Citrus Sinensis ID: 024368

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
MKCVYVFSCRCLDIDFNFHAINTLPYFISRQLFVMGSEGPPAVTIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVRETSIPVEEITRTLAKKGYEVITSDDAGRFVCNYVYYHSLRFAEQNGTKSLFVHVPLFLTIDEETQMQFAASLLEFASQWPNCGWPMDNYNFLLMN
ccEEEEEcccEEEEEcccccccccccccccccccccccccccEEEEEEcccccccccccHHHHHHHHHHHHHHHcccccccEEccEEEEEEEEccccHHHHHHHHHHHHHHHHHHccccccEEEEEEEccccccEEEEEEEEcccccccccccccccccccccccccccccEEEccccHHHHHHHHHHcccEEEEcccccccccHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHHHHHHHccccccccccccccEEcc
ccEEEEEEEEEEcccccHHHHHEHHHHcccEEEEEcccccccEEEEEEcccccccccccHHHHHHHHcHHHHcccccccccEEccEEEEEEcccEEEEEccHHHHHHHHHHHHHHHHccccEEEEEEcccccccccEEEEEEEccccccccccccccccccEccccccccHHEEccccHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHHHHccccEEEEEEcccccccHHHccccHHHHHHHHHHcHccccccccHHEEccc
mkcvyvfscrcldidfnfhaintlpYFISRQLfvmgsegppavtiHVTGFkkfhgvsenptETIVSNLREYMKkkgmpkglilgscniletaghgavapLYQTLQSAInekdsesansRRIIWVHFGVNSGATRFAIEQQAVNeatfrcpdemgwkpqkvpifpadgeisrvretsipvEEITRTLAKKGyevitsddagrfVCNYVYYHSLRfaeqngtkslFVHVPLFLTIDEETQMQFAASLLEFAsqwpncgwpmdnynfllmn
MKCVYVFSCRCLDIDFNFHAINTLPYFISRQLFVMGSEGPPAVTIHVTGFkkfhgvsenpteTIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVpifpadgeisrvretsipveeitrtlakkgyevitsddagrFVCNYVYYHSLRFAEQNGTKSLFVHVPLFLTIDEETQMQFAASLLEFASQWPNCGWPMDNYNFLLMN
MKCVYVFSCRCLDIDFNFHAINTLPYFISRQLFVMGSEGPPAVTIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVRETSIPVEEITRTLAKKGYEVITSDDAGRFVCNYVYYHSLRFAEQNGTKSLFVHVPLFLTIDEETQMQFAASLLEFASQWPNCGWPMDNYNFLLMN
**CVYVFSCRCLDIDFNFHAINTLPYFISRQLFVMGSEGPPAVTIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSA***********RRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVRETSIPVEEITRTLAKKGYEVITSDDAGRFVCNYVYYHSLRFAEQNGTKSLFVHVPLFLTIDEETQMQFAASLLEFASQWPNCGWPMDNYNFLL**
*KCVYVFSCRCLDIDFNFHAINTLPYFISRQ*******GPPAVTIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVRETSIPVEEITRTLAKKGYEVITSDDAGRFVCNYVYYHSLRFAEQNGTKSLFVHVPLFLTIDEETQMQFAASLLEFASQWPNCGWPMDNYNFLLM*
MKCVYVFSCRCLDIDFNFHAINTLPYFISRQLFVMGSEGPPAVTIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVRETSIPVEEITRTLAKKGYEVITSDDAGRFVCNYVYYHSLRFAEQNGTKSLFVHVPLFLTIDEETQMQFAASLLEFASQWPNCGWPMDNYNFLLMN
MKCVYVFSCRCLDIDFNFHAINTLPYFISRQLFVMGSEGPPAVTIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVRETSIPVEEITRTLAKKGYEVITSDDAGRFVCNYVYYHSLRFAEQNGTKSLFVHVPLFLTIDEETQMQFAASLLEFASQWPNCGWPMDNYNFLLMN
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MKCVYVFSCRCLDIDFNFHAINTLPYFISRQLFVMGSEGPPAVTIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVRETSIPVEEITRTLAKKGYEVITSDDAGRFVCNYVYYHSLRFAEQNGTKSLFVHVPLFLTIDEETQMQFAASLLEFASQWPNCGWPMDNYNFLLMN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query268 2.2.26 [Sep-21-2011]
O73944208 Pyrrolidone-carboxylate p yes no 0.619 0.798 0.297 3e-14
O07883220 Pyrrolidone-carboxylate p N/A no 0.611 0.745 0.290 3e-12
Q8RBX8203 Pyrrolidone-carboxylate p yes no 0.608 0.802 0.284 4e-11
A5CM68213 Pyrrolidone-carboxylate p yes no 0.608 0.765 0.271 5e-11
A4W870214 Pyrrolidone-carboxylate p yes no 0.611 0.766 0.275 5e-11
B7LKQ5214 Pyrrolidone-carboxylate p yes no 0.615 0.771 0.268 7e-11
Q7MG84212 Pyrrolidone-carboxylate p yes no 0.604 0.764 0.268 9e-11
O58321206 Pyrrolidone-carboxylate p yes no 0.600 0.781 0.295 9e-11
Q8D4N5212 Pyrrolidone-carboxylate p yes no 0.604 0.764 0.268 1e-10
Q87IL9212 Pyrrolidone-carboxylate p yes no 0.611 0.773 0.255 3e-10
>sp|O73944|PCP_PYRFU Pyrrolidone-carboxylate peptidase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=pcp PE=1 SV=1 Back     alignment and function desciption
 Score = 79.3 bits (194), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 86/188 (45%), Gaps = 22/188 (11%)

Query: 43  VTIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQ 102
           + + VTGF+ F G   NPTE I  +L           G+ +G   +      G V P+  
Sbjct: 1   MKVLVTGFEPFGGEKINPTERIAKDL----------DGIKIGDAQVF-----GRVLPVVF 45

Query: 103 TLQSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPI 162
                + EK  E       I +H G+  G +  +IE+ AVN    R PD  G K +  PI
Sbjct: 46  GKAKEVLEKTLEEIKPD--IAIHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEPI 103

Query: 163 FPADGEISRVRETSIPVEEITRTLAKKGYEVITSDDAGRFVCNYVYYHSLRFAEQNGTKS 222
            P          +++P+++I + L ++G     S+ AG ++CNYV Y SL  +   G   
Sbjct: 104 VPGA---PTAYFSTLPIKKIMKKLHERGIPAYISNSAGLYLCNYVMYLSLHHSATKGYPK 160

Query: 223 L--FVHVP 228
           +  F+HVP
Sbjct: 161 MSGFIHVP 168
Removes 5-oxoproline from various penultimate amino acid residues except L-proline.
Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (taxid: 186497)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 3
>sp|O07883|PCP_THELI Pyrrolidone-carboxylate peptidase OS=Thermococcus litoralis GN=pcp PE=1 SV=1 Back     alignment and function description
>sp|Q8RBX8|PCP1_THETN Pyrrolidone-carboxylate peptidase 1 OS=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=pcp1 PE=3 SV=1 Back     alignment and function description
>sp|A5CM68|PCP_CLAM3 Pyrrolidone-carboxylate peptidase OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=pcp PE=3 SV=1 Back     alignment and function description
>sp|A4W870|PCP_ENT38 Pyrrolidone-carboxylate peptidase OS=Enterobacter sp. (strain 638) GN=pcp PE=3 SV=1 Back     alignment and function description
>sp|B7LKQ5|PCP_ESCF3 Pyrrolidone-carboxylate peptidase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=pcp PE=3 SV=1 Back     alignment and function description
>sp|Q7MG84|PCP_VIBVY Pyrrolidone-carboxylate peptidase OS=Vibrio vulnificus (strain YJ016) GN=pcp PE=3 SV=1 Back     alignment and function description
>sp|O58321|PCP_PYRHO Pyrrolidone-carboxylate peptidase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=pcp PE=1 SV=1 Back     alignment and function description
>sp|Q8D4N5|PCP_VIBVU Pyrrolidone-carboxylate peptidase OS=Vibrio vulnificus (strain CMCP6) GN=pcp PE=3 SV=1 Back     alignment and function description
>sp|Q87IL9|PCP_VIBPA Pyrrolidone-carboxylate peptidase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=pcp PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query268
225450494219 PREDICTED: pyrrolidone-carboxylate pepti 0.794 0.972 0.892 1e-110
225450496219 PREDICTED: pyrrolidone-carboxylate pepti 0.794 0.972 0.892 1e-109
255542992219 pyroglutamyl-peptidase I, putative [Rici 0.794 0.972 0.873 1e-109
224124970219 predicted protein [Populus trichocarpa] 0.794 0.972 0.873 1e-109
224124574219 predicted protein [Populus trichocarpa] 0.794 0.972 0.859 1e-108
449435568220 PREDICTED: pyrrolidone-carboxylate pepti 0.794 0.968 0.807 1e-100
357441915226 Pyrrolidone-carboxylate peptidase [Medic 0.820 0.973 0.792 8e-99
217072010226 unknown [Medicago truncatula] 0.820 0.973 0.788 2e-98
356575307221 PREDICTED: pyrrolidone-carboxylate pepti 0.794 0.963 0.813 6e-98
351724685222 uncharacterized protein LOC100306599 [Gl 0.817 0.986 0.782 1e-97
>gi|225450494|ref|XP_002280759.1| PREDICTED: pyrrolidone-carboxylate peptidase isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 190/213 (89%), Positives = 201/213 (94%)

Query: 35  MGSEGPPAVTIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGH 94
           MGSEGPPAVTIHVTGFKKFHGVS+NPTETIVSNL+EYMKK G+PKGLILGSCNILETAG 
Sbjct: 1   MGSEGPPAVTIHVTGFKKFHGVSDNPTETIVSNLQEYMKKNGLPKGLILGSCNILETAGQ 60

Query: 95  GAVAPLYQTLQSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMG 154
           GA+ PLYQTLQSAI+ KDSES+NS+RIIWVHFGVNSGATRFAIE QAVNEATFRCPDEMG
Sbjct: 61  GALVPLYQTLQSAISGKDSESSNSKRIIWVHFGVNSGATRFAIEHQAVNEATFRCPDEMG 120

Query: 155 WKPQKVPIFPADGEISRVRETSIPVEEITRTLAKKGYEVITSDDAGRFVCNYVYYHSLRF 214
           WKPQKVPI PADG ISR RETS+PVEEIT+TL K GYEV+ SDDAGRFVCNYVYYHSLRF
Sbjct: 121 WKPQKVPIIPADGGISRTRETSLPVEEITKTLTKMGYEVMPSDDAGRFVCNYVYYHSLRF 180

Query: 215 AEQNGTKSLFVHVPLFLTIDEETQMQFAASLLE 247
           AEQNG +SLFVHVPLFLTIDEETQMQFAASLLE
Sbjct: 181 AEQNGIQSLFVHVPLFLTIDEETQMQFAASLLE 213

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225450496|ref|XP_002280794.1| PREDICTED: pyrrolidone-carboxylate peptidase isoform 4 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255542992|ref|XP_002512559.1| pyroglutamyl-peptidase I, putative [Ricinus communis] gi|223548520|gb|EEF50011.1| pyroglutamyl-peptidase I, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224124970|ref|XP_002319470.1| predicted protein [Populus trichocarpa] gi|118483857|gb|ABK93819.1| unknown [Populus trichocarpa] gi|222857846|gb|EEE95393.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224124574|ref|XP_002330057.1| predicted protein [Populus trichocarpa] gi|118487308|gb|ABK95482.1| unknown [Populus trichocarpa] gi|222871482|gb|EEF08613.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449435568|ref|XP_004135567.1| PREDICTED: pyrrolidone-carboxylate peptidase-like isoform 1 [Cucumis sativus] gi|449435570|ref|XP_004135568.1| PREDICTED: pyrrolidone-carboxylate peptidase-like isoform 2 [Cucumis sativus] gi|449508620|ref|XP_004163364.1| PREDICTED: pyrrolidone-carboxylate peptidase-like isoform 1 [Cucumis sativus] gi|449508623|ref|XP_004163365.1| PREDICTED: pyrrolidone-carboxylate peptidase-like isoform 2 [Cucumis sativus] Back     alignment and taxonomy information
>gi|357441915|ref|XP_003591235.1| Pyrrolidone-carboxylate peptidase [Medicago truncatula] gi|355480283|gb|AES61486.1| Pyrrolidone-carboxylate peptidase [Medicago truncatula] gi|388515769|gb|AFK45946.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|217072010|gb|ACJ84365.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|356575307|ref|XP_003555783.1| PREDICTED: pyrrolidone-carboxylate peptidase isoform 1 [Glycine max] gi|356575309|ref|XP_003555784.1| PREDICTED: pyrrolidone-carboxylate peptidase isoform 2 [Glycine max] gi|356575311|ref|XP_003555785.1| PREDICTED: pyrrolidone-carboxylate peptidase isoform 3 [Glycine max] Back     alignment and taxonomy information
>gi|351724685|ref|NP_001237322.1| uncharacterized protein LOC100306599 [Glycine max] gi|255629021|gb|ACU14855.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query268
TAIR|locus:2027615219 AT1G56700 [Arabidopsis thalian 0.791 0.968 0.732 3.4e-84
TAIR|locus:2028906217 AT1G23440 [Arabidopsis thalian 0.787 0.972 0.661 1.7e-75
DICTYBASE|DDB_G0267498207 pgpep "pyroglutamyl-peptidase 0.738 0.956 0.374 1.4e-30
UNIPROTKB|F1MX35188 PGPEP1L "Uncharacterized prote 0.440 0.627 0.340 1.8e-10
UNIPROTKB|F1SRY2192 PGPEP1L "Uncharacterized prote 0.365 0.510 0.352 6.8e-10
TIGR_CMR|BA_3090215 BA_3090 "pyrrolidone-carboxyla 0.376 0.469 0.308 7.4e-08
UNIPROTKB|F1PRT2196 PGPEP1L "Uncharacterized prote 0.365 0.5 0.323 7.8e-08
UNIPROTKB|A6NFU8196 PGPEP1L "Pyroglutamyl-peptidas 0.365 0.5 0.323 1.2e-07
MGI|MGI:1925694130 Pgpep1l "pyroglutamyl-peptidas 0.350 0.723 0.336 1.6e-07
UNIPROTKB|E2QUT4228 PGPEP1L "Uncharacterized prote 0.365 0.429 0.323 3.1e-07
TAIR|locus:2027615 AT1G56700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 843 (301.8 bits), Expect = 3.4e-84, P = 3.4e-84
 Identities = 156/213 (73%), Positives = 182/213 (85%)

Query:    35 MGSEGPPAVTIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGH 94
             MGSEGP  VTIH+TGFKKFHGV+ENPTE + +NL+EY+ K  + K + LGSC +LETAG 
Sbjct:     1 MGSEGPTGVTIHITGFKKFHGVAENPTEKMANNLKEYLAKNCVSKDVNLGSCTVLETAGQ 60

Query:    95 GAVAPLYQTLQSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMG 154
             GA+A LYQ LQSA+N K+SES   + I WVHFGVNSGAT+FAIEQQAVNEATFRCPDE+G
Sbjct:    61 GALASLYQLLQSAVNTKESESLTGKTI-WVHFGVNSGATKFAIEQQAVNEATFRCPDELG 119

Query:   155 WKPQKVPIFPADGEISRVRETSIPVEEITRTLAKKGYEVITSDDAGRFVCNYVYYHSLRF 214
             WKPQ +PI P+DG IS VR+T++PVEEIT+ L K G+EVITSDDAGRFVCNYVYYHSLRF
Sbjct:   120 WKPQNLPIVPSDGPISTVRKTNLPVEEITKALEKNGFEVITSDDAGRFVCNYVYYHSLRF 179

Query:   215 AEQNGTKSLFVHVPLFLTIDEETQMQFAASLLE 247
             AEQN T+SLFVHVPLF+ +DEETQM+F  SLLE
Sbjct:   180 AEQNKTRSLFVHVPLFVAVDEETQMRFTVSLLE 212
GO:0005737 "cytoplasm" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA;ISS
TAIR|locus:2028906 AT1G23440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0267498 pgpep "pyroglutamyl-peptidase I" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|F1MX35 PGPEP1L "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1SRY2 PGPEP1L "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
TIGR_CMR|BA_3090 BA_3090 "pyrrolidone-carboxylate peptidase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|F1PRT2 PGPEP1L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|A6NFU8 PGPEP1L "Pyroglutamyl-peptidase 1-like protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1925694 Pgpep1l "pyroglutamyl-peptidase I-like" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2QUT4 PGPEP1L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.190.691
3rd Layer3.4.19.30.737

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00022549001
SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (219 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query268
cd00501194 cd00501, Peptidase_C15, Pyroglutamyl peptidase (PG 2e-49
PRK13194208 PRK13194, PRK13194, pyrrolidone-carboxylate peptid 1e-17
COG2039207 COG2039, Pcp, Pyrrolidone-carboxylate peptidase (N 2e-17
pfam01470203 pfam01470, Peptidase_C15, Pyroglutamyl peptidase 1e-16
PRK13193209 PRK13193, PRK13193, pyrrolidone-carboxylate peptid 5e-15
PRK13197215 PRK13197, PRK13197, pyrrolidone-carboxylate peptid 6e-15
TIGR00504212 TIGR00504, pyro_pdase, pyroglutamyl-peptidase I 2e-13
PRK13196211 PRK13196, PRK13196, pyrrolidone-carboxylate peptid 7e-08
PRK13195222 PRK13195, PRK13195, pyrrolidone-carboxylate peptid 0.002
>gnl|CDD|238279 cd00501, Peptidase_C15, Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins Back     alignment and domain information 
 Score =  160 bits (408), Expect = 2e-49
 Identities = 57/214 (26%), Positives = 86/214 (40%), Gaps = 33/214 (15%)

Query: 43  VTIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNI----LETAGHGAVA 98
             + VTGF  F G   NP+   V  L            LILG   +    L      AV 
Sbjct: 1   KKVLVTGFGPFGGEPVNPSWEAVKEL----------PKLILGGAEVVGLELPVVFQKAVE 50

Query: 99  PLYQTLQSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQ 158
            L + ++             +  + +H G+  G +   IE+ A+N    R PD  G +P 
Sbjct: 51  VLPELIEEH-----------KPDLVIHVGLAGGRSTITIERVAINIDDARIPDNEGNQPI 99

Query: 159 KVPIFPADGEISRVRETSIPVEEITRTLAKKGYEVITSDDAGRFVCNYVYYHSLRFAEQN 218
             PI P  G       +++PV+ I + L + G     S+DAG ++CN+VYY SL  +   
Sbjct: 100 DEPIVP-GGP--AAYFSTLPVKAIVKALREAGIPARVSNDAGTYLCNHVYYGSLHESATR 156

Query: 219 G--TKSLFVHVPLF---LTIDEETQMQFAASLLE 247
           G   ++ F+HVP     +       M     L  
Sbjct: 157 GPFIRAGFIHVPYSPEQVADKGAPSMSLETILRA 190

The N-terminal pGlu protects these proteins from proteolysis by other proteases until the pGlu is removed by a PGP. PGPs are cysteine proteases with a Cys-His-Glu/Asp catalytic triad. Type I PGPs are found in a wide variety of prokaryotes and eukaryotes. It is not clear whether the functional form is a monomer, a homodimer, or a homotetramer. Length = 194
>gnl|CDD|183887 PRK13194, PRK13194, pyrrolidone-carboxylate peptidase; Provisional Back     alignment and domain information
>gnl|CDD|224950 COG2039, Pcp, Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|201814 pfam01470, Peptidase_C15, Pyroglutamyl peptidase Back     alignment and domain information
>gnl|CDD|237298 PRK13193, PRK13193, pyrrolidone-carboxylate peptidase; Provisional Back     alignment and domain information
>gnl|CDD|237299 PRK13197, PRK13197, pyrrolidone-carboxylate peptidase; Provisional Back     alignment and domain information
>gnl|CDD|129595 TIGR00504, pyro_pdase, pyroglutamyl-peptidase I Back     alignment and domain information
>gnl|CDD|171895 PRK13196, PRK13196, pyrrolidone-carboxylate peptidase; Provisional Back     alignment and domain information
>gnl|CDD|171894 PRK13195, PRK13195, pyrrolidone-carboxylate peptidase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 268
PF01470202 Peptidase_C15: Pyroglutamyl peptidase This is fami 100.0
PRK13194208 pyrrolidone-carboxylate peptidase; Provisional 100.0
PRK13195222 pyrrolidone-carboxylate peptidase; Provisional 100.0
PRK13196211 pyrrolidone-carboxylate peptidase; Provisional 100.0
PRK13193209 pyrrolidone-carboxylate peptidase; Provisional 100.0
PRK13197215 pyrrolidone-carboxylate peptidase; Provisional 100.0
COG2039207 Pcp Pyrrolidone-carboxylate peptidase (N-terminal 100.0
TIGR00504212 pyro_pdase pyroglutamyl-peptidase I. Alternate nam 100.0
cd00501194 Peptidase_C15 Pyroglutamyl peptidase (PGP) type I, 100.0
KOG4755213 consensus Predicted pyroglutamyl peptidase [Posttr 99.91
PF06162166 DUF976: Caenorhabditis elegans protein of unknown 99.68
>PF01470 Peptidase_C15: Pyroglutamyl peptidase This is family C15 in the peptidase classification Back     alignment and domain information 
Probab=100.00  E-value=1e-51  Score=362.71  Aligned_cols=189  Identities=33%  Similarity=0.528  Sum_probs=131.4

Q ss_pred             eEEEEEcccCCCCCCCCchHHHHHHHHHHHHhcCCCCceeeceeeeeecccCCcchhHHHHHHHHhccccccccCCCccE
Q 024368           43 VTIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRII  122 (268)
Q Consensus        43 ~~VLVTGFgPF~~~~~NPS~~iv~~L~~~~~~~g~~~~~~i~~~~vlpvs~~~~~~~~y~~v~~~v~~~~~~~~~~~pdl  122 (268)
                      ++|||||||||+++++||||+++++|++..     ..+++| ...++||+|+.+.+.    +.+++.       +.+||+
T Consensus         1 m~ILvTGFgpF~~~~~NpS~~~v~~L~~~~-----~~~~~v-~~~~lPV~~~~~~~~----l~~~l~-------~~~Pdl   63 (202)
T PF01470_consen    1 MRILVTGFGPFGGVPVNPSWELVKRLPGEL-----IGGAEV-HTRELPVSYEKAFEA----LEELLE-------EHQPDL   63 (202)
T ss_dssp             EEEEEEEE-S-TT-SS-HHHHHHHHHTTSE-----ETTEEE-EEEEE-SSHHHHHHH----HHHHHH-------HH--SE
T ss_pred             CEEEEecccCCCCCCCChHHHHHHHcCCCc-----CCCceE-EEEEecCchHhHHHH----HHHHHH-------hcCCcE
Confidence            389999999999999999999999997621     135565 346788887544333    333332       368999


Q ss_pred             EEEeeecCCCceeeeeEeeecCCCCCCCCCCCCCCCCccccCCCCCcCcccccCCcHHHHHHHHHhCCCceEEeCCCCcc
Q 024368          123 WVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVRETSIPVEEITRTLAKKGYEVITSDDAGRF  202 (268)
Q Consensus       123 vIHlGva~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~I~~~~gp~~~~l~T~Lpv~~l~~~l~~~gi~v~vS~dAG~Y  202 (268)
                      |||+|++++++.|+||++|+|.+++++||++|++|.+++|.+ +||.  .++|+||+++|+++|+++|+|+++|+|||+|
T Consensus        64 VIhlGva~~~~~i~lEr~A~N~~d~~~pD~~G~~p~~~~i~~-~gp~--~~~t~lp~~~l~~~l~~~gip~~~S~dAG~Y  140 (202)
T PF01470_consen   64 VIHLGVAGGRKSIRLERVAINWADFRIPDNDGRQPKDEPIVP-DGPE--AYFTTLPVRALVEALREAGIPVEISNDAGRY  140 (202)
T ss_dssp             EEEEEE-TT-SSEEEESEEES-BE-SS--TTS---ESB-SST-TS-S--EEE-BS-HHHHHHHHHHTT--EEEES---SS
T ss_pred             EEEEeecCCcchhhHHHHhhccCCCcCCcccCCccCCccccC-CCcc--ceecCCCHHHHHHHHHHcCCCCcccCChhhh
Confidence            999999999999999999999999999999999999999987 5775  4679999999999999999999999999999


Q ss_pred             cchHHHHHHHHhhhhc--CCceEEEecCCCCCC----------ChHHHHHHHHHHHHHHHh
Q 024368          203 VCNYVYYHSLRFAEQN--GTKSLFVHVPLFLTI----------DEETQMQFAASLLEFASQ  251 (268)
Q Consensus       203 LCNyiyY~sL~~~~~~--~~~~~FVHVP~~~~~----------~~e~~~~~v~~lI~~la~  251 (268)
                      ||||+||+||++.+++  +.+++|||||++++.          +-+++.+.+...|+++++
T Consensus       141 lCN~~~Y~sl~~~~~~~~~~~~~FvHvP~~~~~~~~~~~~~s~~l~~~~~a~~~~~~~~~~  201 (202)
T PF01470_consen  141 LCNYIYYRSLHHAERRGPPIPAGFVHVPPLPEQVAEKPGAPSMSLETMVRAVRAAIEAIVD  201 (202)
T ss_dssp             HHHHHHHHHHHHHHHHSTTSEEEEEEE-B-GGGHTTCTTC-B--HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCCCCceeEEeeCCchHhhccCCCCCCCCHHHHHHHHHHHHHHHhh
Confidence            9999999999998653  578999999987553          335677778888887765

; InterPro: IPR000816 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C15 (pyroglutamyl peptidase I, clan CF). The type example being pyroglutamyl peptidase I of Bacillus amyloliquefaciens. Pyroglutamyl/pyrrolidone carboxyl peptidase (Pcp or PYRase) is an exopeptidase that hydrolytically removes the pGlu from pGlu-peptides or pGlu-proteins [, ]. PYRase has been found in prokaryotes and eukaryotes where at least two different classes have been characterised: the first containing bacterial and animal type I PYRases, and the second containing animal type II and serum PYRases. Type I and bacterial PYRases are soluble enzymes, while type II PYRases are membrane-bound. The primary application of PYRase has been its utilisation for protein or peptide sequencing, and bacterial diagnosis []. The conserved residues Cys-144 and His-168 have been identified by inhibition and mutagenesis studies [, ].; GO: 0006508 proteolysis; PDB: 1A2Z_A 1IU8_A 3RNZ_A 3RO0_D 1AUG_D 2EBJ_A 3LAC_A 1X12_B 1Z8X_B 1X10_C ....
>PRK13194 pyrrolidone-carboxylate peptidase; Provisional Back     alignment and domain information
>PRK13195 pyrrolidone-carboxylate peptidase; Provisional Back     alignment and domain information
>PRK13196 pyrrolidone-carboxylate peptidase; Provisional Back     alignment and domain information
>PRK13193 pyrrolidone-carboxylate peptidase; Provisional Back     alignment and domain information
>PRK13197 pyrrolidone-carboxylate peptidase; Provisional Back     alignment and domain information
>COG2039 Pcp Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00504 pyro_pdase pyroglutamyl-peptidase I Back     alignment and domain information
>cd00501 Peptidase_C15 Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins Back     alignment and domain information
>KOG4755 consensus Predicted pyroglutamyl peptidase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF06162 DUF976: Caenorhabditis elegans protein of unknown function (DUF976); InterPro: IPR010381 This family consists of proteins of unknown function found in Caenorhabditis species Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query268
1iof_A208 X-Ray Crystalline Structures Of Pyrrolidone Carboxy 2e-15
2df5_A213 Crystal Structure Of Pf-Pcp(1-204)-C Length = 213 2e-15
1z8w_A208 Structure Of Mutant Pyrrolidone Carboxyl Peptidase 2e-14
1z8x_A208 Structure Of Mutant Pyrrolidone Carboxyl Peptidase 3e-14
1x12_A208 Structure Of Mutant Pyrrolidone Carboxyl Peptidase 3e-14
2eo8_A208 Crystal Structure Of A Mutant Pyrrolidone Carboxyl 3e-14
1x10_A208 Structure Of Mutant Pyrrolidone Carboxyl Peptidase 3e-14
1z8t_A208 Structure Of Mutant Pyrrolidone Carboxyl Peptidase 3e-14
1ioi_A208 X-Ray Crystalline Structures Of Pyrrolidone Carboxy 3e-14
1a2z_A220 Pyrrolidone Carboxyl Peptidase From Thermococcus Li 2e-13
1iu8_A206 The X-Ray Crystal Structure Of Pyrrolidone-Carboxyl 7e-12
4hps_A228 Crystal Structure Of A Pyrrolidone-Carboxylate Pept 1e-08
4gxh_A216 Crystal Structure Of A Pyrrolidone-Carboxylate Pept 5e-08
2ebj_A192 Crystal Structure Of Pyrrolidone Carboxyl Peptidase 3e-06
3lac_A215 Crystal Structure Of Bacillus Anthracis Pyrrolidone 4e-06
3giu_A215 1.25 Angstrom Crystal Structure Of Pyrrolidone-Carb 3e-05
1aug_A215 Crystal Structure Of The Pyroglutamyl Peptidase I F 9e-05
3rnz_A223 Crystal Structure Of Bacillus Amyloliquefaciens Pyr 2e-04
>pdb|1IOF|A Chain A, X-Ray Crystalline Structures Of Pyrrolidone Carboxyl Peptidase From A Hyperthermophile, Pyrococcus Furiosus, And Its Cys-Free Mutant Length = 208 Back     alignment and structure 
Iteration: 1

 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 86/188 (45%), Gaps = 22/188 (11%)
Query: 43  VTIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQ 102
           + + VTGF+ F G   NPTE I  +L           G+ +G   +      G V P+  
Sbjct: 1   MKVLVTGFEPFGGEKINPTERIAKDL----------DGIKIGDAQVF-----GRVLPVVF 45
Query: 103 TLQSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPI 162
                + EK  E       I +H G+  G +  +IE+ AVN    R PD  G K +  PI
Sbjct: 46  GKAKEVLEKTLEEIKPD--IAIHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEPI 103
Query: 163 FPADGEISRVRETSIPVEEITRTLAKKGYEVITSDDAGRFVCNYVYYHSLRFAEQNGTKS 222
            P          +++P+++I + L ++G     S+ AG ++CNYV Y SL  +   G   
Sbjct: 104 VPGA---PTAYFSTLPIKKIMKKLHERGIPAYISNSAGLYLCNYVMYLSLHHSATKGYPK 160
Query: 223 L--FVHVP 228
           +  F+HVP
Sbjct: 161 MSGFIHVP 168
>pdb|2DF5|A Chain A, Crystal Structure Of Pf-Pcp(1-204)-C Length = 213 Back     alignment and structure
>pdb|1Z8W|A Chain A, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192i) From A Hyperthermophile, Pyrococcus Furiosus Length = 208 Back     alignment and structure
>pdb|1Z8X|A Chain A, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192v) From A Hyperthermophile, Pyrococcus Furiosus Length = 208 Back     alignment and structure
>pdb|1X12|A Chain A, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192d) From A Hyperthermophile, Pyrococcus Furiosus Length = 208 Back     alignment and structure
>pdb|2EO8|A Chain A, Crystal Structure Of A Mutant Pyrrolidone Carboxyl Peptidase (A199p) From P. Furiosus Length = 208 Back     alignment and structure
>pdb|1X10|A Chain A, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192a) From A Hyperthermophile, Pyrococcus Furiosus Length = 208 Back     alignment and structure
>pdb|1Z8T|A Chain A, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192q) From A Hyperthermophile, Pyrococcus Furiosus Length = 208 Back     alignment and structure
>pdb|1IOI|A Chain A, X-Ray Crystalline Structures Of Pyrrolidone Carboxyl Peptidase From A Hyperthermophile, Pyrococcus Furiosus, And Its Cys-Free Mutant Length = 208 Back     alignment and structure
>pdb|1A2Z|A Chain A, Pyrrolidone Carboxyl Peptidase From Thermococcus Litoralis Length = 220 Back     alignment and structure
>pdb|1IU8|A Chain A, The X-Ray Crystal Structure Of Pyrrolidone-Carboxylate Peptidase From Hyperthermophilic Archaeon Pyrococcus Horikoshii Length = 206 Back     alignment and structure
>pdb|4HPS|A Chain A, Crystal Structure Of A Pyrrolidone-Carboxylate Peptidase 1 (Target Id Nysgrc-012831) From Xenorhabdus Bovienii Ss-2004 In Space Group P21 Length = 228 Back     alignment and structure
>pdb|4GXH|A Chain A, Crystal Structure Of A Pyrrolidone-Carboxylate Peptidase 1 (Target Id Nysgrc-012831) From Xenorhabdus Bovienii Ss-2004 Length = 216 Back     alignment and structure
>pdb|2EBJ|A Chain A, Crystal Structure Of Pyrrolidone Carboxyl Peptidase From Thermus Thermophilus Length = 192 Back     alignment and structure
>pdb|3LAC|A Chain A, Crystal Structure Of Bacillus Anthracis Pyrrolidone-Carboxylate Peptidase, Pcp Length = 215 Back     alignment and structure
>pdb|3GIU|A Chain A, 1.25 Angstrom Crystal Structure Of Pyrrolidone-Carboxylate Peptidase (Pcp) From Staphylococcus Aureus Length = 215 Back     alignment and structure
>pdb|1AUG|A Chain A, Crystal Structure Of The Pyroglutamyl Peptidase I From Bacillus Amyloliquefaciens Length = 215 Back     alignment and structure
>pdb|3RNZ|A Chain A, Crystal Structure Of Bacillus Amyloliquefaciens Pyroglutamyl Peptidase I Length = 223 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query268
3giu_A215 Pyrrolidone-carboxylate peptidase; IDP00836, hydro 2e-38
1iu8_A206 Pyrrolidone-carboxylate peptidase; hydrolase, thio 5e-37
3ro0_A223 Pyrrolidone-carboxylate peptidase; hydrolase-hydro 6e-37
1a2z_A220 Pyrrolidone carboxyl peptidase; N-pyroglutamate hy 2e-36
2ebj_A192 Pyrrolidone carboxyl peptidase; TTHA08 degradation 1e-35
1x10_A208 Pyrrolidone-carboxylate peptidase; stability of pr 6e-35
3lac_A215 Pyrrolidone-carboxylate peptidase; alpha beta clas 2e-34
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-07
>3giu_A Pyrrolidone-carboxylate peptidase; IDP00836, hydrolase, PROT thiol protease, structural genomics; HET: MSE PG4; 1.25A {Staphylococcus aureus subsp} Length = 215 Back     alignment and structure
 Score =  133 bits (334), Expect = 2e-38
 Identities = 43/189 (22%), Positives = 76/189 (40%), Gaps = 23/189 (12%)

Query: 42  AVTIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLY 101
           A+ I VTGF  F   + NP+   V+ L + +    +           L T+       + 
Sbjct: 3   AMHILVTGFAPFDNQNINPSWEAVTQLEDIIGTHTID-------KLKLPTSFKKVDNIIN 55

Query: 102 QTLQSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVP 161
           +TL S           +   + +  G   G      E+ A+N    R PD   ++P    
Sbjct: 56  KTLAS-----------NHYDVVLAIGQAGGRNAITPERVAINIDDARIPDNDDFQPIDQA 104

Query: 162 IFPADGEISRVRETSIPVEEITRTLAKKGYEVITSDDAGRFVCNYVYYHSLRFAEQNG-- 219
           I            +++PV+ +T+++  +G     S+ AG FVCN+  YH     +++   
Sbjct: 105 IHLDGAPA---YFSNLPVKAMTQSIINQGLPGALSNSAGTFVCNHTLYHLGYLQDKHYPH 161

Query: 220 TKSLFVHVP 228
            +  F+HVP
Sbjct: 162 LRFGFIHVP 170
>1iu8_A Pyrrolidone-carboxylate peptidase; hydrolase, thiol protease, complete proteome; 1.60A {Pyrococcus horikoshii} SCOP: c.56.4.1 Length = 206 Back     alignment and structure
>3ro0_A Pyrrolidone-carboxylate peptidase; hydrolase-hydrolase inhibitor complex; HET: TPT; 1.50A {Bacillus amyloliquefaciens} PDB: 3rnz_A* 1aug_A Length = 223 Back     alignment and structure
>1a2z_A Pyrrolidone carboxyl peptidase; N-pyroglutamate hydrolysis; 1.73A {Thermococcus litoralis} SCOP: c.56.4.1 Length = 220 Back     alignment and structure
>2ebj_A Pyrrolidone carboxyl peptidase; TTHA08 degradation of proteins and peptides, structural genomics; 1.90A {Thermus thermophilus} Length = 192 Back     alignment and structure
>1x10_A Pyrrolidone-carboxylate peptidase; stability of protein, hydrolase; 2.00A {Pyrococcus furiosus} PDB: 1z8t_A 1z8x_A 1ioi_A 1x12_A 1z8w_A 2eo8_A 1iof_A 2df5_A Length = 208 Back     alignment and structure
>3lac_A Pyrrolidone-carboxylate peptidase; alpha beta class, three layer sandwich, hydrolase, protease, thiol protease, structural genomics; 2.00A {Bacillus anthracis} Length = 215 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query268
3lac_A215 Pyrrolidone-carboxylate peptidase; alpha beta clas 100.0
3ro0_A223 Pyrrolidone-carboxylate peptidase; hydrolase-hydro 100.0
3giu_A215 Pyrrolidone-carboxylate peptidase; IDP00836, hydro 100.0
4hps_A228 Pyrrolidone-carboxylate peptidase; structural geno 100.0
4gxh_A216 Pyrrolidone-carboxylate peptidase; structural geno 100.0
1a2z_A220 Pyrrolidone carboxyl peptidase; N-pyroglutamate hy 100.0
1iu8_A206 Pyrrolidone-carboxylate peptidase; hydrolase, thio 100.0
1x10_A208 Pyrrolidone-carboxylate peptidase; stability of pr 100.0
2ebj_A192 Pyrrolidone carboxyl peptidase; TTHA08 degradation 100.0
>3lac_A Pyrrolidone-carboxylate peptidase; alpha beta class, three layer sandwich, hydrolase, protease, thiol protease, structural genomics; 2.00A {Bacillus anthracis} Back     alignment and structure
Probab=100.00  E-value=1e-51  Score=364.58  Aligned_cols=189  Identities=24%  Similarity=0.383  Sum_probs=161.4

Q ss_pred             eEEEEEcccCCCCCCCCchHHHHHHHHHHHHhcCCCCceeeceeeeeecccCCcchhHHHHHHHHhccccccccCCCccE
Q 024368           43 VTIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRII  122 (268)
Q Consensus        43 ~~VLVTGFgPF~~~~~NPS~~iv~~L~~~~~~~g~~~~~~i~~~~vlpvs~~~~~~~~y~~v~~~v~~~~~~~~~~~pdl  122 (268)
                      .+|||||||||+++++||||+++++|++.     +...++|. ...+||+|..+...+.+.++           .++||+
T Consensus         2 ~~VLvTGF~PF~~~~~NPS~~~v~~L~~~-----i~~~~~i~-~~~lPv~y~~~~~~l~~~~~-----------~~~Pd~   64 (215)
T 3lac_A            2 KTVLLTGFDPFGGESINPAWEVAKSLHEK-----TIGEYKII-SKQVPTVFHKSISVLKEYIE-----------ELAPEF   64 (215)
T ss_dssp             EEEEEEEECCCTTCSCCHHHHHHHTTTTC-----EETTEEEE-EEEECSSTTHHHHHHHHHHH-----------HHCCSE
T ss_pred             CEEEEEecCCCCCCCCChHHHHHHHhccc-----cCCCcEEE-EEEEeeEhHHHHHHHHHHHH-----------hhCCCe
Confidence            48999999999999999999999999862     22233553 45689988766544433333           369999


Q ss_pred             EEEeeecCCCceeeeeEeeecCCCCCCCCCCCCCCCCccccCCCCCcCcccccCCcHHHHHHHHHhCCCceEEeCCCCcc
Q 024368          123 WVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVRETSIPVEEITRTLAKKGYEVITSDDAGRF  202 (268)
Q Consensus       123 vIHlGva~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~I~~~~gp~~~~l~T~Lpv~~l~~~l~~~gi~v~vS~dAG~Y  202 (268)
                      |||+|++++|+.|++||+|+|..+|++|||+|++|.+++|.+ +||.  .++|+||+++|++++++.|+|+++|+|||+|
T Consensus        65 VihvG~aggr~~i~lEr~A~N~~d~~~pDn~G~~P~~~~i~~-~Gp~--~~~s~Lpv~~~v~~l~~~gipa~vS~dAG~y  141 (215)
T 3lac_A           65 IICIGQAGGRPDITIERVAINIDDARIADNEGNQPVDVPVVE-EGPA--AYWSTLPMKAIVKKLQEEGIPASVSQTAGTF  141 (215)
T ss_dssp             EEEEEECTTCSSEEEECEEESCBCCSSCCTTSCCCSSBCSST-TSCS--EEECCSCHHHHHHHHHHTTCCEEEESCCCSS
T ss_pred             EEEeccCCCCceEEEEEEEeccCCCcCCCcCCCCCCCCcCcC-CCCc--eeecCCCHHHHHHHHHhCCCcEEEcCCCCcc
Confidence            999999999999999999999889999999999999999987 6775  4679999999999999999999999999999


Q ss_pred             cchHHHHHHHHhhhhc--CCceEEEecCCCC----------CCChHHHHHHHHHHHHHHHh
Q 024368          203 VCNYVYYHSLRFAEQN--GTKSLFVHVPLFL----------TIDEETQMQFAASLLEFASQ  251 (268)
Q Consensus       203 LCNyiyY~sL~~~~~~--~~~~~FVHVP~~~----------~~~~e~~~~~v~~lI~~la~  251 (268)
                      ||||+||+||++.+++  +.+++|||||+++          .++.|++.+.+..+|+++++
T Consensus       142 vCN~i~Y~sL~~~~~~~~~~~~gFIHVP~~~~q~~~~~~~p~m~~~~~~~al~~~i~~~~~  202 (215)
T 3lac_A          142 VCNHLFYGLMHELEKHDTKMKGGFIHIPFLPEQASNYPGQPSMSLSTIRKGIELAVEVTTT  202 (215)
T ss_dssp             HHHHHHHHHHHHHGGGTTSSEEEEEEECCCHHHHTTSTTCCCCCHHHHHHHHHHHHHHHTT
T ss_pred             ccHHHHHHHHHHHHhcCCCceEEEEEeCCChHHhccCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence            9999999999998643  5789999999985          35677888888888998877
>3ro0_A Pyrrolidone-carboxylate peptidase; hydrolase-hydrolase inhibitor complex; HET: TPT; 1.50A {Bacillus amyloliquefaciens} SCOP: c.56.4.1 PDB: 3rnz_A* 1aug_A Back     alignment and structure
>3giu_A Pyrrolidone-carboxylate peptidase; IDP00836, hydrolase, PROT thiol protease, structural genomics; HET: MSE PG4; 1.25A {Staphylococcus aureus subsp} SCOP: c.56.4.0 Back     alignment and structure
>4hps_A Pyrrolidone-carboxylate peptidase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, hydrolase; 1.55A {Xenorhabdus bovienii} PDB: 4gxh_A Back     alignment and structure
>4gxh_A Pyrrolidone-carboxylate peptidase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, hydrolase; 2.70A {Xenorhabdus bovienii} Back     alignment and structure
>1a2z_A Pyrrolidone carboxyl peptidase; N-pyroglutamate hydrolysis; 1.73A {Thermococcus litoralis} SCOP: c.56.4.1 Back     alignment and structure
>1iu8_A Pyrrolidone-carboxylate peptidase; hydrolase, thiol protease, complete proteome; 1.60A {Pyrococcus horikoshii} SCOP: c.56.4.1 Back     alignment and structure
>1x10_A Pyrrolidone-carboxylate peptidase; stability of protein, hydrolase; 2.00A {Pyrococcus furiosus} PDB: 1z8t_A 1z8x_A 1ioi_A 1x12_A 1z8w_A 2eo8_A 1iof_A 2df5_A Back     alignment and structure
>2ebj_A Pyrrolidone carboxyl peptidase; TTHA08 degradation of proteins and peptides, structural genomics; 1.90A {Thermus thermophilus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 268
d1iofa_208 c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyro 1e-42
d1auga_210 c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyro 1e-40
d1a2za_220 c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyro 7e-39
d1iu8a_206 c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyro 7e-38
>d1iofa_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 208 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
family: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
domain: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score =  142 bits (360), Expect = 1e-42
 Identities = 53/188 (28%), Positives = 83/188 (44%), Gaps = 22/188 (11%)

Query: 45  IHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTL 104
           + VTGF+ F G   NPTE I  +L           G+ +G   +             + L
Sbjct: 3   VLVTGFEPFGGEKINPTERIAKDL----------DGIKIGDAQVFGRVLPVVFGKAKEVL 52

Query: 105 QSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFP 164
           +  + E        +  I +H G+  G +  +IE+ AVN    R PD  G K +  PI P
Sbjct: 53  EKTLEE-------IKPDIAIHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEPIVP 105

Query: 165 ADGEISRVRETSIPVEEITRTLAKKGYEVITSDDAGRFVCNYVYYHSLRFAEQNG--TKS 222
                     +++P+++I + L ++G     S+ AG ++CNYV Y SL  +   G    S
Sbjct: 106 GAPT---AYFSTLPIKKIMKKLHERGIPAYISNSAGLYLCNYVMYLSLHHSATKGYPKMS 162

Query: 223 LFVHVPLF 230
            F+HVP  
Sbjct: 163 GFIHVPYI 170
>d1auga_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Bacillus amyloliquefaciens [TaxId: 1390]} Length = 210 Back     information, alignment and structure
>d1a2za_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 220 Back     information, alignment and structure
>d1iu8a_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 206 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query268
d1a2za_220 Pyrrolidone carboxyl peptidase (pyroglutamate amin 100.0
d1iofa_208 Pyrrolidone carboxyl peptidase (pyroglutamate amin 100.0
d1iu8a_206 Pyrrolidone carboxyl peptidase (pyroglutamate amin 100.0
d1auga_210 Pyrrolidone carboxyl peptidase (pyroglutamate amin 100.0
>d1a2za_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Thermococcus litoralis [TaxId: 2265]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
family: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
domain: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=100.00  E-value=1.7e-49  Score=349.49  Aligned_cols=189  Identities=26%  Similarity=0.432  Sum_probs=158.7

Q ss_pred             eEEEEEcccCCCCCCCCchHHHHHHHHHHHHhcCCCCceeeceeeeeecccCCcchhHHHHHHHHhccccccccCCCccE
Q 024368           43 VTIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRII  122 (268)
Q Consensus        43 ~~VLVTGFgPF~~~~~NPS~~iv~~L~~~~~~~g~~~~~~i~~~~vlpvs~~~~~~~~y~~v~~~v~~~~~~~~~~~pdl  122 (268)
                      .||||||||||++++.||||+++++|++.    ++ .+.+| ...+|||+|.++...+.+.++           ..+||+
T Consensus         2 kkILvTGF~PF~~~~~NPS~~iv~~L~~~----~~-~~~~i-~~~~LPV~~~~~~~~l~~~~~-----------~~~pd~   64 (220)
T d1a2za_           2 KKVLITGFEPFGGDSKNPTEQIAKYFDRK----QI-GNAMV-YGRVLPVSVKRATIELKRYLE-----------EIKPEI   64 (220)
T ss_dssp             EEEEEEEECCCTTCSCCHHHHHHHHHTTC----EE-TTEEE-EEEEECSCHHHHHHHHHHHHH-----------HHCCSE
T ss_pred             CEEEEEecCCCCCCCCChHHHHHHHhccc----CC-CCceE-EEEEcceeHHHHHHHHHHHHH-----------hCCceE
Confidence            38999999999999999999999999752    22 34555 346789987665444433333           368999


Q ss_pred             EEEeeecCCCceeeeeEeeecCCCCCCCCCCCCCCCCccccCCCCCcCcccccCCcHHHHHHHHHhCCCceEEeCCCCcc
Q 024368          123 WVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVRETSIPVEEITRTLAKKGYEVITSDDAGRF  202 (268)
Q Consensus       123 vIHlGva~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~I~~~~gp~~~~l~T~Lpv~~l~~~l~~~gi~v~vS~dAG~Y  202 (268)
                      |||+|++++++.|+|||+|+|.+++++|||+|++|.+++|.. +||.  .++|+||+++|++++++.|+|+++|+|||+|
T Consensus        65 vi~~G~a~~~~~i~lE~~A~N~~~~~~pDn~G~~p~~~~i~~-~gp~--~~~ttlp~~~i~~~l~~~gi~~~iS~dAG~Y  141 (220)
T d1a2za_          65 VINLGLAPTYSNITVERIAVNIIDARIPDNDGYQPIDEKIEE-DAPL--AYMATLPVRAITKTLRDNGIPATISYSAGTY  141 (220)
T ss_dssp             EEEEEECTTCSSEEEECEEESCBCCSSCCTTSCCCSSBCSCT-TSCS--EEECCSCHHHHHHHHHHTTCCEEEESCCCSS
T ss_pred             EEEEeecCCCceeEEEEEEEeCCCCccccccCCccCCCCccC-CCCc--eeecCCCHHHHHHHHHhcCCCeEEcCCHHHh
Confidence            999999999999999999999999999999999999999986 6775  4679999999999999999999999999999


Q ss_pred             cchHHHHHHHHhhhhc--CCceEEEecCCCCC---------------CChHHHHHHHHHHHHHHHh
Q 024368          203 VCNYVYYHSLRFAEQN--GTKSLFVHVPLFLT---------------IDEETQMQFAASLLEFASQ  251 (268)
Q Consensus       203 LCNyiyY~sL~~~~~~--~~~~~FVHVP~~~~---------------~~~e~~~~~v~~lI~~la~  251 (268)
                      ||||+||+||++.++.  ++++||||||.+++               ++-+++.+.+...|+++++
T Consensus       142 lCN~~~Y~sl~~~~~~~~~~~~gFIHvP~~~~q~~~~~~~~~~~~psm~l~~~~~a~~~~i~~~~~  207 (220)
T d1a2za_         142 LCNYVMFKTLHFSKIEGYPLKAGFIHVPYTPDQVVNKFFLLGKNTPSMCLEAEIKAIELAVKVSLD  207 (220)
T ss_dssp             HHHHHHHHHHHHHHHHCCCSEEEEEEECCCGGGGTTCEEETTEECCCCCHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhCCCCceEEEEcCCchhhhcccccccCCCCCCcCHHHHHHHHHHHHHHHHH
Confidence            9999999999988643  57899999998743               4556777777777777775
>d1iofa_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1iu8a_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1auga_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Bacillus amyloliquefaciens [TaxId: 1390]} Back     information, alignment and structure