Citrus Sinensis ID: 024329

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
Protein Sequence
MTSRVERCSGCGRQLWLPPQAVAARCYACRSVTSFPSSSQRWAQVYGSVSQPHHNVVTIVPSNYVAAGPGNGKYPRQGCNNYYIDQPRPAWSPPPVYGRKKALLCGVTYNDTNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVRPLPRGAKLHAIIDSCYSGTVLDLPFVCKINGVQMGRSKNSNSLL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHccccccEEEccccccccccccHHHHHHHHHHHHHHHcccccEEEEEEEccccccccccccccccccEEEEEcccccccccccHHHHHHHHcccccccEEEEEEEccccccccccccEEEEccEEEcccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEcccccccccccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEcccccHHccccHHHHHHHHHHHHHHccccHccEEEEEcccccccccccHHHHHHHHHHHHHccccccEEEEEEcccccccccccccccccccEEEEEccccccccEEccHHHHHHHcccccccEEEEEEEcccccccEcccEEEEEccEEEEEcccccccc
Coil and Loop (DISEMBL)
mtsrvercsgcgrqlwlppqavAARCyacrsvtsfpsssQRWAQVYgsvsqphhnvvtivpsnyvaagpgngkyprqgcnnyyidqprpawspppvygrkkallcgvtyndtnymltGSINDVKSMWFLLVRMLGFPSDCVVILteeeknpyriptkQNIRTAMRWLaqdcqpgdslvfhysghgsrqkdynkdeldgfdeticpldhetegpiiddeinativrplprgakLHAIIDscysgtvldlpfvckingvqmgrsknsnsll
Flexible Loop (DISEMBL)
mtsrvercsgcgrqlwlppqAVAARCYACRSVTSFPSSSQRWAQVYGSVSQPHHNVVTIVPSNYVAAGPGNGKYPRQGCNNYYIDQPRPAWSPPPVYGRKKALLCGVTYNDTNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILteeeknpyriptKQNIRTAMRWLAQDCQPGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHetegpiiddeiNATIVRPLPRGAKLHAIIDSCYSGTVLDLPFVCKingvqmgrsknsnsll
Low Complexity Region (SEG)
MTSRVERCSGCGRQLWLPPQAVAARCYACRSVTSFPSSSQRWAQVYGSVSQPHHNVVTIVPSNYVAAGPGNGKYPRQGCNNYYIDQPRPAWSPPPVYGRKKALLCGVTYNDTNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVRPLPRGAKLHAIIDSCYSGTVLDLPFVCKINGVQMGRSKNSNSLL
Disordered region (IsUnstruct)
*******CSGCGRQLWLPPQAVAARCYACRSVTSFPSSSQRWAQVYGSVSQPHHNVVTIVPSNYVAAGPGNGKYPRQGCNNYYIDQPRPAWSPPPVYGRKKALLCGVTYNDTNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGH**********ELDGFDETICPLDHETEGPIIDDEINATIVRPLPRGAKLHAIIDSCYSGTVLDLPFVCKINGV************
Disordered Region (DISOPRED)
**SRVERCSGCGRQLWLPPQAVAARCYAC*******************************************************************YGRKKALLCGVTYNDTNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVRPLPRGAKLHAIIDSCYSGTVLDLPFVC*****************
Disordered Region (DISEMBL)
*********GCGRQLWLPPQAVAARCYACRS***********AQVYGSVSQPHHNVVTIVPSNYVAAGPGNGKYPRQGCNNYYIDQPRPAWSPPPVYGRKKALLCGVTYNDTNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVRPLPRGAKLHAIIDSCYSGTVLDLPFVCKINGVQMGR********
Disordered Region (DISPRO)
***RVERCSGCGRQLWLPPQAVAARCYACRSVTSFPS**********SV*Q*HH********************************PRPAWSPPPVYGRKKALLCGVTYNDTNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVRPLPRGAKLHAIIDSCYSGTVLDLPFVCKINGVQMGRSK******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTSRVERCSGCGRQLWLPPQAVAARCYACRSVTSFPSSSQRWAQVYGSVSQPHHNVVTIVPSNYVAAGPGNGKYPRQGCNNYYIDQPRPAWSPPPVYGRKKALLCGVTYNDTNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVRPLPRGAKLHAIIDSCYSGTVLDLPFVCKINGVQMGRSKNSNSLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	269	2.2.26 [Sep-21-2011]
Q7XJE6	367	Metacaspase-1 OS=Arabidop	yes	no	0.810	0.594	0.483	1e-61
Q9FMG1	362	Metacaspase-3 OS=Arabidop	no	no	0.910	0.676	0.482	1e-60
Q7XJE5	418	Metacaspase-2 OS=Arabidop	no	no	0.899	0.578	0.450	6e-58
O74477	425	Metacaspase-1 OS=Schizosa	yes	no	0.657	0.416	0.469	2e-45
A5D9W7	410	Metacaspase-1 OS=Meyerozy	N/A	no	0.594	0.390	0.525	7e-44
A7F075	432	Metacaspase-1 OS=Scleroti	N/A	no	0.594	0.370	0.518	3e-42
Q4PEQ5	402	Metacaspase-1 OS=Ustilago	N/A	no	0.587	0.393	0.503	6e-42
Q6BH13	440	Metacaspase-1 OS=Debaryom	yes	no	0.594	0.363	0.518	9e-42
A6SDT7	431	Metacaspase-1 OS=Botryoti	N/A	no	0.594	0.371	0.506	1e-41
Q7S4N5	441	Metacaspase-1B OS=Neurosp	N/A	no	0.594	0.362	0.5	3e-41

>sp|Q7XJE6|MCA1_ARATH Metacaspase-1 OS=Arabidopsis thaliana GN=AMC1 PE=1 SV=1

 Score =  236 bits (603), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 120/248 (48%), Positives = 153/248 (61%), Gaps = 30/248 (12%)

Query: 8   CSGCGRQLWLPPQAVAARCYACRSVTSFPSSSQRWAQVYGSVSQPHHNVVTIVPSNYVAA 67
           CSGC   L LP  A + RC  C++VT                           P   + A
Sbjct: 18  CSGCRTPLQLPSGARSIRCALCQAVTHIADPRTAPPPQ---------PSSAPSPPPQIHA 68

Query: 68  GPGNGKYPRQGCNNYYIDQPRPAWSPPPVYGRKKALLCGVTYNDTNYMLTGSINDVKSMW 127
            PG   +P                     +GRK+A++CG++Y  + + L G IND K M 
Sbjct: 69  PPGQLPHP---------------------HGRKRAVICGISYRFSRHELKGCINDAKCMR 107

Query: 128 FLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGHGSR 187
            LL+    F  D +++LTEEE +PYRIPTKQN+R A+ WL Q C  GDSLVFHYSGHGSR
Sbjct: 108 HLLINKFKFSPDSILMLTEEETDPYRIPTKQNMRMALYWLVQGCTAGDSLVFHYSGHGSR 167

Query: 188 QKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVRPLPRGAKLHAIIDSCYSGTVLD 247
           Q++YN DE+DG+DET+CPLD ET+G I+DDEINATIVRPLP G KLH+IID+C+SGTVLD
Sbjct: 168 QRNYNGDEVDGYDETLCPLDFETQGMIVDDEINATIVRPLPHGVKLHSIIDACHSGTVLD 227

Query: 248 LPFVCKIN 255
           LPF+C++N
Sbjct: 228 LPFLCRMN 235

Cysteine protease that cleaves specifically after arginine or lysine residues. Does not cleave caspase-specific substrates. Acts as a positive regulator of cell death. Required for both oxidative stress cell death response and hypersensitive cell death response mediated by immune response.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: -

>sp|Q9FMG1|MCA3_ARATH Metacaspase-3 OS=Arabidopsis thaliana GN=AMC3 PE=2 SV=1

 Score =  233 bits (594), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 123/255 (48%), Positives = 158/255 (61%), Gaps = 10/255 (3%)

Query: 1   MTSRVERCSGCGRQLWLPPQAVAARCYACRSVTSFPSSSQRWAQVYGSVSQPHHNVVTIV 60
           M SR E    CGR++W+ P A   +C  C +VT          Q+Y  V         I 
Sbjct: 1   MASRREVRCRCGRRMWVQPDARTVQCSTCHTVT----------QLYSLVDIARGANRIIH 50

Query: 61  PSNYVAAGPGNGKYPRQGCNNYYIDQPRPAWSPPPVYGRKKALLCGVTYNDTNYMLTGSI 120
               +        + +Q         PR     P  +G+K+A+LCGV Y   +Y L G I
Sbjct: 51  GFQQLLRQHQPQHHEQQQQQMMAQPPPRLLEPLPSPFGKKRAVLCGVNYKGKSYSLKGCI 110

Query: 121 NDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFH 180
           +D KSM  LLV+ +GFP D +++LTE+E +P RIPTK+NIR AMRWL +  +  DSLVFH
Sbjct: 111 SDAKSMRSLLVQQMGFPIDSILMLTEDEASPQRIPTKRNIRKAMRWLVEGNRARDSLVFH 170

Query: 181 YSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVRPLPRGAKLHAIIDSC 240
           +SGHGS+Q DYN DE+DG DE +CPLDHETEG IIDDEIN  +VRPL  GAKLHA+ID+C
Sbjct: 171 FSGHGSQQNDYNGDEIDGQDEALCPLDHETEGKIIDDEINRILVRPLVHGAKLHAVIDAC 230

Query: 241 YSGTVLDLPFVCKIN 255
            SGTVLDLPF+C++ 
Sbjct: 231 NSGTVLDLPFICRME 245

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q7XJE5|MCA2_ARATH Metacaspase-2 OS=Arabidopsis thaliana GN=AMC2 PE=1 SV=1

 Score =  224 bits (570), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 122/271 (45%), Positives = 161/271 (59%), Gaps = 29/271 (10%)

Query: 8   CSGCGRQLWLPPQAVAARCYACRSVTSFPSSSQRWAQVYGSVSQPHHNVVTIVPSNYV-- 65
           CS C   L LPP A   RC  C + T    + +   Q + S S       +  PS ++  
Sbjct: 7   CSSCRTPLHLPPGATRIRCAICHAFTLI--APEPRLQSHASASPFPFPNSSPAPSTFIYP 64

Query: 66  ------------AAGPGNGKYPRQGCNNYYIDQPRPAWSP---------PPVYGRKKALL 104
                       A  P N   P    ++Y      PA SP         PPV+G+K+A++
Sbjct: 65  PPTPSPYTHAPHAPSPFNHAPP----DSYPFTHAPPASSPFNHAPPGPPPPVHGQKRAVI 120

Query: 105 CGVTYNDTNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAM 164
            GV+Y +T   L G IND   M F+L++   FP  C+++LTEEE +P R PTK NI  AM
Sbjct: 121 VGVSYKNTKDELKGCINDANCMKFMLMKRFQFPESCILMLTEEEADPMRWPTKNNITMAM 180

Query: 165 RWLAQDCQPGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIV 224
            WL   C+PGDSLVFH+SGHG+ Q D N DE+DGFDET+ P+DH T G I+DDEINATIV
Sbjct: 181 HWLVLSCKPGDSLVFHFSGHGNNQMDDNGDEVDGFDETLLPVDHRTSGVIVDDEINATIV 240

Query: 225 RPLPRGAKLHAIIDSCYSGTVLDLPFVCKIN 255
           RPLP G KLHAI+D+C+SGTV+DLP++C+++
Sbjct: 241 RPLPYGVKLHAIVDACHSGTVMDLPYLCRMD 271

Acts as a negative regulator of oxidative stress cell death and hypersensitive cell death response mediated by immune response. Acts via indirect or direct regulation of AMC1 at postranscriptional level.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|O74477|MCA1_SCHPO Metacaspase-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pca1 PE=2 SV=1

 Score =  182 bits (462), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 91/194 (46%), Positives = 118/194 (60%), Gaps = 17/194 (8%)

Query: 64  YVAAGPGNGKYPRQGCNNYYIDQPRPAWSPPPVYGRKKALLCGVTYNDTNYMLTGSINDV 123
           Y  AG GN +Y    C                  G++KALL G+ Y +T   L G INDV
Sbjct: 111 YNLAGGGNFQYQYSTCQ-----------------GKRKALLIGINYLNTQNELQGCINDV 153

Query: 124 KSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSG 183
            SM  LL++  G+  + +VI+T+   N   IPT+QN+  AMRWL  D QP D+L FHYSG
Sbjct: 154 MSMSQLLIQRYGYKQEDMVIMTDTASNQRAIPTRQNMLDAMRWLVSDAQPNDALFFHYSG 213

Query: 184 HGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVRPLPRGAKLHAIIDSCYSG 243
           HG + KD + DE+DG+DETI PLDH+  G IIDDE++  +V+PLP G +L A+ DSC+SG
Sbjct: 214 HGGQTKDLDGDEVDGYDETIYPLDHQYAGQIIDDEMHEIMVKPLPAGCRLTALFDSCHSG 273

Query: 244 TVLDLPFVCKINGV 257
             LDLPF     GV
Sbjct: 274 GALDLPFTYSTKGV 287

Involved in cell death (apoptosis).

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|A5D9W7|MCA1_PICGU Metacaspase-1 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=MCA1 PE=3 SV=2

 Score =  177 bits (449), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 84/160 (52%), Positives = 112/160 (70%)

Query: 98  GRKKALLCGVTYNDTNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTK 157
           GRKKALL G+ Y  ++  L G +ND+K+M   L R  G+  D +VILT+++    +IPTK
Sbjct: 114 GRKKALLVGINYFGSSNELRGCVNDIKNMSNFLNRRFGYSYDDMVILTDDQNQRNKIPTK 173

Query: 158 QNIRTAMRWLAQDCQPGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDD 217
           +NI  AM+WL +D +P DSLVFHYSGHG   KD + DE +G+DE I P+D +  G I+DD
Sbjct: 174 ENIIRAMQWLVKDARPNDSLVFHYSGHGGITKDLDGDEDEGYDEVIYPVDFQQAGHIVDD 233

Query: 218 EINATIVRPLPRGAKLHAIIDSCYSGTVLDLPFVCKINGV 257
           +++A +VRPLP G KL A+ DSC+SGT LDLPFV    GV
Sbjct: 234 DMHAIMVRPLPPGCKLTALFDSCHSGTALDLPFVYSTKGV 273

Involved in cell death (apoptosis).

Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) (taxid: 294746)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|A7F075|MCA1_SCLS1 Metacaspase-1 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=casA PE=3 SV=1

 Score =  172 bits (435), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 83/160 (51%), Positives = 106/160 (66%)

Query: 98  GRKKALLCGVTYNDTNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTK 157
           GR+KALL G+ Y      L G INDVK+M   L    G+  D +VILT++++NP   PTK
Sbjct: 137 GRRKALLIGINYFGQRGQLRGCINDVKNMSSYLHENFGYQRDDMVILTDDQQNPMSQPTK 196

Query: 158 QNIRTAMRWLAQDCQPGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDD 217
           QNI  AM WL +D +P DSL FHYSGHG + KD + DE DG+DE I P+D    G I+DD
Sbjct: 197 QNILRAMHWLVKDARPNDSLFFHYSGHGGQTKDLDGDEEDGYDEVIYPVDFRQVGHIVDD 256

Query: 218 EINATIVRPLPRGAKLHAIIDSCYSGTVLDLPFVCKINGV 257
           E++  +V+PL  G +L AI DSC+SGT LDLP+V    GV
Sbjct: 257 EMHRIMVQPLQPGVRLTAIFDSCHSGTALDLPYVYSTQGV 296

Involved in cell death (apoptosis).

Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) (taxid: 665079)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q4PEQ5|MCA1_USTMA Metacaspase-1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=MCA1 PE=3 SV=1

 Score =  171 bits (432), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 80/159 (50%), Positives = 110/159 (69%), Gaps = 1/159 (0%)

Query: 98  GRKKALLCGVTYNDTNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTK 157
           G++KALL G+ Y   N  L G INDV+++   L R  G+  D +V+LT+++++   IPT+
Sbjct: 108 GKRKALLIGINYFGQNGELRGCINDVRNVQNFL-RQRGYKDDDMVVLTDDQRDARSIPTR 166

Query: 158 QNIRTAMRWLAQDCQPGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDD 217
           QN+  AM WL +  QPGD+L FHYSGHG + K    DE DG++ETI PLD++  G I DD
Sbjct: 167 QNMTAAMHWLVRGAQPGDALFFHYSGHGGQAKATQGDEADGYNETIIPLDYQQAGQIEDD 226

Query: 218 EINATIVRPLPRGAKLHAIIDSCYSGTVLDLPFVCKING 256
           E++A +VRPLP G +L AI DSC+SGT LDLP+V   +G
Sbjct: 227 ELHAIMVRPLPVGCRLTAIFDSCHSGTALDLPYVYTTSG 265

Involved in cell death (apoptosis).

Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q6BH13|MCA1_DEBHA Metacaspase-1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=MCA1 PE=3 SV=2

 Score =  170 bits (431), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 83/160 (51%), Positives = 107/160 (66%)

Query: 98  GRKKALLCGVTYNDTNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTK 157
           G+KKALL G+ Y  +   L G INDVK+M   L +  G+  D +VILT+++    RIPTK
Sbjct: 144 GKKKALLVGINYTGSKNQLRGCINDVKNMSNFLNQHFGYSYDDMVILTDDQNQRARIPTK 203

Query: 158 QNIRTAMRWLAQDCQPGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDD 217
           +NI  AM+WL +D +P DSLVFHYSGHG   KD   DE  G D+ I PLD E  G IIDD
Sbjct: 204 ENIIRAMQWLVKDARPNDSLVFHYSGHGGVTKDLVGDEESGMDDVIYPLDFEVNGHIIDD 263

Query: 218 EINATIVRPLPRGAKLHAIIDSCYSGTVLDLPFVCKINGV 257
            ++  +V+PLP+G +L A+ DSC+SGT LDLP+V    GV
Sbjct: 264 IMHDIMVKPLPQGCRLTALYDSCHSGTALDLPYVYSTKGV 303

Involved in cell death (apoptosis).

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|A6SDT7|MCA1_BOTFB Metacaspase-1 OS=Botryotinia fuckeliana (strain B05.10) GN=casA PE=3 SV=1

 Score =  170 bits (430), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 81/160 (50%), Positives = 106/160 (66%)

Query: 98  GRKKALLCGVTYNDTNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTK 157
           G++KALL G+ Y      L G INDVK+M   L    G+  D +V+LT++++NP   PTK
Sbjct: 136 GKRKALLIGINYFGQRGQLRGCINDVKNMSSYLHENFGYQRDDMVLLTDDQQNPMSQPTK 195

Query: 158 QNIRTAMRWLAQDCQPGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDD 217
           QNI  AM WL +D +P DSL FHYSGHG + KD + DE DG+DE I P+D    G I+DD
Sbjct: 196 QNILRAMHWLVKDARPNDSLFFHYSGHGGQTKDLDGDEEDGYDEVIYPVDFRQVGHIVDD 255

Query: 218 EINATIVRPLPRGAKLHAIIDSCYSGTVLDLPFVCKINGV 257
           E++  +V+PL  G +L AI DSC+SGT LDLP+V    GV
Sbjct: 256 EMHRIMVQPLQPGVRLTAIFDSCHSGTALDLPYVYSTQGV 295

Involved in cell death (apoptosis).

Botryotinia fuckeliana (strain B05.10) (taxid: 332648)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q7S4N5|MCA1B_NEUCR Metacaspase-1B OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=mca-2 PE=3 SV=1

 Score =  168 bits (426), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 80/160 (50%), Positives = 104/160 (65%)

Query: 98  GRKKALLCGVTYNDTNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTK 157
           GR KALL G+ Y      L G INDV++M   LV    +  + +VILT++++NP   PTK
Sbjct: 126 GRHKALLIGINYFGQRGQLRGCINDVRNMSSYLVEHFRYKREDMVILTDDQQNPMSQPTK 185

Query: 158 QNIRTAMRWLAQDCQPGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDD 217
           QNI  AM WL +D +P DSL FHYSGHG + KD + DE DG+DE I P+D    G I DD
Sbjct: 186 QNILRAMHWLVKDARPNDSLFFHYSGHGGQTKDLDGDEEDGYDEVIYPVDFRQVGHITDD 245

Query: 218 EINATIVRPLPRGAKLHAIIDSCYSGTVLDLPFVCKINGV 257
           E++  +VRPL  G +L AI DSC+SGT LDLP++    G+
Sbjct: 246 EMHRIMVRPLQAGVRLTAIFDSCHSGTALDLPYIYSTQGI 285

Involved in cell death (apoptosis).

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
224140795	384	predicted protein [Populus trichocarpa]	0.929	0.651	0.546	3e-74
356551106	383	PREDICTED: metacaspase-1-like [Glycine m	0.940	0.660	0.492	4e-66
410060789	362	metacaspase 2 [Solanum lycopersicum]	0.895	0.665	0.516	1e-65
255569794	378	caspase, putative [Ricinus communis] gi|	0.899	0.640	0.512	5e-65
225454952	362	PREDICTED: metacaspase-1 [Vitis vinifera	0.847	0.629	0.520	1e-64
255571075	376	caspase, putative [Ricinus communis] gi|	0.899	0.643	0.501	1e-64
147783583	352	hypothetical protein VITISV_030848 [Viti	0.847	0.647	0.520	4e-64
224137094	362	predicted protein [Populus trichocarpa]	0.840	0.624	0.5	2e-63
118486435	366	unknown [Populus trichocarpa]	0.840	0.617	0.5	3e-63
297734653	411	unnamed protein product [Vitis vinifera]	0.858	0.562	0.478	1e-62

>gi|224140795|ref|XP_002323764.1| predicted protein [Populus trichocarpa] gi|222866766|gb|EEF03897.1| predicted protein [Populus trichocarpa]

 Score =  284 bits (726), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 140/256 (54%), Positives = 181/256 (70%), Gaps = 6/256 (2%)

Query: 5   VERCSGCGRQLWLPPQAVAARCYACRSVTSFPSSSQRWAQVYGSVSQPHHNVVTIVPSNY 64
           +E+CS CG QL +PP A A RC  C++VT    S    AQ   S  +    ++++V SN 
Sbjct: 3   IEKCSRCGVQLVVPPDAQAIRCAVCQAVTRV-HSYYPLAQARESAGRITSGLISMVSSNI 61

Query: 65  --VAAGPGNGKYPRQGCNNYYIDQP-RPAWSPP--PVYGRKKALLCGVTYNDTNYMLTGS 119
             + +   +  YP  G   YY   P RP    P   ++GRK+ALLCGV+Y   +Y + GS
Sbjct: 62  TTMTSSVSSSSYPVPGYGGYYAQPPIRPVLQLPLPSMHGRKRALLCGVSYRGKSYKIKGS 121

Query: 120 INDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVF 179
           INDVK M + LV   GFP+D +++LTE+E NP +IPTK+NIR A+RWL Q CQPGDSLVF
Sbjct: 122 INDVKCMRYFLVEKFGFPNDSILMLTEDETNPLQIPTKENIRLALRWLVQGCQPGDSLVF 181

Query: 180 HYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVRPLPRGAKLHAIIDS 239
           H+SGHGS+Q DY+ DE+DGFDET+CPLD+ET+G I+DDEIN TIVRPLP+G  LHAIID+
Sbjct: 182 HFSGHGSKQLDYDMDEVDGFDETLCPLDYETQGMIVDDEINETIVRPLPQGVTLHAIIDA 241

Query: 240 CYSGTVLDLPFVCKIN 255
           CYS T+LDLPFVC++N
Sbjct: 242 CYSQTMLDLPFVCRMN 257

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551106|ref|XP_003543919.1| PREDICTED: metacaspase-1-like [Glycine max]

 Score =  257 bits (656), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 128/260 (49%), Positives = 169/260 (65%), Gaps = 7/260 (2%)

Query: 1   MTSRVERCSGCGRQLWLPPQAVAARCYACRSVTSFPSSSQRWAQVYGSVSQPHHNVVTIV 60
           M SR ERC+ CG  L +PP+     C  C  +T    ++  W+Q Y S           V
Sbjct: 1   MASRQERCNQCGILLMVPPEVHVFECAVCHGITQIRPTAGPWSQAYNSFHHLAGRFRGFV 60

Query: 61  PSNYVAAGPGNGKYPRQGCNNYYIDQPRPAWSPPP---VYGRKKALLCGVTYNDTNYMLT 117
            +   ++   N  Y   G  + +   P+P  S  P   VYG K+A+LCG+ Y+  +Y L 
Sbjct: 61  NTMMTSSVNSNPSY--YGTTHEFGYYPQPPQSLRPSYHVYGSKRAVLCGIRYHGKSYRLK 118

Query: 118 GSINDVKSMWFLLVRMLGFPSDCVVILTE--EEKNPYRIPTKQNIRTAMRWLAQDCQPGD 175
           GS+NDVK M + L++  GFPS  +++LT+  EE+N  RIPTK NI+ AMRWL +  Q GD
Sbjct: 119 GSVNDVKCMKYFLIKEFGFPSASILMLTDDREERNQLRIPTKYNIQMAMRWLIEGSQSGD 178

Query: 176 SLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVRPLPRGAKLHA 235
           SLVFH+SGHG+++ +   DE+DGFDE ICP+D+E +G I+DDEINA IVRPLPRGAKLHA
Sbjct: 179 SLVFHFSGHGTQEMNMYGDEIDGFDEAICPVDYEEQGKILDDEINAAIVRPLPRGAKLHA 238

Query: 236 IIDSCYSGTVLDLPFVCKIN 255
           IID+CYSGTVLDL FVCK+N
Sbjct: 239 IIDACYSGTVLDLAFVCKMN 258

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|410060789|gb|AFV53356.1| metacaspase 2 [Solanum lycopersicum]

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 137/265 (51%), Positives = 173/265 (65%), Gaps = 24/265 (9%)

Query: 1   MTSRVERCSGCGRQLWLPPQAVAARCYACRSVTSFPSSSQRWAQVYGSVSQPHHNVVTIV 60
           M SR  +C  CG ++  P  A  A C  C+SVT       + A+ +G  + P  N     
Sbjct: 1   MDSRRCKCQWCGMKIAAPIGAQTATCPRCQSVTQL-----QPARNHGFANFPTAN----- 50

Query: 61  PSNYVAAGPGNGKYPRQGCNNYYIDQP----RPA------WSPPPVYGRKKALLCGVTYN 110
            +N   A P     P + C N    QP    RP         PP V+GRK+A+LCG+TY 
Sbjct: 51  -NNMSPAFPSR---PGRMCANANNFQPQQFNRPMSPQINNIRPPAVHGRKRAVLCGITYR 106

Query: 111 DTNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQD 170
                L GSINDV SM + LV  LGFP+  V++LTE+EK+PY+ PTK NIR+A+RWL Q 
Sbjct: 107 GHPKSLKGSINDVLSMRYFLVEKLGFPNASVLVLTEDEKDPYKYPTKANIRSALRWLVQG 166

Query: 171 CQPGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVRPLPRG 230
           CQPGDSLVFHYSGHG+R +D++ DE+DG DE++CP+D ETEG I+DDEIN TIVRPLPRG
Sbjct: 167 CQPGDSLVFHYSGHGTRVRDHDGDEIDGHDESLCPVDFETEGRILDDEINNTIVRPLPRG 226

Query: 231 AKLHAIIDSCYSGTVLDLPFVCKIN 255
           A LH IID+C+SGT LDLPF+C+IN
Sbjct: 227 ATLHGIIDTCFSGTFLDLPFLCRIN 251

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569794|ref|XP_002525861.1| caspase, putative [Ricinus communis] gi|223534866|gb|EEF36555.1| caspase, putative [Ricinus communis]

 Score =  253 bits (647), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 127/248 (51%), Positives = 166/248 (66%), Gaps = 6/248 (2%)

Query: 14  QLWLPPQAVAARCYACRSVTSFPSSSQRWAQVYGSVSQPHHNVVTIV------PSNYVAA 67
           QL +P +A + RC  C+++T         AQV  +++     ++ +V      P +  A 
Sbjct: 4   QLLVPAEAQSIRCSLCQAITKVQPHDHPLAQVRDTINHAATRIINMVSTTVTGPVSSYAG 63

Query: 68  GPGNGKYPRQGCNNYYIDQPRPAWSPPPVYGRKKALLCGVTYNDTNYMLTGSINDVKSMW 127
           G G G     G               P  +GRK+A+LCGV+Y   +Y + GSINDV  M 
Sbjct: 64  GGGGGTTYGYGYYVQPQPPRPVLLPLPSAHGRKRAVLCGVSYRGKSYKIKGSINDVNCMR 123

Query: 128 FLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGHGSR 187
           + LV  LGFP+D ++ILTE+E +P +IPTK+N+R A+RWL Q CQ GDSLVFH+SGHGS+
Sbjct: 124 YFLVEKLGFPNDSILILTEDETSPVKIPTKENMRLALRWLVQGCQAGDSLVFHFSGHGSQ 183

Query: 188 QKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVRPLPRGAKLHAIIDSCYSGTVLD 247
             D + DE+DGFDET+CPLD+ETEG I+DDEIN TIVRPLP+GA LHAIIDSCYSGT+LD
Sbjct: 184 VPDSDMDEIDGFDETLCPLDYETEGMIVDDEINETIVRPLPKGATLHAIIDSCYSGTILD 243

Query: 248 LPFVCKIN 255
           LPFVCK+N
Sbjct: 244 LPFVCKMN 251

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454952|ref|XP_002280421.1| PREDICTED: metacaspase-1 [Vitis vinifera] gi|297744960|emb|CBI38552.3| unnamed protein product [Vitis vinifera]

 Score =  252 bits (644), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 129/248 (52%), Positives = 156/248 (62%), Gaps = 20/248 (8%)

Query: 8   CSGCGRQLWLPPQAVAARCYACRSVTSFPSSSQRWAQVYGSVSQPHHNVVTIVPSNYVAA 67
           CS C   L LPP A A RC  C +VT            Y S +Q HH V    P      
Sbjct: 7   CSNCRIPLQLPPGARAIRCSVCHAVTRIADPRAVPTPAYSS-TQSHHAVPPAPPVPSPYG 65

Query: 68  GPGNGKYPRQGCNNYYIDQPRPAWSPPPVYGRKKALLCGVTYNDTNYMLTGSINDVKSMW 127
                                PA  P  V+GRKKAL+CGV+Y  + Y L G +ND K M 
Sbjct: 66  -------------------QMPAGQPAGVHGRKKALVCGVSYTSSRYELKGCVNDAKCMK 106

Query: 128 FLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGHGSR 187
           +LLV    FP   V++LTEEE +PY+ PTK N+R AM WL Q CQPGDSLVFH+SGHGS+
Sbjct: 107 YLLVNRFKFPEASVLMLTEEEIDPYKKPTKHNMRMAMFWLVQGCQPGDSLVFHFSGHGSQ 166

Query: 188 QKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVRPLPRGAKLHAIIDSCYSGTVLD 247
           Q++Y  DE+DG+DET+CPLD ET+G I+DDEINA IVRPLP G KLHAIID+C+SGTVLD
Sbjct: 167 QRNYTGDEVDGYDETLCPLDFETQGMIVDDEINAAIVRPLPHGVKLHAIIDACHSGTVLD 226

Query: 248 LPFVCKIN 255
           LPF+C++N
Sbjct: 227 LPFLCRMN 234

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571075|ref|XP_002526488.1| caspase, putative [Ricinus communis] gi|223534163|gb|EEF35879.1| caspase, putative [Ricinus communis]

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 127/253 (50%), Positives = 162/253 (64%), Gaps = 11/253 (4%)

Query: 3   SRVERCSGCGRQLWLPPQAVAARCYACRSVTSFPSSSQRWAQVYGSVSQPHHNVVTIVPS 62
           S +  CS C   L LPP A + RC  CR+VT    +         + S  H         
Sbjct: 2   SMLVNCSHCWTPLQLPPGARSIRCSICRAVTRIADARTAPPPPSYAPSSTHALPPPSSAP 61

Query: 63  NYVAAGPGNGKYPRQGCNNYYIDQPRPAWSPPPVYGRKKALLCGVTYNDTNYMLTGSIND 122
           +   A P    Y      NY      P   PP  +GRKKA++CG++Y  + Y L G IND
Sbjct: 62  SSTYAPPLPSPY------NY-----APPGPPPNAHGRKKAVICGISYRFSRYELKGCIND 110

Query: 123 VKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYS 182
            K M +L++    FP D +++LTEEE +PYRIPTK N+R A+ WL Q CQPGDSL+FHYS
Sbjct: 111 AKCMRYLVINKFHFPEDSILMLTEEETDPYRIPTKHNLRMALYWLVQGCQPGDSLLFHYS 170

Query: 183 GHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVRPLPRGAKLHAIIDSCYS 242
           GHGSRQ +Y  DE+DG+DET+CPLD E++G I+DDEIN TIVRPLP+G KLHAIID+C+S
Sbjct: 171 GHGSRQINYTGDEVDGYDETLCPLDFESQGMIVDDEINETIVRPLPQGVKLHAIIDACHS 230

Query: 243 GTVLDLPFVCKIN 255
           GTVLDLPF+C++N
Sbjct: 231 GTVLDLPFLCRMN 243

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147783583|emb|CAN68009.1| hypothetical protein VITISV_030848 [Vitis vinifera]

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 129/248 (52%), Positives = 156/248 (62%), Gaps = 20/248 (8%)

Query: 8   CSGCGRQLWLPPQAVAARCYACRSVTSFPSSSQRWAQVYGSVSQPHHNVVTIVPSNYVAA 67
           CS C   L LPP A A RC  C +VT            Y S +Q HH V    P      
Sbjct: 7   CSNCRIPLQLPPGARAIRCSVCHAVTRIADPRAVPTPPYSS-TQSHHAVPPAPPVPSPYG 65

Query: 68  GPGNGKYPRQGCNNYYIDQPRPAWSPPPVYGRKKALLCGVTYNDTNYMLTGSINDVKSMW 127
                                PA  P  V+GRKKAL+CGV+Y  + Y L G +ND K M 
Sbjct: 66  -------------------QMPAGQPAGVHGRKKALVCGVSYTSSRYELKGCVNDAKCMK 106

Query: 128 FLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGHGSR 187
           +LLV    FP   V++LTEEE +PY+ PTK N+R AM WL Q CQPGDSLVFH+SGHGS+
Sbjct: 107 YLLVNRFKFPEASVLMLTEEEIDPYKKPTKHNMRMAMFWLVQGCQPGDSLVFHFSGHGSQ 166

Query: 188 QKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVRPLPRGAKLHAIIDSCYSGTVLD 247
           Q++Y  DE+DG+DET+CPLD ET+G I+DDEINA IVRPLP G KLHAIID+C+SGTVLD
Sbjct: 167 QRNYTGDEVDGYDETLCPLDFETQGMIVDDEINAAIVRPLPHGVKLHAIIDACHSGTVLD 226

Query: 248 LPFVCKIN 255
           LPF+C++N
Sbjct: 227 LPFLCRMN 234

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137094|ref|XP_002327020.1| predicted protein [Populus trichocarpa] gi|222835335|gb|EEE73770.1| predicted protein [Populus trichocarpa]

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 124/248 (50%), Positives = 162/248 (65%), Gaps = 22/248 (8%)

Query: 8   CSGCGRQLWLPPQAVAARCYACRSVTSFPSSSQRWAQVYGSVSQPHHNVVTIVPSNYVAA 67
           CS C   L LPP A + RC  C++VT     S+         ++P  + +   PS Y  A
Sbjct: 5   CSKCQTPLQLPPGAESIRCVICQAVTHVAVHSRHAPPPSNPTTRPPPSTLA-PPSPYNHA 63

Query: 68  GPGNGKYPRQGCNNYYIDQPRPAWSPPPVYGRKKALLCGVTYNDTNYMLTGSINDVKSMW 127
            PG                      PP  +GRKKA++ G++Y  + + L G IND K M 
Sbjct: 64  PPG---------------------PPPNQHGRKKAVIVGISYKYSRHELKGCINDAKCMR 102

Query: 128 FLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGHGSR 187
            LL+    FP D +++LTEEE +PYRIP KQN+R A+ WL Q CQPGDSL+FHYSGHGSR
Sbjct: 103 HLLMSKFQFPQDSILMLTEEETDPYRIPNKQNMRMALFWLVQGCQPGDSLLFHYSGHGSR 162

Query: 188 QKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVRPLPRGAKLHAIIDSCYSGTVLD 247
           Q++YN DE+DG+DET+CPLD ET+G I+DDEINATIVRPLP G +LHA+ID+C+SGTVLD
Sbjct: 163 QRNYNGDEVDGYDETLCPLDFETQGMIVDDEINATIVRPLPHGVRLHAMIDACHSGTVLD 222

Query: 248 LPFVCKIN 255
           LPF+C+++
Sbjct: 223 LPFLCRMD 230

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486435|gb|ABK95057.1| unknown [Populus trichocarpa]

 Score =  248 bits (632), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 124/248 (50%), Positives = 162/248 (65%), Gaps = 22/248 (8%)

Query: 8   CSGCGRQLWLPPQAVAARCYACRSVTSFPSSSQRWAQVYGSVSQPHHNVVTIVPSNYVAA 67
           CS C   L LPP A + RC  C++VT     S+         ++P  + +   PS Y  A
Sbjct: 9   CSKCQTPLQLPPGAESIRCVICQAVTHVAVHSRHAPPPSNPTTRPPPSTLA-PPSPYNHA 67

Query: 68  GPGNGKYPRQGCNNYYIDQPRPAWSPPPVYGRKKALLCGVTYNDTNYMLTGSINDVKSMW 127
            PG                      PP  +GRKKA++ G++Y  + + L G IND K M 
Sbjct: 68  PPG---------------------PPPNQHGRKKAVIVGISYKYSRHELKGCINDAKCMR 106

Query: 128 FLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGHGSR 187
            LL+    FP D +++LTEEE +PYRIP KQN+R A+ WL Q CQPGDSL+FHYSGHGSR
Sbjct: 107 HLLMSKFQFPQDSILMLTEEETDPYRIPNKQNMRMALFWLVQGCQPGDSLLFHYSGHGSR 166

Query: 188 QKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVRPLPRGAKLHAIIDSCYSGTVLD 247
           Q++YN DE+DG+DET+CPLD ET+G I+DDEINATIVRPLP G +LHA+ID+C+SGTVLD
Sbjct: 167 QRNYNGDEVDGYDETLCPLDFETQGMIVDDEINATIVRPLPHGVRLHAMIDACHSGTVLD 226

Query: 248 LPFVCKIN 255
           LPF+C+++
Sbjct: 227 LPFLCRMD 234

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734653|emb|CBI16704.3| unnamed protein product [Vitis vinifera]

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 122/255 (47%), Positives = 158/255 (61%), Gaps = 24/255 (9%)

Query: 2   TSRVERCSGCGRQLWLPPQAVAARCYACRSVTSFPSSSQRWAQVYGS-VSQPHHNVVTIV 60
           + R   C+ C   L LP  A + RC  C+ VT                   P   +  + 
Sbjct: 47  SERSLNCAHCRTPLQLPAGARSIRCAICQGVTQIADPRAVPPPPRADHAPPPQPQLPALS 106

Query: 61  PSNYVAAGPGNGKYPRQGCNNYYIDQPRPAWSPPPVYGRKKALLCGVTYNDTNYMLTGSI 120
           P N+   GP                       PP  +GRKKAL+CG++Y  + + L G I
Sbjct: 107 PYNHAPPGP-----------------------PPSAHGRKKALICGISYRYSRHELKGCI 143

Query: 121 NDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFH 180
           ND K M +LL+    FP   +++LTEEE +PYRIP KQN+R A+ WL Q CQPGDSL+FH
Sbjct: 144 NDAKCMKYLLMNKFQFPESSILMLTEEETDPYRIPNKQNLRMALYWLVQGCQPGDSLLFH 203

Query: 181 YSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVRPLPRGAKLHAIIDSC 240
           YSGHGSRQ++YN DE+DG+DET+CPLD ET+G I+DDEINATIVRPLP G KLHAIID+C
Sbjct: 204 YSGHGSRQRNYNGDEVDGYDETLCPLDFETQGMIVDDEINATIVRPLPHGVKLHAIIDAC 263

Query: 241 YSGTVLDLPFVCKIN 255
           +SGT+LDLPF+C+++
Sbjct: 264 HSGTILDLPFLCRMS 278

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
TAIR|locus:2173398	362	MC3 "metacaspase 3" [Arabidops	0.903	0.671	0.490	1.7e-59
TAIR|locus:2204798	367	MC1 "metacaspase 1" [Arabidops	0.843	0.618	0.502	1.9e-58
TAIR|locus:2117288	418	MC2 "metacaspase 2" [Arabidops	0.918	0.590	0.452	1.4e-55
POMBASE|SPCC1840.04	425	pca1 "metacaspase Pca1" [Schiz	0.594	0.376	0.525	7.6e-46
SGD|S000005723	432	MCA1 "Ca2+-dependent cysteine	0.881	0.548	0.385	8.7e-40
CGD|CAL0003470	448	MCA1 [Candida albicans (taxid:	0.691	0.415	0.448	6.3e-37
UNIPROTKB|Q5ANA8	448	MCA1 "Metacaspase-1" [Candida	0.691	0.415	0.448	6.3e-37
UNIPROTKB|A4QTY2	396	MCA1 "Metacaspase-1" [Magnapor	0.732	0.497	0.407	1.7e-36
ASPGD|ASPL0000043471	420	AN2503 [Emericella nidulans (t	0.594	0.380	0.456	2.4e-35
TAIR|locus:2207350	418	MC4 "metacaspase 4" [Arabidops	0.531	0.342	0.382	3.3e-21

TAIR|locus:2173398 MC3 "metacaspase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 610 (219.8 bits), Expect = 1.7e-59, P = 1.7e-59
 Identities = 128/261 (49%), Positives = 169/261 (64%)

Query:     1 MTSRVE-RCSGCGRQLWLPPQAVAARCYACRSVTSFPSSSQRWAQVYGSVSQPHHNVVTI 59
             M SR E RC  CGR++W+ P A   +C  C +VT   S       +    ++  H    +
Sbjct:     1 MASRREVRCR-CGRRMWVQPDARTVQCSTCHTVTQLYSL----VDIARGANRIIHGFQQL 55

Query:    60 VPSNYVAAGPGNGKYPRQGCNNYYIDQPRPAW-SP-PPVYGRKKALLCGVTYNDTNYMLT 117
             +  +     P + +  +Q      + QP P    P P  +G+K+A+LCGV Y   +Y L 
Sbjct:    56 LRQHQ----PQHHEQQQQ----QMMAQPPPRLLEPLPSPFGKKRAVLCGVNYKGKSYSLK 107

Query:   118 GSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSL 177
             G I+D KSM  LLV+ +GFP D +++LTE+E +P RIPTK+NIR AMRWL +  +  DSL
Sbjct:   108 GCISDAKSMRSLLVQQMGFPIDSILMLTEDEASPQRIPTKRNIRKAMRWLVEGNRARDSL 167

Query:   178 VFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVRPLPRGAKLHAII 237
             VFH+SGHGS+Q DYN DE+DG DE +CPLDHETEG IIDDEIN  +VRPL  GAKLHA+I
Sbjct:   168 VFHFSGHGSQQNDYNGDEIDGQDEALCPLDHETEGKIIDDEINRILVRPLVHGAKLHAVI 227

Query:   238 DSCYSGTVLDLPFVCKI--NG 256
             D+C SGTVLDLPF+C++  NG
Sbjct:   228 DACNSGTVLDLPFICRMERNG 248

GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

TAIR|locus:2204798 MC1 "metacaspase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 121/241 (50%), Positives = 158/241 (65%)

Query:    15 LWLPPQAVAARCYACRSVTSFPSSSQRWAQVYGSVSQPHHNVVTIVPSNYVAAGPGNGKY 74
             ++ PP  V   C  CR+    PS ++    +  ++ Q     VT +     A  P     
Sbjct:     9 IYAPPMLV--NCSGCRTPLQLPSGAR---SIRCALCQ----AVTHIADPRTAPPPQPSSA 59

Query:    75 PRQGCNNYYIDQPRPAWSPPPVYGRKKALLCGVTYNDTNYMLTGSINDVKSMWFLLVRML 134
             P        I  P P   P P +GRK+A++CG++Y  + + L G IND K M  LL+   
Sbjct:    60 PSPPPQ---IHAP-PGQLPHP-HGRKRAVICGISYRFSRHELKGCINDAKCMRHLLINKF 114

Query:   135 GFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGHGSRQKDYNKD 194
              F  D +++LTEEE +PYRIPTKQN+R A+ WL Q C  GDSLVFHYSGHGSRQ++YN D
Sbjct:   115 KFSPDSILMLTEEETDPYRIPTKQNMRMALYWLVQGCTAGDSLVFHYSGHGSRQRNYNGD 174

Query:   195 ELDGFDETICPLDHETEGPIIDDEINATIVRPLPRGAKLHAIIDSCYSGTVLDLPFVCKI 254
             E+DG+DET+CPLD ET+G I+DDEINATIVRPLP G KLH+IID+C+SGTVLDLPF+C++
Sbjct:   175 EVDGYDETLCPLDFETQGMIVDDEINATIVRPLPHGVKLHSIIDACHSGTVLDLPFLCRM 234

Query:   255 N 255
             N
Sbjct:   235 N 235

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0004197 "cysteine-type endopeptidase activity" evidence=IDA

GO:0043068 "positive regulation of programmed cell death" evidence=IGI;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

TAIR|locus:2117288 MC2 "metacaspase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
 Identities = 113/250 (45%), Positives = 158/250 (63%)

Query:     7 RCSGCGRQLWLPPQAVAARCYACRSVTSFPSSSQRWAQ-VYGSVSQPHHNVVTIVPSNYV 65
             RC+ C     + P+    + +A  S   FP+SS   +  +Y   +   +      PS + 
Sbjct:    24 RCAICHAFTLIAPEP-RLQSHASASPFPFPNSSPAPSTFIYPPPTPSPYTHAPHAPSPFN 82

Query:    66 AAGPGNGKYPRQGCNNYYIDQPRPAWSPPPVYGRKKALLCGVTYNDTNYMLTGSINDVKS 125
              A P +  +      +   +   P   PPPV+G+K+A++ GV+Y +T   L G IND   
Sbjct:    83 HAPPDSYPFTHAPPASSPFNHAPPG-PPPPVHGQKRAVIVGVSYKNTKDELKGCINDANC 141

Query:   126 MWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGHG 185
             M F+L++   FP  C+++LTEEE +P R PTK NI  AM WL   C+PGDSLVFH+SGHG
Sbjct:   142 MKFMLMKRFQFPESCILMLTEEEADPMRWPTKNNITMAMHWLVLSCKPGDSLVFHFSGHG 201

Query:   186 SRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVRPLPRGAKLHAIIDSCYSGTV 245
             + Q D N DE+DGFDET+ P+DH T G I+DDEINATIVRPLP G KLHAI+D+C+SGTV
Sbjct:   202 NNQMDDNGDEVDGFDETLLPVDHRTSGVIVDDEINATIVRPLPYGVKLHAIVDACHSGTV 261

Query:   246 LDLPFVCKIN 255
             +DLP++C+++
Sbjct:   262 MDLPYLCRMD 271

GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0043069 "negative regulation of programmed cell death" evidence=IGI

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

POMBASE|SPCC1840.04 pca1 "metacaspase Pca1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 446 (162.1 bits), Expect = 7.6e-46, Sum P(2) = 7.6e-46
 Identities = 84/160 (52%), Positives = 110/160 (68%)

Query:    98 GRKKALLCGVTYNDTNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTK 157
             G++KALL G+ Y +T   L G INDV SM  LL++  G+  + +VI+T+   N   IPT+
Sbjct:   128 GKRKALLIGINYLNTQNELQGCINDVMSMSQLLIQRYGYKQEDMVIMTDTASNQRAIPTR 187

Query:   158 QNIRTAMRWLAQDCQPGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDD 217
             QN+  AMRWL  D QP D+L FHYSGHG + KD + DE+DG+DETI PLDH+  G IIDD
Sbjct:   188 QNMLDAMRWLVSDAQPNDALFFHYSGHGGQTKDLDGDEVDGYDETIYPLDHQYAGQIIDD 247

Query:   218 EINATIVRPLPRGAKLHAIIDSCYSGTVLDLPFVCKINGV 257
             E++  +V+PLP G +L A+ DSC+SG  LDLPF     GV
Sbjct:   248 EMHEIMVKPLPAGCRLTALFDSCHSGGALDLPFTYSTKGV 287

GO:0004197 "cysteine-type endopeptidase activity" evidence=ISO

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0033554 "cellular response to stress" evidence=IMP

GO:0043065 "positive regulation of apoptotic process" evidence=IMP

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=NAS

SGD|S000005723 MCA1 "Ca2+-dependent cysteine protease" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 94/244 (38%), Positives = 135/244 (55%)

Query:    14 QLWLPPQAVAARCYACRSVTSFPSSSQRWAQVYGSVSQPHHNVVTIVPSNYVAAGPGNGK 73
             Q + PP       Y  R V   P   Q  A+    +S  ++N   +  SN          
Sbjct:    57 QQYAPPPGPPPMAYN-RPVYPPPQFQQEQAKA--QLSNGYNNP-NVNASNMYGPPQNMSL 112

Query:    74 YPRQGCNNYYIDQPRPAWSPPPVYGRKKALLCGVTYNDTNYMLTGSINDVKSMWFLLVRM 133
              P Q       DQP   +      GR+KAL+ G+ Y  +   L G IND  +++  L   
Sbjct:   113 PPPQTQTIQGTDQP---YQYSQCTGRRKALIIGINYIGSKNQLRGCINDAHNIFNFLTNG 169

Query:   134 LGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGHGSRQKDYNK 193
              G+ SD +VILT+++ +  R+PT+ N+  AM+WL +D QP DSL  HYSGHG + +D + 
Sbjct:   170 YGYSSDDIVILTDDQNDLVRVPTRANMIRAMQWLVKDAQPNDSLFLHYSGHGGQTEDLDG 229

Query:   194 DELDGFDETICPLDHETEGPIIDDEINATIVRPLPRGAKLHAIIDSCYSGTVLDLPFVCK 253
             DE DG D+ I P+D ET+GPIIDDE++  +V+PL +G +L A+ DSC+SGTVLDLP+   
Sbjct:   230 DEEDGMDDVIYPVDFETQGPIIDDEMHDIMVKPLQQGVRLTALFDSCHSGTVLDLPYTYS 289

Query:   254 INGV 257
               G+
Sbjct:   290 TKGI 293

GO:0006915 "apoptotic process" evidence=IEA;IMP;IDA

GO:0004198 "calcium-dependent cysteine-type endopeptidase activity" evidence=IMP;IDA

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IMP

CGD|CAL0003470 MCA1 [Candida albicans (taxid:5476)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 87/194 (44%), Positives = 120/194 (61%)

Query:    70 GNGKYPRQGCNNYYIDQPRPAWSPPPVYGRKKALLCGVTYNDTNYMLTGSINDVKSM-WF 128
             G+G Y R   ++         +      GRKKALL G+ Y  T   L G INDV ++  F
Sbjct:   118 GSGHYSRPPTDSQSFGVENYNYQYSNCSGRKKALLIGINYIGTKNELRGPINDVNNVEQF 177

Query:   129 LLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGHGSRQ 188
             LL    G+ SD +V LT++++    IPT+QNI  A++WL +D +P D+L FHYSGHG + 
Sbjct:   178 LLAN--GYSSDNIVKLTDDQRVQRAIPTRQNILDAIQWLVKDARPNDALFFHYSGHGGQT 235

Query:   189 KD----Y-NKDELDGFDETICPLDHETEGPIIDDEINATIVRPLPRGAKLHAIIDSCYSG 243
             +D    Y N DE DG+DE I PLD ET G IIDD ++  +V+ LP+G +L A+ DSC+SG
Sbjct:   236 EDQPDEYGNYDEDDGYDEVIYPLDFETNGFIIDDLLHTMMVKTLPQGCRLTALFDSCHSG 295

Query:   244 TVLDLPFVCKINGV 257
             +VLDLP++    GV
Sbjct:   296 SVLDLPYMYSTKGV 309

GO:0006915 "apoptotic process" evidence=IMP

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0070887 "cellular response to chemical stimulus" evidence=IEP

GO:0033554 "cellular response to stress" evidence=IEA

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IEA

UNIPROTKB|Q5ANA8 MCA1 "Metacaspase-1" [Candida albicans SC5314 (taxid:237561)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 87/194 (44%), Positives = 120/194 (61%)

Query:    70 GNGKYPRQGCNNYYIDQPRPAWSPPPVYGRKKALLCGVTYNDTNYMLTGSINDVKSM-WF 128
             G+G Y R   ++         +      GRKKALL G+ Y  T   L G INDV ++  F
Sbjct:   118 GSGHYSRPPTDSQSFGVENYNYQYSNCSGRKKALLIGINYIGTKNELRGPINDVNNVEQF 177

Query:   129 LLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGHGSRQ 188
             LL    G+ SD +V LT++++    IPT+QNI  A++WL +D +P D+L FHYSGHG + 
Sbjct:   178 LLAN--GYSSDNIVKLTDDQRVQRAIPTRQNILDAIQWLVKDARPNDALFFHYSGHGGQT 235

Query:   189 KD----Y-NKDELDGFDETICPLDHETEGPIIDDEINATIVRPLPRGAKLHAIIDSCYSG 243
             +D    Y N DE DG+DE I PLD ET G IIDD ++  +V+ LP+G +L A+ DSC+SG
Sbjct:   236 EDQPDEYGNYDEDDGYDEVIYPLDFETNGFIIDDLLHTMMVKTLPQGCRLTALFDSCHSG 295

Query:   244 TVLDLPFVCKINGV 257
             +VLDLP++    GV
Sbjct:   296 SVLDLPYMYSTKGV 309

GO:0006915 "apoptotic process" evidence=IMP

GO:0070887 "cellular response to chemical stimulus" evidence=IEP

UNIPROTKB|A4QTY2 MCA1 "Metacaspase-1" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 81/199 (40%), Positives = 118/199 (59%)

Query:    61 PSNYVAAGPGNGKY-PRQGCNNYYIDQPRP-AWSPPPVYGRKKALLCGVTYNDTNYMLTG 118
             P +   AGP +  + P QG   +    P   A+      G++KALL G+ Y      L G
Sbjct:    61 PQDGSRAGPSDQAHQPPQGMQQFGHGAPSDYAFQYSQCTGKRKALLIGINYFGQEGELRG 120

Query:   119 SINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLV 178
              INDV+++   L+    +  + +V+LT++ ++P   PT+ NI  AM WL +  QP DSL 
Sbjct:   121 CINDVRNLSNFLMEFYQYRREDMVLLTDDAQDPMSQPTRDNIVRAMHWLVEGAQPNDSLF 180

Query:   179 FHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVRPLPRGAKLHAIID 238
             FHYSGHG + +D + DE DG+DE I P+D    G I+DD+++  +V+PL  G +L AI D
Sbjct:   181 FHYSGHGGQTEDLDGDEDDGYDEVIYPVDFRANGHIVDDDMHLWMVQPLQAGVRLTAIFD 240

Query:   239 SCYSGTVLDLPFVCKINGV 257
             SC+SGT LDLP+V   +GV
Sbjct:   241 SCHSGTALDLPYVYSTSGV 259

GO:0005575 "cellular_component" evidence=ND

ASPGD|ASPL0000043471 AN2503 [Emericella nidulans (taxid:162425)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 73/160 (45%), Positives = 101/160 (63%)

Query:    98 GRKKALLCGVTYNDTNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTK 157
             GR++ALL G+ Y      L G INDV ++   L    G+  + +VILT++++NP  +PTK
Sbjct:   119 GRRRALLIGINYFGQPNQLQGCINDVTNVSTFLAERYGYRREDMVILTDDQQNPKSLPTK 178

Query:   158 QNIRTAMRWLAQDCQPGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDD 217
              NI  AM+WL       DSL  H+SGHG R  D + DE DGFD+ I P+D+   G I+DD
Sbjct:   179 ANILRAMQWLVNGAVANDSLFIHFSGHGGRTPDLDGDEDDGFDDVIYPVDYRVAGHIVDD 238

Query:   218 EINATIVRPLPRGAKLHAIIDSCYSGTVLDLPFVCKINGV 257
             E++  +VRPL  G +L A+ DSC+SGT LDLP+V    G+
Sbjct:   239 EMHDIMVRPLQPGVRLTAVFDSCHSGTALDLPYVYSTQGI 278

GO:0005575 "cellular_component" evidence=ND

GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0034976 "response to endoplasmic reticulum stress" evidence=IEA

TAIR|locus:2207350 MC4 "metacaspase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 3.3e-21, P = 3.3e-21
 Identities = 57/149 (38%), Positives = 85/149 (57%)

Query:   100 KKALLCGVTYNDTNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQN 159
             KKA+L G+ Y  T   L G +NDV+ M+  LV   GF  + + +L + +++  + PT +N
Sbjct:     3 KKAVLIGINYPGTKAELRGCVNDVRRMYKCLVERYGFSEENITVLIDTDESSTQ-PTGKN 61

Query:   160 IRTAMRWLAQDCQPGDSLVFHYSGHGSR-QKDYNKDELDGFDETICPLDHETEGPIIDDE 218
             IR A+  L +    GD LV HYSGHG+R   +  +D+  GFDE I P D      I DD+
Sbjct:    62 IRRALADLVESADSGDVLVVHYSGHGTRLPAETGEDDDTGFDECIVPCDMNL---ITDDD 118

Query:   219 INATIVRPLPRGAKLHAIIDSCYSGTVLD 247
                 +V  +P G ++  I DSC+SG ++D
Sbjct:   119 FR-DLVDKVPPGCRMTIISDSCHSGGLID 146

GO:0005576 "extracellular region" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0004197 "cysteine-type endopeptidase activity" evidence=IDA

GO:0016540 "protein autoprocessing" evidence=IDA

GO:0042802 "identical protein binding" evidence=IPI

GO:0043068 "positive regulation of programmed cell death" evidence=IMP;IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006816 "calcium ion transport" evidence=RCA

GO:0006970 "response to osmotic stress" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0007033 "vacuole organization" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.22	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	269
pfam00656	228	pfam00656, Peptidase_C14, Caspase domain	6e-32

>gnl|CDD|216047 pfam00656, Peptidase_C14, Caspase domain

 Score =  117 bits (294), Expect = 6e-32
 Identities = 47/153 (30%), Positives = 62/153 (40%), Gaps = 25/153 (16%)

Query: 100 KKALLCGVTYNDTNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQN 159
             AL+ G  Y      L G  ND +++  LL R LGF  +            +   T + 
Sbjct: 1   GLALIIGNNYFGHAAPLRGCDNDAEALAKLLQR-LGFEVEV-----------FDDLTAEE 48

Query: 160 IRTAMRWLAQDCQPGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEI 219
           IR A+R  A    PGDS V  YSGHG + + Y      G D  + P+D       +DD  
Sbjct: 49  IRRALREFAARADPGDSFVVVYSGHGVQGEVY------GGDGYLVPVDA------LDDVF 96

Query: 220 NATIVRPLPRGAKLHAIIDSCYSGTVLDLPFVC 252
           N      L    KL  IID+C  G + D     
Sbjct: 97  NGLNCPSLKGKPKL-FIIDACRGGPLDDGVKSD 128

Length = 228

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	269
KOG1546	362	consensus Metacaspase involved in regulation of ap	100.0
PF00656	248	Peptidase_C14: Caspase domain; InterPro: IPR011600	99.93
cd00032	243	CASc Caspase, interleukin-1 beta converting enzyme	99.41
smart00115	241	CASc Caspase, interleukin-1 beta converting enzyme	99.35
PF01650	256	Peptidase_C13: Peptidase C13 family; InterPro: IPR	99.25
COG4249	380	Uncharacterized protein containing caspase domain	98.96
TIGR01053	31	LSD1 zinc finger domain, LSD1 subclass. This model	98.87
PF14538	154	Raptor_N: Raptor N-terminal CASPase like domain	98.43
PF06943	25	zf-LSD1: LSD1 zinc finger; InterPro: IPR005735 Zin	98.42
KOG1348	477	consensus Asparaginyl peptidases [Posttranslationa	98.13
KOG1349	309	consensus Gpi-anchor transamidase [Posttranslation	97.63
PF12770	287	CHAT: CHAT domain	97.24
COG5206	382	GPI8 Glycosylphosphatidylinositol transamidase (GP	97.05
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	96.14
COG4249	380	Uncharacterized protein containing caspase domain	95.66
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	95.44
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	94.96
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	94.05
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	93.48
COG1996	49	RPC10 DNA-directed RNA polymerase, subunit RPC10 (	90.3
PF03415	397	Peptidase_C11: Clostripain family This family belo	89.48
PF09297	32	zf-NADH-PPase: NADH pyrophosphatase zinc ribbon do	84.44
COG1791	181	Uncharacterized conserved protein, contains double	82.95
COG4995	420	Uncharacterized protein conserved in bacteria [Fun	81.91
PF10122	51	Mu-like_Com: Mu-like prophage protein Com; InterPr	81.73
PF04810	40	zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro:	80.52

>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.7e-62  Score=448.92  Aligned_cols=219  Identities=47%  Similarity=0.846  Sum_probs=198.4

Q ss_pred             cccccCCCCCCceecCCCCceeecccccceeeccCCCcccccccCCcCCCCccccccCCCCCCCCCCCCCCCCCCCCCCC
Q 024329            3 SRVERCSGCGRQLWLPPQAVAARCYACRSVTSFPSSSQRWAQVYGSVSQPHHNVVTIVPSNYVAAGPGNGKYPRQGCNNY   82 (269)
Q Consensus         3 ~~~~~c~~c~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (269)
                      .++++|+ |++++++||||+. ||+.||+||+++.+                  +-.+||...++++    |        
T Consensus         2 ~~~~~~~-~~~p~~~pp~ar~-q~~~~~~~~~~~~~------------------~~~ppP~~~~~~~----P--------   49 (362)
T KOG1546|consen    2 NNLVGCN-CQRPMAPPPGARY-QCAGCHAVTQIAQP------------------RIQPPPQPSSYPN----P--------   49 (362)
T ss_pred             CccccCC-CCCCCCCCCCCcc-cccccceeeeeccc------------------CcCCCCCCCCCCC----C--------
Confidence            3689998 9999999999999 99999999999954                  1112332222111    1        


Q ss_pred             CCCCCCCCCCCCCCCCceEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHH
Q 024329           83 YIDQPRPAWSPPPVYGRKKALLCGVTYNDTNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRT  162 (269)
Q Consensus        83 ~~~~~~~~~~~p~~~~~k~ALlIGInY~~~~~~L~g~~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~  162 (269)
                         +|.|+.++|...+||+||||||||.++..+|+||+|||.+|+++|+++|||++++|++|||++.++.++||++||++
T Consensus        50 ---pPq~~~~~~~~~gkrrAvLiGINY~gTk~ELrGCINDv~~M~~~Lv~rfGFs~ddI~~LtDt~~s~~~~PT~~Nir~  126 (362)
T KOG1546|consen   50 ---PPQPPYQYPQMAGKRRAVLIGINYPGTKNELRGCINDVHRMRKLLVERFGFSEDDILMLTDTDESPVRIPTGKNIRR  126 (362)
T ss_pred             ---CCCCCCCCccccccceEEEEeecCCCcHHHHhhhHHHHHHHHHHHHHhhCCChhheEEEecCCCcccccCcHHHHHH
Confidence               12345577888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCEEEEEEeccccccCCCCCCCCCCCcceeeccCCCCCCCChHHHHHHHHhccCCCCCeEEEEEeCCCC
Q 024329          163 AMRWLAQDCQPGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVRPLPRGAKLHAIIDSCYS  242 (269)
Q Consensus       163 aL~~L~~~~~~gD~lvfYFSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~~deL~~~L~~~l~~g~~l~vIlD~C~S  242 (269)
                      ||+||++.+++||+|||||||||.+.++.+|||.|||||+|+|.|++.+|.|.+||+++.|++++|+|+++++|+|+|||
T Consensus       127 Al~wLV~~aq~gD~LvfHYSGHGtr~~~~~gDe~dG~DE~I~P~D~~t~G~iIdDe~~r~lV~plp~G~~lt~I~DSCHS  206 (362)
T KOG1546|consen  127 ALRWLVESAQPGDSLVFHYSGHGTRQPDTNGDEVDGYDETIVPCDHNTQGPIIDDEIFRILVRPLPKGCKLTAISDSCHS  206 (362)
T ss_pred             HHHHHHhcCCCCCEEEEEecCCCCcCCCCCCCCCCCCcceeecccccccccccchHHHHHHHhccCCCceEEEEeecccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcccccccc
Q 024329          243 GTVLDLPFVCKING  256 (269)
Q Consensus       243 G~~~dlp~~~~~~~  256 (269)
                      |+++|+||+|++++
T Consensus       207 GgliDlp~i~~~~~  220 (362)
T KOG1546|consen  207 GGLIDLPEIERTKG  220 (362)
T ss_pred             CCcccchhheeccc
Confidence            99999999999994

>PF00656 Peptidase_C14: Caspase domain; InterPro: IPR011600 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.93  E-value=1.3e-26  Score=204.54  Aligned_cols=138  Identities=38%  Similarity=0.615  Sum_probs=114.2

Q ss_pred             eEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEE
Q 024329          100 KKALLCGVTYNDTNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVF  179 (269)
Q Consensus       100 k~ALlIGInY~~~~~~L~g~~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~~gD~lvf  179 (269)
                      |+||||||++|+...+|+|+++|++.|+++| +++||+.++| +..+        ||+++|+++|+++++..+++|.++|
T Consensus         1 ~~AliIg~~~y~~~~~L~~~~~D~~~~~~~L-~~~gf~~~~~-l~~~--------~t~~~i~~~l~~l~~~~~~~D~~~~   70 (248)
T PF00656_consen    1 KRALIIGVNYYQNPPPLPGAVNDAEAMAEAL-EKLGFDVENI-LIDN--------ATRANILKALRELLQRAQPGDSVVF   70 (248)
T ss_dssp             EEEEEEEESSTSSTCHCTTHHHHHHHHHHHH-HHTTEEEEEE-EEES--------SSHHHHHHHHHHHHTSGGTCSEEEE
T ss_pred             CEEEEEEeeCCCCCCCCCCHHHHHHHHHHHH-HHcCCceeec-cccc--------hHHHHHHHHHhhhhccCCCCCeeEE
Confidence            6999999997766699999999999999999 7899998887 3333        8999999999999999889999999


Q ss_pred             EEeccccccCCCCCCCCCCCcceeeccCCCCCCCChHHHHHHHHhccCCCCCeEEEEEeCCCCCCCCCCccc
Q 024329          180 HYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVRPLPRGAKLHAIIDSCYSGTVLDLPFV  251 (269)
Q Consensus       180 YFSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~~deL~~~L~~~l~~g~~l~vIlD~C~SG~~~dlp~~  251 (269)
                      ||||||.+..+..+++..++|++++|.|..   .+.+++|.+++.+.++...+ ++||||||||.+.+....
T Consensus        71 yfsGHG~~~~~~~~~~~~~~d~~~~~~d~~---~~~~~~l~~~~~~~~~~~~k-~~ilD~C~sg~~~~~~~~  138 (248)
T PF00656_consen   71 YFSGHGIQVDGEGGDEDSGYDGYLLPLDAN---LILDDELRDLLCKSLPKKPK-LFILDCCRSGGFIDGLSS  138 (248)
T ss_dssp             EEESEEETETTCCSTEEEETSSEEEEHHHH---EEHHHHTSTTTTGGGTTS-E-EEEEESESSSBTBCEEEE
T ss_pred             EEeccccccCCccCcccccccceeeecchh---hhHHHHHhhhhhhhccCCcc-EEeeccccCCccCCcccc
Confidence            999999887665445566788899988753   56777887776554665567 899999999998875443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of sequences represent the p20 (20kDa) and p10 (10kDa) subunits of caspases, which together form the catalytic domain of the caspase and are derived from the p45 (45 kDa) precursor (IPR002398 from INTERPRO) []. Caspases (Cysteine-dependent ASPartyl-specific proteASE) are cysteine peptidases that belong to the MEROPS peptidase family C14 (caspase family, clan CD) based on the architecture of their catalytic dyad or triad []. Caspases are tightly regulated proteins that require zymogen activation to become active, and once active can be regulated by caspase inhibitors. Activated caspases act as cysteine proteases, using the sulphydryl group of a cysteine side chain for catalysing peptide bond cleavage at aspartyl residues in their substrates. The catalytic cysteine and histidine residues are on the p20 subunit after cleavage of the p45 precursor. Caspases are mainly involved in mediating cell death (apoptosis) [, , ]. They have two main roles within the apoptosis cascade: as initiators that trigger the cell death process, and as effectors of the process itself. Caspase-mediated apoptosis follows two main pathways, one extrinsic and the other intrinsic or mitochondrial-mediated. The extrinsic pathway involves the stimulation of various TNF (tumour necrosis factor) cell surface receptors on cells targeted to die by various TNF cytokines that are produced by cells such as cytotoxic T cells. The activated receptor transmits the signal to the cytoplasm by recruiting FADD, which forms a death-inducing signalling complex (DISC) with caspase-8. The subsequent activation of caspase-8 initiates the apoptosis cascade involving caspases 3, 4, 6, 7, 9 and 10. The intrinsic pathway arises from signals that originate within the cell as a consequence of cellular stress or DNA damage. The stimulation or inhibition of different Bcl-2 family receptors results in the leakage of cytochrome c from the mitochondria, and the formation of an apoptosome composed of cytochrome c, Apaf1 and caspase-9. The subsequent activation of caspase-9 initiates the apoptosis cascade involving caspases 3 and 7, among others. At the end of the cascade, caspases act on a variety of signal transduction proteins, cytoskeletal and nuclear proteins, chromatin-modifying proteins, DNA repair proteins and endonucleases that destroy the cell by disintegrating its contents, including its DNA. The different caspases have different domain architectures depending upon where they fit into the apoptosis cascades, however they all carry the catalytic p10 and p20 subunits. Caspases can have roles other than in apoptosis, such as caspase-1 (interleukin-1 beta convertase) (3.4.22.36 from EC), which is involved in the inflammatory process. The activation of apoptosis can sometimes lead to caspase-1 activation, providing a link between apoptosis and inflammation, such as during the targeting of infected cells. Caspases may also be involved in cell differentiation [].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 1M72_C 2NN3_C 3V4L_A 3IBF_B 2QLF_D 2QLB_C 3IBC_B 2QL9_A 3R5K_B 3H1P_A ....

>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis)

Probab=99.41  E-value=4e-12  Score=114.65  Aligned_cols=121  Identities=22%  Similarity=0.254  Sum_probs=93.6

Q ss_pred             CCceEEEEEeeC-CCCCCCCCCChHHHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHH-hCCCC
Q 024329           97 YGRKKALLCGVT-YNDTNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQ-DCQPG  174 (269)
Q Consensus        97 ~~~k~ALlIGIn-Y~~~~~~L~g~~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~-~~~~g  174 (269)
                      .++++|||||+. |......++|+.+|++.|+++|+ .+||.   |.+..|        +|+++|+++|+++.+ ..+..
T Consensus         7 ~~~g~aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~-~lgF~---V~~~~n--------lt~~~~~~~l~~f~~~~~~~~   74 (243)
T cd00032           7 KRRGLALIINNENFDKGLKDRDGTDVDAENLTKLFE-SLGYE---VEVKNN--------LTAEEILEELKEFASPDHSDS   74 (243)
T ss_pred             CCCCEEEEEechhcCCCCCCCCChHHHHHHHHHHHH-HCCCE---EEEeCC--------CCHHHHHHHHHHHHhccCCCC
Confidence            477899999998 65435689999999999999996 58995   566666        699999999999985 67889


Q ss_pred             CEEEEEEeccccccCCCCCCCCCCCcceeeccCCCCCCCChHHHHHHHHhc-cCC--CCCeEEEEEeCCCCCCC
Q 024329          175 DSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVR-PLP--RGAKLHAIIDSCYSGTV  245 (269)
Q Consensus       175 D~lvfYFSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~~deL~~~L~~-~l~--~g~~l~vIlD~C~SG~~  245 (269)
                      |.++|||+|||..             .+|++.|.   ..+.-++|.+.+.. ..+  .++--++|||||+...+
T Consensus        75 d~~v~~~~sHG~~-------------~~l~~~D~---~~v~l~~i~~~f~~~~~~sl~~kPKl~~iqACRg~~~  132 (243)
T cd00032          75 DSFVCVILSHGEE-------------GGIYGTDG---DVVPIDEITSLFNGDNCPSLAGKPKLFFIQACRGDEL  132 (243)
T ss_pred             CeeEEEECCCCCC-------------CEEEEecC---cEEEHHHHHHhhccCCCccccCCCcEEEEECCCCCcC
Confidence            9999999999975             26888885   25566677776631 111  12323699999996654

Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.

>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues

Probab=99.35  E-value=1.4e-11  Score=111.20  Aligned_cols=117  Identities=23%  Similarity=0.285  Sum_probs=90.4

Q ss_pred             CCceEEEEEeeC-CCCCCCCCCChHHHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHh--CCC
Q 024329           97 YGRKKALLCGVT-YNDTNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQD--CQP  173 (269)
Q Consensus        97 ~~~k~ALlIGIn-Y~~~~~~L~g~~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~--~~~  173 (269)
                      .++.+|||||+. |. ...+++|+.+|++.|+++|+ ++||.   |.+..|        .|+++|+++|+++.+.  .+.
T Consensus         6 ~p~g~alII~n~~f~-~~~~r~g~~~D~~~l~~~f~-~lgF~---V~~~~d--------lt~~em~~~l~~~~~~~~~~~   72 (241)
T smart00115        6 KPRGLALIINNENFH-SLPRRNGTDVDAENLTELFQ-SLGYE---VHVKNN--------LTAEEMLEELKEFAERPEHSD   72 (241)
T ss_pred             CCCcEEEEEECccCC-CCcCCCCcHHHHHHHHHHHH-HCCCE---EEEecC--------CCHHHHHHHHHHHHhccccCC
Confidence            357899999998 54 36689999999999999996 59996   666666        6999999999999875  457


Q ss_pred             CCEEEEEEeccccccCCCCCCCCCCCcceeeccCCCCCCCChHHHHHHHHhc----cCCCCCeEEEEEeCCCCC
Q 024329          174 GDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVR----PLPRGAKLHAIIDSCYSG  243 (269)
Q Consensus       174 gD~lvfYFSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~~deL~~~L~~----~l~~g~~l~vIlD~C~SG  243 (269)
                      .|.++|||.|||..             .+|++.|..   .+.-++|.+.+..    .+. ++--++|||||+..
T Consensus        73 ~d~~v~~~~sHG~~-------------~~l~~~D~~---~v~l~~i~~~f~~~~c~~L~-~kPKlffiqACRg~  129 (241)
T smart00115       73 SDSFVCVLLSHGEE-------------GGIYGTDHS---PLPLDEIFSLFNGDNCPSLA-GKPKLFFIQACRGD  129 (241)
T ss_pred             CCEEEEEEcCCCCC-------------CeEEEecCC---EEEHHHHHHhccccCChhhc-CCCcEEEEeCCCCC
Confidence            89999999999963             268898853   4566777776621    121 22235999999854

Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.

>PF01650 Peptidase_C13: Peptidase C13 family; InterPro: IPR001096 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.25  E-value=6.3e-11  Score=108.29  Aligned_cols=127  Identities=20%  Similarity=0.343  Sum_probs=87.9

Q ss_pred             eEEEEEeeC--CCCCCCCCCChHHHHHHHHHHHHHhhCCCCcceEEecCCCC-----CC---------------------
Q 024329          100 KKALLCGVT--YNDTNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEK-----NP---------------------  151 (269)
Q Consensus       100 k~ALlIGIn--Y~~~~~~L~g~~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~-----~~---------------------  151 (269)
                      +|||||+-+  |.+-++     ..|+-.|..+|++ +|++.+||+++..++.     +|                     
T Consensus         1 ~wAvlvagS~~~~NYRh-----~ad~~~~Y~~l~~-~G~~~~~Iil~~~dd~a~~~~Np~~g~i~~~~~~~n~y~~~~iD   74 (256)
T PF01650_consen    1 NWAVLVAGSNGWFNYRH-----QADVCHAYQLLKR-NGIPDENIILMMYDDIACNPRNPFPGKIFNDPDGTNVYKGVEID   74 (256)
T ss_pred             CEEEEEeccCCceeeeE-----ehHHHHHHHHHHH-cCCCCceEEEEecCCccchhhCCCCceEEeCCCcccccCCcccc
Confidence            599999876  333222     2799999999986 9999999987764431     10                     


Q ss_pred             --CCCccHHHHHHHHHHHH-------HhCCCCCEEEEEEeccccccCCCCCCCCCCCcceeeccCCCCCCCChHHHHHHH
Q 024329          152 --YRIPTKQNIRTAMRWLA-------QDCQPGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINAT  222 (269)
Q Consensus       152 --~~~pTk~nI~~aL~~L~-------~~~~~gD~lvfYFSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~~deL~~~  222 (269)
                        -...|.+++++.|.--.       -...++|.|||||+|||....            .-+|    ....|+.++|.++
T Consensus        75 Y~g~~v~~~~fl~vL~G~~~~~~~kvl~s~~~D~vfiy~~~HG~~~~------------l~~~----~~~~l~~~~L~~~  138 (256)
T PF01650_consen   75 YRGEDVTPENFLNVLTGDKSVPSGKVLNSTENDNVFIYFTGHGGPGF------------LKFP----DGEELTADDLADA  138 (256)
T ss_pred             ccccccCHHHHHHHhcCCCCCCccccccCCCCCeEEEEEeccCCCCc------------ccCC----CcccccHHHHHHH
Confidence              12456677777665111       145789999999999999631            0112    2346889999999


Q ss_pred             HhccCCCC--CeEEEEEeCCCCCCCCCC
Q 024329          223 IVRPLPRG--AKLHAIIDSCYSGTVLDL  248 (269)
Q Consensus       223 L~~~l~~g--~~l~vIlD~C~SG~~~dl  248 (269)
                      |...-.+.  +++++++|||+||++++.
T Consensus       139 L~~m~~~~~y~~lv~~veaC~SGs~~~~  166 (256)
T PF01650_consen  139 LDKMHEKKRYKKLVFVVEACYSGSFFEG  166 (256)
T ss_pred             HHHHHhhCCcceEEEEEecccccchhhc
Confidence            85432222  358999999999999876

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C13 (legumain family, clan CD). A type example is legumain from Canavalia ensiformis (Jack bean, Horse bean). The blood fluke parasite Schistosoma mansoni has two cysteine proteases in its digestive tract, one a cathepsin B-like protease, the other termed hemoglobinase [, ]. The latter has been hard to purify, free of cathepsin B, and expressed forms in Escherichia coli prove to be inactive, suggesting that hemoglobinase may act in association with cathepsin B [, ]. Plant vacuolar processing enzyme and legumain from legumes [] have been shown to have sequence and functional similarity to hemoglobinase. The catalytic residues of the family are currently unknown, but sequence alignments reveal one totally conserved cysteine and two totally conserved histidines.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis

>COG4249 Uncharacterized protein containing caspase domain [General function prediction only]

Probab=98.96  E-value=2.3e-09  Score=102.99  Aligned_cols=85  Identities=24%  Similarity=0.468  Sum_probs=65.4

Q ss_pred             CccHHHHHHHHHHHHHhCCCCCEEEEEEeccccccCCCCCCCCCCCcceeeccCCCC-------CCCChHHHHHHHHhcc
Q 024329          154 IPTKQNIRTAMRWLAQDCQPGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHET-------EGPIIDDEINATIVRP  226 (269)
Q Consensus       154 ~pTk~nI~~aL~~L~~~~~~gD~lvfYFSGHG~~~~d~~gde~dG~de~L~p~D~~~-------~g~I~~deL~~~L~~~  226 (269)
                      .|++..|+..|..+.+.+...|+.+|||||||.... .+     |- .+|++.|.++       ++.+...++.+++ ..
T Consensus       113 ~p~~~~V~~~~lD~~~~~~~~d~~~~~fsG~g~~~~-~d-----~~-~~lia~~t~p~~~a~~~~~~~s~~~~~~~~-~~  184 (380)
T COG4249         113 LPARTKVRRVLLDAARDNPPADTILFFFSGHGATPG-AD-----GR-AYLIAFDTRPGAVAYDGEGGISPYSVAQAL-HL  184 (380)
T ss_pred             CCchhHHHHHHHHHhhcCchhhhhhheeeccccccC-CC-----Cc-eeEEeecCChhhhcccCCCcccHHHHHHHH-Hh
Confidence            788999999999999999999999999999999853 22     22 2899999863       4566666665544 22


Q ss_pred             CCCCCeEEEEEeCCCCCCCCC
Q 024329          227 LPRGAKLHAIIDSCYSGTVLD  247 (269)
Q Consensus       227 l~~g~~l~vIlD~C~SG~~~d  247 (269)
                      . ...+.+.++|+||+|.++.
T Consensus       185 ~-~~~~ql~~~d~~~~~~~~~  204 (380)
T COG4249         185 S-EPGNQLVDLDACVRGDVFK  204 (380)
T ss_pred             c-cCCceeehhhhhcchhhhc
Confidence            2 3345679999999999864

>TIGR01053 LSD1 zinc finger domain, LSD1 subclass

Probab=98.87  E-value=1.4e-09  Score=68.53  Aligned_cols=31  Identities=32%  Similarity=0.670  Sum_probs=29.2

Q ss_pred             cccCCCCCCceecCCCCceeecccccceeec
Q 024329            5 VERCSGCGRQLWLPPQAVAARCYACRSVTSF   35 (269)
Q Consensus         5 ~~~c~~c~~~~~~~~~~~~~~c~~c~~~~~~   35 (269)
                      .++|++|++.|+.|+||+++||+.|+.||.|
T Consensus         1 q~~C~~C~t~L~yP~gA~~vrCs~C~~vt~v   31 (31)
T TIGR01053         1 QVVCGGCRTLLMYPRGASSVRCALCQTVNLV   31 (31)
T ss_pred             CcCcCCCCcEeecCCCCCeEECCCCCeEecC
Confidence            4789999999999999999999999999975

This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC

>PF14538 Raptor_N: Raptor N-terminal CASPase like domain

Probab=98.43  E-value=1.4e-06  Score=74.15  Aligned_cols=105  Identities=16%  Similarity=0.315  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHHHhh-CCCC-cceEEecCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEeccccccCCCCCCCCC
Q 024329          120 INDVKSMWFLLVRML-GFPS-DCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGHGSRQKDYNKDELD  197 (269)
Q Consensus       120 ~nDA~~m~~~L~~~~-Gf~~-~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~~gD~lvfYFSGHG~~~~d~~gde~d  197 (269)
                      .+-.+.+.+.|..+| .+.. .....+.|        ||.+++++.+..+.+.++. +.|+|||-|||...+..+|+   
T Consensus        43 ~~~~~~I~~~l~~qY~~~~~~~~~~~~~d--------pt~e~~~~~~~~~R~~a~~-~RvLFHYnGhGvP~Pt~~Ge---  110 (154)
T PF14538_consen   43 SKASEEIGKNLQSQYESWQPRARYKQSLD--------PTVEDLKRLCQSLRRNAKD-ERVLFHYNGHGVPRPTENGE---  110 (154)
T ss_pred             hhHHHHHHHHHHHHHHHhCccCcEEEecC--------CCHHHHHHHHHHHHhhCCC-ceEEEEECCCCCCCCCCCCe---
Confidence            355666788887655 4432 23444445        8999999999999988775 99999999999998665552   


Q ss_pred             CCcceeeccCCCCCC--CChHHHHHHHHhccCCCCCeEEEEEeCCCCCCCCC
Q 024329          198 GFDETICPLDHETEG--PIIDDEINATIVRPLPRGAKLHAIIDSCYSGTVLD  247 (269)
Q Consensus       198 G~de~L~p~D~~~~g--~I~~deL~~~L~~~l~~g~~l~vIlD~C~SG~~~d  247 (269)
                           |...|-....  .++-.||.+|+      |.-.++|+||.++|.+++
T Consensus       111 -----Iw~f~~~~tqyip~si~dL~~~l------g~Psi~V~DC~~AG~il~  151 (154)
T PF14538_consen  111 -----IWVFNKNYTQYIPLSIYDLQSWL------GSPSIYVFDCSNAGSILN  151 (154)
T ss_pred             -----EEEEcCCCCcceEEEHHHHHHhc------CCCEEEEEECCcHHHHHH
Confidence                 2233322222  45677887776      345789999999998865

>PF06943 zf-LSD1: LSD1 zinc finger; InterPro: IPR005735 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.42  E-value=1.4e-07  Score=56.48  Aligned_cols=25  Identities=40%  Similarity=0.922  Sum_probs=24.0

Q ss_pred             CCCCCCceecCCCCceeecccccce
Q 024329            8 CSGCGRQLWLPPQAVAARCYACRSV   32 (269)
Q Consensus         8 c~~c~~~~~~~~~~~~~~c~~c~~~   32 (269)
                      |++|++.|..|+||+++||+.|+.|
T Consensus         1 C~~Cr~~L~yp~GA~sVrCa~C~~V   25 (25)
T PF06943_consen    1 CGGCRTLLMYPRGAPSVRCACCHTV   25 (25)
T ss_pred             CCCCCceEEcCCCCCCeECCccCcC
Confidence            8999999999999999999999976

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC []. This domain may play a role in the regulation of transcription, via either repression of a prodeath pathway or activation of an antideath pathway, in response to signals emanating from cells undergoing pathogen-induced hypersensitive cell death. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].

>KOG1348 consensus Asparaginyl peptidases [Posttranslational modification, protein turnover, chaperones]

Probab=98.13  E-value=3.3e-05  Score=73.58  Aligned_cols=131  Identities=19%  Similarity=0.290  Sum_probs=89.2

Q ss_pred             CCCCceEEEEEee-C-CCCCCCCCCChHHHHHHHHHHHHHhhCCCCcceEEecCCC-----CC-----------------
Q 024329           95 PVYGRKKALLCGV-T-YNDTNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEE-----KN-----------------  150 (269)
Q Consensus        95 ~~~~~k~ALlIGI-n-Y~~~~~~L~g~~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e-----~~-----------------  150 (269)
                      ...+++|||+|+- | |++.+.+     .|+---..+|+ +.|.+++||.++.-++     .+                 
T Consensus        41 ddggt~waVLVAGSngyyNYRHQ-----ADvcHAYqiLr-kgGikeEnIvv~MYDDIA~~~~NPrpG~iiN~P~G~DvY~  114 (477)
T KOG1348|consen   41 DDGGTRWAVLVAGSNGYYNYRHQ-----ADVCHAYQILR-KGGIKEENIVVMMYDDIANNEENPRPGVIINRPNGKDVYQ  114 (477)
T ss_pred             ccCceeEEEEEecCCcccchhhh-----hhHHHHHHHHH-hcCCCchhEEEEEehhhhcCCCCCCCceeecCCCchhhhc
Confidence            3447999999965 4 7765442     56666667775 5799999987765322     00                 


Q ss_pred             --C----CCCccHHHHHHHHH---HHHHh-------CCCCCEEEEEEeccccccCCCCCCCCCCCcceeeccCCCCCCCC
Q 024329          151 --P----YRIPTKQNIRTAMR---WLAQD-------CQPGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPI  214 (269)
Q Consensus       151 --~----~~~pTk~nI~~aL~---~L~~~-------~~~gD~lvfYFSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I  214 (269)
                        |    -...|-+|+++.|.   .-+++       .+|+|.+||||+-||..-             .|.-.   ..+.+
T Consensus       115 GvpkDYtg~~Vt~~Nf~aVllGd~savkGGsGKV~~SgpnDhiFiYytDHG~pG-------------vl~mP---~~~~l  178 (477)
T KOG1348|consen  115 GVPKDYTGEDVTPQNFLAVLLGDASAVKGGSGKVLKSGPNDHIFIYYTDHGGPG-------------VLGMP---TSPDL  178 (477)
T ss_pred             CCCCcccCCcCCHHHHHHHHhcccccccCCCceeeccCCCceEEEEEecCCCCc-------------eEecC---CCcch
Confidence              0    13578899998884   22222       468999999999999962             12111   12356


Q ss_pred             hHHHHHHHHhccCC--CCCeEEEEEeCCCCCCCCC
Q 024329          215 IDDEINATIVRPLP--RGAKLHAIIDSCYSGTVLD  247 (269)
Q Consensus       215 ~~deL~~~L~~~l~--~g~~l~vIlD~C~SG~~~d  247 (269)
                      ...+|++.|.+.-+  .=+++++-|.||-||++++
T Consensus       179 ~akdlnevL~kmhk~k~Y~~mvfYlEACESGSmfe  213 (477)
T KOG1348|consen  179 YAKDLNEVLKKMHKSKTYKKMVFYLEACESGSMFE  213 (477)
T ss_pred             hHHHHHHHHHHHHhccchheEEEEeeeccCcchhh
Confidence            77889998866433  2357899999999999876

>KOG1349 consensus Gpi-anchor transamidase [Posttranslational modification, protein turnover, chaperones]

Probab=97.63  E-value=0.00044  Score=63.29  Aligned_cols=144  Identities=18%  Similarity=0.301  Sum_probs=89.8

Q ss_pred             CCceEEEEEeeC--CCCCCCCCCChHHHHHHHHHHHHHhhCCCCcceEEec-CCCC----C-------------------
Q 024329           97 YGRKKALLCGVT--YNDTNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILT-EEEK----N-------------------  150 (269)
Q Consensus        97 ~~~k~ALlIGIn--Y~~~~~~L~g~~nDA~~m~~~L~~~~Gf~~~~I~lLt-d~e~----~-------------------  150 (269)
                      +.+.|||+|--|  +++.+     -+..+-.|.+.++ +.|+|.++|++.. |+.+    +                   
T Consensus        26 htnNwAVLv~tSRfwfNYR-----H~aNvl~~YrsvK-rlGipDsqIilmladd~acn~RN~~pg~Vy~n~~~~~nlygd   99 (309)
T KOG1349|consen   26 HTNNWAVLVCTSRFWFNYR-----HVANVLSVYRSVK-RLGIPDSQIILMLADDMACNSRNPRPGTVYNNENHALNLYGD   99 (309)
T ss_pred             ccCceEEEEecchhhhhHH-----HHHHHHHHHHHHH-HcCCCcccEEEEeccccccccCCCCCcceeccccccccccCC
Confidence            578899999987  33322     3455667777774 7899999976554 3321    0                   


Q ss_pred             -C---C--CCccHHHHHHHHHHHHH---------hCCCCCEEEEEEeccccccCCCCCCCCCCCcceeeccCCCCCCCCh
Q 024329          151 -P---Y--RIPTKQNIRTAMRWLAQ---------DCQPGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPII  215 (269)
Q Consensus       151 -~---~--~~pTk~nI~~aL~~L~~---------~~~~gD~lvfYFSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~  215 (269)
                       .   +  ...|-+|+++.|..-..         -..++..++||..|||.-.             +|--.|.+   .|+
T Consensus       100 ~vevdyrgyevtvEnflr~LTgR~~~~tprSKrlltDe~SNIlIYmtGHGgd~-------------FlKFqd~e---elt  163 (309)
T KOG1349|consen  100 DVEVDYRGYEVTVENFLRVLTGRHPNNTPRSKRLLTDEGSNILIYLTGHGGDG-------------FLKFQDAE---ELT  163 (309)
T ss_pred             cceeecccchhHHHHHHHHHcCCCCCCCchhhhhcccCCCcEEEEEccCCCcc-------------ceecccHH---Hhh
Confidence             0   0  23566666666642110         1345789999999999831             33333432   567


Q ss_pred             HHHHHHHHhccC--CCCCeEEEEEeCCCCCCCCC---Ccccccccceeeccc
Q 024329          216 DDEINATIVRPL--PRGAKLHAIIDSCYSGTVLD---LPFVCKINGVQMGRS  262 (269)
Q Consensus       216 ~deL~~~L~~~l--~~g~~l~vIlD~C~SG~~~d---lp~~~~~~~~~~g~~  262 (269)
                      .++|...+.+..  +.=.++++++|+|.+.++.+   .|.+-.+..+.+|..
T Consensus       164 s~dLadai~qm~e~~Ryneil~miDTCQaasly~~~~sPNVLav~SS~~ge~  215 (309)
T KOG1349|consen  164 SDDLADAIQQMWEKKRYNEILFMIDTCQAASLYERFYSPNVLAVASSLVGEP  215 (309)
T ss_pred             hHHHHHHHHHHHHhhhhceEEEEeeccchHHHHHhhcCCCeEEEeecccCCc
Confidence            778877774432  22246899999999999754   555555555555543

>PF12770 CHAT: CHAT domain

Probab=97.24  E-value=0.003  Score=57.03  Aligned_cols=112  Identities=21%  Similarity=0.339  Sum_probs=72.4

Q ss_pred             EEEeeCCCCC-------CCCCCChHHHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhCCCCC
Q 024329          103 LLCGVTYNDT-------NYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGD  175 (269)
Q Consensus       103 LlIGInY~~~-------~~~L~g~~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~~gD  175 (269)
                      ++||......       ..+|++...+++.+++.+... +     ..++...+      +|++++++.+       ...+
T Consensus        82 l~i~~p~~~~~~~~~~~~~~l~~~~~e~~~l~~~~~~~-~-----~~~~~~~~------at~~~l~~~l-------~~~~  142 (287)
T PF12770_consen   82 LVIGNPDFGGSLIRGAALSPLPGAQREADALAELLGAG-G-----LRVLVGPE------ATKDALLEAL-------ERRG  142 (287)
T ss_pred             EEEecCCCcccccccccccCchHHHHHHHHHHHHhccc-c-----eeEeeccC------CCHHHHHhhh-------ccCC
Confidence            7777653322       258899988888888887531 1     13334443      7999998888       2345


Q ss_pred             EEEEEEeccccccCCCCCCCCCCCcceeeccCCCC--CCCChHHHHHHHHhccCCCCCeEEEEEeCCCCCC
Q 024329          176 SLVFHYSGHGSRQKDYNKDELDGFDETICPLDHET--EGPIIDDEINATIVRPLPRGAKLHAIIDSCYSGT  244 (269)
Q Consensus       176 ~lvfYFSGHG~~~~d~~gde~dG~de~L~p~D~~~--~g~I~~deL~~~L~~~l~~g~~l~vIlD~C~SG~  244 (269)
                      .=+|||+|||....+..      .+..|+..+...  .+.++..+|.+ +  .++ +.+ ++||-+|+||.
T Consensus       143 ~~ilH~a~Hg~~~~~~~------~~~~l~l~~~~~~~~~~l~~~~l~~-l--~l~-~~~-lVvLsaC~s~~  202 (287)
T PF12770_consen  143 PDILHFAGHGTFDPDPP------DQSGLVLSDESGQEDGLLSAEELAQ-L--DLR-GPR-LVVLSACESAS  202 (287)
T ss_pred             CCEEEEEcccccCCCCC------CCCEEEEeccCCCCCcccCHHHHHh-h--cCC-CCC-EEEecCcCCcC
Confidence            55899999999873211      223565554332  45788888877 2  222 234 59999999994

>COG5206 GPI8 Glycosylphosphatidylinositol transamidase (GPIT), subunit GPI8 [Posttranslational modification, protein turnover, chaperones]

Probab=97.05  E-value=0.0058  Score=56.48  Aligned_cols=145  Identities=14%  Similarity=0.303  Sum_probs=89.0

Q ss_pred             CCCceEEEEEeeC--CCCCCCCCCChHHHHHHHHHHHHHhhCCCCcceEEec-CCCC---------------C-------
Q 024329           96 VYGRKKALLCGVT--YNDTNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILT-EEEK---------------N-------  150 (269)
Q Consensus        96 ~~~~k~ALlIGIn--Y~~~~~~L~g~~nDA~~m~~~L~~~~Gf~~~~I~lLt-d~e~---------------~-------  150 (269)
                      ...+.||+++.-+  +++.+.     ...+..|.+.++ +.|++..+|+++. |++.               |       
T Consensus        25 t~tnNwAvLlstSRfwfNYRH-----mANVl~~Yr~vk-rlGipDsQIilm~~dd~acnsRnlfpgsvf~N~Dra~dlyg   98 (382)
T COG5206          25 TNTNNWAVLLSTSRFWFNYRH-----MANVLVFYRVVK-RLGIPDSQIILMSYDDQACNSRNLFPGSVFNNSDRAGDLYG   98 (382)
T ss_pred             ccCCceEEEEecccceeehhh-----hhhHHHHHHHHH-HcCCCcceEEEEechhhhhhhcccCCcccccCcccccceeC
Confidence            4566899999987  343221     244666788885 6899998876554 3321               0       


Q ss_pred             -----CC--CCccHHHHHHHHHHHHHh---------CCCCCEEEEEEeccccccCCCCCCCCCCCcceeeccCCCCCCCC
Q 024329          151 -----PY--RIPTKQNIRTAMRWLAQD---------CQPGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPI  214 (269)
Q Consensus       151 -----~~--~~pTk~nI~~aL~~L~~~---------~~~gD~lvfYFSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I  214 (269)
                           ++  -.+|-+++.+-|......         ..+...++||..|||...             +|--.|++   .+
T Consensus        99 e~~eidY~gyevTve~firLLt~r~~en~p~sKrlltdE~SNIfIYmtGHGgd~-------------FlKFqdae---em  162 (382)
T COG5206          99 EDSEIDYSGYEVTVEVFIRLLTARSGENHPKSKRLLTDESSNIFIYMTGHGGDA-------------FLKFQDAE---EM  162 (382)
T ss_pred             cccccccccccchHHHHHHHHHhhccCCChhhhhhcccccCcEEEEEccCCCcc-------------ceecccHH---Hh
Confidence                 11  357888887777543311         345678999999999842             23223332   45


Q ss_pred             hHHHHHHHHhccCC--CCCeEEEEEeCCCCCCCCCCcccc---cccceeeccc
Q 024329          215 IDDEINATIVRPLP--RGAKLHAIIDSCYSGTVLDLPFVC---KINGVQMGRS  262 (269)
Q Consensus       215 ~~deL~~~L~~~l~--~g~~l~vIlD~C~SG~~~dlp~~~---~~~~~~~g~~  262 (269)
                      +.++|.+.+.+...  .-.++++++|+|...+..+.-|..   .+..+-+|.+
T Consensus       163 tseDladai~ql~~~kRyNeIlfmiDTCQAnaly~k~ysPNvLavgsSeig~s  215 (382)
T COG5206         163 TSEDLADAISQLAAKKRYNEILFMIDTCQANALYDKSYSPNVLAVGSSEIGQS  215 (382)
T ss_pred             hhHHHHHHHHHHHHhhhhceEEEEeeccccchhhhhccCCceEEEeccccCCc
Confidence            66667766643222  223589999999999987755443   3444445543

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=96.14  E-value=0.0037  Score=40.69  Aligned_cols=31  Identities=23%  Similarity=0.569  Sum_probs=26.2

Q ss_pred             ccccCCCCCCceecCC-----CCceeecccccceee
Q 024329            4 RVERCSGCGRQLWLPP-----QAVAARCYACRSVTS   34 (269)
Q Consensus         4 ~~~~c~~c~~~~~~~~-----~~~~~~c~~c~~~~~   34 (269)
                      |.+.|.+|++.+.||.     +.+.+||+.|+.+-.
T Consensus         1 M~i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~   36 (37)
T PF13719_consen    1 MIITCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR   36 (37)
T ss_pred             CEEECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence            6789999999998875     467999999997643

>COG4249 Uncharacterized protein containing caspase domain [General function prediction only]

Probab=95.66  E-value=0.0012  Score=63.96  Aligned_cols=124  Identities=27%  Similarity=0.436  Sum_probs=89.4

Q ss_pred             CceEEEEEeeC-CCCCCCCCCChHHHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhCCCCCE
Q 024329           98 GRKKALLCGVT-YNDTNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDS  176 (269)
Q Consensus        98 ~~k~ALlIGIn-Y~~~~~~L~g~~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~~gD~  176 (269)
                      .++-||+||.| |+. ...|.++.||+..|+.+|+. .||+.   +.-++        -.++.++..|+.+++.++.-|.
T Consensus         2 ~~r~alvigns~~~~-aa~l~np~~da~~~a~~L~~-iGfdv---y~~~d--------~~~~~~~~~L~~f~~da~ga~~   68 (380)
T COG4249           2 ERRVALVIGNSTYYV-AAPLANPANDAGAMALWLTA-IGFDV---YLDTD--------LPKSGLRRALRYFAEDAEGADV   68 (380)
T ss_pred             CcceEEEeecCcccc-cccCCCchhhHHHHHHHHHH-cCcee---ecccc--------cchHHHHhHHHHHHHHHHHHhH
Confidence            57899999999 554 67899999999999999974 79974   22222        2477899999999999999999


Q ss_pred             EEEEEeccccccCCCCCCCCCCCcceeeccCCCCC-------CCChHHHHHHHHhccCCCCCeE-EEEEeCCCCCCCCC
Q 024329          177 LVFHYSGHGSRQKDYNKDELDGFDETICPLDHETE-------GPIIDDEINATIVRPLPRGAKL-HAIIDSCYSGTVLD  247 (269)
Q Consensus       177 lvfYFSGHG~~~~d~~gde~dG~de~L~p~D~~~~-------g~I~~deL~~~L~~~l~~g~~l-~vIlD~C~SG~~~d  247 (269)
                      +||||+|||.+....         .|++|.|....       .....+++.    .+.+...++ .+|+|+|+.-...|
T Consensus        69 al~~~aGhg~Q~~~~---------~~~~pv~~~~~~~~~~~~~~v~~~~~~----~~~p~~~~V~~~~lD~~~~~~~~d  134 (380)
T COG4249          69 ALIYYAGHGLQVDGT---------NYLLPVDADDVSPTFAVTEAVLIDCRL----IPLPARTKVRRVLLDAARDNPPAD  134 (380)
T ss_pred             HHhhhccccccccCc---------cccccchhhhccccchhhhhhhhhhhc----ccCCchhHHHHHHHHHhhcCchhh
Confidence            999999999886432         47889887521       122222221    233333333 58899998766643

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=95.44  E-value=0.05  Score=58.27  Aligned_cols=104  Identities=18%  Similarity=0.284  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHHHhh-CCCC-cceEEecCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEeccccccCCCCCCC---
Q 024329          121 NDVKSMWFLLVRML-GFPS-DCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGHGSRQKDYNKDE---  195 (269)
Q Consensus       121 nDA~~m~~~L~~~~-Gf~~-~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~~gD~lvfYFSGHG~~~~d~~gde---  195 (269)
                      .-++.+.+-|..+| .+.. .+-.+-+|        ||.+++++--..+.+.++ +|.|+|||-|||...+..||+-   
T Consensus       140 KA~e~IG~nlq~qYE~wqprtRYK~~lD--------P~vddVrKlc~slRr~ak-~eRvLFHYNGHGVPkPT~nGEIWVF  210 (1387)
T KOG1517|consen  140 KALEAIGKNLQRQYERWQPRTRYKVCLD--------PTVDDVRKLCTSLRRNAK-EERVLFHYNGHGVPKPTANGEIWVF  210 (1387)
T ss_pred             HHHHHHHHHHHHHHHhhChhhhhhhccC--------CcHHHHHHHHHHHhhhcC-CceEEEEecCCCCCCCCCCCcEEEE
Confidence            55566666666544 2222 22223333        899999988888866655 7999999999999999888741   


Q ss_pred             CCCCcceeeccCCCCCCCChHHHHHHHHhccCCCCCeEEEEEeCCCCCCCCCC
Q 024329          196 LDGFDETICPLDHETEGPIIDDEINATIVRPLPRGAKLHAIIDSCYSGTVLDL  248 (269)
Q Consensus       196 ~dG~de~L~p~D~~~~g~I~~deL~~~L~~~l~~g~~l~vIlD~C~SG~~~dl  248 (269)
                      ..+|..|| |        ++-.||..||.      .-.+.|.||-..+.++-.
T Consensus       211 NK~fTQYI-P--------lsi~dLqsWl~------aP~IyVydcssA~~Il~n  248 (1387)
T KOG1517|consen  211 NKSFTQYI-P--------LSIFDLQSWLG------APTIYVYDCSSAENILVN  248 (1387)
T ss_pred             ecCcceee-c--------ccHHHHHhhhc------CCeEEEEeccchHHHHHH
Confidence            22333333 2        24457778873      235788998887766543

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=94.96  E-value=0.023  Score=36.80  Aligned_cols=29  Identities=24%  Similarity=0.631  Sum_probs=24.4

Q ss_pred             ccccCCCCCCceecC-----CCCceeecccccce
Q 024329            4 RVERCSGCGRQLWLP-----PQAVAARCYACRSV   32 (269)
Q Consensus         4 ~~~~c~~c~~~~~~~-----~~~~~~~c~~c~~~   32 (269)
                      |.+.|.+|++...++     ++.+.+||..|+.+
T Consensus         1 M~i~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~   34 (36)
T PF13717_consen    1 MIITCPNCQAKYEIDDEKIPPKGRKVRCSKCGHV   34 (36)
T ss_pred             CEEECCCCCCEEeCCHHHCCCCCcEEECCCCCCE
Confidence            678999999988765     56789999999865

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=94.05  E-value=0.038  Score=35.68  Aligned_cols=31  Identities=19%  Similarity=0.374  Sum_probs=24.9

Q ss_pred             ccccCCCCCCceecCCC-----Cceeecccccceee
Q 024329            4 RVERCSGCGRQLWLPPQ-----AVAARCYACRSVTS   34 (269)
Q Consensus         4 ~~~~c~~c~~~~~~~~~-----~~~~~c~~c~~~~~   34 (269)
                      |.+.|++|++.+.++..     ...++|+.|+.+-.
T Consensus         1 M~~~CP~C~~~~~v~~~~~~~~~~~v~C~~C~~~~~   36 (38)
T TIGR02098         1 MRIQCPNCKTSFRVVDSQLGANGGKVRCGKCGHVWY   36 (38)
T ss_pred             CEEECCCCCCEEEeCHHHcCCCCCEEECCCCCCEEE
Confidence            56889999999988852     34799999997654

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=93.48  E-value=0.064  Score=36.27  Aligned_cols=30  Identities=27%  Similarity=0.558  Sum_probs=26.3

Q ss_pred             ccccCCCCCCceecCCCCceeeccccccee
Q 024329            4 RVERCSGCGRQLWLPPQAVAARCYACRSVT   33 (269)
Q Consensus         4 ~~~~c~~c~~~~~~~~~~~~~~c~~c~~~~   33 (269)
                      +...|.+||+.+.+.+....++|..|..--
T Consensus         2 ~~y~C~~CG~~~~~~~~~~~~~Cp~CG~~~   31 (46)
T PRK00398          2 AEYKCARCGREVELDEYGTGVRCPYCGYRI   31 (46)
T ss_pred             CEEECCCCCCEEEECCCCCceECCCCCCeE
Confidence            567899999999999998899999998533

>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]

Probab=90.30  E-value=0.14  Score=35.60  Aligned_cols=35  Identities=26%  Similarity=0.471  Sum_probs=28.9

Q ss_pred             CCcccccCCCCCCceecCCCCceeecccccceeec
Q 024329            1 MTSRVERCSGCGRQLWLPPQAVAARCYACRSVTSF   35 (269)
Q Consensus         1 ~~~~~~~c~~c~~~~~~~~~~~~~~c~~c~~~~~~   35 (269)
                      |+++.-.|..|++.+.+......+||..|..-..+
T Consensus         2 ~~~~~Y~C~~Cg~~~~~~~~~~~irCp~Cg~rIl~   36 (49)
T COG1996           2 EAMMEYKCARCGREVELDQETRGIRCPYCGSRILV   36 (49)
T ss_pred             cceEEEEhhhcCCeeehhhccCceeCCCCCcEEEE
Confidence            45677789999999998889999999999754433

>PF03415 Peptidase_C11: Clostripain family This family belongs to family C11 of the peptidase classification

Probab=89.48  E-value=2.1  Score=41.69  Aligned_cols=83  Identities=16%  Similarity=0.284  Sum_probs=45.4

Q ss_pred             CCccHHHHHHHHHHHHHhCCCCCEEEEEEeccccccCCCCCCCCCCCcceeeccCCCC-CCCChHHHHHHHHhccCCCCC
Q 024329          153 RIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHET-EGPIIDDEINATIVRPLPRGA  231 (269)
Q Consensus       153 ~~pTk~nI~~aL~~L~~~~~~gD~lvfYFSGHG~~~~d~~gde~dG~de~L~p~D~~~-~g~I~~deL~~~L~~~l~~g~  231 (269)
                      ...+.+.+.+-|+|..+... -|.-.+-|.+||.-+.......    ...+ ..|... ...+.-.||.+.|.    .+.
T Consensus        76 nm~dp~tL~~fi~~~~~~yP-A~~y~LIlw~HG~Gw~~~~~~~----~rg~-~~D~~~~~~~l~i~el~~aL~----~~~  145 (397)
T PF03415_consen   76 NMGDPDTLSDFINWAKENYP-ADRYGLILWDHGGGWLPASDSS----TRGI-GFDETSGGDYLSIPELAEALE----GGP  145 (397)
T ss_dssp             -TTSHHHHHHHHHHHHHHS--ECEEEEEEES-B-TT--TTGGG-------E-EEETTE---EE-HHHHHHHS------TT
T ss_pred             CCCCHHHHHHHHHHHHHhCC-cccEEEEEEECCCCCCcCCCCC----cceE-ecCCCChhhcccHHHHHHHHc----CCC
Confidence            35567778888888888764 5888889999998763221100    0112 222221 33566788888774    345


Q ss_pred             eE-EEEEeCCCCCCC
Q 024329          232 KL-HAIIDSCYSGTV  245 (269)
Q Consensus       232 ~l-~vIlD~C~SG~~  245 (269)
                      ++ ++.+|+|.=|++
T Consensus       146 ~~d~I~FDaClM~~v  160 (397)
T PF03415_consen  146 KFDFIGFDACLMGSV  160 (397)
T ss_dssp             -EEEEEEESTT--BH
T ss_pred             CCcEEEECcccchhH
Confidence            66 899999998774

; InterPro: IPR005077 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C11 (clostripain family, clan CD). ; PDB: 3UWS_A.

>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains

Probab=84.44  E-value=0.89  Score=28.30  Aligned_cols=27  Identities=30%  Similarity=0.587  Sum_probs=18.5

Q ss_pred             ccCCCCCCceecCCCCceeecccccce
Q 024329            6 ERCSGCGRQLWLPPQAVAARCYACRSV   32 (269)
Q Consensus         6 ~~c~~c~~~~~~~~~~~~~~c~~c~~~   32 (269)
                      -.|+.||.+...-++..+-+|..|...
T Consensus         4 rfC~~CG~~t~~~~~g~~r~C~~Cg~~   30 (32)
T PF09297_consen    4 RFCGRCGAPTKPAPGGWARRCPSCGHE   30 (32)
T ss_dssp             SB-TTT--BEEE-SSSS-EEESSSS-E
T ss_pred             cccCcCCccccCCCCcCEeECCCCcCE
Confidence            359999999999999999999999754

; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.

>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=82.95  E-value=5.8  Score=34.60  Aligned_cols=61  Identities=18%  Similarity=0.318  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEeccccccC
Q 024329          121 NDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGHGSRQK  189 (269)
Q Consensus       121 nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~~gD~lvfYFSGHG~~~~  189 (269)
                      .+-+...+-|.++.||...++..+..+.      |.++++++.+  +-+-.-.+|.|-|+.+|||...-
T Consensus        50 ~a~~~eid~l~~e~Gyk~~Dvvsv~~~~------pk~del~akF--~~EH~H~d~EvRy~vaG~GiF~v  110 (181)
T COG1791          50 DAYETEIDRLIRERGYKNRDVVSVSPSN------PKLDELRAKF--LQEHLHTDDEVRYFVAGEGIFDV  110 (181)
T ss_pred             hhHHHHHHHHHHhhCCceeeEEEeCCCC------ccHHHHHHHH--HHHhccCCceEEEEEecceEEEE
Confidence            3334456667778899988888888765      8899988887  33445578999999999998754

>COG4995 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=81.91  E-value=3  Score=41.11  Aligned_cols=118  Identities=14%  Similarity=0.115  Sum_probs=69.4

Q ss_pred             CCCceEEEEEeeCC--C---CCCCCCCChHHHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHh
Q 024329           96 VYGRKKALLCGVTY--N---DTNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQD  170 (269)
Q Consensus        96 ~~~~k~ALlIGInY--~---~~~~~L~g~~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~  170 (269)
                      ...+-++++-|.+-  .   ..-..|+++...|+.+++.+...        .+|.+.+      -|..+....++..   
T Consensus       209 ~~~~l~vl~~g~s~~~~~~~~~~~~Lp~~~~Ev~~Ia~~~~~~--------~~ll~q~------Ft~~~~~~~~~~~---  271 (420)
T COG4995         209 RQQNLKVLAAGLSEPSGPARTGFDALPFAALEVETIAAIFPPQ--------KLLLNQA------FTAANLAQEIDTK---  271 (420)
T ss_pred             cccchhHHHhccCcccccccccccccchHHHHHHHHHHhhhhH--------Hhhhccc------chhhHHhhhhhcC---
Confidence            34455667777663  1   12358999999999999887421        1233332      2445554444433   


Q ss_pred             CCCCCEEEEEEeccccccCCCCCCCCCCCcceeeccCCCCCCCChHHHHHHHHhc--cCCCCCeEEEEEeCCCCCCC
Q 024329          171 CQPGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVR--PLPRGAKLHAIIDSCYSGTV  245 (269)
Q Consensus       171 ~~~gD~lvfYFSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~~deL~~~L~~--~l~~g~~l~vIlD~C~SG~~  245 (269)
                          +-=|+||+.||.....      +..+.+|+.+|.+.+.    +++..++..  .....+.+ +||.||-.|..
T Consensus       272 ----~~~vvHlATHg~f~s~------~p~~S~l~~~~~~~~~----~~~~~~~~~~~~~~~~vdL-vVLSACqTa~g  333 (420)
T COG4995         272 ----PYSVVHLATHGQFSSG------NPEDSFLLLWDGPINV----TELDILLRNRNNNLLPVEL-VVLSACQTALG  333 (420)
T ss_pred             ----CCceEEEeccccccCC------CcccceeeecCCCCcc----cHHHHHHHhcccCCCCeee-EEEecchhccC
Confidence                3447899999998652      2234578888765442    233332211  11223554 99999998873

>PF10122 Mu-like_Com: Mu-like prophage protein Com; InterPro: IPR019294 Members of this entry belong to the Com family of proteins that act as translational regulators of mom [, ]

Probab=81.73  E-value=0.74  Score=32.22  Aligned_cols=35  Identities=17%  Similarity=0.548  Sum_probs=27.1

Q ss_pred             ccccCCCCCCceecCCCC--ceeecccccceeeccCC
Q 024329            4 RVERCSGCGRQLWLPPQA--VAARCYACRSVTSFPSS   38 (269)
Q Consensus         4 ~~~~c~~c~~~~~~~~~~--~~~~c~~c~~~~~~~~~   38 (269)
                      ..++|.+|++-|.---++  -.|.|.-|.++.+|...
T Consensus         3 ~eiRC~~CnklLa~~g~~~~leIKCpRC~tiN~~~a~   39 (51)
T PF10122_consen    3 KEIRCGHCNKLLAKAGEVIELEIKCPRCKTINHVRAT   39 (51)
T ss_pred             cceeccchhHHHhhhcCccEEEEECCCCCccceEecc
Confidence            568999999866553333  38999999999998843

>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=80.52  E-value=1.4  Score=29.00  Aligned_cols=33  Identities=21%  Similarity=0.433  Sum_probs=20.1

Q ss_pred             cccCCCCCCce----ecCCCCceeecccccceeeccC
Q 024329            5 VERCSGCGRQL----WLPPQAVAARCYACRSVTSFPS   37 (269)
Q Consensus         5 ~~~c~~c~~~~----~~~~~~~~~~c~~c~~~~~~~~   37 (269)
                      .++|++|++.|    .+-.+.++..|.+|...+.+..
T Consensus         2 p~rC~~C~aylNp~~~~~~~~~~w~C~~C~~~N~lp~   38 (40)
T PF04810_consen    2 PVRCRRCRAYLNPFCQFDDGGKTWICNFCGTKNPLPP   38 (40)
T ss_dssp             S-B-TTT--BS-TTSEEETTTTEEEETTT--EEE--G
T ss_pred             ccccCCCCCEECCcceEcCCCCEEECcCCCCcCCCCC
Confidence            57999999964    5567888999999998887763

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger, an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes an approximately 55-residue Sec23/24 zinc-binding domain, which lies against the beta-barrel at the periphery of the complex. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EFO_B 3EG9_B 3EGD_A 2YRC_A 2NUP_A 2YRD_A 3EGX_A 2NUT_A 3EH1_A 1PD0_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	269
4f6o_A	350	Crystal Structure Of The Yeast Metacaspase Yca1 Len		1e-38
4afr_A	367	The Structure Of Metacaspase 2 (C213a Mutant) From		5e-28
4afp_A	367	The Structure Of Metacaspase 2 From T. Brucei Deter		9e-28
4af8_A	367	The Structural Basis For Metacaspase Substrate Spec		1e-27
3bij_A	285	Crystal Structure Of Protein Gsu0716 From Geobacter		7e-10

>pdb|4F6O|A Chain A, Crystal Structure Of The Yeast Metacaspase Yca1 Length = 350

Iteration: 1
 Score =  156 bits (394), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 76/160 (47%), Positives = 110/160 (68%)
Query: 98  GRKKALLCGVTYNDTNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTK 157
           GR+KAL+ G+ Y  +   L G IND  +++  L    G+ SD +VILT+++ +  R+PT+
Sbjct: 52  GRRKALIIGINYIGSKNQLRGCINDAHNIFNFLTNGYGYSSDDIVILTDDQNDLVRVPTR 111
Query: 158 QNIRTAMRWLAQDCQPGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDD 217
            N+  AM+WL +D QP DSL  HYSGHG + +D + DE DG D+ I P+D ET+GPIIDD
Sbjct: 112 ANMIRAMQWLVKDAQPNDSLFLHYSGHGGQTEDLDGDEEDGMDDVIYPVDFETQGPIIDD 171
Query: 218 EINATIVRPLPRGAKLHAIIDSCYSGTVLDLPFVCKINGV 257
           E++  +V+PL +G +L A+ DSC+SGTVLDLP+     G+
Sbjct: 172 EMHDIMVKPLQQGVRLTALFDSCHSGTVLDLPYTYSTKGI 211

>pdb|4AFR|A Chain A, The Structure Of Metacaspase 2 (C213a Mutant) From T. Brucei Length = 367

Iteration: 1
 Score =  121 bits (303), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 70/189 (37%), Positives = 104/189 (55%), Gaps = 12/189 (6%)
Query: 91  WSPPPVYGRK-KALLCGVTYNDTNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEK 149
           W   P+ G+  +AL  G+ Y  T+  L+G  NDVK M   L +  G P +  VIL +E+ 
Sbjct: 83  WVATPLPGQTVRALFIGINYYGTSAALSGCCNDVKQMLATLQKK-GLPINEAVILVDEDN 141
Query: 150 NPYRI--PTKQNIRTAMRWLAQDCQPGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLD 207
            P R   PT+ NI   M WL +D +PGD L FHYSGHG++ K    D  + +D+ I P+D
Sbjct: 142 FPGRTDQPTRDNIVRYMAWLVKDAKPGDVLFFHYSGHGTQCKSRG-DSDEKYDQCIAPVD 200
Query: 208 HETEGPIIDDEINATIVRPLPRGAKLHAIIDSCYSGTVLDLPFVCKINGVQ-------MG 260
            +  G I+DD+I+  +   LP   +L A+ D  +SG+++DLPF    +G +       M 
Sbjct: 201 FQKSGCIVDDDIHKLLFSRLPEKVRLTAVFDCAHSGSIMDLPFTYVCSGGEQASGTPHMK 260
Query: 261 RSKNSNSLL 269
           R +  N +L
Sbjct: 261 RIREGNDVL 269

>pdb|4AFP|A Chain A, The Structure Of Metacaspase 2 From T. Brucei Determined In The Presence Of Samarium Length = 367

Iteration: 1
 Score =  120 bits (301), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 70/189 (37%), Positives = 104/189 (55%), Gaps = 12/189 (6%)
Query: 91  WSPPPVYGRK-KALLCGVTYNDTNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEK 149
           W   P+ G+  +AL  G+ Y  T+  L+G  NDVK M   L +  G P +  VIL +E+ 
Sbjct: 83  WVATPLPGQTVRALFIGINYYGTSAALSGCCNDVKQMLATLQKK-GLPINEAVILVDEDN 141
Query: 150 NPYRI--PTKQNIRTAMRWLAQDCQPGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLD 207
            P R   PT+ NI   M WL +D +PGD L FHYSGHG++ K    D  + +D+ I P+D
Sbjct: 142 FPGRTDQPTRDNIVRYMAWLVKDAKPGDVLFFHYSGHGTQCKSRG-DSDEKYDQCIAPVD 200
Query: 208 HETEGPIIDDEINATIVRPLPRGAKLHAIIDSCYSGTVLDLPFVCKINGVQ-------MG 260
            +  G I+DD+I+  +   LP   +L A+ D  +SG+++DLPF    +G +       M 
Sbjct: 201 FQKSGCIVDDDIHKLLFSRLPEKVRLTAVFDCGHSGSIMDLPFTYVCSGGEQASGTPHMK 260
Query: 261 RSKNSNSLL 269
           R +  N +L
Sbjct: 261 RIREGNDVL 269

>pdb|4AF8|A Chain A, The Structural Basis For Metacaspase Substrate Specificity And Activation Length = 367

Iteration: 1
 Score =  120 bits (300), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 70/189 (37%), Positives = 104/189 (55%), Gaps = 12/189 (6%)
Query: 91  WSPPPVYGRK-KALLCGVTYNDTNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEK 149
           W   P+ G+  +AL  G+ Y  T+  L+G  NDVK M   L +  G P +  VIL +E+ 
Sbjct: 83  WVATPLPGQTVRALFIGINYYGTSAALSGCCNDVKQMLATLQKR-GLPINEAVILVDEDN 141
Query: 150 NPYRI--PTKQNIRTAMRWLAQDCQPGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLD 207
            P R   PT+ NI   M WL +D +PGD L FHYSGHG++ K    D  + +D+ I P+D
Sbjct: 142 FPGRTDQPTRDNIVRYMAWLVKDAKPGDVLFFHYSGHGTQCKSRG-DSDEKYDQCIAPVD 200
Query: 208 HETEGPIIDDEINATIVRPLPRGAKLHAIIDSCYSGTVLDLPFVCKINGVQ-------MG 260
            +  G I+DD+I+  +   LP   +L A+ D  +SG+++DLPF    +G +       M 
Sbjct: 201 FQKSGCIVDDDIHKLLFSRLPEKVRLTAVFDCGHSGSIMDLPFTYVCSGGEQASGTPHMK 260
Query: 261 RSKNSNSLL 269
           R +  N +L
Sbjct: 261 RIREGNDVL 269

>pdb|3BIJ|A Chain A, Crystal Structure Of Protein Gsu0716 From Geobacter Sulfurreducens. Northeast Structural Genomics Target Gsr13 Length = 285

Iteration: 1
 Score = 60.8 bits (146), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 54/110 (49%), Gaps = 8/110 (7%)
Query: 153 RIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEG 212
           +  T+  +  A+   A+    GD     YSGHG +  D + DE DG DET C  D    G
Sbjct: 53  KAATRAKVIDAIGKAAKALGKGDIFXLSYSGHGGQVPDTSNDEPDGVDETWCLFD----G 108
Query: 213 PIIDDEINATIVRPLPRGAKLHAIIDSCYSGTVLDLPFVCKINGVQMGRS 262
            +IDDE+ A ++     G ++    DSC+SGTV+   +    NG    RS
Sbjct: 109 ELIDDELYA-LLGKFAAGVRVLVFSDSCHSGTVVKXAY---YNGTTAARS 154

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	269
4f6o_A	350	Metacaspase-1; rossmann fold, hydrolase; HET: DFH;	9e-57
4af8_A	367	Metacaspase MCA2; hydrolase, cysteine peptidase, c	6e-49
3bij_A	285	Uncharacterized protein GSU0716; alpha-beta protei	7e-40
3uoa_B	390	Mucosa-associated lymphoid tissue lymphoma transl	2e-11

>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae} Length = 350

 Score =  184 bits (468), Expect = 9e-57
 Identities = 88/218 (40%), Positives = 125/218 (57%), Gaps = 8/218 (3%)

Query: 40  QRWAQVYGSVSQPHHNVVTIVPSNYVAAGPGNGKYPRQGCNNYYIDQPRPAWSPPPVYGR 99
           Q  AQ+    + P+ N      SN           P Q       DQP          GR
Sbjct: 2   QAKAQLSNGYNNPNVN-----ASNMYGPPQNMSLPPPQTQTIQGTDQPYQ---YSQCTGR 53

Query: 100 KKALLCGVTYNDTNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQN 159
           +KAL+ G+ Y  +   L G IND  +++  L    G+ SD +VILT+++ +  R+PT+ N
Sbjct: 54  RKALIIGINYIGSKNQLRGCINDAHNIFNFLTNGYGYSSDDIVILTDDQNDLVRVPTRAN 113

Query: 160 IRTAMRWLAQDCQPGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEI 219
           +  AM+WL +D QP DSL  HYSGHG + +D + DE DG D+ I P+D ET+GPIIDDE+
Sbjct: 114 MIRAMQWLVKDAQPNDSLFLHYSGHGGQTEDLDGDEEDGMDDVIYPVDFETQGPIIDDEM 173

Query: 220 NATIVRPLPRGAKLHAIIDSCYSGTVLDLPFVCKINGV 257
           +  +V+PL +G +L A+ DSC+SGTVLDLP+     G+
Sbjct: 174 HDIMVKPLQQGVRLTALFDSCHSGTVLDLPYTYSTKGI 211

>4af8_A Metacaspase MCA2; hydrolase, cysteine peptidase, caspase/hemoglobin fold; 1.40A {Trypanosoma brucei} PDB: 4afp_A 4afv_A 4afr_A Length = 367

 Score =  164 bits (416), Expect = 6e-49
 Identities = 71/236 (30%), Positives = 111/236 (47%), Gaps = 4/236 (1%)

Query: 29  CRSVTSFPSSSQRWAQVYGSVSQPHHNVVTIVPSNYVAAGPGNGKYPRQGCNNYYIDQPR 88
           C  +T    + Q    V         +   +V +  +   P          +   +   +
Sbjct: 22  CSLITQLCDAGQLADYVGLGWLNAVSSQPYLVQALGLQPPPRRVDVDAAFRDAKGLHGHQ 81

Query: 89  PAWSPPPVYGRKKALLCGVTYNDTNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEE 148
           P  + P      +AL  G+ Y  T+  L+G  NDVK M   L +  G P +  VIL +E+
Sbjct: 82  PWVATPLPGQTVRALFIGINYYGTSAALSGCCNDVKQMLATLQKR-GLPINEAVILVDED 140

Query: 149 KNPYRI--PTKQNIRTAMRWLAQDCQPGDSLVFHYSGHGSRQKDYNKDELDGFDETICPL 206
             P R   PT+ NI   M WL +D +PGD L FHYSGHG++ K    D  + +D+ I P+
Sbjct: 141 NFPGRTDQPTRDNIVRYMAWLVKDAKPGDVLFFHYSGHGTQCKSRG-DSDEKYDQCIAPV 199

Query: 207 DHETEGPIIDDEINATIVRPLPRGAKLHAIIDSCYSGTVLDLPFVCKINGVQMGRS 262
           D +  G I+DD+I+  +   LP   +L A+ D  +SG+++DLPF    +G +    
Sbjct: 200 DFQKSGCIVDDDIHKLLFSRLPEKVRLTAVFDCGHSGSIMDLPFTYVCSGGEQASG 255

>3bij_A Uncharacterized protein GSU0716; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.50A {Geobacter sulfurreducens pca} Length = 285

 Score =  139 bits (350), Expect = 7e-40
 Identities = 44/175 (25%), Positives = 69/175 (39%), Gaps = 21/175 (12%)

Query: 98  GRKKALLCGV------TYNDTNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNP 151
            +  AL  G+       Y      L     D + M  +     GF      ++T+     
Sbjct: 2   PKGIALALGLNAVDPKHYGGWAGKLNACEADAEDMAAIAAE-RGFAVT--TLMTKA---- 54

Query: 152 YRIPTKQNIRTAMRWLAQDCQPGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETE 211
               T+  +  A+   A+    GD  +  YSGHG +  D + DE DG DET C  D    
Sbjct: 55  ---ATRAKVIDAIGKAAKALGKGDIFMLSYSGHGGQVPDTSNDEPDGVDETWCLFD---- 107

Query: 212 GPIIDDEINATIVRPLPRGAKLHAIIDSCYSGTVLDLPFVCKINGVQMGRSKNSN 266
           G +IDDE+ A ++     G ++    DSC+SGTV+ + +       +        
Sbjct: 108 GELIDDELYA-LLGKFAAGVRVLVFSDSCHSGTVVKMAYYNGTTAARSAGPDEGE 161

>3uoa_B Mucosa-associated lymphoid tissue lymphoma transl protein 1; paracaspase, lymphoma, NF-KB signalling, caspase fold, immun fold, hydrolase-hydrolase inhibitor complex; 1.75A {Homo sapiens} PDB: 3uo8_B 3v55_A 3v4l_A* 3v4o_A* Length = 390

 Score = 62.5 bits (151), Expect = 2e-11
 Identities = 32/154 (20%), Positives = 51/154 (33%), Gaps = 23/154 (14%)

Query: 96  VYGRKKALLCGV-TYNDTNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRI 154
           +   K ALL G   Y +    L   + DV  +  LL R L F    VV L +        
Sbjct: 2   LAKDKVALLIGNMNYREHPK-LKAPLVDVYELTNLL-RQLDFK---VVSLLD-------- 48

Query: 155 PTKQNIRTAMRWLAQDCQPGDSLVFHYSGHGSRQKDYNKD-ELDGFDETICPLDHETEGP 213
            T+  +R A+         G   + +Y+GHG      +    +D       P  + +E  
Sbjct: 49  LTEYEMRNAVDEFLLLLDKGVYGLLYYAGHGYENFGNSFMVPVD------APNPYRSENC 102

Query: 214 IIDDEINATIVRPLPRGAKLHAIIDSCYSGTVLD 247
           +    I   +            ++D C      D
Sbjct: 103 LCVQNILKLMQEKETG--LNVFLLDMCRKRNDYD 134

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	269
4f6o_A	350	Metacaspase-1; rossmann fold, hydrolase; HET: DFH;	100.0
4af8_A	367	Metacaspase MCA2; hydrolase, cysteine peptidase, c	100.0
3bij_A	285	Uncharacterized protein GSU0716; alpha-beta protei	100.0
3uoa_B	390	Mucosa-associated lymphoid tissue lymphoma transl	99.83
2h54_A	178	Caspase-1; allosteric site, dimer interface, hydro	99.43
2j32_A	250	Caspase-3; Pro-caspase3, thiol protease, hydrolase	99.22
3e4c_A	302	Caspase-1; zymogen, inflammasome, ICE, IL-1B, inna	99.19
1m72_A	272	Caspase-1; caspase, cysteine protease, hydrolase-h	99.18
1f1j_A	305	Caspase-7 protease; caspase-7, cysteine protease,	99.17
4ehd_A	277	Caspase-3; caspase, apoptosis, allosteric inhibiti	99.11
2fp3_A	316	Caspase NC; apoptosis, initiator caspase activatio	99.11
2nn3_C	310	Caspase-1; cysteine protease, hydrolase; 3.00A {Sp	99.11
3od5_A	278	Caspase-6; caspase domain, apoptotic protease, hyd	99.1
1nw9_B	277	Caspase 9, apoptosis-related cysteine protease; XI	99.07
3sir_A	259	Caspase; hydrolase; 2.68A {Drosophila melanogaster	99.07
3h11_B	271	Caspase-8; cell death, apoptosis, caspase, alterna	99.02
1pyo_A	167	Caspase-2; apoptosis, caspase, alpha-beta, thiol p	98.76
2dko_A	146	Caspase-3; low barrier hydrogen bond, caspase, dru	98.65
1qtn_A	164	Caspase-8; apoptosis, dithiane-DIOL, caspase, cyst	98.59
2ql9_A	173	Caspase-7; cysteine protease, apoptosis, thiol pro	98.35
3p45_A	179	Caspase-6; protease, huntington'S disease, physio	98.26
3h11_A	272	CAsp8 and FADD-like apoptosis regulator; cell deat	97.88
1gh9_A	71	8.3 kDa protein (gene MTH1184); beta+alpha complex	90.15

>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-44  Score=337.65  Aligned_cols=165  Identities=46%  Similarity=0.855  Sum_probs=145.1

Q ss_pred             CCCCCCCceEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhC
Q 024329           92 SPPPVYGRKKALLCGVTYNDTNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDC  171 (269)
Q Consensus        92 ~~p~~~~~k~ALlIGInY~~~~~~L~g~~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~  171 (269)
                      .+++..++|+||||||||++...+|+||+|||++|+++|++++||+.++|++|+|++.++...||++||+++|+||++++
T Consensus        46 ~~s~~~grr~ALlIGIn~Y~~~~~L~g~vnDA~~m~~~L~~~~Gf~~~~I~lLtd~~~~~~~~pTr~nI~~aL~~L~~~a  125 (350)
T 4f6o_A           46 QYSQCTGRRKALIIGINYIGSKNQLRGCINDAHNIFNFLTNGYGYSSDDIVILTDDQNDLVRVPTRANMIRAMQWLVKDA  125 (350)
T ss_dssp             CCCCCCSCEEEEEEECCCTTSTTCCSSHHHHHHHHHHHHHHHSCCCGGGEEEEETTSSCGGGSCCHHHHHHHHHHHHTTC
T ss_pred             ccCCCCCCEEEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCccceeeecccccccccCCCHHHHHHHHHHHHHhC
Confidence            56678899999999999888788999999999999999998899999999999998877777899999999999999999


Q ss_pred             CCCCEEEEEEeccccccCCCCCCCCCCCcceeeccCCCCCCCChHHHHHHHHhccCCCCCeEEEEEeCCCCCCCCCCccc
Q 024329          172 QPGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVRPLPRGAKLHAIIDSCYSGTVLDLPFV  251 (269)
Q Consensus       172 ~~gD~lvfYFSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~~deL~~~L~~~l~~g~~l~vIlD~C~SG~~~dlp~~  251 (269)
                      +++|+|||||||||.+..+.+|+|.||+||+|||+|++..|.|+++||.++|++.++++++|++|+||||||+++|+||.
T Consensus       126 ~pgD~llfYFSGHG~q~~d~~gdE~dG~De~lvP~D~~~~g~I~ddeL~~~L~~~l~~g~~vt~IlD~ChSGt~ldlp~~  205 (350)
T 4f6o_A          126 QPNDSLFLHYSGHGGQTEDLDGDEEDGMDDVIYPVDFETQGPIIDDEMHDIMVKPLQQGVRLTALFDSCHSGTVLDLPYT  205 (350)
T ss_dssp             CTTCEEEEEEESCEEEC-----------CEEECCTTHHHHCCEEHHHHHHHHTTTCCTTCEEEEEECSSSCTTTTCCSEE
T ss_pred             CCCCEEEEEEcCCceeccCCCCCcccCCceEEEeccCCcCCcccHHHHHHHHHhhcCCCCeEEEEEccCCCCcccccccc
Confidence            99999999999999999999999999999999999998888999999999998889999999999999999999999999


Q ss_pred             ccccc
Q 024329          252 CKING  256 (269)
Q Consensus       252 ~~~~~  256 (269)
                      |+.++
T Consensus       206 ~~~~g  210 (350)
T 4f6o_A          206 YSTKG  210 (350)
T ss_dssp             EETTE
T ss_pred             ccccc
Confidence            98653

>4af8_A Metacaspase MCA2; hydrolase, cysteine peptidase, caspase/hemoglobin fold; 1.40A {Trypanosoma brucei} PDB: 4afp_A 4afv_A 4afr_A

Probab=100.00  E-value=2.1e-40  Score=313.23  Aligned_cols=163  Identities=39%  Similarity=0.672  Sum_probs=143.2

Q ss_pred             CCCCCCCceEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhCCCCcceEEecCCCCCC--CCCccHHHHHHHHHHHHH
Q 024329           92 SPPPVYGRKKALLCGVTYNDTNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNP--YRIPTKQNIRTAMRWLAQ  169 (269)
Q Consensus        92 ~~p~~~~~k~ALlIGInY~~~~~~L~g~~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~--~~~pTk~nI~~aL~~L~~  169 (269)
                      .++...+++|||+||||||+...+|+||+|||++|+++|+ ++||+.++|.+|+|++..+  ...||++||+++|+||++
T Consensus        85 ~~~~~~grr~ALlIGIn~Y~~~~~L~g~vnDA~~m~~~L~-~~GF~~~~i~~L~D~~~~p~~~~~pTr~nI~~aL~~L~~  163 (367)
T 4af8_A           85 ATPLPGQTVRALFIGINYYGTSAALSGCCNDVKQMLATLQ-KRGLPINEAVILVDEDNFPGRTDQPTRDNIVRYMAWLVK  163 (367)
T ss_dssp             CCCCTTCCEEEEEEECCCTTSTTCCSSHHHHHHHHHHHHH-HTTCCCSEEEEEECCTTCTTCCBCCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCeEEEEEEeCCCCCccCCCCHHHHHHHHHHHHH-HcCCCchheEEecccccccccccCCCHHHHHHHHHHHHH
Confidence            3456789999999999988878899999999999999997 4899999999999875332  346999999999999999


Q ss_pred             hCCCCCEEEEEEeccccccCCCCCCCCCCCcceeeccCCCCCCCChHHHHHHHHhccCCCCCeEEEEEeCCCCCCCCCCc
Q 024329          170 DCQPGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVRPLPRGAKLHAIIDSCYSGTVLDLP  249 (269)
Q Consensus       170 ~~~~gD~lvfYFSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~~deL~~~L~~~l~~g~~l~vIlD~C~SG~~~dlp  249 (269)
                      ++++||+|||||||||.+.++. ++|.||+||+|||+|++.+|.|+++||.++|++.+++++++++|+||||||+++|+|
T Consensus       164 ~a~pgD~l~fyFSGHG~q~~d~-~de~dg~De~LvP~D~~~~g~I~ddeL~~lLv~~l~~g~~v~vIlD~ChSGt~~dlp  242 (367)
T 4af8_A          164 DAKPGDVLFFHYSGHGTQCKSR-GDSDEKYDQCIAPVDFQKSGCIVDDDIHKLLFSRLPEKVRLTAVFDCGHSGSIMDLP  242 (367)
T ss_dssp             TCCTTCEEEEEEESCEEEECCC------CCEEEECCTTHHHHCCEEHHHHHHHHTTTCCTTCEEEEEEECTTCCCCTTCS
T ss_pred             hCCCCCEEEEEEcCCcCccCCC-CCCCCCcceEEEeecCCcCCCccHHHHHHHHHHhccCCCEEEEEEeCCCCCcccccc
Confidence            9999999999999999999885 678899999999999988899999999999889998899999999999999999999


Q ss_pred             ccccccc
Q 024329          250 FVCKING  256 (269)
Q Consensus       250 ~~~~~~~  256 (269)
                      |.++.++
T Consensus       243 ~~~~~r~  249 (367)
T 4af8_A          243 FTYVCSG  249 (367)
T ss_dssp             EEEECCT
T ss_pred             ccccccc
Confidence            9876543

>3bij_A Uncharacterized protein GSU0716; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.50A {Geobacter sulfurreducens pca}

Probab=100.00  E-value=1.7e-33  Score=257.39  Aligned_cols=141  Identities=30%  Similarity=0.441  Sum_probs=125.3

Q ss_pred             CceEEEEEeeCC-C-----CCCCCCCChHHHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhC
Q 024329           98 GRKKALLCGVTY-N-----DTNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDC  171 (269)
Q Consensus        98 ~~k~ALlIGInY-~-----~~~~~L~g~~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~  171 (269)
                      ++++||+||||+ .     +...+|+||+|||+.|+++|+ ++||+   |.+|++++      ||++||+++|+||++++
T Consensus         2 ~~~~ALlIGi~~Y~~~~Y~~~~~~L~~~~nDa~~~~~~L~-~~Gf~---v~~l~~~~------~t~~~i~~al~~l~~~~   71 (285)
T 3bij_A            2 PKGIALALGLNAVDPKHYGGWAGKLNACEADAEDMAAIAA-ERGFA---VTTLMTKA------ATRAKVIDAIGKAAKAL   71 (285)
T ss_dssp             CCEEEEEEECSCCCTTTTTTCCCCCSSHHHHHHHHHHHHH-HTTCE---EEEEEGGG------CCHHHHHHHHHHHHHHC
T ss_pred             CceEEEEEEeCCccccccCCCcccCCCCHHHHHHHHHHHH-HcCCc---eEEecCCc------cCHHHHHHHHHHHHHhC
Confidence            689999999994 2     345699999999999999995 68997   67777765      89999999999999999


Q ss_pred             CCCCEEEEEEeccccccCCCCCCCCCCCcceeeccCCCCCCCChHHHHHHHHhccCCCCCeEEEEEeCCCCCCCCC-Ccc
Q 024329          172 QPGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVRPLPRGAKLHAIIDSCYSGTVLD-LPF  250 (269)
Q Consensus       172 ~~gD~lvfYFSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~~deL~~~L~~~l~~g~~l~vIlD~C~SG~~~d-lp~  250 (269)
                      +++|+|||||||||.+..+.+|+|.||++++|+|+|.    .|.++||.++| +.+++++++++||||||||++.+ +||
T Consensus        72 ~~~D~~~~yfSGHG~~~~~~~g~e~dg~~~~l~p~D~----~i~~~~l~~~l-~~l~~~~~~~vilD~C~SG~~~~~~p~  146 (285)
T 3bij_A           72 GKGDIFMLSYSGHGGQVPDTSNDEPDGVDETWCLFDG----ELIDDELYALL-GKFAAGVRVLVFSDSCHSGTVVKMAYY  146 (285)
T ss_dssp             CTTCEEEEEEESCEEEEECTTSCCTTCEEEEEECSSS----EEEHHHHHHHH-TTSCSSCEEEEEEECCCCCCHHHHHHT
T ss_pred             CCCCEEEEEEcCCcccccCCCCCccCCCcceEEecCC----CccHHHHHHHH-HhccCCCeEEEEEecCCCCcccccccc
Confidence            9999999999999999988889999999999999994    58899999988 67776789999999999999998 888


Q ss_pred             ccc
Q 024329          251 VCK  253 (269)
Q Consensus       251 ~~~  253 (269)
                      .++
T Consensus       147 ~~~  149 (285)
T 3bij_A          147 NGT  149 (285)
T ss_dssp             TC-
T ss_pred             ccc
Confidence            653

>3uoa_B Mucosa-associated lymphoid tissue lymphoma transl protein 1; paracaspase, lymphoma, NF-KB signalling, caspase fold, immun fold, hydrolase-hydrolase inhibitor complex; 1.75A {Homo sapiens} PDB: 3uo8_B 3v55_A 3v4l_A* 3v4o_A*

Probab=99.83  E-value=2.8e-20  Score=177.09  Aligned_cols=127  Identities=23%  Similarity=0.219  Sum_probs=103.5

Q ss_pred             CCceEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhCCCCCE
Q 024329           97 YGRKKALLCGVTYNDTNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDCQPGDS  176 (269)
Q Consensus        97 ~~~k~ALlIGInY~~~~~~L~g~~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~~~gD~  176 (269)
                      .++++||||||+.|....+|+|+.+||++|+++|+ .+||+   |.+++|        +|+++|+++|+++.+..+++|.
T Consensus         3 A~~r~ALIIGn~~Y~~~~~L~ga~~DA~~L~~~L~-~lGF~---V~~l~D--------lT~~eI~~aL~~f~~~~~~~D~   70 (390)
T 3uoa_B            3 AKDKVALLIGNMNYREHPKLKAPLVDVYELTNLLR-QLDFK---VVSLLD--------LTEYEMRNAVDEFLLLLDKGVY   70 (390)
T ss_dssp             BSCEEEEEEECCCCSSSCCCSTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHHHHHTCCTTCE
T ss_pred             CCCCEEEEEEecCCCCcccCCChHHHHHHHHHHHH-HcCCe---EEEeec--------CCHHHHHHHHHHHHhhCCCCCE
Confidence            46899999999944445689999999999999997 58996   667776        6999999999999999999999


Q ss_pred             EEEEEeccccccCCCCCCCCCCCcceeeccCCCC----CCCChHHHHHHHHhccCCCCCeEEEEEeCCCCCCCC
Q 024329          177 LVFHYSGHGSRQKDYNKDELDGFDETICPLDHET----EGPIIDDEINATIVRPLPRGAKLHAIIDSCYSGTVL  246 (269)
Q Consensus       177 lvfYFSGHG~~~~d~~gde~dG~de~L~p~D~~~----~g~I~~deL~~~L~~~l~~g~~l~vIlD~C~SG~~~  246 (269)
                      ++|||||||.+..   |      ..||+|.|...    ...+..++|.+.+. .+ .++..++|||||+++...
T Consensus        71 ~l~yfsGHG~~~~---g------~~yL~p~Da~~~~~~~~~isl~~Ll~~l~-~~-~~K~kL~ILDACrg~~~~  133 (390)
T 3uoa_B           71 GLLYYAGHGYENF---G------NSFMVPVDAPNPYRSENCLCVQNILKLMQ-EK-ETGLNVFLLDMCRKRNDY  133 (390)
T ss_dssp             EEEEEESCEEEET---T------EEEECCTTCCSSCCGGGSEEHHHHHHHHH-HT-TCSEEEEEEESCCCCCTT
T ss_pred             EEEEEecCccccC---C------cceEEecCCCccccccceeeHHHHHHHHH-hc-CCCceEEEEECCCCCCcc
Confidence            9999999999852   1      24899999863    23577888888774 34 346678999999996443

>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...

Probab=99.43  E-value=2.3e-12  Score=110.60  Aligned_cols=122  Identities=23%  Similarity=0.292  Sum_probs=91.3

Q ss_pred             CceEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHh--CCCCC
Q 024329           98 GRKKALLCGVTYNDTNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQD--CQPGD  175 (269)
Q Consensus        98 ~~k~ALlIGInY~~~~~~L~g~~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~--~~~gD  175 (269)
                      +++.|||||+..+....++.|+.+||+.|+++|+ .+||.   |.+..|        .|+++|+++|+++.++  .+..|
T Consensus        42 ~~g~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~-~LgF~---V~~~~d--------lt~~em~~~l~~f~~~~d~~~~d  109 (178)
T 2h54_A           42 RTRLALIICNEEFDSIPRRTGAEVDITGMTMLLQ-NLGYS---VDVKKN--------LTASDMTTELEAFAHRPEHKTSD  109 (178)
T ss_dssp             CCCEEEEEECCCCSSSCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHHHHTCGGGGGCS
T ss_pred             cCCEEEEEehhhcCCCccCCCCHHHHHHHHHHHH-HCCCE---EEEecC--------CCHHHHHHHHHHHHhhhhcCCCC
Confidence            5789999999833445689999999999999996 58997   566666        6999999999999863  46789


Q ss_pred             EEEEEEeccccccCCCCCCCCCCCcceeeccCCC--CCCCChHHHHHHHHhcc----CCCCCeEEEEEeCCCCCCC
Q 024329          176 SLVFHYSGHGSRQKDYNKDELDGFDETICPLDHE--TEGPIIDDEINATIVRP----LPRGAKLHAIIDSCYSGTV  245 (269)
Q Consensus       176 ~lvfYFSGHG~~~~d~~gde~dG~de~L~p~D~~--~~g~I~~deL~~~L~~~----l~~g~~l~vIlD~C~SG~~  245 (269)
                      .++|||.|||.+.             .++..|..  ....+..++|.+.+...    | .++--++|||||+.+..
T Consensus       110 ~~v~~~lsHG~~g-------------~i~g~D~~~~~~~~v~l~~I~~~f~~~~CpsL-~gKPKlffiqACRg~~~  171 (178)
T 2h54_A          110 STFLVFMSHGIRE-------------GICGKKHSEQVPDILQLNAIFNMLNTKNCPSL-KDKPKVIIIQACRGDSP  171 (178)
T ss_dssp             CEEEEEESCBCSS-------------CEECTTCCSSSCCEECHHHHHHHHSTTTCGGG-TTSCEEEEEESCSSSBC
T ss_pred             EEEEEEecCCCCC-------------eEEeecCCcccCcEEEHHHHHHHHhhcCChhh-cCCceEEEEECCCCCCC
Confidence            9999999999862             25556542  11246667777766321    2 23444699999997654

>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A

Probab=99.22  E-value=6.3e-11  Score=106.27  Aligned_cols=118  Identities=17%  Similarity=0.164  Sum_probs=89.5

Q ss_pred             CCceEEEEEeeC-CCC--CCCCCCChHHHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhC-C
Q 024329           97 YGRKKALLCGVT-YND--TNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDC-Q  172 (269)
Q Consensus        97 ~~~k~ALlIGIn-Y~~--~~~~L~g~~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~-~  172 (269)
                      .++..|||||+. |..  ...++.|+.+|++.|+++|+ .+||.   |.+..|        .|+++|+++|+++.+.. +
T Consensus        14 ~~rg~aLIInn~~f~~~~~l~~r~g~~~D~~~l~~~f~-~LgF~---V~~~~d--------lt~~em~~~l~~~~~~~~~   81 (250)
T 2j32_A           14 PEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFR-NLKYE---VRNKND--------LTREEIVELMRDVSKEDHS   81 (250)
T ss_dssp             SEEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHHHHTSCCT
T ss_pred             CCccEEEEEechhcCCCCCCcCCCCCHHHHHHHHHHHH-HCCCE---EEEEeC--------CCHHHHHHHHHHHHHhhcc
Confidence            467899999997 653  23688999999999999996 58996   566666        69999999999998774 6


Q ss_pred             CCCEEEEEEeccccccCCCCCCCCCCCcceeeccCCCCCCCChHHHHHHHHhcc----CCCCCeEEEEEeCCCCCC
Q 024329          173 PGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVRP----LPRGAKLHAIIDSCYSGT  244 (269)
Q Consensus       173 ~gD~lvfYFSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~~deL~~~L~~~----l~~g~~l~vIlD~C~SG~  244 (269)
                      ..|.++|||.|||..     |        .+++.|.    .+.-++|.+.+...    +. ++--++|||||....
T Consensus        82 ~~d~~v~~~lsHG~~-----g--------~i~~~D~----~v~l~~i~~~f~~~~cp~L~-gKPKlf~iqACRg~~  139 (250)
T 2j32_A           82 KRSSFVCVLLSHGEE-----G--------IIFGTNG----PVDLKKITNFFRGDRCRSLT-GKPKLFIIQACRGTE  139 (250)
T ss_dssp             TEEEEEEEEESCEET-----T--------EEEETTE----EEEHHHHHHTTSTTTCGGGT-TSCEEEEEESCSEEE
T ss_pred             CCCEEEEEECCCCCC-----C--------eEEecCC----cEEHHHHHHHhccccChhHc-CCCeEEEEecccCCc
Confidence            689999999999983     1        4667763    56667776666321    32 333369999998443

>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}

Probab=99.19  E-value=1.3e-10  Score=107.21  Aligned_cols=122  Identities=22%  Similarity=0.265  Sum_probs=91.7

Q ss_pred             CceEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHh--CCCCC
Q 024329           98 GRKKALLCGVTYNDTNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQD--CQPGD  175 (269)
Q Consensus        98 ~~k~ALlIGInY~~~~~~L~g~~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~--~~~gD  175 (269)
                      +++.|||||+..+.....+.|+.+|++.|+++|+ .+||.   |.+..|        .|.++|+++|+++.+.  ....|
T Consensus        59 ~~r~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~-~LGF~---V~~~~d--------lt~~em~~~l~~f~~~~dh~~~d  126 (302)
T 3e4c_A           59 RTRLALIICNEEFDSIPRRTGAEVDITGMTMLLQ-NLGYS---VDVKKN--------LTASDMTTELEAFAHRPEHKTSD  126 (302)
T ss_dssp             CCCEEEEEECCSCSSSCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHHHHTCGGGGGCS
T ss_pred             CccEEEEEECcCCCCCCCCCCcHHHHHHHHHHHH-HCCCE---EEEeeC--------CCHHHHHHHHHHHHhhhccCCCC
Confidence            4689999999833345789999999999999996 58997   566666        6999999999999763  45689


Q ss_pred             EEEEEEeccccccCCCCCCCCCCCcceeeccCCCC--CCCChHHHHHHHHhc----cCCCCCeEEEEEeCCCCCCC
Q 024329          176 SLVFHYSGHGSRQKDYNKDELDGFDETICPLDHET--EGPIIDDEINATIVR----PLPRGAKLHAIIDSCYSGTV  245 (269)
Q Consensus       176 ~lvfYFSGHG~~~~d~~gde~dG~de~L~p~D~~~--~g~I~~deL~~~L~~----~l~~g~~l~vIlD~C~SG~~  245 (269)
                      .++|||.|||.+.             ++++.|...  ...+..++|.+.+..    .| .++--++|||||+....
T Consensus       127 ~~vv~~lsHG~~~-------------~i~g~D~~~~~~~~v~l~~I~~~F~~~~CpsL-~gKPKlffIQACRG~~~  188 (302)
T 3e4c_A          127 STFLVFMSHGIRE-------------GICGKKHSEQVPDILQLNAIFNMLNTKNCPSL-KDKPKVIIIQAARGDSP  188 (302)
T ss_dssp             CEEEEEEEEEETT-------------EEECTTCCSSSCCEECHHHHHHHTSTTTCGGG-TTSCEEEEEEEECSSSC
T ss_pred             EEEEEEeccCcCC-------------eEEeecccccCCcEEEHHHHHHHHhhhcchhh-cCCccEEEEECCCCCCC
Confidence            9999999999962             466666421  235667778777632    12 23333699999996554

>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B

Probab=99.18  E-value=1.2e-10  Score=105.84  Aligned_cols=119  Identities=18%  Similarity=0.219  Sum_probs=89.9

Q ss_pred             CCceEEEEEeeC-CCC-CCCCCCChHHHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHh-CCC
Q 024329           97 YGRKKALLCGVT-YND-TNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQD-CQP  173 (269)
Q Consensus        97 ~~~k~ALlIGIn-Y~~-~~~~L~g~~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~-~~~  173 (269)
                      .++..||||++. |.. ...++.|+.+|++.|+++|+ .+||.   |.+..|        .|.++|+++|+++.+. ...
T Consensus        30 ~~rg~aLIInn~~f~~~~l~~R~g~~~Da~~L~~~f~-~LGF~---V~~~~d--------lt~~em~~~l~~~~~~dh~~   97 (272)
T 1m72_A           30 KHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLK-TLGFK---VTVFPN--------LKSEEINKFIQQTAEMDHSD   97 (272)
T ss_dssp             SEEEEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHHHHTSCCTT
T ss_pred             CCCCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHH-HCCCE---EEEecC--------cCHHHHHHHHHHHHHhhcCC
Confidence            357899999997 654 24689999999999999996 58996   566666        6999999999999876 467


Q ss_pred             CCEEEEEEeccccccCCCCCCCCCCCcceeeccCCCCCCCChHHHHHHHHhc----cCCCCCeEEEEEeCCCCCCC
Q 024329          174 GDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVR----PLPRGAKLHAIIDSCYSGTV  245 (269)
Q Consensus       174 gD~lvfYFSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~~deL~~~L~~----~l~~g~~l~vIlD~C~SG~~  245 (269)
                      .|.++|||.|||..             .+|++.|.    .+..++|.+.+..    .+ .++--++|||||....+
T Consensus        98 ~d~~v~~~lsHG~~-------------~~i~~~D~----~v~l~~i~~~f~~~~cpsL-~gKPKlffiqACRg~~~  155 (272)
T 1m72_A           98 ADCLLVAVLTHGEL-------------GMLYAKDT----HYKPDNLWYYFTADKCPTL-AGKPKLFFIQACQGDRL  155 (272)
T ss_dssp             EEEEEEEEESCEET-------------TEEECSSS----EECTTHHHHTTSTTTCGGG-TTSCEEEEEESCSSSBC
T ss_pred             CCEEEEEEcCCCCC-------------CEEEecCC----cEEHHHHHHHhccccChhh-cCCceEEEEeCCCCCcc
Confidence            89999999999973             26888885    3555566665521    12 23333699999995433

>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*

Probab=99.17  E-value=1.5e-10  Score=106.89  Aligned_cols=120  Identities=13%  Similarity=0.192  Sum_probs=90.4

Q ss_pred             CCCceEEEEEeeC-CCCC--CCCCCChHHHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhC-
Q 024329           96 VYGRKKALLCGVT-YNDT--NYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDC-  171 (269)
Q Consensus        96 ~~~~k~ALlIGIn-Y~~~--~~~L~g~~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~-  171 (269)
                      ..+++.|||||+. |...  ...+.|+.+|++.|+++|+ .+||.   |.+..|        .|+++|+++|+++.+.. 
T Consensus        66 ~~~rg~aLIInN~~f~~~~~L~~R~G~~~Da~~L~~~f~-~LGF~---V~~~~d--------lt~~em~~~l~~~~~~~h  133 (305)
T 1f1j_A           66 FEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFR-SLGFD---VIVYND--------CSCAKMQDLLKKASEEDH  133 (305)
T ss_dssp             SSEEEEEEEEECCCCCTTTTCCCCTTHHHHHHHHHHHHH-HHTEE---EEEEES--------CCHHHHHHHHHHHHHSCG
T ss_pred             CCCCCEEEEEechhcCCCccCccCCCcHHHHHHHHHHHH-HCCCE---EEEecC--------cCHHHHHHHHHHHHHhhc
Confidence            3467899999997 6542  2467899999999999996 58996   566666        69999999999988763 


Q ss_pred             CCCCEEEEEEeccccccCCCCCCCCCCCcceeeccCCCCCCCChHHHHHHHHhc----cCCCCCeEEEEEeCCCCCCC
Q 024329          172 QPGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVR----PLPRGAKLHAIIDSCYSGTV  245 (269)
Q Consensus       172 ~~gD~lvfYFSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~~deL~~~L~~----~l~~g~~l~vIlD~C~SG~~  245 (269)
                      ...|.++|||.|||..             .+|++.|.    .+..++|.+.+..    .+ .++--++|||||+...+
T Consensus       134 ~~~d~~vv~ilsHG~~-------------~~i~g~D~----~v~l~~I~~~f~~~~CpsL-~gKPKlffiQACRG~~~  193 (305)
T 1f1j_A          134 TNAACFACILLSHGEE-------------NVIYGKDG----VTPIKDLTAHFRGDRSKTL-LEKPKLFFIQACRGTEL  193 (305)
T ss_dssp             GGEEEEEEEEESCEET-------------TEEECSSS----EEEHHHHHHTTSTTTCGGG-TTSCEEEEEESCCSSBC
T ss_pred             CCCCEEEEEEecCCCC-------------CeEEecCC----eEEHHHHHHHhhhccChhh-cCCceEEEeccccCCcc
Confidence            5679999999999985             26888884    4666677665521    12 23333699999986553

>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A

Probab=99.11  E-value=4.2e-10  Score=102.55  Aligned_cols=119  Identities=17%  Similarity=0.168  Sum_probs=91.7

Q ss_pred             CCCceEEEEEeeC-CCC--CCCCCCChHHHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHh-C
Q 024329           96 VYGRKKALLCGVT-YND--TNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQD-C  171 (269)
Q Consensus        96 ~~~~k~ALlIGIn-Y~~--~~~~L~g~~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~-~  171 (269)
                      ..++..||||++. |..  ...++.|+.+|++.|+++|+ .+||.   |.+..|        .|.++|+++|+++.+. .
T Consensus        41 ~~~rg~aLIInN~~F~~~~~l~~R~Gt~~D~~~L~~~f~-~LGF~---V~~~~d--------lt~~em~~~l~~f~~~dh  108 (277)
T 4ehd_A           41 YPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFR-NLKYE---VRNKND--------LTREEIVELMRDVSKEDH  108 (277)
T ss_dssp             SSEEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHHHHTSCC
T ss_pred             CCCCCEEEEEEchhcCCcCCCCCCCCCHHHHHHHHHHHH-HCCCE---EEEecC--------CCHHHHHHHHHHHHhhcc
Confidence            3577899999997 653  24578999999999999996 58996   666666        6999999999999875 5


Q ss_pred             CCCCEEEEEEeccccccCCCCCCCCCCCcceeeccCCCCCCCChHHHHHHHHhc----cCCCCCeEEEEEeCCCCCC
Q 024329          172 QPGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVR----PLPRGAKLHAIIDSCYSGT  244 (269)
Q Consensus       172 ~~gD~lvfYFSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~~deL~~~L~~----~l~~g~~l~vIlD~C~SG~  244 (269)
                      ...|.++++|.|||.+             .+|++.|.    .+..++|.+.+..    .| .++--++|||||+...
T Consensus       109 ~~~d~~vv~ilSHG~~-------------g~i~g~D~----~v~l~~I~~~f~~~~CpsL-~gKPKlffiQACRG~~  167 (277)
T 4ehd_A          109 SKRSSFVCVLLSHGEE-------------GIIFGTNG----PVDLKKITNFFRGDRCRSL-TGKPKLFIIQACRGTE  167 (277)
T ss_dssp             TTEEEEEEEEESCEET-------------TEEEETTE----EEEHHHHHHTTSTTTCGGG-TTSCEEEEEESCCSSB
T ss_pred             cCCCEEEEEEEcCCCC-------------CEEEEeCC----cEeHHHHHHHhhhccCchh-cCCccEEEEecCCCCc
Confidence            6789999999999996             16888885    4667777766632    12 2333369999998543

>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}

Probab=99.11  E-value=4.3e-10  Score=104.27  Aligned_cols=122  Identities=16%  Similarity=0.172  Sum_probs=90.6

Q ss_pred             CceEEEEEeeC-CCCCCCCCCChHHHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhC-C-CC
Q 024329           98 GRKKALLCGVT-YNDTNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDC-Q-PG  174 (269)
Q Consensus        98 ~~k~ALlIGIn-Y~~~~~~L~g~~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~-~-~g  174 (269)
                      ++..||||++. |......+.|+.+|++.|+++|+ .+||.   |.+..|        .|.++|+++|+++.+.. . ..
T Consensus        60 ~rg~aLIInN~~F~~~~~~R~Gt~~D~~~L~~~f~-~LGF~---V~~~~d--------lt~~em~~~l~~f~~~~h~~~~  127 (316)
T 2fp3_A           60 NRGVLLMVNIMDYPDQNRRRIGAEKDSKSLIHLFQ-ELNFT---IFPYGN--------VNQDQFFKLLTMVTSSSYVQNT  127 (316)
T ss_dssp             CSEEEEEEECCCCSSTTSCCTTHHHHHHHHHHHHH-HTTEE---EEEECS--------CCHHHHHHHHHHHHTSHHHHTC
T ss_pred             CCcEEEEEeCcccCCCCCCCCCcHHHHHHHHHHHH-HCCCE---EEEccC--------CCHHHHHHHHHHHHHHhhcCCC
Confidence            78999999987 65322789999999999999996 68996   566666        69999999999998765 3 68


Q ss_pred             CEEEEEEeccccccCCCCCCCCCCCcceeeccCCCCCCCChHHHHHHHHhc----cCCCCCeEEEEEeCCCCCC
Q 024329          175 DSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVR----PLPRGAKLHAIIDSCYSGT  244 (269)
Q Consensus       175 D~lvfYFSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~~deL~~~L~~----~l~~g~~l~vIlD~C~SG~  244 (269)
                      |.++++|.|||.+...         +.+|++.|..   .+..++|.+.+..    .| .++--++|||||....
T Consensus       128 D~~vv~ilSHG~~~~g---------~g~i~g~D~~---~v~l~~I~~~f~~~~CpsL-~gKPKlffiQACRG~~  188 (316)
T 2fp3_A          128 ECFVMVLMTHGNSVEG---------KEKVEFRDGS---VVDMQKIKDHFQTAKCPYL-VNKPKVLMFPFARGDE  188 (316)
T ss_dssp             SCEEEEEESCEECCTT---------CCEEECTTSC---EEEHHHHHHTTSTTTCGGG-TTSCEEEEESCC----
T ss_pred             CEEEEEEccCCCccCC---------CCEEEeecCc---EEeHHHHHHHhccccChhh-cCCceEEEEecCCCCc
Confidence            9999999999997531         2478898853   3666777766632    12 2333369999998644

>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}

Probab=99.11  E-value=2.5e-10  Score=105.65  Aligned_cols=119  Identities=18%  Similarity=0.200  Sum_probs=90.5

Q ss_pred             CCceEEEEEeeC-CCC-CCCCCCChHHHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHh-CCC
Q 024329           97 YGRKKALLCGVT-YND-TNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQD-CQP  173 (269)
Q Consensus        97 ~~~k~ALlIGIn-Y~~-~~~~L~g~~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~-~~~  173 (269)
                      .++..||||++. |.. ....+.|+.+|++.|+++|+ .+||.   |.+..|        .|+++|+++|+++.+. ...
T Consensus        58 ~~rg~aLIInN~~F~~~~l~~R~Gt~~Da~~L~~~f~-~LGF~---V~~~~d--------lt~~em~~~l~~f~~~dh~~  125 (310)
T 2nn3_C           58 KHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLK-TLGFK---VTVFPN--------LKSEEINKFIQQTAEMDHSD  125 (310)
T ss_dssp             SBCCEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHHHHSSCGGG
T ss_pred             CCcCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHH-HCCCE---EEEecC--------CCHHHHHHHHHHHHHhccCC
Confidence            457899999997 653 34689999999999999996 58996   666666        6999999999999875 467


Q ss_pred             CCEEEEEEeccccccCCCCCCCCCCCcceeeccCCCCCCCChHHHHHHHHhc----cCCCCCeEEEEEeCCCCCCC
Q 024329          174 GDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVR----PLPRGAKLHAIIDSCYSGTV  245 (269)
Q Consensus       174 gD~lvfYFSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~~deL~~~L~~----~l~~g~~l~vIlD~C~SG~~  245 (269)
                      .|.++|||.|||..             .+|++.|.    .+..++|.+.+..    .+ .++--++|||||....+
T Consensus       126 ~D~~vv~ilSHG~~-------------g~i~g~D~----~v~l~~I~~~f~~~~CpsL-~gKPKlffiQACRG~~~  183 (310)
T 2nn3_C          126 ADCLLVAVLTAGEL-------------GMLYAKDT----HYKPDNLWYYFTADKCPTL-AGKPKLFFIQACQGDRL  183 (310)
T ss_dssp             BSCEEEEEEEEEET-------------TEEECSSC----EECTHHHHGGGSTTTCGGG-TTSCEEEEEEEECCCCC
T ss_pred             CCEEEEEEeCCCCC-------------CEEEecCC----cEEHHHHHHHhccccChhh-cCCceEEEEecccCCcc
Confidence            89999999999973             26888885    3555666655521    12 23333699999986444

>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*

Probab=99.10  E-value=7.7e-10  Score=100.76  Aligned_cols=119  Identities=18%  Similarity=0.189  Sum_probs=90.9

Q ss_pred             CCCceEEEEEeeC-CCC--CCCCCCChHHHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHh-C
Q 024329           96 VYGRKKALLCGVT-YND--TNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQD-C  171 (269)
Q Consensus        96 ~~~~k~ALlIGIn-Y~~--~~~~L~g~~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~-~  171 (269)
                      ..++..||||++. |..  ...++.|+.+|++.|+++|+ .+||.   |.+..|        .|.++|+++|+++.+. .
T Consensus        18 ~~~rg~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~f~-~LGF~---V~~~~d--------lt~~em~~~l~~~~~~~h   85 (278)
T 3od5_A           18 HRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFS-DLGFE---VKCFND--------LKAEELLLKIHEVSTVSH   85 (278)
T ss_dssp             SSBCCEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHHHHHSCC
T ss_pred             CCCcCEEEEEeccccCCCCCCCCCCCCHHHHHHHHHHHH-HCCCE---EEEecC--------CCHHHHHHHHHHHHhhcc
Confidence            3467899999997 653  34688999999999999996 58996   566666        6999999999998654 4


Q ss_pred             CCCCEEEEEEeccccccCCCCCCCCCCCcceeeccCCCCCCCChHHHHHHHHhc----cCCCCCeEEEEEeCCCCCC
Q 024329          172 QPGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVR----PLPRGAKLHAIIDSCYSGT  244 (269)
Q Consensus       172 ~~gD~lvfYFSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~~deL~~~L~~----~l~~g~~l~vIlD~C~SG~  244 (269)
                      ...|.++++|.+||..             .+|++.|..    +..++|.+.+..    .| .++--++|||||....
T Consensus        86 ~~~d~~vv~ilSHG~~-------------g~i~g~D~~----v~l~~I~~~f~~~~CpsL-~gKPKlffiQACRG~~  144 (278)
T 3od5_A           86 ADADCFVCVFLSHGEG-------------NHIYAYDAK----IEIQTLTGLFKGDKCHSL-VGKPKIFIIQACRGNQ  144 (278)
T ss_dssp             TTBSCEEEEEESCEET-------------TEEECSSSE----EEHHHHHHTTSTTTCGGG-TTSCEEEEEESCCSSB
T ss_pred             cCCCEEEEEEECCCCC-------------CEEEEeCCe----EEHHHHHHHhccccChhh-cCCCcEEEEecCCCCc
Confidence            6789999999999984             158888753    777777766632    12 2333369999999543

>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A

Probab=99.07  E-value=1.1e-09  Score=99.40  Aligned_cols=127  Identities=19%  Similarity=0.148  Sum_probs=90.6

Q ss_pred             CCCceEEEEEeeC-CCC--CCCCCCChHHHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhC-
Q 024329           96 VYGRKKALLCGVT-YND--TNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDC-  171 (269)
Q Consensus        96 ~~~~k~ALlIGIn-Y~~--~~~~L~g~~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~-  171 (269)
                      ..++..||||++. |..  ...++.|+.+|++.|+++|+ .+||.   |.+..|        .|.++|+++|+++.+.. 
T Consensus        18 ~~~rg~aLIInn~~f~~~~~l~~R~Gt~~D~~~L~~~f~-~LgF~---V~~~~d--------lt~~em~~~l~~~~~~~h   85 (277)
T 1nw9_B           18 MEPCGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFS-SLHFM---VEVKGD--------LTAKKMVLALLELARQDH   85 (277)
T ss_dssp             CSSCEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHH-HTTEE---EEEEES--------CCHHHHHHHHHHHHHSCC
T ss_pred             CCcccEEEEEeCcccCCCCCCCCCCCcHHHHHHHHHHHH-HCCCE---EEEEcC--------CCHHHHHHHHHHHHHhhc
Confidence            3467899999987 653  23578999999999999996 58996   566666        69999999999998764 


Q ss_pred             CCCCEEEEEEeccccccCCCCCCCCCCCcceeeccCCCCCCCChHHHHHHHHhc----cCCCCCeEEEEEeCCCCCC
Q 024329          172 QPGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVR----PLPRGAKLHAIIDSCYSGT  244 (269)
Q Consensus       172 ~~gD~lvfYFSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~~deL~~~L~~----~l~~g~~l~vIlD~C~SG~  244 (269)
                      +..|.++++|.|||.+..   +.   +.+..+.+.|..   .+..++|.+.+..    .| .++--++|||||....
T Consensus        86 ~~~D~~vv~ilSHG~~~~---~~---~~~g~iy~~D~~---~v~l~~i~~~f~~~~CpsL-~gKPKlffiQACRG~~  152 (277)
T 1nw9_B           86 GALDCCVVVILSHGCQAS---HL---QFPGAVYGTDGC---PVSVEKIVNIFNGTSCPSL-GGKPKLFFIQACGGEQ  152 (277)
T ss_dssp             TTCSEEEEEEEEEEECCC---CS---SSCCEEECTTSC---EEEHHHHHHTTCTTTCGGG-TTSCEEEEEEEEC---
T ss_pred             ccCCeEEEEEeCCCCccc---cc---cCCCcEEecCCc---eeeHHHHHHHhcccCChhH-cCCCcEEEEeccCCCc
Confidence            567999999999998742   11   122356677642   4666677665521    12 2333369999998544

>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A

Probab=99.07  E-value=1.3e-10  Score=104.95  Aligned_cols=118  Identities=19%  Similarity=0.229  Sum_probs=80.5

Q ss_pred             CCceEEEEEeeC-CCC-CCCCCCChHHHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHh-CCC
Q 024329           97 YGRKKALLCGVT-YND-TNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQD-CQP  173 (269)
Q Consensus        97 ~~~k~ALlIGIn-Y~~-~~~~L~g~~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~-~~~  173 (269)
                      .++..||||++. |.. ...++.|+.+|++.|+++|+ .+||.   |.+..|        .|.++|+++|+++.+. .+.
T Consensus        18 ~~rg~aLIInn~~f~~~~l~~R~G~~~D~~~L~~~f~-~LGF~---V~~~~d--------lt~~em~~~l~~~~~~~h~~   85 (259)
T 3sir_A           18 KNRGMALIFNHEHFEVPTLKSRAGTNVDCENLTRVLK-QLDFE---VTVYKD--------CRYKDILRTIEYSASQNHSD   85 (259)
T ss_dssp             SEEEEEEEEEECCC-----------CCHHHHHHHHHH-HTTCE---EEEEEE--------CSHHHHHHHHHHHHTSCCTT
T ss_pred             CCccEEEEEeccccCCCCCCCCCCcHHHHHHHHHHHH-HCCCE---EEEEeC--------CCHHHHHHHHHHHHHhhccC
Confidence            467899999997 653 23577899999999999996 58997   566666        6899999999998865 567


Q ss_pred             CCEEEEEEeccccccCCCCCCCCCCCcceeeccCCCCCCCChHHHHHHHHhc----cCCCCCeEEEEEeCCCCCC
Q 024329          174 GDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVR----PLPRGAKLHAIIDSCYSGT  244 (269)
Q Consensus       174 gD~lvfYFSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~~deL~~~L~~----~l~~g~~l~vIlD~C~SG~  244 (269)
                      .|.++|+|.|||.+.             +|++.|.    .+..++|.+.+..    .| .++--++|||||+...
T Consensus        86 ~d~~v~~~lsHG~~g-------------~i~~~D~----~v~l~~i~~~f~~~~cpsL-~gKPKlf~iQACRG~~  142 (259)
T 3sir_A           86 SDCILVAILSHGEMG-------------YIYAKDT----QYKLDNIWSFFTANHCPSL-AGKPKLFFIQACQGDR  142 (259)
T ss_dssp             EEEEEEEEEECTTCC-------------CCCCTTH----HHHHHHTTGGGSTTTCGGG-SSSCEEEEEEEETTSC
T ss_pred             CCEEEEEEecCCCCC-------------eEEeCCC----cEEHHHHHHHhhhccCccc-cCCCCEEEEecCCCCc
Confidence            899999999999961             4667763    2444454443421    11 2333369999999654

>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*

Probab=99.02  E-value=2.6e-09  Score=96.94  Aligned_cols=120  Identities=15%  Similarity=0.130  Sum_probs=90.0

Q ss_pred             CCceEEEEEeeC-CCCC---------CCCCCChHHHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHH
Q 024329           97 YGRKKALLCGVT-YNDT---------NYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRW  166 (269)
Q Consensus        97 ~~~k~ALlIGIn-Y~~~---------~~~L~g~~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~  166 (269)
                      .++.+||||++. |...         ..+..|+.+|++.|+++|+ .+||.   |.+..|        .|.++|+++|++
T Consensus        15 ~~rG~aLIInn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~-~LGF~---V~~~~d--------lt~~em~~~l~~   82 (271)
T 3h11_B           15 KPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFE-ELHFE---IKPHDD--------CTVEQIYEILKI   82 (271)
T ss_dssp             SSCCEEEEEECCCCSHHHHTCGGGTTCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHH
T ss_pred             CCCCEEEEEEchhcCcccccccccccCCCCCCcHHHHHHHHHHHH-HCCCE---EEEEeC--------CCHHHHHHHHHH
Confidence            467899999986 5531         3567899999999999996 58997   566666        699999999999


Q ss_pred             HHHh-CCCCCEEEEEEeccccccCCCCCCCCCCCcceeeccCCCCCCCChHHHHHHHHhc----cCCCCCeEEEEEeCCC
Q 024329          167 LAQD-CQPGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVR----PLPRGAKLHAIIDSCY  241 (269)
Q Consensus       167 L~~~-~~~gD~lvfYFSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~~deL~~~L~~----~l~~g~~l~vIlD~C~  241 (269)
                      +.+. -+..|.++++|.+||..             .+|++.|..   .+.-++|.+.+..    .| .++--++|||||.
T Consensus        83 ~~~~~h~~~d~~v~~ilSHG~~-------------g~i~g~D~~---~v~l~~I~~~f~~~~CpsL-~gKPKlffiQACR  145 (271)
T 3h11_B           83 YQLMDHSNMDCFICCILSHGDK-------------GIIYGTDGQ---EAPIYELTSQFTGLKCPSL-AGKPKVFFIQACQ  145 (271)
T ss_dssp             HHHSCCTTCSCEEEEEESCEET-------------TEEECTTSC---EEEHHHHHGGGSTTTCGGG-TTSCEEEEEESCC
T ss_pred             HHHhcCCCCCEEEEEEEcCCcC-------------CEEEecCCC---eecHHHHHHHhhhccChhh-cCCccEEEEeccC
Confidence            9875 35689999999999985             168888853   3555666665521    12 2333369999998


Q ss_pred             CCCC
Q 024329          242 SGTV  245 (269)
Q Consensus       242 SG~~  245 (269)
                      ....
T Consensus       146 G~~~  149 (271)
T 3h11_B          146 GDNY  149 (271)
T ss_dssp             SSBC
T ss_pred             CCcc
Confidence            6544

>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A

Probab=98.76  E-value=1.5e-07  Score=79.76  Aligned_cols=120  Identities=20%  Similarity=0.259  Sum_probs=90.0

Q ss_pred             CCceEEEEEeeC-CCCC--CCCCCChHHHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHH--hC
Q 024329           97 YGRKKALLCGVT-YNDT--NYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQ--DC  171 (269)
Q Consensus        97 ~~~k~ALlIGIn-Y~~~--~~~L~g~~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~--~~  171 (269)
                      .++..||||.+. |...  .....|+..|++.|+++|+ .+||.   |.+..|        .|.++|++.|+++.+  .-
T Consensus        31 ~~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~-~LgF~---V~~~~d--------lt~~em~~~l~~~~~~~dh   98 (167)
T 1pyo_A           31 RPRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFK-LLGYD---VHVLCD--------QTAQEMQEKLQNFAQLPAH   98 (167)
T ss_dssp             SSSEEEEEEECCCCCSSSCSCCCTTHHHHHHHHHHHHH-HTTEE---EEEEES--------CCHHHHHHHHHHHHTCGGG
T ss_pred             CCceEEEEEeCcccCCCCCCccCCCcHHHHHHHHHHHH-HCCCE---EEEeeC--------CCHHHHHHHHHHhhhhhhc
Confidence            467899999886 5432  2467999999999999996 68996   556665        699999999999987  34


Q ss_pred             CCCCEEEEEEeccccccCCCCCCCCCCCcceeeccCCCCCCCChHHHHHHHHhc----cCCCCCeEEEEEeCCCCCCC
Q 024329          172 QPGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVR----PLPRGAKLHAIIDSCYSGTV  245 (269)
Q Consensus       172 ~~gD~lvfYFSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~~deL~~~L~~----~l~~g~~l~vIlD~C~SG~~  245 (269)
                      ...|.++++|.+||..             .++++.|..   .+..++|.+.+..    .| .++--++||+||.....
T Consensus        99 ~~~dc~vv~ilSHG~~-------------g~i~g~D~~---~v~l~~i~~~F~~~~CpsL-~gKPKlffiQACRG~~~  159 (167)
T 1pyo_A           99 RVTDSCIVALLSHGVE-------------GAIYGVDGK---LLQLQEVFQLFDNANCPSL-QNKPKMFFIQACRGDET  159 (167)
T ss_dssp             GTSSEEEEEEESCEET-------------TEEECTTSC---EEEHHHHHHHTSTTTCGGG-TTSCEEEEEESCSSSBC
T ss_pred             cCCCEEEEEeCCCCCC-------------CeEEEeCCC---EEcHHHHHHHhcccCChhH-cCCCeEEEEECCCCCCC
Confidence            6789999999999985             157777742   3666777776632    13 24434699999986543

>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...

Probab=98.65  E-value=3.3e-07  Score=76.05  Aligned_cols=119  Identities=17%  Similarity=0.178  Sum_probs=87.4

Q ss_pred             CCceEEEEEeeC-CCCC--CCCCCChHHHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhC-C
Q 024329           97 YGRKKALLCGVT-YNDT--NYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDC-Q  172 (269)
Q Consensus        97 ~~~k~ALlIGIn-Y~~~--~~~L~g~~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~-~  172 (269)
                      .++..||||... |...  ..+..|+..|++.|+++|+ .+||.   |.+..|        .|.++|++.|+++.+.- +
T Consensus        14 ~~rG~alIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~-~LgF~---V~~~~d--------lt~~em~~~l~~~~~~dh~   81 (146)
T 2dko_A           14 PEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFR-NLKYE---VRNKND--------LTREEIVELMRDVSKEDHS   81 (146)
T ss_dssp             SEEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHHHHHSCCT
T ss_pred             CCceEEEEEeccccCCCCCcccCCCCHHHHHHHHHHHH-HCCCE---EEEeeC--------CCHHHHHHHHHHHHHhhcC
Confidence            356788888876 4421  2466899999999999996 58997   556666        69999999999998764 5


Q ss_pred             CCCEEEEEEeccccccCCCCCCCCCCCcceeeccCCCCCCCChHHHHHHHHhc----cCCCCCeEEEEEeCCCCCCC
Q 024329          173 PGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVR----PLPRGAKLHAIIDSCYSGTV  245 (269)
Q Consensus       173 ~gD~lvfYFSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~~deL~~~L~~----~l~~g~~l~vIlD~C~SG~~  245 (269)
                      ..|.++++|.+||..             ..++..|.    .+.-++|.+.+..    .| .++--++||+||.....
T Consensus        82 ~~dc~vv~ilSHG~~-------------g~i~g~D~----~~~l~~i~~~F~~~~CpsL-~gKPKlffiQACRG~~~  140 (146)
T 2dko_A           82 KRSSFVCVLLSHGEE-------------GIIFGTNG----PVDLKKITNFFRGDRCRSL-TGKPKLFIIQACRGTEL  140 (146)
T ss_dssp             TEEEEEEEEESCEET-------------TEEEETTE----EEEHHHHHHTTSTTTCGGG-TTSCEEEEEESCCSSBC
T ss_pred             CCCeEEEEeccCCCC-------------CEEEEeCC----cEeHHHHHHHhccccChhh-cCCCeEEEEECCCCCCC
Confidence            679999999999984             15777774    4666677665521    12 34444699999985443

>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*

Probab=98.59  E-value=7.1e-07  Score=75.34  Aligned_cols=120  Identities=15%  Similarity=0.133  Sum_probs=87.8

Q ss_pred             CCceEEEEEeeC-CCC---------CCCCCCChHHHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHH
Q 024329           97 YGRKKALLCGVT-YND---------TNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRW  166 (269)
Q Consensus        97 ~~~k~ALlIGIn-Y~~---------~~~~L~g~~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~  166 (269)
                      .++.+||||... |..         ......|+..|++.|+++|+ .+||.   |.+..|        .|.++|++.|++
T Consensus        21 ~~rG~~LIinn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~-~LgF~---V~~~~d--------lt~~em~~~l~~   88 (164)
T 1qtn_A           21 KPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFE-ELHFE---IKPHDD--------CTVEQIYEILKI   88 (164)
T ss_dssp             SSCCEEEEEECCCCHHHHHHCGGGTTCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHH
T ss_pred             CCceEEEEEechhcCCccccccccccCcCCCCcHHHHHHHHHHHH-HCCCE---EEEecC--------CCHHHHHHHHHH
Confidence            356799999875 442         13477999999999999996 68997   556555        699999999999


Q ss_pred             HHHh-CCCCCEEEEEEeccccccCCCCCCCCCCCcceeeccCCCCCCCChHHHHHHHHhc----cCCCCCeEEEEEeCCC
Q 024329          167 LAQD-CQPGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVR----PLPRGAKLHAIIDSCY  241 (269)
Q Consensus       167 L~~~-~~~gD~lvfYFSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~~deL~~~L~~----~l~~g~~l~vIlD~C~  241 (269)
                      +.+. -...|.++++|.+||..             ..++..|..   .+.-++|.+.+..    .| .|+--++||.||.
T Consensus        89 ~~~~dh~~~dc~vv~ilSHG~~-------------g~i~g~D~~---~v~i~~i~~~F~~~~CpsL-~gKPKlFfiQACR  151 (164)
T 1qtn_A           89 YQLMDHSNMDCFICCILSHGDK-------------GIIYGTDGQ---EAPIYELTSQFTGLKCPSL-AGKPKVFFIQACQ  151 (164)
T ss_dssp             HHHSCCTTCSCEEEEEESCEET-------------TEEECTTSC---EEEHHHHHGGGSTTTCGGG-TTSCEEEEEESCS
T ss_pred             HHHhhccCCCEEEEEeCCCCCC-------------CEEEeeCCC---EeeHHHHHHHhccccChhh-cCCCeEEEEECCC
Confidence            9765 36789999999999984             157777742   3555677665522    12 2443469999998


Q ss_pred             CCCC
Q 024329          242 SGTV  245 (269)
Q Consensus       242 SG~~  245 (269)
                      ....
T Consensus       152 G~~~  155 (164)
T 1qtn_A          152 GDNY  155 (164)
T ss_dssp             SSBC
T ss_pred             CCCc
Confidence            6443

>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A

Probab=98.35  E-value=3.8e-06  Score=71.54  Aligned_cols=118  Identities=13%  Similarity=0.195  Sum_probs=84.4

Q ss_pred             CCceEEEEEeeC-CCCC--CCCCCChHHHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHh-CC
Q 024329           97 YGRKKALLCGVT-YNDT--NYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQD-CQ  172 (269)
Q Consensus        97 ~~~k~ALlIGIn-Y~~~--~~~L~g~~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~-~~  172 (269)
                      ..+..||||... |...  ...-.|+..|++.|.++|. .+||.   |.+..|        .|.++|++.|+++.+. -.
T Consensus        42 ~~rG~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~F~-~LgF~---V~v~~d--------lt~~em~~~l~~~s~~dh~  109 (173)
T 2ql9_A           42 EKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFR-SLGFD---VIVYND--------CSCAKMQDLLKKASEEDHT  109 (173)
T ss_dssp             SEEEEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHH-HHTEE---EEEEES--------CCHHHHHHHHHHHHTSCCT
T ss_pred             CCceEEEEEeccccCCCCCCCCCCCcHHHHHHHHHHHH-HCCCE---EEEEeC--------CCHHHHHHHHHHHHHhhcc
Confidence            355678888765 4321  2345899999999999996 58996   555555        6999999999998765 35


Q ss_pred             CCCEEEEEEeccccccCCCCCCCCCCCcceeeccCCCCCCCChHHHHHHHHhc----cCCCCCeEEEEEeCCCCCC
Q 024329          173 PGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVR----PLPRGAKLHAIIDSCYSGT  244 (269)
Q Consensus       173 ~gD~lvfYFSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~~deL~~~L~~----~l~~g~~l~vIlD~C~SG~  244 (269)
                      ..|.+++++.+||...             .++..|.    .+.-++|.+.+..    .| .|+--++||.||....
T Consensus       110 ~~dc~vvvilSHG~~g-------------~I~g~D~----~~~i~~I~~~F~~~~CpsL-~gKPKlFfIQACRG~~  167 (173)
T 2ql9_A          110 NAACFACILLSHGEEN-------------VIYGKDG----VTPIKDLTAHFRGDRCKTL-LEKPKLFFIQACRGTE  167 (173)
T ss_dssp             TEEEEEEEEESCEETT-------------EEEETTE----EEEHHHHHGGGSTTTCGGG-TTSCEEEEEESCCSSB
T ss_pred             CCCeEEEeecCCCCCC-------------EEEEcCC----cEEHHHHHHHcCcccChhH-cCCCeEEEEECCCCCC
Confidence            6799999999999851             5777774    3556666655521    12 3443469999998544

>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}

Probab=98.26  E-value=1e-05  Score=69.32  Aligned_cols=118  Identities=19%  Similarity=0.191  Sum_probs=84.5

Q ss_pred             CCceEEEEEeeC-CCC--CCCCCCChHHHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHh-CC
Q 024329           97 YGRKKALLCGVT-YND--TNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQD-CQ  172 (269)
Q Consensus        97 ~~~k~ALlIGIn-Y~~--~~~~L~g~~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~-~~  172 (269)
                      .++.+||||.+. |..  ...+-.|+..|++.|+++|+ .+||.   |.+..|        .|.++|++.|+++.+. -.
T Consensus        42 ~~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~-~LGF~---V~~~~d--------lt~~em~~~l~~~~~~dh~  109 (179)
T 3p45_A           42 RRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFS-DLGFE---VKCFND--------LKAEELLLKIHEVSTVSHA  109 (179)
T ss_dssp             SBCCEEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHHHHTSCCT
T ss_pred             CccCEEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHH-HCCCE---EEEEeC--------CCHHHHHHHHHHHhhhhcC
Confidence            456789999886 442  34577999999999999996 59997   556666        6999999999998653 24


Q ss_pred             CCCEEEEEEeccccccCCCCCCCCCCCcceeeccCCCCCCCChHHHHHHHHhc----cCCCCCeEEEEEeCCCCCC
Q 024329          173 PGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVR----PLPRGAKLHAIIDSCYSGT  244 (269)
Q Consensus       173 ~gD~lvfYFSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~~deL~~~L~~----~l~~g~~l~vIlD~C~SG~  244 (269)
                      ..|.+++++..||..             ..++..|.    .+.-++|.+.+..    .| .++--++||.||....
T Consensus       110 ~~dc~vvvilSHG~~-------------g~I~g~D~----~v~l~~I~~~F~~~~CpsL-~gKPKlFfIQACRG~~  167 (179)
T 3p45_A          110 DADCFVCVFLSHGEG-------------NHIYAYDA----KIEIQTLTGLFKGDKCHSL-VGKPKIFIIQACRGNQ  167 (179)
T ss_dssp             TBSCEEEEEESCEET-------------TEEECSSS----EEEHHHHHGGGSGGGCGGG-TTSCEEEEEECC----
T ss_pred             CCCEEEEEEeccCCC-------------CEEEEECC----EEEHHHHHHhcccccChhh-CCCCcEEEEECCCCCC
Confidence            679999999999984             14777774    2666777766632    12 3444469999999543

>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A

Probab=97.88  E-value=3.5e-05  Score=69.86  Aligned_cols=109  Identities=15%  Similarity=0.138  Sum_probs=79.8

Q ss_pred             CCceEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHH--hCCCC
Q 024329           97 YGRKKALLCGVTYNDTNYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQ--DCQPG  174 (269)
Q Consensus        97 ~~~k~ALlIGInY~~~~~~L~g~~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~--~~~~g  174 (269)
                      .++-.||||-..           .+|++.|+++|+ .+||.   |.+..|        .|.++|++.|+++.+  .....
T Consensus        41 ~~rG~~LIinn~-----------~~D~~~L~~~f~-~LgF~---V~~~~d--------lt~~em~~~l~~~~~~~dh~~~   97 (272)
T 3h11_A           41 KPLGICLIIDCI-----------GNETELLRDTFT-SLGYE---VQKFLH--------LSMHGISQILGQFACMPEHRDY   97 (272)
T ss_dssp             SSSEEEEEEESS-----------CCCCSHHHHHHH-HHTEE---EEEEES--------CBHHHHHHHHHHHHTCGGGGGC
T ss_pred             CcceEEEEECCc-----------hHHHHHHHHHHH-HCCCE---EEEeeC--------CCHHHHHHHHHHHHhccccCCC
Confidence            355677777642           169999999996 58996   556666        699999999999986  46789


Q ss_pred             CEEEEEEeccccccCCCCCCCCCCCcceeeccCCCCCCCChHHHHHHHHhc----cCCCCCeEEEEEeCCCCC
Q 024329          175 DSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIVR----PLPRGAKLHAIIDSCYSG  243 (269)
Q Consensus       175 D~lvfYFSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~~deL~~~L~~----~l~~g~~l~vIlD~C~SG  243 (269)
                      |.++++|.+||..             .+|++.|.... .+.-++|.+.+..    .| .|+--++||+||...
T Consensus        98 d~~v~~ilSHG~~-------------g~i~g~D~~~~-~v~l~~i~~~f~~~~CpsL-~gKPKlffiQACRG~  155 (272)
T 3h11_A           98 DSFVCVLVSRGGS-------------QSVYGVDQTHS-GLPLHHIRRMFMGDSCPYL-AGKPKMFFIQNYVVS  155 (272)
T ss_dssp             SEEEEEEEEEEET-------------TEECBTSCCSS-CEEHHHHHHHHSTTTCGGG-TTSCEEEEEEEEEC-
T ss_pred             CEEEEEEEcCCCC-------------CeEEEEcCCcc-eEeHHHHHHHhccccChhh-cCCCcEEEEECCCCC
Confidence            9999999999984             15777775321 3666788777743    22 344446999999853

>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1

Probab=90.15  E-value=0.12  Score=37.47  Aligned_cols=34  Identities=26%  Similarity=0.614  Sum_probs=30.7

Q ss_pred             cccccCCCCCCceecCCCCceeecccccceeeccCC
Q 024329            3 SRVERCSGCGRQLWLPPQAVAARCYACRSVTSFPSS   38 (269)
Q Consensus         3 ~~~~~c~~c~~~~~~~~~~~~~~c~~c~~~~~~~~~   38 (269)
                      +-.++|+ |++.+-+..++.+.+|. |.++-++...
T Consensus         2 Y~vv~C~-C~~~~~~~~~~kT~~C~-CG~~~~~~k~   35 (71)
T 1gh9_A            2 YIIFRCD-CGRALYSREGAKTRKCV-CGRTVNVKDR   35 (71)
T ss_dssp             EEEEEET-TSCCEEEETTCSEEEET-TTEEEECCSS
T ss_pred             eEEEECC-CCCEEEEcCCCcEEECC-CCCeeeeceE
Confidence            5678999 99999999999999998 9999988864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	269
g1sc3.1	261	c.17.1.1 (A:,B:) Interleukin-1beta converting enzy	2e-04

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	269
d1nw9b_	277	Caspase-9 {Human (Homo sapiens) [TaxId: 9606]}	99.6
g1sc3.1	261	Interleukin-1beta converting enzyme (a cysteine pr	99.6
g1qtn.1	242	Caspase-8 {Human (Homo sapiens) [TaxId: 9606]}	99.46
d1m72a_	256	Caspase-1 {Fall armyworm (Spodoptera frugiperda) [	99.34
g1pyo.1	257	Caspase-2 {Human (Homo sapiens) [TaxId: 9606]}	99.29
g1nme.1	238	Apopain (caspase-3, cpp32) {Human (Homo sapiens) [	99.26
d1f1ja_	245	Caspase-7 {Human (Homo sapiens) [TaxId: 9606]}	99.16

>d1nw9b_ c.17.1.1 (B:) Caspase-9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Caspase-like
superfamily: Caspase-like
family: Caspase catalytic domain
domain: Caspase-9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.5e-15  Score=133.95  Aligned_cols=129  Identities=18%  Similarity=0.126  Sum_probs=84.7

Q ss_pred             CCceEEEEEeeC-CCCCC--CCCCChHHHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHH-hCC
Q 024329           97 YGRKKALLCGVT-YNDTN--YMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQ-DCQ  172 (269)
Q Consensus        97 ~~~k~ALlIGIn-Y~~~~--~~L~g~~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~-~~~  172 (269)
                      .++-+||||+++ |....  .+..|+.+||+.|+++|+ .+||.   |.++.|        +|+++|+++|.++.. ..+
T Consensus        19 ~prG~aLII~n~~f~~~~~l~~r~Ga~~Da~~l~~~l~-~lGF~---V~~~~n--------lt~~~~~~~l~~~~~~~~~   86 (277)
T d1nw9b_          19 EPCGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFS-SLHFM---VEVKGD--------LTAKKMVLALLELARQDHG   86 (277)
T ss_dssp             SSCEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHH-HTTEE---EEEEES--------CCHHHHHHHHHHHHHSCCT
T ss_pred             CcccEEEEEeCccCCCccCCCCCCCcHHHHHHHHHHHH-HCCCE---EEEeeC--------CCHHHHHHHHHHhhhhccc
Confidence            466799999997 64322  355789999999999995 68994   777777        689999999987766 467


Q ss_pred             CCCEEEEEEeccccccCCCCCCCCCCCcceeeccCCCCCCCChHHHHHHHHh-c---cCCCCCeEEEEEeCCCCCCCCC
Q 024329          173 PGDSLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIV-R---PLPRGAKLHAIIDSCYSGTVLD  247 (269)
Q Consensus       173 ~gD~lvfYFSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~~deL~~~L~-~---~l~~g~~l~vIlD~C~SG~~~d  247 (269)
                      ++|.+||||+|||.+....+         ++.+.+......+.-+++...+. .   .+ .++..++|||||++|.+..
T Consensus        87 ~~d~~v~~~~gHG~~~~~~~---------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l-~~kpki~~idaCr~~~~~~  155 (277)
T d1nw9b_          87 ALDCCVVVILSHGCQASHLQ---------FPGAVYGTDGCPVSVEKIVNIFNGTSCPSL-GGKPKLFFIQACGGEQKDH  155 (277)
T ss_dssp             TCSEEEEEEEEEEECCCCSS---------SCCEEECTTSCEEEHHHHHHTTCTTTCGGG-TTSCEEEEEEEEC------
T ss_pred             CCCEEEEEEeCCCccccccc---------ccCcccCCccccccHHHHHHHhHHhhhhhc-ccCcEEEEEecccCCcccc
Confidence            89999999999999754322         22222222112233334433221 1   22 3455679999999987644

>d1m72a_ c.17.1.1 (A:) Caspase-1 {Fall armyworm (Spodoptera frugiperda) [TaxId: 7108]}

class: Alpha and beta proteins (a/b)
fold: Caspase-like
superfamily: Caspase-like
family: Caspase catalytic domain
domain: Caspase-1
species: Fall armyworm (Spodoptera frugiperda) [TaxId: 7108]

Probab=99.34  E-value=3e-12  Score=112.42  Aligned_cols=117  Identities=19%  Similarity=0.226  Sum_probs=84.3

Q ss_pred             ceEEEEEeeC-CCCC-CCCCCChHHHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhC-CCCC
Q 024329           99 RKKALLCGVT-YNDT-NYMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDC-QPGD  175 (269)
Q Consensus        99 ~k~ALlIGIn-Y~~~-~~~L~g~~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~-~~gD  175 (269)
                      +-+||||++. |... ..++.|+.+||+.|+++|+ .+||.   |.++.|        .|+++|+++|+++.+.. +.+|
T Consensus        21 rG~aLIInN~~f~~~~~~~r~g~~~Da~~l~~~l~-~lGF~---V~~~~n--------lt~~~m~~~l~~~~~~~~~~~d   88 (256)
T d1m72a_          21 RGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLK-TLGFK---VTVFPN--------LKSEEINKFIQQTAEMDHSDAD   88 (256)
T ss_dssp             EEEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHHHHTSCCTTEE
T ss_pred             ccEEEEEeCCccCCCCCCCCCChHHHHHHHHHHHH-HCCCE---EEEEeC--------CCHHHHHHHHHHHhhhhccCCC
Confidence            3489999997 5432 3578999999999999996 69996   667777        68999999999998765 5679


Q ss_pred             EEEEEEeccccccCCCCCCCCCCCcceeeccCCCCCCCChHHHHHHHHh----ccCCCCCeEEEEEeCCCCCCC
Q 024329          176 SLVFHYSGHGSRQKDYNKDELDGFDETICPLDHETEGPIIDDEINATIV----RPLPRGAKLHAIIDSCYSGTV  245 (269)
Q Consensus       176 ~lvfYFSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~~deL~~~L~----~~l~~g~~l~vIlD~C~SG~~  245 (269)
                      .++|||+|||.+             .+|++.|..    +..+++...+.    ..+ .++--++|||||+...+
T Consensus        89 ~~vv~~~~HG~~-------------~~i~~~D~~----~~~~~~~~~~~~~~~~~L-~~KPKif~lqACRg~~~  144 (256)
T d1m72a_          89 CLLVAVLTHGEL-------------GMLYAKDTH----YKPDNLWYYFTADKCPTL-AGKPKLFFIQACQGDRL  144 (256)
T ss_dssp             EEEEEEESCEET-------------TEEECSSSE----ECTTHHHHTTSTTTCGGG-TTSCEEEEEESCSSSBC
T ss_pred             eEEEEEeccCcC-------------CEEEecCCc----ccchHHhhhhhhhhhHHH-cCCcEEEEEecCcCCcc
Confidence            999999999964             267888763    11122222111    122 23333699999997554

>d1f1ja_ c.17.1.1 (A:) Caspase-7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Caspase-like
superfamily: Caspase-like
family: Caspase catalytic domain
domain: Caspase-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=9.6e-11  Score=101.64  Aligned_cols=78  Identities=12%  Similarity=0.260  Sum_probs=64.0

Q ss_pred             CceEEEEEeeC-CCCCC--CCCCChHHHHHHHHHHHHHhhCCCCcceEEecCCCCCCCCCccHHHHHHHHHHHHHhC-CC
Q 024329           98 GRKKALLCGVT-YNDTN--YMLTGSINDVKSMWFLLVRMLGFPSDCVVILTEEEKNPYRIPTKQNIRTAMRWLAQDC-QP  173 (269)
Q Consensus        98 ~~k~ALlIGIn-Y~~~~--~~L~g~~nDA~~m~~~L~~~~Gf~~~~I~lLtd~e~~~~~~pTk~nI~~aL~~L~~~~-~~  173 (269)
                      ++-+||||++. |....  ..-.|+.+||+.|+++|+ .+||.   |.++.|        .|+++|+++|+++.+.. +.
T Consensus         9 ~rG~aLII~n~~f~~~~~l~~r~g~~~Da~~l~~~l~-~lGF~---V~~~~n--------l~~~em~~~l~~~~~~~~~~   76 (245)
T d1f1ja_           9 KLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFR-SLGFD---VIVYND--------CSCAKMQDLLKKASEEDHTN   76 (245)
T ss_dssp             EEEEEEEEECCCCCTTTTCCCCTTHHHHHHHHHHHHH-HHTEE---EEEEES--------CCHHHHHHHHHHHHHSCGGG
T ss_pred             cCcEEEEEeCcCCCCcCCCCCCCChHHHHHHHHHHHH-HCCCE---EEEecC--------CCHHHHHHHHHHHHHHhccC
Confidence            44599999997 65422  345789999999999997 59996   667777        68999999999998765 56


Q ss_pred             CCEEEEEEeccccc
Q 024329          174 GDSLVFHYSGHGSR  187 (269)
Q Consensus       174 gD~lvfYFSGHG~~  187 (269)
                      .|.++|||+|||..
T Consensus        77 ~~~~vv~~~~HG~~   90 (245)
T d1f1ja_          77 AACFACILLSHGEE   90 (245)
T ss_dssp             EEEEEEEEESCEET
T ss_pred             CceEEEEEeecccc
Confidence            68999999999985