Citrus Sinensis ID: 024332

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
Protein Sequence
MDGRFNSNSNPFTGEQEENDTTPENSSESPPSSSTYNDMMKMTSTSSPKKRRAMQKRVISVPIKEVEGSRLKGESAPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSSVDPSMLLITYSCEHNHPWPLPSTSRNHHHHHHNSKAAKPDRDPEPEPEPEPEPEPEHEEKFTDLADHDNALMTTSADEFTWFGEMETTTSTILESPIFADRSQSDCDSLSMFFPMREEDESLFADLGELPECSMVFRRHRNLGPEVQIC
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccEEEEEccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccHHHHccccccccccccccEEEEccccccccHHHEEEccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccHHHHHHcccccccHHEEEEcccccccEEEEc
Coil and Loop (DISEMBL)
mdgrfnsnsnpftgeqeendttpenssesppssstyndmmkmtstsspkkrRAMQKRVISvpikevegsrlkgesappsdswawrkygqkpikgspyprgyyrcssskgcparkqverssvdpsmLLITYscehnhpwplpstsrnhhhhhhnskaakpdrdpepepepepepepeheekftdladhdnalmttsadeftwfgemetttstilespifadrsqsdcdslsmffpmreeDESLFAdlgelpecsmvfrrhrnlgpevqic
Flexible Loop (DISEMBL)
mdgrfnsnsnpftgeqeendttpenssesppssstyndMMKMtstsspkkrramqkrvisvpikevegsrlkgesappsdswawrkygqkpikgspyprGYYRCSSSKGCPARKQVERSSVDPSMLLITYSCEHNHPWPLPSTSRNHHHHHHnskaakpdrdpePEPEPEPEPEPEHEEKFTDLADHDNALMTTSADEFTWFGEMETTTSTILESPIFADRSQSDCDSLSMFFPMREEDESLFADLGELPECSMVFRRhrnlgpevqic
Low Complexity Region (SEG)
MDGRFNSNSNPFTGEQEENDttpenssesppssstYNDMMKMTSTSSPKKRRAMQKRVISVPIKEVEGSRLKGESAPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSSVDPSMLLITYSCEHNHPWPLPSTSRNhhhhhhNSKAAKPDRDpepepepepepepeheeKFTDLADHDNALMTTSADEFTWFGEMETTTSTILESPIFADRSQSDCDSLSMFFPMREEDESLFADLGELPECSMVFRRHRNLGPEVQIC
Disordered region (IsUnstruct)
*********************************************************************************WAWRKYG***********GYYR*********************MLLITYSCEH***********************************************************TSADEFTWFGEMETTTSTILESPIFA************FF********LFADLGELPECSMVF*************
Disordered Region (DISOPRED)
****************************************************************************PPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSSVDPSMLLITYSCEHNH****************************************************************************************************EEDESLFADLGELPECSMVFRRHRNL****QIC
Disordered Region (DISEMBL)
**********************************TYNDM*****************RVISVPIKEVE**************WAWRKYGQKPIKGSPYPRGYY*****************SVDPSMLLITYSCEHNHPWPLPST************************************KFTDLADHDNALMTTSADEFTWFGEMETTTSTILESPIFADRSQSDCDSLSMFFPMREEDESLFADLGELPECSMVFRRHRNLGPEVQIC
Disordered Region (DISPRO)
**************************************************************************SAPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSSVDPSMLLITYSCEHN******************************************************************************************************EDESLFADLGELPECSMVFRRHRNLGPEVQIC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDGRFNSNSNPFTGEQEENDTTPENSSESPPSSSTYNDMMKMTSTSSPKKRRAMQKRVISVPIKEVEGSRLKGESAPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSSVDPSMLLITYSCEHNHPWPLPSTSRNHHHHHHNSKAAKPDRDPEPEPEPEPEPEPEHEEKFTDLADHDNALMTTSADEFTWFGEMETTTSTILESPIFADRSQSDCDSLSMFFPMREEDESLFADLGELPECSMVFRRHRNLGPEVQIC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	269	2.2.26 [Sep-21-2011]
Q9LP56	259	Probable WRKY transcripti	yes	no	0.843	0.876	0.575	2e-70
Q93WV5	271	Probable WRKY transcripti	no	no	0.799	0.793	0.504	6e-52
O64747	427	Probable WRKY transcripti	no	no	0.349	0.220	0.673	2e-33
Q9SA80	430	Probable WRKY transcripti	no	no	0.338	0.211	0.673	1e-32
O04609	298	WRKY transcription factor	no	no	0.475	0.429	0.430	1e-26
Q9FLX8	348	Probable WRKY transcripti	no	no	0.397	0.307	0.492	2e-25
Q9STX0	353	Probable WRKY transcripti	no	no	0.345	0.263	0.545	3e-25
O22176	317	Probable WRKY transcripti	no	no	0.460	0.391	0.442	7e-25
Q9FL92	1372	Probable WRKY transcripti	no	no	0.338	0.066	0.548	3e-24
O04336	380	Probable WRKY transcripti	no	no	0.323	0.228	0.574	1e-23

>sp|Q9LP56|WRK65_ARATH Probable WRKY transcription factor 65 OS=Arabidopsis thaliana GN=WRKY65 PE=2 SV=1

 Score =  265 bits (677), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 141/245 (57%), Positives = 173/245 (70%), Gaps = 18/245 (7%)

Query: 31  PSSSTYNDMMKMTSTSSPKK-RRAMQKRVISVPIKEVEGSRLKGESAPPSDSWAWRKYGQ 89
           P+SST+N M  + S+ SPK+ RR+++KRV++VP+KE+EGSR KG++ PPSDSWAWRKYGQ
Sbjct: 25  PNSSTFNGMKALISSHSPKRSRRSVEKRVVNVPMKEMEGSRHKGDTTPPSDSWAWRKYGQ 84

Query: 90  KPIKGSPYPRGYYRCSSSKGCPARKQVERSSVDPSMLLITYSCEHNHPWPLPSTSRNHHH 149
           KPIKGSPYPRGYYRCSS+KGCPARKQVERS  DP+M+LITY+ EHNHPWPL S++RN   
Sbjct: 85  KPIKGSPYPRGYYRCSSTKGCPARKQVERSRDDPTMILITYTSEHNHPWPLTSSTRNGPK 144

Query: 150 HHHNSKAAKPDRDPEPEPEPEPEPEPEHEEKFTDLADHDNALMTT--SADEFTWFGEMET 207
                K                    E + KF  L      + TT    DEF WF EMET
Sbjct: 145 PKPEPKPEP--------EPEVEPEAEEEDNKFMVLG---RGIETTPSCVDEFAWFTEMET 193

Query: 208 TTSTILESPIFADRSQ---SDCDSLSMFFPMREEDESLFADLGELPECSMVFR-RHRNLG 263
           T+STILESPIF+   +   S  D +++FFPM EEDESLFADLGELPECS+VFR R   +G
Sbjct: 194 TSSTILESPIFSSEKKTAVSGADDVAVFFPMGEEDESLFADLGELPECSVVFRHRSSVVG 253

Query: 264 PEVQI 268
            +V+I
Sbjct: 254 SQVEI 258

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.
Arabidopsis thaliana (taxid: 3702)

>sp|Q93WV5|WRK69_ARATH Probable WRKY transcription factor 69 OS=Arabidopsis thaliana GN=WRKY69 PE=2 SV=1

 Score =  204 bits (519), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 121/240 (50%), Positives = 152/240 (63%), Gaps = 25/240 (10%)

Query: 35  TYNDMM---------KMTSTSSPKKRRAMQKRVISVPIKEVEGSRLKGESAPPSDSWAWR 85
           TYND++            S  +PKKRR ++KRV+SVPI +VEGS+ +GE  PPSDSWAWR
Sbjct: 17  TYNDVVPESPSSCEDSKISKPTPKKRRNVEKRVVSVPIADVEGSKSRGEVYPPSDSWAWR 76

Query: 86  KYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSSVDPSMLLITYSCEHNHPWPLPSTSR 145
           KYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERS VDPS L+ITY+C+HNHP+  PS+S 
Sbjct: 77  KYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRVDPSKLMITYACDHNHPF--PSSSA 134

Query: 146 NHHHHHHNS---KAAKPDRDPEPEPEPEPEPEPEHEEKFTDLADHDNALMT----TSADE 198
           N   HH +S   K AK + + E E E       E      DL+  D+ L+     +   E
Sbjct: 135 NTKSHHRSSVVLKTAKKEEEYEEEEEELTVTAAEEPPAGLDLSHVDSPLLLGGCYSEIGE 194

Query: 199 FTWFGEMETTTSTILESPIFADRSQSDCDSLSMFFPMREEDESLFADLGELPECSMVFRR 258
           F WF +   ++S+   + +       D      F   +EEDESLF DLG+LP+C+ VFRR
Sbjct: 195 FGWFYDASISSSSGSSNFL-------DVTLERGFSVGQEEDESLFGDLGDLPDCASVFRR 247

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|O64747|WRK35_ARATH Probable WRKY transcription factor 35 OS=Arabidopsis thaliana GN=WRKY35 PE=2 SV=1

 Score =  142 bits (358), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 66/98 (67%), Positives = 75/98 (76%), Gaps = 4/98 (4%)

Query: 49  KKRRAMQKRVISVPIKEVEGSRLKGESAPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSK 108
           K+R++  K+V+ +P      SR  GE  P SD WAWRKYGQKPIKGSPYPRGYYRCSSSK
Sbjct: 186 KRRKSQAKKVVCIPAPAAMNSRSSGEVVP-SDLWAWRKYGQKPIKGSPYPRGYYRCSSSK 244

Query: 109 GCPARKQVERSSVDPSMLLITYSCEHNHPWPLPSTSRN 146
           GC ARKQVERS  DP+ML+ITY+ EHNHPWP   T RN
Sbjct: 245 GCSARKQVERSRTDPNMLVITYTSEHNHPWP---TQRN 279

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SA80|WRK14_ARATH Probable WRKY transcription factor 14 OS=Arabidopsis thaliana GN=WRKY14 PE=2 SV=2

 Score =  140 bits (353), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 62/92 (67%), Positives = 73/92 (79%), Gaps = 1/92 (1%)

Query: 49  KKRRAMQKRVISVPIKEVEGSRLKGESAPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSK 108
           K+R++  K+V+ +P      SR  GE  P SD WAWRKYGQKPIKGSP+PRGYYRCSSSK
Sbjct: 188 KRRKSQAKKVVCIPAPAAMNSRSSGEVVP-SDLWAWRKYGQKPIKGSPFPRGYYRCSSSK 246

Query: 109 GCPARKQVERSSVDPSMLLITYSCEHNHPWPL 140
           GC ARKQVERS  DP+ML+ITY+ EHNHPWP+
Sbjct: 247 GCSARKQVERSRTDPNMLVITYTSEHNHPWPI 278

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|O04609|WRK22_ARATH WRKY transcription factor 22 OS=Arabidopsis thaliana GN=WRKY22 PE=2 SV=1

 Score =  120 bits (301), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 68/158 (43%), Positives = 89/158 (56%), Gaps = 30/158 (18%)

Query: 43  TSTSSPKKRRAMQKRVISVPIKEVEGSRLKGESAPPSDSWAWRKYGQKPIKGSPYPRGYY 102
           ++TS  K+R+   K+V  V  + +            SD WAWRKYGQKPIKGSPYPRGYY
Sbjct: 103 SNTSRSKRRKIQHKKVCHVAAEALN-----------SDVWAWRKYGQKPIKGSPYPRGYY 151

Query: 103 RCSSSKGCPARKQVERSSVDPSMLLITYSCEHNHPWPLPSTSRNHHHHHHNSKAAKPDRD 162
           RCS+SKGC ARKQVER+  DP M ++TY+ EHNHP P           H NS A    + 
Sbjct: 152 RCSTSKGCLARKQVERNRSDPKMFIVTYTAEHNHPAPT----------HRNSLAGSTRQ- 200

Query: 163 PEPEPEPEPEPEPEHEEKFTDLADHDNALMTTSADEFT 200
                  +P  +   +   T +A + ++ + TSADEF 
Sbjct: 201 -------KPSDQQTSKSPTTTIATYSSSPV-TSADEFV 230

Transcription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 29, SIRK and its own promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLX8|WRK27_ARATH Probable WRKY transcription factor 27 OS=Arabidopsis thaliana GN=WRKY27 PE=2 SV=1

 Score =  115 bits (289), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 63/128 (49%), Positives = 76/128 (59%), Gaps = 21/128 (16%)

Query: 49  KKRRAMQKRVISVPIKEVEGSRLKGESAPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSK 108
           +KR+  QKR I    +E             SD WAWRKYGQKPIKGSPYPR YYRCSSSK
Sbjct: 145 RKRKNQQKRTICHVTQE----------NLSSDLWAWRKYGQKPIKGSPYPRNYYRCSSSK 194

Query: 109 GCPARKQVERSSVDPSMLLITYSCEHNHPWPLPSTSRNHHHHHHNSKAAKPDRDPEP-EP 167
           GC ARKQVERS++DP++ ++TY+ EH HP P           H NS A       +P  P
Sbjct: 195 GCLARKQVERSNLDPNIFIVTYTGEHTHPRPT----------HRNSLAGSTRNKSQPVNP 244

Query: 168 EPEPEPEP 175
            P+P+  P
Sbjct: 245 VPKPDTSP 252

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9STX0|WRKY7_ARATH Probable WRKY transcription factor 7 OS=Arabidopsis thaliana GN=WRKY7 PE=1 SV=1

 Score =  115 bits (289), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 70/99 (70%), Gaps = 6/99 (6%)

Query: 49  KKRRAMQKRVISVPIKEVEGSRLKGESAPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSK 108
           KKR++  KRVI VP    + + +      PSD ++WRKYGQKPIKGSP+PRGYY+CSS +
Sbjct: 257 KKRKSRVKRVIRVPAVSSKMADI------PSDEFSWRKYGQKPIKGSPHPRGYYKCSSVR 310

Query: 109 GCPARKQVERSSVDPSMLLITYSCEHNHPWPLPSTSRNH 147
           GCPARK VER+  D  ML++TY  +HNH   L +T+ NH
Sbjct: 311 GCPARKHVERALDDAMMLIVTYEGDHNHALVLETTTMNH 349

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|O22176|WRK15_ARATH Probable WRKY transcription factor 15 OS=Arabidopsis thaliana GN=WRKY15 PE=2 SV=1

 Score =  114 bits (285), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 61/138 (44%), Positives = 84/138 (60%), Gaps = 14/138 (10%)

Query: 7   SNSNPFTGEQEENDTTPENSSESPPSSSTYNDMM--KMTSTSSP------KKRRAMQKRV 58
           S + PF  + +   TT  + S+S        +++  K  S SS       KKR+  Q+R+
Sbjct: 166 SETAPFASQTQSLSTTVSSFSKSTKRKCNSENLLTGKCASASSSGRCHCSKKRKIKQRRI 225

Query: 59  ISVPIKEVEGSRLKGESAPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVER 118
           I VP    + S +      P D ++WRKYGQKPIKGSP+PRGYY+CSS +GCPARK VER
Sbjct: 226 IRVPAISAKMSDV------PPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVER 279

Query: 119 SSVDPSMLLITYSCEHNH 136
           ++ D SML++TY  +HNH
Sbjct: 280 AADDSSMLIVTYEGDHNH 297

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1

 Score =  112 bits (280), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 57/104 (54%), Positives = 69/104 (66%), Gaps = 13/104 (12%)

Query: 43   TSTSSPKKRRAMQKRVISVPIKEVEGSRLKGESAPPSDSWAWRKYGQKPIKGSPYPRGYY 102
             + S  +++   +KRV+ V  +   GSR        SD W WRKYGQKPIK SPYPR YY
Sbjct: 1154 ITRSKSRRKNNKEKRVVCVVDR---GSR-------SSDLWVWRKYGQKPIKSSPYPRSYY 1203

Query: 103  RCSSSKGCPARKQVERSSVDPSMLLITYSCEHNHPWPLPSTSRN 146
            RC+SSKGC ARKQVERS  DP++ +ITY  EHNHP+P   T RN
Sbjct: 1204 RCASSKGCFARKQVERSRTDPNVSVITYISEHNHPFP---TLRN 1244

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May also act as a disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O04336|WRK21_ARATH Probable WRKY transcription factor 21 OS=Arabidopsis thaliana GN=WRKY21 PE=2 SV=1

 Score =  110 bits (275), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 54/94 (57%), Positives = 66/94 (70%), Gaps = 7/94 (7%)

Query: 49  KKRRAMQKRVISVPIKEVEGSRLKGESAPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSK 108
           KKR+   +R I VP    + + +      P D ++WRKYGQKPIKGSPYPRGYY+CSS +
Sbjct: 289 KKRKHRVRRSIRVPAISNKVADI------PPDDYSWRKYGQKPIKGSPYPRGYYKCSSMR 342

Query: 109 GCPARKQVERSSVDPSMLLITYSCEHNHPWPLPS 142
           GCPARK VER   DP+ML++TY  EHNHP  LPS
Sbjct: 343 GCPARKHVERCLEDPAMLIVTYEAEHNHP-KLPS 375

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
224116802	268	predicted protein [Populus trichocarpa]	0.959	0.962	0.673	2e-89
255562482	267	WRKY transcription factor, putative [Ric	0.970	0.977	0.672	9e-86
259121381	268	WRKY transcription factor 8 [(Populus to	0.962	0.966	0.669	2e-84
224079049	262	predicted protein [Populus trichocarpa]	0.959	0.984	0.659	8e-84
225443744	278	PREDICTED: probable WRKY transcription f	0.921	0.892	0.621	5e-80
188509943	274	putative WRKY transcription factor [Goss	0.929	0.912	0.566	8e-80
49333385	273	putative WRKY transcription factor [Goss	0.929	0.915	0.561	7e-78
188509958	271	putative WRKY transcription factor [Goss	0.802	0.797	0.611	1e-77
49333371	272	putative WRKY transcription factor [Goss	0.925	0.915	0.557	1e-77
302399125	266	WRKY domain class transcription factor [	0.940	0.951	0.589	8e-76

>gi|224116802|ref|XP_002317397.1| predicted protein [Populus trichocarpa] gi|222860462|gb|EEE98009.1| predicted protein [Populus trichocarpa]

 Score =  334 bits (856), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 188/279 (67%), Positives = 222/279 (79%), Gaps = 21/279 (7%)

Query: 1   MDGRFNSNSNPFTGEQEENDTTPENSS-ESPPSSSTYNDMMKMTSTSSPKK-RRAMQKRV 58
           MD RFN N  P   EQEEND + + S  ESPPS    NDM KM STSSPK+ ++AMQKRV
Sbjct: 1   MDRRFNIN--PLITEQEENDNSAQESGPESPPS----NDM-KMPSTSSPKRSKKAMQKRV 53

Query: 59  ISVPIKEVEGSRLKGESA-PPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVE 117
           +SVPIK++EGSRLKGE+A PPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVE
Sbjct: 54  VSVPIKDLEGSRLKGENASPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVE 113

Query: 118 RSSVDPSMLLITYSCEHNHPWPLPSTSRNHHHHHHNSKAAKPDRDPEPEPEPEP----EP 173
           RS VDP+ML+ITYSCEHNHPWP P  SR+H+HH ++  ++ P  +   +PE        P
Sbjct: 114 RSKVDPTMLVITYSCEHNHPWPPP--SRSHNHHKNHHNSSSPKHNTTTKPEVSTTHPDNP 171

Query: 174 EPEHEEKFTDLADHDNALM--TTSADEFTWFGEMETTTSTILESPIFADRSQSDCDSLSM 231
           EPEHEEKFTDL + D +L+  TT++DEF+WFGE+ETT+STILE+P FA+  ++D D  SM
Sbjct: 172 EPEHEEKFTDLGN-DGSLISTTTTSDEFSWFGEIETTSSTILETPFFAE-GEADADMASM 229

Query: 232 FFPMREEDESLFADLGELPECSMVFRRHR-NLGPEVQIC 269
           FFPMR+EDESLFADLGELPECS VFR  R  +GP+VQIC
Sbjct: 230 FFPMRDEDESLFADLGELPECSSVFRHQRSGVGPQVQIC 268

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562482|ref|XP_002522247.1| WRKY transcription factor, putative [Ricinus communis] gi|223538500|gb|EEF40105.1| WRKY transcription factor, putative [Ricinus communis]

 Score =  322 bits (825), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 185/275 (67%), Positives = 224/275 (81%), Gaps = 14/275 (5%)

Query: 1   MDGRFNSNSNPFTGEQEENDTTPENSSESPPSSSTYNDMMKMTSTSSPKK-RRAMQKRVI 59
           MDG++N+++     +QEEND + E+  ESP SSS  NDM KM+STSSPK+ +RA QKRVI
Sbjct: 1   MDGKYNNSA--LITDQEENDNSTESGPESPHSSSLLNDM-KMSSTSSPKRSKRATQKRVI 57

Query: 60  SVPIKEVEGSRLKGESAPP-SDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVER 118
           SVPIK++EGSRLKGE+APP SDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVER
Sbjct: 58  SVPIKDIEGSRLKGENAPPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVER 117

Query: 119 SSVDPSMLLITYSCEHNHPWPLPSTSRNHHHHHH---NSKAAKPDRDPEPEPEPEPEPEP 175
           S VDPSML++TYSCEHNHPWP PS + +HHHH++   NS   KP+    P  EPE   +P
Sbjct: 118 SRVDPSMLVVTYSCEHNHPWPPPSKNHHHHHHNNTKPNSTLIKPEIS-TPRKEPENPEQP 176

Query: 176 EHEEKFTDLADHDNALMTTSADEFTWFGEMETTTSTILESPIFA-DRSQSDCDSLSMFFP 234
           E EE+FTDL   D +L++T  DEF+WFGEM+TT+STILESPIFA DRS+++    ++ +P
Sbjct: 177 EPEERFTDLG--DGSLIST--DEFSWFGEMQTTSSTILESPIFADDRSRAEEVEPAISYP 232

Query: 235 MREEDESLFADLGELPECSMVFRRHRNLGPEVQIC 269
           ++EEDESLFADLGELPECS VFR HR +GP+VQIC
Sbjct: 233 IKEEDESLFADLGELPECSSVFRHHRGVGPQVQIC 267

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|259121381|gb|ACV92010.1| WRKY transcription factor 8 [(Populus tomentosa x P. bolleana) x P. tomentosa]

 Score =  318 bits (815), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 186/278 (66%), Positives = 219/278 (78%), Gaps = 19/278 (6%)

Query: 1   MDGRFNSNSNPFTGEQEENDTTPENSS-ESPPSSSTYNDMMKMTSTSSPKK-RRAMQKRV 58
           MD RFN N  P   EQEEND + + S  ESPPS    NDM KM STSS K+ ++AMQKRV
Sbjct: 1   MDRRFNIN--PLITEQEENDNSAQESGPESPPS----NDM-KMPSTSSTKRSKKAMQKRV 53

Query: 59  ISVPIKEVEGSRLKGESA-PPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVE 117
           ++ PIK++EGSRLKGE+A PPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVE
Sbjct: 54  VTAPIKDLEGSRLKGENASPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVE 113

Query: 118 RSSVDPSMLLITYSCEHNHPWPLPSTSRNHHHHHHNSKAAKPDRDPEPE---PEPEPEPE 174
           RS VDP ML+ITYSCEHNHP P PS S NHH +HHNS + K +   +PE    +P+   E
Sbjct: 114 RSKVDPRMLVITYSCEHNHPSPPPSRSNNHHKNHHNSSSPKHNTTTKPEGSTTQPD-NTE 172

Query: 175 PEHEEKFTDLADHDNALM--TTSADEFTWFGEMETTTSTILESPIFADRSQSDCDSLSMF 232
           PE+EEKFTDL + D +L+  TT++DEF+WFGE+ETT+STILE+P FA+  ++D D  SMF
Sbjct: 173 PEYEEKFTDLGN-DGSLISTTTTSDEFSWFGEIETTSSTILETPFFAE-GEADADMASMF 230

Query: 233 FPMREEDESLFADLGELPECSMVFRRHR-NLGPEVQIC 269
           FPM +EDESLFADLGELPECS VFR  R  +GP+VQIC
Sbjct: 231 FPMGDEDESLFADLGELPECSSVFRHQRSGVGPQVQIC 268

Source: (Populus tomentosa x P. bolleana) x P. tomentosa

Species: (Populus tomentosa x P. bolleana) x P. tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224079049|ref|XP_002305730.1| predicted protein [Populus trichocarpa] gi|222848694|gb|EEE86241.1| predicted protein [Populus trichocarpa]

 Score =  316 bits (809), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 180/273 (65%), Positives = 205/273 (75%), Gaps = 15/273 (5%)

Query: 1   MDGRFNSNSNPFTGEQEENDTTPENSSESPPSSSTYNDMMKMTSTSSPKK-RRAMQKRVI 59
           MD RF  N  P   EQEEND +   + ES P SS  NDM KM STSSPK+ ++AMQKR++
Sbjct: 1   MDSRFIIN--PLICEQEENDNS---TQESGPESSPSNDM-KMASTSSPKRSKKAMQKRIV 54

Query: 60  SVPIKEVEGSRLKGESA-PPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVER 118
           SVPIK++EG RLKGE+A PPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVER
Sbjct: 55  SVPIKDLEGPRLKGENASPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVER 114

Query: 119 SSVDPSMLLITYSCEHNHPWPLPSTSRNHHHHHHNSKAAKPDRDPEPEPEPEPEPEPEHE 178
           S +DP+ML++TYSCEHNHPWP PS S     HHHNS        PE        PE E E
Sbjct: 115 SKLDPTMLVVTYSCEHNHPWPPPSRST----HHHNSSPKHNTTKPEVSATQPENPESEPE 170

Query: 179 EKFTDLADHDNALM-TTSADEFTWFGEMETTTSTILESPIFADRSQSDCDSLSMFFPMRE 237
           EKFTDL + +  +  TT++DEF+WFG METT+STILE+PIFA+      D  SMFFPMRE
Sbjct: 171 EKFTDLGNGEPLISNTTTSDEFSWFGVMETTSSTILETPIFAEAEADA-DMASMFFPMRE 229

Query: 238 EDESLFADLGELPECSMVFRRH-RNLGPEVQIC 269
           EDESLFADLGELPECS VFR H R +GP+VQ C
Sbjct: 230 EDESLFADLGELPECSSVFRHHRRGVGPQVQTC 262

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443744|ref|XP_002269267.1| PREDICTED: probable WRKY transcription factor 65 [Vitis vinifera] gi|297740534|emb|CBI30716.3| unnamed protein product [Vitis vinifera]

 Score =  303 bits (776), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 166/267 (62%), Positives = 201/267 (75%), Gaps = 19/267 (7%)

Query: 1   MDGRFNSNSNPFTGEQEENDTTPENSSESPPSSSTYNDMMKMTSTSSPKKRRAMQKRVIS 60
           MDGRFNSN  PF  EQEE + +PENS +SPPS    +  +  +++S  + RRAMQKRV+S
Sbjct: 1   MDGRFNSN--PFVSEQEEQENSPENSGDSPPSPMFNDAKISSSTSSPKRSRRAMQKRVVS 58

Query: 61  VPIKEVEGSRLKGESAPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSS 120
           VPIK+VEGSR+KG+ APPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERS 
Sbjct: 59  VPIKDVEGSRVKGDCAPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSR 118

Query: 121 VDPSMLLITYSCEHNHPWPLPSTSRNHHHHHHNSKAAKPDRDPEPEPEPEP--------- 171
           VDP+ML++TYSCEHNHPWP    SRNHH+  +    A     P   P   P         
Sbjct: 119 VDPTMLVVTYSCEHNHPWP---ASRNHHNTTNPPTTAAATPTPTSAPATPPSPKPAIFSS 175

Query: 172 EPEPEHEEKFTDLADHDNALMTTSADEFTWFGEMETTTSTILESPIFADRSQSDCDSLSM 231
           + EP+ +EKFTDL +   +L+TT  ++FTWF + E+ +ST+LESPIFA+ +  D D ++M
Sbjct: 176 QAEPDPDEKFTDLGEE--SLITT--EDFTWFSDFESPSSTMLESPIFAENNVRDAD-VAM 230

Query: 232 FFPMREEDESLFADLGELPECSMVFRR 258
           FFPMREEDESLFADLGELPECS+VFRR
Sbjct: 231 FFPMREEDESLFADLGELPECSLVFRR 257

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|188509943|gb|ACD56629.1| putative WRKY transcription factor [Gossypium raimondii]

 Score =  302 bits (774), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 158/279 (56%), Positives = 196/279 (70%), Gaps = 29/279 (10%)

Query: 5   FNSNSNPFTGEQE---ENDTTPENSSESPPSSSTYNDMMKMTSTSSPKKRRAMQKRVISV 61
           F    NPF  +QE    ++ +    +ESPP S+T             K +R+MQKRV+SV
Sbjct: 11  FRKVRNPFVTDQELEESDNVSSVTGAESPPPSTTK------------KGKRSMQKRVVSV 58

Query: 62  PIKEVEGSRLKGESAPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSSV 121
           PIK+VEGSRLKGE APPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERS V
Sbjct: 59  PIKDVEGSRLKGEGAPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRV 118

Query: 122 DPSMLLITYSCEHNHPWPLP----STSRNHHHHHHNSKAA----KPDRDPEPEP---EPE 170
           +P+ML+ITYSCEHNH WP      ++++         +A+    K     + EP   +P+
Sbjct: 119 NPTMLVITYSCEHNHAWPASRHNNTSAKQAAAAAAAGEASESPTKSSTAVKHEPSTSQPD 178

Query: 171 PEPEPEHEEKFTDLADHDNALMTTSADEFTWFGEMETTTSTILESPIFADRSQSDCDSLS 230
            EP+   E+ F  LA  +++++TT  DEF WFGEMETT+ST+LESP+F++R  S+ D  +
Sbjct: 179 TEPDSGMEDGFACLA--EDSILTT-GDEFAWFGEMETTSSTVLESPLFSERDNSEADETA 235

Query: 231 MFFPMREEDESLFADLGELPECSMVFRRHRNLGPEVQIC 269
           M FPMREEDESLFADLGELPECS VFR  RN+GP+V IC
Sbjct: 236 MIFPMREEDESLFADLGELPECSFVFRHQRNVGPQVGIC 274

Source: Gossypium raimondii

Species: Gossypium raimondii

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|49333385|gb|AAT64024.1| putative WRKY transcription factor [Gossypium hirsutum]

 Score =  296 bits (758), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 156/278 (56%), Positives = 190/278 (68%), Gaps = 28/278 (10%)

Query: 5   FNSNSNPFTGEQE---ENDTTPENSSESPPSSSTYNDMMKMTSTSSPKKRRAMQKRVISV 61
           F    NPF  +QE    ++ +    +ESPP S+T             K +R+MQKRV+SV
Sbjct: 11  FRKVRNPFVTDQELEESDNVSSVTGAESPPPSTTK------------KGKRSMQKRVVSV 58

Query: 62  PIKEVEGSRLKGESAPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSSV 121
           PIK+VEGSRLKGE APPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERS V
Sbjct: 59  PIKDVEGSRLKGEGAPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRV 118

Query: 122 DPSMLLITYSCEHNHPWPLPSTSRNHHHHHHNSKAAKPDRDP---------EPEP-EPEP 171
           +P+ML+ITYSCEHNH WP    +         + A +    P         EP   +P+ 
Sbjct: 119 NPTMLVITYSCEHNHAWPASRHNNTSAKQAAAAAAGEASESPTKSSTAVKHEPSTSQPDT 178

Query: 172 EPEPEHEEKFTDLADHDNALMTTSADEFTWFGEMETTTSTILESPIFADRSQSDCDSLSM 231
           EP+   E+ F  L   +++++TT  DEF WFGEMETT+ST+LESP+F++R  S+ D  +M
Sbjct: 179 EPDSGMEDGFACLT--EDSILTT-GDEFAWFGEMETTSSTVLESPLFSERDNSEADDTAM 235

Query: 232 FFPMREEDESLFADLGELPECSMVFRRHRNLGPEVQIC 269
            FPMREEDESLFADL ELPECS VFR  RN+GP+V IC
Sbjct: 236 IFPMREEDESLFADLEELPECSFVFRHQRNVGPQVGIC 273

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|188509958|gb|ACD56642.1| putative WRKY transcription factor [Gossypioides kirkii]

 Score =  295 bits (756), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 145/237 (61%), Positives = 180/237 (75%), Gaps = 21/237 (8%)

Query: 45  TSSPKKRRAMQKRVISVPIKEVEGSRLKGESAPPSDSWAWRKYGQKPIKGSPYPRGYYRC 104
           +++ K +R+MQKRV+SVPIK+VEGSRLKGE APPSDSWAWRKYGQKPIKGSPYPRGYYRC
Sbjct: 44  STAKKGKRSMQKRVVSVPIKDVEGSRLKGEGAPPSDSWAWRKYGQKPIKGSPYPRGYYRC 103

Query: 105 SSSKGCPARKQVERSSVDPSMLLITYSCEHNHPWPLPSTSRNHHHHHHNSKAAKPDRDPE 164
           SSSKGCPARKQVERS V+P+ML+ITYS EHNH WP         H++ ++K A  +    
Sbjct: 104 SSSKGCPARKQVERSRVNPTMLVITYSSEHNHAWPA------SRHNNTSAKQAAGEASES 157

Query: 165 P---------EP---EPEPEPEPEHEEKFTDLADHDNALMTTSADEFTWFGEMETTTSTI 212
           P         EP   +P+ EP+   E+ F  L   +++++TT  DEF WFGEMETT+ST+
Sbjct: 158 PTKSTTAVKHEPSTSQPDTEPDSGMEDGFACLT--EDSILTT-GDEFAWFGEMETTSSTV 214

Query: 213 LESPIFADRSQSDCDSLSMFFPMREEDESLFADLGELPECSMVFRRHRNLGPEVQIC 269
           LESP+F++R+ S+ D  ++ FPMREEDESLFADLGELPECS VFR  RN+GP+V IC
Sbjct: 215 LESPLFSERNNSEADDTAVIFPMREEDESLFADLGELPECSFVFRHQRNVGPQVGIC 271

Source: Gossypioides kirkii

Species: Gossypioides kirkii

Genus: Gossypioides

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|49333371|gb|AAT64011.1| putative WRKY transcription factor [Gossypium hirsutum]

 Score =  295 bits (755), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 155/278 (55%), Positives = 190/278 (68%), Gaps = 29/278 (10%)

Query: 5   FNSNSNPFTGEQE---ENDTTPENSSESPPSSSTYNDMMKMTSTSSPKKRRAMQKRVISV 61
           F    NPF  +QE    ++ +    +ESPP S+T             K +R+MQKRV+SV
Sbjct: 11  FRKVRNPFVTDQELEESDNVSSVTGAESPPPSTT------------KKGKRSMQKRVVSV 58

Query: 62  PIKEVEGSRLKGESAPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSSV 121
           PIK+VEGSRLKGE APPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERS V
Sbjct: 59  PIKDVEGSRLKGEGAPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRV 118

Query: 122 DPSMLLITYSCEHNHPWPLP---STSRNHHHHHHNSKAAKPDR-------DPEPEPEPEP 171
           +P+ML+ITYSCEHNH WP     +TS           +  P +       DP    +P+ 
Sbjct: 119 NPTMLVITYSCEHNHAWPASRHNNTSAKQAAAAAGEASESPTKSTTAVKHDPSTS-QPDT 177

Query: 172 EPEPEHEEKFTDLADHDNALMTTSADEFTWFGEMETTTSTILESPIFADRSQSDCDSLSM 231
           EP+   E+ F  L   +++++TT  DEF WFGEMETT+ST+LES +F++R  S+ D  ++
Sbjct: 178 EPDSGMEDGFACLT--EDSILTT-GDEFAWFGEMETTSSTVLESSLFSERDNSEADDTAV 234

Query: 232 FFPMREEDESLFADLGELPECSMVFRRHRNLGPEVQIC 269
             PMREEDESLFADLGELPECS VFR  RN+GP+V IC
Sbjct: 235 ISPMREEDESLFADLGELPECSFVFRHQRNVGPQVGIC 272

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302399125|gb|ADL36857.1| WRKY domain class transcription factor [Malus x domestica]

 Score =  289 bits (740), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 161/273 (58%), Positives = 198/273 (72%), Gaps = 20/273 (7%)

Query: 5   FNSNSNPFTGEQEEND----TTPENSSESPPSSSTYNDMMKMT-STSSPKK--RRAMQKR 57
           F+SNS     +QEEND    +TPENSS+SPP S+ ++D  K+T STSSPKK  RRA+QKR
Sbjct: 6   FSSNSKQIMSDQEENDNTTSSTPENSSDSPPPSTNFSDYSKITTSTSSPKKSARRAIQKR 65

Query: 58  VISVPIKEVEGSRLKGESAPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVE 117
           V+SVPIK    +     + PPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVE
Sbjct: 66  VVSVPIKNENSN-----TPPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVE 120

Query: 118 RSSVDPSMLLITYSCEHNHPWPLPSTSRNHHHHHHNSKAAKPDRDPEPEPEPEPEPEPEH 177
           RS VDP+ML+ITYS EHNHPWP      N+ +  + +   KP   P PE +   + + + 
Sbjct: 121 RSRVDPTMLVITYSAEHNHPWPASRNHNNNRNISNPAAGTKP--CPTPEAQQPDQQDQDQ 178

Query: 178 EEKFTDLADHDNALMTTSADEFTWFGEMETTTSTILESPIFADRSQSDC-DSLSMFFPMR 236
           + +F DL +H++ L+    DE+ WF +METT+ST+LESPIFA+   SD  D  +M FPM 
Sbjct: 179 DPRFADL-NHESLLVN---DEYVWFADMETTSSTVLESPIFAESGGSDSGDMAAMVFPMG 234

Query: 237 EEDESLFADLGELPECSMVFRRHRNLGPEVQIC 269
           EEDESLFADLGELPE S+VF RHR +GP+ QIC
Sbjct: 235 EEDESLFADLGELPEYSLVF-RHRGVGPQAQIC 266

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
TAIR|locus:2029919	259	WRKY65 "WRKY DNA-binding prote	0.821	0.853	0.572	1.2e-65
TAIR|locus:2204549	430	WRKY14 "WRKY DNA-binding prote	0.408	0.255	0.577	1.2e-35
TAIR|locus:2044777	427	WRKY35 "WRKY DNA-binding prote	0.743	0.468	0.386	9.5e-34
TAIR|locus:2125043	298	WRKY22 [Arabidopsis thaliana (	0.368	0.332	0.522	5.2e-26
TAIR|locus:2128389	304	WRKY29 [Arabidopsis thaliana (	0.405	0.358	0.491	8.4e-26
TAIR|locus:2176907	348	WRKY27 "WRKY DNA-binding prote	0.702	0.543	0.374	8.4e-26
TAIR|locus:2064377	380	WRKY21 "WRKY DNA-binding prote	0.323	0.228	0.595	7.6e-25
TAIR|locus:2135967	353	WRKY7 "WRKY DNA-binding protei	0.342	0.260	0.551	5.3e-24
TAIR|locus:2058568	317	WRKY15 "WRKY DNA-binding prote	0.304	0.258	0.579	6.8e-24
TAIR|locus:2155347	1372	TTR1 "TOLERANT TO TOBACCO RING	0.390	0.076	0.512	2.2e-23

TAIR|locus:2029919 WRKY65 "WRKY DNA-binding protein 65" [Arabidopsis thaliana (taxid:3702)]

 Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
 Identities = 138/241 (57%), Positives = 173/241 (71%)

Query:    36 YNDMMKMTSTSSPKK-RRAMQKRVISVPIKEVEGSRLKGESAPPSDSWAWRKYGQKPIKG 94
             +N M  + S+ SPK+ RR+++KRV++VP+KE+EGSR KG++ PPSDSWAWRKYGQKPIKG
Sbjct:    30 FNGMKALISSHSPKRSRRSVEKRVVNVPMKEMEGSRHKGDTTPPSDSWAWRKYGQKPIKG 89

Query:    95 SPYPRGYYRCSSSKGCPARKQVERSSVDPSMLLITYSCEHNHPWPLPSTSRNXXXXXXNS 154
             SPYPRGYYRCSS+KGCPARKQVERS  DP+M+LITY+ EHNHPWPL S++RN        
Sbjct:    90 SPYPRGYYRCSSTKGCPARKQVERSRDDPTMILITYTSEHNHPWPLTSSTRNGPKPKPEP 149

Query:   155 KAAKPDRDXXXXXXXXXXXXXXXXXKFTDLADHDNALMTTSA--DEFTWFGEMETTTSTI 212
             K  +P+ +                 KF  L      + TT +  DEF WF EMETT+STI
Sbjct:   150 KP-EPEPEVEPEAEEEDN-------KFMVLG---RGIETTPSCVDEFAWFTEMETTSSTI 198

Query:   213 LESPIFADRSQ---SDCDSLSMFFPMREEDESLFADLGELPECSMVFRRHRN--LGPEVQ 267
             LESPIF+   +   S  D +++FFPM EEDESLFADLGELPECS+VFR HR+  +G +V+
Sbjct:   199 LESPIFSSEKKTAVSGADDVAVFFPMGEEDESLFADLGELPECSVVFR-HRSSVVGSQVE 257

Query:   268 I 268
             I
Sbjct:   258 I 258

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015698 "inorganic anion transport" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2204549 WRKY14 "WRKY DNA-binding protein 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
 Identities = 67/116 (57%), Positives = 81/116 (69%)

Query:    49 KKRRAMQKRVISVPIKEVEGSRLKGESAPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSK 108
             K+R++  K+V+ +P      SR  GE  P SD WAWRKYGQKPIKGSP+PRGYYRCSSSK
Sbjct:   188 KRRKSQAKKVVCIPAPAAMNSRSSGEVVP-SDLWAWRKYGQKPIKGSPFPRGYYRCSSSK 246

Query:   109 GCPARKQVERSSVDPSMLLITYSCEHNHPWP-----LPSTSRNXXXXXXNSKAAKP 159
             GC ARKQVERS  DP+ML+ITY+ EHNHPWP     L  ++R+      N   +KP
Sbjct:   247 GCSARKQVERSRTDPNMLVITYTSEHNHPWPIQRNALAGSTRSSTSSSSNPNPSKP 302

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2044777 WRKY35 "WRKY DNA-binding protein 35" [Arabidopsis thaliana (taxid:3702)]

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 78/202 (38%), Positives = 100/202 (49%)

Query:    49 KKRRAMQKRVISVPIKEVEGSRLKGESAPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSK 108
             K+R++  K+V+ +P      SR  GE  P SD WAWRKYGQKPIKGSPYPRGYYRCSSSK
Sbjct:   186 KRRKSQAKKVVCIPAPAAMNSRSSGEVVP-SDLWAWRKYGQKPIKGSPYPRGYYRCSSSK 244

Query:   109 GCPARKQVERSSVDPSMLLITYSCEHNHPWPLPSTSRNXXXXXXNSKAAKPD-RDXXXXX 167
             GC ARKQVERS  DP+ML+ITY+ EHNHPWP    +        +S +  P  +      
Sbjct:   245 GCSARKQVERSRTDPNMLVITYTSEHNHPWPTQRNALAGSTRSSSSSSLNPSSKSSTAAA 304

Query:   168 XXXXXXXXXXXXKFTDLADHDNALMTTSADEFTWFGEMETTTSTILESPIFADRSQSDCD 227
                            D  ++ N   +++   F      E       E   F      +  
Sbjct:   305 TTSPSSRVFQNNSSKDEPNNSNLPSSSTHPPFDAAAIKEENVEERQEKMEFDYNDVENTY 364

Query:   228 SLSMFFPMREEDESLFADLGEL 249
                +    + + E  FADL EL
Sbjct:   365 RPELLQEFQHQPEDFFADLDEL 386

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0009555 "pollen development" evidence=IMP

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2125043 WRKY22 [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 59/113 (52%), Positives = 71/113 (62%)

Query:    43 TSTSSPKKRRAMQKRVISVPIKEVEGSRLKGESAPPSDSWAWRKYGQKPIKGSPYPRGYY 102
             ++TS  K+R+   K+V  V  + +            SD WAWRKYGQKPIKGSPYPRGYY
Sbjct:   103 SNTSRSKRRKIQHKKVCHVAAEALN-----------SDVWAWRKYGQKPIKGSPYPRGYY 151

Query:   103 RCSSSKGCPARKQVERSSVDPSMLLITYSCEHNHPWPLPSTSRNXXXXXXNSK 155
             RCS+SKGC ARKQVER+  DP M ++TY+ EHNHP P   T RN        K
Sbjct:   152 RCSTSKGCLARKQVERNRSDPKMFIVTYTAEHNHPAP---THRNSLAGSTRQK 201

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0010150 "leaf senescence" evidence=IMP

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2128389 WRKY29 [Arabidopsis thaliana (taxid:3702)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 60/122 (49%), Positives = 78/122 (63%)

Query:    38 DMMKMTSTSSPKKRRAMQKRVISVPIKEVEGSRLKGESAPPSDSWAWRKYGQKPIKGSPY 97
             D ++++ + S K ++  QKRV+    ++V+   L       SD+WAWRKYGQKPIKGSPY
Sbjct:   103 DHIRISESKSKKSKKNQQKRVV----EQVKEENLL------SDAWAWRKYGQKPIKGSPY 152

Query:    98 PRGYYRCSSSKGCPARKQVERSSVDPSMLLITYSCEHNHPWPLPSTSRNXXXXXXNSKAA 157
             PR YYRCSSSKGC ARKQVER+  +P    ITY+ EHNH  P   T RN       +K +
Sbjct:   153 PRSYYRCSSSKGCLARKQVERNPQNPEKFTITYTNEHNHELP---TRRNSLAGSTRAKTS 209

Query:   158 KP 159
             +P
Sbjct:   210 QP 211

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP

TAIR|locus:2176907 WRKY27 "WRKY DNA-binding protein 27" [Arabidopsis thaliana (taxid:3702)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 79/211 (37%), Positives = 101/211 (47%)

Query:    49 KKRRAMQKRVISVPIKEVEGSRLKGESAPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSK 108
             +KR+  QKR I      V    L       SD WAWRKYGQKPIKGSPYPR YYRCSSSK
Sbjct:   145 RKRKNQQKRTIC----HVTQENLS------SDLWAWRKYGQKPIKGSPYPRNYYRCSSSK 194

Query:   109 GCPARKQVERSSVDPSMLLITYSCEHNHPWPLPSTSRNXXXXXXNSKA--AKPDRDXXXX 166
             GC ARKQVERS++DP++ ++TY+ EH HP P   T RN       +K+    P       
Sbjct:   195 GCLARKQVERSNLDPNIFIVTYTGEHTHPRP---THRNSLAGSTRNKSQPVNPVPKPDTS 251

Query:   167 XXXXXXXXXXXXXKFTDLADHDNALMTTSADEFTWFGEMETTTSTILESPIFADRSQSDC 226
                            T L  +D+ +  T+ DE     E+        E     D  + D 
Sbjct:   252 PLSDTVKEEIHLSPTTPLKGNDD-VQETNGDEDMVGQEVNMEEEEEEEEVEEDDEEEEDD 310

Query:   227 DSLS-MFFP---MREEDESLFADLGELPECS 253
             D +  +  P   +R+ D+  FA  G  P  S
Sbjct:   311 DDVDDLLIPNLAVRDRDDLFFA--GSFPSWS 339

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0007263 "nitric oxide mediated signal transduction" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2064377 WRKY21 "WRKY DNA-binding protein 21" [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 56/94 (59%), Positives = 66/94 (70%)

Query:    49 KKRRAMQKRVISVPIKEVEGSRLKGESAPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSK 108
             KKR+   +R I VP   +     K    PP D ++WRKYGQKPIKGSPYPRGYY+CSS +
Sbjct:   289 KKRKHRVRRSIRVPA--ISN---KVADIPPDD-YSWRKYGQKPIKGSPYPRGYYKCSSMR 342

Query:   109 GCPARKQVERSSVDPSMLLITYSCEHNHPWPLPS 142
             GCPARK VER   DP+ML++TY  EHNHP  LPS
Sbjct:   343 GCPARKHVERCLEDPAMLIVTYEAEHNHP-KLPS 375

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IDA

TAIR|locus:2135967 WRKY7 "WRKY DNA-binding protein 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 54/98 (55%), Positives = 70/98 (71%)

Query:    49 KKRRAMQKRVISVPIKEVEGSRLKGESAPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSK 108
             KKR++  KRVI VP      S++   +  PSD ++WRKYGQKPIKGSP+PRGYY+CSS +
Sbjct:   257 KKRKSRVKRVIRVP---AVSSKM---ADIPSDEFSWRKYGQKPIKGSPHPRGYYKCSSVR 310

Query:   109 GCPARKQVERSSVDPSMLLITYSCEHNHPWPLPSTSRN 146
             GCPARK VER+  D  ML++TY  +HNH   L +T+ N
Sbjct:   311 GCPARKHVERALDDAMMLIVTYEGDHNHALVLETTTMN 348

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IDA;IPI

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2058568 WRKY15 "WRKY DNA-binding protein 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 51/88 (57%), Positives = 65/88 (73%)

Query:    49 KKRRAMQKRVISVPIKEVEGSRLKGESAPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSK 108
             KKR+  Q+R+I VP    + S       PP D ++WRKYGQKPIKGSP+PRGYY+CSS +
Sbjct:   216 KKRKIKQRRIIRVPAISAKMS-----DVPPDD-YSWRKYGQKPIKGSPHPRGYYKCSSVR 269

Query:   109 GCPARKQVERSSVDPSMLLITYSCEHNH 136
             GCPARK VER++ D SML++TY  +HNH
Sbjct:   270 GCPARKHVERAADDSSMLIVTYEGDHNH 297

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IDA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2155347 TTR1 "TOLERANT TO TOBACCO RINGSPOT NEPOVIRUS 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 2.2e-23, P = 2.2e-23
 Identities = 61/119 (51%), Positives = 76/119 (63%)

Query:    40 MKMTSTSSPKKRRAMQKRVISVPIKEVEGSRLKGESAPPSDSWAWRKYGQKPIKGSPYPR 99
             +++T + S +K    +KRV+ V  +   GSR        SD W WRKYGQKPIK SPYPR
Sbjct:  1152 IEITRSKSRRKNNK-EKRVVCVVDR---GSR-------SSDLWVWRKYGQKPIKSSPYPR 1200

Query:   100 GYYRCSSSKGCPARKQVERSSVDPSMLLITYSCEHNHPWPLPSTSRNXXXXXXNSKAAK 158
              YYRC+SSKGC ARKQVERS  DP++ +ITY  EHNHP+P   T RN       S ++K
Sbjct:  1201 SYYRCASSKGCFARKQVERSRTDPNVSVITYISEHNHPFP---TLRNTLAGSTRSSSSK 1256

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006952 "defense response" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009615 "response to virus" evidence=IMP

GO:0009626 "plant-type hypersensitive response" evidence=IMP

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LP56	WRK65_ARATH	No assigned EC number	0.5755	0.8438	0.8764	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	269
smart00774	59	smart00774, WRKY, DNA binding domain	8e-35
pfam03106	60	pfam03106, WRKY, WRKY DNA -binding domain	9e-33
PRK14960	702	PRK14960, PRK14960, DNA polymerase III subunits ga	0.003

>gnl|CDD|214815 smart00774, WRKY, DNA binding domain

 Score =  119 bits (300), Expect = 8e-35
 Identities = 37/59 (62%), Positives = 46/59 (77%)

Query: 78  PSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSSVDPSMLLITYSCEHNH 136
             D + WRKYGQK IKGSPYPR YYRC+ ++GCPA+KQV+RS  DPS++ +TY  EH H
Sbjct: 1   LDDGYQWRKYGQKVIKGSPYPRSYYRCTYTQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding. Length = 59

>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain

 Score =  113 bits (286), Expect = 9e-33
 Identities = 40/61 (65%), Positives = 47/61 (77%), Gaps = 1/61 (1%)

Query: 78  PSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSSVDPSMLLITYSCEHNHP 137
             D + WRKYGQKP+KGSP+PR YYRC+S  GCP +KQVERSS DP ++ ITY  EHNHP
Sbjct: 1   LDDGYNWRKYGQKPVKGSPFPRSYYRCTSP-GCPVKKQVERSSDDPQIVEITYEGEHNHP 59

Query: 138 W 138
            
Sbjct: 60  K 60

Length = 60

>gnl|CDD|237868 PRK14960, PRK14960, DNA polymerase III subunits gamma and tau; Provisional

 Score = 38.5 bits (89), Expect = 0.003
 Identities = 16/23 (69%), Positives = 20/23 (86%)

Query: 158 KPDRDPEPEPEPEPEPEPEHEEK 180
           +P+ +PEPEPEPEPEPEPE E +
Sbjct: 421 EPEPEPEPEPEPEPEPEPEPEPQ 443

Length = 702

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	269
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	99.97
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	99.96
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	91.49
PF03101	91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	81.51

>smart00774 WRKY DNA binding domain

Probab=99.97  E-value=2.9e-31  Score=195.77  Aligned_cols=59  Identities=63%  Similarity=1.204  Sum_probs=57.0

Q ss_pred             CCCCchhhhcCCccCCCCCCCCCccccCCCCCCccccceeeccCCCCeEEEEecccCCC
Q 024332           78 PSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSSVDPSMLLITYSCEHNH  136 (269)
Q Consensus        78 ~~DGy~WRKYGQK~Ikgs~~pRsYYRCs~~~gC~AkKqVqrs~~Dp~~~~vtY~G~H~H  136 (269)
                      ++|||+|||||||.|+|+++||+||||++.+||+|+|+|||+++|+.+++|||+|+|||
T Consensus         1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774        1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             CCCcccccccCcEecCCCcCcceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            47999999999999999999999999998689999999999999999999999999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=99.96  E-value=1.1e-31  Score=197.92  Aligned_cols=60  Identities=63%  Similarity=1.260  Sum_probs=52.2

Q ss_pred             CCCCchhhhcCCccCCCCCCCCCccccCCCCCCccccceeeccCCCCeEEEEecccCCCCC
Q 024332           78 PSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSSVDPSMLLITYSCEHNHPW  138 (269)
Q Consensus        78 ~~DGy~WRKYGQK~Ikgs~~pRsYYRCs~~~gC~AkKqVqrs~~Dp~~~~vtY~G~H~H~~  138 (269)
                      ++|||+|||||||.|+|+++||+||||++ .+|+|+|+|||+.+|+.+++|||+|+|||+.
T Consensus         1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~-~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~k   60 (60)
T PF03106_consen    1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTH-PGCPAKKQVQRSADDPNIVIVTYEGEHNHPK   60 (60)
T ss_dssp             --SSS-EEEEEEEEETTTTCEEEEEEEEC-TTEEEEEEEEEETTCCCEEEEEEES--SS--
T ss_pred             CCCCCchhhccCcccCCCceeeEeeeccc-cChhheeeEEEecCCCCEEEEEEeeeeCCCC
Confidence            47999999999999999999999999998 6999999999999999999999999999973

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=91.49  E-value=0.076  Score=36.91  Aligned_cols=50  Identities=26%  Similarity=0.484  Sum_probs=25.1

Q ss_pred             CCCCCchhhhcCCccCCCCCCCCCccccCCC--CCCccccceeeccCCCCeEEEEecccCCC
Q 024332           77 PPSDSWAWRKYGQKPIKGSPYPRGYYRCSSS--KGCPARKQVERSSVDPSMLLITYSCEHNH  136 (269)
Q Consensus        77 p~~DGy~WRKYGQK~Ikgs~~pRsYYRCs~~--~gC~AkKqVqrs~~Dp~~~~vtY~G~H~H  136 (269)
                      +.-|||.-+++...      ....|+||+..  .+|+|+=.+.  . +...+ +...++|||
T Consensus        11 L~~~Gy~y~~~~~~------~~~~~WrC~~~~~~~C~a~~~~~--~-~~~~~-~~~~~~HnH   62 (62)
T PF04500_consen   11 LVYDGYRYYFNKRN------DGKTYWRCSRRRSHGCRARLITD--A-GDGRV-VRTNGEHNH   62 (62)
T ss_dssp             EEETTEEEEEEEE-------SS-EEEEEGGGTTS----EEEEE-----TTEE-EE-S---SS
T ss_pred             EEECCeEEECcCCC------CCcEEEEeCCCCCCCCeEEEEEE--C-CCCEE-EECCCccCC
Confidence            44588877765555      34589999972  3799988777  2 33333 444499998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants

Probab=81.51  E-value=1.4  Score=33.21  Aligned_cols=30  Identities=40%  Similarity=0.712  Sum_probs=26.6

Q ss_pred             CCCccccceeeccCCCCeEEEEecccCCCCC
Q 024332          108 KGCPARKQVERSSVDPSMLLITYSCEHNHPW  138 (269)
Q Consensus       108 ~gC~AkKqVqrs~~Dp~~~~vtY~G~H~H~~  138 (269)
                      -||+|+=.|-+.. ++...++.+..+|||+.
T Consensus        60 tgC~a~i~v~~~~-~~~w~v~~~~~~HNH~L   89 (91)
T PF03101_consen   60 TGCKARINVKRRK-DGKWRVTSFVLEHNHPL   89 (91)
T ss_pred             cCCCEEEEEEEcc-CCEEEEEECcCCcCCCC
Confidence            5899999998877 88888899999999975

It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	269
2ayd_A	76	Crystal Structure Of The C-Terminal Wrky Domainof A		5e-16
1wj2_A	78	Solution Structure Of The C-Terminal Wrky Domain Of		2e-14

>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1, An Sa-Induced And Partially Npr1-Dependent Transcription Factor Length = 76

Iteration: 1
 Score = 81.3 bits (199), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 37/61 (60%), Positives = 45/61 (73%), Gaps = 1/61 (1%)
Query: 79  SDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSSVDPSMLLITYSCEHNHPW 138
           +D + WRKYGQK +KGSPYPR YYRCSS  GCP +K VERSS D  +L+ TY  +H+H  
Sbjct: 15  NDGYRWRKYGQKSVKGSPYPRSYYRCSSP-GCPVKKHVERSSHDTKLLITTYEGKHDHDM 73
Query: 139 P 139
           P
Sbjct: 74  P 74

>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of Atwrky4 Length = 78

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/60 (53%), Positives = 43/60 (71%), Gaps = 1/60 (1%)
Query: 80  DSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSSVDPSMLLITYSCEHNHPWP 139
           D + WRKYGQK +KG+PYPR YY+C++  GC  RK VER++ DP  ++ TY  +HNH  P
Sbjct: 19  DGYRWRKYGQKVVKGNPYPRSYYKCTTP-GCGVRKHVERAATDPKAVVTTYEGKHNHDLP 77
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	269
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	3e-33
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	2e-32

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78

 Score =  115 bits (289), Expect = 3e-33
 Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 68  GSRLKGESAPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSSVDPSMLL 127
           G +   E     D + WRKYGQK +KG+PYPR YY+C++  GC  RK VER++ DP  ++
Sbjct: 7   GVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTP-GCGVRKHVERAATDPKAVV 65

Query: 128 ITYSCEHNHPWP 139
            TY  +HNH  P
Sbjct: 66  TTYEGKHNHDLP 77

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76

 Score =  113 bits (284), Expect = 2e-32
 Identities = 37/70 (52%), Positives = 46/70 (65%), Gaps = 1/70 (1%)

Query: 70  RLKGESAPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSSVDPSMLLIT 129
             +      +D + WRKYGQK +KGSPYPR YYRCSS  GCP +K VERSS D  +L+ T
Sbjct: 6   HTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSP-GCPVKKHVERSSHDTKLLITT 64

Query: 130 YSCEHNHPWP 139
           Y  +H+H  P
Sbjct: 65  YEGKHDHDMP 74

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	269
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	99.97
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	99.97

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=99.97  E-value=3.1e-33  Score=214.31  Aligned_cols=67  Identities=55%  Similarity=1.034  Sum_probs=63.6

Q ss_pred             CCCCCCCCCchhhhcCCccCCCCCCCCCccccCCCCCCccccceeeccCCCCeEEEEecccCCCCCCC
Q 024332           73 GESAPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSSVDPSMLLITYSCEHNHPWPL  140 (269)
Q Consensus        73 ~~~~p~~DGy~WRKYGQK~Ikgs~~pRsYYRCs~~~gC~AkKqVqrs~~Dp~~~~vtY~G~H~H~~P~  140 (269)
                      .+..+++|||+|||||||.|||++|||+||||++ +||+|+|+|||+.+||++++|||+|+|||+.|.
T Consensus         9 ~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~-~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   75 (76)
T 2ayd_A            9 TLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSS-PGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP   75 (76)
T ss_dssp             CSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECS-TTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred             CCCCcCCCCchhhhCcccccCCCCCceeEeEcCC-CCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence            3566899999999999999999999999999997 899999999999999999999999999999875

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=99.97  E-value=3.7e-33  Score=214.79  Aligned_cols=68  Identities=49%  Similarity=1.013  Sum_probs=64.3

Q ss_pred             CCCCCCCCCCchhhhcCCccCCCCCCCCCccccCCCCCCccccceeeccCCCCeEEEEecccCCCCCCC
Q 024332           72 KGESAPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSSVDPSMLLITYSCEHNHPWPL  140 (269)
Q Consensus        72 k~~~~p~~DGy~WRKYGQK~Ikgs~~pRsYYRCs~~~gC~AkKqVqrs~~Dp~~~~vtY~G~H~H~~P~  140 (269)
                      .++.++++|||+|||||||.|||++|||+||||++ +||+|+|+|||+.+|+++++|||+|+|||+.|.
T Consensus        11 ~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~-~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   78 (78)
T 1wj2_A           11 TSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   78 (78)
T ss_dssp             CCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEEC-SSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             cCCCCcCCCCchhhhCcccccCCCcCeeEEeecCc-CCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence            45667999999999999999999999999999998 899999999999999999999999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	269
d1wj2a_	71	g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr	1e-26

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 96.8 bits (241), Expect = 1e-26
 Identities = 33/70 (47%), Positives = 45/70 (64%), Gaps = 1/70 (1%)

Query: 70  RLKGESAPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSSVDPSMLLIT 129
           +   E     D + WRKYGQK +KG+PYPR YY+C++  GC  RK VER++ DP  ++ T
Sbjct: 2   QTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PGCGVRKHVERAATDPKAVVTT 60

Query: 130 YSCEHNHPWP 139
           Y  +HNH  P
Sbjct: 61  YEGKHNHDLP 70

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	269
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	99.98

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.98  E-value=4.6e-34  Score=214.61  Aligned_cols=68  Identities=49%  Similarity=1.013  Sum_probs=64.0

Q ss_pred             CCCCCCCCCCchhhhcCCccCCCCCCCCCccccCCCCCCccccceeeccCCCCeEEEEecccCCCCCCC
Q 024332           72 KGESAPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSSVDPSMLLITYSCEHNHPWPL  140 (269)
Q Consensus        72 k~~~~p~~DGy~WRKYGQK~Ikgs~~pRsYYRCs~~~gC~AkKqVqrs~~Dp~~~~vtY~G~H~H~~P~  140 (269)
                      ..+..+++|||+|||||||.|+|+++||+||||++ +||+|+|+|||+++||.+++|||+|+|||+.|.
T Consensus         4 ~~~~~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~-~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~Ps   71 (71)
T d1wj2a_           4 TSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   71 (71)
T ss_dssp             CCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEEC-SSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             ccccccCCCCcEecccCceeccCCCCceEEEEccc-cCCCCcceEEEEcCCCCEEEEEEeeEeCCCCCC
Confidence            45667899999999999999999999999999997 899999999999999999999999999999873