Citrus Sinensis ID: 024344

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
Protein Sequence
MDQGSYNFAEIWQFPVPGSGSMSESGGGLGQKGAHFGQHLSQFGTNREVSGDDPVNLEHKMAHGNGVRKRRDVEDESAKHVSTSSGNGNGNRVNDSDGKRIKTSGSRDDNHHSKAEAEPSSVKPAEQNSQPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRMNPGIEVFPPKDFTQQTFDTAGMPFVSQATREYSRGTSPDWLHMQIGGGFERMT
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHccccccHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHcccccccccccccccccccccccccHHHHcccccccccccc
Coil and Loop (DISEMBL)
mdqgsynfaeiwqfpvpgsgsmsesggglgqkgahfgqhlsqfgtnrevsgddpvnlehkmahgngvrkrrdvedesakhvstssgngngnrvndsdgkriktsgsrddnhhskaeaepssvkpaeqnsqppeppkqdyihvrarrgqatdshSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNtrmnpgievfppkdftqqtfdtagmpfvsqatreysrgtspdwlhmqigggfermt
Flexible Loop (DISEMBL)
MDQGSYNFAEIWQFPVPGSGSMSESGGGLGQKGAHFGQHLSQFGTNREVSGDDPVNLEHkmahgngvrkrrdvedesakhvstssgngngnrvndsdgkriktsgsrddnhhskaeaepssvkpaeqnsqppepPKQDYIHVRArrgqatdshslaeRARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRMNPGIEVFPPKDFTQQTFDTAGMPFVSQATreysrgtspdwlhmqigggfermt
Low Complexity Region (SEG)
MDQGSYNFAEIWQFPVPgsgsmsesggglgQKGAHFGQHLSQFGTNREVSGDDPVNLEHKMAHGNGVRKRRDVEDESAKHVSTSSGNGNGNRVNDSDGKRIKTSGSRDDNHHSKAEAEPSSVKPAEQNSQPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRMNPGIEVFPPKDFTQQTFDTAGMPFVSQATREYSRGTSPDWLHMQIGGGFERMT
Disordered region (IsUnstruct)
******NFAEIWQF*********************************************************************************************************************************************************MKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRMNPGIEVFPPKDFTQQTFDTAGMPFV**************WLH***********
Disordered Region (DISOPRED)
*****YN*********************************************************************************************************************************************************REKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLE****************************************************G******
Disordered Region (DISEMBL)
MDQGSYNFAEIWQFPVPG************QKGAHFGQHLSQFGTNREVSGDDPVNLEHKMA*****************************RVNDSDGKRI*********************************PKQDYIHVR*****************REKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRMNPGIEVFPPKDFTQQTFDTAGMPFVSQATREYSRGTSPDWLHMQIGGGFERMT
Disordered Region (DISPRO)
****SYNFAEIWQ*PVPG*********************************************************************************************************************KQDYIHVRARRGQ****HSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRMNPGIEVFPPKDFTQQTFDTAGMPFV*QAT*******S****************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDQGSYNFAEIWQFPVPGSGSMSESGGGLGQKGAHFGQHLSQFGTNREVSGDDPVNLEHKMAHGNGVRKRRDVEDESAKHVSTSSGNGNGNRVNDSDGKRIKTSGSRDDNHHSKAEAEPSSVKPAEQNSQPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYxxxxxxxxxxxxxxxxxxxxxMNPGIEVFPPKDFTQQTFDTAGMPFVSQATREYSRGTSPDWLHMQIGGGFERMT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	269	2.2.26 [Sep-21-2011]
Q0JXE7	343	Transcription factor BPE	no	no	0.847	0.664	0.535	9e-59
Q9LV17	281	Transcription factor bHLH	no	no	0.947	0.907	0.474	3e-51
Q9SRT2	456	Transcription factor bHLH	no	no	0.821	0.484	0.442	2e-40
Q9FJL4	498	Transcription factor bHLH	no	no	0.368	0.198	0.782	3e-40
Q9LK48	371	Transcription factor bHLH	no	no	0.676	0.490	0.497	3e-39
Q9CAA9	486	Transcription factor bHLH	no	no	0.739	0.409	0.451	2e-38
Q6NKN9	366	Transcription factor bHLH	no	no	0.390	0.286	0.676	3e-36
Q9C670	390	Transcription factor bHLH	no	no	0.654	0.451	0.463	1e-35
Q8GY61	335	Transcription factor bHLH	no	no	0.747	0.6	0.429	2e-34
Q9ZPW3	337	Transcription factor bHLH	no	no	0.483	0.385	0.571	3e-34

>sp|Q0JXE7|BPE_ARATH Transcription factor BPE OS=Arabidopsis thaliana GN=BPE PE=2 SV=1

 Score =  227 bits (578), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 143/267 (53%), Positives = 164/267 (61%), Gaps = 39/267 (14%)

Query: 4   GSYNFAEIWQFPVPGSGSMSESGGGLGQKGAHFGQHLSQFGTN--REVSGDDPVNLEHKM 61
           G +N AEIWQFP+ G      S  G   + +  G +  QFG       +  DP  + H +
Sbjct: 11  GPFNLAEIWQFPLNGV-----STAGDSSRRSFVGPN--QFGDADLTTAANGDPARMSHAL 63

Query: 62  AHG-----NGVRKRRDVEDESAKHVSTSSGNGNGNRVNDSDGKRIKTSGSRDDNHHSKAE 116
           +       +G  KRR+ E +SAK VST   +       + + KR K     D+    KAE
Sbjct: 64  SQAVIEGISGAWKRREDESKSAKIVSTIGAS-------EGENKRQKI----DEVCDGKAE 112

Query: 117 AEPSSVKPAEQNSQPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVP 176
           AE    +  EQ  Q  EP K DYIHVRARRGQATDSHSLAERARREKISERMKILQDLVP
Sbjct: 113 AESLGTE-TEQKKQQMEPTK-DYIHVRARRGQATDSHSLAERARREKISERMKILQDLVP 170

Query: 177 GCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRMNPGIEVFPPKDFTQ------ 230
           GCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVN+RMNPGIEVFPPK+         
Sbjct: 171 GCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNPGIEVFPPKEVMILMIINS 230

Query: 231 --QTFDTAGMPFVSQATREYSRGTSPD 255
               F T    F+S+    YSRG S D
Sbjct: 231 IFSIFFTKQYMFLSR----YSRGRSLD 253

Involved in the control of petal size, by interfering with postmitotic cell expansion to limit final petal cell size.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LV17|BH079_ARATH Transcription factor bHLH79 OS=Arabidopsis thaliana GN=BHLH79 PE=2 SV=1

 Score =  202 bits (513), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 130/274 (47%), Positives = 157/274 (57%), Gaps = 19/274 (6%)

Query: 5   SYNFAEIWQFPVPGSGSMSESGGGLG-QKGAHFGQHLSQFGTNREVSGDDPVNLEHKMAH 63
           SY  +EIW FPV        SG  L    G  F +  S+   N++VS  +   +   +  
Sbjct: 18  SYTLSEIWPFPV---NDAVRSGLRLAVNSGRVFTR--SEHSGNKDVSAAEESTVTD-LTA 71

Query: 64  GNGVRKRRDVEDESAKHVSTSSGNGNGNRVNDSDGKRIKTSGSRDDNHHSKAEAEPSSV- 122
           G G RK RD+  E        S + +GN + +S  K+ K  GS   N       E  +  
Sbjct: 72  GWGSRKTRDLNSED-DSSKMVSSSSSGNELKESGDKKRKLCGSESGNGDGSMRPEGETSS 130

Query: 123 -----KPAEQNSQPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPG 177
                K  EQ ++P EPPK DYIHVRARRGQATD HSLAERARREKISE+M  LQD++PG
Sbjct: 131 GGGGSKATEQKNKP-EPPK-DYIHVRARRGQATDRHSLAERARREKISEKMTALQDIIPG 188

Query: 178 CNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNT--RMNPGIEVFPPKDFTQQTFDT 235
           CNK+IGKALVLDEIINYIQSLQRQVEFLSMKLE VN+     P I VFP  D      D 
Sbjct: 189 CNKIIGKALVLDEIINYIQSLQRQVEFLSMKLEVVNSGASTGPTIGVFPSGDLGTLPIDV 248

Query: 236 AGMPFVSQATREYSRGTSPDWLHMQIGGGFERMT 269
               +  Q   E +R + P+WLHMQ+ G F R T
Sbjct: 249 HRTIYEQQEANE-TRVSQPEWLHMQVDGNFNRTT 281

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SRT2|BH062_ARATH Transcription factor bHLH62 OS=Arabidopsis thaliana GN=BHLH62 PE=2 SV=1

 Score =  166 bits (419), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 107/242 (44%), Positives = 137/242 (56%), Gaps = 21/242 (8%)

Query: 4   GSYNFAEIWQFPVPGS-------GSMSESGG--GLGQKGAHFGQHLSQFGT---NREVSG 51
           G+  +A     P PGS         M+E  G  G  ++ A F    S FG+   N   + 
Sbjct: 107 GNSCYATPMSSPPPGSMMETKTTTPMAELSGDPGFAERAARF----SCFGSRSFNSRTNS 162

Query: 52  DDPVNLEHKMAHGNGVRKRRD--VEDESAKHVSTSSGNGNGNRVNDSDGKRIKTSG-SRD 108
             P+N E  +     + +     V    A HV     +G  +R   +  K+   S  S  
Sbjct: 163 PFPINNEPPITTNEKMPRVSSSPVFKPLASHVPAGESSGELSRKRKTKSKQNSPSAVSSS 222

Query: 109 DNHHSKAEAEPSSVKPAEQNSQPPEP--PKQDYIHVRARRGQATDSHSLAERARREKISE 166
                K +++P   K +E+N    +   P +DYIHVRARRGQATDSHSLAER RREKISE
Sbjct: 223 KEIEEKEDSDPKRCKKSEENGDKTKSIDPYKDYIHVRARRGQATDSHSLAERVRREKISE 282

Query: 167 RMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRMNPGIEVFPPK 226
           RMK+LQDLVPGCNKV GKAL+LDEIINY+QSLQRQVEFLSMKL +VNTR++  ++    K
Sbjct: 283 RMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLSSVNTRLDFNMDALLSK 342

Query: 227 DF 228
           D 
Sbjct: 343 DI 344

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJL4|BH078_ARATH Transcription factor bHLH78 OS=Arabidopsis thaliana GN=BHLH78 PE=2 SV=1

 Score =  165 bits (417), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 79/101 (78%), Positives = 89/101 (88%), Gaps = 2/101 (1%)

Query: 128 NSQPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALV 187
           N++PPEPPK DYIHVRARRGQATDSHSLAER RREKI ERMK+LQDLVPGCNKV GKAL+
Sbjct: 288 NTKPPEPPK-DYIHVRARRGQATDSHSLAERVRREKIGERMKLLQDLVPGCNKVTGKALM 346

Query: 188 LDEIINYIQSLQRQVEFLSMKLEAVN-TRMNPGIEVFPPKD 227
           LDEIINY+QSLQRQVEFLSMKL +VN TR++  ++    KD
Sbjct: 347 LDEIINYVQSLQRQVEFLSMKLSSVNDTRLDFNVDALVSKD 387

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LK48|BH077_ARATH Transcription factor bHLH77 OS=Arabidopsis thaliana GN=BHLH77 PE=2 SV=1

 Score =  162 bits (410), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 100/201 (49%), Positives = 121/201 (60%), Gaps = 19/201 (9%)

Query: 33  GAHFGQHLSQFGTNREVSGDDPVNLEHK---MAHGNGVRKR-RDVEDESAKHVSTSSGNG 88
           G  F  +  QFG++RE  G  P   E     +   + V  R    +  S K  S  SGNG
Sbjct: 67  GIRFPPYPGQFGSDREF-GSQPTTQESNKSSLLDPDSVSDRVHTTKSNSRKRKSIPSGNG 125

Query: 89  N----GNRVNDSDGKRIKTSGSRDDNHHSKAEAEPSSVKPAEQ---------NSQPPEPP 135
                 + +  S+ K    +G       SK +   SS    E+         +++PPE P
Sbjct: 126 KESPASSSLTASNSKVSGENGGSKGGKRSKQDVAGSSKNGVEKCDSKGDNKDDAKPPEAP 185

Query: 136 KQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYI 195
           K DYIHVRARRGQATDSHSLAERARREKISERM +LQDLVPGCN++ GKA++LDEIINY+
Sbjct: 186 K-DYIHVRARRGQATDSHSLAERARREKISERMTLLQDLVPGCNRITGKAVMLDEIINYV 244

Query: 196 QSLQRQVEFLSMKLEAVNTRM 216
           QSLQRQVEFLSMKL  VN RM
Sbjct: 245 QSLQRQVEFLSMKLATVNPRM 265

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAA9|BH049_ARATH Transcription factor bHLH49 OS=Arabidopsis thaliana GN=BHLH49 PE=2 SV=1

 Score =  159 bits (403), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 107/237 (45%), Positives = 130/237 (54%), Gaps = 38/237 (16%)

Query: 16  VPGSGSMSE---SGGGLGQKGAHFGQHLSQFGTNREVSGDDPVNLEHKMAHGNGVRKRRD 72
           VPGSG++SE   S GG GQKG             RE S              N  +++R+
Sbjct: 208 VPGSGNVSEDTQSSGGNGQKG-------------RETSS-------------NTKKRKRN 241

Query: 73  VEDESAKHVSTSSGNGNGNRVNDSDGKRIKTSGSRDDNHHSKAEAEPSSVKPAEQNSQPP 132
            +  S    S  S        N+ D KR        ++  S       S    +Q  Q  
Sbjct: 242 GQKNSEAAQSHRSQQSEEEPDNNGDEKR--------NDEQSPNSPGKKSNSGKQQGKQSS 293

Query: 133 EPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEII 192
           +PPK  YIHVRARRGQAT+SHSLAER RREKISERMK LQDLVPGCNKV GKA++LDEII
Sbjct: 294 DPPKDGYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEII 353

Query: 193 NYIQSLQRQVEFLSMKLEAVNTRMNPGIEVFPPKDFTQ-QTFDTAGMPFVSQATREY 248
           NY+QSLQRQVEFLSMKL  VN +M+  +E    KD  Q +   ++  PF    +  Y
Sbjct: 354 NYVQSLQRQVEFLSMKLATVNPQMDFNLEGLLAKDALQLRAGSSSTTPFPPNMSMAY 410

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NKN9|BH074_ARATH Transcription factor bHLH74 OS=Arabidopsis thaliana GN=BHLH74 PE=2 SV=1

 Score =  152 bits (383), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 71/105 (67%), Positives = 88/105 (83%)

Query: 126 EQNSQPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKA 185
           +++SQ  E PK++YIH+RARRGQAT+SHSLAER RREKISERM++LQ+LVPGCNK+ GKA
Sbjct: 190 KESSQSEEAPKENYIHMRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKA 249

Query: 186 LVLDEIINYIQSLQRQVEFLSMKLEAVNTRMNPGIEVFPPKDFTQ 230
           ++LDEIINY+QSLQ+QVEFLSMKL  VN  +N  I+    KD  Q
Sbjct: 250 VMLDEIINYVQSLQQQVEFLSMKLATVNPEINIDIDRILAKDLLQ 294

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C670|BH076_ARATH Transcription factor bHLH76 OS=Arabidopsis thaliana GN=BHLH76 PE=2 SV=1

 Score =  150 bits (378), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 88/190 (46%), Positives = 113/190 (59%), Gaps = 14/190 (7%)

Query: 60  KMAHGNGVRKRRDVEDESAKHVSTSSGNGNGNRVNDSDG-------------KRIKTSGS 106
           K+ +G      + V++ S  +VS  S +  GN  +D+               KRI     
Sbjct: 127 KLDNGPLTDASKLVKERSINNVSEDSQSSGGNGHDDAKCGQTSSKGFSSKKRKRIGKDCE 186

Query: 107 RDDNHHSKAEAEPSS-VKPAEQNSQPPEPPKQDYIHVRARRGQATDSHSLAERARREKIS 165
            +++   K E  P+S         QP +  K  YIH+RARRGQAT+SHSLAER RREKIS
Sbjct: 187 EEEDKKQKDEQSPTSNANKTNSEKQPSDSLKDGYIHMRARRGQATNSHSLAERVRREKIS 246

Query: 166 ERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRMNPGIEVFPP 225
           ERMK LQDLVPGC+KV GKA++LDEIINY+QSLQ Q+EFLSMKL AVN  ++  +E    
Sbjct: 247 ERMKFLQDLVPGCDKVTGKAVMLDEIINYVQSLQCQIEFLSMKLSAVNPVLDFNLESLLA 306

Query: 226 KDFTQQTFDT 235
           KD  Q +  T
Sbjct: 307 KDALQSSAPT 316

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GY61|BH063_ARATH Transcription factor bHLH63 OS=Arabidopsis thaliana GN=BHLH63 PE=2 SV=1

 Score =  146 bits (368), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 92/214 (42%), Positives = 123/214 (57%), Gaps = 13/214 (6%)

Query: 14  FPVPGSGSMSES----GGGLGQKGAHFGQHLSQFGTNREVSGDDPVNLEHKMAHGNGVRK 69
           F  P +G  ++S    GG +    +  G +L        V GD  +++  +   G G  K
Sbjct: 33  FDSPLAGFFADSSMITGGEMDSYLSTAGLNLPMMYGETTVEGDSRLSISPETTLGTGNFK 92

Query: 70  RRDVEDESAKHVSTSSGNGNGNRVN-DSDGKRIKTSGSRDDNHHSKAEAEPSSVKPAEQN 128
           +R  + E+ K  +        NR +   +G+  K+  +  +N  +K+  +       E+N
Sbjct: 93  KRKFDTET-KDCNEKKKKMTMNRDDLVEEGEEEKSKITEQNNGSTKSIKKMKHKAKKEEN 151

Query: 129 S-------QPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKV 181
           +          E  K DYIHVRARRGQATDSHS+AER RREKISERMK LQDLVPGC+K+
Sbjct: 152 NFSNDSSKVTKELEKTDYIHVRARRGQATDSHSIAERVRREKISERMKFLQDLVPGCDKI 211

Query: 182 IGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTR 215
            GKA +LDEIINY+QSLQRQ+EFLSMKL  VN R
Sbjct: 212 TGKAGMLDEIINYVQSLQRQIEFLSMKLAIVNPR 245

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZPW3|BH064_ARATH Transcription factor bHLH64 OS=Arabidopsis thaliana GN=BHLH64 PE=2 SV=3

 Score =  145 bits (366), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 76/133 (57%), Positives = 89/133 (66%), Gaps = 3/133 (2%)

Query: 99  KRIKTSGSRDDNHHSKAE---AEPSSVKPAEQNSQPPEPPKQDYIHVRARRGQATDSHSL 155
           K+IK     + +   K+     E SS    E +    E  K DYIHVRARRGQATD HSL
Sbjct: 139 KKIKVEAETESSMKGKSNMGNTEASSDTSKETSKGASENQKLDYIHVRARRGQATDRHSL 198

Query: 156 AERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTR 215
           AERARREKIS++MK LQD+VPGCNKV GKA +LDEIINY+Q LQRQVEFLSMKL  +N  
Sbjct: 199 AERARREKISKKMKYLQDIVPGCNKVTGKAGMLDEIINYVQCLQRQVEFLSMKLAVLNPE 258

Query: 216 MNPGIEVFPPKDF 228
           +   +E    K F
Sbjct: 259 LELAVEDVSVKQF 271

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
255558300	265	DNA binding protein, putative [Ricinus c	0.955	0.969	0.723	6e-99
449458041	298	PREDICTED: transcription factor BPE-like	0.977	0.882	0.687	9e-96
225424835	277	PREDICTED: transcription factor BPE-like	0.962	0.935	0.683	2e-95
147774847	302	hypothetical protein VITISV_004761 [Viti	0.936	0.834	0.682	2e-91
356498105	264	PREDICTED: transcription factor BPE-like	0.903	0.920	0.647	7e-86
296086467	208	unnamed protein product [Vitis vinifera]	0.743	0.961	0.780	1e-85
357516593	278	Transcription factor bHLH79 [Medicago tr	0.947	0.917	0.676	3e-84
225456604	284	PREDICTED: transcription factor bHLH79 i	0.962	0.911	0.648	4e-84
388504966	278	unknown [Medicago truncatula]	0.947	0.917	0.672	2e-83
356500809	255	PREDICTED: transcription factor BPE-like	0.884	0.933	0.634	1e-82

>gi|255558300|ref|XP_002520177.1| DNA binding protein, putative [Ricinus communis] gi|223540669|gb|EEF42232.1| DNA binding protein, putative [Ricinus communis]

 Score =  366 bits (939), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 196/271 (72%), Positives = 217/271 (80%), Gaps = 14/271 (5%)

Query: 1   MDQGSYNFAEIWQFPVPGSGSMSESGGGLGQKGAHFGQHLSQFGTNREVSGDDPVNLEHK 60
           M+ GSYN AEIW FPV        +G G GQ G + G       +NR+VSG+D + L+ +
Sbjct: 7   MNDGSYNLAEIWPFPV--------NGNGRGQFGQNLGAQF--LDSNRDVSGNDLMILDRR 56

Query: 61  MAHGNGVRKRRD--VEDESAKHVSTSSGNGNGNRVNDSDGKRIKTSGSRDDNHHSKAEAE 118
            A G G  KRR   VED+S K VS+S  NGNGN VNDSD KR+KTSG+ D+NH SK+EAE
Sbjct: 57  GARGGGGAKRRHDVVEDDSTKVVSSS--NGNGNAVNDSDAKRLKTSGNLDENHDSKSEAE 114

Query: 119 PSSVKPAEQNSQPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGC 178
           PSS K  EQN+QPPE PKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGC
Sbjct: 115 PSSGKHVEQNTQPPELPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGC 174

Query: 179 NKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRMNPGIEVFPPKDFTQQTFDTAGM 238
           NKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRM PGIE FP KDF QQTFD AGM
Sbjct: 175 NKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRMTPGIEAFPSKDFGQQTFDAAGM 234

Query: 239 PFVSQATREYSRGTSPDWLHMQIGGGFERMT 269
            F SQATR+Y+RGTSP+WLHMQ+GGGFER +
Sbjct: 235 AFGSQATRDYNRGTSPEWLHMQVGGGFERTS 265

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458041|ref|XP_004146756.1| PREDICTED: transcription factor BPE-like [Cucumis sativus]

 Score =  355 bits (912), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 189/275 (68%), Positives = 215/275 (78%), Gaps = 12/275 (4%)

Query: 6   YNFAEIWQFPVPGSGSMSESGGGLGQKGAHFGQHLSQFGT----NREVSGDD--PVNLEH 59
           +N +EIW FP+ G  S+ +SG  L  + AH   +L+ FG     N EVS  D  P+ L+ 
Sbjct: 25  FNLSEIWHFPIHGGTSVEDSGPALALRMAHLAHNLTHFGDIAIGNPEVSPTDSLPLQLQQ 84

Query: 60  KMAHGNGV-RKRRDVEDESAKHVSTSSGNGNGNRVN---DSDGKRIKTSGSRDDNHHSKA 115
           ++ HG+GV +KRRD + +S K  STS+GN      +   DS GKR+KT+  RDDNH SK 
Sbjct: 85  RLPHGHGVSKKRRDSDQDSPKVSSTSNGNNANANSSAGNDSGGKRVKTAACRDDNHESKT 144

Query: 116 EAEPSSVKPAEQNSQP-PEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDL 174
           EAEP S K  EQNSQP PE PKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDL
Sbjct: 145 EAEPRSGK-TEQNSQPTPEQPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDL 203

Query: 175 VPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRMNPGIEVFPPKDFTQQTFD 234
           VPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVN+R+ PGIEVFPPKD+ QQTFD
Sbjct: 204 VPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRIGPGIEVFPPKDYGQQTFD 263

Query: 235 TAGMPFVSQATREYSRGTSPDWLHMQIGGGFERMT 269
           T G+ F SQATREYSRG+SP+WLHMQIGGGFER T
Sbjct: 264 TTGVAFGSQATREYSRGSSPEWLHMQIGGGFERTT 298

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424835|ref|XP_002272776.1| PREDICTED: transcription factor BPE-like [Vitis vinifera]

 Score =  354 bits (909), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 190/278 (68%), Positives = 210/278 (75%), Gaps = 19/278 (6%)

Query: 1   MDQG-SYNFAEIWQFPVPGSGSMSES------GGGLGQKGAHFGQHLSQFGTNREVSG-- 51
           ++QG SY+ AEIW +P+ G G+          GG LGQ   HFG +    G NRE SG  
Sbjct: 7   INQGASYHLAEIWNYPISGGGAGEAGGGLELRGGHLGQNLGHFGDNAGVGGANREASGGG 66

Query: 52  DDPVNLEHKMAHGNGVRKRRD--VEDESAKHVSTSSGNGNGNRVNDSDGKRIKTSGSRDD 109
           DDP+ LE      +G RKRRD   EDE  K VSTS G   GN  ND DGKR+KTSGSRD+
Sbjct: 67  DDPMVLER-----SGGRKRRDAATEDEGGKAVSTSGG---GNVANDCDGKRLKTSGSRDE 118

Query: 110 NHHSKAEAEPSSVKPAEQNSQPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMK 169
           N  SK E E SS KP EQN Q  +PPKQD+IHVRARRGQATDSHSLAERARREKISERMK
Sbjct: 119 NRDSKTEVETSSGKPVEQNPQSADPPKQDFIHVRARRGQATDSHSLAERARREKISERMK 178

Query: 170 ILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRMNPGIEVFPPKDFT 229
           ILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVN+RMN GIE FP KDF 
Sbjct: 179 ILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNSGIEGFPSKDFG 238

Query: 230 QQTFDTAGMPFVSQATREYSRGTSPDWLHMQIGGGFER 267
           QQTFD AG+ + SQATREY R +SP+WLHMQ+GGGF+R
Sbjct: 239 QQTFDAAGVAYSSQATREYGRASSPEWLHMQVGGGFDR 276

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147774847|emb|CAN69076.1| hypothetical protein VITISV_004761 [Vitis vinifera]

 Score =  341 bits (875), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 185/271 (68%), Positives = 203/271 (74%), Gaps = 19/271 (7%)

Query: 1   MDQG-SYNFAEIWQFPVPGSGSMSES------GGGLGQKGAHFGQHLSQFGTNREVSG-- 51
           ++QG SY+ AEIW +P+ G G+          GG LGQ   HFG +    G NRE SG  
Sbjct: 7   INQGASYHLAEIWNYPISGGGAGEAGGGLELRGGHLGQNLGHFGDNAGVGGANREASGGG 66

Query: 52  DDPVNLEHKMAHGNGVRKRRD--VEDESAKHVSTSSGNGNGNRVNDSDGKRIKTSGSRDD 109
           DDP+ LE      +G RKRRD   EDE  K VSTS G   GN  ND DGKR+KTSGSRD+
Sbjct: 67  DDPMVLER-----SGGRKRRDAATEDEGGKAVSTSGG---GNVANDCDGKRLKTSGSRDE 118

Query: 110 NHHSKAEAEPSSVKPAEQNSQPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMK 169
           N  SK E E SS KP EQN Q  +PPKQD+IHVRARRGQATDSHSLAERARREKISERMK
Sbjct: 119 NRDSKTEVETSSGKPVEQNPQSADPPKQDFIHVRARRGQATDSHSLAERARREKISERMK 178

Query: 170 ILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRMNPGIEVFPPKDFT 229
           ILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVN+RMN GIE FP KDF 
Sbjct: 179 ILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNSGIEGFPSKDFG 238

Query: 230 QQTFDTAGMPFVSQATREYSRGTSPDWLHMQ 260
           QQTFD AG+ + SQATREY R +SP+WLHMQ
Sbjct: 239 QQTFDAAGVAYSSQATREYGRASSPEWLHMQ 269

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498105|ref|XP_003517894.1| PREDICTED: transcription factor BPE-like [Glycine max]

 Score =  323 bits (827), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 176/272 (64%), Positives = 196/272 (72%), Gaps = 29/272 (10%)

Query: 5   SYNFAEIWQFPVPGSGSMSESGGGLGQKGAHFGQHLSQFG---TNREVSGDDPVNLEHKM 61
           SY+ +EIWQFP P +         LG +  HF    + F    T   V G DP ++  K 
Sbjct: 15  SYHLSEIWQFPPPNAPDE------LGLRRPHFTHGFADFAPDPTRDAVPGRDPASIAQK- 67

Query: 62  AHGNGVRKRRDV---EDESAKHVSTSSGNGNGNRVNDSDGKRIKTSGSRDDNHHSKAEAE 118
                  KRRD    E+ESAK  ST++    G  V D  GKR+KTS S       K E E
Sbjct: 68  -------KRRDASAEEEESAKGASTTNAVNEGGGVGD--GKRVKTSES------GKGEGE 112

Query: 119 PSSVKPAEQNSQPP-EPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPG 177
            SS K AEQ+ +PP EPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQD+VPG
Sbjct: 113 TSSGKLAEQSGKPPSEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDIVPG 172

Query: 178 CNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRMNPGIEVFPPKDFTQQTFDTAG 237
           CNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVN+R+ P IEVFPPKDF QQTFDT G
Sbjct: 173 CNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLAPRIEVFPPKDFDQQTFDTTG 232

Query: 238 MPFVSQATREYSRGTSPDWLHMQIGGGFERMT 269
           MPF SQATREYSRG+SP+WLHMQ+GGG+ER T
Sbjct: 233 MPFASQATREYSRGSSPEWLHMQVGGGYERAT 264

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086467|emb|CBI32056.3| unnamed protein product [Vitis vinifera]

 Score =  322 bits (824), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 160/205 (78%), Positives = 172/205 (83%), Gaps = 5/205 (2%)

Query: 65  NGVRKRRD--VEDESAKHVSTSSGNGNGNRVNDSDGKRIKTSGSRDDNHHSKAEAEPSSV 122
           +G RKRRD   EDE  K VSTS   G GN  ND DGKR+KTSGSRD+N  SK E E SS 
Sbjct: 6   SGGRKRRDAATEDEGGKAVSTS---GGGNVANDCDGKRLKTSGSRDENRDSKTEVETSSG 62

Query: 123 KPAEQNSQPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVI 182
           KP EQN Q  +PPKQD+IHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVI
Sbjct: 63  KPVEQNPQSADPPKQDFIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVI 122

Query: 183 GKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRMNPGIEVFPPKDFTQQTFDTAGMPFVS 242
           GKALVLDEIINYIQSLQRQVEFLSMKLEAVN+RMN GIE FP KDF QQTFD AG+ + S
Sbjct: 123 GKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNSGIEGFPSKDFGQQTFDAAGVAYSS 182

Query: 243 QATREYSRGTSPDWLHMQIGGGFER 267
           QATREY R +SP+WLHMQ+GGGF+R
Sbjct: 183 QATREYGRASSPEWLHMQVGGGFDR 207

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357516593|ref|XP_003628585.1| Transcription factor bHLH79 [Medicago truncatula] gi|355522607|gb|AET03061.1| Transcription factor bHLH79 [Medicago truncatula]

 Score =  317 bits (813), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 180/266 (67%), Positives = 201/266 (75%), Gaps = 11/266 (4%)

Query: 6   YNFAEIWQFPVPGSGSMSESGGGLGQKGAHFGQHLSQFGTNREVSGDDPVNLEHKMAHGN 65
           ++ AEIWQFP     +++  GGGLG +   FG  L Q+G        D   L H    G 
Sbjct: 22  FSLAEIWQFPA----AINGGGGGLGLRRPQFGNGLGQYGEFGPGLNRDGNGLNHA---GG 74

Query: 66  GVRKRRDVEDESAKHVSTSSGNGNGNRVNDSDGKRIKTSGSRDDNHHSKAEAEPSSVKPA 125
           G +KRRD ED+SAK VSTS  NG  N VNDSDGKR K SG++++    K E E SS K A
Sbjct: 75  GGKKRRDSEDDSAKCVSTS--NGGANAVNDSDGKRTKASGNKNEGGDGKVEGEASSGKHA 132

Query: 126 EQNSQPPEPPKQD--YIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIG 183
           EQ+S+PP        YIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIG
Sbjct: 133 EQSSKPPPSDPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIG 192

Query: 184 KALVLDEIINYIQSLQRQVEFLSMKLEAVNTRMNPGIEVFPPKDFTQQTFDTAGMPFVSQ 243
           KALVLDEIINYIQSLQRQVEFLSMKLEAVN+R+N GIE FPPKD+ QQTFD AGMPFVSQ
Sbjct: 193 KALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLNTGIEAFPPKDYGQQTFDLAGMPFVSQ 252

Query: 244 ATREYSRGTSPDWLHMQIGGGFERMT 269
           ATRE SRG+SP+WLHMQ+GGGFER T
Sbjct: 253 ATREPSRGSSPEWLHMQVGGGFERTT 278

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456604|ref|XP_002267633.1| PREDICTED: transcription factor bHLH79 isoform 1 [Vitis vinifera]

 Score =  317 bits (811), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 177/273 (64%), Positives = 206/273 (75%), Gaps = 14/273 (5%)

Query: 5   SYNFAEIWQFPVPGSGSMSESGGGLGQKGAHFGQHLSQFG---TNREVSGDDPVNLEHKM 61
           +Y+ AEIW FPV  + ++ E   GLG + A+FGQ + QF     NR+VS D+    E   
Sbjct: 18  AYSLAEIWPFPVNSASAIGEPTAGLGLRIANFGQIMGQFADSSANRDVSVDESTVTEQSG 77

Query: 62  AHGNGVRKRRDV--EDESAKHVSTSSGNGNGNRVNDSDGKRIKTSGSRDDNHHSKAEAEP 119
           + G   RKRRDV  EDES+K VSTSSG+G    +N S+GKR+K S + D+N  SKAE E 
Sbjct: 78  SRGG-GRKRRDVSSEDESSKIVSTSSGSG----MNASNGKRMKISRTPDENGGSKAELEA 132

Query: 120 SSV---KPAEQNSQPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVP 176
           SSV   KPAE+ S+P E  KQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVP
Sbjct: 133 SSVAGEKPAEE-SKPAEQSKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVP 191

Query: 177 GCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRMNPGIEVFPPKDFTQQTFDTA 236
           GCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVN+RMN  +E FP KD   QTFD A
Sbjct: 192 GCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNHTVEGFPLKDLGVQTFDAA 251

Query: 237 GMPFVSQATREYSRGTSPDWLHMQIGGGFERMT 269
            M + SQATREY++G+ P+WLHMQ+GG  ER +
Sbjct: 252 AMIYGSQATREYAQGSQPEWLHMQVGGSIERAS 284

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388504966|gb|AFK40549.1| unknown [Medicago truncatula]

 Score =  314 bits (805), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 179/266 (67%), Positives = 199/266 (74%), Gaps = 11/266 (4%)

Query: 6   YNFAEIWQFPVPGSGSMSESGGGLGQKGAHFGQHLSQFGTNREVSGDDPVNLEHKMAHGN 65
           ++ AEIWQFP     +++  GGGLG +   FG  L Q+G        D   L H    G 
Sbjct: 22  FSLAEIWQFPA----AINGGGGGLGLRRPQFGNGLGQYGEFGPGLNRDGNGLNHA---GG 74

Query: 66  GVRKRRDVEDESAKHVSTSSGNGNGNRVNDSDGKRIKTSGSRDDNHHSKAEAEPSSVKPA 125
           G +KRRD ED+SAK VSTS  NG  N VNDSDGKR K SG++++    K E E SS K A
Sbjct: 75  GGKKRRDSEDDSAKCVSTS--NGGANAVNDSDGKRTKASGNKNEGGDGKVEGEASSGKHA 132

Query: 126 EQNSQPPEPPKQD--YIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIG 183
           EQ+S+PP        YIHVRARRGQATDSH LAERARREKISERMKILQDLVPGCNKVIG
Sbjct: 133 EQSSKPPPSDPPKQDYIHVRARRGQATDSHGLAERARREKISERMKILQDLVPGCNKVIG 192

Query: 184 KALVLDEIINYIQSLQRQVEFLSMKLEAVNTRMNPGIEVFPPKDFTQQTFDTAGMPFVSQ 243
           KALVLDEIINYIQSLQRQVEFLSMKLEAVN+R+N GIE FPPKD+ QQTFD AGMPFVSQ
Sbjct: 193 KALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLNTGIEAFPPKDYGQQTFDLAGMPFVSQ 252

Query: 244 ATREYSRGTSPDWLHMQIGGGFERMT 269
           ATRE SRG SP+WLHMQ+GGGFER T
Sbjct: 253 ATREPSRGFSPEWLHMQVGGGFERTT 278

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500809|ref|XP_003519223.1| PREDICTED: transcription factor BPE-like [Glycine max]

 Score =  312 bits (799), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 170/268 (63%), Positives = 191/268 (71%), Gaps = 30/268 (11%)

Query: 5   SYNFAEIWQFPVPGSGSMSESGGGLGQKGAHFGQHLSQFGTNREVSGDDPVNLEHKMAHG 64
           SY+ +EIW FP P +         LG + AHF        T   V G D  ++  K    
Sbjct: 15  SYHLSEIWHFPPPNAPD------ALGLRRAHFAPG----PTRHAVPGRDLASIAPK---- 60

Query: 65  NGVRKRRDVEDESAKHVSTSSGNGNGNRVNDS--DGKRIKTSGSRDDNHHSKAEAEPSSV 122
               KRR  E+E    V ++ G    N V++   DGKR+KTS S       K E E  S 
Sbjct: 61  ----KRRQAEEE---EVESTRGASTTNAVDEGCGDGKRVKTSES------GKGEGESCSG 107

Query: 123 KPAEQNSQPP-EPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKV 181
           KPA+Q+ +PP EPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKV
Sbjct: 108 KPAKQSGKPPSEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKV 167

Query: 182 IGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRMNPGIEVFPPKDFTQQTFDTAGMPFV 241
           IGKALVLDEIINYIQSLQRQVEFLSMKLEAVN+R+ PGIEVFPPKDF QQTFDT GMPF 
Sbjct: 168 IGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRIAPGIEVFPPKDFDQQTFDTTGMPFA 227

Query: 242 SQATREYSRGTSPDWLHMQIGGGFERMT 269
           SQATR+YSRG+SP+WLHMQ+G GFER T
Sbjct: 228 SQATRDYSRGSSPEWLHMQVGDGFERAT 255

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
UNIPROTKB|Q84T08	265	OSJNBa0087C10.10 "BHLH transcr	0.765	0.777	0.668	1e-68
UNIPROTKB|Q69WS3	268	OJ1118_E12.15 "Putative bHLH p	0.765	0.768	0.591	1.5e-58
TAIR|locus:2172209	281	AT5G62610 "AT5G62610" [Arabido	0.944	0.903	0.498	1.1e-53
TAIR|locus:2202867	343	BPEp "AT1G59640" [Arabidopsis	0.765	0.600	0.563	2.7e-52
UNIPROTKB|Q84QW1	405	OJ1191_A10.109 "BHLH transcrip	0.747	0.496	0.484	8.7e-40
TAIR|locus:2152551	498	AT5G48560 "AT5G48560" [Arabido	0.605	0.327	0.537	1.4e-39
TAIR|locus:2079676	456	AT3G07340 "AT3G07340" [Arabido	0.698	0.412	0.482	6.1e-39
TAIR|locus:2095198	371	AT3G23690 "AT3G23690" [Arabido	0.676	0.490	0.502	2.1e-38
UNIPROTKB|Q5N802	481	P0004D12.24 "BHLH transcriptio	0.635	0.355	0.502	8.9e-38
TAIR|locus:2205420	486	AT1G68920 [Arabidopsis thalian	0.739	0.409	0.450	1.5e-37

UNIPROTKB|Q84T08 OSJNBa0087C10.10 "BHLH transcription factor, putative, expressed" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 697 (250.4 bits), Expect = 1.0e-68, P = 1.0e-68
 Identities = 143/214 (66%), Positives = 166/214 (77%)

Query:    64 GNGVRKRRD---VEDESAKHVSTSSGNGNGNRVNDSDGKRIKTSGSRDDNHHSKAEAEPS 120
             G G R++R+   +ED+S++ VSTS G G G  + DS+ KR K S S  DN   + EAE  
Sbjct:    52 GAGRRRQREAPALEDDSSRIVSTSGGGGGGQDLTDSEAKRFKASKSSGDNSSLRTEAETD 111

Query:   121 S---VKPAEQNSQPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPG 177
             S    K  +QN  PPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPG
Sbjct:   112 SRNASKSGDQNPPPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPG 171

Query:   178 CNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRMNPGIEVFPPKDFTQQTFDTA- 236
             CNKVIGKA VLDEIINYIQ+LQRQVEFLSMKLEAVN  +N GIE FPPKDF  Q ++TA 
Sbjct:   172 CNKVIGKASVLDEIINYIQALQRQVEFLSMKLEAVNAHVNNGIEAFPPKDFGAQVYNTAP 231

Query:   237 GMPFVSQATREYSRGTSP-DWLHMQIGGGFERMT 269
             G+ F  Q  REY++G++P +WLHMQIGG +ER+T
Sbjct:   232 GLTFDPQTPREYAQGSTPSEWLHMQIGGTYERVT 265

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|Q69WS3 OJ1118_E12.15 "Putative bHLH protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
 Identities = 136/230 (59%), Positives = 164/230 (71%)

Query:    64 GNGVRK-RRDV---EDESAKHVSTSS---GNGNGNRVNDS-DGKRIKTSGSRDDNHHSKA 115
             G+G R+ R D    +D+ +K VSTS+   G G G + +D+ + KR+K   S D N   + 
Sbjct:    39 GSGRRRPRSDAGPEDDDLSKVVSTSAASGGGGGGGQDSDAPEAKRLKPMKSSDKNDSLRT 98

Query:   116 EA---EPSSVKPAEQNSQPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQ 172
             EA     +S K A++N+ PPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQ
Sbjct:    99 EAGTDSGNSSKAADKNATPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQ 158

Query:   173 DLVPGCNKVIGKALVLDEIINYIQSLQRQVEF------------LSMKLEAVNTRMNPGI 220
             DLVPGCNKVIGKA VLDEIINYIQSLQ QVEF            LSMKLEAVN+ M  GI
Sbjct:   159 DLVPGCNKVIGKASVLDEIINYIQSLQHQVEFMFKYLIELFLQFLSMKLEAVNSHMINGI 218

Query:   221 EVFPPKDFTQQTFDTA-GMPFVSQATREYSRGTSPDWLHMQIGGGFERMT 269
               FP KDF  Q ++TA G+ F  Q TRE+++G++ +WLHMQIG  +ER+T
Sbjct:   219 VAFPSKDFGAQPYNTAAGLTFDPQTTREFAQGSTSEWLHMQIGNAYERVT 268

GO:0005634 "nucleus" evidence=IC

TAIR|locus:2172209 AT5G62610 "AT5G62610" [Arabidopsis thaliana (taxid:3702)]

 Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
 Identities = 137/275 (49%), Positives = 166/275 (60%)

Query:     5 SYNFAEIWQFPVPXXXXXXXXXXXXXQKGAHFGQHLSQFGTNREVSGDDPVNLEHKMAHG 64
             SY  +EIW FPV                G  F +  S+   N++VS  +   +    A G
Sbjct:    18 SYTLSEIWPFPV--NDAVRSGLRLAVNSGRVFTR--SEHSGNKDVSAAEESTVTDLTA-G 72

Query:    65 NGVRKRRDV--EDESAKHVSTSSGNGNGNRVNDSDGKRIKTSGSRDDNHHS--KAEAEPS 120
              G RK RD+  ED+S+K VS+SS   +GN + +S  K+ K  GS   N     + E E S
Sbjct:    73 WGSRKTRDLNSEDDSSKMVSSSS---SGNELKESGDKKRKLCGSESGNGDGSMRPEGETS 129

Query:   121 S----VKPAEQNSQPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVP 176
             S     K  EQ ++P EPPK DYIHVRARRGQATD HSLAERARREKISE+M  LQD++P
Sbjct:   130 SGGGGSKATEQKNKP-EPPK-DYIHVRARRGQATDRHSLAERARREKISEKMTALQDIIP 187

Query:   177 GCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRMNPG--IEVFPPKDFTQQTFD 234
             GCNK+IGKALVLDEIINYIQSLQRQVEFLSMKLE VN+  + G  I VFP  D      D
Sbjct:   188 GCNKIIGKALVLDEIINYIQSLQRQVEFLSMKLEVVNSGASTGPTIGVFPSGDLGTLPID 247

Query:   235 TAGMPFVSQATREYSRGTSPDWLHMQIGGGFERMT 269
                  +  Q   E +R + P+WLHMQ+ G F R T
Sbjct:   248 VHRTIYEQQEANE-TRVSQPEWLHMQVDGNFNRTT 281

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2202867 BPEp "AT1G59640" [Arabidopsis thaliana (taxid:3702)]

 Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
 Identities = 129/229 (56%), Positives = 146/229 (63%)

Query:     4 GSYNFAEIWQFPVPXXXXXXXXXXXXXQKGAHFGQHLSQFGTNREVSGDDPVNLEHKMAH 63
             G +N AEIWQFP+                   FG   +   T    +  DP  + H ++ 
Sbjct:    11 GPFNLAEIWQFPLNGVSTAGDSSRRSFVGPNQFGD--ADLTT---AANGDPARMSHALSQ 65

Query:    64 G-----NGVRKRRDVEDESAKHVSTSSGNGNGNRVNDSDGKRIKTSGSRDDNHHSKAEAE 118
                   +G  KRR+ E +SAK VST   +       + + KR K     D+    KAEAE
Sbjct:    66 AVIEGISGAWKRREDESKSAKIVSTIGAS-------EGENKRQKI----DEVCDGKAEAE 114

Query:   119 PSSVKPAEQNSQPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGC 178
                 +  EQ  Q  EP K DYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGC
Sbjct:   115 SLGTE-TEQKKQQMEPTK-DYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGC 172

Query:   179 NKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRMNPGIEVFPPKD 227
             NKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVN+RMNPGIEVFPPK+
Sbjct:   173 NKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNPGIEVFPPKE 221

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0048446 "petal morphogenesis" evidence=IMP

GO:0009062 "fatty acid catabolic process" evidence=RCA

GO:0009694 "jasmonic acid metabolic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0048441 "petal development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

UNIPROTKB|Q84QW1 OJ1191_A10.109 "BHLH transcription factor(GBOF-1)-like" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 108/223 (48%), Positives = 135/223 (60%)

Query:    44 GTNREVSG-DDPVNLEHKMAHGNGVRKRRDVEDESAKHVSTSSGNGNGNRVND---SDGK 99
             G +RE S   DP +   K A  N  +KR+     +A   + + G G    V +   SDGK
Sbjct:    96 GGSREASSVSDPASSAMKDAAANA-KKRKS----TAAAAAAAKGKGKEPPVGEEKESDGK 150

Query:   100 RIKT-SGSRDDNHHSKAE--AEPSSVKPAE---------QNSQPPEPPKQDYIHVRARRG 147
             R KT +G ++ +   KAE     SSV+            +N++P EPPK DY+HVRARRG
Sbjct:   151 RCKTGNGEKESSVKPKAEQAGSDSSVEDGGGGGQKQGKGKNAKPVEPPK-DYVHVRARRG 209

Query:   148 QATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSM 207
             QATDSHSLAER RRE+IS+RMK+LQDLVPGCNKVIGKAL+LDEIINY+QSLQRQVEFLSM
Sbjct:   210 QATDSHSLAERVRRERISQRMKVLQDLVPGCNKVIGKALMLDEIINYVQSLQRQVEFLSM 269

Query:   208 KLEAVNTRMNPGIEVFPPKDFTQQTFDTAGMPFVSQATREYSR 250
             KL  VN      +     KD  Q    +A   F  +++    R
Sbjct:   270 KLATVNPLDFSNLPTLLQKDMFQACGPSASSVFSLESSNSAFR 312

GO:0005634 "nucleus" evidence=IC

TAIR|locus:2152551 AT5G48560 "AT5G48560" [Arabidopsis thaliana (taxid:3702)]

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 93/173 (53%), Positives = 118/173 (68%)

Query:    64 GNGVRKRRDVEDESAKH--VSTSSGNGNGNRVNDSDGKRIKTSGSRDDNHHSKAEAEPSS 121
             G   RKR+ V    +K   +ST+S + + ++  + +G +  +  S +     + E E   
Sbjct:   216 GEFSRKRKSVPKGKSKENPISTASPSPSFSKTAEKNGGKGGSKSSEEKGGKRRREEEDDE 275

Query:   122 VKPAE------QNSQPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLV 175
              +  E       N++PPEPPK DYIHVRARRGQATDSHSLAER RREKI ERMK+LQDLV
Sbjct:   276 EEEGEGEGNKSNNTKPPEPPK-DYIHVRARRGQATDSHSLAERVRREKIGERMKLLQDLV 334

Query:   176 PGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVN-TRMNPGIEVFPPKD 227
             PGCNKV GKAL+LDEIINY+QSLQRQVEFLSMKL +VN TR++  ++    KD
Sbjct:   335 PGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLSSVNDTRLDFNVDALVSKD 387

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2079676 AT3G07340 "AT3G07340" [Arabidopsis thaliana (taxid:3702)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 95/197 (48%), Positives = 119/197 (60%)

Query:    36 FGQHLSQFGTNRE--VSGDDPVNLEHKMAHGNGVRKRRDVEDESAKHVSTSSGNGNGNRV 93
             FG       TN    ++ + P+    KM   +       V    A HV     +G  +R 
Sbjct:   151 FGSRSFNSRTNSPFPINNEPPITTNEKMPRVSS----SPVFKPLASHVPAGESSGELSRK 206

Query:    94 NDSDGKRIKTSG-SRDDNHHSKAEAEPSSVKPAEQNSQPPEP--PKQDYIHVRARRGQAT 150
               +  K+   S  S       K +++P   K +E+N    +   P +DYIHVRARRGQAT
Sbjct:   207 RKTKSKQNSPSAVSSSKEIEEKEDSDPKRCKKSEENGDKTKSIDPYKDYIHVRARRGQAT 266

Query:   151 DSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLE 210
             DSHSLAER RREKISERMK+LQDLVPGCNKV GKAL+LDEIINY+QSLQRQVEFLSMKL 
Sbjct:   267 DSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLS 326

Query:   211 AVNTRMNPGIEVFPPKD 227
             +VNTR++  ++    KD
Sbjct:   327 SVNTRLDFNMDALLSKD 343

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2095198 AT3G23690 "AT3G23690" [Arabidopsis thaliana (taxid:3702)]

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 101/201 (50%), Positives = 121/201 (60%)

Query:    33 GAHFGQHLSQFGTNREVSGDDPVNLEHK---MAHGNGVRKR-RDVEDESAKHVSTSSGNG 88
             G  F  +  QFG++RE  G  P   E     +   + V  R    +  S K  S  SGNG
Sbjct:    67 GIRFPPYPGQFGSDREF-GSQPTTQESNKSSLLDPDSVSDRVHTTKSNSRKRKSIPSGNG 125

Query:    89 NGNRVNDS-DGKRIKTSGSRDDNH---HSKAEAEPSSVKPAEQ---------NSQPPEPP 135
               +  + S      K SG    +     SK +   SS    E+         +++PPE P
Sbjct:   126 KESPASSSLTASNSKVSGENGGSKGGKRSKQDVAGSSKNGVEKCDSKGDNKDDAKPPEAP 185

Query:   136 KQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYI 195
             K DYIHVRARRGQATDSHSLAERARREKISERM +LQDLVPGCN++ GKA++LDEIINY+
Sbjct:   186 K-DYIHVRARRGQATDSHSLAERARREKISERMTLLQDLVPGCNRITGKAVMLDEIINYV 244

Query:   196 QSLQRQVEFLSMKLEAVNTRM 216
             QSLQRQVEFLSMKL  VN RM
Sbjct:   245 QSLQRQVEFLSMKLATVNPRM 265

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

UNIPROTKB|Q5N802 P0004D12.24 "BHLH transcription factor" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
 Identities = 96/191 (50%), Positives = 120/191 (62%)

Query:    42 QFGTNREVSG-DDPV----NLEHKMAHGNGVRKRRDVEDESAKHVSTSSGNGNGNRVNDS 96
             + G  R+ S   DP      +  K A     RKR+     S K     S         DS
Sbjct:   167 ELGNTRDESSVSDPAPGGAEIPPKGASDGNARKRK----ASGKGKGKDSPMSTSAAKEDS 222

Query:    97 DGKRIKT---SGSRDDNHHSKAEAEPSSVKPA-------EQNSQPPEPPKQDYIHVRARR 146
              GKR K+   S +  + +  K +A  S+ +         + +S+PPEPPK DYIHVRARR
Sbjct:   223 SGKRCKSTEESNAAAEENSGKGKAAQSNSENGGGKKQGKDSSSKPPEPPK-DYIHVRARR 281

Query:   147 GQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLS 206
             G+ATDSHSLAER RREKIS+RMK+LQDLVPGCNKV+GKA++LDEIINY+QSLQRQVEFLS
Sbjct:   282 GEATDSHSLAERVRREKISQRMKLLQDLVPGCNKVVGKAVMLDEIINYVQSLQRQVEFLS 341

Query:   207 MKLEAVNTRMN 217
             MKL  VN +++
Sbjct:   342 MKLATVNPQLD 352

GO:0005634 "nucleus" evidence=IC

TAIR|locus:2205420 AT1G68920 [Arabidopsis thaliana (taxid:3702)]

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 92/204 (45%), Positives = 119/204 (58%)

Query:    49 VSGDDPVNLEHKMAHGNGVRKRRDVEDESAKHVSTSSGNGNGNRVNDSDGKRIKTSGSRD 108
             V G   V+ + + + GNG +K R+    + K       N    + + S     +   + D
Sbjct:   208 VPGSGNVSEDTQSSGGNG-QKGRETSSNTKKRKRNGQKNSEAAQSHRSQQSEEEPDNNGD 266

Query:   109 DNHHSKAEAEPSSVKP---AEQNSQPPEPPKQDYIHVRARRGQATDSHSLAERARREKIS 165
             +  + +        K     +Q  Q  +PPK  YIHVRARRGQAT+SHSLAER RREKIS
Sbjct:   267 EKRNDEQSPNSPGKKSNSGKQQGKQSSDPPKDGYIHVRARRGQATNSHSLAERVRREKIS 326

Query:   166 ERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRMNPGIEVFPP 225
             ERMK LQDLVPGCNKV GKA++LDEIINY+QSLQRQVEFLSMKL  VN +M+  +E    
Sbjct:   327 ERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPQMDFNLEGLLA 386

Query:   226 KDFTQ-QTFDTAGMPFVSQATREY 248
             KD  Q +   ++  PF    +  Y
Sbjct:   387 KDALQLRAGSSSTTPFPPNMSMAY 410

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	269
smart00353	53	smart00353, HLH, helix loop helix domain	1e-11
cd00083	60	cd00083, HLH, Helix-loop-helix domain, found in sp	1e-09
pfam00010	52	pfam00010, HLH, Helix-loop-helix DNA-binding domai	1e-08

>gnl|CDD|197674 smart00353, HLH, helix loop helix domain

 Score = 58.4 bits (142), Expect = 1e-11
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 2/52 (3%)

Query: 154 SLAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQRQVE 203
           +  ER RR KI+E    L+ L+P    NK + KA +L   I YI+SLQ +++
Sbjct: 1   NARERRRRRKINEAFDELRSLLPTLPKNKKLSKAEILRLAIEYIKSLQEELQ 52

Length = 53

>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

 Score = 52.6 bits (127), Expect = 1e-09
 Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query: 146 RGQATDSHSLAERARREKISERMKILQDLVPGCNKV--IGKALVLDEIINYIQSLQRQVE 203
           R    ++H+L ER RRE+I++    L+ L+P       + KA +L + ++YI+SLQ  ++
Sbjct: 1   RKSRREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ 60

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and have a PAS domain which allows the dimerization between PAS proteins, the binding of small molecules (e.g., dioxin), and interactions with non-PAS proteins. Length = 60

>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain

 Score = 49.8 bits (120), Expect = 1e-08
 Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 152 SHSLAERARREKISERMKILQDLVPGCNKV-IGKALVLDEIINYIQSLQ 199
           +H+  ER RR++I++  + L++L+P      + KA +L   I YI+ LQ
Sbjct: 4   AHNERERRRRDRINDAFEELRELLPTPPNKKLSKAEILRLAIEYIKHLQ 52

Length = 52

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	269
cd00083	60	HLH Helix-loop-helix domain, found in specific DNA	99.44
smart00353	53	HLH helix loop helix domain.	99.37
PF00010	55	HLH: Helix-loop-helix DNA-binding domain only nucl	99.36
KOG1318	411	consensus Helix loop helix transcription factor EB	99.3
KOG1319	229	consensus bHLHZip transcription factor BIGMAX [Tra	98.88
KOG4304	250	consensus Transcriptional repressors of the hairy/	98.49
KOG2483	232	consensus Upstream transcription factor 2/L-myc-2	98.36
KOG2588	953	consensus Predicted DNA-binding protein [Transcrip	98.31
KOG3561	803	consensus Aryl-hydrocarbon receptor nuclear transl	98.24
PLN03217	93	transcription factor ATBS1; Provisional	98.11
KOG3960	284	consensus Myogenic helix-loop-helix transcription	97.61
KOG0561	373	consensus bHLH transcription factor [Transcription	97.42
KOG4029	228	consensus Transcription factor HAND2/Transcription	97.3
KOG3910	632	consensus Helix loop helix transcription factor [T	97.16
KOG3582	856	consensus Mlx interactors and related transcriptio	94.5
KOG4447	173	consensus Transcription factor TWIST [Transcriptio	93.97
KOG3898	254	consensus Transcription factor NeuroD and related	89.48
KOG3558	768	consensus Hypoxia-inducible factor 1/Neuronal PAS	85.29
KOG3559	598	consensus Transcriptional regulator SIM1 [Transcri	80.26

>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

Probab=99.44  E-value=1.4e-13  Score=97.87  Aligned_cols=54  Identities=37%  Similarity=0.654  Sum_probs=48.7

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHhcCCCC--CCCCChhhHHHHHHHHHHHHHHHHH
Q 024344          150 TDSHSLAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQRQVE  203 (269)
Q Consensus       150 ~~~H~~aER~RRekIner~~~LrsLVP~~--~K~~dKasIL~eAI~YIk~LQ~qV~  203 (269)
                      +..|+..||.||++||+.|..|+.|||.+  ...++|++||..||+||+.|+.+++
T Consensus         5 r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~~   60 (60)
T cd00083           5 REAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ   60 (60)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence            45799999999999999999999999998  2445999999999999999998763

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and

>smart00353 HLH helix loop helix domain

Probab=99.37  E-value=1.6e-12  Score=91.01  Aligned_cols=49  Identities=41%  Similarity=0.605  Sum_probs=44.5

Q ss_pred             chHHHHHHHHHHHHHHHHHhcCCCC---CCCCChhhHHHHHHHHHHHHHHHHH
Q 024344          154 SLAERARREKISERMKILQDLVPGC---NKVIGKALVLDEIINYIQSLQRQVE  203 (269)
Q Consensus       154 ~~aER~RRekIner~~~LrsLVP~~---~K~~dKasIL~eAI~YIk~LQ~qV~  203 (269)
                      +..||+||++||+.|..|+.|||.+   .++ +|++||..||+||++|+.+++
T Consensus         1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~-~k~~iL~~ai~yi~~L~~~~~   52 (53)
T smart00353        1 NARERRRRRKINEAFDELRSLLPTLPNNKKL-SKAEILRLAIEYIKSLQEELQ   52 (53)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHh
Confidence            4689999999999999999999964   454 999999999999999999886

>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt)

Probab=99.36  E-value=1.1e-12  Score=93.23  Aligned_cols=49  Identities=37%  Similarity=0.739  Sum_probs=44.7

Q ss_pred             CccchHHHHHHHHHHHHHHHHHhcCCCC----CCCCChhhHHHHHHHHHHHHH
Q 024344          151 DSHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ  199 (269)
Q Consensus       151 ~~H~~aER~RRekIner~~~LrsLVP~~----~K~~dKasIL~eAI~YIk~LQ  199 (269)
                      ..|+..||+||.+||+.|..|+.|||.+    ....+|++||+.||+||+.||
T Consensus         3 ~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq   55 (55)
T PF00010_consen    3 QKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ   55 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence            3699999999999999999999999987    233599999999999999997

; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....

>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]

Probab=99.30  E-value=5.9e-12  Score=122.47  Aligned_cols=63  Identities=35%  Similarity=0.560  Sum_probs=53.7

Q ss_pred             ccccccccCCCCCccchHHHHHHHHHHHHHHHHHhcCCCCCC---CCChhhHHHHHHHHHHHHHHH
Q 024344          139 YIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNK---VIGKALVLDEIINYIQSLQRQ  201 (269)
Q Consensus       139 ~~~~r~rr~~~~~~H~~aER~RRekIner~~~LrsLVP~~~K---~~dKasIL~eAI~YIk~LQ~q  201 (269)
                      ......|.+++++.|+.+||+||++||++|++|..|||.|+.   ..+|..||..+++||+.||+.
T Consensus       223 ~~~~~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~  288 (411)
T KOG1318|consen  223 DATALERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQT  288 (411)
T ss_pred             ccchhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHH
Confidence            344445677788999999999999999999999999999942   137999999999999999943

>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]

Probab=98.88  E-value=1.6e-09  Score=96.48  Aligned_cols=65  Identities=31%  Similarity=0.537  Sum_probs=55.2

Q ss_pred             CccchHHHHHHHHHHHHHHHHHhcCCCCCCC------CChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 024344          151 DSHSLAERARREKISERMKILQDLVPGCNKV------IGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTR  215 (269)
Q Consensus       151 ~~H~~aER~RRekIner~~~LrsLVP~~~K~------~dKasIL~eAI~YIk~LQ~qV~~Le~~~e~ln~~  215 (269)
                      ..|.-+||+||+-||..+..|+.|||.|...      ..||.||.++|+||.+|+.++...+.++.+|+..
T Consensus        64 ~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k~  134 (229)
T KOG1319|consen   64 RAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRKD  134 (229)
T ss_pred             HHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3699999999999999999999999987432      3799999999999999998777777666666653

>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]

Probab=98.49  E-value=8.9e-08  Score=88.28  Aligned_cols=51  Identities=33%  Similarity=0.499  Sum_probs=44.5

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHhcCCCCCCC-------CChhhHHHHHHHHHHHHHH
Q 024344          150 TDSHSLAERARREKISERMKILQDLVPGCNKV-------IGKALVLDEIINYIQSLQR  200 (269)
Q Consensus       150 ~~~H~~aER~RRekIner~~~LrsLVP~~~K~-------~dKasIL~eAI~YIk~LQ~  200 (269)
                      +..|-++||+||.|||+.+.+|++|||.+-++       ++||.||+-|++|++.||.
T Consensus        33 k~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~   90 (250)
T KOG4304|consen   33 KVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQR   90 (250)
T ss_pred             hhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhc
Confidence            34678999999999999999999999965322       3899999999999999994

>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]

Probab=98.36  E-value=1.8e-06  Score=79.14  Aligned_cols=56  Identities=29%  Similarity=0.405  Sum_probs=46.7

Q ss_pred             CCCCccchHHHHHHHHHHHHHHHHHhcCCCCCCCC--ChhhHHHHHHHHHHHHHHHHH
Q 024344          148 QATDSHSLAERARREKISERMKILQDLVPGCNKVI--GKALVLDEIINYIQSLQRQVE  203 (269)
Q Consensus       148 ~~~~~H~~aER~RRekIner~~~LrsLVP~~~K~~--dKasIL~eAI~YIk~LQ~qV~  203 (269)
                      .++..|+..||+||..|+++|..|+.+||..+...  ..++||++|++||+.|+.+..
T Consensus        58 ~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~  115 (232)
T KOG2483|consen   58 SSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSA  115 (232)
T ss_pred             cchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHH
Confidence            34568999999999999999999999999664322  369999999999999995433

>KOG2588 consensus Predicted DNA-binding protein [Transcription]

Probab=98.31  E-value=7.6e-07  Score=93.91  Aligned_cols=66  Identities=30%  Similarity=0.541  Sum_probs=55.7

Q ss_pred             CCCCCccchHHHHHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024344          147 GQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAV  212 (269)
Q Consensus       147 ~~~~~~H~~aER~RRekIner~~~LrsLVP~~~K~~dKasIL~eAI~YIk~LQ~qV~~Le~~~e~l  212 (269)
                      +.++.+||++|++-|..|||+|..|++|||+..-+..|..+|..||+||++|+...+.|...+..+
T Consensus       274 ~~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~l  339 (953)
T KOG2588|consen  274 GEKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENASL  339 (953)
T ss_pred             CcccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhhhh
Confidence            456789999999999999999999999999886555999999999999999997666555444433

>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]

Probab=98.24  E-value=1.3e-06  Score=91.54  Aligned_cols=52  Identities=21%  Similarity=0.382  Sum_probs=47.7

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHhcCCCCC---CCCChhhHHHHHHHHHHHHHHH
Q 024344          150 TDSHSLAERARREKISERMKILQDLVPGCN---KVIGKALVLDEIINYIQSLQRQ  201 (269)
Q Consensus       150 ~~~H~~aER~RRekIner~~~LrsLVP~~~---K~~dKasIL~eAI~YIk~LQ~q  201 (269)
                      +.+|+.+||+||+++|.-|.+|.+|||.|.   .++||.+||.+||.+|+.+++.
T Consensus        21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~   75 (803)
T KOG3561|consen   21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ   75 (803)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence            458999999999999999999999999996   4459999999999999999874

>PLN03217 transcription factor ATBS1; Provisional

Probab=98.11  E-value=9.1e-06  Score=64.50  Aligned_cols=54  Identities=35%  Similarity=0.540  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHhcCCCC------CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 024344          161 REKISERMKILQDLVPGC------NKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTR  215 (269)
Q Consensus       161 RekIner~~~LrsLVP~~------~K~~dKasIL~eAI~YIk~LQ~qV~~Le~~~e~ln~~  215 (269)
                      -+.|++.+..||.|+|..      .+. .-+-||+|+++||+.|+++|..|.+.+.+|...
T Consensus        19 ddqi~dLvsKLq~llPe~r~~r~s~k~-saskvLqEtC~YIrsLhrEvDdLSerLs~LL~t   78 (93)
T PLN03217         19 EDQINDLIIKLQQLLPELRDSRRSDKV-SAARVLQDTCNYIRNLHREVDDLSERLSELLAN   78 (93)
T ss_pred             HHHHHHHHHHHHHHChHHHhhhccccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            468999999999999954      234 677899999999999999999999999887654

>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]

Probab=97.61  E-value=0.00015  Score=67.54  Aligned_cols=56  Identities=25%  Similarity=0.345  Sum_probs=48.7

Q ss_pred             cchHHHHHHHHHHHHHHHHHhcC-CCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 024344          153 HSLAERARREKISERMKILQDLV-PGCNKVIGKALVLDEIINYIQSLQRQVEFLSMK  208 (269)
Q Consensus       153 H~~aER~RRekIner~~~LrsLV-P~~~K~~dKasIL~eAI~YIk~LQ~qV~~Le~~  208 (269)
                      -.+.||+|=.|+|+.|.+|+.-- ++-++..-|+.||-.||+||..||.-++++...
T Consensus       122 ATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~  178 (284)
T KOG3960|consen  122 ATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQA  178 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            45899999999999999998754 666776799999999999999999988887653

>KOG0561 consensus bHLH transcription factor [Transcription]

Probab=97.42  E-value=9.4e-05  Score=70.45  Aligned_cols=50  Identities=28%  Similarity=0.448  Sum_probs=44.1

Q ss_pred             ccchHHHHHHHHHHHHHHHHHhcCCCC--CCCCChhhHHHHHHHHHHHHHHHH
Q 024344          152 SHSLAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQRQV  202 (269)
Q Consensus       152 ~H~~aER~RRekIner~~~LrsLVP~~--~K~~dKasIL~eAI~YIk~LQ~qV  202 (269)
                      --|..||+|=.-||-.|..|+.|+|.-  .|. +||.||+.+.+||.+|+.+.
T Consensus        63 IANsNERRRMQSINAGFqsLr~LlPr~eGEKL-SKAAILQQTa~yI~~Le~~K  114 (373)
T KOG0561|consen   63 IANSNERRRMQSINAGFQSLRALLPRKEGEKL-SKAAILQQTADYIHQLEGHK  114 (373)
T ss_pred             hhcchHHHHHHhhhHHHHHHHHhcCcccchhh-HHHHHHHHHHHHHHHHHhcc
Confidence            357889999999999999999999954  465 99999999999999998543

>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]

Probab=97.30  E-value=0.00022  Score=64.21  Aligned_cols=57  Identities=21%  Similarity=0.293  Sum_probs=48.9

Q ss_pred             ccchHHHHHHHHHHHHHHHHHhcCCCC---CCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 024344          152 SHSLAERARREKISERMKILQDLVPGC---NKVIGKALVLDEIINYIQSLQRQVEFLSMK  208 (269)
Q Consensus       152 ~H~~aER~RRekIner~~~LrsLVP~~---~K~~dKasIL~eAI~YIk~LQ~qV~~Le~~  208 (269)
                      .++..||.|=..+|..|..||.+||..   .|+..|+.+|.-||.||++|+.-++.-...
T Consensus       112 ~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~  171 (228)
T KOG4029|consen  112 ARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAP  171 (228)
T ss_pred             hhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccC
Confidence            467789999999999999999999943   455699999999999999999877766543

>KOG3910 consensus Helix loop helix transcription factor [Transcription]

Probab=97.16  E-value=0.00042  Score=69.74  Aligned_cols=55  Identities=27%  Similarity=0.247  Sum_probs=46.7

Q ss_pred             CccchHHHHHHHHHHHHHHHHHhcCCC---CCCCCChhhHHHHHHHHHHHHHHHHHHH
Q 024344          151 DSHSLAERARREKISERMKILQDLVPG---CNKVIGKALVLDEIINYIQSLQRQVEFL  205 (269)
Q Consensus       151 ~~H~~aER~RRekIner~~~LrsLVP~---~~K~~dKasIL~eAI~YIk~LQ~qV~~L  205 (269)
                      ...++.||-|=..||+.|++|..+.--   ..|..-|.-||..||.-|-.|++||.+-
T Consensus       528 ~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRER  585 (632)
T KOG3910|consen  528 MANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRER  585 (632)
T ss_pred             hhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHc
Confidence            468999999999999999999988642   3344479999999999999999999863

>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]

Probab=94.50  E-value=0.013  Score=61.38  Aligned_cols=96  Identities=21%  Similarity=0.282  Sum_probs=72.5

Q ss_pred             CCCCccchHHHHHHHHHHHHHHHHHhcCCCCCCC----CChhhHHHHHHHHHHHHH-------HHHHHHHHHHHHhhccC
Q 024344          148 QATDSHSLAERARREKISERMKILQDLVPGCNKV----IGKALVLDEIINYIQSLQ-------RQVEFLSMKLEAVNTRM  216 (269)
Q Consensus       148 ~~~~~H~~aER~RRekIner~~~LrsLVP~~~K~----~dKasIL~eAI~YIk~LQ-------~qV~~Le~~~e~ln~~l  216 (269)
                      .....|+.+|.+||++|.-.|..|.+++.+...+    +.++.-++..++||..++       ++...|.++.+.+|.-+
T Consensus       650 ~r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e~~~lr~~~s~~~A~~  729 (856)
T KOG3582|consen  650 NRPITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEEAHSLRKEISELNAVI  729 (856)
T ss_pred             CCcccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchhhhhhhhhhHHHHHHH
Confidence            3456899999999999999999999999866443    255666999999998877       45556778888888888


Q ss_pred             CCCcccCCCCCCCc--cccCCCCCccccc
Q 024344          217 NPGIEVFPPKDFTQ--QTFDTAGMPFVSQ  243 (269)
Q Consensus       217 ~~~~~~~p~~~~~q--~~~~~~g~~f~~q  243 (269)
                      +.+.+..+...+..  ..|++.+..|..-
T Consensus       730 ~~~~q~p~aT~vp~~r~r~~hm~~~~~~~  758 (856)
T KOG3582|consen  730 SACQQPPPATGVPGTRLRFDHMGDMFDSY  758 (856)
T ss_pred             HHhhcCCCccCCcchhhhHHhhhhhhhhc
Confidence            77777777776553  4555555555443

>KOG4447 consensus Transcription factor TWIST [Transcription]

Probab=93.97  E-value=0.03  Score=49.16  Aligned_cols=50  Identities=24%  Similarity=0.377  Sum_probs=44.3

Q ss_pred             CccchHHHHHHHHHHHHHHHHHhcCCCC--CCCCChhhHHHHHHHHHHHHHHH
Q 024344          151 DSHSLAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQRQ  201 (269)
Q Consensus       151 ~~H~~aER~RRekIner~~~LrsLVP~~--~K~~dKasIL~eAI~YIk~LQ~q  201 (269)
                      .-|++.||+|-..+|+.|..||.+||..  .|. +|.-.|+-|-.||-+|=.-
T Consensus        80 v~anvrerqRtqsLn~AF~~lr~iiptlPsdkl-SkiqtLklA~ryidfl~~v  131 (173)
T KOG4447|consen   80 VMANVRERQRTQSLNEAFAALRKIIPTLPSDKL-SKIQTLKLAARYIDFLYQV  131 (173)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHhhcCCCCcccc-ccccchhhcccCCchhhhc
Confidence            4699999999999999999999999965  555 8999999999999998643

>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]

Probab=89.48  E-value=0.97  Score=42.02  Aligned_cols=48  Identities=25%  Similarity=0.427  Sum_probs=41.6

Q ss_pred             ccchHHHHHHHHHHHHHHHHHhcCCCC---CCCCChhhHHHHHHHHHHHHHH
Q 024344          152 SHSLAERARREKISERMKILQDLVPGC---NKVIGKALVLDEIINYIQSLQR  200 (269)
Q Consensus       152 ~H~~aER~RRekIner~~~LrsLVP~~---~K~~dKasIL~eAI~YIk~LQ~  200 (269)
                      .-|..||.|=-.+|+-|..||.+||..   .|+ .|+..|.-|-+||..|++
T Consensus        75 kaNaRER~RMH~LNdAld~LReviP~~~~~~kl-skIetl~~a~~yi~als~  125 (254)
T KOG3898|consen   75 KANARERTRMHDLNDALDALREVIPHGLHPPKL-SKIETLRLAANYIAALSE  125 (254)
T ss_pred             cccchhhccccchhHHHHHhHhhccCcCCCCCC-CcchhHHhhhcchhhhcc
Confidence            457889999999999999999999943   344 899999999999999884

>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]

Probab=85.29  E-value=0.69  Score=48.82  Aligned_cols=44  Identities=30%  Similarity=0.354  Sum_probs=37.0

Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCC---CCCCChhhHHHHHHHHHHHH
Q 024344          155 LAERARREKISERMKILQDLVPGC---NKVIGKALVLDEIINYIQSL  198 (269)
Q Consensus       155 ~aER~RRekIner~~~LrsLVP~~---~K~~dKasIL~eAI~YIk~L  198 (269)
                      -+.|.||.|-|+-|.+|..+||--   .-..|||+|+--||-|++-=
T Consensus        52 dAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRlr   98 (768)
T KOG3558|consen   52 DAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRLR   98 (768)
T ss_pred             hhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHHH
Confidence            578999999999999999999932   22249999999999998743

>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]

Probab=80.26  E-value=1.9  Score=43.50  Aligned_cols=45  Identities=27%  Similarity=0.332  Sum_probs=38.1

Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCC---CCCCChhhHHHHHHHHHHHHH
Q 024344          155 LAERARREKISERMKILQDLVPGC---NKVIGKALVLDEIINYIQSLQ  199 (269)
Q Consensus       155 ~aER~RRekIner~~~LrsLVP~~---~K~~dKasIL~eAI~YIk~LQ  199 (269)
                      .+.|.||++-|-.|.+|..|+|-.   ..+.||++|+.-+..|||.-.
T Consensus         7 naA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKmr~   54 (598)
T KOG3559|consen    7 NAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKMRN   54 (598)
T ss_pred             hHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHHHH
Confidence            567999999999999999999943   223599999999999998644

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	269
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	3e-20
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	6e-10
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	6e-09
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	1e-08
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	4e-08
1a0a_A	63	BHLH, protein (phosphate system positive regulator	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	8e-04

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Length = 82

 Score = 81.7 bits (202), Expect = 3e-20
 Identities = 21/73 (28%), Positives = 41/73 (56%)

Query: 145 RRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEF 204
            RG+   +H+  E+  R  I++++  L+DLV G    + K+ VL + I+YI+ LQ   + 
Sbjct: 2   SRGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQK 61

Query: 205 LSMKLEAVNTRMN 217
           L  +  ++ T ++
Sbjct: 62  LKQENLSLRTAVH 74

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Length = 65

 Score = 53.1 bits (128), Expect = 6e-10
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 5/58 (8%)

Query: 151 DSHSLAERARREKISERMKILQDLVPGCNKVIG-----KALVLDEIINYIQSLQRQVE 203
             H+  ER RR+KI+  +  L  ++P  +         K  +L +  +YIQ L++   
Sbjct: 7   AQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Length = 83

 Score = 50.8 bits (122), Expect = 6e-09
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 151 DSHSLAERARREKISERMKILQDLVPGCNKV-IGKALVLDEIINYIQSLQRQVEFLSMKL 209
             H+  ER RR+ I +    L+D VP        +A +LD+   YIQ ++R+       +
Sbjct: 4   AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDI 63

Query: 210 EA 211
           + 
Sbjct: 64  DD 65

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Length = 80

 Score = 50.0 bits (120), Expect = 1e-08
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 151 DSHSLAERARREKISERMKILQDLVPGCNKV-IGKALVLDEIINYIQSLQRQVEFLSMKL 209
             H+  ER RR+ I +    L+D VP        +A +LD+   YIQ ++R+       +
Sbjct: 14  AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDI 73

Query: 210 EA 211
           + 
Sbjct: 74  DD 75

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Length = 88

 Score = 48.9 bits (117), Expect = 4e-08
 Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 152 SHSLAERARREKISERMKILQDLVPGCNKV--IGKALVLDEIINYIQSLQRQVEFLSMKL 209
           +H++ ER RR ++      L+D +P         K ++L +   YI S+Q + + L  + 
Sbjct: 9   THNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEE 68

Query: 210 EA 211
           + 
Sbjct: 69  DL 70

>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1 Length = 63

 Score = 40.2 bits (94), Expect = 3e-05
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 6/58 (10%)

Query: 152 SHSLAERARREKISERMKILQDLVPGCNK------VIGKALVLDEIINYIQSLQRQVE 203
           SH  AE+ARR +++  +  L  L+P   K         KA  ++    YI+ LQ+   
Sbjct: 5   SHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 7e-05
 Identities = 27/150 (18%), Positives = 60/150 (40%), Gaps = 37/150 (24%)

Query: 125 AEQNSQPPEPPKQDYIHVRARRGQATDSHSLAER--ARREKISERMKILQDLVPGCNKVI 182
             +  QP     + YI  R R     D+   A+   +R +   +  + L +L P  N +I
Sbjct: 99  KTEQRQP-SMMTRMYIEQRDR--LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155

Query: 183 ------GK-ALVLDEIINYIQSLQRQVEF----LSMK-----------LEAVNTRMNPGI 220
                 GK  + LD  ++Y   +Q +++F    L++K           L+ +  +++P  
Sbjct: 156 DGVLGSGKTWVALDVCLSY--KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP-- 211

Query: 221 EVFPPKDFTQQTFDTAGMPFVSQATREYSR 250
                 ++T ++  ++ +     + +   R
Sbjct: 212 ------NWTSRSDHSSNIKLRIHSIQAELR 235

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Length = 80

 Score = 36.3 bits (84), Expect = 8e-04
 Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 16/76 (21%)

Query: 152 SHSLAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINY--------------I 195
           +H+  E+ RR  +   ++ L+ LVP    +       +L +   +              I
Sbjct: 4   THNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQI 63

Query: 196 QSLQRQVEFLSMKLEA 211
             LQR+   L  +LE 
Sbjct: 64  DQLQREQRHLKRQLEK 79

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	269
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	99.71
4ati_A	118	MITF, microphthalmia-associated transcription fact	99.69
4h10_B	71	Circadian locomoter output cycles protein kaput; B	99.61
1a0a_A	63	BHLH, protein (phosphate system positive regulator	99.59
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	99.59
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	99.58
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	99.57
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	99.53
4h10_A	73	ARYL hydrocarbon receptor nuclear translocator-LI	99.52
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	99.45
3u5v_A	76	Protein MAX, transcription factor E2-alpha chimer;	99.45
1mdy_A	68	Protein (MYOD BHLH domain); protein-DNA complex, t	99.11
2ql2_B	60	Neurod1, neurogenic differentiation factor 1; basi	99.07
4f3l_A	361	Mclock, circadian locomoter output cycles protein	98.98
4f3l_B	387	BMAL1B; BHLH, PAS, circadian rhythm proteins, tran	98.88
4ath_A	83	MITF, microphthalmia-associated transcription fact	98.78
2lfh_A	68	DNA-binding protein inhibitor ID-3; structural gen	98.63
4aya_A	97	DNA-binding protein inhibitor ID-2; cell cycle; 2.	98.12

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C

Probab=99.71  E-value=3.8e-18  Score=130.92  Aligned_cols=68  Identities=28%  Similarity=0.405  Sum_probs=61.8

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 024344          149 ATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRM  216 (269)
Q Consensus       149 ~~~~H~~aER~RRekIner~~~LrsLVP~~~K~~dKasIL~eAI~YIk~LQ~qV~~Le~~~e~ln~~l  216 (269)
                      .+.+|+++||+||++||++|..|++|||+++..++|++||.+||+||++||.+++.|+.+++.|...+
T Consensus         6 rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~   73 (82)
T 1am9_A            6 KRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAV   73 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44689999999999999999999999999854459999999999999999999999999998887654

>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A

Probab=99.69  E-value=3.5e-17  Score=133.55  Aligned_cols=71  Identities=32%  Similarity=0.451  Sum_probs=50.9

Q ss_pred             cccccccccCCCCCccchHHHHHHHHHHHHHHHHHhcCCCCCC---CCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 024344          138 DYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNK---VIGKALVLDEIINYIQSLQRQVEFLSMK  208 (269)
Q Consensus       138 d~~~~r~rr~~~~~~H~~aER~RRekIner~~~LrsLVP~~~K---~~dKasIL~eAI~YIk~LQ~qV~~Le~~  208 (269)
                      +..+..+++.+++.+|+++||+||++||++|.+|++|||.|.+   .++|++||++||+||++||.+++.|+..
T Consensus        16 ~~~~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~   89 (118)
T 4ati_A           16 SEARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL   89 (118)
T ss_dssp             ---------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456677788889999999999999999999999999999853   2489999999999999999999999854

>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.61  E-value=3.1e-16  Score=118.26  Aligned_cols=60  Identities=22%  Similarity=0.414  Sum_probs=53.4

Q ss_pred             CCCCCccchHHHHHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 024344          147 GQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLS  206 (269)
Q Consensus       147 ~~~~~~H~~aER~RRekIner~~~LrsLVP~~~K~~dKasIL~eAI~YIk~LQ~qV~~Le  206 (269)
                      .+.+.+|+++||+||++||++|.+|++|||++...+||++||+.||+||++||.++..|+
T Consensus         6 ~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~   65 (71)
T 4h10_B            6 KAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE   65 (71)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             hHHhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence            344568999999999999999999999999875444999999999999999999998775

>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1

Probab=99.59  E-value=1.7e-16  Score=116.71  Aligned_cols=55  Identities=31%  Similarity=0.447  Sum_probs=48.4

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHhcCCCCCC------CCChhhHHHHHHHHHHHHHHHHH
Q 024344          149 ATDSHSLAERARREKISERMKILQDLVPGCNK------VIGKALVLDEIINYIQSLQRQVE  203 (269)
Q Consensus       149 ~~~~H~~aER~RRekIner~~~LrsLVP~~~K------~~dKasIL~eAI~YIk~LQ~qV~  203 (269)
                      ++++|+++||+||++||+.|..|++|||.+.+      ..+||+||+.||+||++||++|+
T Consensus         2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~   62 (63)
T 1a0a_A            2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS   62 (63)
T ss_dssp             CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence            35689999999999999999999999997632      23799999999999999998763

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1

Probab=99.59  E-value=3.6e-16  Score=114.42  Aligned_cols=56  Identities=27%  Similarity=0.428  Sum_probs=49.8

Q ss_pred             CCCCccchHHHHHHHHHHHHHHHHHhcCCCCCC-----CCChhhHHHHHHHHHHHHHHHHH
Q 024344          148 QATDSHSLAERARREKISERMKILQDLVPGCNK-----VIGKALVLDEIINYIQSLQRQVE  203 (269)
Q Consensus       148 ~~~~~H~~aER~RRekIner~~~LrsLVP~~~K-----~~dKasIL~eAI~YIk~LQ~qV~  203 (269)
                      ..+.+|+.+||+||++||+.|..|++|||.|..     .++|++||.+||+||++||.+++
T Consensus         4 ~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~   64 (65)
T 1an4_A            4 KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH   64 (65)
T ss_dssp             CCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred             HHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence            456789999999999999999999999999862     24999999999999999997653

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.58  E-value=2e-15  Score=114.83  Aligned_cols=65  Identities=28%  Similarity=0.483  Sum_probs=59.3

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHhcCCCC--CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 024344          149 ATDSHSLAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNT  214 (269)
Q Consensus       149 ~~~~H~~aER~RRekIner~~~LrsLVP~~--~K~~dKasIL~eAI~YIk~LQ~qV~~Le~~~e~ln~  214 (269)
                      .+.+|+..||+||..||+.|..|++|||.+  .|+ +|++||..||+||+.|+.+++.|+.+++.|..
T Consensus        12 ~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~-sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~   78 (80)
T 1hlo_A           12 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKA-SRAQILDKATEYIQYMRRKNHTHQQDIDDLKR   78 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345899999999999999999999999987  354 99999999999999999999999999988764

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=99.57  E-value=4.2e-15  Score=113.50  Aligned_cols=63  Identities=29%  Similarity=0.502  Sum_probs=56.1

Q ss_pred             CccchHHHHHHHHHHHHHHHHHhcCCCC--CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 024344          151 DSHSLAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNT  214 (269)
Q Consensus       151 ~~H~~aER~RRekIner~~~LrsLVP~~--~K~~dKasIL~eAI~YIk~LQ~qV~~Le~~~e~ln~  214 (269)
                      .+|+..||+||.+||+.|..|+++||.+  .|+ +|++||..||+||++|+.+++.|+.+++.+..
T Consensus         4 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~-sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~   68 (83)
T 1nkp_B            4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKA-SRAQILDKATEYIQYMRRKNHTHQQDIDDLKR   68 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999999999986  454 99999999999999999888888877766654

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.53  E-value=1.2e-14  Score=113.01  Aligned_cols=62  Identities=26%  Similarity=0.420  Sum_probs=53.8

Q ss_pred             CccchHHHHHHHHHHHHHHHHHhcCCCCC---CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024344          151 DSHSLAERARREKISERMKILQDLVPGCN---KVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVN  213 (269)
Q Consensus       151 ~~H~~aER~RRekIner~~~LrsLVP~~~---K~~dKasIL~eAI~YIk~LQ~qV~~Le~~~e~ln  213 (269)
                      .+|+..||+||.+||++|..|+++||.+.   |. +|++||.+||+||++|+.+.+.|...++.+.
T Consensus         8 ~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~-sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~   72 (88)
T 1nkp_A            8 RTHNVLERQRRNELKRSFFALRDQIPELENNEKA-PKVVILKKATAYILSVQAEEQKLISEEDLLR   72 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999999763   55 9999999999999999988887665554443

>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.52  E-value=1.7e-15  Score=114.57  Aligned_cols=54  Identities=31%  Similarity=0.509  Sum_probs=48.0

Q ss_pred             cCCCCCccchHHHHHHHHHHHHHHHHHhcCCCC----CCCCChhhHHHHHHHHHHHHHH
Q 024344          146 RGQATDSHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQR  200 (269)
Q Consensus       146 r~~~~~~H~~aER~RRekIner~~~LrsLVP~~----~K~~dKasIL~eAI~YIk~LQ~  200 (269)
                      ..+++.+|+++||+||++||+.|.+|+.|||.|    .|+ |||+||+.||+||+.|+.
T Consensus         6 ~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~Kl-dKasIL~~tV~ylk~l~~   63 (73)
T 4h10_A            6 IKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKL-DKLTVLRMAVQHMKTLRG   63 (73)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCC-CHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccc-cHHHHHHHHHHHHHHHhc
Confidence            344556899999999999999999999999987    455 999999999999999973

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1

Probab=99.45  E-value=1.4e-13  Score=105.52  Aligned_cols=63  Identities=17%  Similarity=0.236  Sum_probs=55.3

Q ss_pred             CccchHHHHHHHHHHHHHHHHHhcCCCC---CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 024344          151 DSHSLAERARREKISERMKILQDLVPGC---NKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNT  214 (269)
Q Consensus       151 ~~H~~aER~RRekIner~~~LrsLVP~~---~K~~dKasIL~eAI~YIk~LQ~qV~~Le~~~e~ln~  214 (269)
                      ..|+..||+||..||+.|..|+++||.+   .|. +|+.||..||+||+.|+.+.+.|..+++.+..
T Consensus         3 ~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~-sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~   68 (80)
T 1nlw_A            3 STHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRH-TTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQR   68 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCC-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999999999965   344 89999999999999999988888777766554

>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*

Probab=99.45  E-value=4.2e-14  Score=107.59  Aligned_cols=57  Identities=28%  Similarity=0.372  Sum_probs=48.8

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHhcCCCC---CCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 024344          150 TDSHSLAERARREKISERMKILQDLVPGC---NKVIGKALVLDEIINYIQSLQRQVEFLS  206 (269)
Q Consensus       150 ~~~H~~aER~RRekIner~~~LrsLVP~~---~K~~dKasIL~eAI~YIk~LQ~qV~~Le  206 (269)
                      +.+|+..||+||..||+.|..|+.+||.+   .|..+|+.||..||+||++||++|++++
T Consensus         6 R~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~   65 (76)
T 3u5v_A            6 RAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN   65 (76)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45799999999999999999999999953   3433799999999999999999999875

>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*

Probab=99.11  E-value=6.6e-11  Score=88.26  Aligned_cols=53  Identities=26%  Similarity=0.418  Sum_probs=47.0

Q ss_pred             CccchHHHHHHHHHHHHHHHHHhcCCCC-CCCCChhhHHHHHHHHHHHHHHHHH
Q 024344          151 DSHSLAERARREKISERMKILQDLVPGC-NKVIGKALVLDEIINYIQSLQRQVE  203 (269)
Q Consensus       151 ~~H~~aER~RRekIner~~~LrsLVP~~-~K~~dKasIL~eAI~YIk~LQ~qV~  203 (269)
                      ..|+..||+|+..||+.|..|+++||.. ++..+|+.||..||+||..|+..++
T Consensus        14 ~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L~   67 (68)
T 1mdy_A           14 KAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR   67 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             hHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence            4699999999999999999999999965 3445999999999999999997653

>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}

Probab=99.07  E-value=1.9e-10  Score=83.77  Aligned_cols=52  Identities=23%  Similarity=0.313  Sum_probs=46.7

Q ss_pred             ccchHHHHHHHHHHHHHHHHHhcCCCC--CCCCChhhHHHHHHHHHHHHHHHHH
Q 024344          152 SHSLAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQRQVE  203 (269)
Q Consensus       152 ~H~~aER~RRekIner~~~LrsLVP~~--~K~~dKasIL~eAI~YIk~LQ~qV~  203 (269)
                      .|+..||.|+..||+.|..|+.+||..  +++.+|+.||..||+||..|+..++
T Consensus         5 ~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~   58 (60)
T 2ql2_B            5 KANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR   58 (60)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence            589999999999999999999999965  3445999999999999999998764

>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=98.98  E-value=4.2e-10  Score=103.91  Aligned_cols=55  Identities=24%  Similarity=0.425  Sum_probs=41.3

Q ss_pred             cCCCCCccchHHHHHHHHHHHHHHHHHhcCCCC-CCCCChhhHHHHHHHHHHHHHHH
Q 024344          146 RGQATDSHSLAERARREKISERMKILQDLVPGC-NKVIGKALVLDEIINYIQSLQRQ  201 (269)
Q Consensus       146 r~~~~~~H~~aER~RRekIner~~~LrsLVP~~-~K~~dKasIL~eAI~YIk~LQ~q  201 (269)
                      ...++.+|+.+||+||++||+.|.+|+.|||.. .|+ ||++||..||+||+.|+..
T Consensus         9 ~~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~-dk~~il~~~~~~~~~~~~~   64 (361)
T 4f3l_A            9 DKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKM-DKSTVLQKSIDFLRKHKET   64 (361)
T ss_dssp             ----------CHHHHHHHHHHHHHHHHHTCCSSSCCC-CHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCc-CHHHHHHHHHHHHHHHHhh
Confidence            344566899999999999999999999999944 455 9999999999999999864

>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=98.88  E-value=6.5e-10  Score=104.02  Aligned_cols=54  Identities=30%  Similarity=0.439  Sum_probs=47.6

Q ss_pred             cCCCCCccchHHHHHHHHHHHHHHHHHhcCCC----CCCCCChhhHHHHHHHHHHHHHH
Q 024344          146 RGQATDSHSLAERARREKISERMKILQDLVPG----CNKVIGKALVLDEIINYIQSLQR  200 (269)
Q Consensus       146 r~~~~~~H~~aER~RRekIner~~~LrsLVP~----~~K~~dKasIL~eAI~YIk~LQ~  200 (269)
                      .+.++.+|+.+||+||++||+.|.+|+.|||.    ..|+ ||++||..||+|||.|+.
T Consensus        10 ~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~-dk~~il~~~~~~l~~~~~   67 (387)
T 4f3l_B           10 IKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKL-DKLTVLRMAVQHMKTLRG   67 (387)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCC-CHHHHHHHHHHHHHHHHC
T ss_pred             hhhhcccccchhhcchHHHHHHHHHHHHhcCCCCcccccc-CHHHHHHHHHHHHHHhhc
Confidence            34556789999999999999999999999994    4566 999999999999999984

>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}

Probab=98.78  E-value=1.3e-08  Score=78.84  Aligned_cols=47  Identities=32%  Similarity=0.479  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHhcCCCCCC---CCChhhHHHHHHHHHHHHHHHHHHHHH
Q 024344          161 REKISERMKILQDLVPGCNK---VIGKALVLDEIINYIQSLQRQVEFLSM  207 (269)
Q Consensus       161 RekIner~~~LrsLVP~~~K---~~dKasIL~eAI~YIk~LQ~qV~~Le~  207 (269)
                      |..||++|.+|..|||.++.   ..+|++||..||+||++||.+++.+..
T Consensus         4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e   53 (83)
T 4ath_A            4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKD   53 (83)
T ss_dssp             HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88999999999999998742   239999999999999999987776653

>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.63  E-value=1e-08  Score=76.76  Aligned_cols=47  Identities=23%  Similarity=0.416  Sum_probs=40.9

Q ss_pred             chHHHHHHHHHHHHHHHHHhcCCCC--CCCCChhhHHHHHHHHHHHHHH
Q 024344          154 SLAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQR  200 (269)
Q Consensus       154 ~~aER~RRekIner~~~LrsLVP~~--~K~~dKasIL~eAI~YIk~LQ~  200 (269)
                      +-.||+|...||+.|..||.+||..  +++.+|+.||..||+||..||.
T Consensus        19 ~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~   67 (68)
T 2lfh_A           19 AEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV   67 (68)
T ss_dssp             BCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence            3568888999999999999999965  3445999999999999999984

>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}

Probab=98.12  E-value=5.3e-06  Score=65.87  Aligned_cols=48  Identities=27%  Similarity=0.414  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCC--CCCCChhhHHHHHHHHHHHHHHHHHH
Q 024344          157 ERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQRQVEF  204 (269)
Q Consensus       157 ER~RRekIner~~~LrsLVP~~--~K~~dKasIL~eAI~YIk~LQ~qV~~  204 (269)
                      ||.|=..||+.|..||.+||..  +++.+|..+|.-||+||..|+..++.
T Consensus        33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~   82 (97)
T 4aya_A           33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS   82 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence            5778888999999999999965  44559999999999999999987754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	269
d1uklc_	61	a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId	5e-17
d1am9a_	80	a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxI	4e-15
d1nkpa_	88	a.38.1.1 (A:) Myc proto-oncogene protein {Human (H	4e-14
d1a0aa_	63	a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa	3e-13
d1mdya_	68	a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus muscul	2e-12
d1nkpb_	83	a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T	5e-12
d1an4a_	65	a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien	3e-11
d1nlwa_	79	a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [T	5e-11

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.3 bits (175), Expect = 5e-17
 Identities = 16/57 (28%), Positives = 30/57 (52%)

Query: 161 REKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRMN 217
           R  I++++  L+DLV G +  + K+ VL + I+YI+ LQ+    L  +   +     
Sbjct: 1   RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQENMVLKLANQ 57

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.9 bits (163), Expect = 4e-15
 Identities = 21/73 (28%), Positives = 41/73 (56%)

Query: 145 RRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEF 204
            RG+   +H+  E+  R  I++++  L+DLV G    + K+ VL + I+YI+ LQ   + 
Sbjct: 2   SRGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQK 61

Query: 205 LSMKLEAVNTRMN 217
           L  +  ++ T ++
Sbjct: 62  LKQENLSLRTAVH 74

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.2 bits (156), Expect = 4e-14
 Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 6/79 (7%)

Query: 141 HVRARRGQATDSHSLAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSL 198
           H+  +R     +H++ ER RR ++      L+D +P    N+   K ++L +   YI S+
Sbjct: 2   HMNVKR----RTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSV 57

Query: 199 QRQVEFLSMKLEAVNTRMN 217
           Q + + L  + + +  R  
Sbjct: 58  QAEEQKLISEEDLLRKRRE 76

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.0 bits (148), Expect = 3e-13
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 6/59 (10%)

Query: 151 DSHSLAERARREKISERMKILQDLVPGCNKVIG------KALVLDEIINYIQSLQRQVE 203
           +SH  AE+ARR +++  +  L  L+P   K         KA  ++    YI+ LQ+   
Sbjct: 4   ESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 68

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.1 bits (143), Expect = 2e-12
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 152 SHSLAERARREKISERMKILQDLVPGC-NKVIGKALVLDEIINYIQSLQRQVE 203
           + ++ ER R  K++E  + L+       N+ + K  +L   I YI+ LQ  + 
Sbjct: 15  AATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR 67

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (141), Expect = 5e-12
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 152 SHSLAERARREKISERMKILQDLVPGC-NKVIGKALVLDEIINYIQSLQRQVEFLSMKLE 210
            H+  ER RR+ I +    L+D VP    +   +A +LD+   YIQ ++R+       ++
Sbjct: 5   HHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDID 64

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (134), Expect = 3e-11
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 5/58 (8%)

Query: 151 DSHSLAERARREKISERMKILQDLVPGCNKVIG-----KALVLDEIINYIQSLQRQVE 203
             H+  ER RR+KI+  +  L  ++P  +         K  +L +  +YIQ L++   
Sbjct: 7   AQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (134), Expect = 5e-11
 Identities = 11/68 (16%), Positives = 27/68 (39%), Gaps = 2/68 (2%)

Query: 152 SHSLAERARREKISERMKILQDLVPGCNKV--IGKALVLDEIINYIQSLQRQVEFLSMKL 209
           +H+  E+ RR  +   ++ L+ LVP            +L +   +I+ L+        ++
Sbjct: 4   THNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQI 63

Query: 210 EAVNTRMN 217
           + +     
Sbjct: 64  DQLQREQR 71

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	269
d1am9a_	80	SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}	99.64
d1nlwa_	79	Mad protein {Human (Homo sapiens) [TaxId: 9606]}	99.56
d1nkpb_	83	Max protein {Human (Homo sapiens) [TaxId: 9606]}	99.53
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	99.52
d1a0aa_	63	Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce	99.52
d1uklc_	61	SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}	99.51
d1mdya_	68	Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10	99.5
d1an4a_	65	Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960	99.44

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=5.2e-17  Score=121.81  Aligned_cols=66  Identities=29%  Similarity=0.411  Sum_probs=60.4

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 024344          150 TDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTR  215 (269)
Q Consensus       150 ~~~H~~aER~RRekIner~~~LrsLVP~~~K~~dKasIL~eAI~YIk~LQ~qV~~Le~~~e~ln~~  215 (269)
                      +.+|+.+||+||++||+.|..|++|||++...++|++||..||+||++|+.+++.|..++..+...
T Consensus         7 R~~H~~~Er~RR~~in~~~~~L~~llP~~~~k~~K~~iL~~a~~yI~~L~~~~~~L~~e~~~lk~~   72 (80)
T d1am9a_           7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTA   72 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457999999999999999999999999987556999999999999999999999999988877654

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2.6e-15  Score=111.70  Aligned_cols=65  Identities=17%  Similarity=0.197  Sum_probs=57.7

Q ss_pred             CccchHHHHHHHHHHHHHHHHHhcCCCCC--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 024344          151 DSHSLAERARREKISERMKILQDLVPGCN--KVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTR  215 (269)
Q Consensus       151 ~~H~~aER~RRekIner~~~LrsLVP~~~--K~~dKasIL~eAI~YIk~LQ~qV~~Le~~~e~ln~~  215 (269)
                      ..|+.+||+||++||+.|..|++|||.+.  ...+|++||..||+||+.|+.+++.|..+++.+...
T Consensus         3 ~~Hn~~Er~RR~~in~~f~~L~~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~L~~~   69 (79)
T d1nlwa_           3 STHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQRE   69 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999999763  224999999999999999999999999888777653

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=4.6e-15  Score=111.30  Aligned_cols=64  Identities=27%  Similarity=0.468  Sum_probs=56.0

Q ss_pred             CccchHHHHHHHHHHHHHHHHHhcCCCC-CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 024344          151 DSHSLAERARREKISERMKILQDLVPGC-NKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNT  214 (269)
Q Consensus       151 ~~H~~aER~RRekIner~~~LrsLVP~~-~K~~dKasIL~eAI~YIk~LQ~qV~~Le~~~e~ln~  214 (269)
                      .+|+.+||+||++||+.|..|++|||++ .+.++|++||..||+||++|+.+++.|...++.+..
T Consensus         4 ~~Hn~~Er~RR~~in~~f~~L~~llP~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~l~~   68 (83)
T d1nkpb_           4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKR   68 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999999999976 334599999999999999999988888877766544

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=5.5e-15  Score=112.00  Aligned_cols=65  Identities=25%  Similarity=0.402  Sum_probs=57.6

Q ss_pred             CccchHHHHHHHHHHHHHHHHHhcCCCCC--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 024344          151 DSHSLAERARREKISERMKILQDLVPGCN--KVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTR  215 (269)
Q Consensus       151 ~~H~~aER~RRekIner~~~LrsLVP~~~--K~~dKasIL~eAI~YIk~LQ~qV~~Le~~~e~ln~~  215 (269)
                      ..|+.+||+||++||+.|..|++|||++.  +.++|++||..||+||++|+.+++.|..+++.+...
T Consensus         8 ~~Hn~~Er~RR~~in~~f~~Lr~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~l~~~   74 (88)
T d1nkpa_           8 RTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKR   74 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999999763  234999999999999999999999998888776654

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.52  E-value=3.4e-15  Score=107.34  Aligned_cols=53  Identities=30%  Similarity=0.471  Sum_probs=46.9

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHhcCCCC------CCCCChhhHHHHHHHHHHHHHHHH
Q 024344          150 TDSHSLAERARREKISERMKILQDLVPGC------NKVIGKALVLDEIINYIQSLQRQV  202 (269)
Q Consensus       150 ~~~H~~aER~RRekIner~~~LrsLVP~~------~K~~dKasIL~eAI~YIk~LQ~qV  202 (269)
                      +..|+.+||+||++||+.|..|++|||++      ...++|+.||+.||+||++||++|
T Consensus         3 R~~H~~~Er~RR~~in~~~~~L~~llP~~~~~~~~~~k~sKa~iL~~Av~yI~~Lq~~v   61 (63)
T d1a0aa_           3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG   61 (63)
T ss_dssp             TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCcccccHHHHHHHHHHHHHHHHHhh
Confidence            45799999999999999999999999953      223499999999999999999865

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2.5e-15  Score=107.62  Aligned_cols=56  Identities=29%  Similarity=0.357  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 024344          161 REKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRM  216 (269)
Q Consensus       161 RekIner~~~LrsLVP~~~K~~dKasIL~eAI~YIk~LQ~qV~~Le~~~e~ln~~l  216 (269)
                      |++||++|..|++|||++.+++|||+||.+||+||++||.+++.|++++..+...+
T Consensus         1 R~~in~~f~~L~~lvP~~~~K~~Ka~iL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~   56 (61)
T d1uklc_           1 RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQENMVLKLAN   56 (61)
T ss_dssp             CCCHHHHHHHHHHHHSCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67899999999999999875559999999999999999999999999998877643

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=5.6e-15  Score=107.97  Aligned_cols=53  Identities=25%  Similarity=0.388  Sum_probs=48.1

Q ss_pred             CccchHHHHHHHHHHHHHHHHHhcCCCCC-CCCChhhHHHHHHHHHHHHHHHHH
Q 024344          151 DSHSLAERARREKISERMKILQDLVPGCN-KVIGKALVLDEIINYIQSLQRQVE  203 (269)
Q Consensus       151 ~~H~~aER~RRekIner~~~LrsLVP~~~-K~~dKasIL~eAI~YIk~LQ~qV~  203 (269)
                      ..|+..||+||.+||+.|..|++|||.+. +.++|++||..||+||++||.+|+
T Consensus        14 ~~hn~~Er~Rr~~in~~~~~L~~llP~~~~~k~sK~~iL~~Ai~YI~~Lq~~l~   67 (68)
T d1mdya_          14 KAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR   67 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence            47999999999999999999999999874 345999999999999999998764

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.8e-14  Score=104.11  Aligned_cols=53  Identities=28%  Similarity=0.454  Sum_probs=46.8

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHhcCCCCC-----CCCChhhHHHHHHHHHHHHHHHH
Q 024344          150 TDSHSLAERARREKISERMKILQDLVPGCN-----KVIGKALVLDEIINYIQSLQRQV  202 (269)
Q Consensus       150 ~~~H~~aER~RRekIner~~~LrsLVP~~~-----K~~dKasIL~eAI~YIk~LQ~qV  202 (269)
                      +.+|+.+||+||++||+.|..|++|||.+.     ..++|+.||..||+||+.||++.
T Consensus         6 R~~H~~~Er~RR~~in~~f~~L~~lvP~~~~~~~~~k~sK~~iL~~av~yI~~Lq~~~   63 (65)
T d1an4a_           6 RAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN   63 (65)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            457999999999999999999999999763     12499999999999999999753