
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE  167 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~---~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~  167 (269)
                      ..++|+++|.||+|||||+|+|+|. ..+.+++.+++|++....   ..+..+.++||||+.++......   .......
T Consensus        31 ~~l~I~LvG~tg~GKSSliN~ilg~-~~~~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~~---~~~~i~~  106 (257)
T d1h65a_          31 NSLTILVMGKGGVGKSSTVNSIIGE-RVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDM---ALNIIKS  106 (257)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTS-CCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHH---HHHHHHH
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhCC-CceeecCCCCcceeEEEEEEEeccEEEEEEeeecccCCcchHHH---HHHHHHH
Confidence            3468999999999999999999998 678888889999887543   33678999999999765332211   1111122


Q ss_pred             HHhcccccceEEEEEeCCC-CCCcchHHHHHHHHhh-----CCcEEEEEecCCCCCch
Q 024325          168 YVSTRVSLKRVCLLIDTKW-GVKPRDHELISLMERS-----QTKYQVVLTKTDTVFPI  219 (269)
Q Consensus       168 ~~~~~~~~d~vl~vid~~~-~~~~~~~~~~~~l~~~-----~~p~iiv~NK~Dl~~~~  219 (269)
                      +. .....+++++|++... .++..+...++.+...     ..++++|+||+|...+.
T Consensus       107 ~~-~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~  163 (257)
T d1h65a_         107 FL-LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD  163 (257)
T ss_dssp             HT-TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred             HH-hcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCCcC
Confidence            22 2334788888888754 4667777777666542     35799999999998753

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.70  E-value=1.7e-16  Score=129.77  Aligned_cols=162  Identities=17%  Similarity=0.217  Sum_probs=97.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC----cCccccCCCCCceeEe-------eE-----------------------------
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ----WGVVRTSDKPGLTQTI-------NF-----------------------------  133 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~----~~~~~~s~~~gtt~~~-------~~-----------------------------  133 (269)
                      .|+++|++|||||||+++|+..    ...+.+...|+++...       ..                             
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~~~~~~~~ivn~d~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRLMEKF   81 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHHHTTH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhCCeEEEEecCcccccCCCcccchHHHHHHHHHHhHhhhccCCchhhhhHhHHhhH
Confidence            5899999999999999999732    1333343333332210       00                             


Q ss_pred             ---------EEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHH-----HH
Q 024325          134 ---------FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS-----LM  199 (269)
Q Consensus       134 ---------~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~-----~l  199 (269)
                               ......+.++||||......       +......... ....+.+++++|+.....++......     ..
T Consensus        82 ~~~~~~~~~~~~~~~~~~id~~g~~~~~~-------~~~~~~~~~~-~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~  153 (244)
T d1yrba1          82 NEYLNKILRLEKENDYVLIDTPGQMETFL-------FHEFGVRLME-NLPYPLVVYISDPEILKKPNDYCFVRFFALLID  153 (244)
T ss_dssp             HHHHHHHHHHHHHCSEEEEECCSSHHHHH-------HSHHHHHHHH-TSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhccccceeeeccccchhHHH-------HHHHHHHHHh-hccCceEEEEeccccccCchhHhhHHHHHHHHH
Confidence                     00023489999999843211       0111111222 22367899999988766655432211     12


Q ss_pred             HhhCCcEEEEEecCCCCCchHHHHHHHHH------H------------------HHHHhcCCCCCCeEEeeCCCCCCHHH
Q 024325          200 ERSQTKYQVVLTKTDTVFPIDVARRAMQI------E------------------ESLKANNSLVQPVMMVSSKSGAGIRS  255 (269)
Q Consensus       200 ~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~------~------------------~~~~~~~~~~~~vi~vSa~~g~gi~~  255 (269)
                      .+...|.++|+||+|+.+..+........      .                  ..... .....|++++||++|+|+++
T Consensus       154 ~~~~~~~ivvinK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~vSa~~geGi~~  232 (244)
T d1yrba1         154 LRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTE-VLPPVRVLYLSAKTREGFED  232 (244)
T ss_dssp             HHHTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHH-HSCCCCCEECCTTTCTTHHH
T ss_pred             HHhCCCceeeeeccccccHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh-hCCCCcEEEEECCCCCCHHH
Confidence            34578999999999999875543322111      0                  00111 12357899999999999999


Q ss_pred             HHHHHHHhh
Q 024325          256 LRTVLSKIA  264 (269)
Q Consensus       256 L~~~i~~~~  264 (269)
                      |+++|.+.+
T Consensus       233 L~~~l~e~~  241 (244)
T d1yrba1         233 LETLAYEHY  241 (244)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998753

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.69  E-value=6.6e-17  Score=131.45  Aligned_cols=151  Identities=19%  Similarity=0.266  Sum_probs=96.8

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCc-----------------------------cccCCCCCceeEee---EEEeCCc
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGV-----------------------------VRTSDKPGLTQTIN---FFKLGTK  139 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~-----------------------------~~~s~~~gtt~~~~---~~~~~~~  139 (269)
                      ..+|+++|+.++|||||+.+|+.....                             .......|.|.+..   +...+..
T Consensus         3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~   82 (224)
T d1jnya3           3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYF   82 (224)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCE
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCce
Confidence            358999999999999999988631100                             00112233443332   2234678


Q ss_pred             EEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCC-------CcchHHHHHHHHhhCC-cEEEEEe
Q 024325          140 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-------KPRDHELISLMERSQT-KYQVVLT  211 (269)
Q Consensus       140 ~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~-------~~~~~~~~~~l~~~~~-p~iiv~N  211 (269)
                      +.++||||+             .++.......+..+|.+++|+|+..+.       ..+..+.+..+...++ ++|+++|
T Consensus        83 i~iiDtPGH-------------~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~~~~~iIv~iN  149 (224)
T d1jnya3          83 FTIIDAPGH-------------RDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVN  149 (224)
T ss_dssp             EEECCCSSS-------------TTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEE
T ss_pred             eEEeeCCCc-------------HHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHhCCCceEEEEE
Confidence            999999998             345667777888899999999999874       3444555555665665 5888999


Q ss_pred             cCCCCCchH----HHHHHHHHHHHHHhcC--CCCCCeEEeeCCCCCCHHH
Q 024325          212 KTDTVFPID----VARRAMQIEESLKANN--SLVQPVMMVSSKSGAGIRS  255 (269)
Q Consensus       212 K~Dl~~~~~----~~~~~~~~~~~~~~~~--~~~~~vi~vSa~~g~gi~~  255 (269)
                      |+|+..+..    .......+...+..+.  ....+++++||..|.|+.+
T Consensus       150 K~D~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         150 KMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             CGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             cccCCCccccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence            999985322    2233334444443332  2345789999999999854

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=1.5e-15  Score=129.63  Aligned_cols=155  Identities=19%  Similarity=0.182  Sum_probs=95.1

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcC-----cCccccCCCCCceeE-----------------e-eEEE------------
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQ-----WGVVRTSDKPGLTQT-----------------I-NFFK------------  135 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~-----~~~~~~s~~~gtt~~-----------------~-~~~~------------  135 (269)
                      ..++|+|+|+||||||||+++|...     ..++.+...|.++.+                 . .+..            
T Consensus        53 ~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~lgg~~  132 (327)
T d2p67a1          53 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGAS  132 (327)
T ss_dssp             CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CHH
T ss_pred             CceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeeccccccchhHHHHhcccccccccccccccccccch
Confidence            3579999999999999999999742     133333222322211                 0 0100            


Q ss_pred             ------------eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCc--chHHHHHHHHh
Q 024325          136 ------------LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKP--RDHELISLMER  201 (269)
Q Consensus       136 ------------~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~--~~~~~~~~l~~  201 (269)
                                  .|..+.++.|.|.+...         ..    +   ...+|.+++|+++..+...  ...-+++    
T Consensus       133 ~~~~~~~~~~~~~g~d~iliEtvG~gq~e---------~~----i---~~~aD~~l~v~~P~~Gd~iq~~k~gi~e----  192 (327)
T d2p67a1         133 QRARELMLLCEAAGYDVVIVETVGVGQSE---------TE----V---ARMVDCFISLQIAGGGDDLQGIKKGLME----  192 (327)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEEEECCTTHH---------HH----H---HTTCSEEEEEECC------CCCCHHHHH----
T ss_pred             hhhhHHHHHHHhcCCCeEEEeeccccccc---------hh----h---hhccceEEEEecCCCchhhhhhchhhhc----
Confidence                        03447778887765420         01    1   1128999999887644222  2233332    


Q ss_pred             hCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhc----CCCCCCeEEeeCCCCCCHHHHHHHHHHhhhhh
Q 024325          202 SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN----NSLVQPVMMVSSKSGAGIRSLRTVLSKIARFA  267 (269)
Q Consensus       202 ~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~----~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~~~  267 (269)
                        .+-++|+||+|+............+...+...    ..+.+||+.+||++|+|+++|++.|.+...+.
T Consensus       193 --~aDi~VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~~~l  260 (327)
T d2p67a1         193 --VADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTAL  260 (327)
T ss_dssp             --HCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHHH
T ss_pred             --cccEEEEEeecccchHHHHHHHHHHHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHHHHH
Confidence              35689999999988766655555555544432    23456899999999999999999998876553

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.55  E-value=5.2e-15  Score=126.24  Aligned_cols=84  Identities=23%  Similarity=0.217  Sum_probs=46.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE---------------------------eCCcEEEEcCC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---------------------------LGTKLCLVDLP  146 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~---------------------------~~~~~~lvDtp  146 (269)
                      .|+++|.||||||||+|+|++..  ..++++|+||.+.+...                           .+..+.++|+|
T Consensus         2 ~v~lvG~pn~GKStlfn~lt~~~--~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~p   79 (319)
T d1wxqa1           2 EIGVVGKPNVGKSTFFSAATLVD--VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA   79 (319)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred             cEeEECCCCCCHHHHHHHHHCCC--CchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECC
Confidence            69999999999999999999984  68999999998753211                           11348999999


Q ss_pred             CCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCC
Q 024325          147 GYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK  185 (269)
Q Consensus       147 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~  185 (269)
                      |+....+..      ..+...++.....+|++++|+|+.
T Consensus        80 Gli~ga~~g------~~~~~~~l~~i~~~d~ii~VVd~~  112 (319)
T d1wxqa1          80 GLVPGAHEG------RGLGNKFLDDLRMASALIHVVDAT  112 (319)
T ss_dssp             ---------------------CCCSSTTCSEEEEEEETT
T ss_pred             Ccccchhcc------cchHHHHHHhhccceEEEEEeccc
Confidence            986543221      245567778888899999999986

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.53  E-value=5.9e-15  Score=126.21  Aligned_cols=111  Identities=19%  Similarity=0.244  Sum_probs=77.2

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCc-cc-------------cCCCCCceeEee---EEE----------------eCCc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGV-VR-------------TSDKPGLTQTIN---FFK----------------LGTK  139 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~-~~-------------~s~~~gtt~~~~---~~~----------------~~~~  139 (269)
                      .+|+++|+.++|||||+.+|+..... ..             .....|.|....   +..                .+..
T Consensus        18 RNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~   97 (341)
T d1n0ua2          18 RNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFL   97 (341)
T ss_dssp             EEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEE
T ss_pred             cEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccceE
Confidence            37999999999999999998732110 00             000112222211   111                1234


Q ss_pred             EEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCC
Q 024325          140 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  216 (269)
Q Consensus       140 ~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~  216 (269)
                      +.++||||+.+-.             .+....+..+|.+++|||+..|+..+...+++.+...++|+++|+||+|..
T Consensus        98 inliDtPGh~dF~-------------~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~~~~p~i~viNKiDr~  161 (341)
T d1n0ua2          98 INLIDSPGHVDFS-------------SEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRA  161 (341)
T ss_dssp             EEEECCCCCCSSC-------------HHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred             EEEEcCCCcHHHH-------------HHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHHcCCCeEEEEECcccc
Confidence            8999999985431             222233334999999999999999999999999999999999999999975

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=3.1e-14  Score=112.75  Aligned_cols=157  Identities=16%  Similarity=0.130  Sum_probs=93.1

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhc
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST  171 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~  171 (269)
                      ..+|+++|.+|||||||++++.-.   ....+..|... ..+...+..+.+|||+|....             .......
T Consensus         2 ~iKivllG~~~vGKTsll~r~~f~---~~~~pTiG~~~-~~~~~~~~~~~~~D~~gq~~~-------------~~~~~~~   64 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMRII---HGQDPTKGIHE-YDFEIKNVPFKMVDVGGQRSE-------------RKRWFEC   64 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH---HSCCCCSSEEE-EEEEETTEEEEEEEECC--------------------CTTS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC---CCCCCeeeeEE-EEEeeeeeeeeeecccceeee-------------ccccccc
Confidence            468999999999999999999422   11222223211 122234667999999997321             1112233


Q ss_pred             ccccceEEEEEeCCCCCCcc--------hHHHH---HH-HH---hhCCcEEEEEecCCCCC------------------c
Q 024325          172 RVSLKRVCLLIDTKWGVKPR--------DHELI---SL-ME---RSQTKYQVVLTKTDTVF------------------P  218 (269)
Q Consensus       172 ~~~~d~vl~vid~~~~~~~~--------~~~~~---~~-l~---~~~~p~iiv~NK~Dl~~------------------~  218 (269)
                      ...++.+++++|.+......        ..+..   .. +.   ..+.|+++++||+|+..                  +
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~  144 (200)
T d1zcba2          65 FDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDP  144 (200)
T ss_dssp             CTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCT
T ss_pred             ccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCc
Confidence            34588999999987543221        01222   21 21   23789999999999853                  1


Q ss_pred             hHHHHHHHHHHHHHHhcCCC----CCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          219 IDVARRAMQIEESLKANNSL----VQPVMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~----~~~vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      .+.....+.+.+.+......    ...++.+||++++||+++++.+.+.+-
T Consensus       145 ~~~~~~~~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~  195 (200)
T d1zcba2         145 HCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTIL  195 (200)
T ss_dssp             TCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHH
Confidence            22334444455544432111    123457999999999999999887653

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.48  E-value=1.1e-13  Score=117.82  Aligned_cols=155  Identities=19%  Similarity=0.216  Sum_probs=93.5

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCc-----CccccCCCCCcee-----------------Ee-eEEE------------
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKPGLTQ-----------------TI-NFFK------------  135 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~-----~~~~~s~~~gtt~-----------------~~-~~~~------------  135 (269)
                      ..++|+|.|+||||||||+++|....     +++.+...|.++.                 +. .|..            
T Consensus        50 ~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~gg~~  129 (323)
T d2qm8a1          50 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVA  129 (323)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHH
T ss_pred             CceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhcccceeeccccccccccchh
Confidence            45799999999999999999988421     2222221111111                 00 1111            


Q ss_pred             ------------eCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcc--hHHHHHHHHh
Q 024325          136 ------------LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPR--DHELISLMER  201 (269)
Q Consensus       136 ------------~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~--~~~~~~~l~~  201 (269)
                                  .|..+.++.|.|.+....         ...       ..+|..++|+.+..+...+  ..-++     
T Consensus       130 ~~~~~~i~~~~~~g~d~iiiETVG~gq~e~---------~~~-------~~~D~~v~v~~p~~GD~iQ~~k~gil-----  188 (323)
T d2qm8a1         130 AKTRETMLLCEAAGFDVILVETVGVGQSET---------AVA-------DLTDFFLVLMLPGAGDELQGIKKGIF-----  188 (323)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEEECSSSSCHH---------HHH-------TTSSEEEEEECSCC------CCTTHH-----
T ss_pred             HHHHHHHHhhccCCCCeEEEeehhhhhhhh---------hhh-------cccceEEEEeeccchhhhhhhhhhHh-----
Confidence                        134588888888765310         111       1289999999876542211  11111     


Q ss_pred             hCCcEEEEEecCCCCCchHHHHHHH-HHHHHHHhc----CCCCCCeEEeeCCCCCCHHHHHHHHHHhhhhh
Q 024325          202 SQTKYQVVLTKTDTVFPIDVARRAM-QIEESLKAN----NSLVQPVMMVSSKSGAGIRSLRTVLSKIARFA  267 (269)
Q Consensus       202 ~~~p~iiv~NK~Dl~~~~~~~~~~~-~~~~~~~~~----~~~~~~vi~vSa~~g~gi~~L~~~i~~~~~~~  267 (269)
                       .++-++|+||+|+.+......... .+...+...    ..+..|++.+||++|+|+++|.++|.+...+.
T Consensus       189 -E~aDi~vvNKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~~  258 (323)
T d2qm8a1         189 -ELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSKL  258 (323)
T ss_dssp             -HHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             -hhhheeeEeccccccchHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHHHH
Confidence             245699999999987765544332 233332221    12467899999999999999999998876543

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=99.48  E-value=8.6e-14  Score=116.03  Aligned_cols=133  Identities=24%  Similarity=0.361  Sum_probs=73.1

Q ss_pred             CCCchhhHHHHHhcCCCcceeeeeccccccc---------cCCC-CCCCCCCC--hhhhhhhhhhhhchhhhHHHhhhcc
Q 024325           17 QPSPSILSFVEDNLLGRRRPIELRRAGYNIE---------LSAP-LDNIPFST--SSERERIEENIFRNKLEFFAAAKVS   84 (269)
Q Consensus        17 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---------~~~~-~e~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~   84 (269)
                      .|..++.+.+...+.+++.++.+++.+.-..         .... ...+....  ......+...+.....+........
T Consensus        27 ~P~ss~~~~l~~~~~~Kp~IlVlNK~DLv~~~~~~~w~~~f~~~~~~~i~isa~~~~~~~~~~~~~~~~l~~~~~~~~~~  106 (273)
T d1puja_          27 IPMSSRNPMIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAK  106 (273)
T ss_dssp             STTTTSCHHHHHHCSSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCCHHHHHHHcCCCeEEEEECccCCchHHHHHHHHHHHhcCCccceeecccCCCccccchhhhhhhhhhhhhhhhc
Confidence            5778888888888888999999988664210         0000 00000000  0001111111111111111111111


Q ss_pred             CCCCCCCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcc
Q 024325           85 SSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAY  152 (269)
Q Consensus        85 ~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~  152 (269)
                        -......+|+++|.||+|||||+|+|.+. ..+.+++.||+|++..+...+..+.++||||+..+.
T Consensus       107 --~~~~~~~~v~vvG~PNvGKSsliN~L~~~-~~~~~~~~pG~Tr~~~~i~~~~~~~l~DTPGi~~p~  171 (273)
T d1puja_         107 --GVKPRAIRALIIGIPNVGKSTLINRLAKK-NIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPK  171 (273)
T ss_dssp             --TCCCCCEEEEEEESTTSSHHHHHHHHHTS-CCC------------CCEEETTTEEEEECCCCCCSC
T ss_pred             --cCCCCceEEEEEecCccchhhhhhhhhcc-ceEEECCcccccccceEEECCCCeEEecCCCccccC
Confidence              11234578999999999999999999998 678999999999999988889999999999997653

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.47  E-value=1.9e-13  Score=115.22  Aligned_cols=124  Identities=20%  Similarity=0.245  Sum_probs=79.2

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee---EEE--------------------------------
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFK--------------------------------  135 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~---~~~--------------------------------  135 (269)
                      ..|.|+++|..++|||||+|+|+|. .+.+++..|. |+-..   +..                                
T Consensus        25 ~~P~ivvvG~~SsGKSsliNaLlg~-~~lP~~~~~~-T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (299)
T d2akab1          25 DLPQIAVVGGQSAGKSSVLENFVGR-DFLPRGSGIV-TRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR  102 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTS-CCSCCCSSCS-CSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHhCC-CcCCCCCCcc-ccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHH
Confidence            5789999999999999999999998 5444544442 22110   000                                


Q ss_pred             --------------------eCCcEEEEcCCCCCCcchh---HHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcch
Q 024325          136 --------------------LGTKLCLVDLPGYGFAYAK---EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD  192 (269)
Q Consensus       136 --------------------~~~~~~lvDtpG~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~  192 (269)
                                          .-..+.++||||+......   .........+...|....  .+++++|.++...+....
T Consensus       103 ~~~~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~--~~~il~v~~a~~~~~~~~  180 (299)
T d2akab1         103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKE--NCLILAVSPANSDLANSD  180 (299)
T ss_dssp             HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTST--TEEEEEEEESSSCGGGCH
T ss_pred             hhCCCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCc--cceeeeecccccchhhhH
Confidence                                0123889999999754221   112223345555555441  345666777765555543


Q ss_pred             -HHHHHHHHhhCCcEEEEEecCCCCCc
Q 024325          193 -HELISLMERSQTKYQVVLTKTDTVFP  218 (269)
Q Consensus       193 -~~~~~~l~~~~~p~iiv~NK~Dl~~~  218 (269)
                       ..+.+.+.....++++|+||+|+..+
T Consensus       181 ~~~~~~~~~~~~~r~i~Vltk~D~~~~  207 (299)
T d2akab1         181 ALKIAKEVDPQGQRTIGVITKLDLMDE  207 (299)
T ss_dssp             HHHHHHHHCTTCSSEEEEEECGGGSCT
T ss_pred             HHHHHHHhCcCCCceeeEEeccccccc
Confidence             35556665667899999999999875

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.46  E-value=7.7e-14  Score=109.70  Aligned_cols=154  Identities=12%  Similarity=0.063  Sum_probs=92.3

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR  172 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~  172 (269)
                      .+|+++|..|+|||||++++...+ .  .  ..|+ ....+......+.+|||+|....          ..+...|   .
T Consensus         3 ~KivllG~~~vGKTsl~~r~~~~~-~--~--t~~~-~~~~~~~~~~~~~i~D~~Gq~~~----------~~~~~~~---~   63 (195)
T d1svsa1           3 VKLLLLGAGESGKSTIVKQMKIIH-E--A--GTGI-VETHFTFKDLHFKMFDVGGQRSE----------RKKWIHC---F   63 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH-S--C--CCSE-EEEEEEETTEEEEEEEECCSGGG----------GGGGGGG---C
T ss_pred             eEEEEECCCCCCHHHHHHHHhhCC-C--C--CccE-EEEEEEeeeeeeeeecccccccc----------ccchhhc---c
Confidence            479999999999999999997652 1  1  1111 11223334667999999997432          1111222   3


Q ss_pred             cccceEEEEEeCCCCCCcc--------hHHH----HHHHH---hhCCcEEEEEecCCCCC-----------------chH
Q 024325          173 VSLKRVCLLIDTKWGVKPR--------DHEL----ISLME---RSQTKYQVVLTKTDTVF-----------------PID  220 (269)
Q Consensus       173 ~~~d~vl~vid~~~~~~~~--------~~~~----~~~l~---~~~~p~iiv~NK~Dl~~-----------------~~~  220 (269)
                      ..++++++|+|........        ..+.    ...+.   ....|+++++||+|+..                 ...
T Consensus        64 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~  143 (195)
T d1svsa1          64 EGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNT  143 (195)
T ss_dssp             TTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSS
T ss_pred             cCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCccc
Confidence            3499999999876422111        1111    11121   23579999999998631                 112


Q ss_pred             HHHHHHHHHHHHHhcCC----CCCCeEEeeCCCCCCHHHHHHHHHHhhh
Q 024325          221 VARRAMQIEESLKANNS----LVQPVMMVSSKSGAGIRSLRTVLSKIAR  265 (269)
Q Consensus       221 ~~~~~~~~~~~~~~~~~----~~~~vi~vSa~~g~gi~~L~~~i~~~~~  265 (269)
                      .......+...+.....    ...+++++||++|.||+++|+.+.+.+-
T Consensus       144 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il  192 (195)
T d1svsa1         144 YEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVII  192 (195)
T ss_dssp             HHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHH
Confidence            22223333333333211    1234668999999999999999988764

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.43  E-value=2.8e-13  Score=114.63  Aligned_cols=123  Identities=20%  Similarity=0.280  Sum_probs=71.8

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEE-----------------------------------
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-----------------------------------  135 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~-----------------------------------  135 (269)
                      ..|.|+++|..++|||||||+|+|. .+.+++..|. |+-.....                                   
T Consensus        23 ~lP~ivVvG~~ssGKSSliNaLlG~-~~lP~~~~~~-T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (306)
T d1jwyb_          23 DLPQIVVVGSQSSGKSSVLENIVGR-DFLPRGSGIV-TRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIRE  100 (306)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHTS-CCCCC---------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHH
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHhCC-CCCCCCCCcc-ccCCEEEEEecCCcccCccchhhhhHHhhcCCceecCHHHHHH
Confidence            4689999999999999999999998 4444444332 22111000                                   


Q ss_pred             ----------------------------eCCcEEEEcCCCCCCcchhHH---HHHHHHHHHHHHHhcccccceE-EEEEe
Q 024325          136 ----------------------------LGTKLCLVDLPGYGFAYAKEE---VKDAWEELVKEYVSTRVSLKRV-CLLID  183 (269)
Q Consensus       136 ----------------------------~~~~~~lvDtpG~~~~~~~~~---~~~~~~~~~~~~~~~~~~~d~v-l~vid  183 (269)
                                                  .-..+.+|||||+......+.   .......+...|...   ++.+ ++|++
T Consensus       101 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~---~~~~il~v~~  177 (306)
T d1jwyb_         101 EIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKK---QNAIIVAVTP  177 (306)
T ss_dssp             HHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHS---TTEEEEEEEE
T ss_pred             HHHHHHHHhcCCCCcccccceEEEecCCCCCCceEecCCCccccccCCcchhHHHHHHHHHHHHHhC---CCceeEEeec
Confidence                                        012388999999976432221   112233455556554   6654 44556


Q ss_pred             CCCCCCcc-hHHHHHHHHhhCCcEEEEEecCCCCCc
Q 024325          184 TKWGVKPR-DHELISLMERSQTKYQVVLTKTDTVFP  218 (269)
Q Consensus       184 ~~~~~~~~-~~~~~~~l~~~~~p~iiv~NK~Dl~~~  218 (269)
                      +...+... ...+++.+.....++++|+||+|....
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~r~i~Vitk~D~~~~  213 (306)
T d1jwyb_         178 ANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDK  213 (306)
T ss_dssp             SSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCS
T ss_pred             ccccccccHHHHHHHHhCcCCCeEEEEEeccccccc
Confidence            65444333 345666665556789999999999754

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=2.4e-13  Score=107.28  Aligned_cols=157  Identities=12%  Similarity=0.076  Sum_probs=93.8

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEe-eEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST  171 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~-~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~  171 (269)
                      .+|+++|..|||||||++++.... .   +..|...-+. .+......+.+|||+|.....          .   .....
T Consensus         3 ~Kiv~lG~~~vGKTsll~r~~~~~-~---~~~pTiG~~~~~~~~~~~~~~~~d~~g~~~~~----------~---~~~~~   65 (200)
T d2bcjq2           3 LKLLLLGTGESGKSTFIKQMRIIH-G---SGVPTTGIIEYPFDLQSVIFRMVDVGGQRSER----------R---KWIHC   65 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT-S---SCCCCCSCEEEEEECSSCEEEEEECCCSTTGG----------G---GGGGG
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC-C---CCCceeeEEEEEEeccceeeeecccccccccc----------c---ccccc
Confidence            479999999999999999998762 2   2222211222 222346779999999974321          1   11122


Q ss_pred             ccccceEEEEEeCCCCCCc-------c-h----HHHHHHHHh---hCCcEEEEEecCCCCCch-----------------
Q 024325          172 RVSLKRVCLLIDTKWGVKP-------R-D----HELISLMER---SQTKYQVVLTKTDTVFPI-----------------  219 (269)
Q Consensus       172 ~~~~d~vl~vid~~~~~~~-------~-~----~~~~~~l~~---~~~p~iiv~NK~Dl~~~~-----------------  219 (269)
                      ...++.+++++|.+.....       . -    ..+...+..   .+.|++++.||+|+....                 
T Consensus        66 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~  145 (200)
T d2bcjq2          66 FENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQ  145 (200)
T ss_dssp             CSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCS
T ss_pred             ccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCc
Confidence            3348899999998643111       0 0    123333332   368999999999985211                 


Q ss_pred             -HHHHHHHHHHHHHHhcC---CCCCCeEEeeCCCCCCHHHHHHHHHHhhhh
Q 024325          220 -DVARRAMQIEESLKANN---SLVQPVMMVSSKSGAGIRSLRTVLSKIARF  266 (269)
Q Consensus       220 -~~~~~~~~~~~~~~~~~---~~~~~vi~vSa~~g~gi~~L~~~i~~~~~~  266 (269)
                       +.......+...+....   .....++++||++|+|++++|+.|.+.+..
T Consensus       146 ~~~~~~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~  196 (200)
T d2bcjq2         146 RDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ  196 (200)
T ss_dssp             SCHHHHHHHHHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHH
Confidence             11122222332222211   112336789999999999999999887643

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.37  E-value=1.4e-13  Score=116.11  Aligned_cols=89  Identities=18%  Similarity=0.191  Sum_probs=67.0

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe--------------------CCcEEEEcCCCCCC
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--------------------GTKLCLVDLPGYGF  150 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~--------------------~~~~~lvDtpG~~~  150 (269)
                      ...+|+++|.||||||||+|+|++. ..+.++++|+||.+.+....                    ...+.++|.||+..
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~~-~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~   87 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITKS-VLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   87 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHS-TTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCC-CCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccc
Confidence            3468999999999999999999987 45678999999988643221                    23589999999865


Q ss_pred             cchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCC
Q 024325          151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW  186 (269)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~  186 (269)
                      ..+..      ..+...|+.....+|++++|+|+..
T Consensus        88 gA~~g------~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          88 GASTG------VGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCCSS------SSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             ccccc------cccHHHHHHHhhccceeEEEEeccC
Confidence            43221      1223466666777999999999864

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.35  E-value=2.3e-13  Score=113.65  Aligned_cols=85  Identities=24%  Similarity=0.257  Sum_probs=59.8

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe--------------------CCcEEEEcCCCCCCcc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--------------------GTKLCLVDLPGYGFAY  152 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~--------------------~~~~~lvDtpG~~~~~  152 (269)
                      .+|++||.||||||||+|+|++..  ..++++|+||-+.+....                    ...+.++|.||+....
T Consensus         3 ~~~GivG~Pn~GKSTlf~~lt~~~--~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga   80 (278)
T d1jala1           3 FKCGIVGLPNVGKSTLFNALTKAG--IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA   80 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred             ceEEEECCCCCCHHHHHHHHHCCC--CccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCc
Confidence            589999999999999999999983  678999999988653322                    1248899999997643


Q ss_pred             hhHHHHHHHHHHHHHHHhcccccceEEEEEeCC
Q 024325          153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK  185 (269)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~  185 (269)
                      +..      ..+...|++....+|++++|+|+.
T Consensus        81 ~~g------~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          81 SKG------EGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HHH------GGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             ccC------CCccHHHHHHHHhccceEEEeecc
Confidence            221      123345666677799999999875

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.24  E-value=2.3e-11  Score=97.82  Aligned_cols=155  Identities=12%  Similarity=0.104  Sum_probs=91.1

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhc
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST  171 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~  171 (269)
                      ..+|+++|..|||||||++++...+    ..+..|... ..+...+..+.+||++|.....      .       .....
T Consensus         6 ~~KilllG~~~vGKTsll~~~~~~~----~~pTiG~~~-~~~~~~~~~~~~~D~~Gq~~~r------~-------~w~~~   67 (221)
T d1azta2           6 THRLLLLGAGESGKSTIVKQMRILH----VVLTSGIFE-TKFQVDKVNFHMFDVGGQRDER------R-------KWIQC   67 (221)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHH----CCCCCSCEE-EEEEETTEEEEEEECCCSTTTT------T-------GGGGG
T ss_pred             cCEEEEECCCCCCHHHHHHHHhcCC----cCCCCCeEE-EEEEECcEEEEEEecCccceec------c-------chhhh
Confidence            3589999999999999999987542    123333221 1222346789999999974321      1       11222


Q ss_pred             ccccceEEEEEeCCCCCC--------cchHHH---HHH-HHh---hCCcEEEEEecCCCCCchH----------------
Q 024325          172 RVSLKRVCLLIDTKWGVK--------PRDHEL---ISL-MER---SQTKYQVVLTKTDTVFPID----------------  220 (269)
Q Consensus       172 ~~~~d~vl~vid~~~~~~--------~~~~~~---~~~-l~~---~~~p~iiv~NK~Dl~~~~~----------------  220 (269)
                      ...++.+++++|.+....        ..-.+.   +.. +..   .++|+++++||+|+....-                
T Consensus        68 ~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~  147 (221)
T d1azta2          68 FNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFAR  147 (221)
T ss_dssp             CTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGG
T ss_pred             cccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccc
Confidence            345899999999874211        001122   222 221   3589999999999863211                


Q ss_pred             ----------------HHHHHHHHHHHHHhc----CCCCCC--eEEeeCCCCCCHHHHHHHHHHhh
Q 024325          221 ----------------VARRAMQIEESLKAN----NSLVQP--VMMVSSKSGAGIRSLRTVLSKIA  264 (269)
Q Consensus       221 ----------------~~~~~~~~~~~~~~~----~~~~~~--vi~vSa~~g~gi~~L~~~i~~~~  264 (269)
                                      .......+...+...    ......  ...+||.++.++..+++.+.+.+
T Consensus       148 ~~~~~~~~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I  213 (221)
T d1azta2         148 YTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDII  213 (221)
T ss_dssp             CCCCTTCCCCTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHH
T ss_pred             cCCcccccccCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHH
Confidence                            112223333333221    111122  35789999999999998776654

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.92  E-value=5e-10  Score=89.34  Aligned_cols=58  Identities=36%  Similarity=0.445  Sum_probs=42.1

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCcccc---CCC----CCceeEeeEEEeCCcEEEEcCCCCCCc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRT---SDK----PGLTQTINFFKLGTKLCLVDLPGYGFA  151 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~---s~~----~gtt~~~~~~~~~~~~~lvDtpG~~~~  151 (269)
                      ...+++|.+|+|||||+|+|.+.. ...+   +..    ..||+....+..+..-.++||||+.+-
T Consensus        96 kt~~~~G~SGVGKSTLiN~L~~~~-~~~T~~vs~~~~rGrHTTt~~~l~~l~~gg~iiDTPG~r~~  160 (225)
T d1u0la2          96 KISTMAGLSGVGKSSLLNAINPGL-KLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANL  160 (225)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTC-CCC-------------CCCSCCEEECTTSCEEESSCSSTTC
T ss_pred             CeEEEECCCCCCHHHHHHhhcchh-hhhccCcccccCCCCccccceeEEEECCCcEEEeCCccccc
Confidence            478999999999999999999863 2222   222    237777777777666799999999653

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.70  E-value=2.5e-08  Score=82.24  Aligned_cols=87  Identities=14%  Similarity=0.187  Sum_probs=67.7

Q ss_pred             hcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCC
Q 024325          170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS  249 (269)
Q Consensus       170 ~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~  249 (269)
                      ...+.+|+|++|+|+..+++..+..+.+.+.  ++|.|+|+||+|+.++.......+.+.       ....+++++|+.+
T Consensus        11 ~~i~~~DvIl~V~DaR~P~ss~~~~l~~~~~--~Kp~IlVlNK~DLv~~~~~~~w~~~f~-------~~~~~~i~isa~~   81 (273)
T d1puja_          11 EKLKLIDIVYELVDARIPMSSRNPMIEDILK--NKPRIMLLNKADKADAAVTQQWKEHFE-------NQGIRSLSINSVN   81 (273)
T ss_dssp             HHGGGCSEEEEEEETTSTTTTSCHHHHHHCS--SSCEEEEEECGGGSCHHHHHHHHHHHH-------TTTCCEEECCTTT
T ss_pred             HHHHhCCEEEEEEECCCCCCCCCHHHHHHHc--CCCeEEEEECccCCchHHHHHHHHHHH-------hcCCccceeeccc
Confidence            3455699999999999999988877766664  789999999999998765544433322       2246789999999


Q ss_pred             CCCHHHHHHHHHHhhh
Q 024325          250 GAGIRSLRTVLSKIAR  265 (269)
Q Consensus       250 g~gi~~L~~~i~~~~~  265 (269)
                      +.|..++...+.+.+.
T Consensus        82 ~~~~~~~~~~~~~~l~   97 (273)
T d1puja_          82 GQGLNQIVPASKEILQ   97 (273)
T ss_dssp             CTTGGGHHHHHHHHHH
T ss_pred             CCCccccchhhhhhhh
Confidence            9999998887776654

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.69  E-value=2.8e-09  Score=85.20  Aligned_cols=57  Identities=33%  Similarity=0.532  Sum_probs=35.5

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCccc---cCCC--CC--ceeEeeEEEeCCcEEEEcCCCCCCc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGVVR---TSDK--PG--LTQTINFFKLGTKLCLVDLPGYGFA  151 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~~~---~s~~--~g--tt~~~~~~~~~~~~~lvDtpG~~~~  151 (269)
                      ...+++|++|+|||||+|+|.+.. ...   ++..  .|  ||+....+..+. -.++||||+.+-
T Consensus        98 ~~~vl~G~SGVGKSSLiN~L~~~~-~~~t~~vs~~~~rGrHTTt~~~l~~~~g-g~iiDTPG~r~~  161 (231)
T d1t9ha2          98 KTTVFAGQSGVGKSSLLNAISPEL-GLRTNEISEHLGRGKHTTRHVELIHTSG-GLVADTPGFSSL  161 (231)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC--------------------CCCCCEEEETT-EEEESSCSCSSC
T ss_pred             ceEEEECCCCccHHHHHHhhccHh-HhhhcccccccCCCceeeeeEEEEecCC-CEEEECCccccc
Confidence            467899999999999999999873 222   2222  22  565555444443 468899999753

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.63  E-value=3.1e-07  Score=72.33  Aligned_cols=102  Identities=16%  Similarity=0.162  Sum_probs=52.9

Q ss_pred             CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCC
Q 024325          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  216 (269)
Q Consensus       137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~  216 (269)
                      +..+.+|||||................+..    .. ..+-+++|+++..+... -..........++ --+++||.|-.
T Consensus        94 ~~d~IlIDTaGr~~~~~~~~~~~el~~~~~----~~-~~~~~~LVl~a~~~~~~-~~~~~~~~~~~~~-~~lI~TKlDet  166 (211)
T d1j8yf2          94 KMEIIIVDTAGRHGYGEEAALLEEMKNIYE----AI-KPDEVTLVIDASIGQKA-YDLASKFNQASKI-GTIIITKMDGT  166 (211)
T ss_dssp             TCSEEEEECCCSCCTTCHHHHHHHHHHHHH----HH-CCSEEEEEEEGGGGGGH-HHHHHHHHHHCTT-EEEEEECTTSC
T ss_pred             CCceEEEecCCcCccchhhHHHHHHHHHHh----hc-CCceEEEEEecccCcch-HHHHhhhhcccCc-ceEEEecccCC
Confidence            456999999997432111111111122221    11 25678899998743221 1233333333333 34679999987


Q ss_pred             CchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHH
Q 024325          217 FPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL  256 (269)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L  256 (269)
                      .....  ...    ...   ....|+.++|  +|+++++|
T Consensus       167 ~~~G~--~l~----~~~---~~~lPi~~it--~Gq~v~DL  195 (211)
T d1j8yf2         167 AKGGG--ALS----AVA---ATGATIKFIG--TGEKIDEL  195 (211)
T ss_dssp             SCHHH--HHH----HHH---TTTCCEEEEE--CSSSTTCE
T ss_pred             CcccH--HHH----HHH---HHCcCEEEEe--CCCCcccC
Confidence            54321  111    111   2368998888  57777654

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.60  E-value=1.1e-07  Score=75.77  Aligned_cols=25  Identities=16%  Similarity=0.344  Sum_probs=22.6

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcC
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      +.|.+++.|+.|||||||+|+++..
T Consensus         2 ~iPv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           2 PIAVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CCCEEEEeeCCCCCHHHHHHHHHhc
Confidence            4689999999999999999999864

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.56  E-value=2.2e-07  Score=73.69  Aligned_cols=85  Identities=21%  Similarity=0.279  Sum_probs=59.3

Q ss_pred             cccceEEEEEeCCCC-CCcch-HHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCC
Q 024325          173 VSLKRVCLLIDTKWG-VKPRD-HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSG  250 (269)
Q Consensus       173 ~~~d~vl~vid~~~~-~~~~~-~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g  250 (269)
                      .++|.+++|+.+..+ +...- .+++-.....++|.++|+||+||.++.+.......    ...+ ...++++.+|++++
T Consensus         9 ANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~~i~pvIvlnK~DL~~~~~~~~~~~~----~~~~-~~~~~v~~vSa~~~   83 (225)
T d1u0la2           9 ANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVREL----EEIY-SGLYPIVKTSAKTG   83 (225)
T ss_dssp             ESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHH----HHHH-TTTSCEEECCTTTC
T ss_pred             ccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCcccCCHHHHHHHHHh----hccc-ccceeEEEeccccc
Confidence            358989999876543 22221 34555566789999999999999987654433322    2222 22478999999999


Q ss_pred             CCHHHHHHHHHH
Q 024325          251 AGIRSLRTVLSK  262 (269)
Q Consensus       251 ~gi~~L~~~i~~  262 (269)
                      .|+++|..++..
T Consensus        84 ~g~~~L~~~l~~   95 (225)
T d1u0la2          84 MGIEELKEYLKG   95 (225)
T ss_dssp             TTHHHHHHHHSS
T ss_pred             hhHhhHHHHhcC
Confidence            999999998753

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.46  E-value=2.3e-06  Score=67.33  Aligned_cols=104  Identities=14%  Similarity=0.172  Sum_probs=52.5

Q ss_pred             CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhccc-ccceEEEEEeCCCCCCcch-HHHHHHHHhhCCcEEEEEecCC
Q 024325          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV-SLKRVCLLIDTKWGVKPRD-HELISLMERSQTKYQVVLTKTD  214 (269)
Q Consensus       137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~vl~vid~~~~~~~~~-~~~~~~l~~~~~p~iiv~NK~D  214 (269)
                      +..+.||||||...... + ..+.+..+......... ..+.+++|+|+..+  ..+ .++....... -+--++++|.|
T Consensus        93 ~~d~ilIDTaGr~~~d~-~-~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~~~~~~~~~~-~~~~lI~TKlD  167 (213)
T d1vmaa2          93 NKDVVIIDTAGRLHTKK-N-LMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEAV-NVTGIILTKLD  167 (213)
T ss_dssp             TCSEEEEEECCCCSCHH-H-HHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHHS-CCCEEEEECGG
T ss_pred             CCCEEEEeccccccchH-H-HHHHHHHHHhhhhhccccccceeEEeeccccC--cchhhhhhhhcccc-CCceEEEeccc
Confidence            44689999999754311 1 11122222222111111 14668899998632  111 2222222222 34457899999


Q ss_pred             CCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHH
Q 024325          215 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL  256 (269)
Q Consensus       215 l~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L  256 (269)
                      -......  .....    ..   ...|+.+++  +|+++++|
T Consensus       168 e~~~~G~--~l~~~----~~---~~~Pi~~i~--~Gq~v~Dl  198 (213)
T d1vmaa2         168 GTAKGGI--TLAIA----RE---LGIPIKFIG--VGEKAEDL  198 (213)
T ss_dssp             GCSCTTH--HHHHH----HH---HCCCEEEEE--CSSSGGGE
T ss_pred             CCCcccH--HHHHH----HH---HCCCEEEEe--CCCCcccC
Confidence            7653221  11111    11   158998888  57777664

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.42  E-value=9.2e-08  Score=76.20  Aligned_cols=86  Identities=14%  Similarity=0.180  Sum_probs=61.6

Q ss_pred             cccceEEEEEeCCCC-CCcch-HHHHHHHHhhCCcEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCC
Q 024325          173 VSLKRVCLLIDTKWG-VKPRD-HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSG  250 (269)
Q Consensus       173 ~~~d~vl~vid~~~~-~~~~~-~~~~~~l~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g  250 (269)
                      .++|.+++|+.+..+ +...- .+++-.....+++.++|+||+||.++.+.....+.+.+....   .+++++.+|++++
T Consensus         9 ANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~---~g~~v~~~Sa~~~   85 (231)
T d1t9ha2           9 CNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRN---IGYDVYLTSSKDQ   85 (231)
T ss_dssp             ECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHH---HTCCEEECCHHHH
T ss_pred             cccCEEEEEEECCCCCCCHHHHHHHHHHHHHcCCCEEEEEecccccccHHHHHHHHHHHHHHhh---ccccceeeecCCh
Confidence            358989999887543 22221 345555666789999999999999876655554444443332   3689999999999


Q ss_pred             CCHHHHHHHHH
Q 024325          251 AGIRSLRTVLS  261 (269)
Q Consensus       251 ~gi~~L~~~i~  261 (269)
                      .|+++|..+|.
T Consensus        86 ~gl~~L~~~l~   96 (231)
T d1t9ha2          86 DSLADIIPHFQ   96 (231)
T ss_dssp             TTCTTTGGGGT
T ss_pred             hHHHHHHHhhc
Confidence            99999987764

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.39  E-value=5.4e-06  Score=64.97  Aligned_cols=104  Identities=18%  Similarity=0.163  Sum_probs=52.4

Q ss_pred             CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcc--cccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCC
Q 024325          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR--VSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD  214 (269)
Q Consensus       137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~D  214 (269)
                      +..+.+|||||....  .....+.+..+.+. ....  ...+-+++|+|+..+.. .-.+........ -+--++++|.|
T Consensus        91 ~~d~ilIDTaGr~~~--d~~~~~el~~l~~~-~~~~~~~~p~~~~LVl~a~~~~~-~~~~~~~~~~~~-~~~~lIlTKlD  165 (211)
T d2qy9a2          91 NIDVLIADTAGRLQN--KSHLMEELKKIVRV-MKKLDVEAPHEVMLTIDASTGQN-AVSQAKLFHEAV-GLTGITLTKLD  165 (211)
T ss_dssp             TCSEEEECCCCCGGG--HHHHHHHHHHHHHH-HTTTCTTCCSEEEEEEEGGGTHH-HHHHHHHHHHHS-CCCEEEEECCT
T ss_pred             CCCEEEeccCCCccc--cHHHHHHHHHHHHH-HhhhcccCcceeeeehhcccCcc-hHHHHhhhhhcc-CCceEEEeecC
Confidence            346899999997432  11111222223222 1111  12467889999864311 112233333322 23457799999


Q ss_pred             CCCchHHHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHH
Q 024325          215 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL  256 (269)
Q Consensus       215 l~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L  256 (269)
                      -......  .....    .   ....|+.+++  +|+++++|
T Consensus       166 e~~~~G~--~l~~~----~---~~~~Pi~~i~--~Gq~v~Dl  196 (211)
T d2qy9a2         166 GTAKGGV--IFSVA----D---QFGIPIRYIG--VGERIEDL  196 (211)
T ss_dssp             TCTTTTH--HHHHH----H---HHCCCEEEEE--CSSSGGGE
T ss_pred             CCCCccH--HHHHH----H---HHCCCEEEEe--CCCCcccC
Confidence            7654221  11111    1   1258998888  67777653

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.20  E-value=2.4e-07  Score=72.52  Aligned_cols=118  Identities=14%  Similarity=-0.005  Sum_probs=58.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEe-C-CcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhc
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL-G-TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST  171 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~-~-~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~  171 (269)
                      .|+++|.||+|||||.++|..... ...-+.+..+.|...... + ....-.+.++...  ...................
T Consensus         4 li~l~GlpgsGKSTla~~L~~~l~-~~~~~~~~~~~D~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~   80 (213)
T d1bifa1           4 LIVMVGLPARGKTYISKKLTRYLN-FIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEE--GLKIRKQCALAALNDVRKF   80 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHH--HHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH-hcCCCCeEEcccceehhhcccccccccccccccc--chhhHHHHHHHHHHHHHHH
Confidence            588999999999999999986421 111111112222110000 0 0000011111100  0011111111222222222


Q ss_pred             ccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCC
Q 024325          172 RVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD  214 (269)
Q Consensus       172 ~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~D  214 (269)
                      +......++++|+..........+.+.+...+.+++++.++++
T Consensus        81 ~~~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~  123 (213)
T d1bifa1          81 LSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICV  123 (213)
T ss_dssp             HHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCC
T ss_pred             HHhcCCCEEEeecCCccHHHHHHHHHHHHhcCCeEEEEEeecc
Confidence            2224455678898766555566777777778889999888875

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.20  E-value=1.7e-05  Score=61.94  Aligned_cols=105  Identities=20%  Similarity=0.229  Sum_probs=53.9

Q ss_pred             CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHh-cccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCC
Q 024325          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS-TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDT  215 (269)
Q Consensus       137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl  215 (269)
                      +..+.++||||..... .+.+ +.+..+.+.... .....+-+++|+|+..+. ..-.++.......+. --+++||.|-
T Consensus        88 ~~d~ilIDTaGr~~~d-~~l~-~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~-~~~~~~~~~~~~~~~-~~lI~TKlDe  163 (207)
T d1okkd2          88 GYDLLFVDTAGRLHTK-HNLM-EELKKVKRAIAKADPEEPKEVWLVLDAVTGQ-NGLEQAKKFHEAVGL-TGVIVTKLDG  163 (207)
T ss_dssp             TCSEEEECCCCCCTTC-HHHH-HHHHHHHHHHHHHCTTCCSEEEEEEETTBCT-HHHHHHHHHHHHHCC-SEEEEECTTS
T ss_pred             CCCEEEcCccccchhh-HHHH-HHHHHHHHHhhhcccCCCceEEEEeecccCc-hHHHHHHHhhhccCC-ceEEEeccCC
Confidence            4568999999975432 1111 122222221111 112356789999987542 222233333343333 3567999997


Q ss_pred             CCchH-HHHHHHHHHHHHHhcCCCCCCeEEeeCCCCCCHHHHH
Q 024325          216 VFPID-VARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLR  257 (269)
Q Consensus       216 ~~~~~-~~~~~~~~~~~~~~~~~~~~~vi~vSa~~g~gi~~L~  257 (269)
                      ..... +...       ..   ....|+.++|.  |++.++|.
T Consensus       164 t~~~G~~l~~-------~~---~~~~Pi~~i~~--Gq~p~Dl~  194 (207)
T d1okkd2         164 TAKGGVLIPI-------VR---TLKVPIKFVGV--GEGPDDLQ  194 (207)
T ss_dssp             SCCCTTHHHH-------HH---HHCCCEEEEEC--SSSTTCEE
T ss_pred             CCCccHHHHH-------HH---HHCCCEEEEeC--CCChHhCc
Confidence            64322 1111       11   11588888884  66665543

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.03  E-value=3.2e-05  Score=60.36  Aligned_cols=73  Identities=21%  Similarity=0.164  Sum_probs=38.6

Q ss_pred             CCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCCC
Q 024325          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  216 (269)
Q Consensus       137 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl~  216 (269)
                      +..+.+|||||...... ..+ ..+..+.+    . ...+-+++|+|+..+  ...........+.-..--++++|.|-.
T Consensus        92 ~~d~vlIDTaGr~~~d~-~~~-~el~~~~~----~-~~~~~~llv~~a~~~--~~~~~~~~~f~~~~~~~~~I~TKlDe~  162 (207)
T d1ls1a2          92 ARDLILVDTAGRLQIDE-PLM-GELARLKE----V-LGPDEVLLVLDAMTG--QEALSVARAFDEKVGVTGLVLTKLDGD  162 (207)
T ss_dssp             TCCEEEEECCCCSSCCH-HHH-HHHHHHHH----H-HCCSEEEEEEEGGGT--HHHHHHHHHHHHHTCCCEEEEECGGGC
T ss_pred             cCcceeecccccchhhh-hhH-HHHHHHHh----h-cCCceEEEEeccccc--hhHHHHHHHHHhhCCCCeeEEeecCcc
Confidence            44689999999855321 111 22222221    1 136788999998643  222222222222112334779999976


Q ss_pred             Cc
Q 024325          217 FP  218 (269)
Q Consensus       217 ~~  218 (269)
                      ..
T Consensus       163 ~~  164 (207)
T d1ls1a2         163 AR  164 (207)
T ss_dssp             SS
T ss_pred             cc
Confidence            54

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.96  E-value=1.5e-05  Score=60.13  Aligned_cols=22  Identities=23%  Similarity=0.602  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      +|+++|++|+|||||++.+++.
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCcHHHHHHHHHHhc
Confidence            6999999999999999999985

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=2.2e-05  Score=64.15  Aligned_cols=60  Identities=25%  Similarity=0.279  Sum_probs=41.4

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcCccccCC-CCCceeEeeEEE------eCCcEEEEcCCCCCCc
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-KPGLTQTINFFK------LGTKLCLVDLPGYGFA  151 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~-~~gtt~~~~~~~------~~~~~~lvDtpG~~~~  151 (269)
                      ...|+++|+.++|||+|+|.|++......+++ ...+|..+-.+.      .+..+.++||.|+.+.
T Consensus        32 v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~~   98 (277)
T d1f5na2          32 MVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDV   98 (277)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCG
T ss_pred             EEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEeccccccc
Confidence            55899999999999999999998743222222 223555543322      1446899999999764

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.71  E-value=8.4e-06  Score=60.94  Aligned_cols=24  Identities=38%  Similarity=0.639  Sum_probs=21.9

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .|.++|+|++|||||||+++|...
T Consensus         2 ~Pvi~itG~~GSGKTTL~~~L~~~   25 (170)
T d1np6a_           2 IPLLAFAAWSGTGKTTLLKKLIPA   25 (170)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHH
Confidence            589999999999999999999864

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.48  E-value=0.00046  Score=51.84  Aligned_cols=25  Identities=16%  Similarity=0.220  Sum_probs=21.6

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcC
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ....|+++|.|||||||+...++..
T Consensus        13 ~p~liil~G~pGsGKST~a~~l~~~   37 (172)
T d1yj5a2          13 NPEVVVAVGFPGAGKSTFIQEHLVS   37 (172)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            4457999999999999999998765

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.29  E-value=5.8e-05  Score=56.21  Aligned_cols=25  Identities=32%  Similarity=0.575  Sum_probs=22.3

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCc
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      .|+|+++|+|||||||+.+.|....
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~~l   28 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELASKS   28 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            4789999999999999999998753

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.25  E-value=0.00036  Score=56.36  Aligned_cols=23  Identities=26%  Similarity=0.449  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .++++||+||+|||+++..|...
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHHH
Confidence            37999999999999999998875

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.24  E-value=6.4e-05  Score=56.50  Aligned_cols=25  Identities=28%  Similarity=0.457  Sum_probs=22.3

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCc
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      ..+|+|.|++|+|||||.++|....
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh
Confidence            3579999999999999999998764

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.07  E-value=0.00015  Score=54.08  Aligned_cols=22  Identities=14%  Similarity=0.286  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .++|+|++|||||||+++|+..
T Consensus         3 ii~I~G~~gSGKTTli~~l~~~   24 (165)
T d1xjca_           3 VWQVVGYKHSGKTTLMEKWVAA   24 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            5789999999999999998754

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.00018  Score=54.50  Aligned_cols=37  Identities=19%  Similarity=0.236  Sum_probs=26.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeE
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT  130 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~  130 (269)
                      -|+++|++|+|||||++.|+....-.+....+-||+.
T Consensus         5 ~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~v~~TTR~   41 (178)
T d1kgda_           5 TLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRP   41 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSC
T ss_pred             cEEEECCCCCCHHHHHHHHHHhCCcCeeeccccccCC
Confidence            4899999999999999999865322233334445554

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.00  E-value=0.00023  Score=52.96  Aligned_cols=25  Identities=24%  Similarity=0.365  Sum_probs=22.4

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcC
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ...+|++.|+|||||||+.+.|...
T Consensus         4 k~~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           4 KGINILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            4568999999999999999999875

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.99  E-value=0.00016  Score=54.80  Aligned_cols=22  Identities=32%  Similarity=0.588  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .|+++|++|||||||++.|...
T Consensus         4 iivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           4 VVVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            6889999999999999999876

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=96.99  E-value=0.00017  Score=57.37  Aligned_cols=24  Identities=33%  Similarity=0.552  Sum_probs=22.0

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      -.|+++|++|||||||++.|.|-.
T Consensus        30 e~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          30 EVIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcC
Confidence            379999999999999999999864

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.98  E-value=0.00024  Score=54.18  Aligned_cols=27  Identities=15%  Similarity=0.267  Sum_probs=22.7

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcCc
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      +..+.|+++|+|||||||+...|....
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            344678999999999999999998753

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.98  E-value=0.00012  Score=55.91  Aligned_cols=21  Identities=38%  Similarity=0.605  Sum_probs=19.7

Q ss_pred             EEEEcCCCCChHHHHHHHhcC
Q 024325           95 IAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        95 v~ivG~~~~GKSsLin~l~~~  115 (269)
                      |+|+|++|||||||++.|+..
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999876

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.96  E-value=0.00022  Score=54.57  Aligned_cols=27  Identities=19%  Similarity=0.359  Sum_probs=24.2

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcCc
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      +..|.|+++|+|||||||+...|....
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            567899999999999999999998864

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.94  E-value=0.00018  Score=54.82  Aligned_cols=25  Identities=12%  Similarity=0.313  Sum_probs=22.1

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCc
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      .++|+|+|+|||||||+.+.|....
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4579999999999999999998764

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=96.91  E-value=0.00022  Score=56.80  Aligned_cols=24  Identities=46%  Similarity=0.643  Sum_probs=21.8

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      -.++++|++|||||||++.|.+-.
T Consensus        29 e~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          29 SIIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            479999999999999999999863

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.90  E-value=0.00022  Score=57.25  Aligned_cols=24  Identities=38%  Similarity=0.637  Sum_probs=21.9

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      -.++++|++|||||||++.|++-.
T Consensus        42 e~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          42 KTVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             CEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             CEEEEECCCCChHHHHHHHHhccc
Confidence            379999999999999999999863

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.89  E-value=0.00023  Score=51.79  Aligned_cols=22  Identities=23%  Similarity=0.232  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .|++.|.||||||||.+.|...
T Consensus         4 lIii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           4 IILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            5789999999999999998754

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.88  E-value=0.00025  Score=55.96  Aligned_cols=24  Identities=33%  Similarity=0.347  Sum_probs=21.6

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      =.++++|++|||||||++.+.|-.
T Consensus        32 e~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          32 EFVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCcchhhHhccCCC
Confidence            379999999999999999999863

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.87  E-value=0.00024  Score=54.97  Aligned_cols=23  Identities=22%  Similarity=0.579  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCc
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      .++++|+.|||||||++.|+|-.
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            68999999999999999999863

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.00026  Score=56.71  Aligned_cols=24  Identities=25%  Similarity=0.372  Sum_probs=22.0

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      -.++++|++|||||||++.|.+-.
T Consensus        41 e~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          41 EVTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhccc
Confidence            479999999999999999999864

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.84  E-value=0.00024  Score=52.82  Aligned_cols=23  Identities=26%  Similarity=0.476  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      |+|+++|.+||||||+-+.|...
T Consensus         2 p~IvliG~~G~GKSTig~~La~~   24 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAKA   24 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHH
Confidence            68999999999999999999765

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.84  E-value=0.00029  Score=55.63  Aligned_cols=23  Identities=30%  Similarity=0.507  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      -.++++|++|||||||++.+.|-
T Consensus        27 ei~~liGpsGsGKSTLl~~i~Gl   49 (232)
T d2awna2          27 EFVVFVGPSGCGKSTLLRMIAGL   49 (232)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCChHHHHHHHHhcC
Confidence            36999999999999999999986

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.83  E-value=0.00028  Score=54.69  Aligned_cols=38  Identities=21%  Similarity=0.191  Sum_probs=26.4

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcCc-cccCCCCCceeE
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWGV-VRTSDKPGLTQT  130 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~~-~~~s~~~gtt~~  130 (269)
                      ..|+++|++|||||||++.|+..... .....++-|||.
T Consensus         3 ~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~   41 (205)
T d1s96a_           3 TLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQ   41 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCCccCceEEEEEeccC
Confidence            36889999999999999999876321 122234445654

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=96.82  E-value=0.00026  Score=53.88  Aligned_cols=25  Identities=16%  Similarity=0.278  Sum_probs=22.2

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCc
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      .++|+++|+|||||||+...|....
T Consensus         3 ~~riil~G~pGSGKsT~a~~La~~~   27 (190)
T d1ak2a1           3 GVRAVLLGPPGAGKGTQAPKLAKNF   27 (190)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHh
Confidence            5689999999999999999998763

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.82  E-value=0.0002  Score=54.77  Aligned_cols=21  Identities=33%  Similarity=0.642  Sum_probs=19.4

Q ss_pred             EEEEcCCCCChHHHHHHHhcC
Q 024325           95 IAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        95 v~ivG~~~~GKSsLin~l~~~  115 (269)
                      |+|+|++|||||||.+.|...
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999765

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.79  E-value=0.00031  Score=57.22  Aligned_cols=25  Identities=24%  Similarity=0.343  Sum_probs=22.3

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCc
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      .-.++++|++|||||||++.|+|..
T Consensus        62 Ge~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          62 GEMLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCChHHHHHHHHhCCC
Confidence            3479999999999999999999864

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.78  E-value=0.00069  Score=51.84  Aligned_cols=23  Identities=22%  Similarity=0.517  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .+++++|+||+|||+++..|...
T Consensus        44 ~n~lLvG~pGVGKTalv~~LA~r   66 (195)
T d1jbka_          44 NNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEecCCcccHHHHHHHHHH
Confidence            37899999999999999988865

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.75  E-value=0.00037  Score=55.23  Aligned_cols=24  Identities=21%  Similarity=0.278  Sum_probs=21.6

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      -.++++|++|||||||++.+.|-.
T Consensus        33 e~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          33 EFLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCChHHHHHHHHHcCC
Confidence            369999999999999999999863

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.74  E-value=0.00048  Score=51.16  Aligned_cols=25  Identities=28%  Similarity=0.275  Sum_probs=21.7

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcC
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .+..|.++|.|||||||+-++|...
T Consensus         5 ~g~~I~l~G~~GsGKTTia~~La~~   29 (183)
T d1m8pa3           5 QGFTIFLTGYMNSGKDAIARALQVT   29 (183)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4568899999999999999988765

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.71  E-value=0.0021  Score=51.01  Aligned_cols=23  Identities=13%  Similarity=0.398  Sum_probs=20.9

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..|.+.|+||+|||+|.+++.+.
T Consensus        41 ~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          41 VSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHhhc
Confidence            35999999999999999999876

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=96.71  E-value=0.0004  Score=55.20  Aligned_cols=24  Identities=21%  Similarity=0.378  Sum_probs=21.8

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      -.++++|+.|||||||++.++|-.
T Consensus        33 ei~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          33 QIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            369999999999999999999873

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.70  E-value=0.00052  Score=51.90  Aligned_cols=25  Identities=24%  Similarity=0.383  Sum_probs=21.3

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcC
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      +...|+|.|.+|||||||.+.|...
T Consensus        21 ~~~iIgI~G~~GSGKSTla~~L~~~   45 (198)
T d1rz3a_          21 GRLVLGIDGLSRSGKTTLANQLSQT   45 (198)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3457889999999999999998753

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=96.70  E-value=0.0004  Score=51.30  Aligned_cols=22  Identities=32%  Similarity=0.398  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .|+++|+|||||||+.+.|...
T Consensus         4 lI~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999875

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.70  E-value=0.00043  Score=52.81  Aligned_cols=26  Identities=23%  Similarity=0.434  Sum_probs=23.1

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCc
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      ...+|+++|+|||||||+...|....
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred             cceeEEEECCCCCCHHHHHHHHHHHH
Confidence            35689999999999999999999864

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.68  E-value=0.00044  Score=54.83  Aligned_cols=23  Identities=22%  Similarity=0.280  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCc
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      .++++|++|||||||++.|.|-.
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            69999999999999999999863

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.68  E-value=0.00033  Score=52.63  Aligned_cols=23  Identities=13%  Similarity=0.385  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCc
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      +|+++|+|||||||+...|....
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999997764

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.66  E-value=0.00036  Score=52.04  Aligned_cols=22  Identities=18%  Similarity=0.487  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .|.++|++|+|||||+..+...
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~   24 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            5899999999999999998754

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.66  E-value=0.00042  Score=54.85  Aligned_cols=23  Identities=22%  Similarity=0.277  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCc
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      .++++|+.|||||||++.|.|-.
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            57899999999999999999863

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=96.65  E-value=0.00033  Score=55.35  Aligned_cols=23  Identities=22%  Similarity=0.418  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      =.++++|+.|||||||++.|+|-
T Consensus        26 ei~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          26 EILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             CEEECBCCTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Confidence            37999999999999999999985

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.64  E-value=0.00046  Score=54.71  Aligned_cols=24  Identities=21%  Similarity=0.266  Sum_probs=21.7

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      -.++++|++|||||||++.|.|-.
T Consensus        32 e~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          32 QIYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             CEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHcCCc
Confidence            379999999999999999999863

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.64  E-value=0.00033  Score=56.18  Aligned_cols=24  Identities=38%  Similarity=0.653  Sum_probs=21.8

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      -.|+++|++|||||||++.|.|-.
T Consensus        45 e~vaivG~sGsGKSTLl~ll~gl~   68 (255)
T d2hyda1          45 ETVAFVGMSGGGKSTLINLIPRFY   68 (255)
T ss_dssp             CEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHhcC
Confidence            479999999999999999999864

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.64  E-value=0.0003  Score=55.36  Aligned_cols=23  Identities=17%  Similarity=0.283  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCc
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      .++++|++|||||||++.|.|-.
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Confidence            69999999999999999999863

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=96.63  E-value=0.00049  Score=54.57  Aligned_cols=24  Identities=17%  Similarity=0.321  Sum_probs=21.9

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      -.++++|+.|||||||++.|.|..
T Consensus        29 ei~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          29 EIFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            369999999999999999999973

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.58  E-value=0.00068  Score=50.12  Aligned_cols=25  Identities=28%  Similarity=0.348  Sum_probs=21.5

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcC
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ....++++|++||||||+.+.|...
T Consensus         5 ~~~iivl~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_           5 DHHIYVLMGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3456888999999999999999875

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.56  E-value=0.00059  Score=51.00  Aligned_cols=22  Identities=14%  Similarity=0.231  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .|+|.|.+||||||+++.|...
T Consensus         3 iI~i~G~~GsGKsT~~~~L~~~   24 (190)
T d1khta_           3 VVVVTGVPGVGSTTSSQLAMDN   24 (190)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998753

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.54  E-value=0.003  Score=50.42  Aligned_cols=23  Identities=17%  Similarity=0.390  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..+.+.|+||+|||++++++...
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEeeCCCCCCccHHHHHHHHH
Confidence            46999999999999999999976

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.53  E-value=0.00062  Score=54.54  Aligned_cols=24  Identities=25%  Similarity=0.360  Sum_probs=21.8

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      -.++++|+.|||||||++.|+|-.
T Consensus        31 ei~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          31 DVTLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHCCC
Confidence            369999999999999999999973

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.52  E-value=0.0044  Score=48.03  Aligned_cols=66  Identities=12%  Similarity=0.082  Sum_probs=41.3

Q ss_pred             CcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcchHHHHHHHHhhCCcEE-EEEecCCCC
Q 024325          138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ-VVLTKTDTV  216 (269)
Q Consensus       138 ~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~i-iv~NK~Dl~  216 (269)
                      +.+.++|+|+-...               .....+..+|.+++++.+...--....+++..+.+.+.|++ +|+||.|..
T Consensus       112 ~d~IiiD~~~~~~~---------------~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~giv~N~~~~~  176 (237)
T d1g3qa_         112 FDFILIDCPAGLQL---------------DAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRS  176 (237)
T ss_dssp             CSEEEEECCSSSSH---------------HHHHHHTTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSC
T ss_pred             CCEEEEcccccccc---------------cchhhhhhhhcccccccccceecchhhHHHHHHhhhhhhhhhhhhcccccc
Confidence            34899999875321               01111223899999997652111223456677777788876 899999876


Q ss_pred             Cc
Q 024325          217 FP  218 (269)
Q Consensus       217 ~~  218 (269)
                      ..
T Consensus       177 ~~  178 (237)
T d1g3qa_         177 DR  178 (237)
T ss_dssp             TT
T ss_pred             cc
Confidence            53

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.50  E-value=0.00065  Score=54.47  Aligned_cols=24  Identities=29%  Similarity=0.346  Sum_probs=21.7

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      =.++++|++|||||||++.|.|-.
T Consensus        29 Ei~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          29 DVISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCc
Confidence            379999999999999999999863

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.48  E-value=0.00063  Score=51.84  Aligned_cols=25  Identities=16%  Similarity=0.288  Sum_probs=22.1

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCc
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      .+.|.++|+|||||||+...|...+
T Consensus         8 ~~iI~l~G~pGSGKsT~a~~La~~~   32 (194)
T d3adka_           8 SKIIFVVGGPGSGKGTQCEKIVQKY   32 (194)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            3579999999999999999998764

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.00072  Score=51.35  Aligned_cols=24  Identities=13%  Similarity=0.267  Sum_probs=21.6

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      +.|+|+|+|||||||....|....
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~~~   25 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            689999999999999999998754

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.47  E-value=0.00054  Score=51.57  Aligned_cols=23  Identities=17%  Similarity=0.326  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCc
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      +|+++|+|||||||+.+.|....
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            79999999999999999998764

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=96.47  E-value=0.00074  Score=49.15  Aligned_cols=22  Identities=32%  Similarity=0.456  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .|+++|++||||||+...|...
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999876

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.43  E-value=0.00058  Score=51.28  Aligned_cols=23  Identities=17%  Similarity=0.361  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCc
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      +|+++|+|||||||..+.|....
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~   24 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKY   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999998653

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.41  E-value=0.00091  Score=49.52  Aligned_cols=23  Identities=26%  Similarity=0.429  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      -.|++.|+|||||||+.+.|...
T Consensus         5 ~iI~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           5 NILLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            35889999999999999999876

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.40  E-value=0.0009  Score=50.36  Aligned_cols=23  Identities=17%  Similarity=0.458  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCc
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      +|+|+|+|||||||+...|....
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999998764

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.37  E-value=0.00043  Score=54.92  Aligned_cols=23  Identities=17%  Similarity=0.394  Sum_probs=21.4

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      =.++++|++|||||||++.|.+-
T Consensus        32 e~~~iiG~sGsGKSTll~~i~gl   54 (242)
T d1oxxk2          32 ERFGILGPSGAGKTTFMRIIAGL   54 (242)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcC
Confidence            37999999999999999999986

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.35  E-value=0.00067  Score=52.44  Aligned_cols=26  Identities=27%  Similarity=0.466  Sum_probs=22.8

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQWG  117 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~~  117 (269)
                      .|.|+|.|+|||||||+-..|..+.+
T Consensus         3 ~piI~I~GppGSGKgT~ak~La~~~g   28 (225)
T d1ckea_           3 APVITIDGPSGAGKGTLCKAMAEALQ   28 (225)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            37899999999999999999987654

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.34  E-value=0.0011  Score=49.01  Aligned_cols=22  Identities=32%  Similarity=0.478  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .|+|.|.+||||||+.++|...
T Consensus         5 iI~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           5 MIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6888899999999999999876

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.32  E-value=0.0012  Score=49.63  Aligned_cols=24  Identities=17%  Similarity=0.362  Sum_probs=21.4

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      .+|+|+|+|||||||+...|....
T Consensus         3 mrIvl~G~pGSGKtT~a~~La~~~   26 (180)
T d1akya1           3 IRMVLIGPPGAGKGTQAPNLQERF   26 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            579999999999999999998763

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.32  E-value=0.00099  Score=52.36  Aligned_cols=25  Identities=16%  Similarity=0.457  Sum_probs=22.3

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcC
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..+.+.+.|+||+||||+.+++.+.
T Consensus        34 ~~~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          34 PLEHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            3567999999999999999999875

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.29  E-value=0.00067  Score=51.24  Aligned_cols=25  Identities=24%  Similarity=0.220  Sum_probs=21.3

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcC
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ....|.++|.|||||||+-+.|...
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~   42 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEY   42 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3457889999999999999999764

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.28  E-value=0.0033  Score=53.20  Aligned_cols=22  Identities=23%  Similarity=0.554  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ++++||+||+|||+++..|...
T Consensus        45 n~llvG~~GvGKtaiv~~la~~   66 (387)
T d1qvra2          45 NPVLIGEPGVGKTAIVEGLAQR   66 (387)
T ss_dssp             CCEEEECTTSCHHHHHHHHHHH
T ss_pred             CCeEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999887764

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.27  E-value=0.003  Score=49.78  Aligned_cols=26  Identities=12%  Similarity=0.271  Sum_probs=23.1

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcC
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ...+.+++.|+||+||||++.++++.
T Consensus        50 ~~~~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          50 GVFRAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             TSCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHH
Confidence            44578999999999999999999986

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.0013  Score=50.74  Aligned_cols=24  Identities=25%  Similarity=0.264  Sum_probs=20.8

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .+.|+|.|.+|||||||.+.|...
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~~   25 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQL   25 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999988654

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.19  E-value=0.0014  Score=52.06  Aligned_cols=22  Identities=23%  Similarity=0.480  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .|++.|+||+|||+|.+++.+.
T Consensus        44 giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEecCCCCChhHHHHHHHHH
Confidence            5999999999999999999976

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.19  E-value=0.001  Score=55.06  Aligned_cols=22  Identities=14%  Similarity=0.419  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      +|++.|.+|||||||+|+|++.
T Consensus       168 nili~G~tgSGKTT~l~al~~~  189 (323)
T d1g6oa_         168 NVIVCGGTGSGKTTYIKSIMEF  189 (323)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGG
T ss_pred             CEEEEeeccccchHHHHHHhhh
Confidence            5999999999999999999975

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.08  E-value=0.0014  Score=48.45  Aligned_cols=22  Identities=36%  Similarity=0.585  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      +|+++|.|||||||+-+.|...
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~   23 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKD   23 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999876

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.05  E-value=0.0017  Score=50.93  Aligned_cols=24  Identities=21%  Similarity=0.529  Sum_probs=21.6

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .|.+.|.|+||+||||+.+.|...
T Consensus        35 ~~~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          35 LDHVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHhc
Confidence            467999999999999999999875

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=95.94  E-value=0.0018  Score=48.35  Aligned_cols=22  Identities=27%  Similarity=0.303  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .|+|.|.+||||||+++.|...
T Consensus         3 iivi~G~~GsGKTT~~~~La~~   24 (194)
T d1nksa_           3 IGIVTGIPGVGKSTVLAKVKEI   24 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4678899999999999999754

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.93  E-value=0.0024  Score=50.70  Aligned_cols=22  Identities=23%  Similarity=0.460  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      -|++.|+||+|||||..+|.+.
T Consensus        34 ~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          34 AFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             EEEEECCTTSCTHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4889999999999999999876

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.83  E-value=0.0027  Score=48.97  Aligned_cols=26  Identities=31%  Similarity=0.272  Sum_probs=22.2

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhcC
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .....|.|.|.||||||||.+.|...
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~~   47 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEHQ   47 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34568999999999999999998754

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=95.78  E-value=0.0024  Score=47.38  Aligned_cols=22  Identities=23%  Similarity=0.363  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .|+++|.+||||||+-+.|...
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~   25 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARA   25 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4788999999999999999765

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=95.78  E-value=0.0032  Score=49.77  Aligned_cols=25  Identities=28%  Similarity=0.454  Sum_probs=21.8

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcC
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ....++|.|+||+||||+++.+...
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHH
Confidence            3458999999999999999998864

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.77  E-value=0.0026  Score=48.13  Aligned_cols=24  Identities=21%  Similarity=0.331  Sum_probs=21.5

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ...|+|-|..||||||+++.|...
T Consensus         9 p~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1           9 PFTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            347999999999999999999876

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.67  E-value=0.0033  Score=48.90  Aligned_cols=24  Identities=42%  Similarity=0.736  Sum_probs=21.4

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .|.+.+.|+||+||||++..+...
T Consensus        45 ~~~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          45 MPHLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            467999999999999999998875

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=95.63  E-value=0.0026  Score=49.11  Aligned_cols=25  Identities=28%  Similarity=0.587  Sum_probs=21.8

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQWG  117 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~~  117 (269)
                      +.|+|-|+|||||||+...|.....
T Consensus         4 i~IaIdGp~GsGKgT~ak~La~~lg   28 (223)
T d1q3ta_           4 IQIAIDGPASSGKSTVAKIIAKDFG   28 (223)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            5788999999999999999987653

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=95.50  E-value=0.004  Score=46.95  Aligned_cols=23  Identities=26%  Similarity=0.277  Sum_probs=20.1

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhc
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTR  114 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~  114 (269)
                      ...|++.|.+||||||+.+.|..
T Consensus         3 p~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999998864

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.46  E-value=0.0044  Score=48.18  Aligned_cols=24  Identities=42%  Similarity=0.703  Sum_probs=21.0

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .|.+.+.|++|+||||++.+++..
T Consensus        33 ~~~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          33 LPHMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCChHHHHHHHHHH
Confidence            356999999999999999998864

>d1xzpa1 a.24.25.1 (A:118-211,A:372-450) TrmE connector domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: TrmE connector domain
family: TrmE connector domain
domain: TrmE connector domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.31  E-value=3.9e-06  Score=63.93  Aligned_cols=109  Identities=18%  Similarity=0.128  Sum_probs=59.6

Q ss_pred             hhhhhhhcCCCchhhHHHHHhcCCCcceeeeeccccccccCCCCCCCCCCChhhhhhhhhhhhchhhhHHHhhhccCCCC
Q 024325            9 KNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFP   88 (269)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~   88 (269)
                      ..+...+++...+.+......|  +..++.... .+|+.+|||+|..+ ....-...+ +.+.......+...+....+.
T Consensus        18 ~~~~~~A~~~l~G~ls~~i~~i--r~~L~~l~a-~iEa~iDf~ee~~~-~~~~~~~~l-~~i~~~l~~li~~~~~g~~l~   92 (173)
T d1xzpa1          18 ETSLKLSLRNLKGGLRDFVDSL--RRELIEVLA-EIRVELDYPDEIET-NTGEVVTRL-ERIKEKLTEELKKADAGILLN   92 (173)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHH--HHHHHHHHH-HHHHHHHSTTTCCC-CHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCchhHHHHHH--HHHHHHHHH-HHHHhcCCcccccc-cHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence            3344445555556666666666  556666666 78899999987522 211111111 112111122222221111010


Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEee
Q 024325           89 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN  132 (269)
Q Consensus        89 ~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~  132 (269)
                        ..     ++.+|+|||||+|.+.+.   +.+++.+++|++..
T Consensus        93 --~g-----~~vvn~Gkssl~n~~r~~---~~v~~~~~t~~d~i  126 (173)
T d1xzpa1          93 --RG-----QEIFERGSDSLITNLRQK---QLLENVKGHLEDAI  126 (173)
T ss_dssp             --HC-----HHHHHHHTTCSCCSHHHH---HHHHHHHHHHHHHH
T ss_pred             --hh-----hcccccccchhhcchhhH---HHHHHHHHHHHHHH
Confidence              01     122499999999999865   67888888988864

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.22  E-value=0.11  Score=39.58  Aligned_cols=43  Identities=19%  Similarity=0.176  Sum_probs=25.4

Q ss_pred             cceEEEEEeCCCCCCcchHHHHHHHHhhCCcEE-EEEecCCCCC
Q 024325          175 LKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ-VVLTKTDTVF  217 (269)
Q Consensus       175 ~d~vl~vid~~~~~~~~~~~~~~~l~~~~~p~i-iv~NK~Dl~~  217 (269)
                      +|.+++|+.+...-.......+..+...+.+.+ +|+|+.+...
T Consensus       132 ad~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~  175 (232)
T d1hyqa_         132 AQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTLG  175 (232)
T ss_dssp             SSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECTTT
T ss_pred             hheeeeeccccccchhhhhhhhhhhhhccccccccccccccccc
Confidence            788888887642111111344455566677654 7899987543

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.22  E-value=0.0034  Score=49.87  Aligned_cols=22  Identities=18%  Similarity=0.351  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .+.+.|+||+|||++++++...
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHH
Confidence            3456799999999999998865

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.16  E-value=0.0056  Score=47.34  Aligned_cols=24  Identities=21%  Similarity=0.628  Sum_probs=20.7

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .|.+.+.|++|+||||+.+.+...
T Consensus        36 ~~~~ll~Gp~G~GKTt~a~~la~~   59 (224)
T d1sxjb2          36 MPHMIISGMPGIGKTTSVHCLAHE   59 (224)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCchhhHHHHHHH
Confidence            457999999999999999988754

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.12  E-value=0.0058  Score=47.27  Aligned_cols=24  Identities=42%  Similarity=0.720  Sum_probs=21.2

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .|.+.+.|++|+||||++.+++..
T Consensus        35 ~~~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          35 LPHLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CCCEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCChhHHHHHHHHH
Confidence            456899999999999999999865

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.98  E-value=0.0046  Score=50.05  Aligned_cols=23  Identities=26%  Similarity=0.481  Sum_probs=17.5

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhc
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTR  114 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~  114 (269)
                      .|.|+|.|.+||||||+.++|..
T Consensus         4 ~pIIgIaG~SGSGKTTva~~l~~   26 (288)
T d1a7ja_           4 HPIISVTGSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             SCEEEEESCC---CCTHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHHH
Confidence            47899999999999999998754

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=94.96  E-value=0.0067  Score=47.82  Aligned_cols=23  Identities=26%  Similarity=0.335  Sum_probs=20.0

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..|++.|++|+|||||++.++..
T Consensus        30 ~~i~i~G~~G~GKTsLl~~~~~~   52 (283)
T d2fnaa2          30 PITLVLGLRRTGKSSIIKIGINE   52 (283)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCcHHHHHHHHHHH
Confidence            36889999999999999988754

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.89  E-value=0.0069  Score=47.45  Aligned_cols=25  Identities=32%  Similarity=0.492  Sum_probs=21.4

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcC
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..|.+.+.|++|+||||++.++...
T Consensus        32 ~~~~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          32 DLPHLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHh
Confidence            3467999999999999999988764

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=94.87  E-value=0.0061  Score=49.91  Aligned_cols=23  Identities=26%  Similarity=0.481  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..++++||||+|||.|.++|.+.
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhhc
Confidence            35899999999999999999875

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=94.73  E-value=0.009  Score=48.79  Aligned_cols=25  Identities=32%  Similarity=0.264  Sum_probs=21.2

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHhc
Q 024325           90 PDLPEIAFAGRSNVGKSSMLNALTR  114 (269)
Q Consensus        90 ~~~~~v~ivG~~~~GKSsLin~l~~  114 (269)
                      ...+.|+|.|.+||||||+.+.|..
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHHH
Confidence            4557899999999999999888754

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.65  E-value=0.011  Score=47.02  Aligned_cols=22  Identities=23%  Similarity=0.394  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      -|.+.|+||+|||+|++++.+.
T Consensus        40 giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          40 GILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eeEEecCCCCCchHHHHHHHHH
Confidence            5999999999999999999986

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=94.46  E-value=0.036  Score=40.42  Aligned_cols=25  Identities=12%  Similarity=0.226  Sum_probs=21.5

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcCc
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      .-.|++-|.-|||||||++.++...
T Consensus        33 g~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          33 AIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CeEEEEecCCCccHHHHHHHHHhhc
Confidence            3478999999999999999988753

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.45  E-value=0.0094  Score=45.24  Aligned_cols=22  Identities=27%  Similarity=0.466  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      -|+|-|..||||||+++.|...
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~   23 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGA   23 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999988764

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=94.39  E-value=0.012  Score=44.91  Aligned_cols=22  Identities=23%  Similarity=0.372  Sum_probs=19.7

Q ss_pred             cEEEEEcCCCCChHHHHHHHhc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTR  114 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~  114 (269)
                      ..|+++|.+||||||+.+.|..
T Consensus         3 ~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998864

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=94.26  E-value=0.012  Score=45.11  Aligned_cols=23  Identities=30%  Similarity=0.382  Sum_probs=20.1

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      +.|+++|.+||||||..+.|...
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEEECCCcCCHHHHHHHHHHC
Confidence            47999999999999999988644

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=94.25  E-value=0.0023  Score=48.15  Aligned_cols=20  Identities=25%  Similarity=0.468  Sum_probs=17.3

Q ss_pred             EEEEEcCCCCChHHHHHHHh
Q 024325           94 EIAFAGRSNVGKSSMLNALT  113 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~  113 (269)
                      ..+|+|+.||||||++.+|.
T Consensus        26 ~tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            35778999999999999964

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.24  E-value=0.06  Score=40.91  Aligned_cols=21  Identities=19%  Similarity=0.455  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 024325           94 EIAFAGRSNVGKSSMLNALTR  114 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~  114 (269)
                      .+.+.|++|+||||+...+..
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            489999999999999987665

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.24  E-value=0.015  Score=46.83  Aligned_cols=22  Identities=27%  Similarity=0.169  Sum_probs=19.0

Q ss_pred             CcEEEEEcCCCCChHHHHHHHh
Q 024325           92 LPEIAFAGRSNVGKSSMLNALT  113 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~  113 (269)
                      ...|+|.|.+|||||||...|.
T Consensus        27 P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          27 PLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHH
T ss_pred             CEEEEeECCCCCCHHHHHHHHH
Confidence            4688999999999999987764

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.08  E-value=0.029  Score=45.82  Aligned_cols=24  Identities=29%  Similarity=0.529  Sum_probs=20.5

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ...++++|++|+|||.|..+|...
T Consensus        52 ~~~~lf~Gp~GvGKT~lak~la~~   75 (315)
T d1r6bx3          52 VGSFLFAGPTGVGKTEVTVQLSKA   75 (315)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCcchhHHHHHHHHhh
Confidence            347999999999999999988754

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.04  E-value=0.011  Score=45.71  Aligned_cols=23  Identities=30%  Similarity=0.515  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..|+|-|..||||||+++.|...
T Consensus         3 k~I~ieG~dGsGKST~~~~L~~~   25 (241)
T d1p5zb_           3 KKISIEGNIAAGKSTFVNILKQL   25 (241)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999998875

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=93.81  E-value=0.018  Score=48.02  Aligned_cols=23  Identities=26%  Similarity=0.336  Sum_probs=20.9

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..+++.|+||+|||++.++|.+.
T Consensus       155 ~~~~~~g~~~~gk~~~~~~~~~~  177 (362)
T d1svma_         155 RYWLFKGPIDSGKTTLAAALLEL  177 (362)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999998875

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.78  E-value=0.018  Score=45.92  Aligned_cols=24  Identities=21%  Similarity=0.421  Sum_probs=21.6

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcCc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      ..|.+.|+||+|||+|++++.+..
T Consensus        42 ~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          42 KGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCcchhHHHHHHHHh
Confidence            369999999999999999999873

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=93.78  E-value=0.014  Score=43.49  Aligned_cols=23  Identities=30%  Similarity=0.449  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .-|+|.|++|+|||||.-.|...
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~   38 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINK   38 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHc
Confidence            35899999999999999998876

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.76  E-value=0.29  Score=38.63  Aligned_cols=22  Identities=18%  Similarity=0.205  Sum_probs=18.0

Q ss_pred             cEEEEEcCCCCChHHHHHHHhc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTR  114 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~  114 (269)
                      -.+.+.|++++|||+|.-.++.
T Consensus        61 ~i~e~~G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          61 RVIEIYGPESSGKTTVALHAVA   82 (269)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHH
T ss_pred             eeEEEecCCCcHHHHHHHHHHH
Confidence            4689999999999999755543

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=93.75  E-value=0.014  Score=43.55  Aligned_cols=23  Identities=30%  Similarity=0.394  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .-|+|.|++|+|||||.-.|...
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~   37 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQR   37 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHc
Confidence            35899999999999999888876

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=93.65  E-value=0.015  Score=49.23  Aligned_cols=22  Identities=32%  Similarity=0.347  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .|.+.|++|+||||.+.+++..
T Consensus       160 liLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         160 IILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEcCCCCCccHHHHHHhhh
Confidence            6999999999999999998875

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.58  E-value=0.013  Score=47.21  Aligned_cols=19  Identities=32%  Similarity=0.573  Sum_probs=17.3

Q ss_pred             EEEEEcCCCCChHHHHHHH
Q 024325           94 EIAFAGRSNVGKSSMLNAL  112 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l  112 (269)
                      .-+++|+.||||||++.+|
T Consensus        26 lnvlvG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          26 VTAIVGPNGSGKSNIIDAI   44 (308)
T ss_dssp             EEEEECCTTTCSTHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHH
Confidence            4689999999999999987

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=93.57  E-value=0.018  Score=43.88  Aligned_cols=22  Identities=23%  Similarity=0.357  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      -|+|-|..||||||+++.|...
T Consensus         4 fIviEG~dGsGKsT~~~~L~~~   25 (210)
T d4tmka_           4 YIVIEGLEGAGKTTARNVVVET   25 (210)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4889999999999999988753

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=93.53  E-value=0.019  Score=42.49  Aligned_cols=23  Identities=26%  Similarity=0.406  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .-|+|.|++|+|||||.-.|...
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHc
Confidence            46999999999999999888776

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.36  E-value=0.023  Score=42.66  Aligned_cols=23  Identities=17%  Similarity=0.260  Sum_probs=19.6

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      -.+.|.|+||+|||+|...++..
T Consensus        24 ~v~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          24 SITEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHH
Confidence            37999999999999999877654

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.16  E-value=0.02  Score=48.06  Aligned_cols=19  Identities=32%  Similarity=0.625  Sum_probs=17.0

Q ss_pred             EEEEcCCCCChHHHHHHHh
Q 024325           95 IAFAGRSNVGKSSMLNALT  113 (269)
Q Consensus        95 v~ivG~~~~GKSsLin~l~  113 (269)
                      -+|+|+.|+||||++.+|.
T Consensus        28 ~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          28 TSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5788999999999999973

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.15  E-value=0.03  Score=42.82  Aligned_cols=23  Identities=26%  Similarity=0.343  Sum_probs=19.4

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .-|+|-|..||||||+++.|...
T Consensus         4 ~lI~ieG~dGsGKsT~~~~L~~~   26 (209)
T d1nn5a_           4 ALIVLEGVDRAGKSTQSRKLVEA   26 (209)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            35888899999999998887654

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.13  E-value=0.027  Score=43.67  Aligned_cols=23  Identities=30%  Similarity=0.556  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .-|+|=|..||||||+++.|...
T Consensus         3 k~IviEG~~GsGKST~~~~L~~~   25 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHH
Confidence            36899999999999999999864

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=93.06  E-value=0.019  Score=43.70  Aligned_cols=23  Identities=26%  Similarity=0.330  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      -.+++.|++|+|||++.++|++-
T Consensus        54 n~i~~~GP~~TGKS~f~~sl~~~   76 (205)
T d1tuea_          54 NCLVFCGPANTGKSYFGMSFIHF   76 (205)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHHHHH
Confidence            36999999999999999988764

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=93.01  E-value=0.026  Score=43.76  Aligned_cols=23  Identities=17%  Similarity=0.330  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCc
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQW  116 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~~  116 (269)
                      .|++.|..||||||..+.|...+
T Consensus         3 iIgiTG~igSGKsTva~~l~e~~   25 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMSNY   25 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            68999999999999999997653

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=92.88  E-value=0.021  Score=48.98  Aligned_cols=23  Identities=26%  Similarity=0.481  Sum_probs=20.9

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .+|+++||||+|||-|.++|.+.
T Consensus        50 sNILliGPTGvGKTlLAr~LAk~   72 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRLAKL   72 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ccEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999864

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.85  E-value=0.03  Score=42.95  Aligned_cols=21  Identities=29%  Similarity=0.430  Sum_probs=19.7

Q ss_pred             EEEEcCCCCChHHHHHHHhcC
Q 024325           95 IAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        95 v~ivG~~~~GKSsLin~l~~~  115 (269)
                      +.+.|++|+|||.|+++++..
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999999876

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.98  E-value=0.042  Score=42.13  Aligned_cols=23  Identities=22%  Similarity=0.280  Sum_probs=19.6

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      -.+.|.|+||+|||+|...+.-.
T Consensus        35 ~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          35 SITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             SEEEEEESTTSSHHHHHHHHTTT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            36999999999999999877644

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=91.82  E-value=0.023  Score=46.63  Aligned_cols=21  Identities=29%  Similarity=0.425  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 024325           94 EIAFAGRSNVGKSSMLNALTR  114 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~  114 (269)
                      .|.+.|+||+|||+|.+++.+
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            599999999999999998864

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=91.45  E-value=0.06  Score=44.80  Aligned_cols=23  Identities=26%  Similarity=0.446  Sum_probs=20.3

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhc
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTR  114 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~  114 (269)
                      ..++.++|+||+|||-|.++|..
T Consensus        68 ~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          68 KSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CcceeeeCCCCccHHHHHHHHHh
Confidence            45799999999999999998864

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=91.14  E-value=0.056  Score=44.13  Aligned_cols=22  Identities=27%  Similarity=0.554  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .+++.|+||+|||.|.++|.+.
T Consensus       125 ~~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHHH
Confidence            3556799999999999999876

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.11  E-value=0.061  Score=41.53  Aligned_cols=23  Identities=17%  Similarity=0.218  Sum_probs=19.1

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      -.+.|.|+||+|||+|.-.++..
T Consensus        37 ~~~li~G~pGsGKT~~~lq~~~~   59 (254)
T d1pzna2          37 AITEVFGEFGSGKTQLAHTLAVM   59 (254)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHH
Confidence            36999999999999998766543

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=90.82  E-value=0.063  Score=42.39  Aligned_cols=20  Identities=25%  Similarity=0.363  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCChHHHHHHHh
Q 024325           94 EIAFAGRSNVGKSSMLNALT  113 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~  113 (269)
                      .+++.|+||+|||||+..+.
T Consensus        37 l~vi~G~~G~GKT~~~~~la   56 (277)
T d1cr2a_          37 VIMVTSGSGMGKSTFVRQQA   56 (277)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            58899999999999986655

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=90.81  E-value=0.13  Score=41.78  Aligned_cols=21  Identities=29%  Similarity=0.561  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 024325           94 EIAFAGRSNVGKSSMLNALTR  114 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~  114 (269)
                      .++++|++|+|||.|.+.|..
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHH
Confidence            678999999999999988764

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=90.77  E-value=0.061  Score=42.73  Aligned_cols=23  Identities=22%  Similarity=0.395  Sum_probs=20.0

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      -.+.+.|++++|||+|+++|...
T Consensus       105 n~~~l~G~~~tGKS~f~~~i~~~  127 (267)
T d1u0ja_         105 NTIWLFGPATTGKTNIAEAIAHT  127 (267)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHH
Confidence            36899999999999999987754

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=90.70  E-value=0.075  Score=42.29  Aligned_cols=23  Identities=22%  Similarity=0.257  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..|++.|..|.|||||...+++.
T Consensus        45 ~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          45 FFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            47899999999999999998764

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=90.63  E-value=0.058  Score=44.28  Aligned_cols=24  Identities=17%  Similarity=0.353  Sum_probs=21.5

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..+|+|=|.-|+||||+++.|...
T Consensus         5 ~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           5 VLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999999875

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=90.57  E-value=0.074  Score=41.22  Aligned_cols=22  Identities=32%  Similarity=0.552  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 024325           94 EIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .+.+.|++|+||||+...+...
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~~   57 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAKG   57 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4889999999999999887653

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=90.57  E-value=0.073  Score=40.95  Aligned_cols=23  Identities=17%  Similarity=0.348  Sum_probs=19.4

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      -.+.+.|+||+|||+|...+...
T Consensus        27 sl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          27 SIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHH
Confidence            36899999999999999776654

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.51  E-value=0.086  Score=40.17  Aligned_cols=23  Identities=26%  Similarity=0.366  Sum_probs=20.1

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .-|+|-|.-||||||+++.|...
T Consensus         4 k~I~iEG~DGsGKST~~~~L~~~   26 (214)
T d1tmka_           4 KLILIEGLDRTGKTTQCNILYKK   26 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCcHHHHHHHHHHH
Confidence            45899999999999999988754

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.43  E-value=0.065  Score=37.03  Aligned_cols=25  Identities=16%  Similarity=0.106  Sum_probs=22.0

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcC
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..+.|.+.|..|+|||||-++|...
T Consensus         5 qgf~i~~tg~~~~gk~~ia~al~~~   29 (122)
T d1g8fa3           5 QGFSIVLGNSLTVSREQLSIALLST   29 (122)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHHH
T ss_pred             cceEEEEeCCCCCCHHHHHHHHHHH
Confidence            4578999999999999999998654

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=90.39  E-value=0.078  Score=40.54  Aligned_cols=22  Identities=23%  Similarity=0.330  Sum_probs=18.8

Q ss_pred             cEEEEEcCCCCChHHHHHHHhc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTR  114 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~  114 (269)
                      -.+.|.|+||+|||+|...++-
T Consensus        35 ~l~~i~G~~G~GKT~~~l~~a~   56 (258)
T d2i1qa2          35 SVTEFAGVFGSGKTQIMHQSCV   56 (258)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHH
Confidence            3689999999999999877654

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=90.38  E-value=0.81  Score=35.88  Aligned_cols=23  Identities=22%  Similarity=0.245  Sum_probs=19.3

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..+-+.|++++|||+|.-.++..
T Consensus        58 ~itei~G~~~sGKT~l~l~~~~~   80 (268)
T d1xp8a1          58 RITEIYGPESGGKTTLALAIVAQ   80 (268)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEecCCccchHHHHHHHHHH
Confidence            36899999999999998776654

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=90.13  E-value=0.086  Score=43.22  Aligned_cols=24  Identities=21%  Similarity=0.321  Sum_probs=21.6

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      ..+|+|=|.-|+||||+++.|...
T Consensus         6 ~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           6 IVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             eEEEEEECCccCCHHHHHHHHHHH
Confidence            358999999999999999999875

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=89.93  E-value=0.07  Score=44.99  Aligned_cols=23  Identities=26%  Similarity=0.432  Sum_probs=19.4

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .+++|+|.+|+|||++++.++..
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~~   73 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAYT   73 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHHH
Confidence            46999999999999998776643

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=89.54  E-value=0.085  Score=43.15  Aligned_cols=23  Identities=17%  Similarity=0.283  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCCChHHHHHHHhcC
Q 024325           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .+|+|=|.-|+||||+++.|...
T Consensus         5 lrI~IEG~iGsGKTTl~~~La~~   27 (329)
T d1e2ka_           5 LRVYIDGPHGMGKTTTTQLLVAL   27 (329)
T ss_dssp             EEEEECSCTTSSHHHHHHHHTC-
T ss_pred             eEEEEECCcCCCHHHHHHHHHHH
Confidence            47999999999999999999764

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=89.27  E-value=1.3  Score=32.91  Aligned_cols=107  Identities=7%  Similarity=0.035  Sum_probs=57.1

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHhcCcCccccCCCCCceeEeeEEEeCCcEEEEcCCCCCCcchhHHHHHHHHHHHHHHHh
Q 024325           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS  170 (269)
Q Consensus        91 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~s~~~gtt~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~  170 (269)
                      ..+.+.+.|++|+|||++...|....   ...+.           .-+.+..+...|-  ...-+.+++    +......
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i---~~~~~-----------~h~D~~~i~~~~~--~I~Id~IR~----i~~~~~~   73 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYV---EKFPP-----------KASDVLEIDPEGE--NIGIDDIRT----IKDFLNY   73 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHH---HTSCC-----------CTTTEEEECCSSS--CBCHHHHHH----HHHHHTS
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHH---hcccc-----------CCCCEEEEeCCcC--CCCHHHHHH----HHHHHhh
Confidence            35799999999999999998887531   11100           0123445554342  122344432    3322222


Q ss_pred             cccccceEEEEEeCCCCCCcch-HHHHHHHHhhC--CcEEEEEecCCCCC
Q 024325          171 TRVSLKRVCLLIDTKWGVKPRD-HELISLMERSQ--TKYQVVLTKTDTVF  217 (269)
Q Consensus       171 ~~~~~d~vl~vid~~~~~~~~~-~~~~~~l~~~~--~p~iiv~NK~Dl~~  217 (269)
                      +......=++++|..+.++... ..+++.+++..  .-++++.|..+.+.
T Consensus        74 ~~~~~~~KviIId~ad~l~~~aqNaLLK~LEEPp~~t~fiLit~~~~~ll  123 (198)
T d2gnoa2          74 SPELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLL  123 (198)
T ss_dssp             CCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSC
T ss_pred             CcccCCCEEEEEeCccccchhhhhHHHHHHhCCCCCceeeeccCChhhCH
Confidence            2222343466666555555443 36677777643  33566666666543

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.20  E-value=0.11  Score=39.83  Aligned_cols=22  Identities=18%  Similarity=0.190  Sum_probs=19.2

Q ss_pred             cEEEEEcCCCCChHHHHHHHhc
Q 024325           93 PEIAFAGRSNVGKSSMLNALTR  114 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~~  114 (269)
                      -.+.|.|+||+|||+|.-.++.
T Consensus        38 ~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          38 AITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             EEEEEECCTTCTHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999977764

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=88.66  E-value=0.13  Score=38.99  Aligned_cols=21  Identities=19%  Similarity=0.226  Sum_probs=17.2

Q ss_pred             cEEEEEcCCCCChHHHHHHHh
Q 024325           93 PEIAFAGRSNVGKSSMLNALT  113 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~  113 (269)
                      -.+.|.|+||+|||+|.-.++
T Consensus        27 ~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          27 RSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             SEEEEEESTTSSHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHH
Confidence            368999999999999975543

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=88.02  E-value=0.14  Score=40.01  Aligned_cols=20  Identities=25%  Similarity=0.204  Sum_probs=17.3

Q ss_pred             EEEEEcCCCCChHHHHHHHh
Q 024325           94 EIAFAGRSNVGKSSMLNALT  113 (269)
Q Consensus        94 ~v~ivG~~~~GKSsLin~l~  113 (269)
                      ..+|+|++|+|||+|+-.|.
T Consensus        31 ~~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          31 VGALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            57799999999999987665

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=87.09  E-value=0.22  Score=39.79  Aligned_cols=15  Identities=20%  Similarity=0.415  Sum_probs=13.0

Q ss_pred             EEEEcCCCCChHHHH
Q 024325           95 IAFAGRSNVGKSSML  109 (269)
Q Consensus        95 v~ivG~~~~GKSsLi  109 (269)
                      +.|.|.+|+||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            778899999999765

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=86.92  E-value=0.12  Score=41.09  Aligned_cols=15  Identities=13%  Similarity=0.271  Sum_probs=13.0

Q ss_pred             EEEEcCCCCChHHHH
Q 024325           95 IAFAGRSNVGKSSML  109 (269)
Q Consensus        95 v~ivG~~~~GKSsLi  109 (269)
                      +.|.|.||+||||.+
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            788899999999754

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=86.83  E-value=0.19  Score=41.51  Aligned_cols=19  Identities=16%  Similarity=0.291  Sum_probs=16.5

Q ss_pred             cEEEEEcCCCCChHHHHHH
Q 024325           93 PEIAFAGRSNVGKSSMLNA  111 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~  111 (269)
                      +.++|.|+||+||||++..
T Consensus       164 ~~~vI~G~pGTGKTt~i~~  182 (359)
T d1w36d1         164 RISVISGGPGTGKTTTVAK  182 (359)
T ss_dssp             SEEEEECCTTSTHHHHHHH
T ss_pred             CeEEEEcCCCCCceehHHH
Confidence            5789999999999998754

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=82.69  E-value=0.35  Score=33.36  Aligned_cols=21  Identities=19%  Similarity=0.165  Sum_probs=16.8

Q ss_pred             cEEEEEcCCCCChHHHHHHHh
Q 024325           93 PEIAFAGRSNVGKSSMLNALT  113 (269)
Q Consensus        93 ~~v~ivG~~~~GKSsLin~l~  113 (269)
                      ....+.+++|+|||+++-.++
T Consensus         9 ~~~ll~apTGsGKT~~~~~~~   29 (136)
T d1a1va1           9 QVAHLHAPTGSGKSTKVPAAY   29 (136)
T ss_dssp             EEEEEECCTTSCTTTHHHHHH
T ss_pred             CEEEEEeCCCCCHHHHHHHHH
Confidence            467889999999999885544

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=81.75  E-value=0.42  Score=38.06  Aligned_cols=24  Identities=13%  Similarity=0.201  Sum_probs=20.7

Q ss_pred             CcEEEEEcCCCCChHHHHHHHhcC
Q 024325           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (269)
Q Consensus        92 ~~~v~ivG~~~~GKSsLin~l~~~  115 (269)
                      .-+++|+|.+|+|||+|+..+...
T Consensus        43 GQr~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          43 GQRGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             TCEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCeeeEeCCCCCCHHHHHHHHHHH
Confidence            448999999999999999887764

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=81.15  E-value=1.8  Score=30.08  Aligned_cols=37  Identities=11%  Similarity=-0.012  Sum_probs=22.2

Q ss_pred             EEEEeCCCCCCcchHHHHHHHHhhCCcEEEEEecCCC
Q 024325          179 CLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDT  215 (269)
Q Consensus       179 l~vid~~~~~~~~~~~~~~~l~~~~~p~iiv~NK~Dl  215 (269)
                      ++.||-.+-++..-.+++..+...++++++..=..|-
T Consensus        82 vI~IDE~QFf~d~i~~~~~~~~~~g~~Viv~GLd~Df  118 (139)
T d2b8ta1          82 VIGIDEVQFFDDRICEVANILAENGFVVIISGLDKNF  118 (139)
T ss_dssp             EEEECSGGGSCTHHHHHHHHHHHTTCEEEEECCSBCT
T ss_pred             EEEechhhhcchhHHHHHHHHHhcCceEEEEEecccc
Confidence            3457765444432345666777778888887655553