Citrus Sinensis ID: 024372

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
Protein Sequence
MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAITSS
Secondary Structure (PSIPRED)
cccccccEEEEEEcccccEEEEEEccccccccEEEEEEccccEEEEccccccEEEEcccccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEcccccEEEEEEEcccccEEEEccccccEEEEEcccccccccccccccccEEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEccccEEEEEcccccEEEEEEccccEEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEccccccEEEEEEccccccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEccccccEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEccccEEEEEEcccccEEEEEcccccEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEccc
Coil and Loop (DISEMBL)
mdkrkvavplvchghsrpvvdlfyspitpdgfflvsaskdsspmlrngetgdwigtfeghkgavwsccldanalfsasgsadFTAKLWDAltgdekhsfeHKHIVRACAFSEDTHLLLTGGFEKILRIFdlnrpdapprevgnssgsiRTVAWLHSDqtilssctdsggvrlwdarsgkivqtletkspvtsaevsrdgryittadgssvkfwdanhfglvkgynmpcntesaslepklgnifiaggedmwVHVFdfhtgeqiaitss
Flexible Loop (DISEMBL)
mdkrkvavplvchghsrpvvdLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKivqtletkspvtsaevsrdgryittadgssvkfWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAITSS
Low Complexity Region (SEG)
MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAITSS
Disordered region (IsUnstruct)
*****VAVPLVCHGHSRPVVDLFYSPITPDGFFLVSA**********GETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLN***************IRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL*************DGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIA****
Disordered Region (DISOPRED)
MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAITS*
Disordered Region (DISEMBL)
MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDA*********GSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL************RDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAITSS
Disordered Region (DISPRO)
****KVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAITS*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAITSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	268	2.2.26 [Sep-21-2011]
Q54LT8	293	Serine-threonine kinase r	yes	no	0.951	0.870	0.505	1e-66
Q5XIG8	350	Serine-threonine kinase r	yes	no	0.940	0.72	0.458	3e-57
Q9Z1Z2	350	Serine-threonine kinase r	yes	no	0.940	0.72	0.458	3e-57
Q9Y3F4	350	Serine-threonine kinase r	yes	no	0.940	0.72	0.458	3e-57
Q5E959	350	Serine-threonine kinase r	yes	no	0.940	0.72	0.458	4e-57
Q5ZL33	350	Serine-threonine kinase r	yes	no	0.940	0.72	0.450	5e-56
P0CS32	341	Eukaryotic translation in	no	no	0.880	0.692	0.286	2e-22
P0CS33	341	Eukaryotic translation in	N/A	no	0.880	0.692	0.286	2e-22
Q1HPW4	329	Eukaryotic translation in	N/A	no	0.884	0.720	0.279	3e-21
Q38884	328	Eukaryotic translation in	no	no	0.884	0.722	0.298	6e-21

>sp|Q54LT8|STRAP_DICDI Serine-threonine kinase receptor-associated protein OS=Dictyostelium discoideum GN=strap PE=3 SV=1

 Score =  253 bits (646), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 131/259 (50%), Positives = 169/259 (65%), Gaps = 4/259 (1%)

Query: 9   PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC 68
           PL+C GHSRPV DL +S    DG F+VSA  D SPMLRNGE GDWIGTFEGHKGAVWS  
Sbjct: 4   PLICSGHSRPVSDLSFSNENSDGSFIVSACLDGSPMLRNGENGDWIGTFEGHKGAVWSSR 63

Query: 69  LDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRI 128
            ++ A  + + SAD+T KLWD L G E  S EH+ IV+   FS +   ++TGG EKILRI
Sbjct: 64  FNSTASQALTASADYTVKLWDTLNGSEILSIEHQSIVKTADFSNNNSRVVTGGSEKILRI 123

Query: 129 FDLNRPDAPPREVGNSSGSIRTVAW-LHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK 187
           FDL RP+ P  ++   + +I+T  W +H+D  +LS   D   +R+WD RSG  V +L  K
Sbjct: 124 FDLERPNDPLLQISGHTNTIKTATWSVHNDDIVLSGGLDE-VIRIWDLRSGTQV-SLCAK 181

Query: 188 SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGG 247
           S +TS E S+D R++ T  G+ V FWDA  F  +K Y++P +   ASL P   + FIAGG
Sbjct: 182 SSITSMEFSKDRRFLVTTAGNEVTFWDAQSFYPLKVYSLPFDVNCASLHPD-NSKFIAGG 240

Query: 248 EDMWVHVFDFHTGEQIAIT 266
            D WVHV+DF TG +I + 
Sbjct: 241 SDFWVHVYDFSTGNEIEVN 259

The SMN complex plays an essential role in spliceosomal snRNP assembly in the cytoplasm and is required for pre-mRNA splicing in the nucleus. STRAP may play a role in the cellular distribution of the SMN complex.
Dictyostelium discoideum (taxid: 44689)

>sp|Q5XIG8|STRAP_RAT Serine-threonine kinase receptor-associated protein OS=Rattus norvegicus GN=Strap PE=1 SV=1

 Score =  222 bits (565), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 117/255 (45%), Positives = 166/255 (65%), Gaps = 3/255 (1%)

Query: 9   PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC 68
           PL C GH+RPVVDL +S ITP G+FL+SA KD  PMLR G+TGDWIGTF GHKGAVW   
Sbjct: 7   PLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGAT 66

Query: 69  LDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRI 128
           L+ +A  +A+ +ADFTAK+WDA++GDE  +  HKHIV+   F++D++ LLTGG +K+LRI
Sbjct: 67  LNKDATKAATAAADFTAKVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQDKLLRI 126

Query: 129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS 188
           +DLN+P+A P+E+   +  I+   W   D+ ILS+  D   VRLWD  +   V++L    
Sbjct: 127 YDLNKPEAEPKEISGHTSGIKKALWCSEDKQILSA--DDKTVRLWDHATMTEVKSLNFNM 184

Query: 189 PVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE 248
            V+S E   +G  +    G S+ F  A     +K +  P    SASL P+     +AGGE
Sbjct: 185 SVSSMEYIPEGEILVITYGRSIAFHSAVSLEPIKSFEAPATINSASLHPE-KEFLVAGGE 243

Query: 249 DMWVHVFDFHTGEQI 263
           D  ++ +D+++GE++
Sbjct: 244 DFKLYKYDYNSGEEL 258

The SMN complex plays an essential role in spliceosomal snRNP assembly in the cytoplasm and is required for pre-mRNA splicing in the nucleus. STRAP may play a role in the cellular distribution of the SMN complex. Negatively regulates TGF-beta signaling but positively regulates the PDPK1 kinase activity by enhancing its autophosphorylation and by significantly reducing the association of PDPK1 with 14-3-3 protein.

Rattus norvegicus (taxid: 10116)

>sp|Q9Z1Z2|STRAP_MOUSE Serine-threonine kinase receptor-associated protein OS=Mus musculus GN=Strap PE=1 SV=2

 Score =  221 bits (564), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 117/255 (45%), Positives = 166/255 (65%), Gaps = 3/255 (1%)

Query: 9   PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC 68
           PL C GH+RPVVDL +S ITP G+FL+SA KD  PMLR G+TGDWIGTF GHKGAVW   
Sbjct: 7   PLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGAT 66

Query: 69  LDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRI 128
           L+ +A  +A+ +ADFTAK+WDA++GDE  +  HKHIV+   F++D++ LLTGG +K+LRI
Sbjct: 67  LNKDATKAATAAADFTAKVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQDKLLRI 126

Query: 129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS 188
           +DLN+P+A P+E+   +  I+   W   D+ ILS+  D   VRLWD  +   V++L    
Sbjct: 127 YDLNKPEAEPKEISGHTSGIKKALWCSDDKQILSA--DDKTVRLWDHATMTEVKSLNFNM 184

Query: 189 PVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE 248
            V+S E   +G  +    G S+ F  A     +K +  P    SASL P+     +AGGE
Sbjct: 185 SVSSMEYIPEGEILVITYGRSIAFHSAVSLEPIKSFEAPATINSASLHPE-KEFLVAGGE 243

Query: 249 DMWVHVFDFHTGEQI 263
           D  ++ +D+++GE++
Sbjct: 244 DFKLYKYDYNSGEEL 258

The SMN complex plays an essential role in spliceosomal snRNP assembly in the cytoplasm and is required for pre-mRNA splicing in the nucleus. STRAP may play a role in the cellular distribution of the SMN complex. Negatively regulates TGF-beta signaling but positively regulates the PDPK1 kinase activity by enhancing its autophosphorylation and by significantly reducing the association of PDPK1 with 14-3-3 protein.

Mus musculus (taxid: 10090)

>sp|Q9Y3F4|STRAP_HUMAN Serine-threonine kinase receptor-associated protein OS=Homo sapiens GN=STRAP PE=1 SV=1

 Score =  221 bits (564), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 117/255 (45%), Positives = 166/255 (65%), Gaps = 3/255 (1%)

Query: 9   PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC 68
           PL C GH+RPVVDL +S ITP G+FL+SA KD  PMLR G+TGDWIGTF GHKGAVW   
Sbjct: 7   PLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGAT 66

Query: 69  LDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRI 128
           L+ +A  +A+ +ADFTAK+WDA++GDE  +  HKHIV+   F++D++ LLTGG +K+LRI
Sbjct: 67  LNKDATKAATAAADFTAKVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQDKLLRI 126

Query: 129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS 188
           +DLN+P+A P+E+   +  I+   W   D+ ILS+  D   VRLWD  +   V++L    
Sbjct: 127 YDLNKPEAEPKEISGHTSGIKKALWCSEDKQILSA--DDKTVRLWDHATMTEVKSLNFNM 184

Query: 189 PVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE 248
            V+S E   +G  +    G S+ F  A     +K +  P    SASL P+     +AGGE
Sbjct: 185 SVSSMEYIPEGEILVITYGRSIAFHSAVSLDPIKSFEAPATINSASLHPE-KEFLVAGGE 243

Query: 249 DMWVHVFDFHTGEQI 263
           D  ++ +D+++GE++
Sbjct: 244 DFKLYKYDYNSGEEL 258

The SMN complex plays an essential role in spliceosomal snRNP assembly in the cytoplasm and is required for pre-mRNA splicing in the nucleus. STRAP may play a role in the cellular distribution of the SMN complex. Negatively regulates TGF-beta signaling but positively regulates the PDPK1 kinase activity by enhancing its autophosphorylation and by significantly reducing the association of PDPK1 with 14-3-3 protein.

Homo sapiens (taxid: 9606)

>sp|Q5E959|STRAP_BOVIN Serine-threonine kinase receptor-associated protein OS=Bos taurus GN=STRAP PE=2 SV=1

 Score =  221 bits (563), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 117/255 (45%), Positives = 166/255 (65%), Gaps = 3/255 (1%)

Query: 9   PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC 68
           PL C GH+RPVVDL +S ITP G+FL+SA KD  PMLR G+TGDWIGTF GHKGAVW   
Sbjct: 7   PLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGAT 66

Query: 69  LDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRI 128
           L+ +A  +A+ +ADFTAK+WDA++GDE  +  HKHIV+   F++D++ LLTGG +K+LRI
Sbjct: 67  LNKDATKAATAAADFTAKVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQDKLLRI 126

Query: 129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS 188
           +DLN+P+A P+E+   +  I+   W   D+ ILS+  D   VRLWD  +   V++L    
Sbjct: 127 YDLNKPEAEPKEISGHTSGIKKALWCSEDKQILSA--DDKTVRLWDHATMTEVKSLNFNM 184

Query: 189 PVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE 248
            V+S E   +G  +    G S+ F  A     +K +  P    SASL P+     +AGGE
Sbjct: 185 SVSSMEYIPEGEILVITYGRSIAFHSAVSLDPIKSFEAPATINSASLHPE-KEFVVAGGE 243

Query: 249 DMWVHVFDFHTGEQI 263
           D  ++ +D+++GE++
Sbjct: 244 DFKLYKYDYNSGEEL 258

The SMN complex plays an essential role in spliceosomal snRNP assembly in the cytoplasm and is required for pre-mRNA splicing in the nucleus. STRAP may play a role in the cellular distribution of the SMN complex. Negatively regulates TGF-beta signaling but positively regulates the PDPK1 kinase activity by enhancing its autophosphorylation and by significantly reducing the association of PDPK1 with 14-3-3 protein.

Bos taurus (taxid: 9913)

>sp|Q5ZL33|STRAP_CHICK Serine-threonine kinase receptor-associated protein OS=Gallus gallus GN=STRAP PE=2 SV=2

 Score =  218 bits (554), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 115/255 (45%), Positives = 165/255 (64%), Gaps = 3/255 (1%)

Query: 9   PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC 68
           PL C GH+RPVVDL +S +TP G+FL+SA KD  PMLR G+TGDWIGTF GHKGAVW   
Sbjct: 7   PLTCSGHTRPVVDLAFSGVTPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGAT 66

Query: 69  LDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRI 128
           L+ +A  +A+ +ADFTAK+WDA++GDE  +  HKHIV++  F++D++ LLTGG +K+LRI
Sbjct: 67  LNKDATKAATAAADFTAKVWDAVSGDELITLAHKHIVKSVDFTQDSNYLLTGGQDKLLRI 126

Query: 129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS 188
           +DL++P+A P  V   +  I+   W   D+ ILS+  D   VRLWD  +   V+ L    
Sbjct: 127 YDLSKPEAEPDVVSGHTSGIKKALWSSDDKQILSA--DDKTVRLWDRSTMTEVKALNVAM 184

Query: 189 PVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE 248
            V+S E   +G+ +    G ++ F  A     +K +  P    SASL P+     +AGGE
Sbjct: 185 SVSSMEYVPEGQILVITYGKTIAFHSAETLEQIKSFEAPATINSASLHPE-KECLVAGGE 243

Query: 249 DMWVHVFDFHTGEQI 263
           D  ++ +D++TGE++
Sbjct: 244 DFKLYKYDYNTGEEL 258

The SMN complex plays an essential role in spliceosomal snRNP assembly in the cytoplasm and is required for pre-mRNA splicing in the nucleus. STRAP may play a role in the cellular distribution of the SMN complex.

Gallus gallus (taxid: 9031)

>sp|P0CS32|EIF3I_CRYNJ Eukaryotic translation initiation factor 3 subunit I OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=TIF34 PE=3 SV=1

 Score =  105 bits (263), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 128/262 (48%), Gaps = 26/262 (9%)

Query: 9   PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF------EGHKG 62
           P++  GH R +  + ++    +G  L SASKDS         G+ +GT+      +GH G
Sbjct: 3   PIILQGHERSLNQIVFNS---EGDLLFSASKDSVVNAWYTSNGERLGTYGGIKGGDGHNG 59

Query: 63  AVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLT--- 119
           +VW+  +D+   F  +G AD   KLW+  TG+  +++E    V+  A++ED  + L+   
Sbjct: 60  SVWTVAVDSQTRFLLTGGADNAMKLWEVKTGECLYTWEFLTAVKRVAWNEDDDMFLSITE 119

Query: 120 --GGFEKILRIFDLNRPDAPPREVGNS-------SGSIRTVAWLHSDQTILSSCTDSGGV 170
              G   ++RIF +NR D  PR    +       SGS  TVA        + +  +SG +
Sbjct: 120 QRSGQPSVIRIFSINRED--PRSQSTTPITEMRLSGSRATVAIWAPLSDYIITGHESGKI 177

Query: 171 RLWDARSGKIVQTLETK--SPVTSAEVSRDGRY-ITTADGSSVKFWDANHFGLVKGYNMP 227
             +D ++G+ VQ +E +  + ++  ++S DG Y IT +   + + WD     ++K Y   
Sbjct: 178 AKYDVKTGEEVQAVEDEHSALISDIQLSPDGTYFITASKDKTARLWDIETLEVMKVYTTE 237

Query: 228 CNTESASLEPKLGNIFIAGGED 249
               SA + P    I + GG+D
Sbjct: 238 TPVNSAVITPDRPYIILGGGQD 259

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

>sp|P0CS33|EIF3I_CRYNB Eukaryotic translation initiation factor 3 subunit I OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=TIF34 PE=3 SV=1

 Score =  105 bits (263), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 128/262 (48%), Gaps = 26/262 (9%)

Query: 9   PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF------EGHKG 62
           P++  GH R +  + ++    +G  L SASKDS         G+ +GT+      +GH G
Sbjct: 3   PIILQGHERSLNQIVFNS---EGDLLFSASKDSVVNAWYTSNGERLGTYGGIKGGDGHNG 59

Query: 63  AVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLT--- 119
           +VW+  +D+   F  +G AD   KLW+  TG+  +++E    V+  A++ED  + L+   
Sbjct: 60  SVWTVAVDSQTRFLLTGGADNAMKLWEVKTGECLYTWEFLTAVKRVAWNEDDDMFLSITE 119

Query: 120 --GGFEKILRIFDLNRPDAPPREVGNS-------SGSIRTVAWLHSDQTILSSCTDSGGV 170
              G   ++RIF +NR D  PR    +       SGS  TVA        + +  +SG +
Sbjct: 120 QRSGQPSVIRIFSINRED--PRSQSTTPITEMRLSGSRATVAIWAPLSDYIITGHESGKI 177

Query: 171 RLWDARSGKIVQTLETK--SPVTSAEVSRDGRY-ITTADGSSVKFWDANHFGLVKGYNMP 227
             +D ++G+ VQ +E +  + ++  ++S DG Y IT +   + + WD     ++K Y   
Sbjct: 178 AKYDVKTGEEVQAVEDEHSALISDIQLSPDGTYFITASKDKTARLWDIETLEVMKVYTTE 237

Query: 228 CNTESASLEPKLGNIFIAGGED 249
               SA + P    I + GG+D
Sbjct: 238 TPVNSAVITPDRPYIILGGGQD 259

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

>sp|Q1HPW4|EIF3I_BOMMO Eukaryotic translation initiation factor 3 subunit I OS=Bombyx mori PE=2 SV=1

 Score =  102 bits (254), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 121/254 (47%), Gaps = 17/254 (6%)

Query: 9   PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC 68
           PL+  GH R +  + Y+    +G  L SA+KDS P +     G+ +GTF GH G +W   
Sbjct: 3   PLMLQGHQRAITQIKYNR---EGDLLFSAAKDSKPNVWWSLNGERLGTFNGHGGVIWCLD 59

Query: 69  LDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL-----TGGFE 123
           +D  ++   +G  D + +LWD  TG    + +    VR C FS   +          G  
Sbjct: 60  VDWQSINLITGGGDSSCRLWDLETGKNIATLKSNSSVRTCNFSYSAYQAAYTTDKAMGHP 119

Query: 124 KILRIFDLNRPD------APPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
             + + D    D      AP  +   +   + ++ W   D+TI++   ++G +  WD R+
Sbjct: 120 CEVFVIDTRTIDETVSGQAPILKWEITDSKVTSMIWGSLDETIITG-HEAGDLIQWDLRT 178

Query: 178 GKIVQTL-ETKSPVTSAEVSRDG-RYITTADGSSVKFWDANHFGLVKGYNMPCNTESASL 235
           GK + ++ E    +T  ++SRDG  ++T +   + K +D N   L+K Y       SA+L
Sbjct: 179 GKKIHSVKEHTHQITDMQLSRDGTMFVTASKDHTAKLFDTNSLELLKEYKTERPVNSAAL 238

Query: 236 EPKLGNIFIAGGED 249
            P L ++ + GG+D
Sbjct: 239 SPILDHVVLGGGQD 252

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Bombyx mori (taxid: 7091)

>sp|Q38884|EIF3I_ARATH Eukaryotic translation initiation factor 3 subunit I OS=Arabidopsis thaliana GN=TIF3I1 PE=2 SV=2

 Score =  101 bits (251), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 121/258 (46%), Gaps = 21/258 (8%)

Query: 9   PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC 68
           P++  GH RP+  L Y+    +G  L S +KD +P L   + G+ +GT+ GH GAVW C 
Sbjct: 3   PILMKGHERPLTFLRYNR---EGDLLFSCAKDHTPTLWFADNGERLGTYRGHNGAVWCCD 59

Query: 69  LDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHL--LLTGGFEKIL 126
           +  ++    +GSAD TAKLWD  +G E  +F+     R+  F+    L  + T  F    
Sbjct: 60  VSRDSSRLITGSADQTAKLWDVKSGKELFTFKFNAPTRSVDFAVGDRLAVITTDHFVDRT 119

Query: 127 RIFDLNRPDAPPREVGNSS----------GSIRTVAWLHSDQTILSSCTDSGGVRLWDAR 176
               + R    P E    S            I    W   +QTI+S   D   +R+WDA 
Sbjct: 120 AAIHVKRIAEDPEEQDAESVLVLHCPDGKKRINRAVWGPLNQTIVSGGEDK-VIRIWDAE 178

Query: 177 SGKIVQTLET----KSPVTS-AEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTE 231
           +GK+++  +     K  +TS  + + D  ++T +   + K WD     L+K Y       
Sbjct: 179 TGKLLKQSDEEVGHKKDITSLCKAADDSHFLTGSLDKTAKLWDMRTLTLLKTYTTVVPVN 238

Query: 232 SASLEPKLGNIFIAGGED 249
           + SL P L ++ + GG+D
Sbjct: 239 AVSLSPLLNHVVLGGGQD 256

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	268
224070853	350	predicted protein [Populus trichocarpa]	0.985	0.754	0.912	1e-141
224054150	350	predicted protein [Populus trichocarpa]	0.985	0.754	0.909	1e-141
255553039	336	serine-threonine kinase receptor-associa	0.985	0.785	0.901	1e-140
225442803	346	PREDICTED: serine-threonine kinase recep	0.985	0.763	0.882	1e-138
255576966	350	serine-threonine kinase receptor-associa	0.985	0.754	0.878	1e-136
225445396	348	PREDICTED: serine-threonine kinase recep	0.985	0.758	0.882	1e-135
449521643	353	PREDICTED: serine-threonine kinase recep	0.985	0.747	0.856	1e-135
449457113	353	PREDICTED: serine-threonine kinase recep	0.985	0.747	0.852	1e-134
356563065	352	PREDICTED: serine-threonine kinase recep	0.985	0.75	0.852	1e-134
356511630	352	PREDICTED: serine-threonine kinase recep	0.985	0.75	0.852	1e-134

>gi|224070853|ref|XP_002303265.1| predicted protein [Populus trichocarpa] gi|222840697|gb|EEE78244.1| predicted protein [Populus trichocarpa]

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 241/264 (91%), Positives = 251/264 (95%)

Query: 1   MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
           MDK+KVAVPLVCHGHSRPVVDLFYSP+TPDGFFL+SASKDSSPMLRNGETGDWIGTFEGH
Sbjct: 1   MDKKKVAVPLVCHGHSRPVVDLFYSPVTPDGFFLISASKDSSPMLRNGETGDWIGTFEGH 60

Query: 61  KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTG 120
           KGAVWSCCLD +AL +ASGSADF+AKLWDALTGDE HSFEHKHIVRAC FSEDTHLLLTG
Sbjct: 61  KGAVWSCCLDTSALRAASGSADFSAKLWDALTGDELHSFEHKHIVRACTFSEDTHLLLTG 120

Query: 121 GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI 180
           G EKILRIFDLNRPDAPPREV NS GSIRTVAWLHSDQTILSSCTD GGVRLWD RSGKI
Sbjct: 121 GVEKILRIFDLNRPDAPPREVDNSPGSIRTVAWLHSDQTILSSCTDIGGVRLWDVRSGKI 180

Query: 181 VQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLG 240
           VQTLETKSPVTSAEVSRDGRYITTADGS+VKFWDANHFGLVK Y+MPCN ESASLEPKLG
Sbjct: 181 VQTLETKSPVTSAEVSRDGRYITTADGSTVKFWDANHFGLVKSYDMPCNVESASLEPKLG 240

Query: 241 NIFIAGGEDMWVHVFDFHTGEQIA 264
           N F+AGGEDMW+HVFDFHTGEQI 
Sbjct: 241 NKFVAGGEDMWIHVFDFHTGEQIG 264

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054150|ref|XP_002298116.1| predicted protein [Populus trichocarpa] gi|222845374|gb|EEE82921.1| predicted protein [Populus trichocarpa]

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 240/264 (90%), Positives = 250/264 (94%)

Query: 1   MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
           MDK+KVAVPLVCHGHSRPVVDLFYSP+TPDGFFL+SASKDSSPMLRNGETGDWIGTFEGH
Sbjct: 1   MDKKKVAVPLVCHGHSRPVVDLFYSPVTPDGFFLISASKDSSPMLRNGETGDWIGTFEGH 60

Query: 61  KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTG 120
           KGAVWSCCLD NAL +ASGSADF+AKLWDALTGDE  SFEHKHIVRACAFSEDTHLLLTG
Sbjct: 61  KGAVWSCCLDTNALRAASGSADFSAKLWDALTGDELQSFEHKHIVRACAFSEDTHLLLTG 120

Query: 121 GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI 180
           GFEKILRIFDLNRPDAPPREV NS GSIRTVAWLHSDQTILSSC D GGVRLWD RSGKI
Sbjct: 121 GFEKILRIFDLNRPDAPPREVDNSPGSIRTVAWLHSDQTILSSCADIGGVRLWDIRSGKI 180

Query: 181 VQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLG 240
           VQTLETKSPVTSAEVS+DGRYITTADGS+VKFWDANHFGLVK Y+MPCN ESASLEPK G
Sbjct: 181 VQTLETKSPVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYDMPCNVESASLEPKFG 240

Query: 241 NIFIAGGEDMWVHVFDFHTGEQIA 264
           N F+AGGEDMW+HVFDFHTGEQI 
Sbjct: 241 NKFVAGGEDMWIHVFDFHTGEQIG 264

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553039|ref|XP_002517562.1| serine-threonine kinase receptor-associated protein, putative [Ricinus communis] gi|223543194|gb|EEF44726.1| serine-threonine kinase receptor-associated protein, putative [Ricinus communis]

 Score =  501 bits (1291), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 238/264 (90%), Positives = 249/264 (94%)

Query: 1   MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
           MDK+KVAVPLVCHGHSRPVVDLFYSP+TPDGFFL+SASKDSSPMLRNGETGDWIGTFEGH
Sbjct: 1   MDKKKVAVPLVCHGHSRPVVDLFYSPVTPDGFFLISASKDSSPMLRNGETGDWIGTFEGH 60

Query: 61  KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTG 120
           KGAVWSC LD  AL +AS SADFTAKLWDALTGDE HSFEH+HIVRACAFSEDTHLLLTG
Sbjct: 61  KGAVWSCSLDTKALRAASASADFTAKLWDALTGDELHSFEHRHIVRACAFSEDTHLLLTG 120

Query: 121 GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI 180
           G EKILR+FDLNRPDAPPREV +S GSIRTVAWLHSDQTILSSCTD GGVRLWD RSGKI
Sbjct: 121 GMEKILRLFDLNRPDAPPREVNSSPGSIRTVAWLHSDQTILSSCTDMGGVRLWDIRSGKI 180

Query: 181 VQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLG 240
           VQTLETKSPVTSAEVS+DGRYITTADGS+VKFWDANHFGLVK YNMPCN ESASLEPKLG
Sbjct: 181 VQTLETKSPVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYNMPCNVESASLEPKLG 240

Query: 241 NIFIAGGEDMWVHVFDFHTGEQIA 264
           N F+AGGEDMW+HVFDFHTGEQI 
Sbjct: 241 NKFVAGGEDMWIHVFDFHTGEQIG 264

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442803|ref|XP_002285272.1| PREDICTED: serine-threonine kinase receptor-associated protein [Vitis vinifera] gi|297743376|emb|CBI36243.3| unnamed protein product [Vitis vinifera]

 Score =  496 bits (1276), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 233/264 (88%), Positives = 249/264 (94%)

Query: 1   MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
           MDK+KVAVPLVCHGHSRPVVDLFYSP+TPDGFFL+SASKDS+PMLRNGETGDWIGTFEGH
Sbjct: 1   MDKKKVAVPLVCHGHSRPVVDLFYSPVTPDGFFLISASKDSTPMLRNGETGDWIGTFEGH 60

Query: 61  KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTG 120
           KGAVWSC LD NAL +ASGSADFTAKLWDALTGDE HSFEHKHIVRACAFSEDTH LLTG
Sbjct: 61  KGAVWSCSLDTNALRAASGSADFTAKLWDALTGDELHSFEHKHIVRACAFSEDTHFLLTG 120

Query: 121 GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI 180
           G EK+LRIFDLNRPDAPPREV NS GSIRTVAWLHSDQTILSSCTD+GGVRLWD R+GKI
Sbjct: 121 GVEKVLRIFDLNRPDAPPREVENSPGSIRTVAWLHSDQTILSSCTDNGGVRLWDVRTGKI 180

Query: 181 VQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLG 240
           V TLETKSPVTSAEVS+DGRYITTADG++VKFWDANH+GLVK YNMPCN ESASLEPK G
Sbjct: 181 VHTLETKSPVTSAEVSQDGRYITTADGTTVKFWDANHYGLVKSYNMPCNMESASLEPKFG 240

Query: 241 NIFIAGGEDMWVHVFDFHTGEQIA 264
           N FIAGGEDMW+H+FDF+TGE+I 
Sbjct: 241 NKFIAGGEDMWIHMFDFNTGEEIG 264

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576966|ref|XP_002529368.1| serine-threonine kinase receptor-associated protein, putative [Ricinus communis] gi|223531188|gb|EEF33035.1| serine-threonine kinase receptor-associated protein, putative [Ricinus communis]

 Score =  490 bits (1261), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 232/264 (87%), Positives = 246/264 (93%)

Query: 1   MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
           MDK++VAVPLVCHGHSRPVVDLFYSP+TPDGFFL+SASKDSSPMLRNGETGDWIGTFEGH
Sbjct: 1   MDKKRVAVPLVCHGHSRPVVDLFYSPVTPDGFFLISASKDSSPMLRNGETGDWIGTFEGH 60

Query: 61  KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTG 120
           KGAVWSCCLD NAL +ASGSADFTAK+WDALTGD  HSFEHKHIVRA AFSEDTHLLLTG
Sbjct: 61  KGAVWSCCLDTNALRAASGSADFTAKVWDALTGDVLHSFEHKHIVRASAFSEDTHLLLTG 120

Query: 121 GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI 180
           G EK+LRIFDLNRPDAPPREV  S GS+RTVAWLHSDQTILSSCTD GGVRLWD RSGKI
Sbjct: 121 GIEKVLRIFDLNRPDAPPREVDKSPGSVRTVAWLHSDQTILSSCTDMGGVRLWDVRSGKI 180

Query: 181 VQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLG 240
           VQTLETKS VTSAEVS+DGRYITT DGS+VKFWDANHFGLVK Y+MPC  ESASLEPK G
Sbjct: 181 VQTLETKSSVTSAEVSQDGRYITTCDGSTVKFWDANHFGLVKSYDMPCTVESASLEPKYG 240

Query: 241 NIFIAGGEDMWVHVFDFHTGEQIA 264
           N FIAGGEDMW+HVFDFHTG++IA
Sbjct: 241 NKFIAGGEDMWIHVFDFHTGDEIA 264

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445396|ref|XP_002284993.1| PREDICTED: serine-threonine kinase receptor-associated protein [Vitis vinifera] gi|297738901|emb|CBI28146.3| unnamed protein product [Vitis vinifera]

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 233/264 (88%), Positives = 245/264 (92%)

Query: 1   MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
           M+K++VAVPLVCHGHSRPVVDLFYSPITPDGFFL+SASKDSSPMLRNGETGDWIGTFEGH
Sbjct: 1   MEKKRVAVPLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGH 60

Query: 61  KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTG 120
           KGAVWSCCLD NAL +ASGSADFTAK+WDALTGDE HSFEHKHIVRACAFSEDTH LLTG
Sbjct: 61  KGAVWSCCLDTNALRAASGSADFTAKIWDALTGDELHSFEHKHIVRACAFSEDTHSLLTG 120

Query: 121 GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI 180
           G EKILRIFDLNRPDAPPREV NS GS+RTVAWLHSDQTILSSCTD GGVRLWD RSGKI
Sbjct: 121 GVEKILRIFDLNRPDAPPREVDNSPGSVRTVAWLHSDQTILSSCTDIGGVRLWDVRSGKI 180

Query: 181 VQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLG 240
           VQTLET S VTSAEVS+DGRYI TADGSSVKFWDANHFGLVK Y MPC  ESASLEPK G
Sbjct: 181 VQTLETNSSVTSAEVSQDGRYIITADGSSVKFWDANHFGLVKSYKMPCTVESASLEPKNG 240

Query: 241 NIFIAGGEDMWVHVFDFHTGEQIA 264
           + FIAGGEDMW+ +FDFHTGE+IA
Sbjct: 241 DKFIAGGEDMWIRLFDFHTGEEIA 264

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449521643|ref|XP_004167839.1| PREDICTED: serine-threonine kinase receptor-associated protein-like [Cucumis sativus]

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 226/264 (85%), Positives = 246/264 (93%)

Query: 1   MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
           MDK++VA+PLVCHGHSRPVVDLFYSP+TPDGFFL+SASKDS+PMLRNGETGDWIGTFEGH
Sbjct: 1   MDKKRVAIPLVCHGHSRPVVDLFYSPVTPDGFFLISASKDSNPMLRNGETGDWIGTFEGH 60

Query: 61  KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTG 120
           KGAVWSCCLD NAL +A+GSADF+AK+WDALTGD  HSFEHKHIVRAC+FSEDTHLLLTG
Sbjct: 61  KGAVWSCCLDTNALRAATGSADFSAKVWDALTGDVLHSFEHKHIVRACSFSEDTHLLLTG 120

Query: 121 GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI 180
           G EK+LRI+DLNRPDAPPREV  S GS+RTV WLHSDQTILSSCTD GGVRLWD RSG+I
Sbjct: 121 GLEKVLRIYDLNRPDAPPREVDKSPGSVRTVTWLHSDQTILSSCTDMGGVRLWDVRSGQI 180

Query: 181 VQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLG 240
           VQTLETKS VTSAEVS+DGRYITTADGS+VKFWDANHFGLVK YNMPC  ESASLEPK G
Sbjct: 181 VQTLETKSSVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYNMPCTVESASLEPKYG 240

Query: 241 NIFIAGGEDMWVHVFDFHTGEQIA 264
             FIAGGEDMW+HVFDFHTG++IA
Sbjct: 241 MKFIAGGEDMWIHVFDFHTGDEIA 264

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457113|ref|XP_004146293.1| PREDICTED: serine-threonine kinase receptor-associated protein-like [Cucumis sativus]

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 225/264 (85%), Positives = 245/264 (92%)

Query: 1   MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
           MDK++VA+PLVCHGHSRPVVDLFYSP+TPDGFFL+SASKDS+PMLRNGE GDWIGTFEGH
Sbjct: 1   MDKKRVAIPLVCHGHSRPVVDLFYSPVTPDGFFLISASKDSNPMLRNGENGDWIGTFEGH 60

Query: 61  KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTG 120
           KGAVWSCCLD NAL +A+GSADF+AK+WDALTGD  HSFEHKHIVRAC+FSEDTHLLLTG
Sbjct: 61  KGAVWSCCLDTNALRAATGSADFSAKVWDALTGDVLHSFEHKHIVRACSFSEDTHLLLTG 120

Query: 121 GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI 180
           G EK+LRI+DLNRPDAPPREV  S GS+RTV WLHSDQTILSSCTD GGVRLWD RSG+I
Sbjct: 121 GLEKVLRIYDLNRPDAPPREVDKSPGSVRTVTWLHSDQTILSSCTDMGGVRLWDVRSGQI 180

Query: 181 VQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLG 240
           VQTLETKS VTSAEVS+DGRYITTADGS+VKFWDANHFGLVK YNMPC  ESASLEPK G
Sbjct: 181 VQTLETKSSVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYNMPCTVESASLEPKYG 240

Query: 241 NIFIAGGEDMWVHVFDFHTGEQIA 264
             FIAGGEDMW+HVFDFHTG++IA
Sbjct: 241 MKFIAGGEDMWIHVFDFHTGDEIA 264

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563065|ref|XP_003549786.1| PREDICTED: serine-threonine kinase receptor-associated protein-like [Glycine max]

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 225/264 (85%), Positives = 244/264 (92%)

Query: 1   MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
           M+K+KVAVPLVCHGHSRPVVDLFYSP+TPDGFFL+SASKDSSPMLRNGETGDWIGTFEGH
Sbjct: 1   MEKKKVAVPLVCHGHSRPVVDLFYSPVTPDGFFLISASKDSSPMLRNGETGDWIGTFEGH 60

Query: 61  KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTG 120
           KGAVWSCCLD +AL +A+ SADF+ K+WDALTGDE HSFEHKHI RACAFSEDTHLLLTG
Sbjct: 61  KGAVWSCCLDTSALRAATASADFSTKVWDALTGDELHSFEHKHIARACAFSEDTHLLLTG 120

Query: 121 GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI 180
           G EKILRI+D+NRPDAPPREV  S GS+RTVAWLHSDQTILSSCTD GGVRLWD RSGKI
Sbjct: 121 GVEKILRIYDMNRPDAPPREVDKSPGSVRTVAWLHSDQTILSSCTDMGGVRLWDVRSGKI 180

Query: 181 VQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLG 240
           VQTLETKS VTSAEVS+DGRYITTADGS+VKFWDAN++GLVK Y+MPC  ES SLEPK G
Sbjct: 181 VQTLETKSSVTSAEVSQDGRYITTADGSTVKFWDANYYGLVKSYDMPCTIESVSLEPKYG 240

Query: 241 NIFIAGGEDMWVHVFDFHTGEQIA 264
           N F+AGGEDMWVHVFDFHTG +IA
Sbjct: 241 NKFVAGGEDMWVHVFDFHTGNEIA 264

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511630|ref|XP_003524526.1| PREDICTED: serine-threonine kinase receptor-associated protein-like [Glycine max]

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 225/264 (85%), Positives = 244/264 (92%)

Query: 1   MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
           M+K+KVAVPLVCHGHSRPVVDLFYSP+TPDGFFL+SASKDSSPMLRNGETGDWIGTFEGH
Sbjct: 1   MEKKKVAVPLVCHGHSRPVVDLFYSPVTPDGFFLISASKDSSPMLRNGETGDWIGTFEGH 60

Query: 61  KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTG 120
           KGAVWSCCLD +AL +A+ SADF+ K+WDALTGDE HSFEHKHIVRACAFSEDTHLLLTG
Sbjct: 61  KGAVWSCCLDTSALRAATASADFSTKVWDALTGDELHSFEHKHIVRACAFSEDTHLLLTG 120

Query: 121 GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI 180
           G EKILRI+D+NRPDAPPREV  S GS+RTVAWLHSDQTILSSCTD GGVRLWD RSGKI
Sbjct: 121 GVEKILRIYDMNRPDAPPREVDKSPGSVRTVAWLHSDQTILSSCTDMGGVRLWDVRSGKI 180

Query: 181 VQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLG 240
           VQTLETKS VTSAEVS+DGRYITTADGS+VKFWDAN++GLVK Y+MPC  ES SLEPK G
Sbjct: 181 VQTLETKSSVTSAEVSQDGRYITTADGSTVKFWDANYYGLVKSYDMPCTVESVSLEPKYG 240

Query: 241 NIFIAGGEDMWVHVFDFHTGEQIA 264
           N F+AGGEDMWV VFDFHTG +IA
Sbjct: 241 NKFVAGGEDMWVRVFDFHTGNEIA 264

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	268
TAIR|locus:2093182	341	AT3G15610 "AT3G15610" [Arabido	0.981	0.771	0.844	2.1e-123
TAIR|locus:2035179	343	AT1G52730 "AT1G52730" [Arabido	0.981	0.766	0.847	9.2e-123
TAIR|locus:2037818	333	AT1G15470 "AT1G15470" [Arabido	0.962	0.774	0.841	1.2e-120
DICTYBASE|DDB_G0286457	293	strap "putative serine-threoni	0.947	0.866	0.507	4.1e-65
FB|FBgn0034876	328	wmd "wing morphogenesis defect	0.947	0.774	0.476	1.8e-64
ZFIN|ZDB-GENE-040426-1110	329	strap "serine/threonine kinase	0.944	0.768	0.466	4.2e-63
UNIPROTKB|E2RBU1	350	STRAP "Uncharacterized protein	0.940	0.72	0.458	5e-60
UNIPROTKB|Q9Y3F4	350	STRAP "Serine-threonine kinase	0.940	0.72	0.458	5e-60
UNIPROTKB|Q5E959	350	STRAP "Serine-threonine kinase	0.940	0.72	0.458	6.4e-60
MGI|MGI:1329037	350	Strap "serine/threonine kinase	0.940	0.72	0.458	6.4e-60

TAIR|locus:2093182 AT3G15610 "AT3G15610" [Arabidopsis thaliana (taxid:3702)]

 Score = 1213 (432.1 bits), Expect = 2.1e-123, P = 2.1e-123
 Identities = 222/263 (84%), Positives = 239/263 (90%)

Query:     1 MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
             M+K+KVA PLVCHGHSRPVVDLFYSPITPDGFFL+SASKDS PMLRNGETGDWIGTFEGH
Sbjct:     1 MEKKKVATPLVCHGHSRPVVDLFYSPITPDGFFLISASKDSQPMLRNGETGDWIGTFEGH 60

Query:    61 KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTG 120
             KGAVWS CLD NAL +AS SADF+AKLWDALTGD  HSFEHKHIVRACAFS+DT  L+TG
Sbjct:    61 KGAVWSSCLDNNALRAASASADFSAKLWDALTGDVLHSFEHKHIVRACAFSQDTKYLITG 120

Query:   121 GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI 180
             GFEKILR+FDLNR DAPP E+  S GSIRT+ WLH DQTILSSCTD GGVRLWD RSGKI
Sbjct:   121 GFEKILRVFDLNRLDAPPTEIDKSPGSIRTLTWLHGDQTILSSCTDIGGVRLWDVRSGKI 180

Query:   181 VQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLG 240
             VQTLETKSPVTSAEVS+DGRYITTADGS+VKFWDANHFGLVK Y+MPCN ESASLEPK G
Sbjct:   181 VQTLETKSPVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYDMPCNIESASLEPKSG 240

Query:   241 NIFIAGGEDMWVHVFDFHTGEQI 263
             N F+AGGEDMWV +FDFHTG++I
Sbjct:   241 NKFVAGGEDMWVRLFDFHTGKEI 263

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2035179 AT1G52730 "AT1G52730" [Arabidopsis thaliana (taxid:3702)]

 Score = 1207 (429.9 bits), Expect = 9.2e-123, P = 9.2e-123
 Identities = 223/263 (84%), Positives = 238/263 (90%)

Query:     1 MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
             M+K+KV +P VCHGHSRPVVDLFYSPITPDGFFL+SASKDS PMLRNGETGDWIGTFEGH
Sbjct:     1 MEKKKVTIPQVCHGHSRPVVDLFYSPITPDGFFLISASKDSHPMLRNGETGDWIGTFEGH 60

Query:    61 KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTG 120
             KGAVWS CLD NAL +AS SADF+AKLWDALTGD  HSFEHKHIVRACAFSEDT  LLTG
Sbjct:    61 KGAVWSSCLDNNALRAASASADFSAKLWDALTGDVLHSFEHKHIVRACAFSEDTKSLLTG 120

Query:   121 GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI 180
             GFEKILR+FD+NR DAPP EV  S GSIRT+ WLHSDQTILSSCTD GGVRLWD RSGKI
Sbjct:   121 GFEKILRVFDMNRLDAPPTEVDKSPGSIRTLTWLHSDQTILSSCTDIGGVRLWDVRSGKI 180

Query:   181 VQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLG 240
             VQTLETKSPVTSAEVS+DGRYITTADGS+VKFWDANHFGLVK Y+MPCN ESASLEPK G
Sbjct:   181 VQTLETKSPVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYDMPCNIESASLEPKSG 240

Query:   241 NIFIAGGEDMWVHVFDFHTGEQI 263
               F+AGGEDMWV VFDF+TGE+I
Sbjct:   241 EKFVAGGEDMWVRVFDFYTGEEI 263

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2037818 AT1G15470 "AT1G15470" [Arabidopsis thaliana (taxid:3702)]

 Score = 1187 (422.9 bits), Expect = 1.2e-120, P = 1.2e-120
 Identities = 217/258 (84%), Positives = 234/258 (90%)

Query:     6 VAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVW 65
             +  PLVCHGHSRPVVD+ YSP+TPDGFFL+SASKDS+PMLRNGETGDWIGTFEGHKGAVW
Sbjct:     1 MGAPLVCHGHSRPVVDVAYSPVTPDGFFLISASKDSNPMLRNGETGDWIGTFEGHKGAVW 60

Query:    66 SCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKI 125
             SC LD NA+ +AS SADFTAK+W+ALTGDE HSFEHKHIVRACAFSEDTH LLTGG EKI
Sbjct:    61 SCSLDKNAIRAASASADFTAKIWNALTGDELHSFEHKHIVRACAFSEDTHRLLTGGMEKI 120

Query:   126 LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE 185
             LRIFDLNRPDAPP+EVGNS GSIRTV WLHSD TILSSCTD+G +RLWD RS KIV TLE
Sbjct:   121 LRIFDLNRPDAPPKEVGNSPGSIRTVEWLHSDNTILSSCTDTGDIRLWDIRSDKIVHTLE 180

Query:   186 TKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIA 245
             TKSPVTSAEVS+DGRYITTADGSSVKFWDA +FGL+K Y+MPCN ESASLEPK GN FIA
Sbjct:   181 TKSPVTSAEVSQDGRYITTADGSSVKFWDAKNFGLLKSYDMPCNVESASLEPKHGNTFIA 240

Query:   246 GGEDMWVHVFDFHTGEQI 263
             GGEDMWVH FDF TGE+I
Sbjct:   241 GGEDMWVHRFDFQTGEEI 258

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

DICTYBASE|DDB_G0286457 strap "putative serine-threonine kinase receptor-associated protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
 Identities = 131/258 (50%), Positives = 169/258 (65%)

Query:     9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC 68
             PL+C GHSRPV DL +S    DG F+VSA  D SPMLRNGE GDWIGTFEGHKGAVWS  
Sbjct:     4 PLICSGHSRPVSDLSFSNENSDGSFIVSACLDGSPMLRNGENGDWIGTFEGHKGAVWSSR 63

Query:    69 LDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRI 128
              ++ A  + + SAD+T KLWD L G E  S EH+ IV+   FS +   ++TGG EKILRI
Sbjct:    64 FNSTASQALTASADYTVKLWDTLNGSEILSIEHQSIVKTADFSNNNSRVVTGGSEKILRI 123

Query:   129 FDLNRPDAPPREVGNSSGSIRTVAW-LHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK 187
             FDL RP+ P  ++   + +I+T  W +H+D  +LS   D   +R+WD RSG  V +L  K
Sbjct:   124 FDLERPNDPLLQISGHTNTIKTATWSVHNDDIVLSGGLDEV-IRIWDLRSGTQV-SLCAK 181

Query:   188 SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGG 247
             S +TS E S+D R++ T  G+ V FWDA  F  +K Y++P +   ASL P   + FIAGG
Sbjct:   182 SSITSMEFSKDRRFLVTTAGNEVTFWDAQSFYPLKVYSLPFDVNCASLHPD-NSKFIAGG 240

Query:   248 EDMWVHVFDFHTGEQIAI 265
              D WVHV+DF TG +I +
Sbjct:   241 SDFWVHVYDFSTGNEIEV 258

GO:0005575 "cellular_component" evidence=ND

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=ISS

FB|FBgn0034876 wmd "wing morphogenesis defect" [Drosophila melanogaster (taxid:7227)]

 Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
 Identities = 122/256 (47%), Positives = 173/256 (67%)

Query:     8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSC 67
             +PL C GH+RPVV L +S I   G+FL+SA KD SPMLR+G+TGDW+GTFEGHKGAVW+ 
Sbjct:     9 IPLTCSGHTRPVVHLDFSDICDAGYFLISACKDGSPMLRHGDTGDWVGTFEGHKGAVWNA 68

Query:    68 CLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILR 127
              L+ NA  +ASG+ADFT K+W+A+TG E HSF+HKHIV++ AF  D+  ++TG  EK++R
Sbjct:    69 TLNRNATLAASGAADFTGKVWNAVTGAEIHSFQHKHIVKSVAFDRDSENIVTGSNEKLVR 128

Query:   128 IFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK 187
             +F+L +P+A P E    +G+I+   +   D+ I+S+  D   VRLWD  +G  VQ L+  
Sbjct:   129 VFNLEQPEAQPEEYAGHTGAIKRALFCRGDKCIISAAEDKT-VRLWDRMTGIEVQRLQFN 187

Query:   188 SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGG 247
             S   S E+S D   +T + GSS+ FW+ +    +K   +P N  SASL P   ++F+ GG
Sbjct:   188 SNPNSLEISSDNHILTISHGSSISFWEIDTLKKLKEVKVPTNVASASLHPDK-HVFVCGG 246

Query:   248 EDMWVHVFDFHTGEQI 263
             ED  ++ FD+ TG +I
Sbjct:   247 EDFKMYKFDYITGNEI 262

GO:0005102 "receptor binding" evidence=ISS

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

GO:0005875 "microtubule associated complex" evidence=IDA

ZFIN|ZDB-GENE-040426-1110 strap "serine/threonine kinase receptor associated protein" [Danio rerio (taxid:7955)]

 Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
 Identities = 119/255 (46%), Positives = 175/255 (68%)

Query:     9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC 68
             PL C GH+RPVVDL +S ITP G+FL+SA KD  PMLR G+TGDWIGTF GHKGAVW   
Sbjct:     7 PLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGAT 66

Query:    69 LDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRI 128
             L+  A  +A+ +ADFTAK+WDA+TGDE  +  HKHIV++  F++D++ LLTGG +K+LRI
Sbjct:    67 LNTEATKAATAAADFTAKVWDAVTGDEVLTLAHKHIVKSVNFTQDSNYLLTGGNDKVLRI 126

Query:   129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS 188
             +DL++P+A P+E+   + +I+   W ++DQ ILS+  D   +RLWD  + + V+TL   +
Sbjct:   127 YDLSKPEAEPQEIAGHTSAIKKALWCNNDQQILSAADDKT-IRLWDKNTNEAVKTLSFDA 185

Query:   189 PVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE 248
              V+S E   DG  +    G ++ F++A+   L+K  + P +  SASL P   + F+AGG+
Sbjct:   186 SVSSMEYIPDGETLVITYGRTIAFYNAHSLDLIKTVDAPASIHSASLHPDK-DFFVAGGD 244

Query:   249 DMWVHVFDFHTGEQI 263
             D  ++ +D+ T E++
Sbjct:   245 DFKLYKYDYTTKEEM 259

GO:0016310 "phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

UNIPROTKB|E2RBU1 STRAP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
 Identities = 117/255 (45%), Positives = 166/255 (65%)

Query:     9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC 68
             PL C GH+RPVVDL +S ITP G+FL+SA KD  PMLR G+TGDWIGTF GHKGAVW   
Sbjct:     7 PLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGAT 66

Query:    69 LDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRI 128
             L+ +A  +A+ +ADFTAK+WDA++GDE  +  HKHIV+   F++D++ LLTGG +K+LRI
Sbjct:    67 LNKDATKAATAAADFTAKVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQDKLLRI 126

Query:   129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS 188
             +DLN+P+A P+E+   +  I+   W   D+ ILS+  D   VRLWD  +   V++L    
Sbjct:   127 YDLNKPEAEPKEISGHTSGIKKALWCSEDKQILSA--DDKTVRLWDHATMTEVKSLNFNM 184

Query:   189 PVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE 248
              V+S E   +G  +    G S+ F  A     +K +  P    SASL P+     +AGGE
Sbjct:   185 SVSSMEYIPEGEILVITYGRSIAFHSAVSLDPIKSFEAPATINSASLHPEK-EFLVAGGE 243

Query:   249 DMWVHVFDFHTGEQI 263
             D  ++ +D+++GE++
Sbjct:   244 DFKLYKYDYNSGEEL 258

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|Q9Y3F4 STRAP "Serine-threonine kinase receptor-associated protein" [Homo sapiens (taxid:9606)]

 Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
 Identities = 117/255 (45%), Positives = 166/255 (65%)

Query:     9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC 68
             PL C GH+RPVVDL +S ITP G+FL+SA KD  PMLR G+TGDWIGTF GHKGAVW   
Sbjct:     7 PLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGAT 66

Query:    69 LDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRI 128
             L+ +A  +A+ +ADFTAK+WDA++GDE  +  HKHIV+   F++D++ LLTGG +K+LRI
Sbjct:    67 LNKDATKAATAAADFTAKVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQDKLLRI 126

Query:   129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS 188
             +DLN+P+A P+E+   +  I+   W   D+ ILS+  D   VRLWD  +   V++L    
Sbjct:   127 YDLNKPEAEPKEISGHTSGIKKALWCSEDKQILSA--DDKTVRLWDHATMTEVKSLNFNM 184

Query:   189 PVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE 248
              V+S E   +G  +    G S+ F  A     +K +  P    SASL P+     +AGGE
Sbjct:   185 SVSSMEYIPEGEILVITYGRSIAFHSAVSLDPIKSFEAPATINSASLHPEK-EFLVAGGE 243

Query:   249 DMWVHVFDFHTGEQI 263
             D  ++ +D+++GE++
Sbjct:   244 DFKLYKYDYNSGEEL 258

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

GO:0007179 "transforming growth factor beta receptor signaling pathway" evidence=TAS

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0030054 "cell junction" evidence=IDA

UNIPROTKB|Q5E959 STRAP "Serine-threonine kinase receptor-associated protein" [Bos taurus (taxid:9913)]

 Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
 Identities = 117/255 (45%), Positives = 166/255 (65%)

Query:     9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC 68
             PL C GH+RPVVDL +S ITP G+FL+SA KD  PMLR G+TGDWIGTF GHKGAVW   
Sbjct:     7 PLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGAT 66

Query:    69 LDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRI 128
             L+ +A  +A+ +ADFTAK+WDA++GDE  +  HKHIV+   F++D++ LLTGG +K+LRI
Sbjct:    67 LNKDATKAATAAADFTAKVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQDKLLRI 126

Query:   129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS 188
             +DLN+P+A P+E+   +  I+   W   D+ ILS+  D   VRLWD  +   V++L    
Sbjct:   127 YDLNKPEAEPKEISGHTSGIKKALWCSEDKQILSA--DDKTVRLWDHATMTEVKSLNFNM 184

Query:   189 PVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE 248
              V+S E   +G  +    G S+ F  A     +K +  P    SASL P+     +AGGE
Sbjct:   185 SVSSMEYIPEGEILVITYGRSIAFHSAVSLDPIKSFEAPATINSASLHPEK-EFVVAGGE 243

Query:   249 DMWVHVFDFHTGEQI 263
             D  ++ +D+++GE++
Sbjct:   244 DFKLYKYDYNSGEEL 258

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

MGI|MGI:1329037 Strap "serine/threonine kinase receptor associated protein" [Mus musculus (taxid:10090)]

 Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
 Identities = 117/255 (45%), Positives = 166/255 (65%)

Query:     9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC 68
             PL C GH+RPVVDL +S ITP G+FL+SA KD  PMLR G+TGDWIGTF GHKGAVW   
Sbjct:     7 PLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGAT 66

Query:    69 LDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRI 128
             L+ +A  +A+ +ADFTAK+WDA++GDE  +  HKHIV+   F++D++ LLTGG +K+LRI
Sbjct:    67 LNKDATKAATAAADFTAKVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQDKLLRI 126

Query:   129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS 188
             +DLN+P+A P+E+   +  I+   W   D+ ILS+  D   VRLWD  +   V++L    
Sbjct:   127 YDLNKPEAEPKEISGHTSGIKKALWCSDDKQILSA--DDKTVRLWDHATMTEVKSLNFNM 184

Query:   189 PVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE 248
              V+S E   +G  +    G S+ F  A     +K +  P    SASL P+     +AGGE
Sbjct:   185 SVSSMEYIPEGEILVITYGRSIAFHSAVSLEPIKSFEAPATINSASLHPEK-EFLVAGGE 243

Query:   249 DMWVHVFDFHTGEQI 263
             D  ++ +D+++GE++
Sbjct:   244 DFKLYKYDYNSGEEL 258

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0005102 "receptor binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54LT8	STRAP_DICDI	No assigned EC number	0.5057	0.9514	0.8703	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pm.C_LG_III0089	hypothetical protein (351 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.X.3063.1	hypothetical protein (350 aa)			•						0.484
	gw1.X.5093.1	hypothetical protein (378 aa)			•						0.482
	eugene3.00140830	hypothetical protein (166 aa)			•						0.480
	gw1.XII.1370.1	hypothetical protein (314 aa)			•						0.479
	gw1.130.1.1	hypothetical protein (417 aa)			•						0.479
	gw1.XV.2558.1	annotation not avaliable (412 aa)			•						0.475
	estExt_fgenesh4_pm.C_LG_IV0224	hypothetical protein (348 aa)			•						0.475
	gw1.IX.1982.1	hypothetical protein (424 aa)			•						0.474
	eugene3.00160385	hypothetical protein (218 aa)			•						0.471
	grail3.0125002301	hypothetical protein (256 aa)			•						0.442

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	268
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-32
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-32
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-31
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-30
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-24
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-21
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-16
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-13
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-11
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-05
smart00320	40	smart00320, WD40, WD40 repeats	4e-05
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	0.004

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  120 bits (304), Expect = 1e-32
 Identities = 76/258 (29%), Positives = 127/258 (49%), Gaps = 14/258 (5%)

Query: 14  GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA 73
           GH+  V  + +SP   DG  L + S D +  + + ETG+ + T +GH G V      A+ 
Sbjct: 7   GHTGGVTCVAFSP---DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADG 63

Query: 74  LFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLN 132
            + ASGS+D T +LWD  TG+   +   H   V + AFS D  +L +   +K ++++D+ 
Sbjct: 64  TYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE 123

Query: 133 RPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVT 191
                   +   +  + +VA+      + SS  D G ++LWD R+GK V TL      V 
Sbjct: 124 TGK-CLTTLRGHTDWVNSVAFSPDGTFVASSSQD-GTIKLWDLRTGKCVATLTGHTGEVN 181

Query: 192 SAEVSRDG-RYITTADGSSVKFWDAN---HFGLVKGYNMPCNTESASLEPKLGNIFIAGG 247
           S   S DG + ++++   ++K WD +     G ++G+    N  S +  P  G +  +G 
Sbjct: 182 SVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVN--SVAFSPD-GYLLASGS 238

Query: 248 EDMWVHVFDFHTGEQIAI 265
           ED  + V+D  TGE +  
Sbjct: 239 EDGTIRVWDLRTGECVQT 256

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  119 bits (301), Expect = 2e-32
 Identities = 69/252 (27%), Positives = 112/252 (44%), Gaps = 20/252 (7%)

Query: 14  GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA 73
           GH+ PV D+  S    DG +L S S D +  L + ETG+ + T  GH   V S     + 
Sbjct: 49  GHTGPVRDVAASA---DGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDG 105

Query: 74  LFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLN 132
              +S S D T K+WD  TG    +   H   V + AFS D   + +   +  ++++DL 
Sbjct: 106 RILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR 165

Query: 133 RPDAPPREVGNSSG---SIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS- 188
                 + V   +G    + +VA+    + +LSS +D G ++LWD  +GK + TL     
Sbjct: 166 ----TGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSD-GTIKLWDLSTGKCLGTLRGHEN 220

Query: 189 PVTSAEVSRDGRYITTADG-SSVKFWDANHFGLVK---GYNMPCNTESASLEPKLGNIFI 244
            V S   S DG  + +     +++ WD      V+   G+       S +  P  G    
Sbjct: 221 GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVT--SLAWSPD-GKRLA 277

Query: 245 AGGEDMWVHVFD 256
           +G  D  + ++D
Sbjct: 278 SGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  117 bits (294), Expect = 2e-31
 Identities = 59/217 (27%), Positives = 97/217 (44%), Gaps = 11/217 (5%)

Query: 54  IGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSE 112
             T +GH G V       +    A+GS D T K+WD  TG+   + + H   VR  A S 
Sbjct: 2   RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA 61

Query: 113 DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRL 172
           D   L +G  +K +R++DL       R +   +  + +VA+   D  ILSS +    +++
Sbjct: 62  DGTYLASGSSDKTIRLWDLETG-ECVRTLTGHTSYVSSVAF-SPDGRILSSSSRDKTIKV 119

Query: 173 WDARSGKIVQTLET-KSPVTSAEVSRDGRYITTADG-SSVKFWDANHFGLVK---GYNMP 227
           WD  +GK + TL      V S   S DG ++ ++    ++K WD      V    G+   
Sbjct: 120 WDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGE 179

Query: 228 CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIA 264
            N  S +  P  G   ++   D  + ++D  TG+ + 
Sbjct: 180 VN--SVAFSPD-GEKLLSSSSDGTIKLWDLSTGKCLG 213

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  113 bits (284), Expect = 7e-30
 Identities = 64/205 (31%), Positives = 101/205 (49%), Gaps = 8/205 (3%)

Query: 13  HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN 72
            GH+  V  + +SP   DG  L S+S+D +  + + ETG  + T  GH   V S     +
Sbjct: 90  TGHTSYVSSVAFSP---DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPD 146

Query: 73  ALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDL 131
             F AS S D T KLWD  TG    +   H   V + AFS D   LL+   +  ++++DL
Sbjct: 147 GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDL 206

Query: 132 NRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE-TKSPV 190
                    +      + +VA+   D  +L+S ++ G +R+WD R+G+ VQTL    + V
Sbjct: 207 -STGKCLGTLRGHENGVNSVAF-SPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSV 264

Query: 191 TSAEVSRDGRY-ITTADGSSVKFWD 214
           TS   S DG+   + +   +++ WD
Sbjct: 265 TSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 98.9 bits (247), Expect = 2e-24
 Identities = 53/165 (32%), Positives = 84/165 (50%), Gaps = 6/165 (3%)

Query: 11  VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLD 70
              GH+  V  + +SP   DG F+ S+S+D +  L +  TG  + T  GH G V S    
Sbjct: 130 TLRGHTDWVNSVAFSP---DGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFS 186

Query: 71  ANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIF 129
            +     S S+D T KLWD  TG    +   H++ V + AFS D +LL +G  +  +R++
Sbjct: 187 PDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVW 246

Query: 130 DLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
           DL R     + +   + S+ ++AW   D   L+S +  G +R+WD
Sbjct: 247 DL-RTGECVQTLSGHTNSVTSLAW-SPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 92.5 bits (228), Expect = 2e-21
 Identities = 72/261 (27%), Positives = 120/261 (45%), Gaps = 8/261 (3%)

Query: 13  HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWI-GTFEGHKGAVWSCCLDA 71
            GH+ PV  L +SP    G  + S S D +  L +  TG  +  T  GH  +V S     
Sbjct: 195 AGHTDPVSSLAFSPD--GGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPD 252

Query: 72  NALFSASGSADFTAKLWDALTGDE--KHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIF 129
            +L  ASGS+D T +LWD  +     +    H   V + AFS D  LL +G  +  +R++
Sbjct: 253 GSLL-ASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLW 311

Query: 130 DLNRPD-APPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS 188
           DL          +    G + ++++      ++S  +D G +RLWD R+GK ++TLE  S
Sbjct: 312 DLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS 371

Query: 189 PVTSAEVSRDGRYITTADGS-SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGG 247
            V S   S DGR +++     +V+ WD +   L++  +   +  ++      G    +G 
Sbjct: 372 NVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGS 431

Query: 248 EDMWVHVFDFHTGEQIAITSS 268
            D  + ++D  T  +    S 
Sbjct: 432 SDNTIRLWDLKTSLKSVSFSP 452

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 77.8 bits (190), Expect = 3e-16
 Identities = 49/216 (22%), Positives = 94/216 (43%), Gaps = 9/216 (4%)

Query: 56  TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEK---HSFEHKHIVRACAF-- 110
              GH+ ++ S     +     SGS+D T KLWD   G++        H   V   A   
Sbjct: 60  LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSS 119

Query: 111 -SEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG 169
              ++ LL +   +  ++++DL+ P    R +   S S+ ++A+    + + S  +  G 
Sbjct: 120 PDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGT 179

Query: 170 VRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYITT--ADGSSVKFWDANHFGLVKGYNM 226
           ++LWD R+GK + TL     PV+S   S DG  +    +   +++ WD +   L++    
Sbjct: 180 IKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLS 239

Query: 227 PCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ 262
             +    S     G++  +G  D  + ++D  +   
Sbjct: 240 GHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSS 275

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 68.6 bits (166), Expect = 3e-13
 Identities = 71/272 (26%), Positives = 110/272 (40%), Gaps = 12/272 (4%)

Query: 2   DKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW-IGTFEGH 60
           D  +  +  +   H   V  L  S    +   L S+S D +  L +  T    I T EGH
Sbjct: 95  DNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGH 154

Query: 61  KGAVWSCCLDANALFSASGS-ADFTAKLWDALTGDEKHSFE-HKHIVRACAFSED-THLL 117
             +V S     +    ASGS  D T KLWD  TG    +   H   V + AFS D   L+
Sbjct: 155 SESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLI 214

Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
            +G  +  +R++DL+        +   S S   V+    D ++L+S +  G +RLWD RS
Sbjct: 215 ASGSSDGTIRLWDLSTGKLLRSTLSGHSDS--VVSSFSPDGSLLASGSSDGTIRLWDLRS 272

Query: 178 GK--IVQTLETKSPVTSAEVSRDGRYITTA-DGSSVKFWDANH---FGLVKGYNMPCNTE 231
               +       S V S   S DG+ + +     +V+ WD         +          
Sbjct: 273 SSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVS 332

Query: 232 SASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
           S S  P    +   G +D  + ++D  TG+ +
Sbjct: 333 SLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPL 364

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 62.4 bits (150), Expect = 4e-11
 Identities = 50/181 (27%), Positives = 84/181 (46%), Gaps = 8/181 (4%)

Query: 14  GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIG--TFEGHKGAVWSC-CLD 70
           GHS  V+ + +SP   DG  L S S D +  L + ETG  +   T +GH+G V S     
Sbjct: 282 GHSSSVLSVAFSP---DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSP 338

Query: 71  ANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFD 130
             +L  + GS D T +LWD  TG    + E    V + +FS D  ++ +G  +  +R++D
Sbjct: 339 DGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWD 398

Query: 131 LNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPV 190
           L+      R +   +  + ++ +   D   L+S +    +RLWD ++     +      V
Sbjct: 399 LSTGS-LLRNLDGHTSRVTSLDF-SPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPDGKV 456

Query: 191 T 191
            
Sbjct: 457 L 457

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 41.2 bits (97), Expect = 1e-05
 Identities = 14/36 (38%), Positives = 19/36 (52%)

Query: 54 IGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD 89
          + T +GH G V S     +    ASGS D T ++WD
Sbjct: 4  LRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 39.6 bits (93), Expect = 4e-05
 Identities = 17/40 (42%), Positives = 23/40 (57%)

Query: 50 TGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD 89
          +G+ + T +GH G V S     +  + ASGS D T KLWD
Sbjct: 1  SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 38.1 bits (88), Expect = 0.004
 Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 4/117 (3%)

Query: 60  HKGAVWSCCLD-ANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDT-HLL 117
           H+  VWS     A+    ASGS D + KLW    G    + + K  +    F  ++   L
Sbjct: 574 HEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSL 633

Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
             G  +  +  +DL  P  P   +   S ++  V ++ S  T++SS TD+  ++LWD
Sbjct: 634 AFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDS-STLVSSSTDN-TLKLWD 688

Length = 793

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	268
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
PTZ00421	493	coronin; Provisional	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.98
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.98
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.98
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.98
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
PTZ00420	568	coronin; Provisional	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.97
PTZ00420	568	coronin; Provisional	99.97
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.97
KOG0289	506	consensus mRNA splicing factor [General function p	99.97
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.97
KOG0296	399	consensus Angio-associated migratory cell protein	99.97
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.96
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.96
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.96
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.96
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.96
KOG0289	506	consensus mRNA splicing factor [General function p	99.96
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.96
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.96
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.96
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.96
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.95
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.95
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.95
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.95
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.95
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.95
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.95
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.95
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.95
KOG0641	350	consensus WD40 repeat protein [General function pr	99.95
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.95
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.95
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.95
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.94
KOG4328	498	consensus WD40 protein [Function unknown]	99.94
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.94
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.94
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.94
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.94
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.93
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.93
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.93
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.93
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.93
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.92
KOG0267	825	consensus Microtubule severing protein katanin p80	99.92
KOG0641	350	consensus WD40 repeat protein [General function pr	99.92
KOG1274	933	consensus WD40 repeat protein [General function pr	99.92
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.92
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.92
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.92
KOG1273	405	consensus WD40 repeat protein [General function pr	99.92
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.92
KOG0267	825	consensus Microtubule severing protein katanin p80	99.91
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.91
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.91
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.91
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.91
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.91
KOG0643	327	consensus Translation initiation factor 3, subunit	99.9
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.9
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.89
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.89
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.89
KOG0646	476	consensus WD40 repeat protein [General function pr	99.89
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.89
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.88
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.88
KOG0646	476	consensus WD40 repeat protein [General function pr	99.88
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.88
KOG2096	420	consensus WD40 repeat protein [General function pr	99.88
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.88
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.88
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.88
KOG2055	514	consensus WD40 repeat protein [General function pr	99.88
KOG0639	705	consensus Transducin-like enhancer of split protei	99.88
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.87
KOG2048	691	consensus WD40 repeat protein [General function pr	99.87
KOG0639	705	consensus Transducin-like enhancer of split protei	99.87
KOG4328	498	consensus WD40 protein [Function unknown]	99.87
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.86
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.86
KOG0649	325	consensus WD40 repeat protein [General function pr	99.85
KOG1539	910	consensus WD repeat protein [General function pred	99.85
KOG1188	376	consensus WD40 repeat protein [General function pr	99.85
KOG2048	691	consensus WD40 repeat protein [General function pr	99.84
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.84
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.84
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.84
KOG1274	933	consensus WD40 repeat protein [General function pr	99.84
KOG1539	910	consensus WD repeat protein [General function pred	99.84
COG2319	466	FOG: WD40 repeat [General function prediction only	99.84
COG2319	466	FOG: WD40 repeat [General function prediction only	99.84
KOG1273	405	consensus WD40 repeat protein [General function pr	99.83
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.83
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.82
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.82
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.81
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.81
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.81
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.81
KOG2096	420	consensus WD40 repeat protein [General function pr	99.81
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.81
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.81
KOG1310	758	consensus WD40 repeat protein [General function pr	99.8
KOG2055	514	consensus WD40 repeat protein [General function pr	99.8
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.79
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.79
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.79
KOG4227	609	consensus WD40 repeat protein [General function pr	99.79
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.79
PRK01742	429	tolB translocation protein TolB; Provisional	99.78
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.77
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.76
PRK11028	330	6-phosphogluconolactonase; Provisional	99.75
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.73
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.72
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.72
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.71
PRK11028	330	6-phosphogluconolactonase; Provisional	99.71
PRK01742	429	tolB translocation protein TolB; Provisional	99.7
KOG1963	792	consensus WD40 repeat protein [General function pr	99.7
KOG1310	758	consensus WD40 repeat protein [General function pr	99.7
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.7
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.7
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.69
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.69
KOG1963	792	consensus WD40 repeat protein [General function pr	99.69
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.68
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.67
PRK05137	435	tolB translocation protein TolB; Provisional	99.67
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.67
KOG1334	559	consensus WD40 repeat protein [General function pr	99.66
PRK02889	427	tolB translocation protein TolB; Provisional	99.66
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.65
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.65
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.64
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.63
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.63
PRK04922	433	tolB translocation protein TolB; Provisional	99.63
PRK05137	435	tolB translocation protein TolB; Provisional	99.62
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.62
PRK04922	433	tolB translocation protein TolB; Provisional	99.62
PRK03629	429	tolB translocation protein TolB; Provisional	99.62
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.62
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.61
KOG0649	325	consensus WD40 repeat protein [General function pr	99.6
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.6
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.6
PRK03629	429	tolB translocation protein TolB; Provisional	99.6
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.59
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.58
PRK02889	427	tolB translocation protein TolB; Provisional	99.58
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.58
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.57
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.57
KOG2139	445	consensus WD40 repeat protein [General function pr	99.56
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.55
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.53
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.53
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.52
KOG1188	376	consensus WD40 repeat protein [General function pr	99.52
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.51
KOG2321	703	consensus WD40 repeat protein [General function pr	99.5
KOG4227	609	consensus WD40 repeat protein [General function pr	99.49
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.48
KOG2321	703	consensus WD40 repeat protein [General function pr	99.48
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.46
PRK00178	430	tolB translocation protein TolB; Provisional	99.44
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.43
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.43
PRK00178	430	tolB translocation protein TolB; Provisional	99.41
KOG1334	559	consensus WD40 repeat protein [General function pr	99.41
PRK01029	428	tolB translocation protein TolB; Provisional	99.4
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.39
PRK04792	448	tolB translocation protein TolB; Provisional	99.39
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.38
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.38
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.38
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.38
PRK04792	448	tolB translocation protein TolB; Provisional	99.37
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.37
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.35
KOG2139	445	consensus WD40 repeat protein [General function pr	99.35
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.34
PRK01029	428	tolB translocation protein TolB; Provisional	99.33
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.32
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.3
KOG4547	541	consensus WD40 repeat-containing protein [General	99.29
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.28
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.28
KOG2315	566	consensus Predicted translation initiation factor	99.26
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.24
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.24
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.23
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.19
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.18
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.16
KOG4547	541	consensus WD40 repeat-containing protein [General	99.14
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.13
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.12
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.1
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.09
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.08
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	99.08
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.08
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.08
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.06
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.04
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.04
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.03
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.03
KOG2315	566	consensus Predicted translation initiation factor	99.03
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.01
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	99.0
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.99
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.99
KOG2695	425	consensus WD40 repeat protein [General function pr	98.94
PRK04043	419	tolB translocation protein TolB; Provisional	98.93
KOG2695	425	consensus WD40 repeat protein [General function pr	98.87
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.84
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.84
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.83
PRK04043	419	tolB translocation protein TolB; Provisional	98.81
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.77
COG4946	668	Uncharacterized protein related to the periplasmic	98.77
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.77
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.77
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.76
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.73
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.72
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.71
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.71
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.7
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.7
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.68
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.67
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.64
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.63
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.61
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.6
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.59
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.57
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.54
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.5
KOG2314	698	consensus Translation initiation factor 3, subunit	98.45
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.45
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.44
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.44
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.43
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.43
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.43
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.43
KOG2314	698	consensus Translation initiation factor 3, subunit	98.41
COG4946	668	Uncharacterized protein related to the periplasmic	98.4
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.35
KOG3621	726	consensus WD40 repeat-containing protein [General	98.34
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.34
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.32
PRK02888	635	nitrous-oxide reductase; Validated	98.25
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.24
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.19
PRK02888	635	nitrous-oxide reductase; Validated	98.18
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.13
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.12
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.1
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.09
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.08
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.05
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.03
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.98
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.95
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.9
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.85
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.77
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.76
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.74
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.7
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.68
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.65
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.61
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.56
PHA02713	557	hypothetical protein; Provisional	97.52
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.51
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.51
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.5
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.46
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.45
COG3391	381	Uncharacterized conserved protein [Function unknow	97.45
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.42
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.41
KOG3621	726	consensus WD40 repeat-containing protein [General	97.39
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.38
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.33
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.32
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.3
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.22
KOG2395	644	consensus Protein involved in vacuole import and d	97.2
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.18
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.17
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.1
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.04
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.02
COG3391	381	Uncharacterized conserved protein [Function unknow	96.98
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.91
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.87
PRK13616	591	lipoprotein LpqB; Provisional	96.83
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.81
PRK13616	591	lipoprotein LpqB; Provisional	96.8
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.77
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.74
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.43
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.42
KOG2444	238	consensus WD40 repeat protein [General function pr	96.41
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	96.37
KOG2395	644	consensus Protein involved in vacuole import and d	96.27
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.12
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.1
KOG2444	238	consensus WD40 repeat protein [General function pr	96.09
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.07
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	96.03
COG5167	776	VID27 Protein involved in vacuole import and degra	96.01
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	95.91
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.75
PHA02713	557	hypothetical protein; Provisional	95.66
PHA03098	534	kelch-like protein; Provisional	95.58
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.58
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	95.58
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.57
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.42
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.21
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.08
PHA02790	480	Kelch-like protein; Provisional	94.99
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	94.95
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	94.65
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	94.62
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	94.53
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	94.3
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	94.21
KOG2377	657	consensus Uncharacterized conserved protein [Funct	94.18
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	93.96
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.85
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	93.8
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	93.8
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	93.59
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	93.47
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	93.34
PHA02790	480	Kelch-like protein; Provisional	93.31
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	93.05
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.03
PHA03098	534	kelch-like protein; Provisional	93.0
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	92.99
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	92.82
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	92.55
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	92.41
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	92.31
PRK10115	686	protease 2; Provisional	92.24
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	92.19
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	92.08
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	91.88
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	91.86
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	91.82
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	91.66
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	90.45
COG5167	776	VID27 Protein involved in vacuole import and degra	90.43
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	90.04
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	89.5
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	89.26
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	88.94
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	88.94
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	88.47
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	88.4
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	88.23
COG1520	370	FOG: WD40-like repeat [Function unknown]	87.71
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	87.67
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	87.22
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	86.93
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	86.59
PLN00033	398	photosystem II stability/assembly factor; Provisio	86.46
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	85.66
COG4590	733	ABC-type uncharacterized transport system, permeas	85.05
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	84.87
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	84.85
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	84.76
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	84.43
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	84.33
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	84.12
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	83.79
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	83.48
PRK13684	334	Ycf48-like protein; Provisional	82.85
PRK10115	686	protease 2; Provisional	82.47
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	82.33
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	81.16
PRK13684	334	Ycf48-like protein; Provisional	80.58

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=2.3e-49  Score=302.20  Aligned_cols=261  Identities=67%  Similarity=1.118  Sum_probs=248.4

Q ss_pred             ceeeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCC
Q 024372            4 RKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADF   83 (268)
Q Consensus         4 ~~~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~   83 (268)
                      .+..-|++|+||+.||..++|+|++|+|..|++++.|+.-.+.+.++|.++.+|.||++.|+.++...+-...||++.|-
T Consensus         2 ~~~~~pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadf   81 (334)
T KOG0278|consen    2 AMRQTPLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADF   81 (334)
T ss_pred             CcccCceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccc
Confidence            45678999999999999999999999999999999999999999999999999999999999999998888889999999


Q ss_pred             cEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEE
Q 024372           84 TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS  163 (268)
Q Consensus        84 ~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  163 (268)
                      +.++||..++..++.++|++.|+.++|+.|.+.|++|+.++.+|+||++.++.++.++.+|.+.|..+.|++.+..++++
T Consensus        82 takvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSS  161 (334)
T KOG0278|consen   82 TAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSS  161 (334)
T ss_pred             hhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEee
Confidence            99999999999999999999999999999999999999999999999999988889999999999999999988776655


Q ss_pred             eeCCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEE
Q 024372          164 CTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIF  243 (268)
Q Consensus       164 ~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (268)
                       ++|++||+||.|++..++.++...+|.++.++++|+++..+.++.|.+||..++++++.|..|+++.+..+.|+ ...|
T Consensus       162 -add~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~-k~~f  239 (334)
T KOG0278|consen  162 -ADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPK-KEFF  239 (334)
T ss_pred             -ccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccCC-CceE
Confidence             78899999999999999999999999999999999999999999999999999999999999999999999985 6999


Q ss_pred             EeccCCCeEEEEECCCCcEEeec
Q 024372          244 IAGGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       244 ~~gs~d~~i~~wd~~~g~~~~~~  266 (268)
                      ++|++|+.++.||..||+++..+
T Consensus       240 VaGged~~~~kfDy~TgeEi~~~  262 (334)
T KOG0278|consen  240 VAGGEDFKVYKFDYNTGEEIGSY  262 (334)
T ss_pred             EecCcceEEEEEeccCCceeeec
Confidence            99999999999999999998764

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=6e-43  Score=283.82  Aligned_cols=247  Identities=21%  Similarity=0.295  Sum_probs=217.4

Q ss_pred             ecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCC--CcEEEEeeCCCcEEEEeCC
Q 024372           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN--ALFSASGSADFTAKLWDAL   91 (268)
Q Consensus        14 ~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~--~~~l~s~s~D~~v~iw~~~   91 (268)
                      |-+.||..+.|++   |+..|||||.+|.+++|+..+...+.+|.||++.|.++.|+|.  +..+|||+.||++++|++.
T Consensus       173 gd~rPis~~~fS~---ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~  249 (459)
T KOG0272|consen  173 GDTRPISGCSFSR---DSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS  249 (459)
T ss_pred             cCCCcceeeEeec---CCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence            7789999999985   8999999999999999999999999999999999999999997  4578999999999999998


Q ss_pred             CCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeE
Q 024372           92 TGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (268)
Q Consensus        92 ~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i  170 (268)
                      +..++..+. |...|..++|+|+|++|+|+++|.+-++||+++....... .+|...|.+++|.++| .++++|+-|..=
T Consensus       250 ~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~Q-EGHs~~v~~iaf~~DG-SL~~tGGlD~~~  327 (459)
T KOG0272|consen  250 QETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQ-EGHSKGVFSIAFQPDG-SLAATGGLDSLG  327 (459)
T ss_pred             CCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhh-cccccccceeEecCCC-ceeeccCccchh
Confidence            877777775 7888999999999999999999999999999876544443 3566789999998766 577788888999


Q ss_pred             EEEeCCCCceEEeecCC-CCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCCCc-eeeEEcCCCCCEEEecc
Q 024372          171 RLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNT-ESASLEPKLGNIFIAGG  247 (268)
Q Consensus       171 ~iwd~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~gs  247 (268)
                      ||||+|+|+++-.+..| .+|.+++|+|+|-.+++ ++|+++++||++...++.++..+.+. ..+.+.|..|.+|+|+|
T Consensus       328 RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tas  407 (459)
T KOG0272|consen  328 RVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTAS  407 (459)
T ss_pred             heeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcc
Confidence            99999999999999865 56999999999988876 46899999999998888777776664 45677777899999999


Q ss_pred             CCCeEEEEECCCCcEEee
Q 024372          248 EDMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       248 ~d~~i~~wd~~~g~~~~~  265 (268)
                      .|+++++|...+.+++..
T Consensus       408 yD~t~kiWs~~~~~~~ks  425 (459)
T KOG0272|consen  408 YDNTVKIWSTRTWSPLKS  425 (459)
T ss_pred             cCcceeeecCCCcccchh
Confidence            999999999988887765

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-42  Score=279.45  Aligned_cols=245  Identities=26%  Similarity=0.395  Sum_probs=207.0

Q ss_pred             eeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCC
Q 024372           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL   91 (268)
Q Consensus        12 ~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~   91 (268)
                      +.||.++|.++.|+|   +|.+|++|+.|.++|+||..+.....+.++|+..|.+++|+||+..||||+.||+|++||..
T Consensus       111 ~~GH~e~Vl~~~fsp---~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpk  187 (480)
T KOG0271|consen  111 IAGHGEAVLSVQFSP---TGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPK  187 (480)
T ss_pred             cCCCCCcEEEEEecC---CCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCC
Confidence            469999999999996   89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeeee-e-ccCCeEEEEEECC-----CCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEe
Q 024372           92 TGDEKHS-F-EHKHIVRACAFSE-----DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC  164 (268)
Q Consensus        92 ~~~~~~~-~-~~~~~v~~v~~~~-----~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  164 (268)
                      ++++.-. + .|+..|.+++|.|     ..+.|++++.||.+++||+..+. .......|..+|+|+.|-  ++.++.++
T Consensus       188 tg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~-~~~~lsgHT~~VTCvrwG--G~gliySg  264 (480)
T KOG0271|consen  188 TGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT-CVRTLSGHTASVTCVRWG--GEGLIYSG  264 (480)
T ss_pred             CCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce-EEEEeccCccceEEEEEc--CCceEEec
Confidence            8886543 3 4889999999976     46799999999999999987543 345567889999999984  34578888


Q ss_pred             eCCCeEEEEeCCCCceEEeecCC---------------------------------------------------------
Q 024372          165 TDSGGVRLWDARSGKIVQTLETK---------------------------------------------------------  187 (268)
Q Consensus       165 ~~d~~i~iwd~~~~~~~~~~~~~---------------------------------------------------------  187 (268)
                      +.|++||+|+...|.+.+++.+|                                                         
T Consensus       265 S~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsD  344 (480)
T KOG0271|consen  265 SQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSD  344 (480)
T ss_pred             CCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecC
Confidence            99999999987655433222211                                                         


Q ss_pred             -----------------------CCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeCCCC-ceeeEEcCCCCCE
Q 024372          188 -----------------------SPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCN-TESASLEPKLGNI  242 (268)
Q Consensus       188 -----------------------~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  242 (268)
                                             .-|+.+.||||+++++++ -|..|++||.++++-+.+|..+.. +..++++. +.++
T Consensus       345 d~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa-DsRL  423 (480)
T KOG0271|consen  345 DFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA-DSRL  423 (480)
T ss_pred             CceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc-CccE
Confidence                                   247889999999999875 599999999999988888886554 45666666 6899


Q ss_pred             EEeccCCCeEEEEECCCCcEE
Q 024372          243 FIAGGEDMWVHVFDFHTGEQI  263 (268)
Q Consensus       243 ~~~gs~d~~i~~wd~~~g~~~  263 (268)
                      +++||.|.++++||+++.++.
T Consensus       424 lVS~SkDsTLKvw~V~tkKl~  444 (480)
T KOG0271|consen  424 LVSGSKDSTLKVWDVRTKKLK  444 (480)
T ss_pred             EEEcCCCceEEEEEeeeeeec
Confidence            999999999999999876653

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=4.4e-43  Score=284.60  Aligned_cols=248  Identities=22%  Similarity=0.302  Sum_probs=218.5

Q ss_pred             eeeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCc
Q 024372            5 KVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFT   84 (268)
Q Consensus         5 ~~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~   84 (268)
                      .++....|.||++.|.++.|+|.. ++..||||+.||++++|+.++-+.+..|.+|...|..++|+|+|++|+|++.|.+
T Consensus       206 ~~~~~~~l~gH~~~v~~~~fhP~~-~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~t  284 (459)
T KOG0272|consen  206 QCNLLQTLRGHTSRVGAAVFHPVD-SDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDST  284 (459)
T ss_pred             CcceeEEEeccccceeeEEEccCC-CccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccc
Confidence            345566778999999999999964 4678999999999999999988999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCeeeee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEE
Q 024372           85 AKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS  163 (268)
Q Consensus        85 v~iw~~~~~~~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  163 (268)
                      .|+||+.++...... .|...|.+++|+|||.+++||+.|..-++||++++... ..+..|..+|..++|+|+|. .+++
T Consensus       285 WRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~i-m~L~gH~k~I~~V~fsPNGy-~lAT  362 (459)
T KOG0272|consen  285 WRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCI-MFLAGHIKEILSVAFSPNGY-HLAT  362 (459)
T ss_pred             hhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEE-EEecccccceeeEeECCCce-EEee
Confidence            999999998876555 48899999999999999999999999999999988654 34445888999999999775 5667


Q ss_pred             eeCCCeEEEEeCCCCceEEeecCCC-CEEEEEECC-CCcEEEE-eCCCeEEEEeCCCceeeeEEeCCCC-ceeeEEcCCC
Q 024372          164 CTDSGGVRLWDARSGKIVQTLETKS-PVTSAEVSR-DGRYITT-ADGSSVKFWDANHFGLVKGYNMPCN-TESASLEPKL  239 (268)
Q Consensus       164 ~~~d~~i~iwd~~~~~~~~~~~~~~-~v~~~~~s~-~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~  239 (268)
                      |+.|++++|||+|..++++++..|. -|..+.|+| .|.||++ +.|.++++|..+++.+++....+.. +.++++.+ +
T Consensus       363 gs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~-d  441 (459)
T KOG0272|consen  363 GSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISP-D  441 (459)
T ss_pred             cCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEecc-C
Confidence            7888999999999999999998665 489999999 5777765 5799999999999999999988765 56777777 6


Q ss_pred             CCEEEeccCCCeEEEEE
Q 024372          240 GNIFIAGGEDMWVHVFD  256 (268)
Q Consensus       240 ~~~~~~gs~d~~i~~wd  256 (268)
                      +++++++|.|+++++|.
T Consensus       442 ~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  442 SQAIATSSFDRTIKLWR  458 (459)
T ss_pred             CceEEEeccCceeeecc
Confidence            99999999999999995

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=3.2e-41  Score=260.99  Aligned_cols=251  Identities=27%  Similarity=0.383  Sum_probs=213.6

Q ss_pred             CcceeeecEE-eeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEee
Q 024372            2 DKRKVAVPLV-CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS   80 (268)
Q Consensus         2 ~~~~~~~~~~-~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s   80 (268)
                      |+.++.+|+- +.||++.|..+..+   +||++.+++|.|+++++||..+|+..+.|.||...|.+++|++|++.++|||
T Consensus        48 dd~~~G~~~r~~~GHsH~v~dv~~s---~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGS  124 (315)
T KOG0279|consen   48 DDIKYGVPVRRLTGHSHFVSDVVLS---SDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGS  124 (315)
T ss_pred             CccccCceeeeeeccceEecceEEc---cCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCC
Confidence            4456666554 46999999999998   4999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEeCCCCCeeeeecc--CCeEEEEEECCC--CCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCC
Q 024372           81 ADFTAKLWDALTGDEKHSFEH--KHIVRACAFSED--THLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHS  156 (268)
Q Consensus        81 ~D~~v~iw~~~~~~~~~~~~~--~~~v~~v~~~~~--~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~  156 (268)
                      +|+++++|+..........+.  .+-|.|+.|+|+  ..+++++++|+++|+||++.-+. .+.+..|++.++.+.++|+
T Consensus       125 rDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l-~~~~~gh~~~v~t~~vSpD  203 (315)
T KOG0279|consen  125 RDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL-RTTFIGHSGYVNTVTVSPD  203 (315)
T ss_pred             CcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch-hhccccccccEEEEEECCC
Confidence            999999999976554444443  678999999997  78999999999999999986543 3455578899999999987


Q ss_pred             CCcEEEEeeCCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEeC----C-----
Q 024372          157 DQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNM----P-----  227 (268)
Q Consensus       157 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~----~-----  227 (268)
                      + .++++|+.||.+.+||++.+++++.+++...|++++|+|+.-.|..+.+..|+|||++...++..+..    +     
T Consensus       204 G-slcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~  282 (315)
T KOG0279|consen  204 G-SLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAG  282 (315)
T ss_pred             C-CEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccC
Confidence            6 57788899999999999999999999999999999999998777777777899999998877766643    1     


Q ss_pred             C-CceeeEEcCCCCCEEEeccCCCeEEEEECC
Q 024372          228 C-NTESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (268)
Q Consensus       228 ~-~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~  258 (268)
                      . ...++++++ +|..|.+|-.|+.|++|.+.
T Consensus       283 ~~~clslaws~-dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  283 DPICLSLAWSA-DGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             CcEEEEEEEcC-CCcEEEeeecCCcEEEEEee
Confidence            1 123555665 79999999999999999874

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.9e-40  Score=256.80  Aligned_cols=251  Identities=21%  Similarity=0.297  Sum_probs=213.2

Q ss_pred             EeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCC-----CCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcE
Q 024372           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGE-----TGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTA   85 (268)
Q Consensus        11 ~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~-----~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v   85 (268)
                      .+.+|++.|.+++-.+.  +-+.|+++++|+++.+|++.     .|..++.|.||+..|..+..++|+.+++|+|+|+++
T Consensus        10 tl~gh~d~Vt~la~~~~--~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~l   87 (315)
T KOG0279|consen   10 TLEGHTDWVTALAIKIK--NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTL   87 (315)
T ss_pred             eecCCCceEEEEEeecC--CCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceE
Confidence            45699999999999875  34689999999999999654     466789999999999999999999999999999999


Q ss_pred             EEEeCCCCCeeeee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecC-CcccEEEEEEeCCC-CcEEE
Q 024372           86 KLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN-SSGSIRTVAWLHSD-QTILS  162 (268)
Q Consensus        86 ~iw~~~~~~~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~-~~~~~  162 (268)
                      |+||+.+++..+.| .|..-|.+++|++|...+++|+.|++|++|+.-. ......... +.+.|+|+.|+|.. ..+++
T Consensus        88 rlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~Iv  166 (315)
T KOG0279|consen   88 RLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNPIIV  166 (315)
T ss_pred             EEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCcEEE
Confidence            99999999887766 5999999999999999999999999999999743 333333332 37899999999974 44677


Q ss_pred             EeeCCCeEEEEeCCCCceEEeecCC-CCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCC
Q 024372          163 SCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLG  240 (268)
Q Consensus       163 ~~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (268)
                      +++.|++||+||+++.+..+.+..+ ..++.+++||||.+.+++ .|+.+.+||++..+.+..+.....+.+++|.|  .
T Consensus       167 s~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fsp--n  244 (315)
T KOG0279|consen  167 SASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSP--N  244 (315)
T ss_pred             EccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecC--C
Confidence            7788899999999999988877654 559999999999998875 58999999999999988888877888888887  5


Q ss_pred             CEEEeccCCCeEEEEECCCCcEEeec
Q 024372          241 NIFIAGGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       241 ~~~~~gs~d~~i~~wd~~~g~~~~~~  266 (268)
                      ++.+++..+..|++||..++..+..+
T Consensus       245 rywL~~at~~sIkIwdl~~~~~v~~l  270 (315)
T KOG0279|consen  245 RYWLCAATATSIKIWDLESKAVVEEL  270 (315)
T ss_pred             ceeEeeccCCceEEEeccchhhhhhc
Confidence            66666666666999999988887664

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=4.6e-37  Score=239.43  Aligned_cols=252  Identities=23%  Similarity=0.362  Sum_probs=219.2

Q ss_pred             cEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEE
Q 024372            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLW   88 (268)
Q Consensus         9 ~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw   88 (268)
                      -++|.||.+.|.++.|+   +|.++|+++|.||.+.|||..+...++-+.-....|.+|+|+|.+.++|.|+-|...-||
T Consensus        48 rr~LkGH~~Ki~~~~ws---~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy  124 (343)
T KOG0286|consen   48 RRTLKGHLNKIYAMDWS---TDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIY  124 (343)
T ss_pred             EEEecccccceeeeEec---CCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEE
Confidence            36788999999999998   499999999999999999999988888888888999999999999999999999999999


Q ss_pred             eCCCCC------eeeee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEE
Q 024372           89 DALTGD------EKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTIL  161 (268)
Q Consensus        89 ~~~~~~------~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  161 (268)
                      ++.+.+      ..+.+ .|...+.++.|-+|+ .++|++.|.+.-+||++++. ..+.+..|.+.|.++++.|.+.+.+
T Consensus       125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~-~~~~f~GH~gDV~slsl~p~~~ntF  202 (343)
T KOG0286|consen  125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQ-QTQVFHGHTGDVMSLSLSPSDGNTF  202 (343)
T ss_pred             ecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccce-EEEEecCCcccEEEEecCCCCCCeE
Confidence            998552      22233 488999999998865 57799999999999999864 4577788999999999999778888


Q ss_pred             EEeeCCCeEEEEeCCCCceEEeecCC-CCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeC---CCCceeeEEc
Q 024372          162 SSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNM---PCNTESASLE  236 (268)
Q Consensus       162 ~~~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~---~~~~~~~~~~  236 (268)
                      ++|+-|+..+|||+|.+.++++|..| ..|+++.|.|+|.-+++ ++|+++|+||+|....+..|..   ..++.+++|+
T Consensus       203 vSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS  282 (343)
T KOG0286|consen  203 VSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFS  282 (343)
T ss_pred             EecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEc
Confidence            88888899999999999999999865 56999999999977765 5789999999999888888865   3456777777


Q ss_pred             CCCCCEEEeccCCCeEEEEECCCCcEEeec
Q 024372          237 PKLGNIFIAGGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       237 ~~~~~~~~~gs~d~~i~~wd~~~g~~~~~~  266 (268)
                      . +|++|.+|..|..+.+||.-.|+.+.++
T Consensus       283 ~-SGRlLfagy~d~~c~vWDtlk~e~vg~L  311 (343)
T KOG0286|consen  283 K-SGRLLFAGYDDFTCNVWDTLKGERVGVL  311 (343)
T ss_pred             c-cccEEEeeecCCceeEeeccccceEEEe
Confidence            6 7999999999999999999888877664

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.2e-37  Score=236.17  Aligned_cols=248  Identities=23%  Similarity=0.353  Sum_probs=213.0

Q ss_pred             EEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEe
Q 024372           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (268)
Q Consensus        10 ~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~   89 (268)
                      ..+..|+++|+++.|+   .||+|+++++.|+++++|++..|.+++++.+|...|..++.+.|+..+++|+.|+.+.+||
T Consensus        11 ~~l~~~qgaV~avryN---~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD   87 (307)
T KOG0316|consen   11 SILDCAQGAVRAVRYN---VDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD   87 (307)
T ss_pred             eeecccccceEEEEEc---cCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence            3456899999999998   5999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCC-CCeEecCCcccEEEEEEeCCCCcEEEEeeCC
Q 024372           90 ALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDA-PPREVGNSSGSIRTVAWLHSDQTILSSCTDS  167 (268)
Q Consensus        90 ~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d  167 (268)
                      +++++..+.+. |...|+.+.|+.+..++++|+.|..+++||-++... +.+.+....+.|.++...   ++.+++|+-|
T Consensus        88 V~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~---~heIvaGS~D  164 (307)
T KOG0316|consen   88 VNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA---EHEIVAGSVD  164 (307)
T ss_pred             cccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec---ccEEEeeccC
Confidence            99999999885 889999999999999999999999999999876543 345555667788888764   4567788888


Q ss_pred             CeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEE-EeCCCeEEEEeCCCceeeeEEeCCCCc-e--eeEEcCCCCCEE
Q 024372          168 GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYIT-TADGSSVKFWDANHFGLVKGYNMPCNT-E--SASLEPKLGNIF  243 (268)
Q Consensus       168 ~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~~~~~~v~~wd~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~  243 (268)
                      |++|.||+|.|+...-+.. .+++++.|+++++... ++=|.++|+-|..++++++.|..+.+. .  .+++. +....+
T Consensus       165 GtvRtydiR~G~l~sDy~g-~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~-qsdthV  242 (307)
T KOG0316|consen  165 GTVRTYDIRKGTLSSDYFG-HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLN-QSDTHV  242 (307)
T ss_pred             CcEEEEEeecceeehhhcC-CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeec-ccceeE
Confidence            9999999999987665544 5799999999999865 456899999999999999999875542 2  23333 357789


Q ss_pred             EeccCCCeEEEEECCCCcEEee
Q 024372          244 IAGGEDMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       244 ~~gs~d~~i~~wd~~~g~~~~~  265 (268)
                      ++||+||.|++||+..+.++.-
T Consensus       243 ~sgSEDG~Vy~wdLvd~~~~sk  264 (307)
T KOG0316|consen  243 FSGSEDGKVYFWDLVDETQISK  264 (307)
T ss_pred             EeccCCceEEEEEeccceeeee
Confidence            9999999999999987776543

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1e-37  Score=249.33  Aligned_cols=244  Identities=23%  Similarity=0.344  Sum_probs=214.4

Q ss_pred             cEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC-CCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEE
Q 024372            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKL   87 (268)
Q Consensus         9 ~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~-~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~i   87 (268)
                      -..+.||++.|.+++|+.   .|++||++|.|-.+++||..+ .++++.+.+|+..|.+++|-|.|.+++|+++|.+|+.
T Consensus       143 e~~LrGHt~sv~di~~~a---~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~  219 (406)
T KOG0295|consen  143 ERSLRGHTDSVFDISFDA---SGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKA  219 (406)
T ss_pred             hhhhhccccceeEEEEec---CccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeE
Confidence            345679999999999985   789999999999999999987 6788889999999999999999999999999999999


Q ss_pred             EeCCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCC---------
Q 024372           88 WDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSD---------  157 (268)
Q Consensus        88 w~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~---------  157 (268)
                      |++.++-++.++. |++.|+.+..+.||.++++++.|.++++|-+++.+.+ .....|+.+|.|++|.|..         
T Consensus       220 We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k-~~lR~hEh~vEci~wap~~~~~~i~~at  298 (406)
T KOG0295|consen  220 WECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCK-AELREHEHPVECIAWAPESSYPSISEAT  298 (406)
T ss_pred             EecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhh-hhhhccccceEEEEecccccCcchhhcc
Confidence            9999999999885 7888999999999999999999999999998875432 3445677789999986622         


Q ss_pred             -----CcEEEEeeCCCeEEEEeCCCCceEEeecCC-CCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCCCc
Q 024372          158 -----QTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNT  230 (268)
Q Consensus       158 -----~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~~~  230 (268)
                           ..++.+++.|++||+||+.++.|+-++..+ ..|..++|+|.|+||++ ++|+++++||+++..++++...+..+
T Consensus       299 ~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hf  378 (406)
T KOG0295|consen  299 GSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHF  378 (406)
T ss_pred             CCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcce
Confidence                 247888899999999999999999999765 56999999999999876 68899999999999999999988877


Q ss_pred             eeeEEcCCCCCEEEeccCCCeEEEEE
Q 024372          231 ESASLEPKLGNIFIAGGEDMWVHVFD  256 (268)
Q Consensus       231 ~~~~~~~~~~~~~~~gs~d~~i~~wd  256 (268)
                      ..+..++..-.++++|+-|..+++|.
T Consensus       379 vt~lDfh~~~p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  379 VTSLDFHKTAPYVVTGSVDQTVKVWE  404 (406)
T ss_pred             eEEEecCCCCceEEeccccceeeeee
Confidence            65555555677999999999999997

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.8e-37  Score=249.45  Aligned_cols=245  Identities=24%  Similarity=0.382  Sum_probs=207.6

Q ss_pred             cEEeeecCCCeeeEEEecCC--CCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEE
Q 024372            9 PLVCHGHSRPVVDLFYSPIT--PDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAK   86 (268)
Q Consensus         9 ~~~~~~h~~~v~~~~f~~~~--~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~   86 (268)
                      ...|.||...|++|+|.|..  |...+||++|.|++++|||+..+.++..+.||+.+|.++.|..++ +++|||.|++||
T Consensus       193 g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIk  271 (480)
T KOG0271|consen  193 GRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIK  271 (480)
T ss_pred             cccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEE
Confidence            44568999999999999844  778899999999999999999999999999999999999998766 679999999999


Q ss_pred             EEeCCCCCeeeeec-cCCeEEEEEEC-----------CCC-------------------------CEEEEeeCCCeEEEE
Q 024372           87 LWDALTGDEKHSFE-HKHIVRACAFS-----------EDT-------------------------HLLLTGGFEKILRIF  129 (268)
Q Consensus        87 iw~~~~~~~~~~~~-~~~~v~~v~~~-----------~~~-------------------------~~l~s~~~d~~i~~~  129 (268)
                      +|+...+.+.+.+. |.+.|+.++++           |.+                         ..+++|+.|.++.+|
T Consensus       272 vw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW  351 (480)
T KOG0271|consen  272 VWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLW  351 (480)
T ss_pred             EEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEe
Confidence            99999988777664 77777776655           323                         349999999999999


Q ss_pred             ECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCC-CCEEEEEECCCCcEEEEe-CC
Q 024372          130 DLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITTA-DG  207 (268)
Q Consensus       130 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~-~~  207 (268)
                      +......+......|+..|+.+.|+|++. ++++++.|+.||+||-++|+.+.+|.+| ..|+.++|+.|.++++++ .|
T Consensus       352 ~p~~~kkpi~rmtgHq~lVn~V~fSPd~r-~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkD  430 (480)
T KOG0271|consen  352 NPFKSKKPITRMTGHQALVNHVSFSPDGR-YIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKD  430 (480)
T ss_pred             cccccccchhhhhchhhheeeEEECCCcc-EEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCC
Confidence            97655555566678899999999999876 5566677799999999999999999855 669999999999998765 58


Q ss_pred             CeEEEEeCCCceeeeEEeCCC-CceeeEEcCCCCCEEEeccCCCeEEEEE
Q 024372          208 SSVKFWDANHFGLVKGYNMPC-NTESASLEPKLGNIFIAGGEDMWVHVFD  256 (268)
Q Consensus       208 ~~v~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gs~d~~i~~wd  256 (268)
                      .++++||+++.++...+..+. .+..+.+.| +|..+++|+.|+.+++|.
T Consensus       431 sTLKvw~V~tkKl~~DLpGh~DEVf~vDwsp-DG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  431 STLKVWDVRTKKLKQDLPGHADEVFAVDWSP-DGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             ceEEEEEeeeeeecccCCCCCceEEEEEecC-CCceeecCCCceEEEeec
Confidence            999999999877766666443 456777777 799999999999999995

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=5.7e-37  Score=265.77  Aligned_cols=240  Identities=25%  Similarity=0.370  Sum_probs=206.9

Q ss_pred             eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC-------------------------------CCeEEEeeCcc
Q 024372           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-------------------------------GDWIGTFEGHK   61 (268)
Q Consensus        13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~-------------------------------~~~~~~~~~h~   61 (268)
                      +.-...++++.|++   |+.+||.|-.|..|++|....                               ....+++.||+
T Consensus       375 ~nt~~~v~ca~fSd---dssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~  451 (707)
T KOG0263|consen  375 HNTYQGVTCAEFSD---DSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHS  451 (707)
T ss_pred             EEcCCcceeEeecC---CcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCC
Confidence            34556888999984   889999999999999997652                               11345688999


Q ss_pred             CcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeE
Q 024372           62 GAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE  140 (268)
Q Consensus        62 ~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~  140 (268)
                      ++|+.++|+|+.++|+|+|.|+++|+|.+.+..+.-.+. |..||..+.|+|.|-++||++.|++.++|..... .+.+.
T Consensus       452 GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~-~PlRi  530 (707)
T KOG0263|consen  452 GPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN-KPLRI  530 (707)
T ss_pred             CceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC-Cchhh
Confidence            999999999999999999999999999999988776664 8889999999999999999999999999987653 34566


Q ss_pred             ecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecC-CCCEEEEEECCCCcEEEEe-CCCeEEEEeCCCc
Q 024372          141 VGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHF  218 (268)
Q Consensus       141 ~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~  218 (268)
                      +-+|.+.+.|+.|.|+ .+++++|+.|+++|+||+.+|..++.|.+ +.+|.++++||+|++|+++ +|+.|++||+.++
T Consensus       531 faghlsDV~cv~FHPN-s~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~  609 (707)
T KOG0263|consen  531 FAGHLSDVDCVSFHPN-SNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANG  609 (707)
T ss_pred             hcccccccceEEECCc-ccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCC
Confidence            6678889999998765 56788889999999999999999999975 5779999999999999986 5899999999998


Q ss_pred             eeeeEEeCCCC-ceeeEEcCCCCCEEEeccCCCeEEEEECC
Q 024372          219 GLVKGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (268)
Q Consensus       219 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~gs~d~~i~~wd~~  258 (268)
                      +++..+..+.+ ..++.|+. +|..||+||.|..|++||+.
T Consensus       610 ~~v~~l~~Ht~ti~SlsFS~-dg~vLasgg~DnsV~lWD~~  649 (707)
T KOG0263|consen  610 SLVKQLKGHTGTIYSLSFSR-DGNVLASGGADNSVRLWDLT  649 (707)
T ss_pred             cchhhhhcccCceeEEEEec-CCCEEEecCCCCeEEEEEch
Confidence            88877765554 45677766 79999999999999999985

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=7.4e-38  Score=258.07  Aligned_cols=241  Identities=23%  Similarity=0.379  Sum_probs=208.9

Q ss_pred             eeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC-CCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeC
Q 024372           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA   90 (268)
Q Consensus        12 ~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~-~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~   90 (268)
                      ++||+..|+++.|.|.  .+.+|++++.|+.|+||++.. ++++++|.||..+|..++|++++..++|+|.|+.+++||+
T Consensus       210 ~~gH~kgvsai~~fp~--~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDt  287 (503)
T KOG0282|consen  210 LSGHTKGVSAIQWFPK--KGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDT  287 (503)
T ss_pred             ccCCccccchhhhccc--eeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeecc
Confidence            3699999999999984  688999999999999999987 8999999999999999999999999999999999999999


Q ss_pred             CCCCeeeeeccCCeEEEEEECCCC-CEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCe
Q 024372           91 LTGDEKHSFEHKHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG  169 (268)
Q Consensus        91 ~~~~~~~~~~~~~~v~~v~~~~~~-~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~  169 (268)
                      ++|++...+.....+.|+.|+|++ +.+++|+.|+.|+.||+++++ ..++...|-+.+..+.|.+.+..++ ++++|+.
T Consensus       288 ETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k-vvqeYd~hLg~i~~i~F~~~g~rFi-ssSDdks  365 (503)
T KOG0282|consen  288 ETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK-VVQEYDRHLGAILDITFVDEGRRFI-SSSDDKS  365 (503)
T ss_pred             ccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH-HHHHHHhhhhheeeeEEccCCceEe-eeccCcc
Confidence            999999999988999999999987 899999999999999999876 4566677889999999999887655 5578899


Q ss_pred             EEEEeCCCCceEEee--------------------------------c--------------CC---CCEEEEEECCCCc
Q 024372          170 VRLWDARSGKIVQTL--------------------------------E--------------TK---SPVTSAEVSRDGR  200 (268)
Q Consensus       170 i~iwd~~~~~~~~~~--------------------------------~--------------~~---~~v~~~~~s~~g~  200 (268)
                      ++||+.+..-.++..                                +              ++   +-...+.|||||.
T Consensus       366 ~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~  445 (503)
T KOG0282|consen  366 VRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGR  445 (503)
T ss_pred             EEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCC
Confidence            999998855332111                                0              00   1235788999999


Q ss_pred             EEEEe-CCCeEEEEeCCCceeeeEEeCC-CCceeeEEcCCCCCEEEeccCCCeEEEEE
Q 024372          201 YITTA-DGSSVKFWDANHFGLVKGYNMP-CNTESASLEPKLGNIFIAGGEDMWVHVFD  256 (268)
Q Consensus       201 ~l~~~-~~~~v~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~gs~d~~i~~wd  256 (268)
                      +|.+| ++|.+.+||.++.+++..+..+ ..++...++|...+.+|++|.||.|++||
T Consensus       446 ~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  446 TLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             eEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            99887 4799999999998888888776 45677888888889999999999999996

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=5.6e-37  Score=265.80  Aligned_cols=212  Identities=27%  Similarity=0.483  Sum_probs=188.4

Q ss_pred             CCcceeeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEee
Q 024372            1 MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS   80 (268)
Q Consensus         1 ~~~~~~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s   80 (268)
                      +|+..-..-..+.||++||.++.|+|   +.++|+++|.|+++|+|...+..++-.++||..||+.+.|+|.|.|+||+|
T Consensus       436 ~D~~~~~~~~~L~GH~GPVyg~sFsP---d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas  512 (707)
T KOG0263|consen  436 LDDDSSGTSRTLYGHSGPVYGCSFSP---DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATAS  512 (707)
T ss_pred             ccccCCceeEEeecCCCceeeeeecc---cccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecC
Confidence            35555555566789999999999995   889999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEeCCCCCeeeee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCc
Q 024372           81 ADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQT  159 (268)
Q Consensus        81 ~D~~v~iw~~~~~~~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  159 (268)
                      .|++.++|......+.+.+ .|..-|.|+.|||+..++++||.|+++|+||..++. ..+.+.+|.++|.+++|+|.+ .
T Consensus       513 ~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~-~VRiF~GH~~~V~al~~Sp~G-r  590 (707)
T KOG0263|consen  513 HDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN-SVRIFTGHKGPVTALAFSPCG-R  590 (707)
T ss_pred             CCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCc-EEEEecCCCCceEEEEEcCCC-c
Confidence            9999999999888877766 488899999999999999999999999999987664 467888899999999999965 5


Q ss_pred             EEEEeeCCCeEEEEeCCCCceEEeecC-CCCEEEEEECCCCcEEEE-eCCCeEEEEeCCC
Q 024372          160 ILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITT-ADGSSVKFWDANH  217 (268)
Q Consensus       160 ~~~~~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~  217 (268)
                      .+++|++|+.|+|||+.+++.+.++.. .+.+.++.|+++|..|++ +.|..|++||+..
T Consensus       591 ~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  591 YLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK  650 (707)
T ss_pred             eEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence            677888899999999999999887764 456999999999999876 4689999999864

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.5e-34  Score=220.88  Aligned_cols=246  Identities=19%  Similarity=0.340  Sum_probs=200.2

Q ss_pred             cCC-CeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC--eEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCC
Q 024372           15 HSR-PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL   91 (268)
Q Consensus        15 h~~-~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~--~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~   91 (268)
                      |.+ -|++|+..   ||+.+||+|+. ..||+||++++.  .+.+|.+|+..|.++.|..+|+.++|||.||++||||+.
T Consensus        38 h~dsqVNrLeiT---pdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR  113 (311)
T KOG0315|consen   38 HPDSQVNRLEIT---PDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLR  113 (311)
T ss_pred             cCccceeeEEEc---CCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEecc
Confidence            443 67888775   58888886654 678999999875  689999999999999999999999999999999999999


Q ss_pred             CCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEE
Q 024372           92 TGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR  171 (268)
Q Consensus        92 ~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~  171 (268)
                      ...+.+.+.+..+|+++..+|+..-|++|..+|.|++||+.......+........+.++...|++.. ++++...|...
T Consensus       114 ~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsm-l~a~nnkG~cy  192 (311)
T KOG0315|consen  114 SLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSM-LAAANNKGNCY  192 (311)
T ss_pred             CcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcE-EEEecCCccEE
Confidence            98899999999999999999999999999999999999997654333444444567888888887765 55556669999


Q ss_pred             EEeCCCCc------eEEeecCCC-CEEEEEECCCCcEEEE-eCCCeEEEEeCCCc-eeeeEEeCCCC-ceeeEEcCCCCC
Q 024372          172 LWDARSGK------IVQTLETKS-PVTSAEVSRDGRYITT-ADGSSVKFWDANHF-GLVKGYNMPCN-TESASLEPKLGN  241 (268)
Q Consensus       172 iwd~~~~~------~~~~~~~~~-~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~-~~~~~~~~~~~-~~~~~~~~~~~~  241 (268)
                      +|++-...      ++.+++.+. -+..+-+|||+++|++ ++|.+++||+.+.+ +.-.....+.. ...++|+. +|+
T Consensus       193 vW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~  271 (311)
T KOG0315|consen  193 VWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGE  271 (311)
T ss_pred             EEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-Ccc
Confidence            99986543      344555444 4899999999999975 67999999999987 33334444433 45666666 799


Q ss_pred             EEEeccCCCeEEEEECCCCcEEeec
Q 024372          242 IFIAGGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       242 ~~~~gs~d~~i~~wd~~~g~~~~~~  266 (268)
                      +|++||.|..+++|++.+|+++..+
T Consensus       272 YlvTassd~~~rlW~~~~~k~v~qy  296 (311)
T KOG0315|consen  272 YLVTASSDHTARLWDLSAGKEVRQY  296 (311)
T ss_pred             EEEecCCCCceeecccccCceeeec
Confidence            9999999999999999999998875

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=7.3e-35  Score=255.24  Aligned_cols=246  Identities=28%  Similarity=0.411  Sum_probs=206.7

Q ss_pred             cCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC--eEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeC-C
Q 024372           15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA-L   91 (268)
Q Consensus        15 h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~--~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~-~   91 (268)
                      |...|.++.|+|   +|++|++++.|+.+++|+...++  +.+++.+|...|..++|+|++.++++++.|+++|+||+ .
T Consensus       158 ~~~sv~~~~fs~---~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~  234 (456)
T KOG0266|consen  158 ECPSVTCVDFSP---DGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKD  234 (456)
T ss_pred             ccCceEEEEEcC---CCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccC
Confidence            478899999985   89999999999999999998888  78888999999999999999999999999999999999 4


Q ss_pred             CCCeeeee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeE
Q 024372           92 TGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (268)
Q Consensus        92 ~~~~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i  170 (268)
                      .+...+++ .|...|++++|+|+++++++|+.|++|++||+++++ ....+..|.+.|++++|.+++.. +++++.|+.|
T Consensus       235 ~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~-~~~~l~~hs~~is~~~f~~d~~~-l~s~s~d~~i  312 (456)
T KOG0266|consen  235 DGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE-CVRKLKGHSDGISGLAFSPDGNL-LVSASYDGTI  312 (456)
T ss_pred             CCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe-EEEeeeccCCceEEEEECCCCCE-EEEcCCCccE
Confidence            44666766 599999999999999999999999999999998754 34566678889999998877654 5555778999


Q ss_pred             EEEeCCCCc--eEEeecCC--C-CEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeCCCCceee---EEcCCCCC
Q 024372          171 RLWDARSGK--IVQTLETK--S-PVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTESA---SLEPKLGN  241 (268)
Q Consensus       171 ~iwd~~~~~--~~~~~~~~--~-~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~~~~~~~---~~~~~~~~  241 (268)
                      +|||+.+++  ++..+...  . ++.++.|+|++++++++ .|+.+++||++....+..+..+......   ......+.
T Consensus       313 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (456)
T KOG0266|consen  313 RVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGK  392 (456)
T ss_pred             EEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCC
Confidence            999999999  56666432  2 58999999999998875 5779999999998888888765443111   11233689


Q ss_pred             EEEeccCCCeEEEEECCCCcEEee
Q 024372          242 IFIAGGEDMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       242 ~~~~gs~d~~i~~wd~~~g~~~~~  265 (268)
                      ++++|+.|+.|++||..+++.+..
T Consensus       393 ~i~sg~~d~~v~~~~~~s~~~~~~  416 (456)
T KOG0266|consen  393 LIYSGSEDGSVYVWDSSSGGILQR  416 (456)
T ss_pred             eEEEEeCCceEEEEeCCccchhhh
Confidence            999999999999999998776554

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=9.6e-35  Score=239.05  Aligned_cols=245  Identities=23%  Similarity=0.417  Sum_probs=207.5

Q ss_pred             cCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCC
Q 024372           15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD   94 (268)
Q Consensus        15 h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~   94 (268)
                      -+..|++|+|+   .+|..||+|+.||.+++|+. .|.++.+|..|+++|.++.|..+|.||++++.|+++.+||..++.
T Consensus       234 ~nkdVT~L~Wn---~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~  309 (524)
T KOG0273|consen  234 SNKDVTSLDWN---NDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGT  309 (524)
T ss_pred             ccCCcceEEec---CCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCce
Confidence            34689999998   49999999999999999995 578899999999999999999999999999999999999999999


Q ss_pred             eeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEE
Q 024372           95 EKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLW  173 (268)
Q Consensus        95 ~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iw  173 (268)
                      ....++ |..+-..|.|-.+. .+++++.|+.|+++-+.... +...+.+|.++|.++.|+|.+ .+|++|++|++++||
T Consensus       310 ~~q~f~~~s~~~lDVdW~~~~-~F~ts~td~~i~V~kv~~~~-P~~t~~GH~g~V~alk~n~tg-~LLaS~SdD~TlkiW  386 (524)
T KOG0273|consen  310 VKQQFEFHSAPALDVDWQSND-EFATSSTDGCIHVCKVGEDR-PVKTFIGHHGEVNALKWNPTG-SLLASCSDDGTLKIW  386 (524)
T ss_pred             EEEeeeeccCCccceEEecCc-eEeecCCCceEEEEEecCCC-cceeeecccCceEEEEECCCC-ceEEEecCCCeeEee
Confidence            888886 44454667776544 57899999999999987544 445555688999999999866 578899999999999


Q ss_pred             eCCCCceEEeecCC-CCEEEEEECCCCc----------EEEEeCCCeEEEEeCCCceeeeEEeC-CCCceeeEEcCCCCC
Q 024372          174 DARSGKIVQTLETK-SPVTSAEVSRDGR----------YITTADGSSVKFWDANHFGLVKGYNM-PCNTESASLEPKLGN  241 (268)
Q Consensus       174 d~~~~~~~~~~~~~-~~v~~~~~s~~g~----------~l~~~~~~~v~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~  241 (268)
                      ......+++.+..| ..+..+.|+|.|.          ++.++.|.+|++||+..+.++.++.. ..++.++.++| +|+
T Consensus       387 s~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~-~g~  465 (524)
T KOG0273|consen  387 SMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSP-NGR  465 (524)
T ss_pred             ecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecC-CCc
Confidence            98888888877754 4689999998662          34456789999999999999999854 55667778777 699


Q ss_pred             EEEeccCCCeEEEEECCCCcEEeecc
Q 024372          242 IFIAGGEDMWVHVFDFHTGEQIAITS  267 (268)
Q Consensus       242 ~~~~gs~d~~i~~wd~~~g~~~~~~~  267 (268)
                      ++++|+.|+.|.+|+.++|+.++.+.
T Consensus       466 ylAsGs~dg~V~iws~~~~~l~~s~~  491 (524)
T KOG0273|consen  466 YLASGSLDGCVHIWSTKTGKLVKSYQ  491 (524)
T ss_pred             EEEecCCCCeeEeccccchheeEeec
Confidence            99999999999999999999988753

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.4e-34  Score=226.31  Aligned_cols=249  Identities=23%  Similarity=0.377  Sum_probs=202.0

Q ss_pred             eecEEe-eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC-CCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCc
Q 024372            7 AVPLVC-HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-GDWIGTFEGHKGAVWSCCLDANALFSASGSADFT   84 (268)
Q Consensus         7 ~~~~~~-~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~-~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~   84 (268)
                      .+|.+. .+|++.|+.+.|+|   +|.+||+|+.|..|.+|++.. -+....+++|++.|..+.|.+|+..++|+|.|++
T Consensus        37 ~ap~m~l~gh~geI~~~~F~P---~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~  113 (338)
T KOG0265|consen   37 QAPIMLLPGHKGEIYTIKFHP---DGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKT  113 (338)
T ss_pred             cchhhhcCCCcceEEEEEECC---CCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCce
Confidence            344444 69999999999996   899999999999999999654 3566778899999999999999999999999999


Q ss_pred             EEEEeCCCCCeeeeec-cCCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEE
Q 024372           85 AKLWDALTGDEKHSFE-HKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILS  162 (268)
Q Consensus        85 v~iw~~~~~~~~~~~~-~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  162 (268)
                      ++.||++++++.+.+. |...|+.+.-+. ...++.+|+.|+++|+||+++.+.. +.+ ..+-.++++.|.......++
T Consensus       114 v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~-~t~-~~kyqltAv~f~d~s~qv~s  191 (338)
T KOG0265|consen  114 VRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAI-KTF-ENKYQLTAVGFKDTSDQVIS  191 (338)
T ss_pred             EEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchh-hcc-ccceeEEEEEecccccceee
Confidence            9999999999988774 888898887333 4468889999999999999864432 222 23457889999877766665


Q ss_pred             EeeCCCeEEEEeCCCCceEEeecCC-CCEEEEEECCCCcEEEE-eCCCeEEEEeCCCc----eeeeEEeCCC-----Cce
Q 024372          163 SCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITT-ADGSSVKFWDANHF----GLVKGYNMPC-----NTE  231 (268)
Q Consensus       163 ~~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~----~~~~~~~~~~-----~~~  231 (268)
                      ++ =|+.|++||+|.++..+++.++ .+|..+..+|+|.++.+ +=|.++++||++.+    ++++.+..+.     +..
T Consensus       192 gg-Idn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL  270 (338)
T KOG0265|consen  192 GG-IDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLL  270 (338)
T ss_pred             cc-ccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcc
Confidence            55 5699999999999999999866 46999999999999877 45889999999875    4566665432     344


Q ss_pred             eeEEcCCCCCEEEeccCCCeEEEEECCCCcE
Q 024372          232 SASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ  262 (268)
Q Consensus       232 ~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~  262 (268)
                      .++++| .++.+.+|+.|+.+|+||...-..
T Consensus       271 ~cswsp-~~~~i~ags~dr~vyvwd~~~r~~  300 (338)
T KOG0265|consen  271 KCSWSP-NGTKITAGSADRFVYVWDTTSRRI  300 (338)
T ss_pred             eeeccC-CCCccccccccceEEEeecccccE
Confidence            566676 588888999999999999865343

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=6.5e-34  Score=221.86  Aligned_cols=234  Identities=23%  Similarity=0.354  Sum_probs=203.3

Q ss_pred             CCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCC------CeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEe
Q 024372           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG------DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (268)
Q Consensus        16 ~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~------~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~   89 (268)
                      +.=|-.++|+|   .|+++|+|+.|..+.||++.+.      +..+.+.+|++-+.+|.|-+|+ +|+|+|.|.+.-+||
T Consensus        97 s~WVMtCA~sP---Sg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWD  172 (343)
T KOG0286|consen   97 SSWVMTCAYSP---SGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWD  172 (343)
T ss_pred             ceeEEEEEECC---CCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEE
Confidence            44577899985   8999999999999999998854      3457789999999999998865 567999999999999


Q ss_pred             CCCCCeeeeec-cCCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCC
Q 024372           90 ALTGDEKHSFE-HKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS  167 (268)
Q Consensus        90 ~~~~~~~~~~~-~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d  167 (268)
                      +++++....|. |..-|.+++++| +++++++|+-|+..++||++.+. -.+.+..|...|+++.|+|++. -+++|++|
T Consensus       173 ie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~-c~qtF~ghesDINsv~ffP~G~-afatGSDD  250 (343)
T KOG0286|consen  173 IETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ-CVQTFEGHESDINSVRFFPSGD-AFATGSDD  250 (343)
T ss_pred             cccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcc-eeEeecccccccceEEEccCCC-eeeecCCC
Confidence            99999988885 888999999999 99999999999999999999874 3567778999999999999876 46788999


Q ss_pred             CeEEEEeCCCCceEEeecCC---CCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeCCCCceee-EEcCCCCCE
Q 024372          168 GGVRLWDARSGKIVQTLETK---SPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTESA-SLEPKLGNI  242 (268)
Q Consensus       168 ~~i~iwd~~~~~~~~~~~~~---~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  242 (268)
                      ++.|+||+|..+.+..+++.   .++++++||..|++|.++ .|.++.+||.-+.+.+-.+..+.+..++ ...| +|-.
T Consensus       251 ~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~-DG~a  329 (343)
T KOG0286|consen  251 ATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSP-DGMA  329 (343)
T ss_pred             ceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECC-CCcE
Confidence            99999999999999888753   579999999999998875 6899999999888888777777765544 4555 7999


Q ss_pred             EEeccCCCeEEEEE
Q 024372          243 FIAGGEDMWVHVFD  256 (268)
Q Consensus       243 ~~~gs~d~~i~~wd  256 (268)
                      +++||.|.++++|.
T Consensus       330 v~TgSWDs~lriW~  343 (343)
T KOG0286|consen  330 VATGSWDSTLRIWA  343 (343)
T ss_pred             EEecchhHheeecC
Confidence            99999999999994

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=5.7e-35  Score=233.40  Aligned_cols=246  Identities=19%  Similarity=0.322  Sum_probs=210.7

Q ss_pred             EeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeC
Q 024372           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA   90 (268)
Q Consensus        11 ~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~   90 (268)
                      ++.||.+=|.++++.|   ..+++++|+.|++++|||+.+|++..++.||...|+.+++++...|+.+++.|++|+.||+
T Consensus       146 Vi~gHlgWVr~vavdP---~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDL  222 (460)
T KOG0285|consen  146 VISGHLGWVRSVAVDP---GNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDL  222 (460)
T ss_pred             hhhhccceEEEEeeCC---CceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEec
Confidence            3469999999999986   6789999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeeeee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCe
Q 024372           91 LTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG  169 (268)
Q Consensus        91 ~~~~~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~  169 (268)
                      +.++.++.+ .|-+.|.+++.+|....|++|+.|.++|+||+++.. ....+.+|..+|..+.+.|-++.++ +|+-|++
T Consensus       223 e~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~-~V~~l~GH~~~V~~V~~~~~dpqvi-t~S~D~t  300 (460)
T KOG0285|consen  223 EYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA-SVHVLSGHTNPVASVMCQPTDPQVI-TGSHDST  300 (460)
T ss_pred             hhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc-eEEEecCCCCcceeEEeecCCCceE-EecCCce
Confidence            999987765 588899999999999999999999999999998743 4556678899999999887777554 6677899


Q ss_pred             EEEEeCCCCceEEeecCC-CCEEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccC
Q 024372          170 VRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE  248 (268)
Q Consensus       170 i~iwd~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~  248 (268)
                      |++||++.|+.+.++.++ ..+.+++.+|....++++.-..|+-|++-.+..+..+..+..+. ..+.-+++.++++|++
T Consensus       301 vrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~ii-ntl~~nsD~v~~~G~d  379 (460)
T KOG0285|consen  301 VRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAII-NTLSVNSDGVLVSGGD  379 (460)
T ss_pred             EEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhcccccccee-eeeeeccCceEEEcCC
Confidence            999999999998887654 56999999999988888877799999998776666555443322 2223335788999999


Q ss_pred             CCeEEEEECCCCcE
Q 024372          249 DMWVHVFDFHTGEQ  262 (268)
Q Consensus       249 d~~i~~wd~~~g~~  262 (268)
                      ++.|..||.++|-.
T Consensus       380 ng~~~fwdwksg~n  393 (460)
T KOG0285|consen  380 NGSIMFWDWKSGHN  393 (460)
T ss_pred             ceEEEEEecCcCcc
Confidence            99999999987654

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.9e-35  Score=237.48  Aligned_cols=252  Identities=22%  Similarity=0.303  Sum_probs=212.5

Q ss_pred             EeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC---CCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEE
Q 024372           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET---GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKL   87 (268)
Q Consensus        11 ~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~---~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~i   87 (268)
                      ++..|+++|+-+.|++   +|+|||+||.|.+..||.+..   -++..++.+|..+|..+.|+||.+++++|+.|..+++
T Consensus       219 il~~htdEVWfl~FS~---nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l  295 (519)
T KOG0293|consen  219 ILQDHTDEVWFLQFSH---NGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL  295 (519)
T ss_pred             hHhhCCCcEEEEEEcC---CCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence            4568999999999985   999999999999999997654   3568899999999999999999999999999999999


Q ss_pred             EeCCCCCeeeeeccC--CeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEee
Q 024372           88 WDALTGDEKHSFEHK--HIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT  165 (268)
Q Consensus        88 w~~~~~~~~~~~~~~--~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  165 (268)
                      ||+.++...+.+++.  ..+.+++|.||+..+++|+.|+.|.+||++.... ..=.+-....|.+++..++|..+++.+.
T Consensus       296 wDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~-~~W~gvr~~~v~dlait~Dgk~vl~v~~  374 (519)
T KOG0293|consen  296 WDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNIL-GNWEGVRDPKVHDLAITYDGKYVLLVTV  374 (519)
T ss_pred             ccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchh-hcccccccceeEEEEEcCCCcEEEEEec
Confidence            999999999988866  6789999999999999999999999999864321 1111112245888999999988888775


Q ss_pred             CCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeCCCC---ceeeEEcCCCCC
Q 024372          166 DSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCN---TESASLEPKLGN  241 (268)
Q Consensus       166 ~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~~~---~~~~~~~~~~~~  241 (268)
                       |..|++++.++..+......+.++.+..+|.||+++... .+.++.+||++....++.|..+..   ....+|-..+..
T Consensus       375 -d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~  453 (519)
T KOG0293|consen  375 -DKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDK  453 (519)
T ss_pred             -ccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcc
Confidence             599999999988877777777899999999999998765 789999999998888888876432   345566554567


Q ss_pred             EEEeccCCCeEEEEECCCCcEEeecc
Q 024372          242 IFIAGGEDMWVHVFDFHTGEQIAITS  267 (268)
Q Consensus       242 ~~~~gs~d~~i~~wd~~~g~~~~~~~  267 (268)
                      ++++||+|++||+|+-.+|+++++.+
T Consensus       454 fiaSGSED~kvyIWhr~sgkll~~Ls  479 (519)
T KOG0293|consen  454 FIASGSEDSKVYIWHRISGKLLAVLS  479 (519)
T ss_pred             eEEecCCCceEEEEEccCCceeEeec
Confidence            88999999999999999999999864

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.8e-35  Score=248.72  Aligned_cols=248  Identities=22%  Similarity=0.287  Sum_probs=221.3

Q ss_pred             eeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCC
Q 024372           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL   91 (268)
Q Consensus        12 ~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~   91 (268)
                      +..|++.|.++.|+|..|   +++++-.+|.+.||+-++...++.|.-..-||+++.|-.....+++||.|..||+++.+
T Consensus         9 ~~~rSdRVKsVd~HPteP---w~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnyn   85 (794)
T KOG0276|consen    9 FQSRSDRVKSVDFHPTEP---WILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYN   85 (794)
T ss_pred             hhccCCceeeeecCCCCc---eEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecc
Confidence            445999999999999766   89999999999999999999999998888999999999999999999999999999999


Q ss_pred             CCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeE
Q 024372           92 TGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (268)
Q Consensus        92 ~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i  170 (268)
                      +...+..|+ |.+.|++++.||....++|++.|.+|++||.+..-...+.+.+|...|.+++|+|.+.+.+++++-|++|
T Consensus        86 t~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTV  165 (794)
T KOG0276|consen   86 TGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTV  165 (794)
T ss_pred             cceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccE
Confidence            999999986 9999999999999999999999999999999876656678888999999999999999999999999999


Q ss_pred             EEEeCCCCceEEeecCC-CCEEEEEECCCC--cEEEE-eCCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEec
Q 024372          171 RLWDARSGKIVQTLETK-SPVTSAEVSRDG--RYITT-ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAG  246 (268)
Q Consensus       171 ~iwd~~~~~~~~~~~~~-~~v~~~~~s~~g--~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  246 (268)
                      ++|.+.+..+..+++.| ..|+++.+-|.|  -++++ ++|.+|++||.++..|+++...+.+..+..++.+.=.++++|
T Consensus       166 KVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisg  245 (794)
T KOG0276|consen  166 KVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISG  245 (794)
T ss_pred             EEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEe
Confidence            99999999998999865 459999998766  46655 578999999999999999998776655555554468899999


Q ss_pred             cCCCeEEEEECCCCcE
Q 024372          247 GEDMWVHVFDFHTGEQ  262 (268)
Q Consensus       247 s~d~~i~~wd~~~g~~  262 (268)
                      |+||++++|+..|.++
T Consensus       246 sEDGTvriWhs~Ty~l  261 (794)
T KOG0276|consen  246 SEDGTVRIWNSKTYKL  261 (794)
T ss_pred             cCCccEEEecCcceeh
Confidence            9999999999876554

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=6.8e-34  Score=245.52  Aligned_cols=248  Identities=22%  Similarity=0.325  Sum_probs=211.3

Q ss_pred             eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCC
Q 024372           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT   92 (268)
Q Consensus        13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~   92 (268)
                      .||...+++++++|   ||+++|+|+.|++|+|||...|-++.+|..|++.|..++|+..+..++|.|-||+||.||+..
T Consensus       347 QgH~~~i~~l~YSp---Dgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR  423 (893)
T KOG0291|consen  347 QGHSDRITSLAYSP---DGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR  423 (893)
T ss_pred             cccccceeeEEECC---CCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecc
Confidence            48999999999985   999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeeeeeccCCeE--EEEEECCCCCEEEEeeCCCe-EEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCe
Q 024372           93 GDEKHSFEHKHIV--RACAFSEDTHLLLTGGFEKI-LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG  169 (268)
Q Consensus        93 ~~~~~~~~~~~~v--~~v~~~~~~~~l~s~~~d~~-i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~  169 (268)
                      ..+.+++..+.++  .|++..|.|.++++|+.|.. |++|++.+++ ......+|.++|.+++|+|.+. .+++++.|++
T Consensus       424 YrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGq-llDiLsGHEgPVs~l~f~~~~~-~LaS~SWDkT  501 (893)
T KOG0291|consen  424 YRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQ-LLDILSGHEGPVSGLSFSPDGS-LLASGSWDKT  501 (893)
T ss_pred             cceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCe-eeehhcCCCCcceeeEEccccC-eEEeccccce
Confidence            9999999877765  47888888999999988864 9999998875 3456678999999999998776 6778888999


Q ss_pred             EEEEeCCC-CceEEeecCCCCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeee----------------EEeCC----
Q 024372          170 VRLWDARS-GKIVQTLETKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVK----------------GYNMP----  227 (268)
Q Consensus       170 i~iwd~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~----------------~~~~~----  227 (268)
                      ||+||+-. ...+.+++....+..++|.|+|+-++.+ -|+.|.+||.+....+-                .+...    
T Consensus       502 VRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~  581 (893)
T KOG0291|consen  502 VRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAK  581 (893)
T ss_pred             EEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhccc
Confidence            99999854 3467778888889999999999998765 58999999986433221                11111    


Q ss_pred             -CCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEeec
Q 024372          228 -CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       228 -~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~~  266 (268)
                       .....++.++ +|..+++||....|.+||+.++-.+..+
T Consensus       582 ~K~Ftti~ySa-DG~~IlAgG~sn~iCiY~v~~~vllkkf  620 (893)
T KOG0291|consen  582 GKTFTTICYSA-DGKCILAGGESNSICIYDVPEGVLLKKF  620 (893)
T ss_pred             CCceEEEEEcC-CCCEEEecCCcccEEEEECchhheeeeE
Confidence             2345677787 6999999999999999999998887764

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.2e-34  Score=251.40  Aligned_cols=237  Identities=21%  Similarity=0.329  Sum_probs=195.5

Q ss_pred             ecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC-------------------------------------------
Q 024372           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-------------------------------------------   50 (268)
Q Consensus        14 ~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~-------------------------------------------   50 (268)
                      +|.+.|+++.|++   ||+|||+|+.|+.|+||.+..                                           
T Consensus       265 ah~gaIw~mKFS~---DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~  341 (712)
T KOG0283|consen  265 AHKGAIWAMKFSH---DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK  341 (712)
T ss_pred             ccCCcEEEEEeCC---CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence            7999999999984   999999999999999996544                                           


Q ss_pred             -----------------CCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEEECC-
Q 024372           51 -----------------GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSE-  112 (268)
Q Consensus        51 -----------------~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~-  112 (268)
                                       -+.++.|.||.+.|+.++|+.+ .+|+|+|.|+|||||++....++..|.|.+.|+||+|+| 
T Consensus       342 ~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPv  420 (712)
T KOG0283|consen  342 GSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPV  420 (712)
T ss_pred             ccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEecCCeeEEEEeccc
Confidence                             0123566899999999999965 578899999999999999999999999999999999999 


Q ss_pred             CCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecC------
Q 024372          113 DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET------  186 (268)
Q Consensus       113 ~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~------  186 (268)
                      |.+++++|+-|+.+|||++...  ...........|++++|.|+|+..++ |+.+|.+++|+++..+....+..      
T Consensus       421 DDryFiSGSLD~KvRiWsI~d~--~Vv~W~Dl~~lITAvcy~PdGk~avI-Gt~~G~C~fY~t~~lk~~~~~~I~~~~~K  497 (712)
T KOG0283|consen  421 DDRYFISGSLDGKVRLWSISDK--KVVDWNDLRDLITAVCYSPDGKGAVI-GTFNGYCRFYDTEGLKLVSDFHIRLHNKK  497 (712)
T ss_pred             CCCcEeecccccceEEeecCcC--eeEeehhhhhhheeEEeccCCceEEE-EEeccEEEEEEccCCeEEEeeeEeeccCc
Confidence            8899999999999999998643  23344445578999999999776555 55669999999998776544321      


Q ss_pred             ---CCCEEEEEECCCC--cEEEEeCCCeEEEEeCCCceeeeEEeCCC---CceeeEEcCCCCCEEEeccCCCeEEEEECC
Q 024372          187 ---KSPVTSAEVSRDG--RYITTADGSSVKFWDANHFGLVKGYNMPC---NTESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (268)
Q Consensus       187 ---~~~v~~~~~s~~g--~~l~~~~~~~v~~wd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~  258 (268)
                         +..|..+.+.|..  ++|+++.|..|||+|++.-.++..|....   ......+.. +|+++|+|++|..||+|+..
T Consensus       498 k~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~-Dgk~IVs~seDs~VYiW~~~  576 (712)
T KOG0283|consen  498 KKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSS-DGKHIVSASEDSWVYIWKND  576 (712)
T ss_pred             cccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEcc-CCCEEEEeecCceEEEEeCC
Confidence               2369999998765  48889999999999998777766665432   234566676 79999999999999999974

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=2.4e-34  Score=221.85  Aligned_cols=246  Identities=25%  Similarity=0.446  Sum_probs=199.7

Q ss_pred             ecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEE
Q 024372            8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKL   87 (268)
Q Consensus         8 ~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~i   87 (268)
                      .|+.+.||+.|++.+.|+   .+|.+|++++.|.+..+|-...|+.+.++.||++.|++|....+.++++||+.|.++++
T Consensus         2 rpi~l~GHERplTqiKyN---~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kL   78 (327)
T KOG0643|consen    2 RPILLQGHERPLTQIKYN---REGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKL   78 (327)
T ss_pred             CccccccCccccceEEec---CCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEE
Confidence            478899999999999998   59999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCCeeeeec------------------------------------------------------cCCeEEEEEECCC
Q 024372           88 WDALTGDEKHSFE------------------------------------------------------HKHIVRACAFSED  113 (268)
Q Consensus        88 w~~~~~~~~~~~~------------------------------------------------------~~~~v~~v~~~~~  113 (268)
                      ||+.+++++..+.                                                      +.+.++.+-|+|-
T Consensus        79 WDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l  158 (327)
T KOG0643|consen   79 WDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPL  158 (327)
T ss_pred             EEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeeccc
Confidence            9999887544331                                                      1123556678888


Q ss_pred             CCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCCCEEEE
Q 024372          114 THLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSA  193 (268)
Q Consensus       114 ~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~  193 (268)
                      ++++++|..||.|..||++++.........|...|+.++++++.. ++++++.|.+-++||.++.++++++....|+++.
T Consensus       159 ~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T-~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~a  237 (327)
T KOG0643|consen  159 GETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRT-YFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTA  237 (327)
T ss_pred             CCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcc-eEEecccCccceeeeccceeeEEEeeecccccce
Confidence            899999999999999999877655555556777899999988765 5667778899999999999999999999999999


Q ss_pred             EECCCCcEEEEeCCCe---------------EEEEeCCCceeeeEEeCCCC-ceeeEEcCCCCCEEEeccCCCeEEEEEC
Q 024372          194 EVSRDGRYITTADGSS---------------VKFWDANHFGLVKGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDF  257 (268)
Q Consensus       194 ~~s~~g~~l~~~~~~~---------------v~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gs~d~~i~~wd~  257 (268)
                      +++|-..+++.+.+..               .|+|++-..+.+-.+..+.+ +.+++++| +|..+++|++||.|++..+
T Consensus       238 aisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhP-dGksYsSGGEDG~VR~h~F  316 (327)
T KOG0643|consen  238 AISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHP-DGKSYSSGGEDGYVRLHHF  316 (327)
T ss_pred             ecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECC-CCcccccCCCCceEEEEEe
Confidence            9999877766544322               23333322222333333433 45677777 7999999999999999877


Q ss_pred             C
Q 024372          258 H  258 (268)
Q Consensus       258 ~  258 (268)
                      .
T Consensus       317 d  317 (327)
T KOG0643|consen  317 D  317 (327)
T ss_pred             c
Confidence            5

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=3.7e-35  Score=237.75  Aligned_cols=243  Identities=23%  Similarity=0.366  Sum_probs=206.0

Q ss_pred             CCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCee
Q 024372           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEK   96 (268)
Q Consensus        17 ~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~   96 (268)
                      .+|..+.|.   |+|+.|++|+..|...+|+...-.+...+..|..+|+++.|++++.+++||..+|.||+|+.+.+..+
T Consensus        97 c~V~~v~Wt---PeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk  173 (464)
T KOG0284|consen   97 CPVNVVRWT---PEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVK  173 (464)
T ss_pred             cceeeEEEc---CCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhH
Confidence            388899997   59999999999999999998554333345789999999999999999999999999999998777666


Q ss_pred             eeeccC-CeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeC
Q 024372           97 HSFEHK-HIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA  175 (268)
Q Consensus        97 ~~~~~~-~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~  175 (268)
                      ....|. +.|++++|+|+...+++++.|+.|++||...+.. .+.+..|.-.|.+++|.|.- .+++++++|+.|++||.
T Consensus       174 ~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ke-e~vL~GHgwdVksvdWHP~k-gLiasgskDnlVKlWDp  251 (464)
T KOG0284|consen  174 IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE-ERVLRGHGWDVKSVDWHPTK-GLIASGSKDNLVKLWDP  251 (464)
T ss_pred             HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCch-hheeccCCCCcceeccCCcc-ceeEEccCCceeEeecC
Confidence            555554 8999999999999999999999999999876543 34446777889999998754 57778889999999999


Q ss_pred             CCCceEEeec-CCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCC-CceeeEEcCCCCCEEEeccCCCeE
Q 024372          176 RSGKIVQTLE-TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPC-NTESASLEPKLGNIFIAGGEDMWV  252 (268)
Q Consensus       176 ~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gs~d~~i  252 (268)
                      ++++|+.++. ++..|..+.|+|++++|++ +.|..++++|++..+.+..+..+. ...++.++|-...+|++|+.|+.|
T Consensus       252 rSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsv  331 (464)
T KOG0284|consen  252 RSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSV  331 (464)
T ss_pred             CCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCce
Confidence            9999999886 4566999999999999887 568999999999888888887544 567888888888999999999999


Q ss_pred             EEEECCCCcEEe
Q 024372          253 HVFDFHTGEQIA  264 (268)
Q Consensus       253 ~~wd~~~g~~~~  264 (268)
                      ..|.+...+++.
T Consensus       332 vh~~v~~~~p~~  343 (464)
T KOG0284|consen  332 VHWVVGLEEPLG  343 (464)
T ss_pred             EEEecccccccc
Confidence            999987555543

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=3.9e-33  Score=213.19  Aligned_cols=225  Identities=20%  Similarity=0.250  Sum_probs=186.0

Q ss_pred             CcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCe--eeeec-cCCeEEE
Q 024372           31 GFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE--KHSFE-HKHIVRA  107 (268)
Q Consensus        31 g~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~--~~~~~-~~~~v~~  107 (268)
                      --+|++++.|.+||+|...+|.+.+++....+.|..+++.|++..||.++. ..||+||++++.+  +.+++ |...|..
T Consensus        10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVta   88 (311)
T KOG0315|consen   10 PVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTA   88 (311)
T ss_pred             ceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEE
Confidence            358999999999999999999999999977889999999999999887764 5899999987664  66665 7788999


Q ss_pred             EEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeec--
Q 024372          108 CAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE--  185 (268)
Q Consensus       108 v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~--  185 (268)
                      +.|..+|+++++|+.||++|+||++..  ..+....+..+|+++...|.+.. +++|..+|.|++||++...+...+-  
T Consensus        89 VgF~~dgrWMyTgseDgt~kIWdlR~~--~~qR~~~~~spVn~vvlhpnQte-Lis~dqsg~irvWDl~~~~c~~~liPe  165 (311)
T KOG0315|consen   89 VGFQCDGRWMYTGSEDGTVKIWDLRSL--SCQRNYQHNSPVNTVVLHPNQTE-LISGDQSGNIRVWDLGENSCTHELIPE  165 (311)
T ss_pred             EEEeecCeEEEecCCCceEEEEeccCc--ccchhccCCCCcceEEecCCcce-EEeecCCCcEEEEEccCCccccccCCC
Confidence            999999999999999999999999873  34444556789999998776655 5566778999999999988877663  


Q ss_pred             CCCCEEEEEECCCCcEEEEeC-CCeEEEEeCCC------ceeeeEEeCCCCc-eeeEEcCCCCCEEEeccCCCeEEEEEC
Q 024372          186 TKSPVTSAEVSRDGRYITTAD-GSSVKFWDANH------FGLVKGYNMPCNT-ESASLEPKLGNIFIAGGEDMWVHVFDF  257 (268)
Q Consensus       186 ~~~~v~~~~~s~~g~~l~~~~-~~~v~~wd~~~------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~gs~d~~i~~wd~  257 (268)
                      ...++.++.+.|||.++++.. .|.+.+|++-+      ..++..|+.+... ..+.++| ++++|+++|.|.++++|+.
T Consensus       166 ~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP-d~k~lat~ssdktv~iwn~  244 (311)
T KOG0315|consen  166 DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSP-DVKYLATCSSDKTVKIWNT  244 (311)
T ss_pred             CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECC-CCcEEEeecCCceEEEEec
Confidence            346799999999999998875 58999999854      2344555555544 4455555 7999999999999999998


Q ss_pred             CCC
Q 024372          258 HTG  260 (268)
Q Consensus       258 ~~g  260 (268)
                      ++-
T Consensus       245 ~~~  247 (311)
T KOG0315|consen  245 DDF  247 (311)
T ss_pred             CCc
Confidence            755

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.9e-34  Score=245.81  Aligned_cols=248  Identities=23%  Similarity=0.359  Sum_probs=205.0

Q ss_pred             ceeeecEEeeecCCCeeeEE-EecCCCCCcEEEEEeCCCCeEEeeCCCC----CeEEEeeCccCcEEEEEecCCC-cEEE
Q 024372            4 RKVAVPLVCHGHSRPVVDLF-YSPITPDGFFLVSASKDSSPMLRNGETG----DWIGTFEGHKGAVWSCCLDANA-LFSA   77 (268)
Q Consensus         4 ~~~~~~~~~~~h~~~v~~~~-f~~~~~dg~~l~s~s~d~~i~iw~~~~~----~~~~~~~~h~~~V~~~~~~~~~-~~l~   77 (268)
                      +.+++- +++||++.|.+++ |+    +|-+|+|||.|+++++|..+.+    -+++...||++.|.+++++..+ .+|+
T Consensus       354 ~~~~c~-ii~GH~e~vlSL~~~~----~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffv  428 (775)
T KOG0319|consen  354 PTSYCQ-IIPGHTEAVLSLDVWS----SGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFV  428 (775)
T ss_pred             CCCceE-EEeCchhheeeeeecc----cCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEE
Confidence            344444 5789999999998 43    6789999999999999976433    2566778999999999997655 6899


Q ss_pred             EeeCCCcEEEEeCCCCCee-----e-----eeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCccc
Q 024372           78 SGSADFTAKLWDALTGDEK-----H-----SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGS  147 (268)
Q Consensus        78 s~s~D~~v~iw~~~~~~~~-----~-----~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~  147 (268)
                      |+|.|+++++|++...+..     .     ...|...|++|+.+|+.+++||||.|++.++|+++.. .....+.+|+-.
T Consensus       429 svS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~-~l~~vLsGH~RG  507 (775)
T KOG0319|consen  429 SVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL-RLLGVLSGHTRG  507 (775)
T ss_pred             EecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCc-eEEEEeeCCccc
Confidence            9999999999998652211     1     1138889999999999999999999999999999733 233456678889


Q ss_pred             EEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecC-CCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEe
Q 024372          148 IRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYN  225 (268)
Q Consensus       148 v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~  225 (268)
                      +.++.|++.++ ++++|+.|++||||.+.+++|+++|++ .+.|..+.|-.+|+.+++ ++||.|++|++.+.+|+.++.
T Consensus       508 vw~V~Fs~~dq-~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD  586 (775)
T KOG0319|consen  508 VWCVSFSKNDQ-LLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLD  586 (775)
T ss_pred             eEEEEeccccc-eeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhh
Confidence            99999998765 677888889999999999999999995 567999999999887765 679999999999999999998


Q ss_pred             CCCC-ceeeEEcCCCCCEEEeccCCCeEEEEECCC
Q 024372          226 MPCN-TESASLEPKLGNIFIAGGEDMWVHVFDFHT  259 (268)
Q Consensus       226 ~~~~-~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~  259 (268)
                      .+.. ..++...+ ...+|++|+.|+.|.+|.-.|
T Consensus       587 ~H~DrvWaL~~~~-~~~~~~tgg~Dg~i~~wkD~T  620 (775)
T KOG0319|consen  587 AHNDRVWALSVSP-LLDMFVTGGGDGRIIFWKDVT  620 (775)
T ss_pred             hccceeEEEeecC-ccceeEecCCCeEEEEeecCc
Confidence            7654 67777777 477999999999999997444

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=7.5e-33  Score=227.92  Aligned_cols=243  Identities=23%  Similarity=0.357  Sum_probs=210.1

Q ss_pred             EEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEe
Q 024372           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (268)
Q Consensus        10 ~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~   89 (268)
                      ..|..|.+||.++.|+   .+|.||++++.|+++.+||..+|+....|.-|+.+-..|.|-.+.. +++++.|+.|+++.
T Consensus       270 ~tl~~HkgPI~slKWn---k~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~-F~ts~td~~i~V~k  345 (524)
T KOG0273|consen  270 STLGQHKGPIFSLKWN---KKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDE-FATSSTDGCIHVCK  345 (524)
T ss_pred             hhhhccCCceEEEEEc---CCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCce-EeecCCCceEEEEE
Confidence            3456899999999998   6899999999999999999999999999999999977888876554 68999999999999


Q ss_pred             CCCCCeeeee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCC--------cE
Q 024372           90 ALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ--------TI  160 (268)
Q Consensus        90 ~~~~~~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------~~  160 (268)
                      +....++.++ .|..+|.++.|+|.+.+|++++.|+++++|...... ....+..|...|..+.|+|.++        ..
T Consensus       346 v~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~-~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~  424 (524)
T KOG0273|consen  346 VGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSN-SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLM  424 (524)
T ss_pred             ecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCc-chhhhhhhccceeeEeecCCCCccCCCcCCce
Confidence            9877766665 488899999999999999999999999999975432 2334445667888888887653        46


Q ss_pred             EEEeeCCCeEEEEeCCCCceEEee-cCCCCEEEEEECCCCcEEEEeC-CCeEEEEeCCCceeeeEEeCCCCceeeEEcCC
Q 024372          161 LSSCTDSGGVRLWDARSGKIVQTL-ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTESASLEPK  238 (268)
Q Consensus       161 ~~~~~~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~~~-~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~  238 (268)
                      +++++.|++|++||+..+.++++| .|..+|.+++|+|+|+++++++ |+.|.+|+.+.++.++.+.....+..++|.. 
T Consensus       425 l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~-  503 (524)
T KOG0273|consen  425 LASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNA-  503 (524)
T ss_pred             EEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCeEEEEEEcC-
Confidence            777778899999999999999998 5778899999999999999874 8999999999999999998887778888887 


Q ss_pred             CCCEEEeccCCCeEEEEECC
Q 024372          239 LGNIFIAGGEDMWVHVFDFH  258 (268)
Q Consensus       239 ~~~~~~~gs~d~~i~~wd~~  258 (268)
                      .|+.+.++..|+.+.+-|++
T Consensus       504 ~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  504 AGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             CCCEEEEEecCCCceEEEec
Confidence            58889999999999998874

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=9.9e-33  Score=241.81  Aligned_cols=240  Identities=27%  Similarity=0.475  Sum_probs=197.4

Q ss_pred             eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeC-CCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCC
Q 024372           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNG-ETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL   91 (268)
Q Consensus        13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~-~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~   91 (268)
                      .+|...|++++|+|   ||.++++++.|++++|||+ ..+..++++++|...|++++|+|++.++++|+.|++||+||+.
T Consensus       200 ~~h~~~v~~~~fs~---d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~  276 (456)
T KOG0266|consen  200 SGHTRGVSDVAFSP---DGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVR  276 (456)
T ss_pred             cccccceeeeEECC---CCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEecc
Confidence            68999999999985   9999999999999999999 5568999999999999999999999999999999999999999


Q ss_pred             CCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCC-CeEe-cCCcc-cEEEEEEeCCCCcEEEEeeCC
Q 024372           92 TGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP-PREV-GNSSG-SIRTVAWLHSDQTILSSCTDS  167 (268)
Q Consensus        92 ~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~-~~~~-~~~~~-~v~~~~~~~~~~~~~~~~~~d  167 (268)
                      ++.+...+. |...|.+++|++++..|++++.|+.|++||+.++... .... ..... +++++.|+|++.+++ ++..|
T Consensus       277 ~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll-~~~~d  355 (456)
T KOG0266|consen  277 TGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLL-SASLD  355 (456)
T ss_pred             CCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEE-EecCC
Confidence            999988886 8889999999999999999999999999999876521 1222 22222 689999998876655 55677


Q ss_pred             CeEEEEeCCCCceEEeecCCCC----EEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeCC-CCc-eeeEEcCCCC
Q 024372          168 GGVRLWDARSGKIVQTLETKSP----VTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMP-CNT-ESASLEPKLG  240 (268)
Q Consensus       168 ~~i~iwd~~~~~~~~~~~~~~~----v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~-~~~-~~~~~~~~~~  240 (268)
                      +.+++||++.++++.++..+..    +.+...+++++++.++ .|+.|.+||..+...+..+..+ ... ....+.+ ..
T Consensus       356 ~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~-~~  434 (456)
T KOG0266|consen  356 RTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHP-TE  434 (456)
T ss_pred             CeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCC-Cc
Confidence            9999999999999887764322    3344457888888765 6899999999987777777666 333 3344444 67


Q ss_pred             CEEEecc--CCCeEEEEEC
Q 024372          241 NIFIAGG--EDMWVHVFDF  257 (268)
Q Consensus       241 ~~~~~gs--~d~~i~~wd~  257 (268)
                      .++++++  .|+.|++|..
T Consensus       435 ~~~~s~s~~~d~~~~~w~~  453 (456)
T KOG0266|consen  435 NLIASSSFEGDGLIRLWKY  453 (456)
T ss_pred             CeeeecCcCCCceEEEecC
Confidence            8888887  6999999974

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=9.9e-34  Score=226.54  Aligned_cols=248  Identities=22%  Similarity=0.346  Sum_probs=210.1

Q ss_pred             eeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCC
Q 024372           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL   91 (268)
Q Consensus        12 ~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~   91 (268)
                      +.||..+|+.+-|+|   +-...++++.|.+|++||..+|++.+.++||++.|..++|+..|+++++++.|-.+++||..
T Consensus       104 l~g~r~~vt~v~~hp---~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~  180 (406)
T KOG0295|consen  104 LAGHRSSVTRVIFHP---SEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFD  180 (406)
T ss_pred             hhccccceeeeeecc---CceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHH
Confidence            458999999999997   55689999999999999999999999999999999999999999999999999999999987


Q ss_pred             CC-Cee-eeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCe
Q 024372           92 TG-DEK-HSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG  169 (268)
Q Consensus        92 ~~-~~~-~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~  169 (268)
                      +. .+. ....|...|.++.|-|.+..+++++.|++|+.|+..++... ..+..|...+..++.+. ++.++++|+.|.+
T Consensus       181 ~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv-~t~~~h~ewvr~v~v~~-DGti~As~s~dqt  258 (406)
T KOG0295|consen  181 TFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCV-KTFPGHSEWVRMVRVNQ-DGTIIASCSNDQT  258 (406)
T ss_pred             HHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeE-EeccCchHhEEEEEecC-CeeEEEecCCCce
Confidence            63 232 23458889999999999999999999999999999887654 44456677999999765 5578999999999


Q ss_pred             EEEEeCCCCceEEeec-CCCCEEEEEECCC---------------CcEEEE-eCCCeEEEEeCCCceeeeEEeCCCCc-e
Q 024372          170 VRLWDARSGKIVQTLE-TKSPVTSAEVSRD---------------GRYITT-ADGSSVKFWDANHFGLVKGYNMPCNT-E  231 (268)
Q Consensus       170 i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~---------------g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~~~-~  231 (268)
                      |++|-+.+++|...+. +..++.+++|.|.               +.++.+ +.|++|++||+.++.++-++..+.+. .
T Consensus       259 l~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr  338 (406)
T KOG0295|consen  259 LRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVR  338 (406)
T ss_pred             EEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceee
Confidence            9999999998877775 4567888888641               246554 46999999999999998888776664 4


Q ss_pred             eeEEcCCCCCEEEeccCCCeEEEEECCCCcEEee
Q 024372          232 SASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       232 ~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~  265 (268)
                      .++++| .|++++++.+|+.+++||+++++.+.+
T Consensus       339 ~~af~p-~Gkyi~ScaDDktlrvwdl~~~~cmk~  371 (406)
T KOG0295|consen  339 GVAFSP-GGKYILSCADDKTLRVWDLKNLQCMKT  371 (406)
T ss_pred             eeEEcC-CCeEEEEEecCCcEEEEEeccceeeec
Confidence            556666 699999999999999999999887764

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.6e-31  Score=222.82  Aligned_cols=242  Identities=21%  Similarity=0.349  Sum_probs=192.8

Q ss_pred             eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEee---CccCcEEEEEecCCCcEEEEeeCCCcEEEEe
Q 024372           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE---GHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (268)
Q Consensus        13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~---~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~   89 (268)
                      ..|.+.|+++.|+|   ||..+|+++.||++.+||..+|+.++.|.   +|++.|++++|+||+..++|+|.|+++||||
T Consensus       187 r~HskFV~~VRysP---DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWd  263 (603)
T KOG0318|consen  187 REHSKFVNCVRYSP---DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWD  263 (603)
T ss_pred             cccccceeeEEECC---CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEE
Confidence            47999999999995   99999999999999999999999999998   8999999999999999999999999999999


Q ss_pred             CCCCCeeeee--------------------------------------------ccCCeEEEEEECCCCCEEEEeeCCCe
Q 024372           90 ALTGDEKHSF--------------------------------------------EHKHIVRACAFSEDTHLLLTGGFEKI  125 (268)
Q Consensus        90 ~~~~~~~~~~--------------------------------------------~~~~~v~~v~~~~~~~~l~s~~~d~~  125 (268)
                      +.++.+.+++                                            .|...|+++..+++++.|++|+.||.
T Consensus       264 Vs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~  343 (603)
T KOG0318|consen  264 VSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGH  343 (603)
T ss_pred             eeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCce
Confidence            9776543332                                            26677999999999999999999999


Q ss_pred             EEEEECCCCCCCCe----------EecCCc--------------------------------------------------
Q 024372          126 LRIFDLNRPDAPPR----------EVGNSS--------------------------------------------------  145 (268)
Q Consensus       126 i~~~d~~~~~~~~~----------~~~~~~--------------------------------------------------  145 (268)
                      |.-||..++..-..          .+....                                                  
T Consensus       344 I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~  423 (603)
T KOG0318|consen  344 INSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVA  423 (603)
T ss_pred             EEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEE
Confidence            99999764321100          000000                                                  


Q ss_pred             --------------------ccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCc---eEEeecCCCCEEEEEECCCCcEE
Q 024372          146 --------------------GSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK---IVQTLETKSPVTSAEVSRDGRYI  202 (268)
Q Consensus       146 --------------------~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~---~~~~~~~~~~v~~~~~s~~g~~l  202 (268)
                                          -...+++.+|++ ..++.|+.|+.|+||.+..++   ....+++.+++.++++|||+.||
T Consensus       424 ~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~-~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yl  502 (603)
T KOG0318|consen  424 CISDIVLLQDQTKVSSIPIGYESSAVAVSPDG-SEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYL  502 (603)
T ss_pred             ecCcEEEEecCCcceeeccccccceEEEcCCC-CEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEE
Confidence                                012355655554 456667788999999997644   33556788899999999999999


Q ss_pred             EEeC-CCeEEEEeCCCcee-eeEEeCC-CCceeeEEcCCCCCEEEeccCCCeEEEEECCC
Q 024372          203 TTAD-GSSVKFWDANHFGL-VKGYNMP-CNTESASLEPKLGNIFIAGGEDMWVHVFDFHT  259 (268)
Q Consensus       203 ~~~~-~~~v~~wd~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~  259 (268)
                      ++++ .+.|.+||+..++. ...+..+ ..+..++|+| +..++++||.|..|++|+++.
T Consensus       503 a~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP-~n~~vATGSlDt~Viiysv~k  561 (603)
T KOG0318|consen  503 AAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSP-NNKLVATGSLDTNVIIYSVKK  561 (603)
T ss_pred             EEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCC-CceEEEeccccceEEEEEccC
Confidence            9875 68999999987654 3334433 3566778887 689999999999999999863

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.8e-31  Score=218.28  Aligned_cols=250  Identities=29%  Similarity=0.493  Sum_probs=207.6

Q ss_pred             EeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeC
Q 024372           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA   90 (268)
Q Consensus        11 ~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~   90 (268)
                      .+.+|.++|.+++|+|   ++++|++++.|+.+++|+..+++....+..|...+..+.|.+++.++++++.|+.+++|++
T Consensus         4 ~~~~h~~~i~~~~~~~---~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~   80 (289)
T cd00200           4 TLKGHTGGVTCVAFSP---DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDL   80 (289)
T ss_pred             HhcccCCCEEEEEEcC---CCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEc
Confidence            3568999999999985   7889999999999999999999888889999999999999999999999999999999999


Q ss_pred             CCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCe
Q 024372           91 LTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG  169 (268)
Q Consensus        91 ~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~  169 (268)
                      .+++....+. |...+.++.|+++++++++++.++.+++||+++.+. ......|...+.++.|+|++ .+++++..++.
T Consensus        81 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~  158 (289)
T cd00200          81 ETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC-LTTLRGHTDWVNSVAFSPDG-TFVASSSQDGT  158 (289)
T ss_pred             CcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEE-EEEeccCCCcEEEEEEcCcC-CEEEEEcCCCc
Confidence            8876655554 666899999999988998888899999999975432 33444567789999998874 45666665799


Q ss_pred             EEEEeCCCCceEEeecCC-CCEEEEEECCCCcEEE-EeCCCeEEEEeCCCceeeeEEeC-CCCceeeEEcCCCCCEEEec
Q 024372          170 VRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYIT-TADGSSVKFWDANHFGLVKGYNM-PCNTESASLEPKLGNIFIAG  246 (268)
Q Consensus       170 i~iwd~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~-~~~~~~v~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g  246 (268)
                      |++||+++++.+..+..+ ..+.++.++|+++.++ ++.++.|++||++....+..+.. ......+.+.+ ++.+++++
T Consensus       159 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~  237 (289)
T cd00200         159 IKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP-DGYLLASG  237 (289)
T ss_pred             EEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcC-CCcEEEEE
Confidence            999999998888877654 4799999999996655 45689999999998877777743 33556677776 48888888


Q ss_pred             cCCCeEEEEECCCCcEEeec
Q 024372          247 GEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       247 s~d~~i~~wd~~~g~~~~~~  266 (268)
                      +.|+.|++||+.+++.+..+
T Consensus       238 ~~~~~i~i~~~~~~~~~~~~  257 (289)
T cd00200         238 SEDGTIRVWDLRTGECVQTL  257 (289)
T ss_pred             cCCCcEEEEEcCCceeEEEc
Confidence            88999999999888776553

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=4.1e-31  Score=246.73  Aligned_cols=240  Identities=16%  Similarity=0.237  Sum_probs=196.0

Q ss_pred             eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecC-CCcEEEEeeCCCcEEEEeCC
Q 024372           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDA-NALFSASGSADFTAKLWDAL   91 (268)
Q Consensus        13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~-~~~~l~s~s~D~~v~iw~~~   91 (268)
                      ..+...|.+++|+|  +++.+||+++.|++|++||..+++.+..+.+|.+.|.+++|+| ++.+|+||+.|++|++||+.
T Consensus       529 ~~~~~~v~~l~~~~--~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~  606 (793)
T PLN00181        529 LASRSKLSGICWNS--YIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSIN  606 (793)
T ss_pred             ecccCceeeEEecc--CCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECC
Confidence            34567899999987  4678999999999999999999999999999999999999996 77899999999999999999


Q ss_pred             CCCeeeeeccCCeEEEEEEC-CCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeE
Q 024372           92 TGDEKHSFEHKHIVRACAFS-EDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (268)
Q Consensus        92 ~~~~~~~~~~~~~v~~v~~~-~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i  170 (268)
                      ++.....+.+...+.++.|+ +++..+++|+.|+.|++||++...........|...|.++.|. ++. .+++++.|++|
T Consensus       607 ~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~-~lvs~s~D~~i  684 (793)
T PLN00181        607 QGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSS-TLVSSSTDNTL  684 (793)
T ss_pred             CCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCC-EEEEEECCCEE
Confidence            98888888777788999995 5799999999999999999986554445556788899999996 343 56666778999


Q ss_pred             EEEeCCCC------ceEEeecCC-CCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeC--------------CC
Q 024372          171 RLWDARSG------KIVQTLETK-SPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNM--------------PC  228 (268)
Q Consensus       171 ~iwd~~~~------~~~~~~~~~-~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~--------------~~  228 (268)
                      +|||++.+      .+++.+..+ ..+..+.++|++.+++++ .|+.|++|+......+..+..              ..
T Consensus       685 kiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~  764 (793)
T PLN00181        685 KLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQ  764 (793)
T ss_pred             EEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCc
Confidence            99999853      456777654 458899999999998765 689999999865543333321              11


Q ss_pred             CceeeEEcCCCCCEEEeccCCCeEEEEEC
Q 024372          229 NTESASLEPKLGNIFIAGGEDMWVHVFDF  257 (268)
Q Consensus       229 ~~~~~~~~~~~~~~~~~gs~d~~i~~wd~  257 (268)
                      .+..+++.+ ++.+|++|+.|+.|++|++
T Consensus       765 ~V~~v~ws~-~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        765 FISSVCWRG-QSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             EEEEEEEcC-CCCeEEEecCCCcEEEEec
Confidence            244566666 6899999999999999986

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=8.9e-31  Score=229.44  Aligned_cols=226  Identities=20%  Similarity=0.288  Sum_probs=177.0

Q ss_pred             cEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCC-------CeEEEeeCccCcEEEEEecCCC-cEEEEee
Q 024372            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG-------DWIGTFEGHKGAVWSCCLDANA-LFSASGS   80 (268)
Q Consensus         9 ~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~-------~~~~~~~~h~~~V~~~~~~~~~-~~l~s~s   80 (268)
                      +..+.||.++|++++|+|.  ++++|++|+.|++|++||+.++       +.+..+.+|...|.+++|+|++ .+|++++
T Consensus        68 ~~~l~GH~~~V~~v~fsP~--d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs  145 (493)
T PTZ00421         68 PPILLGQEGPIIDVAFNPF--DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAG  145 (493)
T ss_pred             CceEeCCCCCEEEEEEcCC--CCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEe
Confidence            4457799999999999973  6789999999999999998765       3567899999999999999985 6899999


Q ss_pred             CCCcEEEEeCCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCccc-EEEEEEeCCCC
Q 024372           81 ADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGS-IRTVAWLHSDQ  158 (268)
Q Consensus        81 ~D~~v~iw~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~-v~~~~~~~~~~  158 (268)
                      .|++|+|||+.++.....+. |...|.+++|+|++.+|++++.|+.|++||++++.. ......|.+. ...+.|.+++.
T Consensus       146 ~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~-v~tl~~H~~~~~~~~~w~~~~~  224 (493)
T PTZ00421        146 ADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI-VSSVEAHASAKSQRCLWAKRKD  224 (493)
T ss_pred             CCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcE-EEEEecCCCCcceEEEEcCCCC
Confidence            99999999999988877775 788999999999999999999999999999987653 3334445443 44667888777


Q ss_pred             cEEEEee---CCCeEEEEeCCCCc-eEEeec--CCCCEEEEEECCCCcEEEE-e-CCCeEEEEeCCCceeeeEEeCCC--
Q 024372          159 TILSSCT---DSGGVRLWDARSGK-IVQTLE--TKSPVTSAEVSRDGRYITT-A-DGSSVKFWDANHFGLVKGYNMPC--  228 (268)
Q Consensus       159 ~~~~~~~---~d~~i~iwd~~~~~-~~~~~~--~~~~v~~~~~s~~g~~l~~-~-~~~~v~~wd~~~~~~~~~~~~~~--  228 (268)
                      .++++|.   .|++|++||+++.. .+....  ....+....++|++++++. + .|+.|++||+++...+.......  
T Consensus       225 ~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~  304 (493)
T PTZ00421        225 LIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVE  304 (493)
T ss_pred             eEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCC
Confidence            7776653   46899999998754 444433  2344666789999988764 4 48999999999887665544322  


Q ss_pred             CceeeEEcC
Q 024372          229 NTESASLEP  237 (268)
Q Consensus       229 ~~~~~~~~~  237 (268)
                      .....++.|
T Consensus       305 ~~~g~~~~p  313 (493)
T PTZ00421        305 PHKGLCMMP  313 (493)
T ss_pred             CCcceEecc
Confidence            234455554

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.6e-30  Score=212.56  Aligned_cols=242  Identities=27%  Similarity=0.448  Sum_probs=204.5

Q ss_pred             cEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEE
Q 024372            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLW   88 (268)
Q Consensus         9 ~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw   88 (268)
                      ...+.+|..++..+.|.|   ++++|++++.|+.+++|+..+++.+..+..|...|.++.|.+++.++++++.|+.+++|
T Consensus        44 ~~~~~~~~~~i~~~~~~~---~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~  120 (289)
T cd00200          44 LRTLKGHTGPVRDVAASA---DGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVW  120 (289)
T ss_pred             EEEEecCCcceeEEEECC---CCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEE
Confidence            345568999999999985   77899999999999999999988888999999999999999998888988889999999


Q ss_pred             eCCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCC
Q 024372           89 DALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS  167 (268)
Q Consensus        89 ~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d  167 (268)
                      |+.+++....+. |...+.++.|+|+++++++++.++.+++||++..+. ......+...+.++.|.+++..+++++ .+
T Consensus       121 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~  198 (289)
T cd00200         121 DVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC-VATLTGHTGEVNSVAFSPDGEKLLSSS-SD  198 (289)
T ss_pred             ECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccccc-ceeEecCccccceEEECCCcCEEEEec-CC
Confidence            999777777665 777899999999999999888899999999975543 344446677899999998876666554 47


Q ss_pred             CeEEEEeCCCCceEEee-cCCCCEEEEEECCCCcEEEEeC-CCeEEEEeCCCceeeeEEeCCC-CceeeEEcCCCCCEEE
Q 024372          168 GGVRLWDARSGKIVQTL-ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPC-NTESASLEPKLGNIFI  244 (268)
Q Consensus       168 ~~i~iwd~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~~~-~~~v~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  244 (268)
                      +.|++||+++++.+..+ .+...+.++.++|++.++++++ ++.|++||++..+.+..+..+. ....+.+.+ ++.+|+
T Consensus       199 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~  277 (289)
T cd00200         199 GTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSP-DGKRLA  277 (289)
T ss_pred             CcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECC-CCCEEE
Confidence            99999999999988888 4555799999999998888776 8999999999887777766443 355666766 589999


Q ss_pred             eccCCCeEEEEE
Q 024372          245 AGGEDMWVHVFD  256 (268)
Q Consensus       245 ~gs~d~~i~~wd  256 (268)
                      +++.|+.|++||
T Consensus       278 ~~~~d~~i~iw~  289 (289)
T cd00200         278 SGSADGTIRIWD  289 (289)
T ss_pred             EecCCCeEEecC
Confidence            999999999996

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.6e-31  Score=228.76  Aligned_cols=250  Identities=19%  Similarity=0.316  Sum_probs=209.1

Q ss_pred             cEEeeecCCCeeeEEEecCCCCCcEEEEEeCC-CCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEE
Q 024372            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKD-SSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKL   87 (268)
Q Consensus         9 ~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d-~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~i   87 (268)
                      .-.+.--..+|..++|+.   .|.+||.|+.- |.+.||+..+..++-...||...+.+++++|||+++|||+.||.|||
T Consensus       300 ih~LSis~~~I~t~~~N~---tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKv  376 (893)
T KOG0291|consen  300 IHSLSISDQKILTVSFNS---TGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKV  376 (893)
T ss_pred             EEEeecccceeeEEEecc---cCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEE
Confidence            333333456889999984   68899988654 78999999998888888999999999999999999999999999999


Q ss_pred             EeCCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEec-CCcccEEEEEEeCCCCcEEEEee
Q 024372           88 WDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG-NSSGSIRTVAWLHSDQTILSSCT  165 (268)
Q Consensus        88 w~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~  165 (268)
                      ||...+-|..+|. |...|+.++|+..++.+++.+-||++|.||+..... .+.+. ...-...|++..|.+..+++++-
T Consensus       377 Wn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN-fRTft~P~p~QfscvavD~sGelV~AG~~  455 (893)
T KOG0291|consen  377 WNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN-FRTFTSPEPIQFSCVAVDPSGELVCAGAQ  455 (893)
T ss_pred             EeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccce-eeeecCCCceeeeEEEEcCCCCEEEeecc
Confidence            9999999999985 999999999999999999999999999999975432 22222 22223567887777776666554


Q ss_pred             CCCeEEEEeCCCCceEEeecC-CCCEEEEEECCCCcEEEEe-CCCeEEEEeCCC-ceeeeEEeCCCCceeeEEcCCCCCE
Q 024372          166 DSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTA-DGSSVKFWDANH-FGLVKGYNMPCNTESASLEPKLGNI  242 (268)
Q Consensus       166 ~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  242 (268)
                      +.=.|++|++++|+.+-.+.+ .+||.+++|+|+|..|+++ -|.+||+||+-. ...+.++...+....+.+.| +|+.
T Consensus       456 d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrP-dG~e  534 (893)
T KOG0291|consen  456 DSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRP-DGKE  534 (893)
T ss_pred             ceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcC-CCCe
Confidence            444799999999999999975 5789999999999998875 599999999843 45678888888888999988 6999


Q ss_pred             EEeccCCCeEEEEECCCCcEE
Q 024372          243 FIAGGEDMWVHVFDFHTGEQI  263 (268)
Q Consensus       243 ~~~gs~d~~i~~wd~~~g~~~  263 (268)
                      ++.+..||.|-+||.+.+.++
T Consensus       535 laVaTldgqItf~d~~~~~q~  555 (893)
T KOG0291|consen  535 LAVATLDGQITFFDIKEAVQV  555 (893)
T ss_pred             EEEEEecceEEEEEhhhceee
Confidence            999999999999999877665

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=2.4e-33  Score=227.30  Aligned_cols=245  Identities=18%  Similarity=0.267  Sum_probs=201.3

Q ss_pred             EeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCc-cCcEEEEEecCCCcEEEEeeCCCcEEEEe
Q 024372           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH-KGAVWSCCLDANALFSASGSADFTAKLWD   89 (268)
Q Consensus        11 ~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h-~~~V~~~~~~~~~~~l~s~s~D~~v~iw~   89 (268)
                      ++..|..+|+++.|++   +|.++++|..+|.|++|+..-.. +..+.+| ...|++++|+|+...++|+|.|++|+|||
T Consensus       133 ilQaHDs~Vr~m~ws~---~g~wmiSgD~gG~iKyWqpnmnn-Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWd  208 (464)
T KOG0284|consen  133 ILQAHDSPVRTMKWSH---NGTWMISGDKGGMIKYWQPNMNN-VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWD  208 (464)
T ss_pred             HhhhhcccceeEEEcc---CCCEEEEcCCCceEEecccchhh-hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEe
Confidence            3468999999999984   89999999999999999986553 3445555 48999999999999999999999999999


Q ss_pred             CCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCC
Q 024372           90 ALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG  168 (268)
Q Consensus        90 ~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~  168 (268)
                      ....+..+.+. |.-.|+++.|+|...++++|+.|+.+++||.+++..... ...|+..|..+.|++.+ ++|++++.|.
T Consensus       209 f~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~t-lh~HKntVl~~~f~~n~-N~Llt~skD~  286 (464)
T KOG0284|consen  209 FRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLAT-LHGHKNTVLAVKFNPNG-NWLLTGSKDQ  286 (464)
T ss_pred             ccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhh-hhhccceEEEEEEcCCC-CeeEEccCCc
Confidence            98777655554 777899999999999999999999999999998776544 34677899999999877 7778888999


Q ss_pred             eEEEEeCCCCceEEeec-CCCCEEEEEECCCC-cEEE-EeCCCeEEEEeCCCceeeeEEeC--CCCceeeEEcCCCCCEE
Q 024372          169 GVRLWDARSGKIVQTLE-TKSPVTSAEVSRDG-RYIT-TADGSSVKFWDANHFGLVKGYNM--PCNTESASLEPKLGNIF  243 (268)
Q Consensus       169 ~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~g-~~l~-~~~~~~v~~wd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  243 (268)
                      .++++|+|+-+.+..+. +...+.+++|+|-. .+++ ++.|+.|..|.+...+++-....  ...+.+..++| -|++|
T Consensus       287 ~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hP-lGhil  365 (464)
T KOG0284|consen  287 SCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHP-LGHIL  365 (464)
T ss_pred             eEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccc-cceeE
Confidence            99999999888888887 45669999999964 3444 45789999999875555544433  34567888888 79999


Q ss_pred             EeccCCCeEEEEEC-CCCcE
Q 024372          244 IAGGEDMWVHVFDF-HTGEQ  262 (268)
Q Consensus       244 ~~gs~d~~i~~wd~-~~g~~  262 (268)
                      ++|+.|..+++|.- +.|+.
T Consensus       366 ~tgsnd~t~rfw~r~rp~d~  385 (464)
T KOG0284|consen  366 ATGSNDRTVRFWTRNRPGDK  385 (464)
T ss_pred             eecCCCcceeeeccCCCCCc
Confidence            99999999999963 23443

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4e-30  Score=202.78  Aligned_cols=255  Identities=23%  Similarity=0.282  Sum_probs=206.0

Q ss_pred             ceeeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEee--C
Q 024372            4 RKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS--A   81 (268)
Q Consensus         4 ~~~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s--~   81 (268)
                      +++..+.++..-.+.|++++|++   +|.+|++++.|.++++||..+|+.++++..++..|..++|......+..++  .
T Consensus         2 ~s~~~ak~f~~~~~~i~sl~fs~---~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~   78 (311)
T KOG1446|consen    2 RSFRPAKVFRETNGKINSLDFSD---DGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKE   78 (311)
T ss_pred             cccccccccccCCCceeEEEecC---CCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCC
Confidence            45677777876788999999984   999999999999999999999999999999999999999976655554444  4


Q ss_pred             CCcEEEEeCCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcE
Q 024372           82 DFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTI  160 (268)
Q Consensus        82 D~~v~iw~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  160 (268)
                      |.+||.-++.+++.++.+. |...|..++.+|-+..+++++.|++|++||++....+-..  .. ......+|.|+| .+
T Consensus        79 d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l--~~-~~~pi~AfDp~G-Li  154 (311)
T KOG1446|consen   79 DDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLL--NL-SGRPIAAFDPEG-LI  154 (311)
T ss_pred             CCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEE--ec-CCCcceeECCCC-cE
Confidence            9999999999999999885 9999999999998899999999999999999865433222  22 223456777765 56


Q ss_pred             EEEeeCCCeEEEEeCCCC--ceEEeec----CCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCCCc---
Q 024372          161 LSSCTDSGGVRLWDARSG--KIVQTLE----TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNT---  230 (268)
Q Consensus       161 ~~~~~~d~~i~iwd~~~~--~~~~~~~----~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~~~---  230 (268)
                      ++.+...+.|+|+|+|+-  .+..++.    ...+++.+.|||||+++.. ...+.+.+.|.-.+..+.++..+.+.   
T Consensus       155 fA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~  234 (311)
T KOG1446|consen  155 FALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNL  234 (311)
T ss_pred             EEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCc
Confidence            666666569999999974  3455553    3467999999999998765 46678999998888888888764332   


Q ss_pred             -eeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEeec
Q 024372          231 -ESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       231 -~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~~  266 (268)
                       ...++.| +++++++|+.||.|++|++++|+++++.
T Consensus       235 ~~~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~v~~~  270 (311)
T KOG1446|consen  235 PLSATFTP-DSKFVLSGSDDGTIHVWNLETGKKVAVL  270 (311)
T ss_pred             ceeEEECC-CCcEEEEecCCCcEEEEEcCCCcEeeEe
Confidence             3555556 7999999999999999999999999875

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=2.7e-33  Score=223.33  Aligned_cols=231  Identities=19%  Similarity=0.335  Sum_probs=189.3

Q ss_pred             cCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCC
Q 024372           15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD   94 (268)
Q Consensus        15 h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~   94 (268)
                      ..+.|.++.|.    | ..+++|+.|.+|+|||..+.++++.+.||++.|.++.|.  .+.++|||.|.+|++||++++.
T Consensus       196 ~skgVYClQYD----D-~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge  268 (499)
T KOG0281|consen  196 NSKGVYCLQYD----D-EKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGE  268 (499)
T ss_pred             cCCceEEEEec----c-hhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCc
Confidence            56689999995    4 468899999999999999999999999999999998885  5589999999999999999999


Q ss_pred             eeeee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCC--CeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEE
Q 024372           95 EKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP--PREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR  171 (268)
Q Consensus        95 ~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~  171 (268)
                      ++.++ .|-+.|..+.|+  ..++++++.|..|.+||+..+...  -....+|...|+.+.|..  . ++++++.|++|+
T Consensus       269 ~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--k-yIVsASgDRTik  343 (499)
T KOG0281|consen  269 PLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--K-YIVSASGDRTIK  343 (499)
T ss_pred             hhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--c-eEEEecCCceEE
Confidence            88776 477889999997  448999999999999999765421  122346888999998853  3 566667779999


Q ss_pred             EEeCCCCceEEeecCCCC-EEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeCCCCce-eeEEcCCCCCEEEeccC
Q 024372          172 LWDARSGKIVQTLETKSP-VTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTE-SASLEPKLGNIFIAGGE  248 (268)
Q Consensus       172 iwd~~~~~~~~~~~~~~~-v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~gs~  248 (268)
                      +|++.++++++++..|.. +.|+  --.|+++++| +|.+||+||+..+.+++....++... .+.|   +.+.+++|+.
T Consensus       344 vW~~st~efvRtl~gHkRGIACl--QYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF---d~krIVSGaY  418 (499)
T KOG0281|consen  344 VWSTSTCEFVRTLNGHKRGIACL--QYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF---DNKRIVSGAY  418 (499)
T ss_pred             EEeccceeeehhhhcccccceeh--hccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee---cCceeeeccc
Confidence            999999999999986644 4443  3356777764 68999999999999998888876543 3444   4778999999


Q ss_pred             CCeEEEEECCCCcE
Q 024372          249 DMWVHVFDFHTGEQ  262 (268)
Q Consensus       249 d~~i~~wd~~~g~~  262 (268)
                      ||+|++||+.++..
T Consensus       419 DGkikvWdl~aald  432 (499)
T KOG0281|consen  419 DGKIKVWDLQAALD  432 (499)
T ss_pred             cceEEEEecccccC
Confidence            99999999987653

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.5e-32  Score=207.94  Aligned_cols=240  Identities=20%  Similarity=0.236  Sum_probs=198.2

Q ss_pred             cCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCC-CeEEEeeCccCcEEEEEecCCC-cEEEEeeCCCcEEEEeCCC
Q 024372           15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG-DWIGTFEGHKGAVWSCCLDANA-LFSASGSADFTAKLWDALT   92 (268)
Q Consensus        15 h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~-~~~~~~~~h~~~V~~~~~~~~~-~~l~s~s~D~~v~iw~~~~   92 (268)
                      -++.+.+++|++.  ..+.+++++.||++++||.... ..+..++.|+..|.++.|.+.. +.++++|+|++||+|+...
T Consensus        59 ~~D~LfdV~Wse~--~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r  136 (311)
T KOG0277|consen   59 TEDGLFDVAWSEN--HENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR  136 (311)
T ss_pred             cccceeEeeecCC--CcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC
Confidence            4567889999984  4468999999999999995443 4788899999999999998754 5678889999999999999


Q ss_pred             CCeeeeec-cCCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeE
Q 024372           93 GDEKHSFE-HKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (268)
Q Consensus        93 ~~~~~~~~-~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i  170 (268)
                      .+.++++. |...|....|+| .++++++++.|+..++||++.+... ..+..|..++.+..|++.+.+++++|+-|+.|
T Consensus       137 ~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~-~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~v  215 (311)
T KOG0277|consen  137 PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKF-MSIEAHNSEILCCDWSKYNHNVLATGGVDNLV  215 (311)
T ss_pred             CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCce-eEEEeccceeEeecccccCCcEEEecCCCceE
Confidence            99888885 888999999999 6789999999999999999876433 34667788999999999999999999999999


Q ss_pred             EEEeCCCCc-eEEeecCCC-CEEEEEECCCCcE-EEE-eCCCeEEEEeCCC-ceeeeEEeCCCCc-eeeEEcCCCCCEEE
Q 024372          171 RLWDARSGK-IVQTLETKS-PVTSAEVSRDGRY-ITT-ADGSSVKFWDANH-FGLVKGYNMPCNT-ESASLEPKLGNIFI  244 (268)
Q Consensus       171 ~iwd~~~~~-~~~~~~~~~-~v~~~~~s~~g~~-l~~-~~~~~v~~wd~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~  244 (268)
                      |.||+|.-+ ++..+..|. .|..+++||...- |++ +-|-++||||... ..++.++..+... ..+.+++-.+.+++
T Consensus       216 r~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vA  295 (311)
T KOG0277|consen  216 RGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVA  295 (311)
T ss_pred             EEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceee
Confidence            999999854 455665544 5999999998754 443 4689999999874 4566677766654 44566666788999


Q ss_pred             eccCCCeEEEEEC
Q 024372          245 AGGEDMWVHVFDF  257 (268)
Q Consensus       245 ~gs~d~~i~~wd~  257 (268)
                      +.+.|+.++||+-
T Consensus       296 s~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  296 STGWDELLYVWNP  308 (311)
T ss_pred             ecccccceeeecc
Confidence            9999999999983

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=2.3e-31  Score=233.82  Aligned_cols=242  Identities=21%  Similarity=0.356  Sum_probs=199.3

Q ss_pred             eeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCC
Q 024372           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL   91 (268)
Q Consensus        12 ~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~   91 (268)
                      +.||++.|.+++|..   .+.+|++||.|+++++||..+|+++..|.+|.+.|+++...  ..++++||.|.+|++|++.
T Consensus       245 l~GH~g~V~~l~~~~---~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~  319 (537)
T KOG0274|consen  245 LVGHFGGVWGLAFPS---GGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVT  319 (537)
T ss_pred             ccCCCCCceeEEEec---CCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEecc
Confidence            679999999999963   46799999999999999999999999999999999887664  4567899999999999999


Q ss_pred             CCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeE
Q 024372           92 TGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (268)
Q Consensus        92 ~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i  170 (268)
                      ++..+..+. |..+|+++..+  +..+++|+.|+.|++||+...+.. .....|.+.|.++.+.+.  ..+.+|+-|++|
T Consensus       320 n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl-~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~I  394 (537)
T KOG0274|consen  320 NGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCL-KSLSGHTGRVYSLIVDSE--NRLLSGSLDTTI  394 (537)
T ss_pred             CcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceee-eeecCCcceEEEEEecCc--ceEEeeeeccce
Confidence            999999998 99999999988  779999999999999999866544 444568899999976543  456677778999


Q ss_pred             EEEeCCCC-ceEEeecCCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccC
Q 024372          171 RLWDARSG-KIVQTLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE  248 (268)
Q Consensus       171 ~iwd~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~  248 (268)
                      ++||+++. +|++++.++..+. -.+...++++++ +.|++|++||...+++++++..++ ...+.+.......+++++.
T Consensus       395 kvWdl~~~~~c~~tl~~h~~~v-~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~-~~~v~~l~~~~~~il~s~~  472 (537)
T KOG0274|consen  395 KVWDLRTKRKCIHTLQGHTSLV-SSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRH-VGGVSALALGKEEILCSSD  472 (537)
T ss_pred             EeecCCchhhhhhhhcCCcccc-cccccccceeEeccccccEEEeecccCceeeeeccCC-cccEEEeecCcceEEEEec
Confidence            99999999 9999998876543 233444556554 579999999999999999988751 1122222112478999999


Q ss_pred             CCeEEEEECCCCcEEee
Q 024372          249 DMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       249 d~~i~~wd~~~g~~~~~  265 (268)
                      |+.+++||+++|+.+..
T Consensus       473 ~~~~~l~dl~~~~~~~~  489 (537)
T KOG0274|consen  473 DGSVKLWDLRSGTLIRT  489 (537)
T ss_pred             CCeeEEEecccCchhhh
Confidence            99999999999987663

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.4e-31  Score=227.10  Aligned_cols=242  Identities=21%  Similarity=0.318  Sum_probs=201.3

Q ss_pred             eeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcE
Q 024372            6 VAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTA   85 (268)
Q Consensus         6 ~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v   85 (268)
                      +.-...++--+.||+++.|-+   -.+++++||.|..|+|++..+++.+.+|..|.+-|++++.+|...+++|+|.|-+|
T Consensus        45 qtmVksfeV~~~PvRa~kfia---RknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~i  121 (794)
T KOG0276|consen   45 QTMVKSFEVSEVPVRAAKFIA---RKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTI  121 (794)
T ss_pred             ceeeeeeeecccchhhheeee---ccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEE
Confidence            334455566678999999986   45699999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCC-eeeeec-cCCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCC-cEE
Q 024372           86 KLWDALTGD-EKHSFE-HKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ-TIL  161 (268)
Q Consensus        86 ~iw~~~~~~-~~~~~~-~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~  161 (268)
                      |+||.+..- +.++++ |.+.|..++|+| |.+.+++++-|+++++|.+..+. ....+..|...|+|+.|.+.+. -++
T Consensus       122 KlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~-~nfTl~gHekGVN~Vdyy~~gdkpyl  200 (794)
T KOG0276|consen  122 KLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH-PNFTLEGHEKGVNCVDYYTGGDKPYL  200 (794)
T ss_pred             EEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCC-CceeeeccccCcceEEeccCCCcceE
Confidence            999997654 566665 999999999999 77899999999999999998754 3455567888999999987663 378


Q ss_pred             EEeeCCCeEEEEeCCCCceEEeecCC-CCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCCC-ceeeEEcCC
Q 024372          162 SSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCN-TESASLEPK  238 (268)
Q Consensus       162 ~~~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~~-~~~~~~~~~  238 (268)
                      ++|+||.+|+|||.++..|++++++| ..|..+.|+|.-.++++ ++|++||||...+++..++++..-. ...+...+ 
T Consensus       201 IsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k-  279 (794)
T KOG0276|consen  201 ISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHK-  279 (794)
T ss_pred             EecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecC-
Confidence            88899999999999999999999965 45999999999888766 5799999999999988888876533 34444444 


Q ss_pred             CCCEEEeccCCCeE
Q 024372          239 LGNIFIAGGEDMWV  252 (268)
Q Consensus       239 ~~~~~~~gs~d~~i  252 (268)
                      .+..++.|...+.|
T Consensus       280 ~~~~i~vG~Deg~i  293 (794)
T KOG0276|consen  280 GDGKIAVGFDEGSV  293 (794)
T ss_pred             CCCeEEEeccCCcE
Confidence            34446666666544

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.7e-30  Score=199.77  Aligned_cols=244  Identities=21%  Similarity=0.357  Sum_probs=188.7

Q ss_pred             eeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCC---CeEEEe-eCccCcEEEEEecCCCcEEEEeeC
Q 024372            6 VAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG---DWIGTF-EGHKGAVWSCCLDANALFSASGSA   81 (268)
Q Consensus         6 ~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~---~~~~~~-~~h~~~V~~~~~~~~~~~l~s~s~   81 (268)
                      +.....+.+|.+.+..++|+|.  .|..||+++.|+.|++|+...+   .+...+ .+|+..|++++|+|.+++||++|.
T Consensus         4 l~~~~~~~gh~~r~W~~awhp~--~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSF   81 (312)
T KOG0645|consen    4 LILEQKLSGHKDRVWSVAWHPG--KGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASF   81 (312)
T ss_pred             ceeEEeecCCCCcEEEEEeccC--CceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeec
Confidence            3344556799999999999973  2779999999999999998853   344444 479999999999999999999999


Q ss_pred             CCcEEEEeCCCC--Ceeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCC--CCeEecCCcccEEEEEEeCC
Q 024372           82 DFTAKLWDALTG--DEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDA--PPREVGNSSGSIRTVAWLHS  156 (268)
Q Consensus        82 D~~v~iw~~~~~--~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~--~~~~~~~~~~~v~~~~~~~~  156 (268)
                      |.++-||.-..+  +++.+++ |.+.|.+++|+++|++||+++.|+.+=+|.+..+..  -...+..|...|..+.|.|.
T Consensus        82 D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt  161 (312)
T KOG0645|consen   82 DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPT  161 (312)
T ss_pred             cceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCC
Confidence            999999986644  3566664 889999999999999999999999999998763321  12334567778999999875


Q ss_pred             CCcEEEEeeCCCeEEEEeCCCC---ceEEeecCC-CCEEEEEECCCCcE-EEEeCCCeEEEEeCCCceeeeEEeCCCCce
Q 024372          157 DQTILSSCTDSGGVRLWDARSG---KIVQTLETK-SPVTSAEVSRDGRY-ITTADGSSVKFWDANHFGLVKGYNMPCNTE  231 (268)
Q Consensus       157 ~~~~~~~~~~d~~i~iwd~~~~---~~~~~~~~~-~~v~~~~~s~~g~~-l~~~~~~~v~~wd~~~~~~~~~~~~~~~~~  231 (268)
                      . -+|++++.|++||+|+-..+   ++++++..+ ..|-+++|+|.|.. +.+++|++|+||.+...  +.. .+.....
T Consensus       162 ~-dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~--~~~-~~sr~~Y  237 (312)
T KOG0645|consen  162 E-DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD--LSG-MHSRALY  237 (312)
T ss_pred             c-ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC--cch-hcccceE
Confidence            4 47778899999999987632   578888765 47999999999955 45678899999986521  100 0111223


Q ss_pred             eeEEcCCCCCEEEeccCCCeEEEEECC
Q 024372          232 SASLEPKLGNIFIAGGEDMWVHVFDFH  258 (268)
Q Consensus       232 ~~~~~~~~~~~~~~gs~d~~i~~wd~~  258 (268)
                      .+.+.   ...+++|+.|+.|++|.-.
T Consensus       238 ~v~W~---~~~IaS~ggD~~i~lf~~s  261 (312)
T KOG0645|consen  238 DVPWD---NGVIASGGGDDAIRLFKES  261 (312)
T ss_pred             eeeec---ccceEeccCCCEEEEEEec
Confidence            34443   5679999999999999754

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=3.1e-30  Score=240.80  Aligned_cols=244  Identities=16%  Similarity=0.213  Sum_probs=190.6

Q ss_pred             eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCC----C----eEEEeeCccCcEEEEEecC-CCcEEEEeeCCC
Q 024372           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG----D----WIGTFEGHKGAVWSCCLDA-NALFSASGSADF   83 (268)
Q Consensus        13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~----~----~~~~~~~h~~~V~~~~~~~-~~~~l~s~s~D~   83 (268)
                      .+|.+.|.+++|+|   +|++||+|+.|++|+||+....    .    .+..+.+ ...|.+++|++ ++.++++++.|+
T Consensus       480 ~~~~~~V~~i~fs~---dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~las~~~Dg  555 (793)
T PLN00181        480 LNSSNLVCAIGFDR---DGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-RSKLSGICWNSYIKSQVASSNFEG  555 (793)
T ss_pred             cCCCCcEEEEEECC---CCCEEEEEeCCCEEEEEECCcccccccccccceEEecc-cCceeeEEeccCCCCEEEEEeCCC
Confidence            35999999999995   8999999999999999997532    1    2233443 46788999986 467899999999


Q ss_pred             cEEEEeCCCCCeeeee-ccCCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEE
Q 024372           84 TAKLWDALTGDEKHSF-EHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTIL  161 (268)
Q Consensus        84 ~v~iw~~~~~~~~~~~-~~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  161 (268)
                      +|++||+.+++....+ .|...|.+++|+| ++.+|++|+.|+.|++||++.+... ..... ...+.++.|.++++.++
T Consensus       556 ~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~-~~~~~-~~~v~~v~~~~~~g~~l  633 (793)
T PLN00181        556 VVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSI-GTIKT-KANICCVQFPSESGRSL  633 (793)
T ss_pred             eEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEE-EEEec-CCCeEEEEEeCCCCCEE
Confidence            9999999988877766 4888999999997 7889999999999999999865432 33333 35788999977777788


Q ss_pred             EEeeCCCeEEEEeCCCCc-eEEeec-CCCCEEEEEECCCCcEEEEeCCCeEEEEeCCC------ceeeeEEeCCCCc-ee
Q 024372          162 SSCTDSGGVRLWDARSGK-IVQTLE-TKSPVTSAEVSRDGRYITTADGSSVKFWDANH------FGLVKGYNMPCNT-ES  232 (268)
Q Consensus       162 ~~~~~d~~i~iwd~~~~~-~~~~~~-~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~------~~~~~~~~~~~~~-~~  232 (268)
                      ++|+.|+.|++||+++.+ .+..+. +...+.++.|.+...+++++.|+.|++||++.      ..++..+..+... ..
T Consensus       634 atgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~  713 (793)
T PLN00181        634 AFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNF  713 (793)
T ss_pred             EEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeE
Confidence            888899999999998865 455554 44579999998544455567899999999974      2456666655443 44


Q ss_pred             eEEcCCCCCEEEeccCCCeEEEEECCCCcEE
Q 024372          233 ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (268)
Q Consensus       233 ~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~  263 (268)
                      +.+.+ ++.+|++|+.|+.|++|+...+.++
T Consensus       714 v~~s~-~~~~lasgs~D~~v~iw~~~~~~~~  743 (793)
T PLN00181        714 VGLSV-SDGYIATGSETNEVFVYHKAFPMPV  743 (793)
T ss_pred             EEEcC-CCCEEEEEeCCCEEEEEECCCCCce
Confidence            55665 5899999999999999997655433

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=6.5e-31  Score=210.53  Aligned_cols=253  Identities=15%  Similarity=0.255  Sum_probs=206.7

Q ss_pred             ecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEE
Q 024372            8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKL   87 (268)
Q Consensus         8 ~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~i   87 (268)
                      ....|..|+.+|.+++.+|   +.++++||+.|....+|+..+|++...+.+|++.|.++.|+.++.+||||..+|.|+|
T Consensus        56 S~~tF~~H~~svFavsl~P---~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v  132 (399)
T KOG0296|consen   56 SLVTFDKHTDSVFAVSLHP---NNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLV  132 (399)
T ss_pred             ceeehhhcCCceEEEEeCC---CCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEE
Confidence            3455678999999999997   6679999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeC
Q 024372           88 WDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTD  166 (268)
Q Consensus        88 w~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  166 (268)
                      |+..++.....+. .-+.+-=+.|||-+.+|+.|+.||.+-+|.+++. ...+.+.+|+.++++=.|.|+++.++ ++.+
T Consensus       133 ~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~-~~~kv~~Gh~~~ct~G~f~pdGKr~~-tgy~  210 (399)
T KOG0296|consen  133 FKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ-ALCKVMSGHNSPCTCGEFIPDGKRIL-TGYD  210 (399)
T ss_pred             EEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCc-ceeeEecCCCCCcccccccCCCceEE-EEec
Confidence            9999998877774 3344556889999999999999999999999864 45667778889999999999976655 5677


Q ss_pred             CCeEEEEeCCCCceEEeecC------C-----------------C----------CE-------------------EEEE
Q 024372          167 SGGVRLWDARSGKIVQTLET------K-----------------S----------PV-------------------TSAE  194 (268)
Q Consensus       167 d~~i~iwd~~~~~~~~~~~~------~-----------------~----------~v-------------------~~~~  194 (268)
                      ||+|++||+.+++++..+..      +                 +          .|                   .++.
T Consensus       211 dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve  290 (399)
T KOG0296|consen  211 DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVE  290 (399)
T ss_pred             CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhh
Confidence            89999999999998876651      0                 0          00                   0111


Q ss_pred             ECCC---CcEEEEe-CCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEeecc
Q 024372          195 VSRD---GRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAITS  267 (268)
Q Consensus       195 ~s~~---g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~~~  267 (268)
                      +.|-   =.+.+++ =|++|-|||+.+...-+.+.+...+..+-|.+  ..+|++++.|+.||.||.++|+.+.+++
T Consensus       291 ~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~  365 (399)
T KOG0296|consen  291 SIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYT  365 (399)
T ss_pred             hcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEe
Confidence            1111   1233343 37899999998877667777777777777775  6889999999999999999999998864

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=4.9e-33  Score=221.80  Aligned_cols=245  Identities=19%  Similarity=0.293  Sum_probs=191.4

Q ss_pred             CcceeeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeC
Q 024372            2 DKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSA   81 (268)
Q Consensus         2 ~~~~~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~   81 (268)
                      |+..+.+...+.||++.|.++.|.     ...+++||.|.+|+|||+++|+.+.++-+|...|.-+.|+  +.+++|+|.
T Consensus       223 D~n~~~c~~~L~GHtGSVLCLqyd-----~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSk  295 (499)
T KOG0281|consen  223 DKNSLECLKILTGHTGSVLCLQYD-----ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSK  295 (499)
T ss_pred             ccccHHHHHhhhcCCCcEEeeecc-----ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecC
Confidence            566677777889999999999994     4699999999999999999999999999999999999997  458899999


Q ss_pred             CCcEEEEeCCCCCeee----eeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCC
Q 024372           82 DFTAKLWDALTGDEKH----SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSD  157 (268)
Q Consensus        82 D~~v~iw~~~~~~~~~----~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~  157 (268)
                      |+++.+||+.......    ...|...|+.+.|+  .+++++++.|++|++|++.+.+. .+.+..|+-.|-|+.|.   
T Consensus       296 DrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~ef-vRtl~gHkRGIAClQYr---  369 (499)
T KOG0281|consen  296 DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEF-VRTLNGHKRGIACLQYR---  369 (499)
T ss_pred             CceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceee-ehhhhcccccceehhcc---
Confidence            9999999986544211    12478889999885  56999999999999999876543 35566777788887763   


Q ss_pred             CcEEEEeeCCCeEEEEeCCCCceEEeecCCCC-EEEEEECCCCcEEEEeCCCeEEEEeCCCceeee---------EEeCC
Q 024372          158 QTILSSCTDSGGVRLWDARSGKIVQTLETKSP-VTSAEVSRDGRYITTADGSSVKFWDANHFGLVK---------GYNMP  227 (268)
Q Consensus       158 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~-v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~---------~~~~~  227 (268)
                      +.++++|+.|++||+||+..|.+++.+++|.. |.++-|.. .+.++++-||+|++||+....-.+         +.-.+
T Consensus       370 ~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~-krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~h  448 (499)
T KOG0281|consen  370 DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN-KRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEH  448 (499)
T ss_pred             CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecC-ceeeeccccceEEEEecccccCCcccccchHHHhhhhc
Confidence            46788888999999999999999999998766 67777753 345556679999999997642211         11111


Q ss_pred             CCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcE
Q 024372          228 CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ  262 (268)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~  262 (268)
                      ++ ..+.... +...+++++-|..|.+||+.+|-.
T Consensus       449 sg-RVFrLQF-D~fqIvsssHddtILiWdFl~~~~  481 (499)
T KOG0281|consen  449 SG-RVFRLQF-DEFQIISSSHDDTILIWDFLNGPP  481 (499)
T ss_pred             cc-eeEEEee-cceEEEeccCCCeEEEEEcCCCCc
Confidence            11 1222333 356788999999999999976643

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=5e-31  Score=227.34  Aligned_cols=250  Identities=20%  Similarity=0.284  Sum_probs=206.3

Q ss_pred             eeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCC
Q 024372           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL   91 (268)
Q Consensus        12 ~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~   91 (268)
                      +-|-.++|.++.|--  |+-++||.|++...+|+++..+..+. -+.||+..|.++....+|.+|+|||.|+++++|.++
T Consensus       319 ivG~ndEI~Dm~~lG--~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~  395 (775)
T KOG0319|consen  319 IVGYNDEILDMKFLG--PEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLN  395 (775)
T ss_pred             hcCCchhheeeeecC--CccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEec
Confidence            347788999999964  56689999999999999998887776 789999999999977788899999999999999885


Q ss_pred             CCCeee-----eeccCCeEEEEEECCC-CCEEEEeeCCCeEEEEECCCCCC--CCe------EecCCcccEEEEEEeCCC
Q 024372           92 TGDEKH-----SFEHKHIVRACAFSED-THLLLTGGFEKILRIFDLNRPDA--PPR------EVGNSSGSIRTVAWLHSD  157 (268)
Q Consensus        92 ~~~~~~-----~~~~~~~v~~v~~~~~-~~~l~s~~~d~~i~~~d~~~~~~--~~~------~~~~~~~~v~~~~~~~~~  157 (268)
                      .+....     ...|.+.|.+++++.. ...|+++|.|.++++|++...+.  .+.      ....|.-.|++++++|++
T Consensus       396 ~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~nd  475 (775)
T KOG0319|consen  396 NNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPND  475 (775)
T ss_pred             CCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCC
Confidence            444322     2248889999999774 46899999999999999875211  111      123467789999998876


Q ss_pred             CcEEEEeeCCCeEEEEeCCCCceEEeecCCC-CEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCCC-ceeeE
Q 024372          158 QTILSSCTDSGGVRLWDARSGKIVQTLETKS-PVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCN-TESAS  234 (268)
Q Consensus       158 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~-~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~~-~~~~~  234 (268)
                       .++++|+.|++.+||+++..+...++.+|. .+-++.|+|+.+.+++ +.|.+|+||.+.++.+++++..+.. +....
T Consensus       476 -kLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~  554 (775)
T KOG0319|consen  476 -KLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRAS  554 (775)
T ss_pred             -ceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeee
Confidence             588899999999999999999999998654 5999999999888765 6789999999999999999997654 44555


Q ss_pred             EcCCCCCEEEeccCCCeEEEEECCCCcEEeec
Q 024372          235 LEPKLGNIFIAGGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       235 ~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~~  266 (268)
                      |-. .|+.|++|+.||.|++|++++++.+..+
T Consensus       555 F~~-~~~qliS~~adGliKlWnikt~eC~~tl  585 (775)
T KOG0319|consen  555 FIR-NGKQLISAGADGLIKLWNIKTNECEMTL  585 (775)
T ss_pred             eee-CCcEEEeccCCCcEEEEeccchhhhhhh
Confidence            554 6999999999999999999998876543

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.5e-30  Score=199.95  Aligned_cols=238  Identities=21%  Similarity=0.410  Sum_probs=187.9

Q ss_pred             eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCC--CeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeC
Q 024372           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG--DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA   90 (268)
Q Consensus        13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~--~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~   90 (268)
                      .+|+..|++++|+|   .|++||+||.|.++.||.-..+  +++.+|+||+..|-+++|+++|.+|||+++|+.|-||.+
T Consensus        58 ~~hkrsVRsvAwsp---~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~  134 (312)
T KOG0645|consen   58 DGHKRSVRSVAWSP---HGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEI  134 (312)
T ss_pred             ccchheeeeeeecC---CCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEe
Confidence            47999999999995   8999999999999999987766  578999999999999999999999999999999999998


Q ss_pred             CCCCe---eeee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECC-CCC-CCCeEecCCcccEEEEEEeCCCCcEEEEe
Q 024372           91 LTGDE---KHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLN-RPD-APPREVGNSSGSIRTVAWLHSDQTILSSC  164 (268)
Q Consensus        91 ~~~~~---~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~-~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  164 (268)
                      .....   ...+ +|..-|..+.|+|...+|+++++|++|++|.-. ... ...+.+..|...|.+++|.+.+. -++++
T Consensus       135 deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~-rl~s~  213 (312)
T KOG0645|consen  135 DEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGS-RLVSC  213 (312)
T ss_pred             cCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCc-eEEEe
Confidence            75553   3333 488889999999988899999999999999754 222 22456667777999999988775 46678


Q ss_pred             eCCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEeCCCeEEEEeCCC------ceeeeEE-e-CCCCceeeEEc
Q 024372          165 TDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANH------FGLVKGY-N-MPCNTESASLE  236 (268)
Q Consensus       165 ~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~------~~~~~~~-~-~~~~~~~~~~~  236 (268)
                      ++|++++||-..+.   -...+..++..+.|. +|.+.+++.|+.|++|.-..      ++.+-.. . +...+.++.+.
T Consensus       214 sdD~tv~Iw~~~~~---~~~~~sr~~Y~v~W~-~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~  289 (312)
T KOG0645|consen  214 SDDGTVSIWRLYTD---LSGMHSRALYDVPWD-NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWN  289 (312)
T ss_pred             cCCcceEeeeeccC---cchhcccceEeeeec-ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEc
Confidence            89999999986621   112244668889999 77666667889999997542      1111111 1 12246678888


Q ss_pred             CCCCCEEEeccCCCeEEEEECC
Q 024372          237 PKLGNIFIAGGEDMWVHVFDFH  258 (268)
Q Consensus       237 ~~~~~~~~~gs~d~~i~~wd~~  258 (268)
                      |..+.+|++||.||.|++|.+.
T Consensus       290 p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  290 PKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             CCCCCceeecCCCceEEEEEec
Confidence            8667899999999999999864

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=2.3e-31  Score=212.79  Aligned_cols=240  Identities=20%  Similarity=0.351  Sum_probs=202.9

Q ss_pred             EeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeC
Q 024372           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA   90 (268)
Q Consensus        11 ~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~   90 (268)
                      .+.||-+.|.++++++..|   ||++++.|+.|+-||++.++.++.+.||-..|++++..|.-+.++||++|.++|+||+
T Consensus       188 tltGhi~~vr~vavS~rHp---YlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDi  264 (460)
T KOG0285|consen  188 TLTGHIETVRGVAVSKRHP---YLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDI  264 (460)
T ss_pred             eecchhheeeeeeecccCc---eEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeee
Confidence            3468999999999998777   9999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCe
Q 024372           91 LTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG  169 (268)
Q Consensus        91 ~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~  169 (268)
                      .+...+..+. |..+|..+.+.|-...+++|+.|++|++||++.++.. ....+|+-.+.+++..|.. +++++++. ..
T Consensus       265 Rtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~-~tlt~hkksvral~lhP~e-~~fASas~-dn  341 (460)
T KOG0285|consen  265 RTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTM-ITLTHHKKSVRALCLHPKE-NLFASASP-DN  341 (460)
T ss_pred             cccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCcee-EeeecccceeeEEecCCch-hhhhccCC-cc
Confidence            9999988886 9999999999986667899999999999999876543 4445778889999977654 56667666 46


Q ss_pred             EEEEeCCCCceEEeecCCC-CEEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEe---CC------CCceeeEEcCCC
Q 024372          170 VRLWDARSGKIVQTLETKS-PVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYN---MP------CNTESASLEPKL  239 (268)
Q Consensus       170 i~iwd~~~~~~~~~~~~~~-~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~---~~------~~~~~~~~~~~~  239 (268)
                      |+-|++..|+.++.+..+. -+++++...||-++++++++.+.+||.+.+-..+...   .+      .++...+|.. .
T Consensus       342 ik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDk-t  420 (460)
T KOG0285|consen  342 IKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDK-T  420 (460)
T ss_pred             ceeccCCccchhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecc-c
Confidence            9999999999888887654 4899999999988888899999999998764433332   11      1223445554 7


Q ss_pred             CCEEEeccCCCeEEEEEC
Q 024372          240 GNIFIAGGEDMWVHVFDF  257 (268)
Q Consensus       240 ~~~~~~gs~d~~i~~wd~  257 (268)
                      |..|++|..|..|++|.-
T Consensus       421 g~rlit~eadKtIk~~ke  438 (460)
T KOG0285|consen  421 GSRLITGEADKTIKMYKE  438 (460)
T ss_pred             CceEEeccCCcceEEEec
Confidence            999999999999999974

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1e-30  Score=204.73  Aligned_cols=244  Identities=23%  Similarity=0.338  Sum_probs=203.9

Q ss_pred             eeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCc-EEEEeeCCCc
Q 024372            6 VAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANAL-FSASGSADFT   84 (268)
Q Consensus         6 ~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~-~l~s~s~D~~   84 (268)
                      ++..-++.+|++.|..+.|.   +|+..+++++.|++++.||.++|+.++.+++|..-|.++.-..-|. ++.|++.|++
T Consensus        80 ceN~~~lkgHsgAVM~l~~~---~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t  156 (338)
T KOG0265|consen   80 CENFWVLKGHSGAVMELHGM---RDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGT  156 (338)
T ss_pred             ccceeeeccccceeEeeeec---cCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCce
Confidence            44555566999999999998   4999999999999999999999999999999999999998555554 5678999999


Q ss_pred             EEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEe
Q 024372           85 AKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC  164 (268)
Q Consensus        85 v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  164 (268)
                      +|+||+.....+.+++.+.+++++.|..++..+++|+-|+.|++||++..... ....+|.+.|+.+..++++..++ +-
T Consensus       157 ~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~-~~lsGh~DtIt~lsls~~gs~ll-sn  234 (338)
T KOG0265|consen  157 LKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGL-YTLSGHADTITGLSLSRYGSFLL-SN  234 (338)
T ss_pred             EEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcce-EEeecccCceeeEEeccCCCccc-cc
Confidence            99999999999999999999999999999999999999999999999865543 44557889999999998887555 55


Q ss_pred             eCCCeEEEEeCCC----CceEEeecCC-----CCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCCCce-ee
Q 024372          165 TDSGGVRLWDARS----GKIVQTLETK-----SPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNTE-SA  233 (268)
Q Consensus       165 ~~d~~i~iwd~~~----~~~~~~~~~~-----~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~~~~-~~  233 (268)
                      +-|+++++||.|-    .++++.++.+     .....++|+|+++++.+ +.|+.+.+||....+.+..++.+.+.. ..
T Consensus       235 sMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~  314 (338)
T KOG0265|consen  235 SMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEV  314 (338)
T ss_pred             cccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEe
Confidence            6779999999974    4567777643     23678899999999875 578999999998877777677666544 45


Q ss_pred             EEcCCCCCEEEeccCCCeEEEE
Q 024372          234 SLEPKLGNIFIAGGEDMWVHVF  255 (268)
Q Consensus       234 ~~~~~~~~~~~~gs~d~~i~~w  255 (268)
                      .|.| .-.++.+++.|++|++=
T Consensus       315 ~Fhp-~e~iils~~sdk~i~lg  335 (338)
T KOG0265|consen  315 DFHP-TEPIILSCSSDKTIYLG  335 (338)
T ss_pred             eecC-CCcEEEEeccCceeEee
Confidence            5555 68899999999999873

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=1.4e-29  Score=221.95  Aligned_cols=247  Identities=14%  Similarity=0.196  Sum_probs=182.5

Q ss_pred             ecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeE-------------EEeeCccCcEEEEEecC-CCcEEEEe
Q 024372           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWI-------------GTFEGHKGAVWSCCLDA-NALFSASG   79 (268)
Q Consensus        14 ~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~-------------~~~~~h~~~V~~~~~~~-~~~~l~s~   79 (268)
                      .|-..|+...+.   +|+..+++++.+.....|+...+..+             ..+.+|++.|.+++|+| ++.+|++|
T Consensus        18 ~~~~~i~~~~~~---~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSg   94 (493)
T PTZ00421         18 RHFLNVTPSTAL---WDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTA   94 (493)
T ss_pred             cceecccccccc---CCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEE
Confidence            444555544443   47667777877777777765433222             24789999999999999 78899999


Q ss_pred             eCCCcEEEEeCCCCC-------eeeee-ccCCeEEEEEECCCC-CEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEE
Q 024372           80 SADFTAKLWDALTGD-------EKHSF-EHKHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRT  150 (268)
Q Consensus        80 s~D~~v~iw~~~~~~-------~~~~~-~~~~~v~~v~~~~~~-~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~  150 (268)
                      +.|++|++||+.++.       ++..+ .|...|.+++|+|++ ++|++|+.|++|++||++++.. ...+..|...|.+
T Consensus        95 S~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~-~~~l~~h~~~V~s  173 (493)
T PTZ00421         95 SEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA-VEVIKCHSDQITS  173 (493)
T ss_pred             eCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeE-EEEEcCCCCceEE
Confidence            999999999997643       22333 488899999999975 7999999999999999986543 3455567789999


Q ss_pred             EEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCC--CEEEEEECCCCcEEEE-e----CCCeEEEEeCCCce-eee
Q 024372          151 VAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS--PVTSAEVSRDGRYITT-A----DGSSVKFWDANHFG-LVK  222 (268)
Q Consensus       151 ~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~--~v~~~~~s~~g~~l~~-~----~~~~v~~wd~~~~~-~~~  222 (268)
                      ++|++++. ++++++.|++|+|||+++++.+.++..+.  ....+.|.|++..+++ +    .|+.|++||+++.. .+.
T Consensus       174 la~spdG~-lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~  252 (493)
T PTZ00421        174 LEWNLDGS-LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYS  252 (493)
T ss_pred             EEEECCCC-EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCcee
Confidence            99998765 56677788999999999999988876543  2456788888766543 3    36899999998754 344


Q ss_pred             EEeCCC-CceeeEEcCCCCCEEEecc-CCCeEEEEECCCCcEEee
Q 024372          223 GYNMPC-NTESASLEPKLGNIFIAGG-EDMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       223 ~~~~~~-~~~~~~~~~~~~~~~~~gs-~d~~i~~wd~~~g~~~~~  265 (268)
                      ...... ......+..+++.+|++|+ .|+.|++||+.+++++..
T Consensus       253 ~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~  297 (493)
T PTZ00421        253 TVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFC  297 (493)
T ss_pred             EeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEE
Confidence            333322 2223333334688888877 599999999998887654

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.4e-31  Score=232.36  Aligned_cols=250  Identities=20%  Similarity=0.310  Sum_probs=203.8

Q ss_pred             eeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCC
Q 024372           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL   91 (268)
Q Consensus        12 ~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~   91 (268)
                      |+.-+..|.+++|+|..|   +++++-..|.|++||-+-+.++..|..|.++|+.+.|+|++.+++||+.|-.|++|+..
T Consensus         5 fEskSsRvKglsFHP~rP---wILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk   81 (1202)
T KOG0292|consen    5 FESKSSRVKGLSFHPKRP---WILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK   81 (1202)
T ss_pred             hhcccccccceecCCCCC---EEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecc
Confidence            455677899999998555   99999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeeeee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeE
Q 024372           92 TGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (268)
Q Consensus        92 ~~~~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i  170 (268)
                      +..+..++ .|-+.|+.+.||+.-.+++++|.|.+|++|+..++.. .....+|...|.|.+|.|... ++++++-|.+|
T Consensus        82 ~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~-iavltGHnHYVMcAqFhptED-lIVSaSLDQTV  159 (1202)
T KOG0292|consen   82 TRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKC-IAVLTGHNHYVMCAQFHPTED-LIVSASLDQTV  159 (1202)
T ss_pred             cceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCce-EEEEecCceEEEeeccCCccc-eEEEecccceE
Confidence            99887776 5999999999999999999999999999999876543 455667888999999887555 55566777999


Q ss_pred             EEEeCCCCc---------------------------eE--EeecCC-CCEEEEEECCCCcEEEE-eCCCeEEEEeCCCce
Q 024372          171 RLWDARSGK---------------------------IV--QTLETK-SPVTSAEVSRDGRYITT-ADGSSVKFWDANHFG  219 (268)
Q Consensus       171 ~iwd~~~~~---------------------------~~--~~~~~~-~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~  219 (268)
                      |+||+..-+                           ++  +.+++| ..|+-++|+|.--++++ ++|+.|++|.+...+
T Consensus       160 RVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK  239 (1202)
T KOG0292|consen  160 RVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK  239 (1202)
T ss_pred             EEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccc
Confidence            999985211                           11  223333 35899999999877766 478999999985432


Q ss_pred             --eeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEeec
Q 024372          220 --LVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       220 --~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~~  266 (268)
                        .+.+...+.+..++.++.+--+++++.|+|+.|+|||+.....+.++
T Consensus       240 aWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tf  288 (1202)
T KOG0292|consen  240 AWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTF  288 (1202)
T ss_pred             ceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeee
Confidence              24455555555555555445788999999999999999877777765

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=100.00  E-value=6.4e-31  Score=206.94  Aligned_cols=214  Identities=27%  Similarity=0.423  Sum_probs=180.4

Q ss_pred             EEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC------------C------CeEEEeeCccCcEEEEEecC
Q 024372           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET------------G------DWIGTFEGHKGAVWSCCLDA   71 (268)
Q Consensus        10 ~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~------------~------~~~~~~~~h~~~V~~~~~~~   71 (268)
                      ..+..|..++++.+|+|   ||.++|+||.|..|+|.|++.            |      -.+++|-.|.+.|..+.|+|
T Consensus       106 ~ylt~HK~~cR~aafs~---DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP  182 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSP---DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP  182 (430)
T ss_pred             EEEeecccceeeeeeCC---CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc
Confidence            44568999999999985   999999999999999999871            1      25788889999999999999


Q ss_pred             CCcEEEEeeCCCcEEEEeCCCCCeee---eeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCC--eEecCCcc
Q 024372           72 NALFSASGSADFTAKLWDALTGDEKH---SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP--REVGNSSG  146 (268)
Q Consensus        72 ~~~~l~s~s~D~~v~iw~~~~~~~~~---~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~--~~~~~~~~  146 (268)
                      ...+|+||+.|++|+++|......++   .+...++|++++|+|.|.+|+.|..-.++++||+++.+.-.  .-...|.+
T Consensus       183 re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~  262 (430)
T KOG0640|consen  183 RETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTG  262 (430)
T ss_pred             hhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccc
Confidence            99999999999999999986544333   33456789999999999999999999999999998654322  22346788


Q ss_pred             cEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeec---CCCCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeee
Q 024372          147 SIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE---TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVK  222 (268)
Q Consensus       147 ~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~  222 (268)
                      .|+++.|++.+ .+.++++.||.|||||--+++|+.++.   ....|.++.|+.+|+|+.++ -|..|++|.+.++++++
T Consensus       263 ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~  341 (430)
T KOG0640|consen  263 AITQVRYSSTG-SLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLK  341 (430)
T ss_pred             ceeEEEecCCc-cEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEE
Confidence            99999998866 466778899999999999999999885   23569999999999998765 58899999999999998


Q ss_pred             EEeCC
Q 024372          223 GYNMP  227 (268)
Q Consensus       223 ~~~~~  227 (268)
                      .|...
T Consensus       342 ~YtGA  346 (430)
T KOG0640|consen  342 EYTGA  346 (430)
T ss_pred             EEecC
Confidence            88643

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=5.1e-31  Score=218.00  Aligned_cols=248  Identities=25%  Similarity=0.351  Sum_probs=206.5

Q ss_pred             eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCC
Q 024372           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT   92 (268)
Q Consensus        13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~   92 (268)
                      +...++|.+++|+|..|.. ..++  ..-.+++|+..+...++++.-.+..|+++.|-.||.++|.|...|.|+++|..+
T Consensus        23 ~ke~~~vssl~fsp~~P~d-~aVt--~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~   99 (487)
T KOG0310|consen   23 HKEHNSVSSLCFSPKHPYD-FAVT--SSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS   99 (487)
T ss_pred             ccccCcceeEecCCCCCCc-eEEe--cccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc
Confidence            3455689999999988864 2333  334678899888877777877889999999999999999999999999999666


Q ss_pred             CCeeeee-ccCCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeE
Q 024372           93 GDEKHSF-EHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (268)
Q Consensus        93 ~~~~~~~-~~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i  170 (268)
                      ...++.+ .|+.++..+.|+| ++..+++|++|+.+++||+.+... ...+..|.+.|.|.+++|..++++++|+.||+|
T Consensus       100 r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~v  178 (487)
T KOG0310|consen  100 RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKV  178 (487)
T ss_pred             HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE-EEEecCCcceeEeeccccCCCeEEEecCCCceE
Confidence            4444444 5999999999999 556788899999999999987654 446778999999999999999999999999999


Q ss_pred             EEEeCCCC-ceEEeecCCCCEEEEEECCCCcEEEEeCCCeEEEEeCCCcee-eeEE-eCCCCceeeEEcCCCCCEEEecc
Q 024372          171 RLWDARSG-KIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGL-VKGY-NMPCNTESASLEPKLGNIFIAGG  247 (268)
Q Consensus       171 ~iwd~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~gs  247 (268)
                      |+||+|+. ..+.++++..+|.++.+-|.|..++++.+..|++||+-.++. +... +++....++.+.. +++.|++||
T Consensus       179 rl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s-~~~rLlS~s  257 (487)
T KOG0310|consen  179 RLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLAS-DSTRLLSGS  257 (487)
T ss_pred             EEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeec-CCceEeecc
Confidence            99999987 778899999999999999999999999999999999986543 3322 3455566777776 589999999


Q ss_pred             CCCeEEEEECCCCcEEee
Q 024372          248 EDMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       248 ~d~~i~~wd~~~g~~~~~  265 (268)
                      -|+.|++||+.+-+.+..
T Consensus       258 LD~~VKVfd~t~~Kvv~s  275 (487)
T KOG0310|consen  258 LDRHVKVFDTTNYKVVHS  275 (487)
T ss_pred             cccceEEEEccceEEEEe
Confidence            999999999877777654

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.98  E-value=2.3e-30  Score=208.35  Aligned_cols=245  Identities=20%  Similarity=0.354  Sum_probs=195.7

Q ss_pred             cEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecC-C--CcEEEEeeCCCcE
Q 024372            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDA-N--ALFSASGSADFTA   85 (268)
Q Consensus         9 ~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~-~--~~~l~s~s~D~~v   85 (268)
                      |+-+..|.+=|.++.-.     +..+++|+.||++++||. .|+.+.++.||.++|.++++.- +  ...++++|.|.++
T Consensus        98 pl~~~~hdDWVSsv~~~-----~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl  171 (423)
T KOG0313|consen   98 PLQCFLHDDWVSSVKGA-----SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTL  171 (423)
T ss_pred             ccccccchhhhhhhccc-----CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceE
Confidence            34445688888777553     468999999999999995 6899999999999999888742 2  2458999999999


Q ss_pred             EEEeCCCCCeeee-----eccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCC------------------------CC
Q 024372           86 KLWDALTGDEKHS-----FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRP------------------------DA  136 (268)
Q Consensus        86 ~iw~~~~~~~~~~-----~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~------------------------~~  136 (268)
                      ++|..+.+.....     -.|+..|.+++..+++..+++|++|.++++|+.+..                        +.
T Consensus       172 ~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~  251 (423)
T KOG0313|consen  172 RLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRT  251 (423)
T ss_pred             EEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccC
Confidence            9999876654222     258899999999999999999999999999993210                        11


Q ss_pred             CCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEe-CCCeEEEEeC
Q 024372          137 PPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-DGSSVKFWDA  215 (268)
Q Consensus       137 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~  215 (268)
                      +.....+|.++|..+.|++.  ..+.+++.|.+|+.||+.++.++.++......+++..+|..++|+++ +|+.+|+||.
T Consensus       252 P~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DP  329 (423)
T KOG0313|consen  252 PLVTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDP  329 (423)
T ss_pred             ceEEecccccceeeEEEcCC--CceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCC
Confidence            22345678899999999873  34556678899999999999999999888889999999999998875 6899999999


Q ss_pred             CCc--ee-eeEEeCCCC-ceeeEEcCCCCCEEEeccCCCeEEEEECCCCc
Q 024372          216 NHF--GL-VKGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDFHTGE  261 (268)
Q Consensus       216 ~~~--~~-~~~~~~~~~-~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~  261 (268)
                      |+.  .. ...|..+.+ +.++.++|..-.+|++||.|+++++||+++-.
T Consensus       330 R~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k  379 (423)
T KOG0313|consen  330 RTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK  379 (423)
T ss_pred             CCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence            875  22 244444555 45666777777889999999999999998655

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=1e-30  Score=216.25  Aligned_cols=237  Identities=19%  Similarity=0.307  Sum_probs=197.0

Q ss_pred             cCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCC-cEEEEeeCCCcEEEEeCCCC
Q 024372           15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA-LFSASGSADFTAKLWDALTG   93 (268)
Q Consensus        15 h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~-~~l~s~s~D~~v~iw~~~~~   93 (268)
                      -...|.++.|.   .||.+||+|...|.|+|+|..+...++.+.+|+.+|..+.|+|++ ..+++|+.|+.+++||+.+.
T Consensus        67 Fk~~v~s~~fR---~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a  143 (487)
T KOG0310|consen   67 FKDVVYSVDFR---SDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA  143 (487)
T ss_pred             hccceeEEEee---cCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc
Confidence            45678899998   499999999999999999966655677899999999999999865 67789999999999999988


Q ss_pred             Ceeeee-ccCCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEE
Q 024372           94 DEKHSF-EHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR  171 (268)
Q Consensus        94 ~~~~~~-~~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~  171 (268)
                      .....+ .|++.|+|.+|+| ++.+++||++||+||+||++.......+ .+|..+|..+.+.|+++.+ ++++. +.+|
T Consensus       144 ~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~e-lnhg~pVe~vl~lpsgs~i-asAgG-n~vk  220 (487)
T KOG0310|consen  144 YVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVE-LNHGCPVESVLALPSGSLI-ASAGG-NSVK  220 (487)
T ss_pred             EEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEE-ecCCCceeeEEEcCCCCEE-EEcCC-CeEE
Confidence            864444 4999999999999 5679999999999999999865433333 4678899999999987654 45444 7999


Q ss_pred             EEeCCCCceEE-ee-cCCCCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccC
Q 024372          172 LWDARSGKIVQ-TL-ETKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE  248 (268)
Q Consensus       172 iwd~~~~~~~~-~~-~~~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~  248 (268)
                      +||+-+|..+- .+ +|+..|.|+.+..++..|.++ =|+.|++||+.+++.+..+.++.++.+++.+| +++.+++|-.
T Consensus       221 VWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~-dd~t~viGms  299 (487)
T KOG0310|consen  221 VWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSP-DDQTVVIGMS  299 (487)
T ss_pred             EEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecccceeeEEecC-CCceEEEecc
Confidence            99998765543 33 366779999999998777665 59999999999999999999999999999998 6888999999


Q ss_pred             CCeEEEEECC
Q 024372          249 DMWVHVFDFH  258 (268)
Q Consensus       249 d~~i~~wd~~  258 (268)
                      ||.+.+=+..
T Consensus       300 nGlv~~rr~~  309 (487)
T KOG0310|consen  300 NGLVSIRRRE  309 (487)
T ss_pred             cceeeeehhh
Confidence            9977655443

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=8.8e-30  Score=200.70  Aligned_cols=243  Identities=15%  Similarity=0.206  Sum_probs=200.2

Q ss_pred             cEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCc--EEEEeeCCCcEE
Q 024372            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANAL--FSASGSADFTAK   86 (268)
Q Consensus         9 ~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~--~l~s~s~D~~v~   86 (268)
                      .+.++.|.++|++++-     +|.++|+||.|.+|+|||..+...++.+-.|.+.|.++.|.+...  .|.+|+.||.|.
T Consensus        36 lF~~~aH~~sitavAV-----s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~  110 (362)
T KOG0294|consen   36 LFAFSAHAGSITALAV-----SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHII  110 (362)
T ss_pred             cccccccccceeEEEe-----cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEE
Confidence            4455799999999988     578999999999999999999999999999999999999987764  899999999999


Q ss_pred             EEeCCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEee
Q 024372           87 LWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT  165 (268)
Q Consensus        87 iw~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  165 (268)
                      +|+...-.+...+. |...|+.++.+|.+++-++.+.|+.+++||+-.++........+  .-+.+.|+|++.++++.+ 
T Consensus       111 iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~--~at~v~w~~~Gd~F~v~~-  187 (362)
T KOG0294|consen  111 IWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN--KATLVSWSPQGDHFVVSG-  187 (362)
T ss_pred             EEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC--cceeeEEcCCCCEEEEEe-
Confidence            99999888877774 88889999999999999999999999999986654322222222  334489999998776664 


Q ss_pred             CCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEeCCCCce-eeE-EcCCCCCEE
Q 024372          166 DSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTE-SAS-LEPKLGNIF  243 (268)
Q Consensus       166 ~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~  243 (268)
                      . +.|-||.+.+...+..+.....+.++.|-..+.++++++++.|++||.....+...+..+.+.. .+. +..+.+.+|
T Consensus       188 ~-~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~l  266 (362)
T KOG0294|consen  188 R-NKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYL  266 (362)
T ss_pred             c-cEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEE
Confidence            3 6899999999888877766666888888888888888899999999998877777676655433 333 334468999


Q ss_pred             EeccCCCeEEEEECCCC
Q 024372          244 IAGGEDMWVHVFDFHTG  260 (268)
Q Consensus       244 ~~gs~d~~i~~wd~~~g  260 (268)
                      +++|.||.|++||+...
T Consensus       267 vTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  267 VTASSDGFIKVWDIDME  283 (362)
T ss_pred             EEeccCceEEEEEcccc
Confidence            99999999999998754

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=7.8e-30  Score=196.35  Aligned_cols=247  Identities=22%  Similarity=0.317  Sum_probs=204.8

Q ss_pred             eeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEE--eeCccCcEEEEEecCC-CcEEEEeeCCCcEEEE
Q 024372           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGT--FEGHKGAVWSCCLDAN-ALFSASGSADFTAKLW   88 (268)
Q Consensus        12 ~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~--~~~h~~~V~~~~~~~~-~~~l~s~s~D~~v~iw   88 (268)
                      +.+|...|.+++|+.   +|..|++|+.|+++++|+++..++...  .++|.+.|-.++|+|. ...+++++.|++|++|
T Consensus        16 ~~~~~~~v~Sv~wn~---~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w   92 (313)
T KOG1407|consen   16 LQGHVQKVHSVAWNC---DGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW   92 (313)
T ss_pred             hhhhhhcceEEEEcc---cCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence            358999999999995   899999999999999999988866544  4689999999999865 4788999999999999


Q ss_pred             eCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCC
Q 024372           89 DALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG  168 (268)
Q Consensus        89 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~  168 (268)
                      |...+++......+..-.-+.|+|+++.++.++.|..|...|.++.+....+  ...-.+..++|+.++..++++.+- |
T Consensus        93 d~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~--~~~~e~ne~~w~~~nd~Fflt~Gl-G  169 (313)
T KOG1407|consen   93 DIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEE--QFKFEVNEISWNNSNDLFFLTNGL-G  169 (313)
T ss_pred             EeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehh--cccceeeeeeecCCCCEEEEecCC-c
Confidence            9999999998887666566889999999999999999999998765433222  223457778888666666766544 8


Q ss_pred             eEEEEeCCCCceEEeecCC-CCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeCCC-CceeeEEcCCCCCEEEe
Q 024372          169 GVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPC-NTESASLEPKLGNIFIA  245 (268)
Q Consensus       169 ~i~iwd~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  245 (268)
                      .|.|......+.++.++.| ....|+.|+|+|+++++| .|-.+.+||++..-+++.+.... ++..+.|+. +|+||++
T Consensus       170 ~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~-dg~~lAS  248 (313)
T KOG1407|consen  170 CVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSH-DGRMLAS  248 (313)
T ss_pred             eEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEecc-Ccceeec
Confidence            9999999999999988854 568899999999999875 68899999998877777775433 456777777 6999999


Q ss_pred             ccCCCeEEEEECCCCcEEee
Q 024372          246 GGEDMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       246 gs~d~~i~~wd~~~g~~~~~  265 (268)
                      ||+|..|-+=++++|+.+..
T Consensus       249 aSEDh~IDIA~vetGd~~~e  268 (313)
T KOG1407|consen  249 ASEDHFIDIAEVETGDRVWE  268 (313)
T ss_pred             cCccceEEeEecccCCeEEE
Confidence            99999999999999998764

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=1.5e-29  Score=203.66  Aligned_cols=244  Identities=22%  Similarity=0.340  Sum_probs=188.4

Q ss_pred             ecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeE----EEeeCccCcEEEEEecCCCcEEEEeeCCC
Q 024372            8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWI----GTFEGHKGAVWSCCLDANALFSASGSADF   83 (268)
Q Consensus         8 ~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~----~~~~~h~~~V~~~~~~~~~~~l~s~s~D~   83 (268)
                      .-+.+.||+++|.+++|.-..+....+++|+.|.++++|..+.++..    ..-+||+..|-+++..+++..++|||+|.
T Consensus       136 ~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~  215 (423)
T KOG0313|consen  136 SIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDT  215 (423)
T ss_pred             eEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccc
Confidence            34556799999999998654444557999999999999988877643    33459999999999999999999999999


Q ss_pred             cEEEEeCCCCC-------------------------eeeee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCC
Q 024372           84 TAKLWDALTGD-------------------------EKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP  137 (268)
Q Consensus        84 ~v~iw~~~~~~-------------------------~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~  137 (268)
                      +++||+..+..                         +..++ .|.++|..|.|++ ...++++++|.+|+.||+.++...
T Consensus       216 ~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~  294 (423)
T KOG0313|consen  216 MLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLK  294 (423)
T ss_pred             eeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccce
Confidence            99999932110                         11122 4889999999998 568899999999999999987655


Q ss_pred             CeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCc--e-EEeec-CCCCEEEEEECCCCcEE--EEeCCCeEE
Q 024372          138 PREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK--I-VQTLE-TKSPVTSAEVSRDGRYI--TTADGSSVK  211 (268)
Q Consensus       138 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~--~-~~~~~-~~~~v~~~~~s~~g~~l--~~~~~~~v~  211 (268)
                      .....  ....+++.+.+.. .++++|+.|..||+||.|++.  . .++|. |++.|.++.++|...|.  .++.|++++
T Consensus       295 ~~~~~--~ksl~~i~~~~~~-~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~k  371 (423)
T KOG0313|consen  295 STLTT--NKSLNCISYSPLS-KLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVK  371 (423)
T ss_pred             eeeec--CcceeEeeccccc-ceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEE
Confidence            44443  3478999998854 577777788999999999864  3 34444 55679999999987654  345799999


Q ss_pred             EEeCCCce-eeeEEeCCCC-ceeeEEcCCCCCEEEeccCCCeEEEEEC
Q 024372          212 FWDANHFG-LVKGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDF  257 (268)
Q Consensus       212 ~wd~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~gs~d~~i~~wd~  257 (268)
                      +||+|... ++..+..+.. ..++.+.  .+..+++||.|.+|+++.-
T Consensus       372 lWDvRS~k~plydI~~h~DKvl~vdW~--~~~~IvSGGaD~~l~i~~~  417 (423)
T KOG0313|consen  372 LWDVRSTKAPLYDIAGHNDKVLSVDWN--EGGLIVSGGADNKLRIFKG  417 (423)
T ss_pred             EEEeccCCCcceeeccCCceEEEEecc--CCceEEeccCcceEEEecc
Confidence            99999865 6666655533 3344443  5889999999999999864

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=7.7e-31  Score=207.80  Aligned_cols=244  Identities=24%  Similarity=0.362  Sum_probs=204.0

Q ss_pred             ecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEe--------eCccCcEEEEEecCCCcEEEEeeCCCcE
Q 024372           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF--------EGHKGAVWSCCLDANALFSASGSADFTA   85 (268)
Q Consensus        14 ~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~--------~~h~~~V~~~~~~~~~~~l~s~s~D~~v   85 (268)
                      |..+-+-+..|+|   ||+||++||.||-|.+|+..+|++.+.+        .-|.++|.+++|+.|..++|||+.||.|
T Consensus       211 g~KSh~EcA~FSP---DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkI  287 (508)
T KOG0275|consen  211 GQKSHVECARFSP---DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKI  287 (508)
T ss_pred             ccccchhheeeCC---CCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcE
Confidence            4555666888984   9999999999999999999999765443        4578999999999999999999999999


Q ss_pred             EEEeCCCCCeeeeec--cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEE
Q 024372           86 KLWDALTGDEKHSFE--HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS  163 (268)
Q Consensus        86 ~iw~~~~~~~~~~~~--~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  163 (268)
                      ++|.+.++++++.|.  |...|.++.|+.|+..+.++++|.++|+--+.+++. ..++.+|...|+...|.+++.+++ +
T Consensus       288 KvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~-LKEfrGHsSyvn~a~ft~dG~~ii-s  365 (508)
T KOG0275|consen  288 KVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKC-LKEFRGHSSYVNEATFTDDGHHII-S  365 (508)
T ss_pred             EEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchh-HHHhcCccccccceEEcCCCCeEE-E
Confidence            999999999999886  888999999999999999999999999998887754 456667888999999988776655 5


Q ss_pred             eeCCCeEEEEeCCCCceEEeecC---CCCEEEEEECCCC--cEEEEeCCCeEEEEeCCCceeeeEEeCC----CCceeeE
Q 024372          164 CTDSGGVRLWDARSGKIVQTLET---KSPVTSAEVSRDG--RYITTADGSSVKFWDANHFGLVKGYNMP----CNTESAS  234 (268)
Q Consensus       164 ~~~d~~i~iwd~~~~~~~~~~~~---~~~v~~~~~s~~g--~~l~~~~~~~v~~wd~~~~~~~~~~~~~----~~~~~~~  234 (268)
                      ++.||+|++|+..+.+|+.+|+.   ..+|+++..-|-.  .++++-...+|.+-++.. ..++.+...    .....++
T Consensus       366 aSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG-QvVrsfsSGkREgGdFi~~~  444 (508)
T KOG0275|consen  366 ASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG-QVVRSFSSGKREGGDFINAI  444 (508)
T ss_pred             ecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc-eEEeeeccCCccCCceEEEE
Confidence            56679999999999999999874   3468888887754  577787788999998864 567777542    2355666


Q ss_pred             EcCCCCCEEEeccCCCeEEEEECCCCcEEe
Q 024372          235 LEPKLGNIFIAGGEDMWVHVFDFHTGEQIA  264 (268)
Q Consensus       235 ~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~  264 (268)
                      .+| -|+++++.++|+.+|.+.+.+|+.-.
T Consensus       445 lSp-kGewiYcigED~vlYCF~~~sG~LE~  473 (508)
T KOG0275|consen  445 LSP-KGEWIYCIGEDGVLYCFSVLSGKLER  473 (508)
T ss_pred             ecC-CCcEEEEEccCcEEEEEEeecCceee
Confidence            777 59999999999999999999887633

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=1.1e-28  Score=217.73  Aligned_cols=223  Identities=16%  Similarity=0.282  Sum_probs=170.9

Q ss_pred             EEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCC-CcEEEEeeCCCcEEEEeCCCCCe--------eee-eccCCeE
Q 024372           36 SASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN-ALFSASGSADFTAKLWDALTGDE--------KHS-FEHKHIV  105 (268)
Q Consensus        36 s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~-~~~l~s~s~D~~v~iw~~~~~~~--------~~~-~~~~~~v  105 (268)
                      .|+.++.+++|+......+..+.+|.+.|.+++|+|+ +.+|+||+.|++|++||+.++..        ... ..|...|
T Consensus        49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V  128 (568)
T PTZ00420         49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI  128 (568)
T ss_pred             CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence            3667888999998777788899999999999999997 68999999999999999975421        122 2478899


Q ss_pred             EEEEECCCCCE-EEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEee
Q 024372          106 RACAFSEDTHL-LLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL  184 (268)
Q Consensus       106 ~~v~~~~~~~~-l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~  184 (268)
                      .+++|+|++.. +++++.|+.|++||++++... .... +...+.+++|++++.. +++++.|+.|+|||+++++.+.++
T Consensus       129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~-~~i~-~~~~V~SlswspdG~l-Lat~s~D~~IrIwD~Rsg~~i~tl  205 (568)
T PTZ00420        129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRA-FQIN-MPKKLSSLKWNIKGNL-LSGTCVGKHMHIIDPRKQEIASSF  205 (568)
T ss_pred             EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEE-EEEe-cCCcEEEEEECCCCCE-EEEEecCCEEEEEECCCCcEEEEE
Confidence            99999998865 578999999999999876432 2232 4567999999987764 555567799999999999998888


Q ss_pred             cCCC-CEE-----EEEECCCCcEEEE-eCC----CeEEEEeCCC-ceeeeEEeCCCC--ceeeEEcCCCCCEEEeccCCC
Q 024372          185 ETKS-PVT-----SAEVSRDGRYITT-ADG----SSVKFWDANH-FGLVKGYNMPCN--TESASLEPKLGNIFIAGGEDM  250 (268)
Q Consensus       185 ~~~~-~v~-----~~~~s~~g~~l~~-~~~----~~v~~wd~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~gs~d~  250 (268)
                      ..|. .+.     ...|++++.++++ +.+    +.|++||+++ .+++....+...  .....+.++++.+|++|+.|+
T Consensus       206 ~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~  285 (568)
T PTZ00420        206 HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDG  285 (568)
T ss_pred             ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCC
Confidence            7543 222     2335688877665 544    4799999986 456665554332  333345566789999999999


Q ss_pred             eEEEEECCCCc
Q 024372          251 WVHVFDFHTGE  261 (268)
Q Consensus       251 ~i~~wd~~~g~  261 (268)
                      .||+|++..+.
T Consensus       286 tIr~~e~~~~~  296 (568)
T PTZ00420        286 NCRYYQHSLGS  296 (568)
T ss_pred             eEEEEEccCCc
Confidence            99999997764

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.97  E-value=9.2e-30  Score=223.70  Aligned_cols=239  Identities=25%  Similarity=0.394  Sum_probs=201.6

Q ss_pred             cCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEE-eeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCC
Q 024372           15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGT-FEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG   93 (268)
Q Consensus        15 h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~-~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~   93 (268)
                      |...+.+..|+    + .++++++.|.++++|+..++..+.. +.||++.|+++++..-+.++++|+.|.++|+||+.++
T Consensus       207 ~~~~~~~~q~~----~-~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg  281 (537)
T KOG0274|consen  207 DDHVVLCLQLH----D-GFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG  281 (537)
T ss_pred             Ccchhhhheee----c-CeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC
Confidence            56677788786    3 4899999999999999999998888 9999999999999887788999999999999999999


Q ss_pred             Ceeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEE
Q 024372           94 DEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRL  172 (268)
Q Consensus        94 ~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~i  172 (268)
                      ++...+. |.+.+.++...  ...+++|+.|.++++|+++.+.. ......|.++|.++...   ..++.+|+.|++|++
T Consensus       282 ~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~-l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~V  355 (537)
T KOG0274|consen  282 ECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGAC-LNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKV  355 (537)
T ss_pred             cEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcce-EEEeccccccEEEEEec---CCEEEEEecCceEEE
Confidence            9999987 88889888654  44778899999999999987653 34454589999999875   346667778899999


Q ss_pred             EeCCCCceEEeecCC-CCEEEEEECCCCcEEEEeCCCeEEEEeCCCc-eeeeEEeCCCCceeeEEcCCCCCEEEeccCCC
Q 024372          173 WDARSGKIVQTLETK-SPVTSAEVSRDGRYITTADGSSVKFWDANHF-GLVKGYNMPCNTESASLEPKLGNIFIAGGEDM  250 (268)
Q Consensus       173 wd~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~  250 (268)
                      ||++++++++++.+| ..|.++.+.+....+.++-|++|++||+++. +++.++..+....... .. .+.++++++.|+
T Consensus       356 W~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l-~~-~~~~Lvs~~aD~  433 (537)
T KOG0274|consen  356 WDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSL-LL-RDNFLVSSSADG  433 (537)
T ss_pred             EEhhhceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCccccccc-cc-ccceeEeccccc
Confidence            999999999999865 5699998888755556677899999999998 8999998876654222 22 488999999999


Q ss_pred             eEEEEECCCCcEEeec
Q 024372          251 WVHVFDFHTGEQIAIT  266 (268)
Q Consensus       251 ~i~~wd~~~g~~~~~~  266 (268)
                      .|++||..+++.+.++
T Consensus       434 ~Ik~WD~~~~~~~~~~  449 (537)
T KOG0274|consen  434 TIKLWDAEEGECLRTL  449 (537)
T ss_pred             cEEEeecccCceeeee
Confidence            9999999999988775

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=4.6e-31  Score=202.11  Aligned_cols=243  Identities=18%  Similarity=0.281  Sum_probs=200.9

Q ss_pred             EeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeC
Q 024372           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA   90 (268)
Q Consensus        11 ~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~   90 (268)
                      .|.||.+.|++...+.   +....|++++|.+.++||.-+|..+.+|. |+..|.+|+|+.|..+|+||+.++.+|++|+
T Consensus        54 tfeghkgavw~~~l~~---na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdl  129 (334)
T KOG0278|consen   54 TFEGHKGAVWSATLNK---NATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDL  129 (334)
T ss_pred             eeeccCcceeeeecCc---hhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhc
Confidence            4689999999988873   56688999999999999999999888886 9999999999999999999999999999999


Q ss_pred             CCCCe--eeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCC
Q 024372           91 LTGDE--KHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG  168 (268)
Q Consensus        91 ~~~~~--~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~  168 (268)
                      +..+-  ...-.|+..|+.+-|....+++++...|+++|+||.+++.......  ...+++++.+++++. +++.. +.+
T Consensus       130 n~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~--~~s~VtSlEvs~dG~-ilTia-~gs  205 (334)
T KOG0278|consen  130 NRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE--FNSPVTSLEVSQDGR-ILTIA-YGS  205 (334)
T ss_pred             cCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe--cCCCCcceeeccCCC-EEEEe-cCc
Confidence            76542  2233588899999998888889999999999999998875443333  345788888888775 44443 447


Q ss_pred             eEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEe-CC-CCceeeEEcCCCCCEEEe
Q 024372          169 GVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYN-MP-CNTESASLEPKLGNIFIA  245 (268)
Q Consensus       169 ~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~  245 (268)
                      .|++||..+...++.++....|.+..++|+..++++ ++|..++-||..+++.+-.|+ .+ ..+-++.++| +|...++
T Consensus       206 sV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSP-dGE~yAs  284 (334)
T KOG0278|consen  206 SVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSP-DGELYAS  284 (334)
T ss_pred             eeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECC-CCceeec
Confidence            999999999999999998889999999999766655 578999999999988877763 33 3445667777 7999999


Q ss_pred             ccCCCeEEEEECCCCcE
Q 024372          246 GGEDMWVHVFDFHTGEQ  262 (268)
Q Consensus       246 gs~d~~i~~wd~~~g~~  262 (268)
                      ||+||+|++|-+..++.
T Consensus       285 GSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  285 GSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             cCCCceEEEEEecCCCc
Confidence            99999999998865553

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=1.8e-31  Score=213.60  Aligned_cols=255  Identities=20%  Similarity=0.283  Sum_probs=208.8

Q ss_pred             cceeeecEEe--eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEee
Q 024372            3 KRKVAVPLVC--HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS   80 (268)
Q Consensus         3 ~~~~~~~~~~--~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s   80 (268)
                      .|++++|++.  .||.++|.+++-+|..+  ..+|+|+.||.|+|||..+.+++.+|.+|.+.|..+++..  ..++|+|
T Consensus        51 eR~fakPFv~~L~gHrdGV~~lakhp~~l--s~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvg  126 (433)
T KOG0268|consen   51 ERVFAKPFVGSLDGHRDGVSCLAKHPNKL--STVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVG  126 (433)
T ss_pred             HHHhhccchhhccccccccchhhcCcchh--hhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEec
Confidence            3678888876  59999999999998543  4799999999999999999999999999999999999987  4568999


Q ss_pred             CCCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcE
Q 024372           81 ADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTI  160 (268)
Q Consensus        81 ~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  160 (268)
                      .|++|+.|.++. ++.+++.....+..+.-+..+..++|++.  .|.+||..... +.+.+....+.+.++.|+|-...+
T Consensus       127 dDKtvK~wk~~~-~p~~tilg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~-Pv~smswG~Dti~svkfNpvETsI  202 (433)
T KOG0268|consen  127 DDKTVKQWKIDG-PPLHTILGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDN-PVSSMSWGADSISSVKFNPVETSI  202 (433)
T ss_pred             CCcceeeeeccC-CcceeeeccccccccccccccccccccCc--eeeecccccCC-ccceeecCCCceeEEecCCCcchh
Confidence            999999999865 56677766667777877777888998874  68999986543 445555556789999999988889


Q ss_pred             EEEeeCCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCc-EEEEeCCCeEEEEeCCCc-eeeeEEeCCC-CceeeEEcC
Q 024372          161 LSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGR-YITTADGSSVKFWDANHF-GLVKGYNMPC-NTESASLEP  237 (268)
Q Consensus       161 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~~~v~~wd~~~~-~~~~~~~~~~-~~~~~~~~~  237 (268)
                      +++|..|+.|.|+|+|++.+++.+-.....+.|+|+|.+- |+++.+|..+..+|++.. +++..|.-+. ....++++|
T Consensus       203 Las~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsp  282 (433)
T KOG0268|consen  203 LASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSP  282 (433)
T ss_pred             eeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCC
Confidence            9999888999999999999999887777789999999764 344557889999999875 3444454332 345667777


Q ss_pred             CCCCEEEeccCCCeEEEEECCCCcEEeec
Q 024372          238 KLGNIFIAGGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       238 ~~~~~~~~gs~d~~i~~wd~~~g~~~~~~  266 (268)
                       .|+-|++||.|..|++|.+..|.-..+|
T Consensus       283 -tG~EfvsgsyDksIRIf~~~~~~SRdiY  310 (433)
T KOG0268|consen  283 -TGQEFVSGSYDKSIRIFPVNHGHSRDIY  310 (433)
T ss_pred             -CcchhccccccceEEEeecCCCcchhhh
Confidence             7999999999999999999877766553

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=1e-28  Score=217.94  Aligned_cols=227  Identities=17%  Similarity=0.219  Sum_probs=169.1

Q ss_pred             cEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC--------eEEEeeCccCcEEEEEecCCCcE-EEEe
Q 024372            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD--------WIGTFEGHKGAVWSCCLDANALF-SASG   79 (268)
Q Consensus         9 ~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~--------~~~~~~~h~~~V~~~~~~~~~~~-l~s~   79 (268)
                      ...+.+|.++|.+++|+|.  ++++||+|+.|++|++|++.++.        .+..+.+|...|.+++|+|++.. ++|+
T Consensus        67 v~~L~gH~~~V~~lafsP~--~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSg  144 (568)
T PTZ00420         67 VIKLKGHTSSILDLQFNPC--FSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSS  144 (568)
T ss_pred             EEEEcCCCCCEEEEEEcCC--CCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEE
Confidence            3456799999999999972  37899999999999999987642        34578899999999999998865 5799


Q ss_pred             eCCCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEE-----EEe
Q 024372           80 SADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTV-----AWL  154 (268)
Q Consensus        80 s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~-----~~~  154 (268)
                      +.|++|++||+.++.....+.+...|.+++|+|+|.+|++++.|+.|++||++++... ..+..|.+.+...     .++
T Consensus       145 S~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i-~tl~gH~g~~~s~~v~~~~fs  223 (568)
T PTZ00420        145 GFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIA-SSFHIHDGGKNTKNIWIDGLG  223 (568)
T ss_pred             eCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEE-EEEecccCCceeEEEEeeeEc
Confidence            9999999999999988777778888999999999999999999999999999876543 4455566654332     233


Q ss_pred             CCCCcEEEEeeCC---CeEEEEeCCC-CceEEeecCCC--C-EEEEEECCCCcEEEEe-CCCeEEEEeCCCcee--eeEE
Q 024372          155 HSDQTILSSCTDS---GGVRLWDARS-GKIVQTLETKS--P-VTSAEVSRDGRYITTA-DGSSVKFWDANHFGL--VKGY  224 (268)
Q Consensus       155 ~~~~~~~~~~~~d---~~i~iwd~~~-~~~~~~~~~~~--~-v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~--~~~~  224 (268)
                      +++..++++|.++   ++|+|||++. ++++..+....  . +......++|.+++++ .|+.|++|++.....  +..|
T Consensus       224 ~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~  303 (568)
T PTZ00420        224 GDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEY  303 (568)
T ss_pred             CCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeeccc
Confidence            6666667666553   4899999995 56676655432  2 2233335567776654 789999999976432  2333


Q ss_pred             eCCCCceeeEEcCC
Q 024372          225 NMPCNTESASLEPK  238 (268)
Q Consensus       225 ~~~~~~~~~~~~~~  238 (268)
                      ........+++.|.
T Consensus       304 ~s~~p~~g~~f~Pk  317 (568)
T PTZ00420        304 KSCSPFRSFGFLPK  317 (568)
T ss_pred             ccCCCccceEEccc
Confidence            33333445666653

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=7.5e-30  Score=223.99  Aligned_cols=240  Identities=20%  Similarity=0.297  Sum_probs=191.6

Q ss_pred             eeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCC
Q 024372           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL   91 (268)
Q Consensus        12 ~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~   91 (268)
                      |..|.+||++++|+|   .+-++++|+.|.+|+||+..+.+++.+|.||-+-|+++.|++.-..++|+|.|.+||||+..
T Consensus        47 FdeHdGpVRgv~FH~---~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwq  123 (1202)
T KOG0292|consen   47 FDEHDGPVRGVDFHP---TQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQ  123 (1202)
T ss_pred             hhccCCccceeeecC---CCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEecc
Confidence            468999999999997   55599999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCC---CCC-------------------------CCeEec
Q 024372           92 TGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNR---PDA-------------------------PPREVG  142 (268)
Q Consensus        92 ~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~---~~~-------------------------~~~~~~  142 (268)
                      +++++..+. |.+.|.|.+|+|....++++|-|.+||+||+..   ...                         ......
T Consensus       124 sr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLE  203 (1202)
T KOG0292|consen  124 SRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLE  203 (1202)
T ss_pred             CCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeec
Confidence            999988875 999999999999888999999999999999731   000                         001123


Q ss_pred             CCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCce--EEeec-CCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCc
Q 024372          143 NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI--VQTLE-TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHF  218 (268)
Q Consensus       143 ~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~--~~~~~-~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~  218 (268)
                      +|.-.|+.++|.|.-+ ++++|+||+.|++|-....+.  +-+.. |...|.++.|+|...++.+ |+|+.||+||+...
T Consensus       204 GHDRGVNwaAfhpTlp-liVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR  282 (1202)
T KOG0292|consen  204 GHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR  282 (1202)
T ss_pred             ccccccceEEecCCcc-eEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc
Confidence            4566788888877554 677888999999998764443  22333 4567999999999887765 68999999999998


Q ss_pred             eeeeEEeC-CCCceeeEEcCCCCCEEEeccCCCeEEEEEC
Q 024372          219 GLVKGYNM-PCNTESASLEPKLGNIFIAGGEDMWVHVFDF  257 (268)
Q Consensus       219 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~  257 (268)
                      ..+++|.. +...+.++.+| ...+|++|=..| +.||..
T Consensus       283 t~v~tfrrendRFW~laahP-~lNLfAAgHDsG-m~VFkl  320 (1202)
T KOG0292|consen  283 TSVQTFRRENDRFWILAAHP-ELNLFAAGHDSG-MIVFKL  320 (1202)
T ss_pred             cceeeeeccCCeEEEEEecC-CcceeeeecCCc-eEEEEE
Confidence            88888865 33456666666 366555543333 445544

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=1.6e-30  Score=211.20  Aligned_cols=248  Identities=20%  Similarity=0.277  Sum_probs=206.1

Q ss_pred             EEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC--eEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEE
Q 024372           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKL   87 (268)
Q Consensus        10 ~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~--~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~i   87 (268)
                      ..++.|.+.|..+.|-+   +...|++|+.|..|++|++...+  ++.+|.|-.+.|..+.|.+++.++.+++.|+.+++
T Consensus       169 ~~ld~h~gev~~v~~l~---~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~  245 (459)
T KOG0288|consen  169 FVLDAHEGEVHDVEFLR---NSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRL  245 (459)
T ss_pred             hhhhccccccceeEEcc---CcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceee
Confidence            34578999999999985   44589999999999999887665  78899999999999999999999999999999999


Q ss_pred             EeCCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeC
Q 024372           88 WDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTD  166 (268)
Q Consensus        88 w~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  166 (268)
                      |++.......++. |++.|.++.|......+++|+.|.+|+.||+.........+.  ...+..|.-.   ...+++|-.
T Consensus       246 Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~--~S~cnDI~~~---~~~~~SgH~  320 (459)
T KOG0288|consen  246 WNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP--GSQCNDIVCS---ISDVISGHF  320 (459)
T ss_pred             eeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc--cccccceEec---ceeeeeccc
Confidence            9999988877775 999999999988776699999999999999976443322222  1223333322   345667777


Q ss_pred             CCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEE-EeCCCeEEEEeCCCceeeeEEeCC-----CCceeeEEcCCCC
Q 024372          167 SGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYIT-TADGSSVKFWDANHFGLVKGYNMP-----CNTESASLEPKLG  240 (268)
Q Consensus       167 d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~~~~~~v~~wd~~~~~~~~~~~~~-----~~~~~~~~~~~~~  240 (268)
                      |++||+||.|+..+....+.++.+.++..+++|.-+. ++.|.++.+.|+++++....|...     +.....+|+| ++
T Consensus       321 DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSp-d~  399 (459)
T KOG0288|consen  321 DKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSP-DG  399 (459)
T ss_pred             ccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECC-CC
Confidence            8999999999999999999989999999999997765 567899999999999888877653     3455677777 79


Q ss_pred             CEEEeccCCCeEEEEECCCCcEEeec
Q 024372          241 NIFIAGGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       241 ~~~~~gs~d~~i~~wd~~~g~~~~~~  266 (268)
                      +|+++||.||.|++|++.+|+...++
T Consensus       400 ~YvaAGS~dgsv~iW~v~tgKlE~~l  425 (459)
T KOG0288|consen  400 SYVAAGSADGSVYIWSVFTGKLEKVL  425 (459)
T ss_pred             ceeeeccCCCcEEEEEccCceEEEEe
Confidence            99999999999999999999877664

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.2e-28  Score=210.17  Aligned_cols=240  Identities=20%  Similarity=0.306  Sum_probs=206.8

Q ss_pred             eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeC-ccCcEEEEEecCCCcEEEEeeCCCcEEEEeCC
Q 024372           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG-HKGAVWSCCLDANALFSASGSADFTAKLWDAL   91 (268)
Q Consensus        13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~-h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~   91 (268)
                      .-+++.|+++.|++   +|++||.|..+|++.|||..+.+.+.++.+ |.+.|-+++|.  +..+.+|+.|+.|..+|+.
T Consensus       214 ~~~~~~vtSv~ws~---~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR  288 (484)
T KOG0305|consen  214 SFGEELVTSVKWSP---DGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVR  288 (484)
T ss_pred             ecCCCceEEEEECC---CCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEe
Confidence            34588999999985   999999999999999999999999999998 99999999998  5677899999999999998


Q ss_pred             CCCeeee-e-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEe--eCC
Q 024372           92 TGDEKHS-F-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC--TDS  167 (268)
Q Consensus        92 ~~~~~~~-~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~d  167 (268)
                      ..+.... + .|...|-.+.|+++++.+|+|+.|+.+.+||.... .+...+..|.+.|..++|+|-...+||+|  +.|
T Consensus       289 ~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~-~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D  367 (484)
T KOG0305|consen  289 ISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP-EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSAD  367 (484)
T ss_pred             cchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCc-cccEEEeccceeeeEeeeCCCccCceEEcCCCcc
Confidence            7765443 3 38889999999999999999999999999998544 34566678899999999999988888875  567


Q ss_pred             CeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEe---CCCeEEEEeCCCceeeeEEeCCCC-ceeeEEcCCCCCEE
Q 024372          168 GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA---DGSSVKFWDANHFGLVKGYNMPCN-TESASLEPKLGNIF  243 (268)
Q Consensus       168 ~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~---~~~~v~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  243 (268)
                      +.|++||+.+++.+..+.....|.++.|++..+-++++   .+..|.||+.-..+.+..+..+.. +..++++| +|+.+
T Consensus       368 ~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SP-dg~~i  446 (484)
T KOG0305|consen  368 RCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSP-DGETI  446 (484)
T ss_pred             cEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECC-CCCEE
Confidence            89999999999999999988999999999998766554   357899999988888777776654 44556666 79999


Q ss_pred             EeccCCCeEEEEECCC
Q 024372          244 IAGGEDMWVHVFDFHT  259 (268)
Q Consensus       244 ~~gs~d~~i~~wd~~~  259 (268)
                      ++|+.|.++++|++-.
T Consensus       447 ~t~a~DETlrfw~~f~  462 (484)
T KOG0305|consen  447 VTGAADETLRFWNLFD  462 (484)
T ss_pred             EEecccCcEEeccccC
Confidence            9999999999999864

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.97  E-value=7.9e-29  Score=202.53  Aligned_cols=243  Identities=17%  Similarity=0.240  Sum_probs=201.5

Q ss_pred             EEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEe
Q 024372           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (268)
Q Consensus        10 ~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~   89 (268)
                      ..+.||+..|+.+.|+|   +...+++++.|..|+||.+-........+.|.++|..+..+|.+.||++++.|++.-+.|
T Consensus       255 ~~~~Gh~kki~~v~~~~---~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd  331 (506)
T KOG0289|consen  255 ATLKGHTKKITSVKFHK---DLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSD  331 (506)
T ss_pred             hhccCcceEEEEEEecc---chhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEE
Confidence            34569999999999996   666899999999999999877777777889999999999999999999999999999999


Q ss_pred             CCCCCeeeeeccCC---eEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeC
Q 024372           90 ALTGDEKHSFEHKH---IVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTD  166 (268)
Q Consensus        90 ~~~~~~~~~~~~~~---~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  166 (268)
                      +.++.+.....+..   .+++.+|||||.+|.+|..|+.+++||+.++. ....+..|.++|..++|+.+|. .+++..+
T Consensus       332 ~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~-~~a~Fpght~~vk~i~FsENGY-~Lat~ad  409 (506)
T KOG0289|consen  332 ISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT-NVAKFPGHTGPVKAISFSENGY-WLATAAD  409 (506)
T ss_pred             ccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcc-ccccCCCCCCceeEEEeccCce-EEEEEec
Confidence            99999888777642   47899999999999999999999999997765 4456677999999999976654 5566677


Q ss_pred             CCeEEEEeCCCCceEEeecCC--CCEEEEEECCCCcEEEEe-CCCeEEEEeC--CCceeeeEEeCCCCceeeEEcCCCCC
Q 024372          167 SGGVRLWDARSGKIVQTLETK--SPVTSAEVSRDGRYITTA-DGSSVKFWDA--NHFGLVKGYNMPCNTESASLEPKLGN  241 (268)
Q Consensus       167 d~~i~iwd~~~~~~~~~~~~~--~~v~~~~~s~~g~~l~~~-~~~~v~~wd~--~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (268)
                      |+.|++||+|+-+.++++...  .+++++.|.+.|.+++.+ .+=.|++++.  ..+.+++.+.-+.+......+....+
T Consensus       410 d~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq  489 (506)
T KOG0289|consen  410 DGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQ  489 (506)
T ss_pred             CCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccce
Confidence            789999999999988887643  369999999999998765 4445556653  35677777776665555555655688


Q ss_pred             EEEeccCCCeEEEEEC
Q 024372          242 IFIAGGEDMWVHVFDF  257 (268)
Q Consensus       242 ~~~~gs~d~~i~~wd~  257 (268)
                      +++++|.|...+++.+
T Consensus       490 ~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  490 YLASTSMDAILRLYAL  505 (506)
T ss_pred             EEeeccchhheEEeec
Confidence            9999999999888753

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.97  E-value=5.7e-28  Score=201.69  Aligned_cols=251  Identities=20%  Similarity=0.304  Sum_probs=183.6

Q ss_pred             eeeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC--eEEEeeCccCcEEEEEecCCCcEE------
Q 024372            5 KVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDANALFS------   76 (268)
Q Consensus         5 ~~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~--~~~~~~~h~~~V~~~~~~~~~~~l------   76 (268)
                      ..+...++..|..+++-..|+|   .|.|+|+|-..|++||||....+  +..+|+--.++|..++|+.+++++      
T Consensus        48 ~~~~~~iYtEH~~~vtVAkySP---sG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEG  124 (603)
T KOG0318|consen   48 NPASVDIYTEHAHQVTVAKYSP---SGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEG  124 (603)
T ss_pred             CccceeeeccccceeEEEEeCC---CceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecC
Confidence            3444555668999999999996   79999999999999999865422  223333334455555555555444      


Q ss_pred             ---------------------------------------EEeeCCCcEEEEeCCCCCeeeee-ccCCeEEEEEECCCCCE
Q 024372           77 ---------------------------------------ASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHL  116 (268)
Q Consensus        77 ---------------------------------------~s~s~D~~v~iw~~~~~~~~~~~-~~~~~v~~v~~~~~~~~  116 (268)
                                                             +|||.|++|.+|+=-..+-..++ .|..+|+++.|+|||..
T Consensus       125 rerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~  204 (603)
T KOG0318|consen  125 RERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSR  204 (603)
T ss_pred             ccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCe
Confidence                                                   44444444444432211112222 37789999999999999


Q ss_pred             EEEeeCCCeEEEEECCCCCCCCeEec---CCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCCC----
Q 024372          117 LLTGGFEKILRIFDLNRPDAPPREVG---NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSP----  189 (268)
Q Consensus       117 l~s~~~d~~i~~~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~----  189 (268)
                      +++++.|+++.+||-.+++. .-++.   .|++.|..++|+|++..+++ ++.|.++||||+.+.++++++.....    
T Consensus       205 Fat~gsDgki~iyDGktge~-vg~l~~~~aHkGsIfalsWsPDs~~~~T-~SaDkt~KIWdVs~~slv~t~~~~~~v~dq  282 (603)
T KOG0318|consen  205 FATAGSDGKIYIYDGKTGEK-VGELEDSDAHKGSIFALSWSPDSTQFLT-VSADKTIKIWDVSTNSLVSTWPMGSTVEDQ  282 (603)
T ss_pred             EEEecCCccEEEEcCCCccE-EEEecCCCCccccEEEEEECCCCceEEE-ecCCceEEEEEeeccceEEEeecCCchhce
Confidence            99999999999999766553 23333   78999999999998877665 45679999999999999999875433    


Q ss_pred             EEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEeCCCC-ceeeEEcCCCCCEEEeccCCCeEEEEECCCCcE
Q 024372          190 VTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ  262 (268)
Q Consensus       190 v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~  262 (268)
                      -..+.|. .+.++..+-+|.|.+++......++.+..+.. +.++..++ ++++|++|+.||.|--||..+|..
T Consensus       283 qvG~lWq-kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~-d~~~i~SgsyDG~I~~W~~~~g~~  354 (603)
T KOG0318|consen  283 QVGCLWQ-KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP-DGKTIYSGSYDGHINSWDSGSGTS  354 (603)
T ss_pred             EEEEEEe-CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC-CCCEEEeeccCceEEEEecCCccc
Confidence            2344555 66677778889999999998888887776554 55666666 689999999999999999876654

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=2.1e-29  Score=204.70  Aligned_cols=242  Identities=23%  Similarity=0.292  Sum_probs=204.1

Q ss_pred             eeeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCc
Q 024372            5 KVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFT   84 (268)
Q Consensus         5 ~~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~   84 (268)
                      |++..-.|.|-.++|++++|.+   ++.++++++.|+++++|++..+++..+|.||++.|.++.|.......++|+.|.+
T Consensus       208 k~~~~~tLaGs~g~it~~d~d~---~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRt  284 (459)
T KOG0288|consen  208 KSELISTLAGSLGNITSIDFDS---DNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRT  284 (459)
T ss_pred             hhhhhhhhhccCCCcceeeecC---CCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccch
Confidence            3444556678888999999984   8899999999999999999999999999999999999999887777899999999


Q ss_pred             EEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEe
Q 024372           85 AKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC  164 (268)
Q Consensus        85 v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  164 (268)
                      +|+||+....+..++-..+.+..+..+  ...+++|.+|++||.||.+++... .... -.+.|+++..++++-.+++ +
T Consensus       285 iK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~-~sv~-~gg~vtSl~ls~~g~~lLs-s  359 (459)
T KOG0288|consen  285 IKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKT-RSVP-LGGRVTSLDLSMDGLELLS-S  359 (459)
T ss_pred             hhhhhhhhhheeccccccccccceEec--ceeeeecccccceEEEeccCCcee-eEee-cCcceeeEeeccCCeEEee-e
Confidence            999999998888888777778877776  557899999999999999876533 3332 3458999998887766555 4


Q ss_pred             eCCCeEEEEeCCCCceEEeecC-----CCCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeCCC---CceeeEE
Q 024372          165 TDSGGVRLWDARSGKIVQTLET-----KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPC---NTESASL  235 (268)
Q Consensus       165 ~~d~~i~iwd~~~~~~~~~~~~-----~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~~---~~~~~~~  235 (268)
                      +.|.++++.|+|+.+..+.+..     ...++.+.|||++.|+++| .|+.|+||++.++++.+....+.   .+.++.|
T Consensus       360 sRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W  439 (459)
T KOG0288|consen  360 SRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSW  439 (459)
T ss_pred             cCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEE
Confidence            7779999999999998887753     3458899999999999865 68999999999998887776532   3667788


Q ss_pred             cCCCCCEEEeccCCCeEEEE
Q 024372          236 EPKLGNIFIAGGEDMWVHVF  255 (268)
Q Consensus       236 ~~~~~~~~~~gs~d~~i~~w  255 (268)
                      .+ .|+.+++++.++.+.+|
T Consensus       440 ~~-sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  440 NP-SGSGLLSADKQKAVTLW  458 (459)
T ss_pred             cC-CCchhhcccCCcceEec
Confidence            87 79999999999999999

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.97  E-value=2.7e-30  Score=213.46  Aligned_cols=210  Identities=21%  Similarity=0.366  Sum_probs=171.0

Q ss_pred             CeEEEeeCccCcEEEEEecC-CCcEEEEeeCCCcEEEEeCCC-CCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEE
Q 024372           52 DWIGTFEGHKGAVWSCCLDA-NALFSASGSADFTAKLWDALT-GDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRI  128 (268)
Q Consensus        52 ~~~~~~~~h~~~V~~~~~~~-~~~~l~s~s~D~~v~iw~~~~-~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~  128 (268)
                      +.+.++.||+..|.++.|.| .+.+|+|++.|+.|+||++.. +.+++++. |..+|+.++|++++..+.++++|+.+++
T Consensus       205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl  284 (503)
T KOG0282|consen  205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL  284 (503)
T ss_pred             hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence            45788999999999999998 678889999999999999987 77888875 8899999999999999999999999999


Q ss_pred             EECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCC-CCEEEEEECCCCcEEE-EeC
Q 024372          129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYIT-TAD  206 (268)
Q Consensus       129 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~-~~~  206 (268)
                      ||++++....+..  ....++|+.|.|++++++++|..|+.|+.||+|+++.++.+..+ +.++.+.|-++|+.++ +++
T Consensus       285 wDtETG~~~~~f~--~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSD  362 (503)
T KOG0282|consen  285 WDTETGQVLSRFH--LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSD  362 (503)
T ss_pred             eccccceEEEEEe--cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeecc
Confidence            9999886544333  34467899999999898888888999999999999999988754 6799999999997765 567


Q ss_pred             CCeEEEEeCCCceeeeE--------------------------------EeC-----------------CCCceeeEEcC
Q 024372          207 GSSVKFWDANHFGLVKG--------------------------------YNM-----------------PCNTESASLEP  237 (268)
Q Consensus       207 ~~~v~~wd~~~~~~~~~--------------------------------~~~-----------------~~~~~~~~~~~  237 (268)
                      ++.+++|+.+....++.                                |..                 +.-.+.+.++|
T Consensus       363 dks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSp  442 (503)
T KOG0282|consen  363 DKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSP  442 (503)
T ss_pred             CccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcC
Confidence            89999999863322110                                000                 00112345566


Q ss_pred             CCCCEEEeccCCCeEEEEECCCCcEEe
Q 024372          238 KLGNIFIAGGEDMWVHVFDFHTGEQIA  264 (268)
Q Consensus       238 ~~~~~~~~gs~d~~i~~wd~~~g~~~~  264 (268)
                       +|++|++|..||.+.+||.++-+++.
T Consensus       443 -DG~~l~SGdsdG~v~~wdwkt~kl~~  468 (503)
T KOG0282|consen  443 -DGRTLCSGDSDGKVNFWDWKTTKLVS  468 (503)
T ss_pred             -CCCeEEeecCCccEEEeechhhhhhh
Confidence             79999999999999999998766543

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.97  E-value=1.6e-27  Score=191.15  Aligned_cols=248  Identities=17%  Similarity=0.168  Sum_probs=199.1

Q ss_pred             eecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEE
Q 024372            7 AVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAK   86 (268)
Q Consensus         7 ~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~   86 (268)
                      +.+..+.||...|+++.|+   -||.+||||..+|.++||...++.....+-.--+.+.=+.|+|...+|+.|+.||.+-
T Consensus        97 e~~~eltgHKDSVt~~~Fs---hdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvW  173 (399)
T KOG0296|consen   97 EFAGELTGHKDSVTCCSFS---HDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVW  173 (399)
T ss_pred             cceeEecCCCCceEEEEEc---cCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEE
Confidence            4566778999999999998   4999999999999999999999988877765555666688999999999999999999


Q ss_pred             EEeCCC-CCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecC---------------------C
Q 024372           87 LWDALT-GDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN---------------------S  144 (268)
Q Consensus        87 iw~~~~-~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~---------------------~  144 (268)
                      +|.+.. +.+.....|..++++-.|.|+|+.++++..|++|++||+.++.........                     .
T Consensus       174 mw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~  253 (399)
T KOG0296|consen  174 MWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNS  253 (399)
T ss_pred             EEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccC
Confidence            999987 444445568999999999999999999999999999998765422211100                     0


Q ss_pred             ----------cc-------------------cEEEEEEeCCCC--cEEEEeeCCCeEEEEeCCCCceEEeecCCCCEEEE
Q 024372          145 ----------SG-------------------SIRTVAWLHSDQ--TILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSA  193 (268)
Q Consensus       145 ----------~~-------------------~v~~~~~~~~~~--~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~  193 (268)
                                .+                   .+.++.+.|...  .+++.|+-||+|.|||+.+.+..+..++..+|..+
T Consensus       254 e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l  333 (399)
T KOG0296|consen  254 EGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKL  333 (399)
T ss_pred             CccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEE
Confidence                      00                   011222222111  35777788899999999998888888888889999


Q ss_pred             EECCCCcEEEEeCCCeEEEEeCCCceeeeEEeCCCC-ceeeEEcCCCCCEEEeccCCCeEEEEECC
Q 024372          194 EVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (268)
Q Consensus       194 ~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gs~d~~i~~wd~~  258 (268)
                      .|-++..++++..++.||.||.|++.++.+|..+.. +..+++.| +.++++++|.|...+||++.
T Consensus       334 ~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  334 KWLNTDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSP-QKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             EEcCcchheeeccCceEEeeeccccceEEEEecCchheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence            999955556667899999999999999999988764 55667777 69999999999999999874

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.2e-28  Score=193.41  Aligned_cols=250  Identities=20%  Similarity=0.337  Sum_probs=199.1

Q ss_pred             cEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEE
Q 024372            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLW   88 (268)
Q Consensus         9 ~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw   88 (268)
                      ...+.||.+.|+.++-...   ...+.++|.|.+.+||.+++|+++.++.||.+.|.++.|++.+.+++++|.|++.-||
T Consensus       141 vre~~GHkDGiW~Vaa~~t---qpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW  217 (481)
T KOG0300|consen  141 VRELEGHKDGIWHVAADST---QPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIW  217 (481)
T ss_pred             hhhhcccccceeeehhhcC---CcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHH
Confidence            3445799999999987653   3489999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCC----CC------------------------------------eeeee-ccCCeEEEEEECCCCCEEEEeeCCCeEE
Q 024372           89 DALT----GD------------------------------------EKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILR  127 (268)
Q Consensus        89 ~~~~----~~------------------------------------~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~  127 (268)
                      ...-    .+                                    ++..+ .|...|.++.|-..++.++++++|++..
T Consensus       218 ~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAn  297 (481)
T KOG0300|consen  218 KAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTAN  297 (481)
T ss_pred             HHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccce
Confidence            8310    00                                    01111 2566777888888899999999999999


Q ss_pred             EEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCC-ceEEeecCC-CCEEEEEECCCCcEEEEe
Q 024372          128 IFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG-KIVQTLETK-SPVTSAEVSRDGRYITTA  205 (268)
Q Consensus       128 ~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~-~~~~~~~~~-~~v~~~~~s~~g~~l~~~  205 (268)
                      +||+++++. .+...+|..+.+.++-. +.+.++++++.|-+.|+||.|.. ..+..|++| ..|.++.|..+.+.+.++
T Consensus       298 lwDVEtge~-v~~LtGHd~ELtHcstH-ptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgS  375 (481)
T KOG0300|consen  298 LWDVETGEV-VNILTGHDSELTHCSTH-PTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGS  375 (481)
T ss_pred             eeeeccCce-eccccCcchhccccccC-CcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecC
Confidence            999998764 45556677777776654 45667888889999999999843 235567765 459999999999999999


Q ss_pred             CCCeEEEEeCCCc-eeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEee
Q 024372          206 DGSSVKFWDANHF-GLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       206 ~~~~v~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~  265 (268)
                      +|++|++||+++. .++.++...+....+..+. .+..++.--.++.|++||+ +|+.++.
T Consensus       376 DDrTvKvWdLrNMRsplATIRtdS~~NRvavs~-g~~iIAiPhDNRqvRlfDl-nG~RlaR  434 (481)
T KOG0300|consen  376 DDRTVKVWDLRNMRSPLATIRTDSPANRVAVSK-GHPIIAIPHDNRQVRLFDL-NGNRLAR  434 (481)
T ss_pred             CCceEEEeeeccccCcceeeecCCccceeEeec-CCceEEeccCCceEEEEec-CCCcccc
Confidence            9999999999986 4567777766666666665 3557777788999999998 4665554

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.3e-28  Score=198.88  Aligned_cols=246  Identities=19%  Similarity=0.282  Sum_probs=195.0

Q ss_pred             eeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEee-CccCcEEEEEecCCCcEEEEeeCCCc
Q 024372            6 VAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE-GHKGAVWSCCLDANALFSASGSADFT   84 (268)
Q Consensus         6 ~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~s~s~D~~   84 (268)
                      +.--..+.||..+|.-+.|+|   |-+||++++.|..+++||+.+|++...+. +|...+.+|+|-||+..+++|+.|++
T Consensus       259 ~kl~~tlvgh~~~V~yi~wSP---DdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~  335 (519)
T KOG0293|consen  259 FKLKKTLVGHSQPVSYIMWSP---DDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRT  335 (519)
T ss_pred             eeeeeeeecccCceEEEEECC---CCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCc
Confidence            333445679999999999996   77899999999999999999999887775 45678999999999999999999999


Q ss_pred             EEEEeCCCCCeeeeec--cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEE
Q 024372           85 AKLWDALTGDEKHSFE--HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILS  162 (268)
Q Consensus        85 v~iw~~~~~~~~~~~~--~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  162 (268)
                      +..||+..+. ...++  ....|.+++..+||+.+++.+.|..|++|+.++..  -........++++++.+.++. ++.
T Consensus       336 i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~--dr~lise~~~its~~iS~d~k-~~L  411 (519)
T KOG0293|consen  336 IIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARV--DRGLISEEQPITSFSISKDGK-LAL  411 (519)
T ss_pred             EEEecCCcch-hhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhh--hhccccccCceeEEEEcCCCc-EEE
Confidence            9999986543 33332  12358899999999999999999999999976432  121223345899999877665 555


Q ss_pred             EeeCCCeEEEEeCCCCceEEeecCCC---CEEEEEECC-CCcEEEEe-CCCeEEEEeCCCceeeeEEeCCCC-ceeeEEc
Q 024372          163 SCTDSGGVRLWDARSGKIVQTLETKS---PVTSAEVSR-DGRYITTA-DGSSVKFWDANHFGLVKGYNMPCN-TESASLE  236 (268)
Q Consensus       163 ~~~~d~~i~iwd~~~~~~~~~~~~~~---~v~~~~~s~-~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~~~-~~~~~~~  236 (268)
                      ..-.+.++++||++....++.+.++.   .+..-+|-. +.+|+++| +|+.|+||+.++++++.....+.. +..+++.
T Consensus       412 vnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswN  491 (519)
T KOG0293|consen  412 VNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWN  491 (519)
T ss_pred             EEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecC
Confidence            55667999999999777777776542   244555554 45788775 689999999999999999988765 4567788


Q ss_pred             CCCCCEEEeccCCCeEEEEECC
Q 024372          237 PKLGNIFIAGGEDMWVHVFDFH  258 (268)
Q Consensus       237 ~~~~~~~~~gs~d~~i~~wd~~  258 (268)
                      |.+.++||+||.|++||+|-..
T Consensus       492 P~~p~m~ASasDDgtIRIWg~~  513 (519)
T KOG0293|consen  492 PADPEMFASASDDGTIRIWGPS  513 (519)
T ss_pred             CCCHHHhhccCCCCeEEEecCC
Confidence            8889999999999999999754

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=6.9e-29  Score=190.48  Aligned_cols=213  Identities=22%  Similarity=0.375  Sum_probs=182.6

Q ss_pred             CCcceeeecEEe-eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCC-cEEEE
Q 024372            1 MDKRKVAVPLVC-HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA-LFSAS   78 (268)
Q Consensus         1 ~~~~~~~~~~~~-~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~-~~l~s   78 (268)
                      ||+.+-++|+.. ..|..+|.++.|++.  .++.++++|.|++|++|+..-+.-+.+|.||...|+...|+|.. ..+++
T Consensus        88 ~d~~~~s~Pi~~~kEH~~EV~Svdwn~~--~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas  165 (311)
T KOG0277|consen   88 FDLTMPSKPIHKFKEHKREVYSVDWNTV--RRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFAS  165 (311)
T ss_pred             eccCCCCcchhHHHhhhhheEEeccccc--cceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEE
Confidence            577777888766 479999999999984  67888999999999999999999999999999999999999864 68899


Q ss_pred             eeCCCcEEEEeCCCCCeeeeec-cCCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCC
Q 024372           79 GSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHS  156 (268)
Q Consensus        79 ~s~D~~v~iw~~~~~~~~~~~~-~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~  156 (268)
                      +|.|+++++||+........++ |...+.++.|+. +.++|+||+-|+.||.||++.-+.+..++..|.-.|..+.|+|.
T Consensus       166 ~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph  245 (311)
T KOG0277|consen  166 ASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPH  245 (311)
T ss_pred             ccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcc
Confidence            9999999999997655544454 777999999988 78899999999999999998877777888889999999999999


Q ss_pred             CCcEEEEeeCCCeEEEEeCCCC-ceEEeecCCCC-EEEEEECCC-CcEEE-EeCCCeEEEEeC
Q 024372          157 DQTILSSCTDSGGVRLWDARSG-KIVQTLETKSP-VTSAEVSRD-GRYIT-TADGSSVKFWDA  215 (268)
Q Consensus       157 ~~~~~~~~~~d~~i~iwd~~~~-~~~~~~~~~~~-v~~~~~s~~-g~~l~-~~~~~~v~~wd~  215 (268)
                      ...++++++.|=++||||...+ .++.+..+|.+ +..+.|++- +.+++ ++-|+.+.+|+-
T Consensus       246 ~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  246 HASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             hhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence            9899999999999999999754 45667776655 788999875 44555 466999999983

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=1.7e-27  Score=186.90  Aligned_cols=233  Identities=21%  Similarity=0.304  Sum_probs=169.5

Q ss_pred             ecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC-CCeEE-EeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCC
Q 024372           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-GDWIG-TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL   91 (268)
Q Consensus        14 ~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~-~~~~~-~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~   91 (268)
                      .-++.|.+|+|+|.  ...+++++|.|++||+|+++. |.++. ....|.++|++++|+.+|..+++|+.|+.+++||+.
T Consensus        25 pP~DsIS~l~FSP~--~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~  102 (347)
T KOG0647|consen   25 PPEDSISALAFSPQ--ADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLA  102 (347)
T ss_pred             CcccchheeEeccc--cCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEcc
Confidence            45778999999993  456888999999999999987 45443 234689999999999999999999999999999999


Q ss_pred             CCCeeeeeccCCeEEEEEECCCC--CEEEEeeCCCeEEEEECCCCCCCCeEecC--------------------------
Q 024372           92 TGDEKHSFEHKHIVRACAFSEDT--HLLLTGGFEKILRIFDLNRPDAPPREVGN--------------------------  143 (268)
Q Consensus        92 ~~~~~~~~~~~~~v~~v~~~~~~--~~l~s~~~d~~i~~~d~~~~~~~~~~~~~--------------------------  143 (268)
                      +++......|..+|+++.|-+..  .+|+||++|+++|.||++...........                          
T Consensus       103 S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vyn  182 (347)
T KOG0647|consen  103 SGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYN  182 (347)
T ss_pred             CCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEE
Confidence            99988888899999999986644  49999999999999998754321111000                          


Q ss_pred             --------------CcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEE--eecCC----------CCEEEEEECC
Q 024372          144 --------------SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQ--TLETK----------SPVTSAEVSR  197 (268)
Q Consensus       144 --------------~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~--~~~~~----------~~v~~~~~s~  197 (268)
                                    .+--+.|++.+++.+.+++++-+ |.+-|-.+..+....  +|+.|          ..|++++|+|
T Consensus       183 L~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiE-Grv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP  261 (347)
T KOG0647|consen  183 LENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIE-GRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHP  261 (347)
T ss_pred             cCCCcchhhhhcCcccceeeEEEEEecCCceEeeeec-ceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeec
Confidence                          01124566656555555554443 777776665542211  12111          2478999999


Q ss_pred             C-CcEEEEeCCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEec-cCC
Q 024372          198 D-GRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAG-GED  249 (268)
Q Consensus       198 ~-g~~l~~~~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-s~d  249 (268)
                      . |.++..|+||+..+||.+....++++.....++.++-+..+|++|+.+ |.|
T Consensus       262 ~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYD  315 (347)
T KOG0647|consen  262 VHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYD  315 (347)
T ss_pred             ccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeecc
Confidence            7 556667899999999998877788776544444444444479999865 556

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=4.5e-28  Score=206.72  Aligned_cols=243  Identities=23%  Similarity=0.360  Sum_probs=196.8

Q ss_pred             ecCCCee---eEEEecCCCCCcEEEEEeCCCCeEEeeCCC--CC----eEEEeeCccCcEEEEEecCCCcEEEEeeCCCc
Q 024372           14 GHSRPVV---DLFYSPITPDGFFLVSASKDSSPMLRNGET--GD----WIGTFEGHKGAVWSCCLDANALFSASGSADFT   84 (268)
Q Consensus        14 ~h~~~v~---~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~--~~----~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~   84 (268)
                      .|...|.   ++..++  |.++||++|++||.|++|+...  ++    ++.+++.|.+.|..+....++..+.|+|.|-+
T Consensus        19 qn~~~v~~~~~Lq~da--~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtT   96 (735)
T KOG0308|consen   19 QNRNGVNITKALQLDA--PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTT   96 (735)
T ss_pred             hccccccchhhccccC--CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCce
Confidence            4666666   565554  7888999999999999997754  22    57888999999999999889988999999999


Q ss_pred             EEEEeCCCCC--eeeee-ccCCeEEEEEE-CCCCCEEEEeeCCCeEEEEECCCCCC---------CCeEec-CCcccEEE
Q 024372           85 AKLWDALTGD--EKHSF-EHKHIVRACAF-SEDTHLLLTGGFEKILRIFDLNRPDA---------PPREVG-NSSGSIRT  150 (268)
Q Consensus        85 v~iw~~~~~~--~~~~~-~~~~~v~~v~~-~~~~~~l~s~~~d~~i~~~d~~~~~~---------~~~~~~-~~~~~v~~  150 (268)
                      |++|+.....  +..++ .|.+.|.|+++ -++..++|+|+.|+.|++||++++..         ...... ++..++++
T Consensus        97 VK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYS  176 (735)
T KOG0308|consen   97 VKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYS  176 (735)
T ss_pred             EEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceee
Confidence            9999998764  44444 49999999999 78889999999999999999986521         111122 56778999


Q ss_pred             EEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCC-CCEEEEEECCCCcEEE-EeCCCeEEEEeCCCceeeeEEeCCC
Q 024372          151 VAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYIT-TADGSSVKFWDANHFGLVKGYNMPC  228 (268)
Q Consensus       151 ~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~-~~~~~~v~~wd~~~~~~~~~~~~~~  228 (268)
                      ++.++.+ .++++|+-.+-|++||.++++.+-.+.+| ..|..+-+++||+.++ +++|++||+||++..+++.+|..+.
T Consensus       177 LA~N~t~-t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~  255 (735)
T KOG0308|consen  177 LAMNQTG-TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHK  255 (735)
T ss_pred             eecCCcc-eEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEecc
Confidence            9977655 56777777799999999999887777655 4599999999997765 5689999999999999999998765


Q ss_pred             C-ceeeEEcCCCCCEEEeccCCCeEEEEECCCC
Q 024372          229 N-TESASLEPKLGNIFIAGGEDMWVHVFDFHTG  260 (268)
Q Consensus       229 ~-~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g  260 (268)
                      . ..+....+ +=+.+++|+.|+.|+.=|+++.
T Consensus       256 e~VWaL~~~~-sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  256 EGVWALQSSP-SFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             CceEEEeeCC-CcceEEecCCCCcEEecccCCc
Confidence            4 45555554 5678999999999999988773

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.96  E-value=3.4e-27  Score=193.05  Aligned_cols=235  Identities=21%  Similarity=0.302  Sum_probs=198.0

Q ss_pred             CCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCee
Q 024372           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEK   96 (268)
Q Consensus        17 ~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~   96 (268)
                      ..++++...|.   ...+++|+.|+++.++|..+++.+.+|.||.-.|..+.++++....++++.|..|++|........
T Consensus       220 pgi~ald~~~s---~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~  296 (506)
T KOG0289|consen  220 PGITALDIIPS---SSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEP  296 (506)
T ss_pred             CCeeEEeecCC---CCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCc
Confidence            46777777653   357899999999999999999999999999999999999999999999999999999998665544


Q ss_pred             e-eeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEec-CCcccEEEEEEeCCCCcEEEEeeCCCeEEEEe
Q 024372           97 H-SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG-NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD  174 (268)
Q Consensus        97 ~-~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd  174 (268)
                      . ...|..+|+.+..+|.+.+|++++.|+++-..|++++........ ...-.+++.+|.| ++.++.+|..|+.|+|||
T Consensus       297 ~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwd  375 (506)
T KOG0289|consen  297 TSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWD  375 (506)
T ss_pred             cccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEE
Confidence            4 335899999999999999999999999999999987764433322 2334578888765 567899999999999999


Q ss_pred             CCCCceEEeecC-CCCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeCCCC--ceeeEEcCCCCCEEEeccCCC
Q 024372          175 ARSGKIVQTLET-KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCN--TESASLEPKLGNIFIAGGEDM  250 (268)
Q Consensus       175 ~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~gs~d~  250 (268)
                      +.++..+..|.. .++|..++|+.+|-+++++ +|+.|++||+|+.+..++|..+..  ..+.++.. .|.+++++|.|-
T Consensus       376 lks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~-SGt~L~~~g~~l  454 (506)
T KOG0289|consen  376 LKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQ-SGTYLGIAGSDL  454 (506)
T ss_pred             cCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcC-CCCeEEeeccee
Confidence            999999988875 4679999999999998875 567799999999999999988664  66777776 799999999997


Q ss_pred             eEEEEE
Q 024372          251 WVHVFD  256 (268)
Q Consensus       251 ~i~~wd  256 (268)
                      .||+++
T Consensus       455 ~Vy~~~  460 (506)
T KOG0289|consen  455 QVYICK  460 (506)
T ss_pred             EEEEEe
Confidence            777776

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.9e-27  Score=180.83  Aligned_cols=236  Identities=19%  Similarity=0.307  Sum_probs=184.3

Q ss_pred             EeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeC
Q 024372           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA   90 (268)
Q Consensus        11 ~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~   90 (268)
                      ...||-.+|.+++-+   .|...+++|+.|+.+.+||+++|+.++.|++|.++|.+++|..+...++|||.|.++|+||+
T Consensus        54 tYsghG~EVlD~~~s---~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDC  130 (307)
T KOG0316|consen   54 TYSGHGHEVLDAALS---SDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDC  130 (307)
T ss_pred             eecCCCceeeecccc---ccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEc
Confidence            346899999998876   47789999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCC--eeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCC
Q 024372           91 LTGD--EKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS  167 (268)
Q Consensus        91 ~~~~--~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d  167 (268)
                      ....  +++.+. ..+.|.++..+  +..+++|+.||++|.||++.+....-.+   ..+|+++.+++++...++++ -|
T Consensus       131 RS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~---g~pit~vs~s~d~nc~La~~-l~  204 (307)
T KOG0316|consen  131 RSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYF---GHPITSVSFSKDGNCSLASS-LD  204 (307)
T ss_pred             ccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhc---CCcceeEEecCCCCEEEEee-cc
Confidence            7643  444443 45677777765  4578999999999999998765433333   34899999999887666655 56


Q ss_pred             CeEEEEeCCCCceEEeecCCCC---EEEEEECCCCcEE-EEeCCCeEEEEeCCCceeeeEEeCCCCc--eeeEEcCCCCC
Q 024372          168 GGVRLWDARSGKIVQTLETKSP---VTSAEVSRDGRYI-TTADGSSVKFWDANHFGLVKGYNMPCNT--ESASLEPKLGN  241 (268)
Q Consensus       168 ~~i~iwd~~~~~~~~~~~~~~~---v~~~~~s~~g~~l-~~~~~~~v~~wd~~~~~~~~~~~~~~~~--~~~~~~~~~~~  241 (268)
                      +++++.|-.+|+.++.+.++..   -..++++.....+ .+++|+.|.+||+.....+..+..+..+  ..+.+.|...+
T Consensus       205 stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~  284 (307)
T KOG0316|consen  205 STLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDD  284 (307)
T ss_pred             ceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccc
Confidence            9999999999999988875432   2344555544444 4568999999999998888888776654  46667776566


Q ss_pred             EEEeccCCCeEEEEEC
Q 024372          242 IFIAGGEDMWVHVFDF  257 (268)
Q Consensus       242 ~~~~gs~d~~i~~wd~  257 (268)
                      ++++++.-  ++.|.-
T Consensus       285 f~~A~~~~--~~~~~~  298 (307)
T KOG0316|consen  285 FITATGHG--DLFWYQ  298 (307)
T ss_pred             eeEecCCc--eeceee
Confidence            55554433  556653

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.96  E-value=2.3e-27  Score=203.64  Aligned_cols=233  Identities=24%  Similarity=0.368  Sum_probs=188.0

Q ss_pred             EeeecCCCeee-EEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEe
Q 024372           11 VCHGHSRPVVD-LFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (268)
Q Consensus        11 ~~~~h~~~v~~-~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~   89 (268)
                      .+.+|.+.|.. ++|.+ + ++-.|+.|+.|.++.+|.....+.+++|++|+..|.+++...++. ++|||+|.++++|.
T Consensus        52 ~~~~~~g~i~~~i~y~e-~-~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~  128 (745)
T KOG0301|consen   52 AFEGPKGFIANSICYAE-S-DKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWR  128 (745)
T ss_pred             ecccCcceeeccceecc-c-cCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEec
Confidence            35678888876 88876 3 555789999999999999999999999999999999998877777 88999999999998


Q ss_pred             CCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCe
Q 024372           90 ALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG  169 (268)
Q Consensus        90 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~  169 (268)
                      ....... ...|+..|.++..-|.. .++||+.|++||+|.-   ....+.+..|.+.|..++..++..  +++|+.||.
T Consensus       129 ~~~l~~~-l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~---~~~l~tf~gHtD~VRgL~vl~~~~--flScsNDg~  201 (745)
T KOG0301|consen  129 IGELVYS-LQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG---GTLLKTFSGHTDCVRGLAVLDDSH--FLSCSNDGS  201 (745)
T ss_pred             chhhhcc-cCCcchheeeeeecCCC-cEEeccCcceeeeccC---CchhhhhccchhheeeeEEecCCC--eEeecCCce
Confidence            7432222 33599999999988877 7889999999999974   345667778999999999987653  446777899


Q ss_pred             EEEEeCCCCceEEeecC-CCCEEEEEE-CCCCcEEEEeCCCeEEEEeCCCceeeeEEeCCC-CceeeEEcCCCCCEEEec
Q 024372          170 VRLWDARSGKIVQTLET-KSPVTSAEV-SRDGRYITTADGSSVKFWDANHFGLVKGYNMPC-NTESASLEPKLGNIFIAG  246 (268)
Q Consensus       170 i~iwd~~~~~~~~~~~~-~~~v~~~~~-s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g  246 (268)
                      |++||+ +|+++..+.. ..-+.++.. .+++.++.+++|+++|+|+..  ++.+.+.+|. .+++....+ .|+ +++|
T Consensus       202 Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~-NgD-Ivvg  276 (745)
T KOG0301|consen  202 IRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLL-NGD-IVVG  276 (745)
T ss_pred             EEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEee-CCC-EEEe
Confidence            999999 6888877764 455999994 455666677899999999987  7888888876 455555554 355 8899


Q ss_pred             cCCCeEEEEECC
Q 024372          247 GEDMWVHVFDFH  258 (268)
Q Consensus       247 s~d~~i~~wd~~  258 (268)
                      +.||.||+|-..
T Consensus       277 ~SDG~VrVfT~~  288 (745)
T KOG0301|consen  277 GSDGRVRVFTVD  288 (745)
T ss_pred             ccCceEEEEEec
Confidence            999999999764

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=2.2e-27  Score=205.42  Aligned_cols=223  Identities=17%  Similarity=0.302  Sum_probs=176.1

Q ss_pred             cEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCC-----CC--e------eee
Q 024372           32 FFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT-----GD--E------KHS   98 (268)
Q Consensus        32 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~-----~~--~------~~~   98 (268)
                      +++++|...|.+.++|.....++.++++|.+.+++++.+||+..++|||.|++|++||..-     +.  .      .++
T Consensus       425 ~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rt  504 (888)
T KOG0306|consen  425 RYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRT  504 (888)
T ss_pred             ceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceE
Confidence            3444444444444444444444555678999999999999999999999999999999631     11  1      134


Q ss_pred             eccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCC
Q 024372           99 FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG  178 (268)
Q Consensus        99 ~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~  178 (268)
                      ++.++.|.|+.+|||+++|+.+--|+++++|-+++-+.. -...+|.=||.|+..+|+. .++++|+.|+.|+||-+.=|
T Consensus       505 Lel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFf-lsLYGHkLPV~smDIS~DS-klivTgSADKnVKiWGLdFG  582 (888)
T KOG0306|consen  505 LELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFF-LSLYGHKLPVLSMDISPDS-KLIVTGSADKNVKIWGLDFG  582 (888)
T ss_pred             EeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeee-eeecccccceeEEeccCCc-CeEEeccCCCceEEeccccc
Confidence            455678999999999999999999999999988753322 2345788899999998865 57778889999999999999


Q ss_pred             ceEEeecC-CCCEEEEEECCCCcE-EEEeCCCeEEEEeCCCceeeeEEeCCC-CceeeEEcCCCCCEEEeccCCCeEEEE
Q 024372          179 KIVQTLET-KSPVTSAEVSRDGRY-ITTADGSSVKFWDANHFGLVKGYNMPC-NTESASLEPKLGNIFIAGGEDMWVHVF  255 (268)
Q Consensus       179 ~~~~~~~~-~~~v~~~~~s~~g~~-l~~~~~~~v~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gs~d~~i~~w  255 (268)
                      .|-+.+-. ...|.++.|-|...+ +++|-|+.|+.||-+++++++.+..+. ...+.+..| .|++++++|.|..|++|
T Consensus       583 DCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~-~G~~vvs~shD~sIRlw  661 (888)
T KOG0306|consen  583 DCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSP-NGSFVVSSSHDKSIRLW  661 (888)
T ss_pred             hhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcC-CCCeEEeccCCceeEee
Confidence            99887654 456899999998655 456789999999999999998887654 566777777 69999999999999999


Q ss_pred             EC
Q 024372          256 DF  257 (268)
Q Consensus       256 d~  257 (268)
                      ..
T Consensus       662 E~  663 (888)
T KOG0306|consen  662 ER  663 (888)
T ss_pred             ec
Confidence            85

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.96  E-value=7.5e-27  Score=191.87  Aligned_cols=243  Identities=21%  Similarity=0.263  Sum_probs=191.6

Q ss_pred             ecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC----e------EEEeeCccCcEEEEEecCCC-cEEEEeeCC
Q 024372           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD----W------IGTFEGHKGAVWSCCLDANA-LFSASGSAD   82 (268)
Q Consensus        14 ~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~----~------~~~~~~h~~~V~~~~~~~~~-~~l~s~s~D   82 (268)
                      .|.+.|+.+.+.|..|  +.+|+.+..+.+.|||..+-.    .      -.+|.||+..=+.++|++.. ..|++++.|
T Consensus       122 ~h~gEVnRaRymPQnp--~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d  199 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNP--NIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD  199 (422)
T ss_pred             cCCccchhhhhCCCCC--cEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence            6999999999999755  589999999999999876531    1      12788999877889998765 568999999


Q ss_pred             CcEEEEeCCCCCe-------eeee-ccCCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCC-CCCCeEecCCcccEEEEE
Q 024372           83 FTAKLWDALTGDE-------KHSF-EHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRP-DAPPREVGNSSGSIRTVA  152 (268)
Q Consensus        83 ~~v~iw~~~~~~~-------~~~~-~~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~-~~~~~~~~~~~~~v~~~~  152 (268)
                      ++|.+||+.....       ...+ .|...|..++|++ +..+|++++.|+.+.+||+++. .........|.+++.|++
T Consensus       200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~  279 (422)
T KOG0264|consen  200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVA  279 (422)
T ss_pred             CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEE
Confidence            9999999975443       1122 4888999999999 6678999999999999999862 222334456889999999


Q ss_pred             EeCCCCcEEEEeeCCCeEEEEeCCCC-ceEEeecCC-CCEEEEEECCCCc-EEEE-eCCCeEEEEeCCCceee-------
Q 024372          153 WLHSDQTILSSCTDSGGVRLWDARSG-KIVQTLETK-SPVTSAEVSRDGR-YITT-ADGSSVKFWDANHFGLV-------  221 (268)
Q Consensus       153 ~~~~~~~~~~~~~~d~~i~iwd~~~~-~~~~~~~~~-~~v~~~~~s~~g~-~l~~-~~~~~v~~wd~~~~~~~-------  221 (268)
                      |+|-+.+++++|+.|++|.+||+|.- +++++++.+ ..|.++.|+|+.. .+++ +.|+.+.+||+......       
T Consensus       280 fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~  359 (422)
T KOG0264|consen  280 FNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAE  359 (422)
T ss_pred             eCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhc
Confidence            99999999999999999999999985 467888754 5699999999864 4554 57999999999643222       


Q ss_pred             -------eEEeCCC-CceeeEEcCCCCCEEEeccCCCeEEEEECC
Q 024372          222 -------KGYNMPC-NTESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (268)
Q Consensus       222 -------~~~~~~~-~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~  258 (268)
                             -.+..+. .+..+.+.|...-.++++++|..+.||.+.
T Consensus       360 dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  360 DGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             cCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence                   2222222 345667778777788889999999999975

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.95  E-value=1.3e-27  Score=189.58  Aligned_cols=240  Identities=16%  Similarity=0.224  Sum_probs=204.1

Q ss_pred             eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEee-CccCcEEEEEecCCCcEEEEeeCCCcEEEEeCC
Q 024372           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE-GHKGAVWSCCLDANALFSASGSADFTAKLWDAL   91 (268)
Q Consensus        13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~   91 (268)
                      .-|..+|.++.|+   .|..+||+|+.||+|++|.+++|.+++.|. .|+..|.+++|+.|+..++|+|.|.++|+--+.
T Consensus       260 MMmd~aVlci~FS---RDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlK  336 (508)
T KOG0275|consen  260 MMMDDAVLCISFS---RDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLK  336 (508)
T ss_pred             eecccceEEEeec---ccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccc
Confidence            3478899999998   588899999999999999999999999996 899999999999999999999999999999999


Q ss_pred             CCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEe-cCCcccEEEEEEeCCCCcEEEEeeCCCe
Q 024372           92 TGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV-GNSSGSIRTVAWLHSDQTILSSCTDSGG  169 (268)
Q Consensus        92 ~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~d~~  169 (268)
                      .+++...+. |.+.|+...|.++|..+++++.|+++++|+..+.+...... .....+|+.+...|.++.-++.|...++
T Consensus       337 SGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsnt  416 (508)
T KOG0275|consen  337 SGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNT  416 (508)
T ss_pred             cchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCe
Confidence            999988875 88999999999999999999999999999987766543322 2345678888888988877888888899


Q ss_pred             EEEEeCCCCceEEeecC----CCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEE
Q 024372          170 VRLWDARSGKIVQTLET----KSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFI  244 (268)
Q Consensus       170 i~iwd~~~~~~~~~~~~----~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (268)
                      |.|-++. |+.++.+..    .+...+++++|-|.++-+ ++|+.++.|....+++-++...+..-.....+.+-...++
T Consensus       417 v~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllA  495 (508)
T KOG0275|consen  417 VYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLA  495 (508)
T ss_pred             EEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhh
Confidence            9999886 788888753    245778899999999876 6789999999999888888877665433333443577889


Q ss_pred             eccCCCeEEEEE
Q 024372          245 AGGEDMWVHVFD  256 (268)
Q Consensus       245 ~gs~d~~i~~wd  256 (268)
                      +-++|+.+++|.
T Consensus       496 sYsEDgllKLWk  507 (508)
T KOG0275|consen  496 SYSEDGLLKLWK  507 (508)
T ss_pred             hhcccchhhhcC
Confidence            999999999995

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=2.7e-26  Score=188.90  Aligned_cols=245  Identities=17%  Similarity=0.278  Sum_probs=199.6

Q ss_pred             EEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeE----EE---e-----------eCccCcEEEEEecC
Q 024372           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWI----GT---F-----------EGHKGAVWSCCLDA   71 (268)
Q Consensus        10 ~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~----~~---~-----------~~h~~~V~~~~~~~   71 (268)
                      .+...|..+|.+++++|   |..+.++++.|++|.=|++.+|+-.    .+   +           ++|...+.++++++
T Consensus       136 ~~~~~H~~s~~~vals~---d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~  212 (479)
T KOG0299|consen  136 RVIGKHQLSVTSVALSP---DDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS  212 (479)
T ss_pred             eeeccccCcceEEEeec---cccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC
Confidence            44457999999999985   8889999999999999999888622    11   1           27888899999999


Q ss_pred             CCcEEEEeeCCCcEEEEeCCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEE
Q 024372           72 NALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRT  150 (268)
Q Consensus        72 ~~~~l~s~s~D~~v~iw~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~  150 (268)
                      |+++||+|+.|..|.||++.+.+.+..+. |...|.+++|-....-+++++.|+.+++|+++.-. ....+..|++.|..
T Consensus       213 Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s-~vetlyGHqd~v~~  291 (479)
T KOG0299|consen  213 DGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS-YVETLYGHQDGVLG  291 (479)
T ss_pred             CCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhH-HHHHHhCCccceee
Confidence            99999999999999999999999888864 88899999998877789999999999999986433 33455578889998


Q ss_pred             EEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEeCCCC-
Q 024372          151 VAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCN-  229 (268)
Q Consensus       151 ~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~~~~-  229 (268)
                      +..+.-. .+++.|..|+++++|++.....+-...+.+.+.|++|-.+..|++++++|.|.+|++.+.+++.++..+++ 
T Consensus       292 IdaL~re-R~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv  370 (479)
T KOG0299|consen  292 IDALSRE-RCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGV  370 (479)
T ss_pred             echhccc-ceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeeccccc
Confidence            8866544 46777778899999999654444434455679999999999999999999999999988888877754322 


Q ss_pred             ------------ceeeEEcCCCCCEEEeccCCCeEEEEECCCC
Q 024372          230 ------------TESASLEPKLGNIFIAGGEDMWVHVFDFHTG  260 (268)
Q Consensus       230 ------------~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g  260 (268)
                                  +.+++..+ ..++|++||.+|.|++|-+..|
T Consensus       371 ~~~~~~~~~~~Witsla~i~-~sdL~asGS~~G~vrLW~i~~g  412 (479)
T KOG0299|consen  371 IPELDPVNGNFWITSLAVIP-GSDLLASGSWSGCVRLWKIEDG  412 (479)
T ss_pred             cCCccccccccceeeeEecc-cCceEEecCCCCceEEEEecCC
Confidence                        23455555 5889999999999999998776

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.2e-26  Score=182.12  Aligned_cols=246  Identities=22%  Similarity=0.308  Sum_probs=196.1

Q ss_pred             ecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEee------CCC------------------------------C
Q 024372            8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRN------GET------------------------------G   51 (268)
Q Consensus         8 ~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~------~~~------------------------------~   51 (268)
                      +.+.+.||.+.|++++|+|   .|.+++++|.|++..||.      +-.                              +
T Consensus       182 CL~~Y~GH~GSVNsikfh~---s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~  258 (481)
T KOG0300|consen  182 CLATYTGHTGSVNSIKFHN---SGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDG  258 (481)
T ss_pred             ceeeecccccceeeEEecc---ccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCC
Confidence            3444569999999999995   789999999999999995      100                              0


Q ss_pred             ----CeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeE
Q 024372           52 ----DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKIL  126 (268)
Q Consensus        52 ----~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i  126 (268)
                          -.+..|.+|.+.|.++.|-..++.++++|+|.+..+||++++..+..+. |....+.++-+|..+++++.+.|.+.
T Consensus       259 ~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTF  338 (481)
T KOG0300|consen  259 HTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTF  338 (481)
T ss_pred             ceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCcee
Confidence                1245678999999999998889999999999999999999999988775 88889999999999999999999999


Q ss_pred             EEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCC-ceEEeecCCCCEEEEEECCCCcEEEE-
Q 024372          127 RIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG-KIVQTLETKSPVTSAEVSRDGRYITT-  204 (268)
Q Consensus       127 ~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~-  204 (268)
                      ++||.+..-.....+.+|...|+++.|.-++ . +++|++|.+|++||++.- .++.++....+++.++++..+.+++. 
T Consensus       339 RLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~-vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiP  416 (481)
T KOG0300|consen  339 RLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-R-VVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIP  416 (481)
T ss_pred             EeccchhhcceeeeecccccceeEEEEecCC-c-eeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEec
Confidence            9999985444455677889999999987654 3 567889999999999874 57888888899999999999988876 


Q ss_pred             eCCCeEEEEeCCCceeeeEE----eCCC-CceeeEEc--CCCCCEEEeccCCCeEEEEECCC
Q 024372          205 ADGSSVKFWDANHFGLVKGY----NMPC-NTESASLE--PKLGNIFIAGGEDMWVHVFDFHT  259 (268)
Q Consensus       205 ~~~~~v~~wd~~~~~~~~~~----~~~~-~~~~~~~~--~~~~~~~~~gs~d~~i~~wd~~~  259 (268)
                      .+++.||+||+...++.+.-    +.+. +..+++|.  ++ -.-|.++|-|+.+.-|++.+
T Consensus       417 hDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp-~cnLftcGFDR~v~gW~in~  477 (481)
T KOG0300|consen  417 HDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHP-ACNLFTCGFDRMVAGWKINT  477 (481)
T ss_pred             cCCceEEEEecCCCccccCCcccccccceeeeeeeccccCc-ccccccccccceeeeeEecc
Confidence            46789999999765443221    2222 23344443  22 34578899999999998753

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=6.9e-26  Score=178.28  Aligned_cols=238  Identities=17%  Similarity=0.277  Sum_probs=176.7

Q ss_pred             CCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCe
Q 024372           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE   95 (268)
Q Consensus        16 ~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~   95 (268)
                      +..|.++.|+|   .++.|+.+++||++++|++...++...++ |++++.+|+|.++. .+++|+.||.|+++|+++++.
T Consensus        13 ~d~IS~v~f~~---~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~~-~~~~G~~dg~vr~~Dln~~~~   87 (323)
T KOG1036|consen   13 EDGISSVKFSP---SSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADES-TIVTGGLDGQVRRYDLNTGNE   87 (323)
T ss_pred             hhceeeEEEcC---cCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCCc-eEEEeccCceEEEEEecCCcc
Confidence            56899999995   45578888999999999999887776676 89999999999754 568999999999999999999


Q ss_pred             eeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeC
Q 024372           96 KHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA  175 (268)
Q Consensus        96 ~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~  175 (268)
                      .....|..+++|+.+.+-...+++|++|+.|++||.+... ....+ .....|.++...  +..++ .|..+..+.+||+
T Consensus        88 ~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~-~~~~~-d~~kkVy~~~v~--g~~Lv-Vg~~~r~v~iyDL  162 (323)
T KOG1036|consen   88 DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV-VVGTF-DQGKKVYCMDVS--GNRLV-VGTSDRKVLIYDL  162 (323)
T ss_pred             eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc-ccccc-ccCceEEEEecc--CCEEE-EeecCceEEEEEc
Confidence            8889999999999999988889999999999999987522 22222 223478887653  33344 4455699999999


Q ss_pred             CCCceEEee---cCCCCEEEEEECCCC-cEEEEeCCCeE--EEEeCCCceeeeEEeCC------------CCceeeEEcC
Q 024372          176 RSGKIVQTL---ETKSPVTSAEVSRDG-RYITTADGSSV--KFWDANHFGLVKGYNMP------------CNTESASLEP  237 (268)
Q Consensus       176 ~~~~~~~~~---~~~~~v~~~~~s~~g-~~l~~~~~~~v--~~wd~~~~~~~~~~~~~------------~~~~~~~~~~  237 (268)
                      |+.+...+.   ..+..+.++++-|++ -|++++-+|.|  .++|.....--+.|..+            .++.++.|+|
T Consensus       163 Rn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp  242 (323)
T KOG1036|consen  163 RNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP  242 (323)
T ss_pred             ccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecc
Confidence            987653322   234568899999965 46666656654  56666521111222211            1234567777


Q ss_pred             CCCCEEEeccCCCeEEEEECCCCcEEe
Q 024372          238 KLGNIFIAGGEDMWVHVFDFHTGEQIA  264 (268)
Q Consensus       238 ~~~~~~~~gs~d~~i~~wd~~~g~~~~  264 (268)
                      . -..|+|||.||.|.+||..+.+.+.
T Consensus       243 ~-~~tfaTgGsDG~V~~Wd~~~rKrl~  268 (323)
T KOG1036|consen  243 I-HGTFATGGSDGIVNIWDLFNRKRLK  268 (323)
T ss_pred             c-cceEEecCCCceEEEccCcchhhhh
Confidence            4 6679999999999999997665543

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.95  E-value=1.2e-26  Score=182.95  Aligned_cols=211  Identities=20%  Similarity=0.336  Sum_probs=168.9

Q ss_pred             EEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCC------------------Ceeee-eccCCeEEEEEECCCCC
Q 024372           55 GTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG------------------DEKHS-FEHKHIVRACAFSEDTH  115 (268)
Q Consensus        55 ~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~------------------~~~~~-~~~~~~v~~v~~~~~~~  115 (268)
                      ..+..|++++++.+|++||.++||||.|..|+|.|++..                  ..+++ +.|-++|+++.|+|...
T Consensus       106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~  185 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET  185 (430)
T ss_pred             EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence            356779999999999999999999999999999998521                  12333 35889999999999999


Q ss_pred             EEEEeeCCCeEEEEECCCCCCCCeE-ecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEee----cCCCCE
Q 024372          116 LLLTGGFEKILRIFDLNRPDAPPRE-VGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL----ETKSPV  190 (268)
Q Consensus       116 ~l~s~~~d~~i~~~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~----~~~~~v  190 (268)
                      +|++|+.|+++++||......+... ......++.++.|.|.|.. ++.|++..++++||+.+.+|...-    ++...|
T Consensus       186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGef-llvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai  264 (430)
T KOG0640|consen  186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEF-LLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI  264 (430)
T ss_pred             eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCce-EEEecCCCceeEEeccceeEeeecCcccccccce
Confidence            9999999999999998654322111 1123457999999887764 556788899999999999887543    245679


Q ss_pred             EEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCC---CceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEeec
Q 024372          191 TSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPC---NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       191 ~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~~  266 (268)
                      +++.+++.|++.++ +-||.|++||--..+|+.++....   .+.+..| ..+++++.+.|.|+.+++|++.+|.++.+|
T Consensus       265 ~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~F-tkn~kyiLsSG~DS~vkLWEi~t~R~l~~Y  343 (430)
T KOG0640|consen  265 TQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVF-TKNGKYILSSGKDSTVKLWEISTGRMLKEY  343 (430)
T ss_pred             eEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEE-ccCCeEEeecCCcceeeeeeecCCceEEEE
Confidence            99999999987665 568999999998889998885432   2334444 457999999999999999999999999887


Q ss_pred             c
Q 024372          267 S  267 (268)
Q Consensus       267 ~  267 (268)
                      +
T Consensus       344 t  344 (430)
T KOG0640|consen  344 T  344 (430)
T ss_pred             e
Confidence            4

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.95  E-value=1.3e-24  Score=180.74  Aligned_cols=248  Identities=15%  Similarity=0.129  Sum_probs=184.2

Q ss_pred             EeeecCCCeeeEEEecCCCCCcEE-EEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEE-EEeeCCCcEEEE
Q 024372           11 VCHGHSRPVVDLFYSPITPDGFFL-VSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFS-ASGSADFTAKLW   88 (268)
Q Consensus        11 ~~~~h~~~v~~~~f~~~~~dg~~l-~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l-~s~s~D~~v~iw   88 (268)
                      .+.+|. .+.+++|+|   +|..+ ++++.++.+++||..+++.+..+..+.. +..++++|++..+ ++++.|+.+++|
T Consensus        26 ~~~~~~-~~~~l~~~~---dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~  100 (300)
T TIGR03866        26 TFPVGQ-RPRGITLSK---DGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVI  100 (300)
T ss_pred             EEECCC-CCCceEECC---CCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEE
Confidence            344444 467899985   77766 6778899999999999998887776544 4678899999866 455678999999


Q ss_pred             eCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCC-eEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCC
Q 024372           89 DALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEK-ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS  167 (268)
Q Consensus        89 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~-~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d  167 (268)
                      |+.+......+.+...+..++|+|++++++++..++ .+.+||.++........  .......++|++++..+++++..+
T Consensus       101 d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~  178 (300)
T TIGR03866       101 DIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL--VDQRPRFAEFTADGKELWVSSEIG  178 (300)
T ss_pred             ECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE--cCCCccEEEECCCCCEEEEEcCCC
Confidence            999887777776656678899999999999888764 56778986543221111  122456788899888777776667


Q ss_pred             CeEEEEeCCCCceEEeecCC--------CCEEEEEECCCCcEEE--EeCCCeEEEEeCCCceeeeEEeCCCCceeeEEcC
Q 024372          168 GGVRLWDARSGKIVQTLETK--------SPVTSAEVSRDGRYIT--TADGSSVKFWDANHFGLVKGYNMPCNTESASLEP  237 (268)
Q Consensus       168 ~~i~iwd~~~~~~~~~~~~~--------~~v~~~~~s~~g~~l~--~~~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~  237 (268)
                      +.|++||+++++.+..+..+        .....++++|+++++.  .+.++.+.+||+++++.++.......+..+.+.|
T Consensus       179 ~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~  258 (300)
T TIGR03866       179 GTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTP  258 (300)
T ss_pred             CEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECC
Confidence            99999999999887655321        1234688999998743  3456789999999887776555445566777777


Q ss_pred             CCCCEEEec-cCCCeEEEEECCCCcEEeec
Q 024372          238 KLGNIFIAG-GEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       238 ~~~~~~~~g-s~d~~i~~wd~~~g~~~~~~  266 (268)
                       +|++|+++ +.++.|++||+.+++.+...
T Consensus       259 -~g~~l~~~~~~~~~i~v~d~~~~~~~~~~  287 (300)
T TIGR03866       259 -DEKYLLTTNGVSNDVSVIDVAALKVIKSI  287 (300)
T ss_pred             -CCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence             68777765 56899999999999987653

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.3e-26  Score=201.44  Aligned_cols=198  Identities=22%  Similarity=0.363  Sum_probs=164.1

Q ss_pred             eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCC-CcEEEEeeCCCcEEEEeCC
Q 024372           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN-ALFSASGSADFTAKLWDAL   91 (268)
Q Consensus        13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~-~~~l~s~s~D~~v~iw~~~   91 (268)
                      .||...|++|.|+    ..++|+++|.|+|+|+|.+...++++.|. |.+-|++|+|.|. .+|++|||-||.+|||++.
T Consensus       366 ~GHt~DILDlSWS----Kn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~  440 (712)
T KOG0283|consen  366 KGHTADILDLSWS----KNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSIS  440 (712)
T ss_pred             hccchhheecccc----cCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEeecC
Confidence            5999999999998    45699999999999999999999999997 9999999999984 5789999999999999999


Q ss_pred             CCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeE-ecCC------cccEEEEEEeCCCCc-EEEE
Q 024372           92 TGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE-VGNS------SGSIRTVAWLHSDQT-ILSS  163 (268)
Q Consensus        92 ~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~-~~~~------~~~v~~~~~~~~~~~-~~~~  163 (268)
                      ..+...-....+.|++++|.|+|+..+.|+.+|.+++|+...-+..... +..+      ...|+.+.++|.... +|++
T Consensus       441 d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVT  520 (712)
T KOG0283|consen  441 DKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVT  520 (712)
T ss_pred             cCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEe
Confidence            8888777777889999999999999999999999999997532211111 1111      226999999987765 5555


Q ss_pred             eeCCCeEEEEeCCCCceEEeecCCC---CEEEEEECCCCcEEEE-eCCCeEEEEeCC
Q 024372          164 CTDSGGVRLWDARSGKIVQTLETKS---PVTSAEVSRDGRYITT-ADGSSVKFWDAN  216 (268)
Q Consensus       164 ~~~d~~i~iwd~~~~~~~~~~~~~~---~v~~~~~s~~g~~l~~-~~~~~v~~wd~~  216 (268)
                       +.|..|||+|.+..+.+..|++..   .=....|+.||++|++ ++|..|++|+..
T Consensus       521 -SnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~  576 (712)
T KOG0283|consen  521 -SNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKND  576 (712)
T ss_pred             -cCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence             456899999999888888887432   2346789999999886 478999999973

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=2.7e-24  Score=169.93  Aligned_cols=235  Identities=17%  Similarity=0.239  Sum_probs=178.8

Q ss_pred             cCCCeeeEEEecCCCCCcEEEEEeC--CCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCC
Q 024372           15 HSRPVVDLFYSPITPDGFFLVSASK--DSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT   92 (268)
Q Consensus        15 h~~~v~~~~f~~~~~dg~~l~s~s~--d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~   92 (268)
                      +.-.|..+.|-.   .-+.++.+|.  |.+||+-++.++++++.|.||+..|.+++.+|-+..++|+|.|++||+||++.
T Consensus        55 kkyG~~~~~Fth---~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~  131 (311)
T KOG1446|consen   55 KKYGVDLACFTH---HSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRV  131 (311)
T ss_pred             ccccccEEEEec---CCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecC
Confidence            344677777743   2234555665  99999999999999999999999999999999999999999999999999997


Q ss_pred             CCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCC-CCeEec---CCcccEEEEEEeCCCCcEEEEeeCCC
Q 024372           93 GDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDA-PPREVG---NSSGSIRTVAWLHSDQTILSSCTDSG  168 (268)
Q Consensus        93 ~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~-~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~d~  168 (268)
                      .++...+.... -..++|.|+|-++|++...+.|++||++.... +.+.+.   ......+.+.|+++|..++++ +..+
T Consensus       132 ~~cqg~l~~~~-~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLls-T~~s  209 (311)
T KOG1446|consen  132 KKCQGLLNLSG-RPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLS-TNAS  209 (311)
T ss_pred             CCCceEEecCC-CcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEE-eCCC
Confidence            77766554322 23478999999999999888999999986532 223332   224567889999999887776 4558


Q ss_pred             eEEEEeCCCCceEEeecCCC----CEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeCCC-C-ceeeEEcCCCCC
Q 024372          169 GVRLWDARSGKIVQTLETKS----PVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPC-N-TESASLEPKLGN  241 (268)
Q Consensus       169 ~i~iwd~~~~~~~~~~~~~~----~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~~-~-~~~~~~~~~~~~  241 (268)
                      .+.+.|.-+|..+.++....    -.....|+||++++.++ +|++|.+|+++++..+..+..+. . ...+.+.| --.
T Consensus       210 ~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP-~~~  288 (311)
T KOG1446|consen  210 FIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNP-RYA  288 (311)
T ss_pred             cEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCC-cee
Confidence            99999999999888886432    23588999999998876 56999999999998888887752 2 23334444 355


Q ss_pred             EEEeccCCCeEEEEEC
Q 024372          242 IFIAGGEDMWVHVFDF  257 (268)
Q Consensus       242 ~~~~gs~d~~i~~wd~  257 (268)
                      +|++++..  +-+|=.
T Consensus       289 mf~sa~s~--l~fw~p  302 (311)
T KOG1446|consen  289 MFVSASSN--LVFWLP  302 (311)
T ss_pred             eeeecCce--EEEEec
Confidence            66666555  666643

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.95  E-value=1.1e-25  Score=193.39  Aligned_cols=234  Identities=19%  Similarity=0.357  Sum_probs=191.5

Q ss_pred             EeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEE--EeeCccCcEEE-EEecC-CCcEEEEeeCCCcEE
Q 024372           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIG--TFEGHKGAVWS-CCLDA-NALFSASGSADFTAK   86 (268)
Q Consensus        11 ~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~--~~~~h~~~V~~-~~~~~-~~~~l~s~s~D~~v~   86 (268)
                      .++||...|+++++.    ++-.++++|+|+++++|+....+++.  .+.+|.+.|.. ++|.+ ++-.+++|+.|+++.
T Consensus         9 ~l~gH~~DVr~v~~~----~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~   84 (745)
T KOG0301|consen    9 ELEGHKSDVRAVAVT----DGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTII   84 (745)
T ss_pred             EeccCccchheeEec----CCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEE
Confidence            457999999999986    45589999999999999988777664  56789888876 77764 444588999999999


Q ss_pred             EEeCCCCCeeeee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEee
Q 024372           87 LWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT  165 (268)
Q Consensus        87 iw~~~~~~~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  165 (268)
                      +|...+..+..++ .|+..|.+++...++. +++||+|.+.++|-..  +. ......|+..|.++...|++  .+++|+
T Consensus        85 v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l-~~~l~gH~asVWAv~~l~e~--~~vTgs  158 (745)
T KOG0301|consen   85 VFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--EL-VYSLQGHTASVWAVASLPEN--TYVTGS  158 (745)
T ss_pred             EEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecch--hh-hcccCCcchheeeeeecCCC--cEEecc
Confidence            9999998888876 4999898888777776 8999999999999653  22 23356789999999999987  455667


Q ss_pred             CCCeEEEEeCCCCceEEeecCCCC-EEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEeCCCC-ceeeEEcCCCCCEE
Q 024372          166 DSGGVRLWDARSGKIVQTLETKSP-VTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCN-TESASLEPKLGNIF  243 (268)
Q Consensus       166 ~d~~i~iwd~~~~~~~~~~~~~~~-v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  243 (268)
                      .|++||+|.-  ++.+++|..|.. |..+++-|++.|++++.|+.|++|++ +++++..+..+.. ..++.... +++.+
T Consensus       159 aDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~-~~~~I  234 (745)
T KOG0301|consen  159 ADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMAL-SDGLI  234 (745)
T ss_pred             CcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecC-CCCeE
Confidence            7899999976  788889987655 89999999999999999999999999 5666766766655 34555444 58889


Q ss_pred             EeccCCCeEEEEECC
Q 024372          244 IAGGEDMWVHVFDFH  258 (268)
Q Consensus       244 ~~gs~d~~i~~wd~~  258 (268)
                      +++|+|+++++|+..
T Consensus       235 vs~gEDrtlriW~~~  249 (745)
T KOG0301|consen  235 VSTGEDRTLRIWKKD  249 (745)
T ss_pred             EEecCCceEEEeecC
Confidence            999999999999965

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=3.8e-24  Score=162.28  Aligned_cols=245  Identities=18%  Similarity=0.277  Sum_probs=184.8

Q ss_pred             eeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEee------CCCC----C-----eEEEeeCccCcEEEEEec
Q 024372            6 VAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRN------GETG----D-----WIGTFEGHKGAVWSCCLD   70 (268)
Q Consensus         6 ~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~------~~~~----~-----~~~~~~~h~~~V~~~~~~   70 (268)
                      +++...+ ..+..|++++|+|   .|.+-|.||+.++.+|..      ++.+    +     +-+.-+.|++.|++.+|+
T Consensus        23 f~~i~~l-~dsqairav~fhp---~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws   98 (350)
T KOG0641|consen   23 FEAINIL-EDSQAIRAVAFHP---AGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWS   98 (350)
T ss_pred             eEEEEEe-cchhheeeEEecC---CCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEec
Confidence            3444434 5677899999996   778889999999999962      2211    1     112235689999999999


Q ss_pred             CCCcEEEEeeCCCcEEEEeCCCCCeee-----ee-ccCCeEEEEEECC----CCCEEEEee-CCCeEEEEECCCCCCCCe
Q 024372           71 ANALFSASGSADFTAKLWDALTGDEKH-----SF-EHKHIVRACAFSE----DTHLLLTGG-FEKILRIFDLNRPDAPPR  139 (268)
Q Consensus        71 ~~~~~l~s~s~D~~v~iw~~~~~~~~~-----~~-~~~~~v~~v~~~~----~~~~l~s~~-~d~~i~~~d~~~~~~~~~  139 (268)
                      |+|.++|+||.|++|++-..+...+..     .+ -|...|+.++|-.    .+.+|++++ .|-.|.+-|-..+. ..+
T Consensus        99 ~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~-~~~  177 (350)
T KOG0641|consen   99 PCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ-GFH  177 (350)
T ss_pred             CccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC-cce
Confidence            999999999999999997665433222     22 2777899999944    356777765 34445444554443 345


Q ss_pred             EecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecC--------CCCEEEEEECCCCcEEEEe-CCCeE
Q 024372          140 EVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET--------KSPVTSAEVSRDGRYITTA-DGSSV  210 (268)
Q Consensus       140 ~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~--------~~~v~~~~~s~~g~~l~~~-~~~~v  210 (268)
                      ....|.+.|..+- + -++.++++|+.|++||+||+|-..++.++..        ...|.++++.|.|++++++ .|...
T Consensus       178 a~sghtghilaly-s-wn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc  255 (350)
T KOG0641|consen  178 ALSGHTGHILALY-S-WNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSC  255 (350)
T ss_pred             eecCCcccEEEEE-E-ecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCce
Confidence            5667888887753 2 2457899999999999999999999988742        1458899999999999987 58899


Q ss_pred             EEEeCCCceeeeEEeCCC-CceeeEEcCCCCCEEEeccCCCeEEEEECC
Q 024372          211 KFWDANHFGLVKGYNMPC-NTESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (268)
Q Consensus       211 ~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~  258 (268)
                      .+||++.++.++.|.-+. .+.++.|+| ...++.++|.|..|++=|++
T Consensus       256 ~lydirg~r~iq~f~phsadir~vrfsp-~a~yllt~syd~~ikltdlq  303 (350)
T KOG0641|consen  256 MLYDIRGGRMIQRFHPHSADIRCVRFSP-GAHYLLTCSYDMKIKLTDLQ  303 (350)
T ss_pred             EEEEeeCCceeeeeCCCccceeEEEeCC-CceEEEEecccceEEEeecc
Confidence            999999999998886544 456677776 68999999999999999985

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=7.3e-27  Score=202.75  Aligned_cols=238  Identities=17%  Similarity=0.258  Sum_probs=193.6

Q ss_pred             eeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC---CCeEEEeeCccCcEEEEEecCCC-cEEEEeeCCCcEEEEeCCCCC
Q 024372           19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGET---GDWIGTFEGHKGAVWSCCLDANA-LFSASGSADFTAKLWDALTGD   94 (268)
Q Consensus        19 v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~---~~~~~~~~~h~~~V~~~~~~~~~-~~l~s~s~D~~v~iw~~~~~~   94 (268)
                      ...+.|..  -+.++||+++..|.|.+||+..   .+++..|..|+-.|.++.|++.. .+|+|||+||+||+||+...+
T Consensus        90 ~~DVkW~~--~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~  167 (839)
T KOG0269|consen   90 AADVKWGQ--LYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK  167 (839)
T ss_pred             hhhccccc--chhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc
Confidence            34667763  4668999999999999999988   67778899999999999998765 678999999999999999888


Q ss_pred             eeeeec-cCCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEE
Q 024372           95 EKHSFE-HKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRL  172 (268)
Q Consensus        95 ~~~~~~-~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~i  172 (268)
                      ...++. ..+.|+.|.|+| .+..++++...|.+++||++.+......+..|.|+|.|+.|+| ++.++++|+.|+.|+|
T Consensus       168 S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhP-nr~~lATGGRDK~vki  246 (839)
T KOG0269|consen  168 SKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHP-NREWLATGGRDKMVKI  246 (839)
T ss_pred             ccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecC-CCceeeecCCCccEEE
Confidence            776664 566899999999 6789999999999999999987665566778999999999999 5567888889999999


Q ss_pred             EeCCCCc--eEEeecCCCCEEEEEECCCCcE-EEEe---CCCeEEEEeCCC-ceeeeEEeCCCCceeeE-EcCCCCCEEE
Q 024372          173 WDARSGK--IVQTLETKSPVTSAEVSRDGRY-ITTA---DGSSVKFWDANH-FGLVKGYNMPCNTESAS-LEPKLGNIFI  244 (268)
Q Consensus       173 wd~~~~~--~~~~~~~~~~v~~~~~s~~g~~-l~~~---~~~~v~~wd~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~  244 (268)
                      ||..+.+  .+.+++...++.+++|-|...+ |+++   .|-.|++||++. |-+-.+|.-+....... |...+...|.
T Consensus       247 Wd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~  326 (839)
T KOG0269|consen  247 WDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLW  326 (839)
T ss_pred             EeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeE
Confidence            9997654  4567777789999999999866 4433   478999999954 65666776666655444 4443567888


Q ss_pred             eccCCCeEEEEECCC
Q 024372          245 AGGEDMWVHVFDFHT  259 (268)
Q Consensus       245 ~gs~d~~i~~wd~~~  259 (268)
                      ++|.|+.|..-.+++
T Consensus       327 s~sKD~tv~qh~~kn  341 (839)
T KOG0269|consen  327 SCSKDGTVLQHLFKN  341 (839)
T ss_pred             eecCccHHHHhhhhc
Confidence            999999887776654

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.95  E-value=3.9e-25  Score=173.35  Aligned_cols=204  Identities=23%  Similarity=0.358  Sum_probs=168.6

Q ss_pred             eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC------eEEE----e-----eCccCcEEEEEecC-CCcEE
Q 024372           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD------WIGT----F-----EGHKGAVWSCCLDA-NALFS   76 (268)
Q Consensus        13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~------~~~~----~-----~~h~~~V~~~~~~~-~~~~l   76 (268)
                      ..|-+.|+++...|  ..|+|+++|+.||.|.+||++...      ++..    .     .+|+-.|.++.|-| |.-++
T Consensus        40 r~HgGsvNsL~id~--tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF  117 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDL--TEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF  117 (397)
T ss_pred             ccCCCccceeeecc--ccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence            46899999999988  479999999999999999987532      1111    1     35888899988876 44677


Q ss_pred             EEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEEECC---CCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEE
Q 024372           77 ASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSE---DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAW  153 (268)
Q Consensus        77 ~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~---~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~  153 (268)
                      .|+|.|+++|+||.++.+....|.-++.|..-+++|   ...++|+|..+-.|++-|+.++... ....+|.+.|.++.|
T Consensus       118 tssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~s-H~LsGHr~~vlaV~W  196 (397)
T KOG4283|consen  118 TSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFS-HTLSGHRDGVLAVEW  196 (397)
T ss_pred             ecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcce-eeeccccCceEEEEe
Confidence            899999999999999999999999999999988988   3567888889999999999887643 455678899999999


Q ss_pred             eCCCCcEEEEeeCCCeEEEEeCCCC-ceEEeecC---------------CCCEEEEEECCCCcEEE-EeCCCeEEEEeCC
Q 024372          154 LHSDQTILSSCTDSGGVRLWDARSG-KIVQTLET---------------KSPVTSAEVSRDGRYIT-TADGSSVKFWDAN  216 (268)
Q Consensus       154 ~~~~~~~~~~~~~d~~i~iwd~~~~-~~~~~~~~---------------~~~v~~~~~s~~g~~l~-~~~~~~v~~wd~~  216 (268)
                      +|...+++++|+-||.||+||+|.. -|+..+..               .+.++.++|+.+|++++ ++.|..+++|+..
T Consensus       197 sp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~  276 (397)
T KOG4283|consen  197 SPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNME  276 (397)
T ss_pred             ccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecc
Confidence            9999999999999999999999865 45444421               24689999999999876 5778999999987


Q ss_pred             Cce
Q 024372          217 HFG  219 (268)
Q Consensus       217 ~~~  219 (268)
                      +++
T Consensus       277 ~G~  279 (397)
T KOG4283|consen  277 SGR  279 (397)
T ss_pred             cCc
Confidence            653

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.95  E-value=9.1e-26  Score=188.28  Aligned_cols=250  Identities=18%  Similarity=0.239  Sum_probs=183.6

Q ss_pred             EEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC----eEEEe-eCccCcEEEEEecCCCcEEEEeeCCCc
Q 024372           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD----WIGTF-EGHKGAVWSCCLDANALFSASGSADFT   84 (268)
Q Consensus        10 ~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~----~~~~~-~~h~~~V~~~~~~~~~~~l~s~s~D~~   84 (268)
                      +.+.+|+..|.++++.|   .|..|++||.|.+|++||.....    ..+.| .+-..+|++++|++.+..|+..+....
T Consensus       161 i~l~hgtk~Vsal~~Dp---~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq  237 (641)
T KOG0772|consen  161 IQLKHGTKIVSALAVDP---SGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQ  237 (641)
T ss_pred             EeccCCceEEEEeeecC---CCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcc
Confidence            45668999999999985   79999999999999999986542    22223 234568999999999988877777889


Q ss_pred             EEEEeCCCCCeeee-------------eccCCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCCCeEec-----CCc
Q 024372           85 AKLWDALTGDEKHS-------------FEHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVG-----NSS  145 (268)
Q Consensus        85 v~iw~~~~~~~~~~-------------~~~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~-----~~~  145 (268)
                      ++|+|-........             -.|...++|.+|+| +...++|++.|+++|+||++......+.+.     ...
T Consensus       238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~R  317 (641)
T KOG0772|consen  238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKR  317 (641)
T ss_pred             eeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcc
Confidence            99999754332222             13666899999999 456889999999999999987654433332     233


Q ss_pred             ccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCce--EEee-c---CCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCc
Q 024372          146 GSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI--VQTL-E---TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHF  218 (268)
Q Consensus       146 ~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~--~~~~-~---~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~  218 (268)
                      -+++..+|++++.. ++++..||.|.+||.++...  ...+ +   ....+.|+.||+||++|++ +.|+++++||++++
T Consensus       318 v~~tsC~~nrdg~~-iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~  396 (641)
T KOG0772|consen  318 VPVTSCAWNRDGKL-IAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQF  396 (641)
T ss_pred             cCceeeecCCCcch-hhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccc
Confidence            45777899998876 55555679999999865322  2222 2   2346999999999999987 78899999999986


Q ss_pred             -eeeeEEeC---CCCceeeEEcCCCCCEEEeccC------CCeEEEEECCCCcEEe
Q 024372          219 -GLVKGYNM---PCNTESASLEPKLGNIFIAGGE------DMWVHVFDFHTGEQIA  264 (268)
Q Consensus       219 -~~~~~~~~---~~~~~~~~~~~~~~~~~~~gs~------d~~i~~wd~~~g~~~~  264 (268)
                       +++..+..   +.....++|+| +.+++++|..      -+++++||..+-+.+.
T Consensus       397 kkpL~~~tgL~t~~~~tdc~FSP-d~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~  451 (641)
T KOG0772|consen  397 KKPLNVRTGLPTPFPGTDCCFSP-DDKLILTGTSAPNGMTAGTLFFFDRMTLDTVY  451 (641)
T ss_pred             ccchhhhcCCCccCCCCccccCC-CceEEEecccccCCCCCceEEEEeccceeeEE
Confidence             34444432   23345677777 6888988854      3679999987666554

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.94  E-value=1.3e-25  Score=187.43  Aligned_cols=250  Identities=20%  Similarity=0.278  Sum_probs=182.1

Q ss_pred             CCcceeeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeE------------EEeeCccCcEEEEE
Q 024372            1 MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWI------------GTFEGHKGAVWSCC   68 (268)
Q Consensus         1 ~~~~~~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~------------~~~~~h~~~V~~~~   68 (268)
                      ||-.+-..-.+.....+.|+++.|+|   .|.++++.+.....+++|-.--+.+            ..-+||.+.+.+.+
T Consensus       199 Mdas~~~fr~l~P~E~h~i~sl~ys~---Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~  275 (641)
T KOG0772|consen  199 MDASMRSFRQLQPCETHQINSLQYSV---TGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGC  275 (641)
T ss_pred             ccccchhhhccCcccccccceeeecC---CCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccc
Confidence            33333332222345667899999986   6778888999999999985432222            22368999999999


Q ss_pred             ecCCC-cEEEEeeCCCcEEEEeCCCCCeee-eecc------CCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCe-
Q 024372           69 LDANA-LFSASGSADFTAKLWDALTGDEKH-SFEH------KHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR-  139 (268)
Q Consensus        69 ~~~~~-~~l~s~s~D~~v~iw~~~~~~~~~-~~~~------~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~-  139 (268)
                      |+|+. ..++|++.|+++|+||++..+... .+.+      .-++..|.|+++++++|+|+.||.|.+|+.+....... 
T Consensus       276 whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~  355 (641)
T KOG0772|consen  276 WHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVM  355 (641)
T ss_pred             cccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccce
Confidence            99986 467899999999999998765422 3322      22678999999999999999999999999754332221 


Q ss_pred             -EecCCcc--cEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCC-ceEEeec---CCCCEEEEEECCCCcEEEEeC------
Q 024372          140 -EVGNSSG--SIRTVAWLHSDQTILSSCTDSGGVRLWDARSG-KIVQTLE---TKSPVTSAEVSRDGRYITTAD------  206 (268)
Q Consensus       140 -~~~~~~~--~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~-~~~~~~~---~~~~v~~~~~s~~g~~l~~~~------  206 (268)
                       ....|..  .|+||.|++++..+++-|. |+++++||+|.. +++....   ...+...++|||+.+++++|.      
T Consensus       356 ~vk~AH~~g~~Itsi~FS~dg~~LlSRg~-D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~  434 (641)
T KOG0772|consen  356 KVKDAHLPGQDITSISFSYDGNYLLSRGF-DDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGM  434 (641)
T ss_pred             EeeeccCCCCceeEEEeccccchhhhccC-CCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCC
Confidence             1223444  8999999998877676665 589999999975 4454432   234567899999999988763      


Q ss_pred             -CCeEEEEeCCCceeeeEEeCCCC-ceeeEEcCCCCCEEEeccCCCeEEEE
Q 024372          207 -GSSVKFWDANHFGLVKGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVF  255 (268)
Q Consensus       207 -~~~v~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gs~d~~i~~w  255 (268)
                       .+.+.+||..++..+..+.+... +..+.|+|..++ +.+|+.||.++||
T Consensus       435 ~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQ-i~~gsgdG~~~vy  484 (641)
T KOG0772|consen  435 TAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQ-IFAGSGDGTAHVY  484 (641)
T ss_pred             CCceEEEEeccceeeEEEecCCCceEEEEeecchhhh-eeeecCCCceEEE
Confidence             25799999999999888877643 456777886555 5566777888887

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.94  E-value=5.9e-25  Score=181.00  Aligned_cols=262  Identities=19%  Similarity=0.194  Sum_probs=202.0

Q ss_pred             CcceeeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCC----CeEEEeeCccCcEEEEEecCCC-cEE
Q 024372            2 DKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG----DWIGTFEGHKGAVWSCCLDANA-LFS   76 (268)
Q Consensus         2 ~~~~~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~----~~~~~~~~h~~~V~~~~~~~~~-~~l   76 (268)
                      |...+..+.+..-|.++|.+++|+|.. ..+++|+|..-|+|-+||..+.    +-+..+..|.++|..+.|+|.+ ..+
T Consensus       172 ~l~~~~~~~v~kv~~~Rit~l~fHPt~-~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i  250 (498)
T KOG4328|consen  172 DLDDYRILNVAKVTDRRITSLAFHPTE-NRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQI  250 (498)
T ss_pred             ccccceecceeEecccceEEEEecccC-cceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhe
Confidence            344455555666789999999999954 4579999999999999999532    3466788899999999999876 578


Q ss_pred             EEeeCCCcEEEEeCCCCCeeeeecc---CCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEE
Q 024372           77 ASGSADFTAKLWDALTGDEKHSFEH---KHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAW  153 (268)
Q Consensus        77 ~s~s~D~~v~iw~~~~~~~~~~~~~---~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~  153 (268)
                      ++.|.||+||+-|++.+.....+..   ......+.|+.+...++.+..=|.+.+||++.+.........|...|..+++
T Consensus       251 ~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~  330 (498)
T KOG4328|consen  251 YSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVAL  330 (498)
T ss_pred             eeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeec
Confidence            8999999999999987765443332   2235567788877767777666799999998876555545556669999999


Q ss_pred             eCCCCcEEEEeeCCCeEEEEeCCCCc-----eEEeecCCCCEEEEEECCCC-cEEEEeCCCeEEEEeCC----CceeeeE
Q 024372          154 LHSDQTILSSCTDSGGVRLWDARSGK-----IVQTLETKSPVTSAEVSRDG-RYITTADGSSVKFWDAN----HFGLVKG  223 (268)
Q Consensus       154 ~~~~~~~~~~~~~d~~i~iwd~~~~~-----~~~~~~~~~~v~~~~~s~~g-~~l~~~~~~~v~~wd~~----~~~~~~~  223 (268)
                      +|..++++++++-|++.+|||+|.-.     .+.++.|...|+++.|||.+ +++.++.|..||+||..    ...+..+
T Consensus       331 NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~  410 (498)
T KOG4328|consen  331 NPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGT  410 (498)
T ss_pred             CCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccce
Confidence            99999999999999999999998632     36777888889999999986 55556789999999983    3444445


Q ss_pred             EeCCCC------ceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEee
Q 024372          224 YNMPCN------TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       224 ~~~~~~------~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~  265 (268)
                      +.++..      .....|.| +..++++|-.-+.|-++|-..|+++..
T Consensus       411 I~Hn~~t~RwlT~fKA~W~P-~~~li~vg~~~r~IDv~~~~~~q~v~e  457 (498)
T KOG4328|consen  411 IPHNNRTGRWLTPFKAAWDP-DYNLIVVGRYPRPIDVFDGNGGQMVCE  457 (498)
T ss_pred             eeccCcccccccchhheeCC-CccEEEEeccCcceeEEcCCCCEEeee
Confidence            544322      23456666 688999999888899999988886654

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=7.4e-25  Score=179.81  Aligned_cols=234  Identities=25%  Similarity=0.361  Sum_probs=182.2

Q ss_pred             CCCcEEEEEeCCCCeEEeeCCCCC---eEE------------------EeeCccCcEEEEEecCCC-cEEEEeeCCCcEE
Q 024372           29 PDGFFLVSASKDSSPMLRNGETGD---WIG------------------TFEGHKGAVWSCCLDANA-LFSASGSADFTAK   86 (268)
Q Consensus        29 ~dg~~l~s~s~d~~i~iw~~~~~~---~~~------------------~~~~h~~~V~~~~~~~~~-~~l~s~s~D~~v~   86 (268)
                      .-|+|+|.|+.|-.|.|||+.-..   ..-                  ...+|+..|.+++|...- ..|||||.|++|+
T Consensus       190 ~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~  269 (463)
T KOG0270|consen  190 GAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVK  269 (463)
T ss_pred             CCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEE
Confidence            348899999999999999875321   001                  123799999999887654 5789999999999


Q ss_pred             EEeCCCCCeeeeec-cCCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEe
Q 024372           87 LWDALTGDEKHSFE-HKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC  164 (268)
Q Consensus        87 iw~~~~~~~~~~~~-~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  164 (268)
                      +||+.++++..++. |...|.++.|+| .+.+|++|++|+++++.|.+.+....... ...+.|..++|.|...+.+..+
T Consensus       270 lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w-k~~g~VEkv~w~~~se~~f~~~  348 (463)
T KOG0270|consen  270 LWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW-KFDGEVEKVAWDPHSENSFFVS  348 (463)
T ss_pred             EEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE-EeccceEEEEecCCCceeEEEe
Confidence            99999999999998 778999999999 67899999999999999998644333333 3467899999999888888889


Q ss_pred             eCCCeEEEEeCCCC-ceEEeecC-CCCEEEEEECCCCcE-EE-EeCCCeEEEEeCCCc--eeeeEEeCCCC-ceeeEEcC
Q 024372          165 TDSGGVRLWDARSG-KIVQTLET-KSPVTSAEVSRDGRY-IT-TADGSSVKFWDANHF--GLVKGYNMPCN-TESASLEP  237 (268)
Q Consensus       165 ~~d~~i~iwd~~~~-~~~~~~~~-~~~v~~~~~s~~g~~-l~-~~~~~~v~~wd~~~~--~~~~~~~~~~~-~~~~~~~~  237 (268)
                      ++||+|+-+|+|.. +++.+++. ..+|.++.+++.-.. ++ ++.++.|++|++...  +.++.....-. ..+.+..+
T Consensus       349 tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~  428 (463)
T KOG0270|consen  349 TDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDP  428 (463)
T ss_pred             cCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCC
Confidence            99999999999975 88888874 467999999987543 33 457899999998543  33333333222 23444456


Q ss_pred             CCCCEEEeccCCCeEEEEECCCCcEE
Q 024372          238 KLGNIFIAGGEDMWVHVFDFHTGEQI  263 (268)
Q Consensus       238 ~~~~~~~~gs~d~~i~~wd~~~g~~~  263 (268)
                      ...-.++.||....+++||..++..+
T Consensus       429 ~~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  429 DVAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             CcceEEEecCccceEEEeecccChhH
Confidence            55678888999889999999877654

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=4.9e-25  Score=168.52  Aligned_cols=249  Identities=18%  Similarity=0.224  Sum_probs=185.5

Q ss_pred             eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCC---CeEEEeeCccCcEEEEEecC--CCcEEEEeeCCCcEEE
Q 024372           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG---DWIGTFEGHKGAVWSCCLDA--NALFSASGSADFTAKL   87 (268)
Q Consensus        13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~---~~~~~~~~h~~~V~~~~~~~--~~~~l~s~s~D~~v~i   87 (268)
                      .+|++.|.++...   --|..|||++.|++|+|+.++.+   +++.+|.||++||..++|..  -|.+|||++.||.|.|
T Consensus         8 t~H~D~IHda~lD---yygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIi   84 (299)
T KOG1332|consen    8 TQHEDMIHDAQLD---YYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVII   84 (299)
T ss_pred             hhhhhhhhHhhhh---hhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEE
Confidence            4788888855443   25899999999999999988764   57899999999999999964  6899999999999999


Q ss_pred             EeCCCCCeeeee---ccCCeEEEEEECC--CCCEEEEeeCCCeEEEEECCCC-C-CCCeEecCCcccEEEEEEeCCCC--
Q 024372           88 WDALTGDEKHSF---EHKHIVRACAFSE--DTHLLLTGGFEKILRIFDLNRP-D-APPREVGNSSGSIRTVAWLHSDQ--  158 (268)
Q Consensus        88 w~~~~~~~~~~~---~~~~~v~~v~~~~--~~~~l~s~~~d~~i~~~d~~~~-~-~~~~~~~~~~~~v~~~~~~~~~~--  158 (268)
                      |.-+++.=....   .|...|++++|-|  -|-+|++++.||.|.+++.+.. . ........|.-.+++++|.|..-  
T Consensus        85 Wke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g  164 (299)
T KOG1332|consen   85 WKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPG  164 (299)
T ss_pred             EecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCc
Confidence            998777422222   3778999999988  4679999999999999987654 1 12234456777899999987621  


Q ss_pred             -----------cEEEEeeCCCeEEEEeCCCCce--EEeecCC-CCEEEEEECCCC----cEEE-EeCCCeEEEEeCCCc-
Q 024372          159 -----------TILSSCTDSGGVRLWDARSGKI--VQTLETK-SPVTSAEVSRDG----RYIT-TADGSSVKFWDANHF-  218 (268)
Q Consensus       159 -----------~~~~~~~~d~~i~iwd~~~~~~--~~~~~~~-~~v~~~~~s~~g----~~l~-~~~~~~v~~wd~~~~-  218 (268)
                                 .-|++|+-|+.|+||+...++-  -+++..| ..|..+++.|.-    ..++ ++.|++|.||..+.. 
T Consensus       165 ~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~  244 (299)
T KOG1332|consen  165 SLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEY  244 (299)
T ss_pred             cccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCcc
Confidence                       2356666779999999987642  2345544 458999999964    2344 467999999987532 


Q ss_pred             ---eeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEECC-CCcEEee
Q 024372          219 ---GLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFH-TGEQIAI  265 (268)
Q Consensus       219 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~-~g~~~~~  265 (268)
                         +..-....+.....+.++. .|..|+.++.|..|.+|.-. .||-..+
T Consensus       245 e~wk~tll~~f~~~~w~vSWS~-sGn~LaVs~GdNkvtlwke~~~Gkw~~v  294 (299)
T KOG1332|consen  245 EPWKKTLLEEFPDVVWRVSWSL-SGNILAVSGGDNKVTLWKENVDGKWEEV  294 (299)
T ss_pred             CcccccccccCCcceEEEEEec-cccEEEEecCCcEEEEEEeCCCCcEEEc
Confidence               1111112445567788887 69999999999999999754 3554443

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.94  E-value=5.9e-25  Score=180.78  Aligned_cols=205  Identities=20%  Similarity=0.306  Sum_probs=168.3

Q ss_pred             EEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC-------eEEEeeCccCcEEEEEecCCC-cEEEEeeC
Q 024372           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD-------WIGTFEGHKGAVWSCCLDANA-LFSASGSA   81 (268)
Q Consensus        10 ~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~-------~~~~~~~h~~~V~~~~~~~~~-~~l~s~s~   81 (268)
                      +.|.||++.-.+|.|++..+  .+|++|+.|+++.+||+....       ....+.+|+..|..++|++.. ..+++++.
T Consensus       171 l~L~gH~~eg~glsWn~~~~--g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~d  248 (422)
T KOG0264|consen  171 LRLKGHEKEGYGLSWNRQQE--GTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGD  248 (422)
T ss_pred             eEEEeecccccccccccccc--eeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecC
Confidence            36779999888999998653  478999999999999987642       346789999999999999765 56799999


Q ss_pred             CCcEEEEeCCC--CCeeeee-ccCCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCC
Q 024372           82 DFTAKLWDALT--GDEKHSF-EHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSD  157 (268)
Q Consensus        82 D~~v~iw~~~~--~~~~~~~-~~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~  157 (268)
                      |+.+.|||+++  .++.... .|..+|.|++|+| ++.+||||+.|+++.+||++.-......+..|...|.+|.|+|..
T Consensus       249 d~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~  328 (422)
T KOG0264|consen  249 DGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHN  328 (422)
T ss_pred             CCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCC
Confidence            99999999985  3333332 4888999999999 778999999999999999987766677788899999999999999


Q ss_pred             CcEEEEeeCCCeEEEEeCCC-CceE-------------Eeec-CCCCEEEEEECCCCcEEEE--eCCCeEEEEeCC
Q 024372          158 QTILSSCTDSGGVRLWDARS-GKIV-------------QTLE-TKSPVTSAEVSRDGRYITT--ADGSSVKFWDAN  216 (268)
Q Consensus       158 ~~~~~~~~~d~~i~iwd~~~-~~~~-------------~~~~-~~~~v~~~~~s~~g~~l~~--~~~~~v~~wd~~  216 (268)
                      ..++++++.|+.+.+||+.. ++..             -+.. |...|....|+|+...+++  ++|+.+.||+.-
T Consensus       329 etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  329 ETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             CceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            99999999999999999964 2221             1122 2356999999999987665  468899999974

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.94  E-value=3.2e-24  Score=192.51  Aligned_cols=254  Identities=16%  Similarity=0.263  Sum_probs=191.6

Q ss_pred             eeecEEeeecCCCeeeEEEecCCCCCcEEEEEe--CCCCeEEeeCCC------------CCeEEEeeCccCcEEEEEecC
Q 024372            6 VAVPLVCHGHSRPVVDLFYSPITPDGFFLVSAS--KDSSPMLRNGET------------GDWIGTFEGHKGAVWSCCLDA   71 (268)
Q Consensus         6 ~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s--~d~~i~iw~~~~------------~~~~~~~~~h~~~V~~~~~~~   71 (268)
                      +.+|..+.-++..|.+++.+   |||..+|||+  .|+.++||+.+.            .+.+.+...|.+.|.++.|++
T Consensus         3 l~kp~wv~H~~~~IfSIdv~---pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~   79 (942)
T KOG0973|consen    3 LLKPTWVNHNEKSIFSIDVH---PDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSP   79 (942)
T ss_pred             eecccccccCCeeEEEEEec---CCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECC
Confidence            45666564345567788887   5999999999  999999997542            234667788999999999999


Q ss_pred             CCcEEEEeeCCCcEEEEeCCCC----------C--------eeeee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECC
Q 024372           72 NALFSASGSADFTAKLWDALTG----------D--------EKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLN  132 (268)
Q Consensus        72 ~~~~l~s~s~D~~v~iw~~~~~----------~--------~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~  132 (268)
                      ||++||+||.|+.|.+|+....          .        +...+ .|...|..++|+|++.+|++++.|+.|.+|+..
T Consensus        80 dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~  159 (942)
T KOG0973|consen   80 DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAK  159 (942)
T ss_pred             CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccc
Confidence            9999999999999999987630          0        12222 488889999999999999999999999999988


Q ss_pred             CCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecC-------CCCEEEEEECCCCcEEEEe
Q 024372          133 RPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-------KSPVTSAEVSRDGRYITTA  205 (268)
Q Consensus       133 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-------~~~v~~~~~s~~g~~l~~~  205 (268)
                      +. .....+..|.+.|..+.|.|-++ ++++-++|++|+||++.+-.+.+.+..       ..-...+.|||||.+|++.
T Consensus       160 tF-~~~~vl~~H~s~VKGvs~DP~Gk-y~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~  237 (942)
T KOG0973|consen  160 TF-ELLKVLRGHQSLVKGVSWDPIGK-YFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASP  237 (942)
T ss_pred             cc-eeeeeeecccccccceEECCccC-eeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecch
Confidence            76 45566678889999999999876 566667889999999877555554421       2347889999999999875


Q ss_pred             C-----CCeEEEEeCCCceeeeEEeCCCC-ceeeEEcCC-----C-------CC----EEEeccCCCeEEEEECCCCcEE
Q 024372          206 D-----GSSVKFWDANHFGLVKGYNMPCN-TESASLEPK-----L-------GN----IFIAGGEDMWVHVFDFHTGEQI  263 (268)
Q Consensus       206 ~-----~~~v~~wd~~~~~~~~~~~~~~~-~~~~~~~~~-----~-------~~----~~~~gs~d~~i~~wd~~~g~~~  263 (268)
                      .     ...+.|.+-++++.-..+-.|.. .....|.|.     .       +.    .+++||.|+.|.||....-.++
T Consensus       238 nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl  317 (942)
T KOG0973|consen  238 NAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPL  317 (942)
T ss_pred             hhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCch
Confidence            3     24677877777765555544433 333444321     0       11    5667999999999998665554


Q ss_pred             e
Q 024372          264 A  264 (268)
Q Consensus       264 ~  264 (268)
                      -
T Consensus       318 ~  318 (942)
T KOG0973|consen  318 F  318 (942)
T ss_pred             h
Confidence            3

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=2.8e-24  Score=177.13  Aligned_cols=228  Identities=22%  Similarity=0.349  Sum_probs=182.6

Q ss_pred             ecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCC
Q 024372           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG   93 (268)
Q Consensus        14 ~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~   93 (268)
                      +|.+.|.+++-+   +||.|||+|..|..++||+..+.+.++.|.+|.+.|.+++|-.....+.++|.|.++++|++...
T Consensus       200 ~h~keil~~avS---~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~  276 (479)
T KOG0299|consen  200 GHVKEILTLAVS---SDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL  276 (479)
T ss_pred             cccceeEEEEEc---CCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHh
Confidence            899999999988   49999999999999999999999999999999999999999877778899999999999999766


Q ss_pred             Ceee-eeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEE
Q 024372           94 DEKH-SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRL  172 (268)
Q Consensus        94 ~~~~-~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~i  172 (268)
                      ..+. .+.|++.|..+.-..-++++.+|+.|+++++|++....  .-.+..+.+.+-|++|..+. + +++|+++|.|-+
T Consensus       277 s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees--qlifrg~~~sidcv~~In~~-H-fvsGSdnG~IaL  352 (479)
T KOG0299|consen  277 SYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES--QLIFRGGEGSIDCVAFINDE-H-FVSGSDNGSIAL  352 (479)
T ss_pred             HHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccc--eeeeeCCCCCeeeEEEeccc-c-eeeccCCceEEE
Confidence            5444 45799999988877677777778899999999995432  23444567789999987643 4 557788899999


Q ss_pred             EeCCCCceEEeec--CC-----------CCEEEEEECCCCcEEEEeC-CCeEEEEeCCCc----eeeeEEeCCCCceeeE
Q 024372          173 WDARSGKIVQTLE--TK-----------SPVTSAEVSRDGRYITTAD-GSSVKFWDANHF----GLVKGYNMPCNTESAS  234 (268)
Q Consensus       173 wd~~~~~~~~~~~--~~-----------~~v~~~~~s~~g~~l~~~~-~~~v~~wd~~~~----~~~~~~~~~~~~~~~~  234 (268)
                      |++.+.+++.+..  |.           ..+++++..|...++++++ ++.||+|-+..+    .++..+....-+.+++
T Consensus       353 Ws~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~  432 (479)
T KOG0299|consen  353 WSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLA  432 (479)
T ss_pred             eeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEE
Confidence            9999888876543  11           1578999999999998764 799999987654    4455555555566777


Q ss_pred             EcCCCCCEEEec-cCC
Q 024372          235 LEPKLGNIFIAG-GED  249 (268)
Q Consensus       235 ~~~~~~~~~~~g-s~d  249 (268)
                      +++ +|+.+++| |..
T Consensus       433 f~~-sgk~ivagiGkE  447 (479)
T KOG0299|consen  433 FSN-SGKRIVAGIGKE  447 (479)
T ss_pred             Ecc-CCCEEEEecccc
Confidence            776 57755544 544

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.93  E-value=5.8e-24  Score=184.41  Aligned_cols=247  Identities=19%  Similarity=0.257  Sum_probs=199.1

Q ss_pred             EEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEe
Q 024372           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (268)
Q Consensus        10 ~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~   89 (268)
                      +.+.||...|++++|+.   |. .++..+..+.+++|+..+.++++++..-  -+.++.|-|.+.+++.|...|.+.++|
T Consensus       367 i~~~GHR~dVRsl~vS~---d~-~~~~Sga~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfd  440 (888)
T KOG0306|consen  367 IEIGGHRSDVRSLCVSS---DS-ILLASGAGESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFD  440 (888)
T ss_pred             eeeccchhheeEEEeec---Cc-eeeeecCCCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEE
Confidence            44569999999999984   44 4444556678999999999999999753  788889999999999999999999999


Q ss_pred             CCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCC----CCCCCe-------EecCCcccEEEEEEeCCC
Q 024372           90 ALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNR----PDAPPR-------EVGNSSGSIRTVAWLHSD  157 (268)
Q Consensus        90 ~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~----~~~~~~-------~~~~~~~~v~~~~~~~~~  157 (268)
                      +.......++. |...+..++.+||++-+++|+.|+++++||..-    +.....       ........+.|+.++|++
T Consensus       441 laS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdg  520 (888)
T KOG0306|consen  441 LASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDG  520 (888)
T ss_pred             eehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCC
Confidence            98887766654 889999999999999999999999999999631    111101       111234678999999987


Q ss_pred             CcEEEEeeCCCeEEEEeCCCCceEEee-cCCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCCCc-eeeE
Q 024372          158 QTILSSCTDSGGVRLWDARSGKIVQTL-ETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNT-ESAS  234 (268)
Q Consensus       158 ~~~~~~~~~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~~~-~~~~  234 (268)
                      .. ++.+--|+++++|=+.+.+-.-.+ .|.=||.|+.+|||++++++ +.|+.|++|-++-+.|.+.+..+... .++.
T Consensus       521 k~-LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~  599 (888)
T KOG0306|consen  521 KL-LAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQ  599 (888)
T ss_pred             cE-EEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEE
Confidence            65 555566799999999988765555 45568999999999999875 57999999999999999988877665 6677


Q ss_pred             EcCCCCCEEEeccCCCeEEEEECCCCcEEe
Q 024372          235 LEPKLGNIFIAGGEDMWVHVFDFHTGEQIA  264 (268)
Q Consensus       235 ~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~  264 (268)
                      +.| ...+|.++|.|+.|+-||...=+++.
T Consensus       600 F~P-~~~~FFt~gKD~kvKqWDg~kFe~iq  628 (888)
T KOG0306|consen  600 FLP-KTHLFFTCGKDGKVKQWDGEKFEEIQ  628 (888)
T ss_pred             Ecc-cceeEEEecCcceEEeechhhhhhhe
Confidence            777 68999999999999999875544443

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.93  E-value=3.5e-23  Score=159.75  Aligned_cols=241  Identities=17%  Similarity=0.231  Sum_probs=197.8

Q ss_pred             cceeeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCC
Q 024372            3 KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD   82 (268)
Q Consensus         3 ~~~~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D   82 (268)
                      +.++.+-....||.+.|-.++|+|..||  ++++++.|++|++||...++++.......+.+ .++|+|++.+++.++.|
T Consensus        51 ~~r~~~~~~~~gh~~svdql~w~~~~~d--~~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kd  127 (313)
T KOG1407|consen   51 RDRFRKELVYRGHTDSVDQLCWDPKHPD--LFATASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKD  127 (313)
T ss_pred             chhhhhhhcccCCCcchhhheeCCCCCc--ceEEecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCc
Confidence            3445556667899999999999997665  89999999999999999999998887655544 47899999999999999


Q ss_pred             CcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEE
Q 024372           83 FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILS  162 (268)
Q Consensus        83 ~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  162 (268)
                      -.|.+.|..+.+.....+.+..+.-++|+.++.+++.....|+|.+.....=+ +.+.+..|.....||.|.|++.+ ++
T Consensus       128 D~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLk-pv~si~AH~snCicI~f~p~Gry-fA  205 (313)
T KOG1407|consen  128 DRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLK-PVQSIKAHPSNCICIEFDPDGRY-FA  205 (313)
T ss_pred             ccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccc-cccccccCCcceEEEEECCCCce-Ee
Confidence            99999999998888888888888889999888888877778999998875322 33455567777888999988764 66


Q ss_pred             EeeCCCeEEEEeCCCCceEEeec-CCCCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCC
Q 024372          163 SCTDSGGVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLG  240 (268)
Q Consensus       163 ~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (268)
                      +|+.|-.+.+||+...-|++.+. ..-+|..+.||.||++|+++ +|..|-|=+++++..+...+.......++++|. .
T Consensus       206 ~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk-~  284 (313)
T KOG1407|consen  206 TGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPK-R  284 (313)
T ss_pred             eccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCCceeEEecCC-C
Confidence            77778999999999888888775 45679999999999999875 688899999999988877776667788899984 6


Q ss_pred             CEEEeccCC
Q 024372          241 NIFIAGGED  249 (268)
Q Consensus       241 ~~~~~gs~d  249 (268)
                      .+|+-++.|
T Consensus       285 ~LLAyA~dd  293 (313)
T KOG1407|consen  285 PLLAYACDD  293 (313)
T ss_pred             ceeeEEecC
Confidence            677766544

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.93  E-value=3.4e-22  Score=166.11  Aligned_cols=230  Identities=17%  Similarity=0.160  Sum_probs=169.1

Q ss_pred             cEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEE-EEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEEE
Q 024372           32 FFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFS-ASGSADFTAKLWDALTGDEKHSFEHKHIVRACAF  110 (268)
Q Consensus        32 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l-~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~  110 (268)
                      .++++++.|+.+.+||..+++.+..+.+|.. +..++|+|++..+ ++++.++.+++||..+++....+.....+..+.|
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~   80 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFAL   80 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEE
Confidence            4788999999999999999999998987654 6679999999866 6777899999999998887766654444567889


Q ss_pred             CCCCCEEEE-eeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCCC
Q 024372          111 SEDTHLLLT-GGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSP  189 (268)
Q Consensus       111 ~~~~~~l~s-~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~  189 (268)
                      +|+++.+++ +..++.+++||+.+... ...+. ....+..++++|++..++++..+...+.+||.++++.+..+.....
T Consensus        81 ~~~g~~l~~~~~~~~~l~~~d~~~~~~-~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  158 (300)
T TIGR03866        81 HPNGKILYIANEDDNLVTVIDIETRKV-LAEIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQR  158 (300)
T ss_pred             CCCCCEEEEEcCCCCeEEEEECCCCeE-EeEee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCC
Confidence            999987755 45689999999975432 22222 1224567899888776655544434678889998887766554445


Q ss_pred             EEEEEECCCCcEEE-Ee-CCCeEEEEeCCCceeeeEEeCCC--------CceeeEEcCCCCCE-EEeccCCCeEEEEECC
Q 024372          190 VTSAEVSRDGRYIT-TA-DGSSVKFWDANHFGLVKGYNMPC--------NTESASLEPKLGNI-FIAGGEDMWVHVFDFH  258 (268)
Q Consensus       190 v~~~~~s~~g~~l~-~~-~~~~v~~wd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~-~~~gs~d~~i~~wd~~  258 (268)
                      +..+.|+|+|++++ ++ .++.|++||+++.+.++.+....        ....+.+++ ++++ +++.+.+..|.+||.+
T Consensus       159 ~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~~~~~~~~~~~i~v~d~~  237 (300)
T TIGR03866       159 PRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTK-DGKTAFVALGPANRVAVVDAK  237 (300)
T ss_pred             ccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECC-CCCEEEEEcCCCCeEEEEECC
Confidence            67899999998774 44 47899999999887776654321        123455666 5665 4555666779999999


Q ss_pred             CCcEEee
Q 024372          259 TGEQIAI  265 (268)
Q Consensus       259 ~g~~~~~  265 (268)
                      +++.+..
T Consensus       238 ~~~~~~~  244 (300)
T TIGR03866       238 TYEVLDY  244 (300)
T ss_pred             CCcEEEE
Confidence            8887643

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=2.2e-23  Score=164.74  Aligned_cols=211  Identities=18%  Similarity=0.273  Sum_probs=164.7

Q ss_pred             CcceeeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeC
Q 024372            2 DKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSA   81 (268)
Q Consensus         2 ~~~~~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~   81 (268)
                      |.++--..-.+..|.+.|++|.|.+... -..|++|+.||.|.+|+...-+++.++++|+++|..++++|.+++.++.+.
T Consensus        69 Dm~k~~qlg~ll~HagsitaL~F~~~~S-~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~  147 (362)
T KOG0294|consen   69 DMRKRKQLGILLSHAGSITALKFYPPLS-KSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGG  147 (362)
T ss_pred             eccchhhhcceeccccceEEEEecCCcc-hhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcC
Confidence            3344334444567999999999987442 237999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEE
Q 024372           82 DFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTIL  161 (268)
Q Consensus        82 D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  161 (268)
                      |+.+++||+.++........+..-..+.|+|.|..++.++.+ .|-+|.++.... ..+.... ..+.|+.|..  +..+
T Consensus       148 D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v-~~~i~~~-~r~l~~~~l~--~~~L  222 (362)
T KOG0294|consen  148 DQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASV-FREIENP-KRILCATFLD--GSEL  222 (362)
T ss_pred             CceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEecc-EEEEEecccHhH-hhhhhcc-ccceeeeecC--CceE
Confidence            999999999999887776655555669999999988877764 578998875432 2222222 3466766643  3456


Q ss_pred             EEeeCCCeEEEEeCCCCceEEeec-CCCCEEEEEE--CCCCcEEEE-eCCCeEEEEeCCCc
Q 024372          162 SSCTDSGGVRLWDARSGKIVQTLE-TKSPVTSAEV--SRDGRYITT-ADGSSVKFWDANHF  218 (268)
Q Consensus       162 ~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~--s~~g~~l~~-~~~~~v~~wd~~~~  218 (268)
                      ++|.+++.|++||.....+...+. |..+|..+.+  .|++.+|++ ++||.|++||++..
T Consensus       223 ~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  223 LVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             EEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence            677788999999999988888776 4466888874  567778765 67999999998654

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.92  E-value=3.7e-23  Score=166.87  Aligned_cols=236  Identities=18%  Similarity=0.255  Sum_probs=182.1

Q ss_pred             ecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC----------------CCeEEEeeCccCcEEEEEecCCC-cEE
Q 024372           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET----------------GDWIGTFEGHKGAVWSCCLDANA-LFS   76 (268)
Q Consensus        14 ~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~----------------~~~~~~~~~h~~~V~~~~~~~~~-~~l   76 (268)
                      +|.+.++.+.-++.. +.-++|+-+..|.|+||+...                .+.+.++.+|+..=+.++|+|-. ..|
T Consensus       149 ~h~g~~NRvr~~~~~-~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L  227 (440)
T KOG0302|consen  149 PHYGGINRVRVSRLG-NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL  227 (440)
T ss_pred             ccccccceeeecccC-CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence            788899988887753 556899999999999998642                24678999999999999999843 236


Q ss_pred             EEeeCCCcEEEEeCCCCCe----eeeeccCCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCCC-eEecCCcccEEE
Q 024372           77 ASGSADFTAKLWDALTGDE----KHSFEHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPP-REVGNSSGSIRT  150 (268)
Q Consensus        77 ~s~s~D~~v~iw~~~~~~~----~~~~~~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~-~~~~~~~~~v~~  150 (268)
                      +||---+.|++|...++.=    .....|...|-.++|+| ...+|++|+-|+.|++||++.+.... .....|.+.|+-
T Consensus       228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNV  307 (440)
T KOG0302|consen  228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNV  307 (440)
T ss_pred             ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceee
Confidence            7777778899999887652    22334888999999999 45689999999999999998763332 344568889999


Q ss_pred             EEEeCCCCcEEEEeeCCCeEEEEeCCCC---ceEEeec-CCCCEEEEEECCCC--cEEEEeCCCeEEEEeCCC--c----
Q 024372          151 VAWLHSDQTILSSCTDSGGVRLWDARSG---KIVQTLE-TKSPVTSAEVSRDG--RYITTADGSSVKFWDANH--F----  218 (268)
Q Consensus       151 ~~~~~~~~~~~~~~~~d~~i~iwd~~~~---~~~~~~~-~~~~v~~~~~s~~g--~~l~~~~~~~v~~wd~~~--~----  218 (268)
                      |.|+..-+ ++++|++||+++|||+|+.   +++.+|+ |..+|.++.|+|..  .++++++|..|.+||+.-  .    
T Consensus       308 ISWnr~~~-lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~  386 (440)
T KOG0302|consen  308 ISWNRREP-LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEI  386 (440)
T ss_pred             EEccCCcc-eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhh
Confidence            99987665 8999999999999999864   5677776 56789999999965  455667899999999831  1    


Q ss_pred             ------e-------eeeEEeCCCCceeeEEcCCCCCEEEeccCCCe
Q 024372          219 ------G-------LVKGYNMPCNTESASLEPKLGNIFIAGGEDMW  251 (268)
Q Consensus       219 ------~-------~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~  251 (268)
                            .       ++..+..+.....+.|++....++++-+.||.
T Consensus       387 ~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf  432 (440)
T KOG0302|consen  387 DQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF  432 (440)
T ss_pred             ccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce
Confidence                  1       12222333445567788888889998888884

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=3.7e-25  Score=191.00  Aligned_cols=196  Identities=21%  Similarity=0.384  Sum_probs=170.6

Q ss_pred             EeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeC
Q 024372           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA   90 (268)
Q Consensus        11 ~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~   90 (268)
                      .|.+|+.+|-++.|++   +-.+|++|+++|+|++||++.++.+++|-||...+.++.|+|-+.|.|+|+.|..+++||.
T Consensus        65 S~~~hespIeSl~f~~---~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~  141 (825)
T KOG0267|consen   65 SLTGHESPIESLTFDT---SERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDI  141 (825)
T ss_pred             eeeccCCcceeeecCc---chhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhh
Confidence            3579999999999985   5679999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCe
Q 024372           91 LTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG  169 (268)
Q Consensus        91 ~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~  169 (268)
                      ....+.+.+. |...+.++.|+|+|+++++|+.|.++++||+..++ ...++..|.+.+..+.+. +...+++.|+.|++
T Consensus       142 Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk-~~~ef~~~e~~v~sle~h-p~e~Lla~Gs~d~t  219 (825)
T KOG0267|consen  142 RKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGK-LSKEFKSHEGKVQSLEFH-PLEVLLAPGSSDRT  219 (825)
T ss_pred             hccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccc-cccccccccccccccccC-chhhhhccCCCCce
Confidence            9777777765 77789999999999999999999999999997665 345666788889888854 45678888999999


Q ss_pred             EEEEeCCCCceEEeecC-CCCEEEEEECCCCcEEEEeCCCeEE
Q 024372          170 VRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTADGSSVK  211 (268)
Q Consensus       170 i~iwd~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~~~~~~v~  211 (268)
                      +++||+++.+.+...+. ...|.+.+|+|+++.+.++..-.++
T Consensus       220 v~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~sl~  262 (825)
T KOG0267|consen  220 VRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQISLS  262 (825)
T ss_pred             eeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhhhh
Confidence            99999999988876654 3569999999999998887644333

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=8.4e-22  Score=149.58  Aligned_cols=237  Identities=19%  Similarity=0.248  Sum_probs=181.4

Q ss_pred             ecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEe--eCCCCCeE---EEeeCccCcEEEEEecC----CCcEEEEee-CCC
Q 024372           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLR--NGETGDWI---GTFEGHKGAVWSCCLDA----NALFSASGS-ADF   83 (268)
Q Consensus        14 ~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw--~~~~~~~~---~~~~~h~~~V~~~~~~~----~~~~l~s~s-~D~   83 (268)
                      -|.+.|.+.+|+|   +|+++|+||+|++|++.  +.++...+   -+|+-|.+-|+.++|-.    .+.+|++++ .|.
T Consensus        87 hhkgsiyc~~ws~---~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc  163 (350)
T KOG0641|consen   87 HHKGSIYCTAWSP---CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDC  163 (350)
T ss_pred             ccCccEEEEEecC---ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcc
Confidence            4889999999985   99999999999999985  44443322   35778999999999953    356778765 688


Q ss_pred             cEEEEeCCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEec-------CCcccEEEEEEeC
Q 024372           84 TAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG-------NSSGSIRTVAWLH  155 (268)
Q Consensus        84 ~v~iw~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~-------~~~~~v~~~~~~~  155 (268)
                      .|++-|+.+++..+.+. |..-|..+ ++.++-++++|+.|++||.||++..... +...       .....|..++..|
T Consensus       164 ~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v-~~l~~~~~~~glessavaav~vdp  241 (350)
T KOG0641|consen  164 KIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCV-NTLDNDFHDGGLESSAVAAVAVDP  241 (350)
T ss_pred             eEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeecccee-eeccCcccCCCcccceeEEEEECC
Confidence            99999999999988875 76667655 5667889999999999999999754322 1111       1224678888777


Q ss_pred             CCCcEEEEeeCCCeEEEEeCCCCceEEeec-CCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCce--ee---eEEeCCC
Q 024372          156 SDQTILSSCTDSGGVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFG--LV---KGYNMPC  228 (268)
Q Consensus       156 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~--~~---~~~~~~~  228 (268)
                      .+ .++++|-.|...-+||+|-++.++.+. +...+.++-|+|...|+.+ +-|..|++=|++..-  .+   -.-.++.
T Consensus       242 sg-rll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkd  320 (350)
T KOG0641|consen  242 SG-RLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKD  320 (350)
T ss_pred             Cc-ceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccC
Confidence            65 578888888999999999999998875 5567999999999988765 569999999986421  11   1112334


Q ss_pred             CceeeEEcCCCCCEEEeccCCCeEEEEEC
Q 024372          229 NTESASLEPKLGNIFIAGGEDMWVHVFDF  257 (268)
Q Consensus       229 ~~~~~~~~~~~~~~~~~gs~d~~i~~wd~  257 (268)
                      ..+.+.|.|. .--|++.|.|+++-+|-.
T Consensus       321 k~i~~rwh~~-d~sfisssadkt~tlwa~  348 (350)
T KOG0641|consen  321 KAIQCRWHPQ-DFSFISSSADKTATLWAL  348 (350)
T ss_pred             ceEEEEecCc-cceeeeccCcceEEEecc
Confidence            4566777774 666889999999999964

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.5e-22  Score=179.08  Aligned_cols=239  Identities=16%  Similarity=0.236  Sum_probs=192.4

Q ss_pred             eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCC-CeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCC
Q 024372           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG-DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL   91 (268)
Q Consensus        13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~-~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~   91 (268)
                      .+|+.+-+.++|.|   +|..|.+++.|+.|++|+...- +.-.++.-|...|.+++..  +.+|++|+.+++|.++..-
T Consensus        10 yaht~G~t~i~~d~---~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fp   84 (933)
T KOG1274|consen   10 YAHTGGLTLICYDP---DGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFP   84 (933)
T ss_pred             hhccCceEEEEEcC---CCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCC
Confidence            47999999999985   8999999999999999976655 4444454477788777654  4588999999999999987


Q ss_pred             CCCeeeee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeE
Q 024372           92 TGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (268)
Q Consensus        92 ~~~~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i  170 (268)
                      .+..-..+ ...-++++++|+.+|+++|.|+.|-.|++-++.... .......|.++|.++.|+|.+. ++++++-||.|
T Consensus        85 s~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s-~~~~lrgh~apVl~l~~~p~~~-fLAvss~dG~v  162 (933)
T KOG1274|consen   85 SGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSS-QEKVLRGHDAPVLQLSYDPKGN-FLAVSSCDGKV  162 (933)
T ss_pred             CCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccc-hheeecccCCceeeeeEcCCCC-EEEEEecCceE
Confidence            77654333 345688999999999999999999999999987543 3445567899999999999875 55566667999


Q ss_pred             EEEeCCCCceEEeecC---------CCCEEEEEECCC-CcEEEEeCCCeEEEEeCCCceeeeEEeC---CCCceeeEEcC
Q 024372          171 RLWDARSGKIVQTLET---------KSPVTSAEVSRD-GRYITTADGSSVKFWDANHFGLVKGYNM---PCNTESASLEP  237 (268)
Q Consensus       171 ~iwd~~~~~~~~~~~~---------~~~v~~~~~s~~-g~~l~~~~~~~v~~wd~~~~~~~~~~~~---~~~~~~~~~~~  237 (268)
                      ++||+.++.+.+++..         ...+..++|+|+ |.+++.+.++.|++++...++....+..   .+....+.|+|
T Consensus       163 ~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsP  242 (933)
T KOG1274|consen  163 QIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSP  242 (933)
T ss_pred             EEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcC
Confidence            9999999988776643         123678899999 5677778899999999999887766643   33456677888


Q ss_pred             CCCCEEEeccCCCeEEEEECCC
Q 024372          238 KLGNIFIAGGEDMWVHVFDFHT  259 (268)
Q Consensus       238 ~~~~~~~~gs~d~~i~~wd~~~  259 (268)
                      . |.|+++++.|+.|.|||+++
T Consensus       243 n-G~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  243 N-GKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             C-CcEEeeeccCCcEEEEeccc
Confidence            4 99999999999999999986

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.92  E-value=3.1e-23  Score=168.28  Aligned_cols=224  Identities=22%  Similarity=0.343  Sum_probs=173.3

Q ss_pred             cEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCC-------CeEEEeeCccCcEEEEEecCCC-cEEEEee
Q 024372            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG-------DWIGTFEGHKGAVWSCCLDANA-LFSASGS   80 (268)
Q Consensus         9 ~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~-------~~~~~~~~h~~~V~~~~~~~~~-~~l~s~s   80 (268)
                      |++ .||+++|.+++|+|.  +-+.+|+||.|.+|.||.+-.+       +.+..|.||...|.-++|+|.- ..|+|++
T Consensus        75 P~v-~GHt~~vLDi~w~Pf--nD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag  151 (472)
T KOG0303|consen   75 PLV-CGHTAPVLDIDWCPF--NDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG  151 (472)
T ss_pred             CCc-cCccccccccccCcc--CCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhcc
Confidence            443 499999999999995  4479999999999999987654       4577889999999999999875 5788999


Q ss_pred             CCCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCccc-EEEEEEeCCCCc
Q 024372           81 ADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGS-IRTVAWLHSDQT  159 (268)
Q Consensus        81 ~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~  159 (268)
                      .|.+|.+||+.++....++.|+..|.+++|+.+|..+++++.|+.||+||.++++..... ..|.|. -..+.|..++. 
T Consensus       152 ~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~-~~heG~k~~Raifl~~g~-  229 (472)
T KOG0303|consen  152 SDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG-VAHEGAKPARAIFLASGK-  229 (472)
T ss_pred             CCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec-ccccCCCcceeEEeccCc-
Confidence            999999999999999889999999999999999999999999999999999887654333 344443 33455666655 


Q ss_pred             EEEEeeC---CCeEEEEeCCCCc---eEEeecCCCCEEEEEECCCCcEE-EEe-CCCeEEEEeCCCce----eeeEEeCC
Q 024372          160 ILSSCTD---SGGVRLWDARSGK---IVQTLETKSPVTSAEVSRDGRYI-TTA-DGSSVKFWDANHFG----LVKGYNMP  227 (268)
Q Consensus       160 ~~~~~~~---d~~i~iwd~~~~~---~~~~~~~~~~v~~~~~s~~g~~l-~~~-~~~~v~~wd~~~~~----~~~~~~~~  227 (268)
                      ++++|..   ++++-|||...-+   .++++.....|.--.+.||-+++ .+| .|+.||+|.+.+..    -+.+|...
T Consensus       230 i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~  309 (472)
T KOG0303|consen  230 IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSK  309 (472)
T ss_pred             eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccC
Confidence            7777743   3689999986643   35667777778888889998765 355 68899999987643    24455444


Q ss_pred             CCceeeEEcC
Q 024372          228 CNTESASLEP  237 (268)
Q Consensus       228 ~~~~~~~~~~  237 (268)
                      .......+.|
T Consensus       310 epQRG~g~mP  319 (472)
T KOG0303|consen  310 EPQRGMGFMP  319 (472)
T ss_pred             Cccccccccc
Confidence            3333333333

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=2e-22  Score=158.85  Aligned_cols=227  Identities=18%  Similarity=0.179  Sum_probs=171.7

Q ss_pred             eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCC
Q 024372           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT   92 (268)
Q Consensus        13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~   92 (268)
                      ..|..|+++++|.+    -..+++|+.|+.|+.+|+.+++-. .+..|..+|+++.+.+-...+++||+|++|++||...
T Consensus        51 ~~~~~plL~c~F~d----~~~~~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~  125 (323)
T KOG1036|consen   51 FKHGAPLLDCAFAD----ESTIVTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRN  125 (323)
T ss_pred             eecCCceeeeeccC----CceEEEeccCceEEEEEecCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccc
Confidence            47999999999984    357899999999999999988644 4667999999999998777889999999999999987


Q ss_pred             CCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCe-EecCCcccEEEEEEeCCCCcEEEEeeCCCeEE
Q 024372           93 GDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR-EVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR  171 (268)
Q Consensus        93 ~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~  171 (268)
                      ..+...+.....|.++..+  +..|+.|+.+..+.+||++.-....+ .....+-.+.|++..|.+.-+++++- ||.|-
T Consensus       126 ~~~~~~~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSi-eGRVa  202 (323)
T KOG1036|consen  126 KVVVGTFDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSI-EGRVA  202 (323)
T ss_pred             cccccccccCceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEee-cceEE
Confidence            6666677777788877654  66899999999999999986443221 22234557899999996666666654 58877


Q ss_pred             EEeCCCCce----EEeecCC----------CCEEEEEECCCCcEEE-EeCCCeEEEEeCCCceeeeEEeCCCC-ceeeEE
Q 024372          172 LWDARSGKI----VQTLETK----------SPVTSAEVSRDGRYIT-TADGSSVKFWDANHFGLVKGYNMPCN-TESASL  235 (268)
Q Consensus       172 iwd~~~~~~----~~~~~~~----------~~v~~~~~s~~g~~l~-~~~~~~v~~wd~~~~~~~~~~~~~~~-~~~~~~  235 (268)
                      +=.+...++    ...|+.|          .+|++++|+|-...++ +++||.|.+||+.+.+.++.+..-.. +.++++
T Consensus       203 vE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsf  282 (323)
T KOG1036|consen  203 VEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSF  282 (323)
T ss_pred             EEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEe
Confidence            744433321    1223221          3799999999855555 56799999999998887777765433 556666


Q ss_pred             cCCCCCEEEeccC
Q 024372          236 EPKLGNIFIAGGE  248 (268)
Q Consensus       236 ~~~~~~~~~~gs~  248 (268)
                      +. +|.+||+|+.
T Consensus       283 s~-dG~~LAia~s  294 (323)
T KOG1036|consen  283 SM-DGSLLAIASS  294 (323)
T ss_pred             cc-CCCeEEEEec
Confidence            65 7999998864

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.92  E-value=5.9e-23  Score=184.47  Aligned_cols=249  Identities=16%  Similarity=0.244  Sum_probs=186.9

Q ss_pred             eecEEe-eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC----------C--------CeEEEeeCccCcEEEE
Q 024372            7 AVPLVC-HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET----------G--------DWIGTFEGHKGAVWSC   67 (268)
Q Consensus         7 ~~~~~~-~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~----------~--------~~~~~~~~h~~~V~~~   67 (268)
                      ++.+.. ..|.+.|+++.|+|   ||++||+||.|+.|.||.-..          |        +.+..|++|.+.|..+
T Consensus        59 ~k~l~~m~~h~~sv~CVR~S~---dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv  135 (942)
T KOG0973|consen   59 PKHLCTMDDHDGSVNCVRFSP---DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDV  135 (942)
T ss_pred             chhheeeccccCceeEEEECC---CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCcccee
Confidence            344444 37999999999985   999999999999999997652          1        2577899999999999


Q ss_pred             EecCCCcEEEEeeCCCcEEEEeCCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecC---
Q 024372           68 CLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN---  143 (268)
Q Consensus        68 ~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~---  143 (268)
                      +|+|++.++||+|.|++|.+||..+......+. |...|..+.|.|-|++||+-+.|++|++|.+.+-.. ...+..   
T Consensus       136 ~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i-~k~It~pf~  214 (942)
T KOG0973|consen  136 NWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGI-EKSITKPFE  214 (942)
T ss_pred             ccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEccccee-eEeeccchh
Confidence            999999999999999999999999997777664 899999999999999999999999999999654211 111111   


Q ss_pred             ---CcccEEEEEEeCCCCcEEEEeeCC---CeEEEEeCCCCceEEe-ecCCCCEEEEEECC--------CC-------c-
Q 024372          144 ---SSGSIRTVAWLHSDQTILSSCTDS---GGVRLWDARSGKIVQT-LETKSPVTSAEVSR--------DG-------R-  200 (268)
Q Consensus       144 ---~~~~v~~~~~~~~~~~~~~~~~~d---~~i~iwd~~~~~~~~~-~~~~~~v~~~~~s~--------~g-------~-  200 (268)
                         -.....-+.|+|+|.++.+.-.-.   .++.|.+=.+=+.-.. +.|+.++.++.|+|        +|       . 
T Consensus       215 ~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y  294 (942)
T KOG0973|consen  215 ESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYY  294 (942)
T ss_pred             hCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcce
Confidence               112356789999998766543222   3677766544333333 35667899999986        11       1 


Q ss_pred             -EEEE-eCCCeEEEEeCCCceeeeEEe-C-CCCceeeEEcCCCCCEEEeccCCCeEEEEECCCC
Q 024372          201 -YITT-ADGSSVKFWDANHFGLVKGYN-M-PCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTG  260 (268)
Q Consensus       201 -~l~~-~~~~~v~~wd~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g  260 (268)
                       .+++ +.|+.|.+|.....+++-... . ...+...+|++ +|..|.++|.||.|.+..+...
T Consensus       295 ~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  295 CIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSP-DGFSLFACSLDGTVALIHFEEK  357 (942)
T ss_pred             EEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcC-CCCeEEEEecCCeEEEEEcchH
Confidence             2333 469999999986555543222 1 23456778887 6999999999999999999743

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=6.5e-23  Score=162.18  Aligned_cols=241  Identities=15%  Similarity=0.223  Sum_probs=179.9

Q ss_pred             eeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeee
Q 024372           19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHS   98 (268)
Q Consensus        19 v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~   98 (268)
                      -.++.|++   -|.+||.|..||.+.|||..+...-+.|.+|..+|.+++|+++|++|+|+|+|..+++||+..+.+.+.
T Consensus        26 a~~~~Fs~---~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~r  102 (405)
T KOG1273|consen   26 AECCQFSR---WGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKR  102 (405)
T ss_pred             cceEEecc---CcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeE
Confidence            55899985   799999999999999999999887788999999999999999999999999999999999999999999


Q ss_pred             eccCCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCCCeEecC-Cccc----EEEEEEeCCCCcEEEEeeCCCeEEE
Q 024372           99 FEHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGN-SSGS----IRTVAWLHSDQTILSSCTDSGGVRL  172 (268)
Q Consensus        99 ~~~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~-~~~~----v~~~~~~~~~~~~~~~~~~d~~i~i  172 (268)
                      +....+|..+.|+| +.+.+++.-.+..-.+-++..+..  ..... ..+.    -.+..|.+. +.++.+|...|.+.+
T Consensus       103 irf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h--~~Lp~d~d~dln~sas~~~fdr~-g~yIitGtsKGkllv  179 (405)
T KOG1273|consen  103 IRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH--SVLPKDDDGDLNSSASHGVFDRR-GKYIITGTSKGKLLV  179 (405)
T ss_pred             EEccCccceeeeccccCCeEEEEEecCCcEEEEecCCce--eeccCCCccccccccccccccCC-CCEEEEecCcceEEE
Confidence            99999999999999 344444444444444555433211  11110 0111    112234444 455667777799999


Q ss_pred             EeCCCCceEEeecCC--CCEEEEEECCCCcEEEE-eCCCeEEEEeCCCc-------eeeeEEeC-----CCCceeeEEcC
Q 024372          173 WDARSGKIVQTLETK--SPVTSAEVSRDGRYITT-ADGSSVKFWDANHF-------GLVKGYNM-----PCNTESASLEP  237 (268)
Q Consensus       173 wd~~~~~~~~~~~~~--~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~-------~~~~~~~~-----~~~~~~~~~~~  237 (268)
                      +|..+.+++..+...  ..+..+.++..|++++. .+|+.||.++++.-       +....+..     +.....++++.
T Consensus       180 ~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~  259 (405)
T KOG1273|consen  180 YDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSG  259 (405)
T ss_pred             EecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecC
Confidence            999999999887643  46899999999999876 57899999997521       11111111     12234566666


Q ss_pred             CCCCEEEeccC-CCeEEEEECCCCcEEeec
Q 024372          238 KLGNIFIAGGE-DMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       238 ~~~~~~~~gs~-d~~i~~wd~~~g~~~~~~  266 (268)
                       +|.++++|+. --.+|+|+-..|.++.+.
T Consensus       260 -dgeYv~a~s~~aHaLYIWE~~~GsLVKIL  288 (405)
T KOG1273|consen  260 -DGEYVCAGSARAHALYIWEKSIGSLVKIL  288 (405)
T ss_pred             -CccEEEeccccceeEEEEecCCcceeeee
Confidence             7999888874 457999999999988874

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=9e-24  Score=180.62  Aligned_cols=243  Identities=21%  Similarity=0.230  Sum_probs=188.4

Q ss_pred             EEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCC--CeEEEeeCccCcEEEEEe-cCCCcEEEEeeCCCcEE
Q 024372           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG--DWIGTFEGHKGAVWSCCL-DANALFSASGSADFTAK   86 (268)
Q Consensus        10 ~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~--~~~~~~~~h~~~V~~~~~-~~~~~~l~s~s~D~~v~   86 (268)
                      ..++.|+.=|+++...   .+|+.|+++|.|-+|++|+.+.+  -++.+++.|++=|.++++ .++...+||||-|+.|.
T Consensus        67 asme~HsDWVNDiiL~---~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~If  143 (735)
T KOG0308|consen   67 ASMEHHSDWVNDIILC---GNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIF  143 (735)
T ss_pred             hhhhhhHhHHhhHHhh---cCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEE
Confidence            3456788888888776   47889999999999999999987  578899999999999999 77888899999999999


Q ss_pred             EEeCCCCCe--eeee----------ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEe
Q 024372           87 LWDALTGDE--KHSF----------EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWL  154 (268)
Q Consensus        87 iw~~~~~~~--~~~~----------~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~  154 (268)
                      +||++++..  +..+          .+...|.+++.++.+..+++|+..+.+++||.++.+.... +.+|..-|..+..+
T Consensus       144 lWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimk-LrGHTdNVr~ll~~  222 (735)
T KOG0308|consen  144 LWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMK-LRGHTDNVRVLLVN  222 (735)
T ss_pred             EEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceee-eeccccceEEEEEc
Confidence            999987732  2222          3567899999999999999999999999999987654433 44788899999988


Q ss_pred             CCCCcEEEEeeCCCeEEEEeCCCCceEEeecCC-CCEEEEEECCCCcEEEEe-CCCeEEEEeCCCc-eeeeEEeCCCCce
Q 024372          155 HSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITTA-DGSSVKFWDANHF-GLVKGYNMPCNTE  231 (268)
Q Consensus       155 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~-~~~~~~~~~~~~~  231 (268)
                      +++..++++ +.||+|++||+...+|+.++..| ..|-++..+|+-..+.+| .|+.|..=|++++ ++...+.-..+..
T Consensus       223 dDGt~~ls~-sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~  301 (735)
T KOG0308|consen  223 DDGTRLLSA-SSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVL  301 (735)
T ss_pred             CCCCeEeec-CCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchh
Confidence            877666655 55699999999999999998744 458899999998877654 6888998899885 3333333222333


Q ss_pred             eeEEcCCCCCEEEeccCCCeEEEEECC
Q 024372          232 SASLEPKLGNIFIAGGEDMWVHVFDFH  258 (268)
Q Consensus       232 ~~~~~~~~~~~~~~gs~d~~i~~wd~~  258 (268)
                      .....- ...-+-++..|+.|+-|...
T Consensus       302 ~l~~~~-~~~~~WvtTtds~I~rW~~~  327 (735)
T KOG0308|consen  302 KLHLHE-HDNSVWVTTTDSSIKRWKLE  327 (735)
T ss_pred             hhhhcc-ccCCceeeeccccceecCCc
Confidence            333332 23334778888889999653

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=1.3e-24  Score=187.68  Aligned_cols=231  Identities=20%  Similarity=0.310  Sum_probs=190.2

Q ss_pred             ecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCC
Q 024372           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG   93 (268)
Q Consensus        14 ~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~   93 (268)
                      .|..-|.++...   ..+..+++|+.|..+-+|...+--.+-.|.+|+.+|.++.|+....+++.|+.+|+||+||++++
T Consensus        26 ~hsaav~~lk~~---~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeA  102 (825)
T KOG0267|consen   26 AHSAAVGCLKIR---KSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEA  102 (825)
T ss_pred             hhhhhhceeeee---ccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhh
Confidence            577777777763   35678999999999999988777666678999999999999999999999999999999999999


Q ss_pred             Ceeeee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEE
Q 024372           94 DEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRL  172 (268)
Q Consensus        94 ~~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~i  172 (268)
                      +.++++ .|...+..+.|+|-+.++++|+.|..+++||.+...... ....|...+..+.|.|+|.+ ++.+++|++++|
T Consensus       103 k~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~-~~~s~~~vv~~l~lsP~Gr~-v~~g~ed~tvki  180 (825)
T KOG0267|consen  103 KIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSH-TYKSHTRVVDVLRLSPDGRW-VASGGEDNTVKI  180 (825)
T ss_pred             hhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCcee-eecCCcceeEEEeecCCCce-eeccCCcceeee
Confidence            887776 488889999999999999999999999999987544433 33447788999999987765 556677899999


Q ss_pred             EeCCCCceEEeec-CCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeC-CCCceeeEEcCCCCCEEEeccCC
Q 024372          173 WDARSGKIVQTLE-TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNM-PCNTESASLEPKLGNIFIAGGED  249 (268)
Q Consensus       173 wd~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gs~d  249 (268)
                      ||+..|+.+..|+ +.+.+..+.++|..-+++. +.|++|++||+++++.+..-.. ..++.+..|.+ ++..+.+|-..
T Consensus       181 ~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~-~~~~~~~G~q~  259 (825)
T KOG0267|consen  181 WDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNP-DGKIVLSGEQI  259 (825)
T ss_pred             ecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecC-CceeeecCchh
Confidence            9999999999998 5577999999999877775 4689999999998877654432 34556666666 68877777654


Q ss_pred             C
Q 024372          250 M  250 (268)
Q Consensus       250 ~  250 (268)
                      .
T Consensus       260 s  260 (825)
T KOG0267|consen  260 S  260 (825)
T ss_pred             h
Confidence            3

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.91  E-value=3.9e-23  Score=166.79  Aligned_cols=170  Identities=23%  Similarity=0.381  Sum_probs=143.0

Q ss_pred             eeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeE---EEeeCccCcEEEEEecCCC-cEEEEeeC
Q 024372            6 VAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWI---GTFEGHKGAVWSCCLDANA-LFSASGSA   81 (268)
Q Consensus         6 ~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~---~~~~~h~~~V~~~~~~~~~-~~l~s~s~   81 (268)
                      +.....+.+|...=.+|+|+|.. .| .|++|---+.|++|...+|.+.   ..|.+|+..|-.++|+|.. ..|+|||.
T Consensus       201 ~~Pl~t~~ghk~EGy~LdWSp~~-~g-~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~  278 (440)
T KOG0302|consen  201 FRPLFTFNGHKGEGYGLDWSPIK-TG-RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSC  278 (440)
T ss_pred             cCceEEecccCccceeeeccccc-cc-ccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeec
Confidence            34445556899999999999954 55 4778888889999999998764   4567899999999999976 57899999


Q ss_pred             CCcEEEEeCCCCC---eeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCC--CCCCeEecCCcccEEEEEEeCC
Q 024372           82 DFTAKLWDALTGD---EKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRP--DAPPREVGNSSGSIRTVAWLHS  156 (268)
Q Consensus        82 D~~v~iw~~~~~~---~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~--~~~~~~~~~~~~~v~~~~~~~~  156 (268)
                      ||+|+|||++.++   ++.+-.|..-|+.++|+..-.+||+|+.||++++||++.-  ..+...+..|+.+|+++.|.|.
T Consensus       279 DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~  358 (440)
T KOG0302|consen  279 DGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPH  358 (440)
T ss_pred             CceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccc
Confidence            9999999999884   3444568889999999998889999999999999999753  2345677789999999999998


Q ss_pred             CCcEEEEeeCCCeEEEEeCCC
Q 024372          157 DQTILSSCTDSGGVRLWDARS  177 (268)
Q Consensus       157 ~~~~~~~~~~d~~i~iwd~~~  177 (268)
                      ....+++++.|++|.|||+..
T Consensus       359 e~s~iaasg~D~QitiWDlsv  379 (440)
T KOG0302|consen  359 EDSVIAASGEDNQITIWDLSV  379 (440)
T ss_pred             cCceEEeccCCCcEEEEEeec
Confidence            888888888899999999864

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=3.6e-22  Score=170.74  Aligned_cols=232  Identities=16%  Similarity=0.209  Sum_probs=190.1

Q ss_pred             CcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeec--cCCeEEEE
Q 024372           31 GFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE--HKHIVRAC  108 (268)
Q Consensus        31 g~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~--~~~~v~~v  108 (268)
                      .+.||.| ....+.+|+..+++......-+++.|.++.|+++|.+||.|-.+|.|.|||..+.+..+.+.  |...|.++
T Consensus       188 ~n~laVa-lg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~l  266 (484)
T KOG0305|consen  188 ANVLAVA-LGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSL  266 (484)
T ss_pred             CCeEEEE-ecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEE
Confidence            4456544 45677899999998665555568999999999999999999999999999999888777764  67789999


Q ss_pred             EECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEee-cCC
Q 024372          109 AFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL-ETK  187 (268)
Q Consensus       109 ~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~-~~~  187 (268)
                      +|+  ...+.+|+.++.|..+|++..........+|...|..+.|++++. .+++|+.|+.+.|||....+++.++ +|.
T Consensus       267 aW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~-~lASGgnDN~~~Iwd~~~~~p~~~~~~H~  343 (484)
T KOG0305|consen  267 AWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGN-QLASGGNDNVVFIWDGLSPEPKFTFTEHT  343 (484)
T ss_pred             ecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCC-eeccCCCccceEeccCCCccccEEEeccc
Confidence            998  668999999999999999876654444567888999999998764 6777778899999999777776665 567


Q ss_pred             CCEEEEEECCCC-cEEEEe---CCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEecc-CCCeEEEEECCCCcE
Q 024372          188 SPVTSAEVSRDG-RYITTA---DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGG-EDMWVHVFDFHTGEQ  262 (268)
Q Consensus       188 ~~v~~~~~s~~g-~~l~~~---~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs-~d~~i~~wd~~~g~~  262 (268)
                      +.|..++|+|-. .+|++|   .|+.|++||..++..+........+.++.+.+...+++.+-| .+..|.||+..+.++
T Consensus       344 aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~  423 (484)
T KOG0305|consen  344 AAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKL  423 (484)
T ss_pred             eeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccce
Confidence            789999999964 456654   478999999999999988888888899999997777777744 567899999987776


Q ss_pred             Eeec
Q 024372          263 IAIT  266 (268)
Q Consensus       263 ~~~~  266 (268)
                      +..+
T Consensus       424 ~~~l  427 (484)
T KOG0305|consen  424 VAEL  427 (484)
T ss_pred             eeee
Confidence            6654

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=4.2e-23  Score=169.57  Aligned_cols=207  Identities=18%  Similarity=0.201  Sum_probs=166.7

Q ss_pred             eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCC-cEEEEeeCCCcEEEEeCC
Q 024372           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA-LFSASGSADFTAKLWDAL   91 (268)
Q Consensus        13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~-~~l~s~s~D~~v~iw~~~   91 (268)
                      .+|+..|.++.|+-.  -.+.||+||.|.+|++||+.+|++..++..|.++|.+++|.|.. .+|++||.|++|++.|++
T Consensus       240 ~gHTdavl~Ls~n~~--~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R  317 (463)
T KOG0270|consen  240 SGHTDAVLALSWNRN--FRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCR  317 (463)
T ss_pred             ccchHHHHHHHhccc--cceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeecc
Confidence            479999999999753  46799999999999999999999999999999999999999765 788999999999999998


Q ss_pred             C-CCeeeeeccCCeEEEEEECCC-CCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCe
Q 024372           92 T-GDEKHSFEHKHIVRACAFSED-THLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG  169 (268)
Q Consensus        92 ~-~~~~~~~~~~~~v~~v~~~~~-~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~  169 (268)
                      . ...-..+.....|-.+.|+|. ...++++..||+++.+|++......-....|.++|.+++++...+.++++++.|+.
T Consensus       318 ~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~  397 (463)
T KOG0270|consen  318 DPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKV  397 (463)
T ss_pred             CccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccce
Confidence            4 233445566778889999984 45777888999999999998766666777899999999999999999999999999


Q ss_pred             EEEEeCCCCceEEeecC---CCCEEEEEECCCCcEE--EEeCCCeEEEEeCCCceee
Q 024372          170 VRLWDARSGKIVQTLET---KSPVTSAEVSRDGRYI--TTADGSSVKFWDANHFGLV  221 (268)
Q Consensus       170 i~iwd~~~~~~~~~~~~---~~~v~~~~~s~~g~~l--~~~~~~~v~~wd~~~~~~~  221 (268)
                      |++|++.--+......+   -+...|.++.|+--++  +++..+.+++||+-+...+
T Consensus       398 Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  398 VKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             EEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence            99999865443222211   1335677777875443  3455667999998765443

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.91  E-value=3.1e-23  Score=166.57  Aligned_cols=247  Identities=13%  Similarity=0.179  Sum_probs=188.9

Q ss_pred             ecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEE
Q 024372            8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKL   87 (268)
Q Consensus         8 ~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~i   87 (268)
                      ....+..|.+.|.+|++..     .-+++++.|++++.|...- ..++++-+ +..+..+.-+..+..+||+|.  .|-|
T Consensus       101 ~~~~f~AH~G~V~Gi~v~~-----~~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~I  171 (433)
T KOG0268|consen  101 CIRTFKAHEGLVRGICVTQ-----TSFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDI  171 (433)
T ss_pred             hhheeecccCceeeEEecc-----cceEEecCCcceeeeeccC-Ccceeeec-cccccccccccccccccccCc--eeee
Confidence            3456678999999999963     4678999999999997653 46666654 345666666666777899876  6899


Q ss_pred             EeCCCCCeeeeecc-CCeEEEEEECCCC-CEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEee
Q 024372           88 WDALTGDEKHSFEH-KHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT  165 (268)
Q Consensus        88 w~~~~~~~~~~~~~-~~~v~~v~~~~~~-~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  165 (268)
                      ||.+...++..+.- ...|.++.|+|-. .+|+++..|+.|.+||++....+.....  ....+.|+|+| ....++++.
T Consensus       172 WD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~--~mRTN~IswnP-eafnF~~a~  248 (433)
T KOG0268|consen  172 WDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL--TMRTNTICWNP-EAFNFVAAN  248 (433)
T ss_pred             cccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee--eccccceecCc-cccceeecc
Confidence            99998888888774 3568999999954 5777888999999999987654433332  23567899999 556677788


Q ss_pred             CCCeEEEEeCCCC-ceEEeecCC-CCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCC--CceeeEEcCCCC
Q 024372          166 DSGGVRLWDARSG-KIVQTLETK-SPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPC--NTESASLEPKLG  240 (268)
Q Consensus       166 ~d~~i~iwd~~~~-~~~~~~~~~-~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~--~~~~~~~~~~~~  240 (268)
                      +|..+..+|.|.. +.+..+..+ ..|.+++|||.|+-+++ +-|.+||||..+.+.--..|..+.  .+.++-++. +.
T Consensus       249 ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~-Ds  327 (433)
T KOG0268|consen  249 EDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSM-DS  327 (433)
T ss_pred             ccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEec-cc
Confidence            9999999999874 455555544 56999999999987665 569999999998765544554432  344555565 68


Q ss_pred             CEEEeccCCCeEEEEECCCCcEEeecc
Q 024372          241 NIFIAGGEDMWVHVFDFHTGEQIAITS  267 (268)
Q Consensus       241 ~~~~~gs~d~~i~~wd~~~g~~~~~~~  267 (268)
                      +++++||.|+.|++|..+..+++.+.|
T Consensus       328 kyi~SGSdd~nvRlWka~Aseklgv~t  354 (433)
T KOG0268|consen  328 KYIISGSDDGNVRLWKAKASEKLGVIT  354 (433)
T ss_pred             cEEEecCCCcceeeeecchhhhcCCCC
Confidence            999999999999999998888777654

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=6.6e-23  Score=156.92  Aligned_cols=204  Identities=23%  Similarity=0.367  Sum_probs=160.6

Q ss_pred             EeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeE--EEeeCccCcEEEEEecCCC--cEEEEeeCCCcEE
Q 024372           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWI--GTFEGHKGAVWSCCLDANA--LFSASGSADFTAK   86 (268)
Q Consensus        11 ~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~--~~~~~h~~~V~~~~~~~~~--~~l~s~s~D~~v~   86 (268)
                      .|.||++||..++|... .-|..||+++.||+++||.-+.|++.  .....|++.|.+++|.|.+  ..|+.++.||.|.
T Consensus        51 ~L~Gh~GPVwqv~wahP-k~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vs  129 (299)
T KOG1332|consen   51 ELTGHSGPVWKVAWAHP-KFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVS  129 (299)
T ss_pred             EecCCCCCeeEEeeccc-ccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEE
Confidence            45699999999999432 47899999999999999998888653  4556899999999999875  5789999999999


Q ss_pred             EEeCCCCC----eeeeeccCCeEEEEEECCC---C-----------CEEEEeeCCCeEEEEECCCCCCCC-eEecCCccc
Q 024372           87 LWDALTGD----EKHSFEHKHIVRACAFSED---T-----------HLLLTGGFEKILRIFDLNRPDAPP-REVGNSSGS  147 (268)
Q Consensus        87 iw~~~~~~----~~~~~~~~~~v~~v~~~~~---~-----------~~l~s~~~d~~i~~~d~~~~~~~~-~~~~~~~~~  147 (268)
                      |.++....    .+....|.-.|++++|.|-   |           +.|++|+-|+.+++|+...+.-.. ..+..|.+.
T Consensus       130 vl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dw  209 (299)
T KOG1332|consen  130 VLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDW  209 (299)
T ss_pred             EEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchh
Confidence            99886542    1223347778999999885   4           679999999999999987653332 336678999


Q ss_pred             EEEEEEeCCCC---cEEEEeeCCCeEEEEeCCCC-c-eEEeecC--CCCEEEEEECCCCcEEEEe-CCCeEEEEeC
Q 024372          148 IRTVAWLHSDQ---TILSSCTDSGGVRLWDARSG-K-IVQTLET--KSPVTSAEVSRDGRYITTA-DGSSVKFWDA  215 (268)
Q Consensus       148 v~~~~~~~~~~---~~~~~~~~d~~i~iwd~~~~-~-~~~~~~~--~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~  215 (268)
                      |+.++|.|..+   ..+++|+.||++.||..+.. + -..++..  ...+..+.||+.|++|+.+ .|..|.+|.-
T Consensus       210 VRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke  285 (299)
T KOG1332|consen  210 VRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE  285 (299)
T ss_pred             hhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence            99999998764   47899999999999987632 1 1222222  3458999999999999754 6789999974

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.90  E-value=3.4e-21  Score=149.36  Aligned_cols=206  Identities=20%  Similarity=0.296  Sum_probs=166.7

Q ss_pred             eeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCC
Q 024372           57 FEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPD  135 (268)
Q Consensus        57 ~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~  135 (268)
                      +.||+.++..+.|..+|.+|.|++.|.++.+|-..+++.+-++. |...|.++..+.+.+.+++|+.|.++++||+++++
T Consensus         6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk   85 (327)
T KOG0643|consen    6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGK   85 (327)
T ss_pred             cccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCc
Confidence            67999999999999999999999999999999998888888875 99999999999999999999999999999999876


Q ss_pred             CCCeEecCCcccEEEEEEeCCCCcEEEEeeCC-----CeEEEEeCC-------CCceEEeec-CCCCEEEEEECCCCcEE
Q 024372          136 APPREVGNSSGSIRTVAWLHSDQTILSSCTDS-----GGVRLWDAR-------SGKIVQTLE-TKSPVTSAEVSRDGRYI  202 (268)
Q Consensus       136 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d-----~~i~iwd~~-------~~~~~~~~~-~~~~v~~~~~s~~g~~l  202 (268)
                      .+....  ...+|..+.|+..+ ++++.++++     +.|.++|++       ..+++..+. ....+..+.|.|-+.++
T Consensus        86 ~la~~k--~~~~Vk~~~F~~~g-n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i  162 (327)
T KOG0643|consen   86 QLATWK--TNSPVKRVDFSFGG-NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI  162 (327)
T ss_pred             EEEEee--cCCeeEEEeeccCC-cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence            543332  34578889988755 555555554     579999998       445555554 44668999999999998


Q ss_pred             EEe-CCCeEEEEeCCCc-eeeeEEeCC-CCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEeec
Q 024372          203 TTA-DGSSVKFWDANHF-GLVKGYNMP-CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       203 ~~~-~~~~v~~wd~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~~  266 (268)
                      +++ +++.|..||++++ +.++.-..+ ..+..+.+++ +..+|++||.|.+.++||+.+=+.+..|
T Consensus       163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~-d~T~FiT~s~Dttakl~D~~tl~v~Kty  228 (327)
T KOG0643|consen  163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSR-DRTYFITGSKDTTAKLVDVRTLEVLKTY  228 (327)
T ss_pred             EEecCCCcEEEEEcccCceeeechhhhccccccccccC-CcceEEecccCccceeeeccceeeEEEe
Confidence            775 6899999999986 444443332 3455666676 6999999999999999999877666654

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.90  E-value=7.3e-22  Score=168.72  Aligned_cols=238  Identities=18%  Similarity=0.270  Sum_probs=173.7

Q ss_pred             eEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCe------EEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCC
Q 024372           21 DLFYSPITPDGFFLVSASKDSSPMLRNGETGDW------IGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD   94 (268)
Q Consensus        21 ~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~------~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~   94 (268)
                      +..|++-....+.|+.+-.||.|.++|......      +..+..|.+.|..+.|.|....|++++.|.++++||+++..
T Consensus        54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~  133 (720)
T KOG0321|consen   54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSR  133 (720)
T ss_pred             cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccce
Confidence            478877666788999999999999999876532      35667899999999999977889999999999999999888


Q ss_pred             eeee---eccCCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCCC-----------------------eEe---cCC
Q 024372           95 EKHS---FEHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPP-----------------------REV---GNS  144 (268)
Q Consensus        95 ~~~~---~~~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~-----------------------~~~---~~~  144 (268)
                      +...   +.|...|.+++|+| +...|++|+.|+.|.+||++......                       +..   ..+
T Consensus       134 l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~  213 (720)
T KOG0321|consen  134 LVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAA  213 (720)
T ss_pred             eecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccc
Confidence            6554   57999999999999 66789999999999999986422000                       000   011


Q ss_pred             cccEEE---EEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeec--------C----CCCEEEEEECCCCcEEE-EeCCC
Q 024372          145 SGSIRT---VAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE--------T----KSPVTSAEVSRDGRYIT-TADGS  208 (268)
Q Consensus       145 ~~~v~~---~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~--------~----~~~v~~~~~s~~g~~l~-~~~~~  208 (268)
                      ...+..   +.++.+...++++|..|+.||+||+|+..+....+        .    ...+.++.....|.++. +..|+
T Consensus       214 s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~  293 (720)
T KOG0321|consen  214 SNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDN  293 (720)
T ss_pred             cCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCC
Confidence            122333   44556666666666658999999999876543221        1    12466788888888765 45799


Q ss_pred             eEEEEeCCCce--eeeEEeCCCC---ceeeEEcCCCCCEEEeccCCCeEEEEECCC
Q 024372          209 SVKFWDANHFG--LVKGYNMPCN---TESASLEPKLGNIFIAGGEDMWVHVFDFHT  259 (268)
Q Consensus       209 ~v~~wd~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~  259 (268)
                      .|.+|++....  ++..|..+..   ......++ ++.++++|+.|...++|.+.+
T Consensus       294 sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSp-d~~~l~SgSsd~~ayiw~vs~  348 (720)
T KOG0321|consen  294 SIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSP-DDCSLLSGSSDEQAYIWVVSS  348 (720)
T ss_pred             cEEEEeccccCcCchhhccCcccceeeeeeecCC-CCceEeccCCCcceeeeeecC
Confidence            99999997653  3333433221   22334445 799999999999999999864

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=5.6e-23  Score=185.48  Aligned_cols=243  Identities=20%  Similarity=0.287  Sum_probs=179.1

Q ss_pred             eEEEecCCCCCcEEEEE----------eCCCCeEEeeC--CCCC----eEEEeeCccCcEEEEEecCCCcE----EEEee
Q 024372           21 DLFYSPITPDGFFLVSA----------SKDSSPMLRNG--ETGD----WIGTFEGHKGAVWSCCLDANALF----SASGS   80 (268)
Q Consensus        21 ~~~f~~~~~dg~~l~s~----------s~d~~i~iw~~--~~~~----~~~~~~~h~~~V~~~~~~~~~~~----l~s~s   80 (268)
                      .++|+|..+  .+||+|          +.+.++-+|.+  .+.+    .+..+. -..+-+.++|.+.+..    +|.|.
T Consensus        11 ~~awSp~~~--~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~   87 (1049)
T KOG0307|consen   11 TFAWSPASP--PLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGL   87 (1049)
T ss_pred             eEEecCCCc--hhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccc
Confidence            456776332  255555          44555555533  2222    333332 2345677888877655    88999


Q ss_pred             CCCcEEEEeCCCC---Ce---eee-eccCCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCCCeE-ecCCcccEEEE
Q 024372           81 ADFTAKLWDALTG---DE---KHS-FEHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPRE-VGNSSGSIRTV  151 (268)
Q Consensus        81 ~D~~v~iw~~~~~---~~---~~~-~~~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~-~~~~~~~v~~~  151 (268)
                      .||.|.+||...-   ..   +.+ -.|...|+.+.|++ ++++||+|+.||+|.+||++..+..... .....+.|.++
T Consensus        88 edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~l  167 (1049)
T KOG0307|consen   88 EDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCL  167 (1049)
T ss_pred             cCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEe
Confidence            9999999998652   21   112 24888999999999 5569999999999999999875543322 11245689999


Q ss_pred             EEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCC---CEEEEEECCCC--cEEEEeC-C--CeEEEEeCCCc-eeee
Q 024372          152 AWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS---PVTSAEVSRDG--RYITTAD-G--SSVKFWDANHF-GLVK  222 (268)
Q Consensus       152 ~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~---~v~~~~~s~~g--~~l~~~~-~--~~v~~wd~~~~-~~~~  222 (268)
                      +|+...+++|++++.+|++.|||+|..+.+-.+..+.   .+..++|+|+.  +++++++ |  -.|.+||+|.- ..++
T Consensus       168 sWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k  247 (1049)
T KOG0307|consen  168 SWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLK  247 (1049)
T ss_pred             ccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchh
Confidence            9999999999999999999999999988877665443   38899999997  3444443 3  36999999874 5677


Q ss_pred             EEeC-CCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEeec
Q 024372          223 GYNM-PCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       223 ~~~~-~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~~  266 (268)
                      .+.. ..++.+..|++.+.+++++++.|+.|.+||..+||.+..+
T Consensus       248 ~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~  292 (1049)
T KOG0307|consen  248 ILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGEL  292 (1049)
T ss_pred             hhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeec
Confidence            7754 4568899999988899999999999999999999998764

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.89  E-value=2e-21  Score=168.09  Aligned_cols=261  Identities=17%  Similarity=0.223  Sum_probs=197.3

Q ss_pred             cceeeecEEeeecCCCeeeEEEec---------CCCCCcEEEEEeCCCCeEEeeCCCCC---e----------EE-----
Q 024372            3 KRKVAVPLVCHGHSRPVVDLFYSP---------ITPDGFFLVSASKDSSPMLRNGETGD---W----------IG-----   55 (268)
Q Consensus         3 ~~~~~~~~~~~~h~~~v~~~~f~~---------~~~dg~~l~s~s~d~~i~iw~~~~~~---~----------~~-----   55 (268)
                      -.|+.+--++.-|+..|+++.--|         --|-+. +.++|.|++||+|+..-+.   .          +.     
T Consensus       356 ~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~c-F~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d  434 (1080)
T KOG1408|consen  356 VNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGC-FTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYED  434 (1080)
T ss_pred             cccccceeeeeeccceeeeeccccccccCcccccCCccc-eeEecCCCcEEEeecccccccceeecccchhhhhcCcccc
Confidence            344555555567999999887765         113343 7899999999999876421   0          00     


Q ss_pred             -------------------EeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeec-cCCeEEEEEECC---
Q 024372           56 -------------------TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSE---  112 (268)
Q Consensus        56 -------------------~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~-~~~~v~~v~~~~---  112 (268)
                                         ..-+-.-.+++++++|++++||+|..-|+++++++.........+ |...|.|+.|+.   
T Consensus       435 ~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~  514 (1080)
T KOG1408|consen  435 STQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVL  514 (1080)
T ss_pred             CchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchh
Confidence                               001123468999999999999999999999999998766655554 889999999976   


Q ss_pred             CCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCc-EEEEeeCCCeEEEEeCCC----CceEEe---e
Q 024372          113 DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQT-ILSSCTDSGGVRLWDARS----GKIVQT---L  184 (268)
Q Consensus       113 ~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~d~~i~iwd~~~----~~~~~~---~  184 (268)
                      ..++||+++.|+.|++||+.....+.+....|...|+++.|...+.+ -+++|+.|+.| .|+...    |.....   .
T Consensus       515 ~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksi-mFr~~qk~~~g~~f~r~t~t  593 (1080)
T KOG1408|consen  515 TNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSI-MFRVNQKASSGRLFPRHTQT  593 (1080)
T ss_pred             hhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhh-heehhccccCceeccccccc
Confidence            45899999999999999997665666777788899999999876643 46677777665 445432    222211   1


Q ss_pred             cCCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCC----CceeeEEcCCCCCEEEeccCCCeEEEEECCC
Q 024372          185 ETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPC----NTESASLEPKLGNIFIAGGEDMWVHVFDFHT  259 (268)
Q Consensus       185 ~~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~  259 (268)
                      ..+..+..+++.|+.+++++ ..|+.|||||++.++.++.|....    ..+.+...| +|-|+++...|+++.++|+.+
T Consensus       594 ~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df~s  672 (1080)
T KOG1408|consen  594 LSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDFVS  672 (1080)
T ss_pred             cccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECC-CccEEEEeecCCceEEEEecc
Confidence            12456899999999998775 589999999999999999997643    245566666 799999999999999999999


Q ss_pred             CcEEeec
Q 024372          260 GEQIAIT  266 (268)
Q Consensus       260 g~~~~~~  266 (268)
                      ||.++.+
T Consensus       673 gEcvA~m  679 (1080)
T KOG1408|consen  673 GECVAQM  679 (1080)
T ss_pred             chhhhhh
Confidence            9998764

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.89  E-value=1.1e-21  Score=169.79  Aligned_cols=240  Identities=16%  Similarity=0.213  Sum_probs=191.6

Q ss_pred             ecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecC-C--CcEEEEeeCCCcEEEEeC
Q 024372           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDA-N--ALFSASGSADFTAKLWDA   90 (268)
Q Consensus        14 ~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~-~--~~~l~s~s~D~~v~iw~~   90 (268)
                      +-.-.|++++.+   |+|++||+|-.-|+++|+++..-+++.+++.|+..|.++.|+. +  .++||++|+|..|-++|+
T Consensus       457 d~r~G~R~~~vS---p~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv  533 (1080)
T KOG1408|consen  457 DSRFGFRALAVS---PDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDV  533 (1080)
T ss_pred             CcccceEEEEEC---CCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEec
Confidence            445678999887   5999999999999999999999999999999999999999983 2  467899999999999999


Q ss_pred             CCCC-eeeee-ccCCeEEEEEECCCC--CEEEEeeCCCeEEEEECCCCCCCCeEecC-----CcccEEEEEEeCCCCcEE
Q 024372           91 LTGD-EKHSF-EHKHIVRACAFSEDT--HLLLTGGFEKILRIFDLNRPDAPPREVGN-----SSGSIRTVAWLHSDQTIL  161 (268)
Q Consensus        91 ~~~~-~~~~~-~~~~~v~~v~~~~~~--~~l~s~~~d~~i~~~d~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~  161 (268)
                      ..+- .+.++ .|...|+++.|-.++  ...++++.|+.| +|+.......-..+..     ....+..++..|.-++++
T Consensus       534 ~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksi-mFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~  612 (1080)
T KOG1408|consen  534 KRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSI-MFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVV  612 (1080)
T ss_pred             ccccchhhhhcccccceeEEEEeecCCceEEEeccCchhh-heehhccccCceeccccccccccceEEEeeeCCCcceEE
Confidence            7543 33444 488899999997766  677899999876 4554421111122211     134566777777766666


Q ss_pred             EEeeCCCeEEEEeCCCCceEEeecC----CCCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeCCCCceeeEEc
Q 024372          162 SSCTDSGGVRLWDARSGKIVQTLET----KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTESASLE  236 (268)
Q Consensus       162 ~~~~~d~~i~iwd~~~~~~~~~~~~----~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~  236 (268)
                      ++| .|+.|+|||+++++..+.|++    .+....+...|.|.|++++ +|+++.++|.-.++++.....+........+
T Consensus       613 t~c-QDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF  691 (1080)
T KOG1408|consen  613 TVC-QDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKF  691 (1080)
T ss_pred             EEe-cccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeee
Confidence            555 569999999999999999974    2567789999999999876 7999999999999999888777776666666


Q ss_pred             CCCCCEEEeccCCCeEEEEECC
Q 024372          237 PKLGNIFIAGGEDMWVHVFDFH  258 (268)
Q Consensus       237 ~~~~~~~~~gs~d~~i~~wd~~  258 (268)
                      .++-+.|++.+.|+.|.+|.+.
T Consensus       692 ~nDCkHlISvsgDgCIFvW~lp  713 (1080)
T KOG1408|consen  692 LNDCKHLISVSGDGCIFVWKLP  713 (1080)
T ss_pred             cccchhheeecCCceEEEEECc
Confidence            6678999999999999999974

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=1.3e-20  Score=155.79  Aligned_cols=233  Identities=16%  Similarity=0.190  Sum_probs=173.4

Q ss_pred             cEEEEEeCCC-CeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeec-cCCeEEEEE
Q 024372           32 FFLVSASKDS-SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACA  109 (268)
Q Consensus        32 ~~l~s~s~d~-~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~-~~~~v~~v~  109 (268)
                      .|++++..-+ .+.+|.+.........---.++|.+++-+|.|.+++.|.--+.+++|.+.+|..+..+. |-..|+|+.
T Consensus        51 ~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~  130 (476)
T KOG0646|consen   51 EYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLK  130 (476)
T ss_pred             hheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEE
Confidence            3555555444 44567766554333111135789999999999999888899999999999999877774 778999999


Q ss_pred             ECCCCCEEEEeeCCCeEEEEECCC-------C-CCCCeEecCCcccEEEEEEeCCCC-cEEEEeeCCCeEEEEeCCCCce
Q 024372          110 FSEDTHLLLTGGFEKILRIFDLNR-------P-DAPPREVGNSSGSIRTVAWLHSDQ-TILSSCTDSGGVRLWDARSGKI  180 (268)
Q Consensus       110 ~~~~~~~l~s~~~d~~i~~~d~~~-------~-~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~d~~i~iwd~~~~~~  180 (268)
                      |+.|+..++||+.||.+.+|++..       . ..+...+..|.-+|+.+...+.+. ..+.+.+.|+++|+||+..+..
T Consensus       131 fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~L  210 (476)
T KOG0646|consen  131 FSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVL  210 (476)
T ss_pred             EeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecccee
Confidence            999999999999999999998631       1 122345567777888877654422 2466677889999999999999


Q ss_pred             EEeecCCCCEEEEEECCCCcEEEEe-CCCeEEEEeCCCce----------------eeeEEeCCC---CceeeEEcCCCC
Q 024372          181 VQTLETKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFG----------------LVKGYNMPC---NTESASLEPKLG  240 (268)
Q Consensus       181 ~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~----------------~~~~~~~~~---~~~~~~~~~~~~  240 (268)
                      +.++.....+.+++++|.++.+..| ++|.|-+.++.+..                .++.+..+.   .+.+++++. +|
T Consensus       211 Llti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~-Dg  289 (476)
T KOG0646|consen  211 LLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST-DG  289 (476)
T ss_pred             eEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec-Cc
Confidence            9988877889999999999877654 67887776653221                122233333   345566666 79


Q ss_pred             CEEEeccCCCeEEEEECCCCcEEee
Q 024372          241 NIFIAGGEDMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       241 ~~~~~gs~d~~i~~wd~~~g~~~~~  265 (268)
                      .+|++|+.|++|.+||+.+-|.+.+
T Consensus       290 tlLlSGd~dg~VcvWdi~S~Q~iRt  314 (476)
T KOG0646|consen  290 TLLLSGDEDGKVCVWDIYSKQCIRT  314 (476)
T ss_pred             cEEEeeCCCCCEEEEecchHHHHHH
Confidence            9999999999999999987776654

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=5e-22  Score=172.92  Aligned_cols=185  Identities=22%  Similarity=0.310  Sum_probs=150.7

Q ss_pred             EeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCC-CcEEEEeeCCCcEEEEe
Q 024372           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN-ALFSASGSADFTAKLWD   89 (268)
Q Consensus        11 ~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~-~~~l~s~s~D~~v~iw~   89 (268)
                      +|-.|+..++.+.|++..|  ++|++||+||+|+.||.+..+-..++.+....|+.|.|+|. +..++++...|.+++||
T Consensus       128 ~f~EH~Rs~~~ldfh~tep--~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWD  205 (839)
T KOG0269|consen  128 VFNEHERSANKLDFHSTEP--NILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWD  205 (839)
T ss_pred             HhhhhccceeeeeeccCCc--cEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEee
Confidence            4457999999999999766  59999999999999999999988899999999999999975 46789999999999999


Q ss_pred             CCCCCe--eeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeC-
Q 024372           90 ALTGDE--KHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTD-  166 (268)
Q Consensus        90 ~~~~~~--~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-  166 (268)
                      +.....  +....|..+|.|+.|+|++.+||||+.|++|++||+.+.+.......+...++.++.|-|..++.+++|+- 
T Consensus       206 lRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv  285 (839)
T KOG0269|consen  206 LRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMV  285 (839)
T ss_pred             ccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhcc
Confidence            975442  23335999999999999999999999999999999986554433333456789999999999888887753 


Q ss_pred             -CCeEEEEeCCCCc-eEEeec-CCCCEEEEEECC
Q 024372          167 -SGGVRLWDARSGK-IVQTLE-TKSPVTSAEVSR  197 (268)
Q Consensus       167 -d~~i~iwd~~~~~-~~~~~~-~~~~v~~~~~s~  197 (268)
                       |-.|+|||++--- +..++. +...+..++|..
T Consensus       286 ~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~  319 (839)
T KOG0269|consen  286 VDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDS  319 (839)
T ss_pred             ccceEEEEeeccccccceeeeccCccccceeccC
Confidence             4589999997543 344554 444467777765

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=5.4e-20  Score=145.23  Aligned_cols=240  Identities=18%  Similarity=0.342  Sum_probs=171.9

Q ss_pred             eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC--C--CeEEEeeCccCcEEEEEecC--CCcEEEEeeCCCcEE
Q 024372           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET--G--DWIGTFEGHKGAVWSCCLDA--NALFSASGSADFTAK   86 (268)
Q Consensus        13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~--~--~~~~~~~~h~~~V~~~~~~~--~~~~l~s~s~D~~v~   86 (268)
                      .+|.+-|.++.|.+   .|+.+|+||.|++++|||..+  +  .+....+.|.+.|..+.|.+  -|+.+|++|.|++++
T Consensus        10 s~h~DlihdVs~D~---~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~   86 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDF---YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVS   86 (361)
T ss_pred             cCCcceeeeeeecc---cCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCcee
Confidence            48999999999984   899999999999999999644  3  36677899999999999853  478999999999999


Q ss_pred             EEeCCCCC---------eeeee-ccCCeEEEEEECC--CCCEEEEeeCCCeEEEEECCCCCCC-----CeEe-------c
Q 024372           87 LWDALTGD---------EKHSF-EHKHIVRACAFSE--DTHLLLTGGFEKILRIFDLNRPDAP-----PREV-------G  142 (268)
Q Consensus        87 iw~~~~~~---------~~~~~-~~~~~v~~v~~~~--~~~~l~s~~~d~~i~~~d~~~~~~~-----~~~~-------~  142 (268)
                      ||.-....         ...++ .....|+.|+|.|  -|..+++++.||.+|+|+...+-..     ..++       +
T Consensus        87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~  166 (361)
T KOG2445|consen   87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG  166 (361)
T ss_pred             eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence            99752111         11222 2456799999999  5789999999999999987543211     1111       1


Q ss_pred             CCcccEEEEEEeCCC--CcEEEEeeCC-----CeEEEEeCCC-C-c--eEEeec-CCCCEEEEEECCC-C---cEEEEe-
Q 024372          143 NSSGSIRTVAWLHSD--QTILSSCTDS-----GGVRLWDARS-G-K--IVQTLE-TKSPVTSAEVSRD-G---RYITTA-  205 (268)
Q Consensus       143 ~~~~~v~~~~~~~~~--~~~~~~~~~d-----~~i~iwd~~~-~-~--~~~~~~-~~~~v~~~~~s~~-g---~~l~~~-  205 (268)
                      .+..+..|+.|++..  .-+++.|+++     +.++||.-.. + +  .+.++. +..+|..++|.|+ |   .+|+.+ 
T Consensus       167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~  246 (361)
T KOG2445|consen  167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVAT  246 (361)
T ss_pred             cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEee
Confidence            244567889998643  2356666664     4799997643 2 2  233443 4578999999997 4   245554 


Q ss_pred             CCCeEEEEeCCCc--------------------eeeeEEe-CCCCceeeEEcCCCCCEEEeccCCCeEEEEEC
Q 024372          206 DGSSVKFWDANHF--------------------GLVKGYN-MPCNTESASLEPKLGNIFIAGGEDMWVHVFDF  257 (268)
Q Consensus       206 ~~~~v~~wd~~~~--------------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~  257 (268)
                      .|| |+||.++.-                    +.+..+. +++......+.- .|..|++.|.||.||+|..
T Consensus       247 kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNm-tGtiLsStGdDG~VRLWka  317 (361)
T KOG2445|consen  247 KDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNM-TGTILSSTGDDGCVRLWKA  317 (361)
T ss_pred             cCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEee-eeeEEeecCCCceeeehhh
Confidence            455 999998631                    1122232 233566777776 6999999999999999975

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.88  E-value=3.6e-21  Score=151.44  Aligned_cols=193  Identities=22%  Similarity=0.351  Sum_probs=149.2

Q ss_pred             eeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCc--EEEEeeCCC
Q 024372            6 VAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANAL--FSASGSADF   83 (268)
Q Consensus         6 ~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~--~l~s~s~D~   83 (268)
                      ...|.....|++||.+++|+   .||..+++|+.|+++++||+.+++ +..+..|.++|.+|.|-+...  .|+|||+|+
T Consensus        62 ~~~~ka~~~~~~PvL~v~Ws---ddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDK  137 (347)
T KOG0647|consen   62 QLVPKAQQSHDGPVLDVCWS---DDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDK  137 (347)
T ss_pred             cccchhhhccCCCeEEEEEc---cCCceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEeccccc
Confidence            34566677899999999998   599999999999999999999995 557888999999999976554  789999999


Q ss_pred             cEEEEeCCCCCeeeeecc------------------------------------------CCeEEEEEECCCCCEEEEee
Q 024372           84 TAKLWDALTGDEKHSFEH------------------------------------------KHIVRACAFSEDTHLLLTGG  121 (268)
Q Consensus        84 ~v~iw~~~~~~~~~~~~~------------------------------------------~~~v~~v~~~~~~~~l~s~~  121 (268)
                      +||+||.+...+..++..                                          +-.++|++..++....+.|+
T Consensus       138 TlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGs  217 (347)
T KOG0647|consen  138 TLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGS  217 (347)
T ss_pred             ceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeee
Confidence            999999976554333211                                          12377888877777778888


Q ss_pred             CCCeEEEEECCCCCC-CCeEecCCc---------ccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeec-CCCCE
Q 024372          122 FEKILRIFDLNRPDA-PPREVGNSS---------GSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE-TKSPV  190 (268)
Q Consensus       122 ~d~~i~~~d~~~~~~-~~~~~~~~~---------~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v  190 (268)
                      -.|.+-+..++.+.. ....+..|+         -.|+.|+|.|..+.++++|+ ||+..+||-.....+++.+ +..++
T Consensus       218 iEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGs-DGtf~FWDkdar~kLk~s~~~~qpI  296 (347)
T KOG0647|consen  218 IEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGS-DGTFSFWDKDARTKLKTSETHPQPI  296 (347)
T ss_pred             ecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecC-CceEEEecchhhhhhhccCcCCCcc
Confidence            888877777665322 122333333         25778999998888777765 5999999998877777765 45679


Q ss_pred             EEEEECCCCcEEE
Q 024372          191 TSAEVSRDGRYIT  203 (268)
Q Consensus       191 ~~~~~s~~g~~l~  203 (268)
                      .++.|+.+|.+++
T Consensus       297 tcc~fn~~G~ifa  309 (347)
T KOG0647|consen  297 TCCSFNRNGSIFA  309 (347)
T ss_pred             ceeEecCCCCEEE
Confidence            9999999999875

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=3.5e-21  Score=159.20  Aligned_cols=204  Identities=17%  Similarity=0.221  Sum_probs=160.7

Q ss_pred             CCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCC---
Q 024372           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT---   92 (268)
Q Consensus        16 ~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~---   92 (268)
                      .++|.+++-+   |.|.+|+.|+..+.+.+|.+.+|+++..+++|-..|.++.|+.|+.++.|||.||.|.+|.+.+   
T Consensus        81 Pg~v~al~s~---n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~  157 (476)
T KOG0646|consen   81 PGPVHALASS---NLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVS  157 (476)
T ss_pred             ccceeeeecC---CCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecc
Confidence            4588899776   5899999999999999999999999999999999999999999999999999999999998732   


Q ss_pred             ------CCeeeee-ccCCeEEEEEECC--CCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEE
Q 024372           93 ------GDEKHSF-EHKHIVRACAFSE--DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS  163 (268)
Q Consensus        93 ------~~~~~~~-~~~~~v~~v~~~~--~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  163 (268)
                            -.+.+.+ .|.-+|+.+...+  -...++|++.|+++++||+..+........  ...+.+++..|.+..++ .
T Consensus       158 a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f--p~si~av~lDpae~~~y-i  234 (476)
T KOG0646|consen  158 ADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF--PSSIKAVALDPAERVVY-I  234 (476)
T ss_pred             cccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec--CCcceeEEEcccccEEE-e
Confidence                  2234444 3777898877655  346899999999999999987655444332  34788888888766555 4


Q ss_pred             eeCCCeEEEEeCCCCc----------------eEEeec-CCC--CEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeE
Q 024372          164 CTDSGGVRLWDARSGK----------------IVQTLE-TKS--PVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKG  223 (268)
Q Consensus       164 ~~~d~~i~iwd~~~~~----------------~~~~~~-~~~--~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~  223 (268)
                      |+.+|.|.+.++.+-.                .+..+. +..  +|.|++++-||.+|++| .|+.|++||+....++++
T Consensus       235 Gt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRt  314 (476)
T KOG0646|consen  235 GTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRT  314 (476)
T ss_pred             cCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHH
Confidence            5667999888764321                122232 223  79999999999999886 589999999988777776


Q ss_pred             Ee
Q 024372          224 YN  225 (268)
Q Consensus       224 ~~  225 (268)
                      ..
T Consensus       315 l~  316 (476)
T KOG0646|consen  315 LQ  316 (476)
T ss_pred             Hh
Confidence            65

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.88  E-value=3.8e-21  Score=164.36  Aligned_cols=244  Identities=20%  Similarity=0.271  Sum_probs=173.4

Q ss_pred             eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEE--eeCccCcEEEEEecCCC-cEEEEeeCCCcEEEEe
Q 024372           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGT--FEGHKGAVWSCCLDANA-LFSASGSADFTAKLWD   89 (268)
Q Consensus        13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~--~~~h~~~V~~~~~~~~~-~~l~s~s~D~~v~iw~   89 (268)
                      ..|.+.|-++.|.|   .-..|++++.|.+++.||+.+.++++.  +-||++.|.+++|.+.. ..|++|++|+.+.|||
T Consensus        97 ~aH~nAifDl~wap---ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD  173 (720)
T KOG0321|consen   97 LAHKNAIFDLKWAP---GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWD  173 (720)
T ss_pred             ccccceeEeeccCC---CceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEE
Confidence            47999999999986   456899999999999999999999887  88999999999999876 5689999999999999


Q ss_pred             CCCCCeee------------------------ee----ccCCeEEE---EEECCCCCEEEEeeC-CCeEEEEECCCCCCC
Q 024372           90 ALTGDEKH------------------------SF----EHKHIVRA---CAFSEDTHLLLTGGF-EKILRIFDLNRPDAP  137 (268)
Q Consensus        90 ~~~~~~~~------------------------~~----~~~~~v~~---v~~~~~~~~l~s~~~-d~~i~~~d~~~~~~~  137 (268)
                      +.......                        ..    .+...+..   +.+..|...||+++. |+.|++||++.....
T Consensus       174 ~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~  253 (720)
T KOG0321|consen  174 CRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTA  253 (720)
T ss_pred             EeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccc
Confidence            85332000                        00    02222333   456678889999887 999999999754321


Q ss_pred             CeE-------ecCC---cccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCce--EEeecCC---CCEEEEEECCCCcEE
Q 024372          138 PRE-------VGNS---SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI--VQTLETK---SPVTSAEVSRDGRYI  202 (268)
Q Consensus       138 ~~~-------~~~~---~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~--~~~~~~~---~~v~~~~~s~~g~~l  202 (268)
                      .+.       ..-+   .-.+.++.....|..++++|. |+.|..|++++...  +..+.++   ..-..-..+|++.++
T Consensus       254 ~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l  332 (720)
T KOG0321|consen  254 YRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT-DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSL  332 (720)
T ss_pred             cccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec-CCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceE
Confidence            111       0011   123556666666778899988 59999999987543  3344332   223455679999998


Q ss_pred             EEe-CCCeEEEEeCCCcee-eeEEeCC-CCceeeEEcCCCCCEEEeccCCCeEEEEECCCC
Q 024372          203 TTA-DGSSVKFWDANHFGL-VKGYNMP-CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTG  260 (268)
Q Consensus       203 ~~~-~~~~v~~wd~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g  260 (268)
                      +++ .|....+|.+.+-+. ...+..+ ..+...++.+..-.-++++++|..+++|++.+|
T Consensus       333 ~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  333 LSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             eccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence            875 588999999876432 2222222 234566666544555788899999999998654

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=1.8e-20  Score=148.72  Aligned_cols=238  Identities=20%  Similarity=0.276  Sum_probs=170.3

Q ss_pred             eeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC------------------------------------eEE
Q 024372           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD------------------------------------WIG   55 (268)
Q Consensus        12 ~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~------------------------------------~~~   55 (268)
                      |.||.+.|++++|+   .||++||+++.|++|++|++.+-+                                    .++
T Consensus        82 LKgH~~~vt~~~Fs---SdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~  158 (420)
T KOG2096|consen   82 LKGHKKEVTDVAFS---SDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC  158 (420)
T ss_pred             hhccCCceeeeEEc---CCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence            45999999999998   499999999999999999875311                                    000


Q ss_pred             Ee-----------------------eCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeecc-CCeEEEEEEC
Q 024372           56 TF-----------------------EGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEH-KHIVRACAFS  111 (268)
Q Consensus        56 ~~-----------------------~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~-~~~v~~v~~~  111 (268)
                      -+                       +.|+..|-.+-...++.+++|++.|-.|-+|++. ++.+..+.. ...-...+.+
T Consensus       159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS  237 (420)
T KOG2096|consen  159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS  237 (420)
T ss_pred             EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence            00                       1133344445555677899999999999999998 777666643 3345567889


Q ss_pred             CCCCEEEEeeCCCeEEEEECC---CCC----CCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCC----c-
Q 024372          112 EDTHLLLTGGFEKILRIFDLN---RPD----APPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG----K-  179 (268)
Q Consensus       112 ~~~~~l~s~~~d~~i~~~d~~---~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~----~-  179 (268)
                      |+|++++++++--.+++|.+-   .++    .....+.+|+..|..++|+++... +++.+.||++||||+.-.    + 
T Consensus       238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r-~vtvSkDG~wriwdtdVrY~~~qD  316 (420)
T KOG2096|consen  238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTR-AVTVSKDGKWRIWDTDVRYEAGQD  316 (420)
T ss_pred             CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcce-eEEEecCCcEEEeeccceEecCCC
Confidence            999999999999999999852   111    122345678899999999887665 455578899999998532    1 


Q ss_pred             --eEEeec-----CCCCEEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEe-CCC-CceeeEEcCCCCCEEEeccCCC
Q 024372          180 --IVQTLE-----TKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYN-MPC-NTESASLEPKLGNIFIAGGEDM  250 (268)
Q Consensus       180 --~~~~~~-----~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~gs~d~  250 (268)
                        .+++..     ..+....+.++|+|+.|+.+.+..+.++..+.++....+. .+. .+.++++.+ +|++++++|+ +
T Consensus       317 pk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~-~g~~~atcGd-r  394 (420)
T KOG2096|consen  317 PKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSS-DGKYIATCGD-R  394 (420)
T ss_pred             chHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecC-CCcEEeeecc-e
Confidence              122221     1123458999999999999988899999988765544443 222 345666666 6998888775 4


Q ss_pred             eEEEEE
Q 024372          251 WVHVFD  256 (268)
Q Consensus       251 ~i~~wd  256 (268)
                      .+++..
T Consensus       395 ~vrv~~  400 (420)
T KOG2096|consen  395 YVRVIR  400 (420)
T ss_pred             eeeeec
Confidence            566665

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=2.2e-21  Score=163.70  Aligned_cols=246  Identities=19%  Similarity=0.250  Sum_probs=180.1

Q ss_pred             EEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC--------CCeEEEeeCccCcEEEEEecCCCcEEEEeeC
Q 024372           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET--------GDWIGTFEGHKGAVWSCCLDANALFSASGSA   81 (268)
Q Consensus        10 ~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~--------~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~   81 (268)
                      +.+..|...|++++|.|..|   .|++|+.|+++++|++++        -+.+.+|++|+++|.++++++++..+.||+.
T Consensus       288 ~tl~s~~d~ir~l~~~~sep---~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~  364 (577)
T KOG0642|consen  288 FTLRSHDDCIRALAFHPSEP---VLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGI  364 (577)
T ss_pred             eeeecchhhhhhhhcCCCCC---eEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeecc
Confidence            35568999999999998776   699999999999999833        2578999999999999999999999999999


Q ss_pred             CCcEEEEeCCCCCe-----------eeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecC--CcccE
Q 024372           82 DFTAKLWDALTGDE-----------KHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN--SSGSI  148 (268)
Q Consensus        82 D~~v~iw~~~~~~~-----------~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~--~~~~v  148 (268)
                      ||+|+.|++-.+.-           -....|.+.|..+.+|+....|++++.||++++|+......  ..++.  ..+.-
T Consensus       365 Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~--~~f~~~~e~g~P  442 (577)
T KOG0642|consen  365 DGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP--CTFGEPKEHGYP  442 (577)
T ss_pred             CceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc--cccCCccccCCc
Confidence            99999997642220           11224888999999999888899999999999998754332  22221  11223


Q ss_pred             EEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCC--------CCEEEEEECCCCcEEEE-eCCCeEEEEeCCCce
Q 024372          149 RTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK--------SPVTSAEVSRDGRYITT-ADGSSVKFWDANHFG  219 (268)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~--------~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~  219 (268)
                      ..+.+-.......+++..-+.-.+.|...+..+..+...        ..++.+..+|++.+.++ ..++.|+++|..++.
T Consensus       443 lsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~  522 (577)
T KOG0642|consen  443 LSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGK  522 (577)
T ss_pred             ceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccc
Confidence            445544333233333223244555566666666655421        34677888898877665 578999999999988


Q ss_pred             eeeEEeCC-CCceeeEEcCCCCCEEEeccCCCeEEEEECCCCc
Q 024372          220 LVKGYNMP-CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGE  261 (268)
Q Consensus       220 ~~~~~~~~-~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~  261 (268)
                      ++..-..+ ....++++.+ .|-+|++|+.|+.+++|+...-.
T Consensus       523 ~l~s~~a~~~svtslai~~-ng~~l~s~s~d~sv~l~kld~k~  564 (577)
T KOG0642|consen  523 ILHSMVAHKDSVTSLAIDP-NGPYLMSGSHDGSVRLWKLDVKT  564 (577)
T ss_pred             cchheeeccceecceeecC-CCceEEeecCCceeehhhccchh
Confidence            87655443 3455666666 69999999999999999875433

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.88  E-value=2.9e-21  Score=153.55  Aligned_cols=241  Identities=16%  Similarity=0.238  Sum_probs=178.7

Q ss_pred             ecCCCeeeEEEecCCCC-CcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCC-cEEEEeeCCCcEEEEeCC
Q 024372           14 GHSRPVVDLFYSPITPD-GFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA-LFSASGSADFTAKLWDAL   91 (268)
Q Consensus        14 ~h~~~v~~~~f~~~~~d-g~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~-~~l~s~s~D~~v~iw~~~   91 (268)
                      .|.+....++|.=-+.+ .-+||.|+.-|.|+|-|+.++++...+.+|.+.|..+.+.|+. ++++++|.|++||+|+++
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~  166 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ  166 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence            48888888888653332 4578888999999999999999999999999999999999976 678999999999999999


Q ss_pred             CCCeeeeec----cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCC---------------------------CeE
Q 024372           92 TGDEKHSFE----HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP---------------------------PRE  140 (268)
Q Consensus        92 ~~~~~~~~~----~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~---------------------------~~~  140 (268)
                      +..++..+.    |...|.++.|++++..+++++.|..+++|+++.++..                           ...
T Consensus       167 ~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst  246 (385)
T KOG1034|consen  167 TDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFST  246 (385)
T ss_pred             CCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccc
Confidence            999999884    8899999999999999999999999999998732100                           001


Q ss_pred             ecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeC-CCCceE-------------EeecC-CCCE--EEEEECCCCcEEE
Q 024372          141 VGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA-RSGKIV-------------QTLET-KSPV--TSAEVSRDGRYIT  203 (268)
Q Consensus       141 ~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~-~~~~~~-------------~~~~~-~~~v--~~~~~s~~g~~l~  203 (268)
                      ...|..+|-|+.|.-  ..+++- +-++.|..|-. +-++.+             ..++. ...+  ..-+|.|-+++|+
T Consensus       247 ~diHrnyVDCvrw~g--d~ilSk-scenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la  323 (385)
T KOG1034|consen  247 TDIHRNYVDCVRWFG--DFILSK-SCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLA  323 (385)
T ss_pred             cccccchHHHHHHHh--hheeec-ccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHh
Confidence            224566677777763  344444 44589999987 222222             22221 1222  3445667788888


Q ss_pred             Ee-CCCeEEEEeCCCceee--eEEeCC---CCceeeEEcCCCCCEEEeccCCCeEEEEECC
Q 024372          204 TA-DGSSVKFWDANHFGLV--KGYNMP---CNTESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (268)
Q Consensus       204 ~~-~~~~v~~wd~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~  258 (268)
                      .+ ..+.|.+||+++.++.  .++..+   ..+...+++ .++++|+...+|+.|--||..
T Consensus       324 ~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS-~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  324 LGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFS-RDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             hccCCCcEEEEECCCCCCccCceEEeccccceeeeeeec-ccCcEEEEEeCCCcEEEEEee
Confidence            76 5789999999887653  222221   123344444 479999999999999999853

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=7.8e-22  Score=178.18  Aligned_cols=247  Identities=15%  Similarity=0.218  Sum_probs=191.9

Q ss_pred             ecCCCeeeEEEecCCCC-CcEEEEEeCCCCeEEeeCCC---C---CeEEEeeCccCcEEEEEecCCCc-EEEEeeCCCcE
Q 024372           14 GHSRPVVDLFYSPITPD-GFFLVSASKDSSPMLRNGET---G---DWIGTFEGHKGAVWSCCLDANAL-FSASGSADFTA   85 (268)
Q Consensus        14 ~h~~~v~~~~f~~~~~d-g~~l~s~s~d~~i~iw~~~~---~---~~~~~~~~h~~~V~~~~~~~~~~-~l~s~s~D~~v   85 (268)
                      .-....+.|+|.+.-.+ --++|.|..||+|.+||...   +   +.+.+++.|++.|+.+.|.+... .||+|+.||.|
T Consensus        62 ~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI  141 (1049)
T KOG0307|consen   62 QSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEI  141 (1049)
T ss_pred             cccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcE
Confidence            34557889999863211 01699999999999998765   2   35778889999999999998775 89999999999


Q ss_pred             EEEeCCCCCeeeee---ccCCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCCCeEecC-CcccEEEEEEeCCCCcE
Q 024372           86 KLWDALTGDEKHSF---EHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGN-SSGSIRTVAWLHSDQTI  160 (268)
Q Consensus        86 ~iw~~~~~~~~~~~---~~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~  160 (268)
                      .|||++..+.-.++   ...+.|.+++|+. ...+|++++.++.+.+||++..+..+..... ....+..++|.|++...
T Consensus       142 ~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTq  221 (1049)
T KOG0307|consen  142 LIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQ  221 (1049)
T ss_pred             EEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCcee
Confidence            99999875544444   2456799999988 4568999999999999999865433332222 22457789999998876


Q ss_pred             EEEeeCCC---eEEEEeCCCC-ceEEeecCC-CCEEEEEECCCC-cEEE-EeCCCeEEEEeCCCceeeeEEeCCCC-cee
Q 024372          161 LSSCTDSG---GVRLWDARSG-KIVQTLETK-SPVTSAEVSRDG-RYIT-TADGSSVKFWDANHFGLVKGYNMPCN-TES  232 (268)
Q Consensus       161 ~~~~~~d~---~i~iwd~~~~-~~~~~~~~~-~~v~~~~~s~~g-~~l~-~~~~~~v~~wd~~~~~~~~~~~~~~~-~~~  232 (268)
                      ++++++|.   .|.+||+|-. ..++++++| ..+.++.|++.+ ++++ ++-|+.|.+|+.++++.+..+....+ ...
T Consensus       222 l~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fd  301 (1049)
T KOG0307|consen  222 LLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFD  301 (1049)
T ss_pred             eeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceee
Confidence            66665554   6999999864 457777654 559999999977 6655 45789999999999999888876444 457


Q ss_pred             eEEcCCCCCEEEeccCCCeEEEEECCCC
Q 024372          233 ASLEPKLGNIFIAGGEDMWVHVFDFHTG  260 (268)
Q Consensus       233 ~~~~~~~~~~~~~gs~d~~i~~wd~~~g  260 (268)
                      +.|++.+...|++++-|+.|.+|.+..+
T Consensus       302 v~w~pr~P~~~A~asfdgkI~I~sl~~~  329 (1049)
T KOG0307|consen  302 VQWCPRNPSVMAAASFDGKISIYSLQGT  329 (1049)
T ss_pred             eeecCCCcchhhhheeccceeeeeeecC
Confidence            7888988889999999999999998643

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=5.4e-20  Score=152.09  Aligned_cols=196  Identities=14%  Similarity=0.213  Sum_probs=155.9

Q ss_pred             cCCCeeeEEEecCCCCCcEEEEEeCCCCeEEee--CCCCCeEEEeeCccCcEEEEEecCCCc-EEEEeeCCCcEEEEeCC
Q 024372           15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRN--GETGDWIGTFEGHKGAVWSCCLDANAL-FSASGSADFTAKLWDAL   91 (268)
Q Consensus        15 h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~--~~~~~~~~~~~~h~~~V~~~~~~~~~~-~l~s~s~D~~v~iw~~~   91 (268)
                      -.++|+++.|+|..   ..|++|+.|++++||.  .+...++..+.--+-+|.+++|.|+|. .+.++++-...+.||+.
T Consensus       212 s~~~I~sv~FHp~~---plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle  288 (514)
T KOG2055|consen  212 SHGGITSVQFHPTA---PLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLE  288 (514)
T ss_pred             CcCCceEEEecCCC---ceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecc
Confidence            34689999999855   4999999999999984  455667777776778999999999998 88999999999999998


Q ss_pred             CCCeeeee---ccC-CeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCC
Q 024372           92 TGDEKHSF---EHK-HIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS  167 (268)
Q Consensus        92 ~~~~~~~~---~~~-~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d  167 (268)
                      +.+....-   .++ ..+.....++++++++..+..|.|.+....+.+.. ..+ .-.+.+..+.|+.++..++++|++ 
T Consensus       289 ~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli-~s~-KieG~v~~~~fsSdsk~l~~~~~~-  365 (514)
T KOG2055|consen  289 TAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELI-TSF-KIEGVVSDFTFSSDSKELLASGGT-  365 (514)
T ss_pred             ccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhh-hee-eeccEEeeEEEecCCcEEEEEcCC-
Confidence            87753322   122 24566677999999999999999999887655433 222 235788999999888777776655 


Q ss_pred             CeEEEEeCCCCceEEeecCCCC--EEEEEECCCCcEEEEeCC-CeEEEEeCC
Q 024372          168 GGVRLWDARSGKIVQTLETKSP--VTSAEVSRDGRYITTADG-SSVKFWDAN  216 (268)
Q Consensus       168 ~~i~iwd~~~~~~~~~~~~~~~--v~~~~~s~~g~~l~~~~~-~~v~~wd~~  216 (268)
                      |.|.+||+++..+++.+...+.  -.+++.+++|.++++|++ |.|.|||..
T Consensus       366 GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~  417 (514)
T KOG2055|consen  366 GEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGN  417 (514)
T ss_pred             ceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccc
Confidence            9999999999999999875544  467888899999998764 889999953

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.88  E-value=2.7e-21  Score=161.40  Aligned_cols=237  Identities=15%  Similarity=0.188  Sum_probs=184.5

Q ss_pred             ecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCe--EEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCC
Q 024372           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW--IGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL   91 (268)
Q Consensus        14 ~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~--~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~   91 (268)
                      .-..-|+++...   |||+.|++|+.-.++.|||+.....  ...+..-....++++.+||.+...++..||.|.|||+.
T Consensus       463 ~rdnyiRSckL~---pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLh  539 (705)
T KOG0639|consen  463 NRDNYIRSCKLL---PDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLH  539 (705)
T ss_pred             CcccceeeeEec---CCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcc
Confidence            455677888777   5999999999999999999876542  33444334567788999999998899999999999999


Q ss_pred             CCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeE
Q 024372           92 TGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (268)
Q Consensus        92 ~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i  170 (268)
                      +...++.+. |.+.+.|+..+++|..|-||+-|+++|.||++.+....+.  ....-|.++.++|.+.+++++ =..+.+
T Consensus       540 nq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqh--dF~SQIfSLg~cP~~dWlavG-Mens~v  616 (705)
T KOG0639|consen  540 NQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQH--DFSSQIFSLGYCPTGDWLAVG-MENSNV  616 (705)
T ss_pred             cceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhh--hhhhhheecccCCCccceeee-cccCcE
Confidence            988888875 8999999999999999999999999999999876543322  223468889999999886654 556788


Q ss_pred             EEEeCCCCceEEeecCCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCC
Q 024372          171 RLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGED  249 (268)
Q Consensus       171 ~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d  249 (268)
                      .+..+..-+..+...+..-|.++.|++.|+++++ +-|..+..|..-.+..+....-.+.+.++.++. +++++||||.|
T Consensus       617 evlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~-ddkyIVTGSGd  695 (705)
T KOG0639|consen  617 EVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISF-DDKYIVTGSGD  695 (705)
T ss_pred             EEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccCcceeeeecc-CceEEEecCCC
Confidence            8877665444443445556999999999999876 568889999987664443222334456677776 69999999999


Q ss_pred             CeEEEEEC
Q 024372          250 MWVHVFDF  257 (268)
Q Consensus       250 ~~i~~wd~  257 (268)
                      ...-||.+
T Consensus       696 kkATVYeV  703 (705)
T KOG0639|consen  696 KKATVYEV  703 (705)
T ss_pred             cceEEEEE
Confidence            99999875

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.87  E-value=8.7e-20  Score=145.03  Aligned_cols=243  Identities=24%  Similarity=0.348  Sum_probs=178.0

Q ss_pred             CeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC-----C-C------eEEEeeCcc-CcEEEEEec-------CCCcEEE
Q 024372           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-----G-D------WIGTFEGHK-GAVWSCCLD-------ANALFSA   77 (268)
Q Consensus        18 ~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~-----~-~------~~~~~~~h~-~~V~~~~~~-------~~~~~l~   77 (268)
                      ...++.|+   |||..+++-+.|..+.+|++-.     + .      ...+++-.+ .-|+..+|-       |+..++|
T Consensus        51 f~kgckWS---PDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a  127 (406)
T KOG2919|consen   51 FLKGCKWS---PDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFA  127 (406)
T ss_pred             hhccceeC---CCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceee
Confidence            34467777   5999999999999999996521     1 1      111222222 346666653       6778899


Q ss_pred             EeeCCCcEEEEeCCCCCeeeeec---cCCe---EEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCe---E----ecCC
Q 024372           78 SGSADFTAKLWDALTGDEKHSFE---HKHI---VRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR---E----VGNS  144 (268)
Q Consensus        78 s~s~D~~v~iw~~~~~~~~~~~~---~~~~---v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~---~----~~~~  144 (268)
                      +.++|.-|.+||..+++.+..+.   |.+.   ..+++|+|||..|++ ++.++|++||+..+.....   .    ....
T Consensus       128 ~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfa-GykrcirvFdt~RpGr~c~vy~t~~~~k~gq  206 (406)
T KOG2919|consen  128 VSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFA-GYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQ  206 (406)
T ss_pred             eccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEee-cccceEEEeeccCCCCCCcchhhhhcccccc
Confidence            99999999999999999877664   5554   458999999999875 5689999999843322211   1    1123


Q ss_pred             cccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeec-CCCCEEEEEECCCCcEEEEeC--CCeEEEEeCCCcee-
Q 024372          145 SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYITTAD--GSSVKFWDANHFGL-  220 (268)
Q Consensus       145 ~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~--~~~v~~wd~~~~~~-  220 (268)
                      .+-+.+++++|.+..+++.++..+.+-|+.-..+++++.+. +.+.|..+.|.++|+.+.+++  +..|..||+|..+- 
T Consensus       207 ~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~p  286 (406)
T KOG2919|consen  207 KGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDP  286 (406)
T ss_pred             cceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccch
Confidence            56788999999998888899888899999888888888775 456799999999998887764  67999999987542 


Q ss_pred             eeEEeCC---CC-ceeeEEcCCCCCEEEeccCCCeEEEEECCC-CcEEee
Q 024372          221 VKGYNMP---CN-TESASLEPKLGNIFIAGGEDMWVHVFDFHT-GEQIAI  265 (268)
Q Consensus       221 ~~~~~~~---~~-~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~-g~~~~~  265 (268)
                      +..+..+   .+ .+.+.+.| .+++|++|+.||.|++||.+. |+++.+
T Consensus       287 v~~L~rhv~~TNQRI~FDld~-~~~~LasG~tdG~V~vwdlk~~gn~~sv  335 (406)
T KOG2919|consen  287 VYALERHVGDTNQRILFDLDP-KGEILASGDTDGSVRVWDLKDLGNEVSV  335 (406)
T ss_pred             hhhhhhhccCccceEEEecCC-CCceeeccCCCccEEEEecCCCCCcccc
Confidence            2222211   12 22344445 699999999999999999987 776655

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=2.6e-19  Score=154.09  Aligned_cols=240  Identities=17%  Similarity=0.248  Sum_probs=185.6

Q ss_pred             cCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC-eEEEeeCccC-cEEEEEecCCCcEEEEeeCCCcEEEEeCCC
Q 024372           15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD-WIGTFEGHKG-AVWSCCLDANALFSASGSADFTAKLWDALT   92 (268)
Q Consensus        15 h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~-~~~~~~~h~~-~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~   92 (268)
                      -..+|.++||+.   +.+.||.+=.||.|.||++..+= +...+.++++ .|..++|.+.+ .|.|.+.+|.|.-||+.+
T Consensus        24 ~Ps~I~slA~s~---kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~-RLFS~g~sg~i~EwDl~~   99 (691)
T KOG2048|consen   24 KPSEIVSLAYSH---KSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG-RLFSSGLSGSITEWDLHT   99 (691)
T ss_pred             eccceEEEEEec---cCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCC-eEEeecCCceEEEEeccc
Confidence            356899999985   44569999999999999998864 3456677755 79999999654 566888999999999999


Q ss_pred             CCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCe-EecCCcccEEEEEEeCCCCcEEEEeeCCCeE
Q 024372           93 GDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR-EVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (268)
Q Consensus        93 ~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i  170 (268)
                      .+.+.... ....|.+++.+|.+..++.|+.||.+..++.+.+..... .+...++.+.+++|.+.+..++ +|+.||.|
T Consensus       100 lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~-~Gs~Dg~I  178 (691)
T KOG2048|consen  100 LKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIA-GGSIDGVI  178 (691)
T ss_pred             CceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEE-ecccCceE
Confidence            99988876 456899999999999999999999888888764432222 2334458899999998876544 56677999


Q ss_pred             EEEeCCCCceEEeecC------C-CC--EEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEeCC-CCceeeEEcCCCC
Q 024372          171 RLWDARSGKIVQTLET------K-SP--VTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMP-CNTESASLEPKLG  240 (268)
Q Consensus       171 ~iwd~~~~~~~~~~~~------~-~~--v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~  240 (268)
                      ++||+.++..++....      + .+  |-++.+-.++.++++.+-|+|.+||-..+.+++.+..+ ....+++..+ .+
T Consensus       179 riwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~-~~  257 (691)
T KOG2048|consen  179 RIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVAD-NE  257 (691)
T ss_pred             EEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcC-CC
Confidence            9999999988773221      1 12  56777778886665555699999999999888888654 4555666655 57


Q ss_pred             CEEEeccCCCeEEEEECCCC
Q 024372          241 NIFIAGGEDMWVHVFDFHTG  260 (268)
Q Consensus       241 ~~~~~gs~d~~i~~wd~~~g  260 (268)
                      ++++++|.|+.|..|...++
T Consensus       258 d~vfsaGvd~~ii~~~~~~~  277 (691)
T KOG2048|consen  258 DRVFSAGVDPKIIQYSLTTN  277 (691)
T ss_pred             CeEEEccCCCceEEEEecCC
Confidence            89999999999988876544

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.87  E-value=5.4e-21  Score=159.63  Aligned_cols=244  Identities=16%  Similarity=0.185  Sum_probs=187.2

Q ss_pred             eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC---eEEEeeC--ccCcEEEEEecCCCcEEEEeeCCCcEEE
Q 024372           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD---WIGTFEG--HKGAVWSCCLDANALFSASGSADFTAKL   87 (268)
Q Consensus        13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~---~~~~~~~--h~~~V~~~~~~~~~~~l~s~s~D~~v~i   87 (268)
                      ..|-+-|.++..+.   ..+++.||+. |-|+|||+....   .+..|..  ..+-+++|...||++-|.+|+.-.++-|
T Consensus       416 L~HGEvVcAvtIS~---~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsi  491 (705)
T KOG0639|consen  416 LAHGEVVCAVTISN---PTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSI  491 (705)
T ss_pred             hccCcEEEEEEecC---CcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeee
Confidence            37999999998874   4568888876 567999987642   3444443  3467999999999999999999999999


Q ss_pred             EeCCCCCeeeeeccC---CeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEe
Q 024372           88 WDALTGDEKHSFEHK---HIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC  164 (268)
Q Consensus        88 w~~~~~~~~~~~~~~---~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  164 (268)
                      ||+.........+..   -....++.+||.+++++++.||.|.+||+... ...+.+.+|.+...||..++++..+ -+|
T Consensus       492 WDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq-~~VrqfqGhtDGascIdis~dGtkl-WTG  569 (705)
T KOG0639|consen  492 WDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ-TLVRQFQGHTDGASCIDISKDGTKL-WTG  569 (705)
T ss_pred             eeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc-eeeecccCCCCCceeEEecCCCcee-ecC
Confidence            999776554433322   23567889999999999999999999999864 4567777888899999998877664 556


Q ss_pred             eCCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEE
Q 024372          165 TDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIF  243 (268)
Q Consensus       165 ~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (268)
                      +-|++||-||+|+++.++.......|.++-.+|++.+++.+ +++.+.+-....-.......+.+-+.++-|.+ .|++|
T Consensus       570 GlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~-cGkwf  648 (705)
T KOG0639|consen  570 GLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAY-CGKWF  648 (705)
T ss_pred             CCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecc-cCcee
Confidence            67799999999999998888877889999999999999877 66778777664432222122222233444555 79999


Q ss_pred             EeccCCCeEEEEECCCCcEE
Q 024372          244 IAGGEDMWVHVFDFHTGEQI  263 (268)
Q Consensus       244 ~~gs~d~~i~~wd~~~g~~~  263 (268)
                      ++-|.|..+-.|.+--|..|
T Consensus       649 vStGkDnlLnawrtPyGasi  668 (705)
T KOG0639|consen  649 VSTGKDNLLNAWRTPYGASI  668 (705)
T ss_pred             eecCchhhhhhccCccccce
Confidence            99999999999998656554

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.87  E-value=5.3e-20  Score=151.99  Aligned_cols=252  Identities=18%  Similarity=0.200  Sum_probs=183.0

Q ss_pred             cceeeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC--eEEEeeCccCcEEEEEecCCCcEEEEee
Q 024372            3 KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDANALFSASGS   80 (268)
Q Consensus         3 ~~~~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~--~~~~~~~h~~~V~~~~~~~~~~~l~s~s   80 (268)
                      -++.....++..|..+|.++.|+|..+  .++.+.|.||+|++-|.+.+.  .+..+..-......+.|+.....++.+.
T Consensus       221 ~~d~d~v~~f~~hs~~Vs~l~F~P~n~--s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~  298 (498)
T KOG4328|consen  221 EKDKDGVYLFTPHSGPVSGLKFSPANT--SQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGD  298 (498)
T ss_pred             CCccCceEEeccCCccccceEecCCCh--hheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEee
Confidence            345566677889999999999999644  578899999999999998874  3434433445566777877777677776


Q ss_pred             CCCcEEEEeCCCCCeee-ee-ccCCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCCC---eEecCCcccEEEEEEe
Q 024372           81 ADFTAKLWDALTGDEKH-SF-EHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPP---REVGNSSGSIRTVAWL  154 (268)
Q Consensus        81 ~D~~v~iw~~~~~~~~~-~~-~~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~---~~~~~~~~~v~~~~~~  154 (268)
                      .=|...+||..++.... .+ .|+..|..++++| ...+++|++.|++.++||++.-....   -....|.-.|.+..|+
T Consensus       299 ~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFS  378 (498)
T KOG4328|consen  299 NVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFS  378 (498)
T ss_pred             cccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEc
Confidence            66689999998876522 22 3777999999999 66789999999999999987422211   2234677899999999


Q ss_pred             CCCCcEEEEeeCCCeEEEEeCC----CCceEEeecCCC------CEEEEEECCCCcEEEEeC-CCeEEEEeCCCceeeeE
Q 024372          155 HSDQTILSSCTDSGGVRLWDAR----SGKIVQTLETKS------PVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKG  223 (268)
Q Consensus       155 ~~~~~~~~~~~~d~~i~iwd~~----~~~~~~~~~~~~------~v~~~~~s~~g~~l~~~~-~~~v~~wd~~~~~~~~~  223 (268)
                      |.++.++.+|- |++|||||..    .-+...++.|..      ....+.|.|+..+++.+. -+.|-++|-...+.+..
T Consensus       379 Ps~gtl~TT~~-D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~e  457 (498)
T KOG4328|consen  379 PSGGTLLTTCQ-DNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCE  457 (498)
T ss_pred             CCCCceEeecc-CCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeee
Confidence            99999777765 5899999983    344445554432      245688999999888774 57899999888776666


Q ss_pred             EeCCC--Cceee-EEcCCCCCEEEe-ccCCCeEEEEECC
Q 024372          224 YNMPC--NTESA-SLEPKLGNIFIA-GGEDMWVHVFDFH  258 (268)
Q Consensus       224 ~~~~~--~~~~~-~~~~~~~~~~~~-gs~d~~i~~wd~~  258 (268)
                      +..+.  .+.++ .++| .+..+++ |+.-|.|+||--+
T Consensus       458 l~~P~~~tI~~vn~~HP-~~~~~~aG~~s~Gki~vft~k  495 (498)
T KOG4328|consen  458 LHDPESSTIPSVNEFHP-MRDTLAAGGNSSGKIYVFTNK  495 (498)
T ss_pred             ccCccccccccceeecc-cccceeccCCccceEEEEecC
Confidence            54432  23333 4455 5664555 5568899999644

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.86  E-value=3.7e-20  Score=154.49  Aligned_cols=243  Identities=14%  Similarity=0.232  Sum_probs=182.2

Q ss_pred             CCeeeEEEecCCCCCcEEEEEeCCCCeEEee--CCCCC--eEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCC
Q 024372           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRN--GETGD--WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT   92 (268)
Q Consensus        17 ~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~--~~~~~--~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~   92 (268)
                      ..+.++.|+.  ..--..|+.+.|+.+++|.  ..+++  +++.+.+.  .-.+++....+.++++|+..++|+|||+..
T Consensus        35 pg~~s~~w~~--~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~  110 (673)
T KOG4378|consen   35 PGDFSFNWQR--RNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRA  110 (673)
T ss_pred             Ccceeeeccc--cceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHH
Confidence            3578888863  1112344446677888884  33333  34444443  334444455668999999999999999986


Q ss_pred             CCeeeee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCC-cccEEEEEEeCCCCcEEEEeeCCCeE
Q 024372           93 GDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNS-SGSIRTVAWLHSDQTILSSCTDSGGV  170 (268)
Q Consensus        93 ~~~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~d~~i  170 (268)
                      ..+.+.+ .|+..|+++.++....++|+++..|.|.+-.+.+.. ....+.+. ...+.-+.|++.-.+++.+.+++|.|
T Consensus       111 kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~-~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~V  189 (673)
T KOG4378|consen  111 KLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQ-KTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAV  189 (673)
T ss_pred             HHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCc-cccceecCCCCeEEEeecccccceeeEeeccCCeE
Confidence            5555554 488899999999999999999999999999887643 33344333 45677899999888999999999999


Q ss_pred             EEEeCCCCceEEeec--CCCCEEEEEECCCCcE-EEE-eCCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEec
Q 024372          171 RLWDARSGKIVQTLE--TKSPVTSAEVSRDGRY-ITT-ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAG  246 (268)
Q Consensus       171 ~iwd~~~~~~~~~~~--~~~~v~~~~~s~~g~~-l~~-~~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  246 (268)
                      .+||+.....+..+.  |..+...++|+|.... +++ |-|..|.+||.+..+..+.+.+..+...++|.+ .|.+|++|
T Consensus       190 tlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~-~G~~L~aG  268 (673)
T KOG4378|consen  190 TLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSE-CGTYLCAG  268 (673)
T ss_pred             EEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecC-CceEEEee
Confidence            999998877765543  5678899999998654 443 579999999999887777777777777778777 69999999


Q ss_pred             cCCCeEEEEECC-CCcEEee
Q 024372          247 GEDMWVHVFDFH-TGEQIAI  265 (268)
Q Consensus       247 s~d~~i~~wd~~-~g~~~~~  265 (268)
                      ...|.|+.||++ +-.++++
T Consensus       269 ~s~G~~i~YD~R~~k~Pv~v  288 (673)
T KOG4378|consen  269 NSKGELIAYDMRSTKAPVAV  288 (673)
T ss_pred             cCCceEEEEecccCCCCceE
Confidence            999999999997 3444544

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.86  E-value=3.7e-20  Score=150.51  Aligned_cols=202  Identities=17%  Similarity=0.289  Sum_probs=152.2

Q ss_pred             EeeCccCcEEEEEecCCC-cEEEEeeCCCcEEEEeCCCCCeee--------eeccCCeEEEEEECC-CCCEEEEeeCCCe
Q 024372           56 TFEGHKGAVWSCCLDANA-LFSASGSADFTAKLWDALTGDEKH--------SFEHKHIVRACAFSE-DTHLLLTGGFEKI  125 (268)
Q Consensus        56 ~~~~h~~~V~~~~~~~~~-~~l~s~s~D~~v~iw~~~~~~~~~--------~~~~~~~v~~v~~~~-~~~~l~s~~~d~~  125 (268)
                      .+.||+++|..++|.|.+ ..+||||.|.+|+||.+-.+...+        ...|...|..+.|+| -.++|++++.|++
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            457999999999999866 568999999999999986544322        234888999999999 4578999999999


Q ss_pred             EEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCC--CCEEEEEECCCCcEEE
Q 024372          126 LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK--SPVTSAEVSRDGRYIT  203 (268)
Q Consensus       126 i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~--~~v~~~~~s~~g~~l~  203 (268)
                      |.+|++.+++.....  .|.+.|.++.|+.++..++++| .|+.|||||.|+++.+..-..|  .....+.|-.+|++++
T Consensus       156 v~iWnv~tgeali~l--~hpd~i~S~sfn~dGs~l~Ttc-kDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~t  232 (472)
T KOG0303|consen  156 VSIWNVGTGEALITL--DHPDMVYSMSFNRDGSLLCTTC-KDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFT  232 (472)
T ss_pred             EEEEeccCCceeeec--CCCCeEEEEEeccCCceeeeec-ccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceee
Confidence            999999988755443  3788999999998887666665 5699999999999998876433  2356677888888777


Q ss_pred             Ee----CCCeEEEEeCCCcee---eeEEeCCCCceeeEEcCCCCCEEE-eccCCCeEEEEECCCCc
Q 024372          204 TA----DGSSVKFWDANHFGL---VKGYNMPCNTESASLEPKLGNIFI-AGGEDMWVHVFDFHTGE  261 (268)
Q Consensus       204 ~~----~~~~v~~wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~gs~d~~i~~wd~~~g~  261 (268)
                      ++    +++.+-+||-.+.+.   +.......++.---+.+ +..+++ +|=.|+.||-|++.+..
T Consensus       233 TGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~-dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  233 TGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDP-DTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             eccccccccceeccCcccccCcceeEEeccCCceEEeeecC-CCCEEEEEecCCcceEEEEecCCC
Confidence            66    367899999876533   23333344433333344 455555 45579999999986544

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=4.7e-19  Score=135.97  Aligned_cols=227  Identities=17%  Similarity=0.278  Sum_probs=168.3

Q ss_pred             eeEEEecCCCCCcEEEEEeCCCCeEEeeCCC---------CC-eEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEe
Q 024372           20 VDLFYSPITPDGFFLVSASKDSSPMLRNGET---------GD-WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (268)
Q Consensus        20 ~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~---------~~-~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~   89 (268)
                      .+-+++   |-+++|+.|+.+|+|-+..+++         |+ .+-.+++|.++|+.++|.  ..+|++|+ ||.|+=|.
T Consensus        14 f~qa~s---p~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~   87 (325)
T KOG0649|consen   14 FAQAIS---PSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE   87 (325)
T ss_pred             HHHhhC---CcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence            334455   5789999999999999986543         22 355668999999999998  44666765 59999988


Q ss_pred             CCCCCe----eeeec-----cC-----CeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeC
Q 024372           90 ALTGDE----KHSFE-----HK-----HIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLH  155 (268)
Q Consensus        90 ~~~~~~----~~~~~-----~~-----~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~  155 (268)
                      .+....    +..++     +.     -.|+++...|..+-++.++.|+.+.-||+++++ ..+...+|.+.+.++.--.
T Consensus        88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~-i~r~~rGHtDYvH~vv~R~  166 (325)
T KOG0649|consen   88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGR-IQREYRGHTDYVHSVVGRN  166 (325)
T ss_pred             ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCE-EEEEEcCCcceeeeeeecc
Confidence            754322    11111     11     148889999987777777899999999999875 4567778999999988633


Q ss_pred             CCCcEEEEeeCCCeEEEEeCCCCceEEeecCC--C-----CEEE--EEECCCCcEEEEeCCCeEEEEeCCCceeeeEEeC
Q 024372          156 SDQTILSSCTDSGGVRLWDARSGKIVQTLETK--S-----PVTS--AEVSRDGRYITTADGSSVKFWDANHFGLVKGYNM  226 (268)
Q Consensus       156 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~--~-----~v~~--~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~  226 (268)
                      ..+. +.+|++||++||||++++++++.++..  .     .+..  .++.-+...++++.+..+.+|.++..+++..|.+
T Consensus       167 ~~~q-ilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslwhLrsse~t~vfpi  245 (325)
T KOG0649|consen  167 ANGQ-ILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLWHLRSSESTCVFPI  245 (325)
T ss_pred             cCcc-eeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCceeEEeccCCCceEEEec
Confidence            3333 456788999999999999999887531  1     0111  3444455688999999999999999999999999


Q ss_pred             CCCceeeEEcCCCCCEEEeccCCCeEEEEEC
Q 024372          227 PCNTESASLEPKLGNIFIAGGEDMWVHVFDF  257 (268)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~  257 (268)
                      +.....+.|.   .+.++++|+...|.-|-.
T Consensus       246 pa~v~~v~F~---~d~vl~~G~g~~v~~~~l  273 (325)
T KOG0649|consen  246 PARVHLVDFV---DDCVLIGGEGNHVQSYTL  273 (325)
T ss_pred             ccceeEeeee---cceEEEeccccceeeeee
Confidence            8777666664   567888888888888865

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.85  E-value=2.3e-19  Score=157.62  Aligned_cols=259  Identities=17%  Similarity=0.202  Sum_probs=199.0

Q ss_pred             CcceeeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEe--eCCCC--CeEEEeeCccCcEEEEEec-CCCcEE
Q 024372            2 DKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLR--NGETG--DWIGTFEGHKGAVWSCCLD-ANALFS   76 (268)
Q Consensus         2 ~~~~~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw--~~~~~--~~~~~~~~h~~~V~~~~~~-~~~~~l   76 (268)
                      |+|+....... .|.+.|..+.|-|-   --.|++++.|..+++|  |..+|  ++++.-.||..|-.++.|- .++.++
T Consensus       275 e~kkl~~v~~n-ah~~sv~~~~fl~~---epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~i  350 (910)
T KOG1539|consen  275 EKKKLINVTRN-AHYGSVTGATFLPG---EPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFI  350 (910)
T ss_pred             CCCeeeeeeec-cccCCcccceecCC---CceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEE
Confidence            45555554433 69999999999874   4489999999999998  43344  4566667999999999987 778899


Q ss_pred             EEeeCCCcEEEEeCCCC-------C-----------------------------------------------eee-----
Q 024372           77 ASGSADFTAKLWDALTG-------D-----------------------------------------------EKH-----   97 (268)
Q Consensus        77 ~s~s~D~~v~iw~~~~~-------~-----------------------------------------------~~~-----   97 (268)
                      .+++.|++.+.+++...       +                                               ..+     
T Consensus       351 lsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~  430 (910)
T KOG1539|consen  351 LSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFR  430 (910)
T ss_pred             EecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEecc
Confidence            99999999888876110       0                                               000     


Q ss_pred             -------eeccC------CeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeE--ecCCcccEEEEEEeCCCCcEEE
Q 024372           98 -------SFEHK------HIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE--VGNSSGSIRTVAWLHSDQTILS  162 (268)
Q Consensus        98 -------~~~~~------~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~  162 (268)
                             .+.+.      ..+++|+.++-|++.+.|...|.|-+|++.++-.....  ...|.++|+.++...-+..++ 
T Consensus       431 n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~v-  509 (910)
T KOG1539|consen  431 NKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLV-  509 (910)
T ss_pred             CcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEE-
Confidence                   11122      34788899999999999999999999999765432222  236888999998655544445 


Q ss_pred             EeeCCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCCC-ceeeEEcCCCC
Q 024372          163 SCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCN-TESASLEPKLG  240 (268)
Q Consensus       163 ~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~  240 (268)
                      +++.+|.++.||..+...+..+.....+.++..+....+++. .++-.|+++|..+.+.++.|..+.+ ....+++| +|
T Consensus       510 sa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~-Dg  588 (910)
T KOG1539|consen  510 SAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSP-DG  588 (910)
T ss_pred             EccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCC-CC
Confidence            555669999999999888888887777888888887666654 5778999999999888888876554 56777777 79


Q ss_pred             CEEEeccCCCeEEEEECCCCcEEeec
Q 024372          241 NIFIAGGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       241 ~~~~~gs~d~~i~~wd~~~g~~~~~~  266 (268)
                      +++++++.|+.|++||+-+|.+|..+
T Consensus       589 rWlisasmD~tIr~wDlpt~~lID~~  614 (910)
T KOG1539|consen  589 RWLISASMDSTIRTWDLPTGTLIDGL  614 (910)
T ss_pred             cEEEEeecCCcEEEEeccCcceeeeE
Confidence            99999999999999999999998763

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=1e-19  Score=145.48  Aligned_cols=186  Identities=14%  Similarity=0.177  Sum_probs=146.2

Q ss_pred             cEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCC--CcEEEEeeCCCcEEEEeCCCCCeeeeec---c-CCeE
Q 024372           32 FFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN--ALFSASGSADFTAKLWDALTGDEKHSFE---H-KHIV  105 (268)
Q Consensus        32 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~--~~~l~s~s~D~~v~iw~~~~~~~~~~~~---~-~~~v  105 (268)
                      ..+|++...+++++||..+|+.++.|++|.+.+..+.|...  ...+.+|+.||+||+||++.......+.   + +.+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            45888999999999999999999999999999988988753  3457899999999999998776544432   2 3466


Q ss_pred             EEEEECCCCCEEEEee----CCCeEEEEECCCCCCCC-eEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCce
Q 024372          106 RACAFSEDTHLLLTGG----FEKILRIFDLNRPDAPP-REVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI  180 (268)
Q Consensus       106 ~~v~~~~~~~~l~s~~----~d~~i~~~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~  180 (268)
                      .+++.+..++++++|.    .+-.+.+||++..+... .....|.+.|+++.|.|++++++++|+-||.|.|+|+.....
T Consensus       121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E  200 (376)
T KOG1188|consen  121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE  200 (376)
T ss_pred             eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence            7777777888888774    45668899998765522 344568889999999999999999999999999999975432


Q ss_pred             ----EEeecCCCCEEEEEECCCC--cEEEEeCCCeEEEEeCCC
Q 024372          181 ----VQTLETKSPVTSAEVSRDG--RYITTADGSSVKFWDANH  217 (268)
Q Consensus       181 ----~~~~~~~~~v~~~~~s~~g--~~l~~~~~~~v~~wd~~~  217 (268)
                          ++++.+...|.++.|..++  ++..-+...+..+|+++.
T Consensus       201 eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~  243 (376)
T KOG1188|consen  201 EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELED  243 (376)
T ss_pred             hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccC
Confidence                4455666678899998887  544446667888887753

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=2.7e-18  Score=147.98  Aligned_cols=237  Identities=16%  Similarity=0.241  Sum_probs=174.2

Q ss_pred             EeeecCC-CeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEe
Q 024372           11 VCHGHSR-PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (268)
Q Consensus        11 ~~~~h~~-~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~   89 (268)
                      +++||++ .|-+++|+    +|..|++.+.+|+|.-||+.+++.+..+....+.|++++.+|.+..++-|+.||.++..+
T Consensus        63 vi~g~~drsIE~L~W~----e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s  138 (691)
T KOG2048|consen   63 VIHGPEDRSIESLAWA----EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFS  138 (691)
T ss_pred             EEecCCCCceeeEEEc----cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEe
Confidence            4566554 78899998    567899999999999999999999999998999999999999999999999999888888


Q ss_pred             CCCCCeeeeec---cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCe----Ee--cC-CcccEEEEEEeCCCCc
Q 024372           90 ALTGDEKHSFE---HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR----EV--GN-SSGSIRTVAWLHSDQT  159 (268)
Q Consensus        90 ~~~~~~~~~~~---~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~----~~--~~-~~~~v~~~~~~~~~~~  159 (268)
                      ...+.......   .+..|.+++|+|++..+++|+.||.|++||..++.....    ..  .. ...-|.++.+..++  
T Consensus       139 ~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--  216 (691)
T KOG2048|consen  139 IGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS--  216 (691)
T ss_pred             cCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC--
Confidence            87766544332   346899999999999999999999999999876543320    00  11 22346777777543  


Q ss_pred             EEEEeeCCCeEEEEeCCCCceEEeec-CCCCEEEEEECCCCcEEEE-eCCCeEEEEeC-CCce---eeeEEeCCC-Ccee
Q 024372          160 ILSSCTDSGGVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYITT-ADGSSVKFWDA-NHFG---LVKGYNMPC-NTES  232 (268)
Q Consensus       160 ~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~-~~~~---~~~~~~~~~-~~~~  232 (268)
                      .+++|...|+|++||...+..++.+. +...|.+++.++++.++.+ |-|+.|--+.. .+..   .......+. ...+
T Consensus       217 tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs  296 (691)
T KOG2048|consen  217 TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRS  296 (691)
T ss_pred             cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCccccee
Confidence            46667777999999999999988776 4567999999999777654 55766554443 3311   222223332 3344


Q ss_pred             eEEcCCCCCEEEeccCCCeEEEEE
Q 024372          233 ASLEPKLGNIFIAGGEDMWVHVFD  256 (268)
Q Consensus       233 ~~~~~~~~~~~~~gs~d~~i~~wd  256 (268)
                      .+..   +..+++||.|..+.+=-
T Consensus       297 ~av~---~~~l~sgG~d~~l~i~~  317 (691)
T KOG2048|consen  297 MAVI---ENALISGGRDFTLAICS  317 (691)
T ss_pred             eeee---cceEEecceeeEEEEcc
Confidence            4443   33777888887665543

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.84  E-value=3.5e-19  Score=151.55  Aligned_cols=240  Identities=20%  Similarity=0.253  Sum_probs=175.2

Q ss_pred             ecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCc--EEEEeeCCCcE
Q 024372            8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANAL--FSASGSADFTA   85 (268)
Q Consensus         8 ~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~--~l~s~s~D~~v   85 (268)
                      +.+++.||++-|++|.-.|   .|.+||+|+.||+++||.+.+|++++++. -.+.|.+++|.|.+.  .||.+ .+..+
T Consensus       392 ~~lvyrGHtg~Vr~iSvdp---~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA-~~~~~  466 (733)
T KOG0650|consen  392 CALVYRGHTGLVRSISVDP---SGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVA-VGECV  466 (733)
T ss_pred             eeeeEeccCCeEEEEEecC---CcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEE-ecCce
Confidence            3456679999999998875   89999999999999999999999998886 346899999998764  34433 33334


Q ss_pred             EEEeCCCC--------------------------------------CeeeeeccCCeEEEEEECCCCCEEEEeeCC---C
Q 024372           86 KLWDALTG--------------------------------------DEKHSFEHKHIVRACAFSEDTHLLLTGGFE---K  124 (268)
Q Consensus        86 ~iw~~~~~--------------------------------------~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d---~  124 (268)
                      .|-+..-+                                      .....+.|...|+.+.||..|.+|++...+   .
T Consensus       467 ~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~  546 (733)
T KOG0650|consen  467 LIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNK  546 (733)
T ss_pred             EEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcc
Confidence            44442111                                      012234577889999999999999987543   5


Q ss_pred             eEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCC-CEEEEEECCCCcEEE
Q 024372          125 ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS-PVTSAEVSRDGRYIT  203 (268)
Q Consensus       125 ~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~-~v~~~~~s~~g~~l~  203 (268)
                      .+-+.++.....+ .-+....+.+.++.|.|....++++ +. +.|+|||+..++.++++.... .+..++++|.|.-|+
T Consensus       547 ~VliHQLSK~~sQ-~PF~kskG~vq~v~FHPs~p~lfVa-Tq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli  623 (733)
T KOG0650|consen  547 SVLIHQLSKRKSQ-SPFRKSKGLVQRVKFHPSKPYLFVA-TQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLI  623 (733)
T ss_pred             eEEEEeccccccc-CchhhcCCceeEEEecCCCceEEEE-ec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEE
Confidence            5778888654332 3333456788899988877666554 55 899999999888887776544 488999999986554


Q ss_pred             -EeCCCeEEEEeCCCc-eeeeEEeCCCC-ceeeEEcCCCCCEEEeccCCCeEEEEE
Q 024372          204 -TADGSSVKFWDANHF-GLVKGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFD  256 (268)
Q Consensus       204 -~~~~~~v~~wd~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~gs~d~~i~~wd  256 (268)
                       ++-++.+..+|+.-. +..++..++.. ..++++++ .--+|++|+.|+.+.|+.
T Consensus       624 ~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~-ryPLfas~sdDgtv~Vfh  678 (733)
T KOG0650|consen  624 LGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHK-RYPLFASGSDDGTVIVFH  678 (733)
T ss_pred             EecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcc-ccceeeeecCCCcEEEEe
Confidence             567899999998643 34455555544 34555555 467899999999999985

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.84  E-value=1.5e-19  Score=150.83  Aligned_cols=206  Identities=15%  Similarity=0.176  Sum_probs=172.8

Q ss_pred             cEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeeccC--CeEEEEE
Q 024372           32 FFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHK--HIVRACA  109 (268)
Q Consensus        32 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~--~~v~~v~  109 (268)
                      .|+++|+..+.|+|||++...+.+.+++|+..|..+.|.-...++|+++..|-|.|-.+.++.....+.+.  ..|+.+.
T Consensus        92 ~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~  171 (673)
T KOG4378|consen   92 LYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLR  171 (673)
T ss_pred             eeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEee
Confidence            69999999999999999966667788999999999999999999999999999999999999988888765  4688999


Q ss_pred             ECCCCC-EEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCC
Q 024372          110 FSEDTH-LLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS  188 (268)
Q Consensus       110 ~~~~~~-~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~  188 (268)
                      |+|..+ +|.+++++|.+.+||+............|..+...|+|+|.+..++++-+.|+.|.+||+++.+....+-...
T Consensus       172 ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~  251 (673)
T KOG4378|consen  172 YSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSH  251 (673)
T ss_pred             cccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecC
Confidence            999665 5667899999999999765544445556888999999999999999998899999999999888777777778


Q ss_pred             CEEEEEECCCCcEEEEe-CCCeEEEEeCCCc-eeeeEEeCCC-CceeeEEcC
Q 024372          189 PVTSAEVSRDGRYITTA-DGSSVKFWDANHF-GLVKGYNMPC-NTESASLEP  237 (268)
Q Consensus       189 ~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~-~~~~~~~~~~-~~~~~~~~~  237 (268)
                      +...++|.++|.+|.+| ..|.|..||+|.. .++.....+. .+.+++|.+
T Consensus       252 Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~  303 (673)
T KOG4378|consen  252 PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQP  303 (673)
T ss_pred             CcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeee
Confidence            89999999999998876 4689999999864 3455554433 245555554

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.84  E-value=1.1e-18  Score=137.35  Aligned_cols=239  Identities=19%  Similarity=0.298  Sum_probs=171.7

Q ss_pred             ecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCC---CcEEEEeeCCCcEEEEeC
Q 024372           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN---ALFSASGSADFTAKLWDA   90 (268)
Q Consensus        14 ~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~---~~~l~s~s~D~~v~iw~~   90 (268)
                      +|.=.|..+-|-|+  |.-++.++|-|++++|||..+-+....|+ -++.|++-+++|-   ..++|+|-+|-.|++-|+
T Consensus        99 ~Hky~iss~~WyP~--DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi  175 (397)
T KOG4283|consen   99 GHKYAISSAIWYPI--DTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDI  175 (397)
T ss_pred             cceeeeeeeEEeee--cCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEec
Confidence            68889999999997  44599999999999999999987766675 4578888888874   457889999999999999


Q ss_pred             CCCCeeeeec-cCCeEEEEEECCCC-CEEEEeeCCCeEEEEECCCCC------------C-C-CeEecCCcccEEEEEEe
Q 024372           91 LTGDEKHSFE-HKHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPD------------A-P-PREVGNSSGSIRTVAWL  154 (268)
Q Consensus        91 ~~~~~~~~~~-~~~~v~~v~~~~~~-~~l~s~~~d~~i~~~d~~~~~------------~-~-~~~~~~~~~~v~~~~~~  154 (268)
                      ..+...+++. |...|.+|.|+|.. -+|++|+.|+.||+||++...            . + .+....|.+.++.++|.
T Consensus       176 ~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~t  255 (397)
T KOG4283|consen  176 ASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWT  255 (397)
T ss_pred             cCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeec
Confidence            9999988885 89999999999955 477899999999999987431            1 1 11123467889999998


Q ss_pred             CCCCcEEEEeeCCCeEEEEeCCCCceE-Eeec---C----CCCEEEEEECCC-CcEEEEeCCCeEEEEeCCCceeeeEEe
Q 024372          155 HSDQTILSSCTDSGGVRLWDARSGKIV-QTLE---T----KSPVTSAEVSRD-GRYITTADGSSVKFWDANHFGLVKGYN  225 (268)
Q Consensus       155 ~~~~~~~~~~~~d~~i~iwd~~~~~~~-~~~~---~----~~~v~~~~~s~~-g~~l~~~~~~~v~~wd~~~~~~~~~~~  225 (268)
                      .++.++++. +.|..+++|+..+|+.. ..+.   +    +..+. +. +.+ +.++..-.++.+.+..+-.++-++.+.
T Consensus       256 Sd~~~l~~~-gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~  332 (397)
T KOG4283|consen  256 SDARYLASC-GTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLS  332 (397)
T ss_pred             ccchhhhhc-cCccceEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeee
Confidence            887765554 55689999999988643 2221   1    11121 11 222 223333344667777766666666665


Q ss_pred             CCCCceeeEEcCCCCCEEEeccCCCeEEEEECC
Q 024372          226 MPCNTESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (268)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~  258 (268)
                      .+-....+++.-++=+...+|..|+.|+.|-..
T Consensus       333 ~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p~  365 (397)
T KOG4283|consen  333 THLKRINCAAYRPDFEQCFTGDMNGNIYMWSPA  365 (397)
T ss_pred             cccceeeEEeecCchhhhhccccCCcccccccc
Confidence            554434444443344567889999999999764

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=1.9e-18  Score=153.29  Aligned_cols=205  Identities=14%  Similarity=0.199  Sum_probs=163.2

Q ss_pred             eecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEE
Q 024372            7 AVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAK   86 (268)
Q Consensus         7 ~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~   86 (268)
                      +.|..+..|.+.|.+++-     ++++|++|+.+.+|.+|....++.-..+.--+-+++.++|+.+|.++|.||.|-.|+
T Consensus        47 e~P~ti~~~g~~v~~ia~-----~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK  121 (933)
T KOG1274|consen   47 EEPETIDISGELVSSIAC-----YSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVK  121 (933)
T ss_pred             cCCchhhccCceeEEEee-----cccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEE
Confidence            345545457788888866     455899999999999998877764333433467899999999999999999999999


Q ss_pred             EEeCCCCCeeeee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEe------cCC-cccEEEEEEeCCCC
Q 024372           87 LWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV------GNS-SGSIRTVAWLHSDQ  158 (268)
Q Consensus        87 iw~~~~~~~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~------~~~-~~~v~~~~~~~~~~  158 (268)
                      +-+..+......+ .|..+|.++.|+|++++||+.+-||.+++||+.++.......      ... ...+..++|.|+++
T Consensus       122 ~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g  201 (933)
T KOG1274|consen  122 LLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGG  201 (933)
T ss_pred             EEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCC
Confidence            9998876655554 599999999999999999999999999999998654322111      111 23456789999999


Q ss_pred             cEEEEeeCCCeEEEEeCCCCceEEeecC---CCCEEEEEECCCCcEEEEeC-CCeEEEEeCCC
Q 024372          159 TILSSCTDSGGVRLWDARSGKIVQTLET---KSPVTSAEVSRDGRYITTAD-GSSVKFWDANH  217 (268)
Q Consensus       159 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~---~~~v~~~~~s~~g~~l~~~~-~~~v~~wd~~~  217 (268)
                      .+++.+.+ +.|++++....+....+..   +..+..+.|+|+|+||+++. ++.|.+||.++
T Consensus       202 ~la~~~~d-~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  202 TLAVPPVD-NTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             eEEeeccC-CeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence            98888776 8999999998887777642   34489999999999999875 89999999985

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.84  E-value=3e-19  Score=156.94  Aligned_cols=196  Identities=21%  Similarity=0.285  Sum_probs=173.5

Q ss_pred             CCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEe---eCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCC
Q 024372           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF---EGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG   93 (268)
Q Consensus        17 ~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~---~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~   93 (268)
                      ..+++++-++   =|+..+.|+..|+|-+++.++|...++|   ..|+++|..++...-++.++|++.+|.+++||....
T Consensus       449 ~~~~av~vs~---CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k  525 (910)
T KOG1539|consen  449 INATAVCVSF---CGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKK  525 (910)
T ss_pred             cceEEEEEec---cCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCc
Confidence            4667777664   6889999999999999999999888888   589999999999988999999999999999999998


Q ss_pred             CeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEE
Q 024372           94 DEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLW  173 (268)
Q Consensus        94 ~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iw  173 (268)
                      ..+..+.....+.++..+....+++.+..|-.|+++|..+. ...+++.+|.+.++.++|+|++.++++++ -|++||+|
T Consensus       526 ~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~-kvvR~f~gh~nritd~~FS~DgrWlisas-mD~tIr~w  603 (910)
T KOG1539|consen  526 VLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTR-KVVREFWGHGNRITDMTFSPDGRWLISAS-MDSTIRTW  603 (910)
T ss_pred             ceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhh-hhhHHhhccccceeeeEeCCCCcEEEEee-cCCcEEEE
Confidence            88888888888999999988889999999999999998764 34677778999999999999999988775 56999999


Q ss_pred             eCCCCceEEeecCCCCEEEEEECCCCcEEEEe--CCCeEEEEeCCC
Q 024372          174 DARSGKIVQTLETKSPVTSAEVSRDGRYITTA--DGSSVKFWDANH  217 (268)
Q Consensus       174 d~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~--~~~~v~~wd~~~  217 (268)
                      |+.++.++--+....++.++.++|+|.||++.  +...|.+|-.+.
T Consensus       604 Dlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNks  649 (910)
T KOG1539|consen  604 DLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKS  649 (910)
T ss_pred             eccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEEchh
Confidence            99999999888878889999999999999875  347899998754

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.84  E-value=6e-17  Score=138.92  Aligned_cols=250  Identities=31%  Similarity=0.480  Sum_probs=186.0

Q ss_pred             cEEeeecCCCeeeEEEecCCCCCcEEEEEeC-CCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCc-EEEEeeCCCcEE
Q 024372            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASK-DSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANAL-FSASGSADFTAK   86 (268)
Q Consensus         9 ~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~-d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~-~l~s~s~D~~v~   86 (268)
                      ...+.+|...|.+++|+|   ++.++++++. |+.+++|+...++.+..+.+|...|..++++|++. ++++++.|+.++
T Consensus       148 ~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~  224 (466)
T COG2319         148 IRTLEGHSESVTSLAFSP---DGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIR  224 (466)
T ss_pred             EEEEecCcccEEEEEECC---CCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEE
Confidence            344568999999999985   7778888886 99999999999999999999999999999999997 666669999999


Q ss_pred             EEeCCCCCeee-ee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEe
Q 024372           87 LWDALTGDEKH-SF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC  164 (268)
Q Consensus        87 iw~~~~~~~~~-~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  164 (268)
                      +||...+.... .+ .|.... ...|++++..+++++.|+.+++|+.............|...+.++.+.|....+++ +
T Consensus       225 ~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~  302 (466)
T COG2319         225 LWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLAS-G  302 (466)
T ss_pred             EEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEE-e
Confidence            99988666665 33 355544 33799999889999999999999987544312222345778999999886666666 6


Q ss_pred             eCCCeEEEEeCCCCceEEeec--CCC-CEEEEEECCCCcEE-EE-eCCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCC
Q 024372          165 TDSGGVRLWDARSGKIVQTLE--TKS-PVTSAEVSRDGRYI-TT-ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKL  239 (268)
Q Consensus       165 ~~d~~i~iwd~~~~~~~~~~~--~~~-~v~~~~~s~~g~~l-~~-~~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  239 (268)
                      +.|+.+++||.++........  .+. .+..+.+.+++..+ .+ ..++.+++|+....................+.+ .
T Consensus       303 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  381 (466)
T COG2319         303 SSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP-D  381 (466)
T ss_pred             eCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCceEEEEEECC-C
Confidence            666889999999887666554  333 48888884342344 34 356889999998765333333332245556666 5


Q ss_pred             CCEEEe-ccCCCeEEEEECCCCcEEee
Q 024372          240 GNIFIA-GGEDMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       240 ~~~~~~-gs~d~~i~~wd~~~g~~~~~  265 (268)
                       ..++. ++.++.+.+|+......+..
T Consensus       382 -~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (466)
T COG2319         382 -GRVVSSGSTDGTVRLWDLSTGSLLRN  407 (466)
T ss_pred             -CCEEEEecCCCceEEEecccCeeeee
Confidence             44554 78999999999987766543

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.84  E-value=5e-17  Score=139.46  Aligned_cols=250  Identities=26%  Similarity=0.460  Sum_probs=188.1

Q ss_pred             EeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC-eEEEeeCccC-cEEEEEe-cCCCc-EEEEee-CCCcE
Q 024372           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD-WIGTFEGHKG-AVWSCCL-DANAL-FSASGS-ADFTA   85 (268)
Q Consensus        11 ~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~-~~~~~~~h~~-~V~~~~~-~~~~~-~l~s~s-~D~~v   85 (268)
                      .+.+|...+..+.|.+   .+..++.++.|+.+.+|+...+. .+..+.++.. .+..+.+ .+++. +++..+ .|+.+
T Consensus        60 ~~~~~~~~i~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  136 (466)
T COG2319          60 LLRGHEDSITSIAFSP---DGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTV  136 (466)
T ss_pred             eeeeccceEEEEEECC---CCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccE
Confidence            3458999999999985   77889999999999999999887 7777777443 6777777 77776 555544 49999


Q ss_pred             EEEeCCC-CCeee-eeccCCeEEEEEECCCCCEEEEeeC-CCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEE
Q 024372           86 KLWDALT-GDEKH-SFEHKHIVRACAFSEDTHLLLTGGF-EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILS  162 (268)
Q Consensus        86 ~iw~~~~-~~~~~-~~~~~~~v~~v~~~~~~~~l~s~~~-d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  162 (268)
                      ++|+... ..... ...|...|..+.|+|+++.+++++. |+.+++|++.... .......|...+.+++|.|.+..+++
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~  215 (466)
T COG2319         137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK-PLSTLAGHTDPVSSLAFSPDGGLLIA  215 (466)
T ss_pred             EEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc-eEEeeccCCCceEEEEEcCCcceEEE
Confidence            9999987 44433 4458889999999999998888885 9999999987532 33444457889999999977765666


Q ss_pred             EeeCCCeEEEEeCCCCceEE-eecCCCCEEEEEECCCCcEEE-EeCCCeEEEEeCCCcee-eeEEeCC-CCceeeEEcCC
Q 024372          163 SCTDSGGVRLWDARSGKIVQ-TLETKSPVTSAEVSRDGRYIT-TADGSSVKFWDANHFGL-VKGYNMP-CNTESASLEPK  238 (268)
Q Consensus       163 ~~~~d~~i~iwd~~~~~~~~-~~~~~~~v~~~~~s~~g~~l~-~~~~~~v~~wd~~~~~~-~~~~~~~-~~~~~~~~~~~  238 (268)
                      +++.|+.|++||.+.+..+. .+..+.......|+|++.+++ ++.++.+++||++.... +..+..+ .......+.| 
T Consensus       216 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-  294 (466)
T COG2319         216 SGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP-  294 (466)
T ss_pred             EecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECC-
Confidence            66788999999999888887 566544332227999996665 56789999999986543 4444222 3344555666 


Q ss_pred             CCCEEEeccCCCeEEEEECCCCcEEee
Q 024372          239 LGNIFIAGGEDMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       239 ~~~~~~~gs~d~~i~~wd~~~g~~~~~  265 (268)
                      .+..+++++.|+.+.+||..++.....
T Consensus       295 ~~~~~~~~~~d~~~~~~~~~~~~~~~~  321 (466)
T COG2319         295 DGKLLASGSSDGTVRLWDLETGKLLSS  321 (466)
T ss_pred             CCCEEEEeeCCCcEEEEEcCCCceEEE
Confidence            577777788888899999887765443

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=1.5e-18  Score=137.62  Aligned_cols=249  Identities=17%  Similarity=0.202  Sum_probs=173.3

Q ss_pred             CcceeeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEE-EEee
Q 024372            2 DKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFS-ASGS   80 (268)
Q Consensus         2 ~~~~~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l-~s~s   80 (268)
                      |-.+...+.++.+|-.||.+++|++   ||..|+++|+|-.|++||+..|.+++.++ -.++|+.+.|+|..... +..=
T Consensus        51 D~~T~~iar~lsaH~~pi~sl~WS~---dgr~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~  126 (405)
T KOG1273|consen   51 DFDTFRIARMLSAHVRPITSLCWSR---DGRKLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATI  126 (405)
T ss_pred             EccccchhhhhhccccceeEEEecC---CCCEeeeecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEE
Confidence            3345556778899999999999984   99999999999999999999999998887 56899999999865432 2233


Q ss_pred             CCCcEEEEeCCCCCeeeeecc------CCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEe
Q 024372           81 ADFTAKLWDALTGDEKHSFEH------KHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWL  154 (268)
Q Consensus        81 ~D~~v~iw~~~~~~~~~~~~~------~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~  154 (268)
                      .+..-.+-++..+.. ..++.      ...-.+..|.+.|+++++|...|.+-++|..+-+............|..+.+.
T Consensus       127 ~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s  205 (405)
T KOG1273|consen  127 MEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVS  205 (405)
T ss_pred             ecCCcEEEEecCCce-eeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEe
Confidence            444455555543211 11111      11223446899999999999999999999876543332222223467777777


Q ss_pred             CCCCcEEEEeeCCCeEEEEeCCC-------Cc--eEEeec---CCCCEEEEEECCCCcEEEEeC--CCeEEEEeCCCcee
Q 024372          155 HSDQTILSSCTDSGGVRLWDARS-------GK--IVQTLE---TKSPVTSAEVSRDGRYITTAD--GSSVKFWDANHFGL  220 (268)
Q Consensus       155 ~~~~~~~~~~~~d~~i~iwd~~~-------~~--~~~~~~---~~~~v~~~~~s~~g~~l~~~~--~~~v~~wd~~~~~~  220 (268)
                      ..+..++ ..+.|+.||.++++.       ++  ..+.++   -+..+++++|+.+|.|+.+++  ...+++|....+.+
T Consensus       206 ~~g~~li-iNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsL  284 (405)
T KOG1273|consen  206 RKGRFLI-INTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSL  284 (405)
T ss_pred             ccCcEEE-EecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcce
Confidence            6666555 445669999999862       11  123332   134688999999999987654  46799999999999


Q ss_pred             eeEEeCCCCcee--eEEcCCCCCEEEeccCCCeEEEEECC
Q 024372          221 VKGYNMPCNTES--ASLEPKLGNIFIAGGEDMWVHVFDFH  258 (268)
Q Consensus       221 ~~~~~~~~~~~~--~~~~~~~~~~~~~gs~d~~i~~wd~~  258 (268)
                      ++.+....+...  +.+.|  -+.++..=..|.|++|.+.
T Consensus       285 VKILhG~kgE~l~DV~whp--~rp~i~si~sg~v~iw~~~  322 (405)
T KOG1273|consen  285 VKILHGTKGEELLDVNWHP--VRPIIASIASGVVYIWAVV  322 (405)
T ss_pred             eeeecCCchhheeeccccc--ceeeeeeccCCceEEEEee
Confidence            999988765443  34444  3334433366789999864

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.83  E-value=1.7e-17  Score=138.86  Aligned_cols=229  Identities=14%  Similarity=0.191  Sum_probs=175.8

Q ss_pred             CCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCC--
Q 024372           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD--   94 (268)
Q Consensus        17 ~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~--   94 (268)
                      +.|.++.|.+   +|+ +++|-.+|.|.||+..+.+..+....|.+.|.+++.-.+|.++ ||+.|..|..||-.-.+  
T Consensus       247 k~Vl~v~F~e---ngd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r  321 (626)
T KOG2106|consen  247 KFVLCVTFLE---NGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRKLR  321 (626)
T ss_pred             eEEEEEEEcC---CCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEe-ecCccceEEeccccccccc
Confidence            5789999985   665 6799999999999998888777777999999999999888764 69999999999832110  


Q ss_pred             ---------------------------------------eeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCC
Q 024372           95 ---------------------------------------EKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPD  135 (268)
Q Consensus        95 ---------------------------------------~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~  135 (268)
                                                             ....+.|.+....++.+|+...+++++.|+.+++|+-  .+
T Consensus       322 ~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~--~k  399 (626)
T KOG2106|consen  322 ETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWND--HK  399 (626)
T ss_pred             cccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccC--Cc
Confidence                                                   0111125556777888999999999999999999982  22


Q ss_pred             CCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEe-CCCeEEEEe
Q 024372          136 APPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-DGSSVKFWD  214 (268)
Q Consensus       136 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~v~~wd  214 (268)
                      .....  ....+..|+.|.|.+  .++.|+-.|...+.|.++...+.......+++.+.++|+|.+++.+ .|+.|.+|.
T Consensus       400 ~~wt~--~~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~  475 (626)
T KOG2106|consen  400 LEWTK--IIEDPAECADFHPSG--VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYR  475 (626)
T ss_pred             eeEEE--EecCceeEeeccCcc--eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEE
Confidence            22222  234578899998877  5666677799999999997766655557789999999999999865 689999998


Q ss_pred             CCCc----eeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEECC
Q 024372          215 ANHF----GLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (268)
Q Consensus       215 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~  258 (268)
                      +...    ..+..+.. +.+.-++|++ ++++|.+-|.|--|..|...
T Consensus       476 Vs~~g~~y~r~~k~~g-s~ithLDwS~-Ds~~~~~~S~d~eiLyW~~~  521 (626)
T KOG2106|consen  476 VSANGRKYSRVGKCSG-SPITHLDWSS-DSQFLVSNSGDYEILYWKPS  521 (626)
T ss_pred             ECCCCcEEEEeeeecC-ceeEEeeecC-CCceEEeccCceEEEEEccc
Confidence            7542    22333334 4566777877 69999999999999999543

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.82  E-value=2.3e-18  Score=148.76  Aligned_cols=255  Identities=18%  Similarity=0.253  Sum_probs=186.9

Q ss_pred             eeeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC---------------------eE---------
Q 024372            5 KVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD---------------------WI---------   54 (268)
Q Consensus         5 ~~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~---------------------~~---------   54 (268)
                      ++.....+.||++=|.+++|.....+-.+||++|.|..||||.+.-+.                     ..         
T Consensus       180 ~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~  259 (764)
T KOG1063|consen  180 SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISF  259 (764)
T ss_pred             ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEeh
Confidence            667777889999999999998766556799999999999999654322                     01         


Q ss_pred             -EEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCC-----------------------------ee--------
Q 024372           55 -GTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD-----------------------------EK--------   96 (268)
Q Consensus        55 -~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~-----------------------------~~--------   96 (268)
                       .-+.||++.|+++.|+|.+..|+|+|.|+++.+|......                             .+        
T Consensus       260 eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg  339 (764)
T KOG1063|consen  260 EALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGG  339 (764)
T ss_pred             hhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCc
Confidence             1124999999999999999889999999999999864320                             00        


Q ss_pred             -eee---------------ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEe---cCCcccEEEEEEeCCC
Q 024372           97 -HSF---------------EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV---GNSSGSIRTVAWLHSD  157 (268)
Q Consensus        97 -~~~---------------~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~---~~~~~~v~~~~~~~~~  157 (268)
                       +.+               .|-..|+.+.|+|.|.+|++.+.|.+-|+|-....+....++   ..|...++|+++.+. 
T Consensus       340 ~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~-  418 (764)
T KOG1063|consen  340 FHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE-  418 (764)
T ss_pred             EEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccC-
Confidence             000               145568999999999999999999999999754211112222   135567889998875 


Q ss_pred             CcEEEEeeCCCeEEEEeCCC-------------------------------------------Cce----EEee------
Q 024372          158 QTILSSCTDSGGVRLWDARS-------------------------------------------GKI----VQTL------  184 (268)
Q Consensus       158 ~~~~~~~~~d~~i~iwd~~~-------------------------------------------~~~----~~~~------  184 (268)
                      ...+++|.+.+-+|+|+...                                           |..    .++.      
T Consensus       419 ~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~  498 (764)
T KOG1063|consen  419 DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPC  498 (764)
T ss_pred             CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCch
Confidence            56677888889999996541                                           000    0000      


Q ss_pred             ------------------------cCCCCEEEEEECCCCcEEEEeC------CCeEEEEeCCCceeeeEEeCCCC-ceee
Q 024372          185 ------------------------ETKSPVTSAEVSRDGRYITTAD------GSSVKFWDANHFGLVKGYNMPCN-TESA  233 (268)
Q Consensus       185 ------------------------~~~~~v~~~~~s~~g~~l~~~~------~~~v~~wd~~~~~~~~~~~~~~~-~~~~  233 (268)
                                              .|...+.+++.+|+|++++++-      -..|++|+..++..++.+..++. +..+
T Consensus       499 ~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l  578 (764)
T KOG1063|consen  499 ELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRL  578 (764)
T ss_pred             hccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEE
Confidence                                    0012589999999999998752      23699999998877776665554 5567


Q ss_pred             EEcCCCCCEEEeccCCCeEEEEECCCCc
Q 024372          234 SLEPKLGNIFIAGGEDMWVHVFDFHTGE  261 (268)
Q Consensus       234 ~~~~~~~~~~~~gs~d~~i~~wd~~~g~  261 (268)
                      .|+| +|++|+++|-|+++.+|+...+.
T Consensus       579 ~FSp-dg~~LLsvsRDRt~sl~~~~~~~  605 (764)
T KOG1063|consen  579 AFSP-DGRYLLSVSRDRTVSLYEVQEDI  605 (764)
T ss_pred             EECC-CCcEEEEeecCceEEeeeeeccc
Confidence            7777 79999999999999999975443

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.82  E-value=1.5e-18  Score=149.69  Aligned_cols=234  Identities=19%  Similarity=0.313  Sum_probs=167.8

Q ss_pred             CeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCC---
Q 024372           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD---   94 (268)
Q Consensus        18 ~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~---   94 (268)
                      .|..++|.|   ||..|+.+.. ..+.+||+++|.++.++++|++-|++++|+.||..+|||+.|+.|.+|+..-..   
T Consensus        14 ci~d~afkP---DGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk   89 (1081)
T KOG1538|consen   14 CINDIAFKP---DGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK   89 (1081)
T ss_pred             chheeEECC---CCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceee
Confidence            899999985   8988886654 456889999999999999999999999999999999999999999999853111   


Q ss_pred             -----eeee--e--------------------------ccC--CeEEEEEECCCCCEEEEeeCCCeEEEEECCCCC-CCC
Q 024372           95 -----EKHS--F--------------------------EHK--HIVRACAFSEDTHLLLTGGFEKILRIFDLNRPD-APP  138 (268)
Q Consensus        95 -----~~~~--~--------------------------~~~--~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~-~~~  138 (268)
                           .++.  +                          .++  ..+.+++|..||++++-|-.+|+|.+-+-..++ ..+
T Consensus        90 YSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I  169 (1081)
T KOG1538|consen   90 YSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKI  169 (1081)
T ss_pred             eccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEE
Confidence                 0000  0                          011  246788899999999999999999998754322 222


Q ss_pred             eEecCCcccEEEEEEeCCCC----cEEEEeeCCCeEEEEeCCCCceEEe-ecCCCCEEEEEECCCCcEEE-EeCCCeEEE
Q 024372          139 REVGNSSGSIRTVAWLHSDQ----TILSSCTDSGGVRLWDARSGKIVQT-LETKSPVTSAEVSRDGRYIT-TADGSSVKF  212 (268)
Q Consensus       139 ~~~~~~~~~v~~~~~~~~~~----~~~~~~~~d~~i~iwd~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~-~~~~~~v~~  212 (268)
                      ...++.+.+|.+++|+|..+    .+++......++.++.+. |+.+.. -...-...|+.+.|+|.|+. +|.++.+.+
T Consensus       170 ~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~  248 (1081)
T KOG1538|consen  170 ERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSL  248 (1081)
T ss_pred             eCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCceEE
Confidence            33355778999999998654    234444444566666654 333321 11223467899999999865 567888888


Q ss_pred             EeCCCceeeeEE-eCCCCceeeEEcCCCCCEEEeccCCCeEEEEECC
Q 024372          213 WDANHFGLVKGY-NMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (268)
Q Consensus       213 wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~  258 (268)
                      |--+. -.+-+. ...+-+.++...| .++.++.|..||+|-.||+.
T Consensus       249 fTR~G-vrLGTvg~~D~WIWtV~~~P-NsQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  249 FTRDG-VRLGTVGEQDSWIWTVQAKP-NSQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             EeecC-eEEeeccccceeEEEEEEcc-CCceEEEEEccCeeehhhhH
Confidence            86432 222222 1233456777777 59999999999999999874

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.81  E-value=3.3e-17  Score=129.63  Aligned_cols=213  Identities=17%  Similarity=0.298  Sum_probs=157.5

Q ss_pred             eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC------C-C--eEEEeeCccCcEEEEEecCC--CcEEEEeeC
Q 024372           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET------G-D--WIGTFEGHKGAVWSCCLDAN--ALFSASGSA   81 (268)
Q Consensus        13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~------~-~--~~~~~~~h~~~V~~~~~~~~--~~~l~s~s~   81 (268)
                      ..|.+.|..+.|.+. .-|+.+|++|.|+++.||.-..      + +  ...++......|+.+.|.|.  |..||+++.
T Consensus        56 rah~~Si~rV~WAhP-EfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~a  134 (361)
T KOG2445|consen   56 RAHDGSIWRVVWAHP-EFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASA  134 (361)
T ss_pred             EecCCcEEEEEecCc-cccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEecc
Confidence            579999999999764 4699999999999999995411      1 2  34567777889999999985  678999999


Q ss_pred             CCcEEEEeCCCCCeeeee------c--------cCCeEEEEEECC---CCCEEEEeeCC-----CeEEEEECCCCCC---
Q 024372           82 DFTAKLWDALTGDEKHSF------E--------HKHIVRACAFSE---DTHLLLTGGFE-----KILRIFDLNRPDA---  136 (268)
Q Consensus        82 D~~v~iw~~~~~~~~~~~------~--------~~~~v~~v~~~~---~~~~l~s~~~d-----~~i~~~d~~~~~~---  136 (268)
                      ||++|||+....-.....      .        +..+..|+.|+|   ...+|+.|+.+     +.+++|..+....   
T Consensus       135 DG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~  214 (361)
T KOG2445|consen  135 DGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWL  214 (361)
T ss_pred             CcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceee
Confidence            999999997654332222      1        445678999988   45788888766     4678887654332   


Q ss_pred             CCeEecCCcccEEEEEEeCCCC---cEEEEeeCCCeEEEEeCCCCc--------------------eEEeec-CCCCEEE
Q 024372          137 PPREVGNSSGSIRTVAWLHSDQ---TILSSCTDSGGVRLWDARSGK--------------------IVQTLE-TKSPVTS  192 (268)
Q Consensus       137 ~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~d~~i~iwd~~~~~--------------------~~~~~~-~~~~v~~  192 (268)
                      ...+...+..+|+.++|.|.-+   +++++++.|| |+||.++...                    .+..+. |+++|-.
T Consensus       215 kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWr  293 (361)
T KOG2445|consen  215 KVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWR  293 (361)
T ss_pred             eehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEE
Confidence            2234557889999999998654   5788888888 9999987311                    122233 4568999


Q ss_pred             EEECCCCcEEEE-eCCCeEEEEeCC---CceeeeEEeCC
Q 024372          193 AEVSRDGRYITT-ADGSSVKFWDAN---HFGLVKGYNMP  227 (268)
Q Consensus       193 ~~~s~~g~~l~~-~~~~~v~~wd~~---~~~~~~~~~~~  227 (268)
                      +.|+-.|..|++ |+||.||+|...   .++++..+...
T Consensus       294 v~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~~e  332 (361)
T KOG2445|consen  294 VRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLKAE  332 (361)
T ss_pred             EEEeeeeeEEeecCCCceeeehhhhhhhhheeeeEEecc
Confidence            999999999876 678999999853   34566555543

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.81  E-value=2.8e-19  Score=142.33  Aligned_cols=200  Identities=25%  Similarity=0.338  Sum_probs=145.7

Q ss_pred             EeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEe---eCccCcEEEEEecCCCcEEEEeeCCCcEEE
Q 024372           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF---EGHKGAVWSCCLDANALFSASGSADFTAKL   87 (268)
Q Consensus        11 ~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~---~~h~~~V~~~~~~~~~~~l~s~s~D~~v~i   87 (268)
                      -+.||-..|+.+.|.|..  -+++++||.|.+||+|++++..++..|   .||.+.|.++.|++++.+++|++.|+++++
T Consensus       130 ~~~ghG~sINeik~~p~~--~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~  207 (385)
T KOG1034|consen  130 NYRGHGGSINEIKFHPDR--PQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKL  207 (385)
T ss_pred             ceeccCccchhhhcCCCC--CcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEE
Confidence            346899999999999954  479999999999999999999998777   579999999999999999999999999999


Q ss_pred             EeCCCCCe------e-------------------eee----ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCC-
Q 024372           88 WDALTGDE------K-------------------HSF----EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP-  137 (268)
Q Consensus        88 w~~~~~~~------~-------------------~~~----~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~-  137 (268)
                      |++...+.      .                   ..+    -|..+|.|+.|-  |.++++-+-++.|..|-...-+.. 
T Consensus       208 W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~  285 (385)
T KOG1034|consen  208 WRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESI  285 (385)
T ss_pred             EecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhh
Confidence            99863221      0                   000    145556666664  468888888899999976211100 


Q ss_pred             ------------CeEecCCcccEEEEEE--eCCCCcEEEEeeCCCeEEEEeCCCCceE--Eeec---CCCCEEEEEECCC
Q 024372          138 ------------PREVGNSSGSIRTVAW--LHSDQTILSSCTDSGGVRLWDARSGKIV--QTLE---TKSPVTSAEVSRD  198 (268)
Q Consensus       138 ------------~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~d~~i~iwd~~~~~~~--~~~~---~~~~v~~~~~s~~  198 (268)
                                  ...+.-.+..+.-+.|  .+-+ .+++.|...|.|.+||++..+..  .++.   ....|...+|+.|
T Consensus       286 ~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~-~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~d  364 (385)
T KOG1034|consen  286 HNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQ-KMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRD  364 (385)
T ss_pred             hccCCCccceeeeeEeccCccceEEEEEeecHHH-HHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeeccc
Confidence                        0111122334444443  3333 35566677799999999987652  2222   2356999999999


Q ss_pred             CcEEEE-eCCCeEEEEeC
Q 024372          199 GRYITT-ADGSSVKFWDA  215 (268)
Q Consensus       199 g~~l~~-~~~~~v~~wd~  215 (268)
                      |.+|+. .++++|.-||.
T Consensus       365 gs~lv~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  365 GSILVLVCDDGTVWRWDR  382 (385)
T ss_pred             CcEEEEEeCCCcEEEEEe
Confidence            998765 68899999985

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.81  E-value=1.4e-17  Score=146.22  Aligned_cols=248  Identities=15%  Similarity=0.092  Sum_probs=177.0

Q ss_pred             ecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCe--EEEe----eCccCcEEEEEecCCCc--EEEEe
Q 024372            8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW--IGTF----EGHKGAVWSCCLDANAL--FSASG   79 (268)
Q Consensus         8 ~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~--~~~~----~~h~~~V~~~~~~~~~~--~l~s~   79 (268)
                      .|-...--..+|.+++|+|..  .++||.|+.+|+|-+||+..+..  ...+    ..|..+|..+.|..+..  -++|+
T Consensus       234 ~Pe~~~~~~s~v~~~~f~p~~--p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~  311 (555)
T KOG1587|consen  234 TPELVLESPSEVTCLKFCPFD--PNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSL  311 (555)
T ss_pred             CceEEEecCCceeEEEeccCC--cceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEE
Confidence            344344457799999999964  46999999999999999988764  2222    46889999999865443  37899


Q ss_pred             eCCCcEEEEeCCCCCeee------eec-------cCCeEEEEEECC-CCCEEEEeeCCCeEEEEE---CCCCC----CCC
Q 024372           80 SADFTAKLWDALTGDEKH------SFE-------HKHIVRACAFSE-DTHLLLTGGFEKILRIFD---LNRPD----APP  138 (268)
Q Consensus        80 s~D~~v~iw~~~~~~~~~------~~~-------~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d---~~~~~----~~~  138 (268)
                      |.||.|..|++..-....      ...       ....++++.|.+ +...++.|+.+|.|..=+   .....    ...
T Consensus       312 ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~  391 (555)
T KOG1587|consen  312 SSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGH  391 (555)
T ss_pred             ecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccc
Confidence            999999999874322100      111       122578899988 677899999999987622   22111    112


Q ss_pred             eEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCC-CCceEEeecCCCC-EEEEEECCCCcE-EEEe-CCCeEEEEe
Q 024372          139 REVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR-SGKIVQTLETKSP-VTSAEVSRDGRY-ITTA-DGSSVKFWD  214 (268)
Q Consensus       139 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~-~~~~~~~~~~~~~-v~~~~~s~~g~~-l~~~-~~~~v~~wd  214 (268)
                      .....|.+++.++.++|-...++++++ |-+++||.-. ...++..+..+.. +.+++|||..-- +++. .+|.+.+||
T Consensus       392 ~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWD  470 (555)
T KOG1587|consen  392 STFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWD  470 (555)
T ss_pred             ccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhh
Confidence            234457889999999998888888877 5899999987 5566666655444 999999998743 3444 579999999


Q ss_pred             CCC--ceeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEECC
Q 024372          215 ANH--FGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (268)
Q Consensus       215 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~  258 (268)
                      +..  .+++.+.............++.|+.+++|...|.+++|++.
T Consensus       471 Ll~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~  516 (555)
T KOG1587|consen  471 LLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS  516 (555)
T ss_pred             hhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence            964  34454444433344444555579999999999999999984

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.81  E-value=3e-18  Score=136.33  Aligned_cols=231  Identities=18%  Similarity=0.311  Sum_probs=169.1

Q ss_pred             CCCeeeEEEec----CCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeC--ccCc---EEEEEecCCCcEEEEeeCCCcEE
Q 024372           16 SRPVVDLFYSP----ITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG--HKGA---VWSCCLDANALFSASGSADFTAK   86 (268)
Q Consensus        16 ~~~v~~~~f~~----~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~--h~~~---V~~~~~~~~~~~l~s~s~D~~v~   86 (268)
                      -+.|...+|-|    ..|+.+++|+.+++.-|.+||.-+|++...+++  |.+.   ..+++|+|||.+|. ++....||
T Consensus       104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlf-aGykrcir  182 (406)
T KOG2919|consen  104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLF-AGYKRCIR  182 (406)
T ss_pred             CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEe-ecccceEE
Confidence            34677777753    347889999999999999999999999888875  4433   46789999999875 45788999


Q ss_pred             EEeCCCCCe----eeeecc-----CCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCC
Q 024372           87 LWDALTGDE----KHSFEH-----KHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHS  156 (268)
Q Consensus        87 iw~~~~~~~----~~~~~~-----~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~  156 (268)
                      ++|+.....    ..++.+     ...+.+++|+| +.++++.|++.+.+-+|.-.. ..+....+.|++.|+.+.|.++
T Consensus       183 vFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~-~~pl~llggh~gGvThL~~~ed  261 (406)
T KOG2919|consen  183 VFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG-RRPLQLLGGHGGGVTHLQWCED  261 (406)
T ss_pred             EeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC-CCceeeecccCCCeeeEEeccC
Confidence            999844321    222223     45688999999 667999999999998887543 4456777789999999999999


Q ss_pred             CCcEEEEeeCCCeEEEEeCCCC-ceEEeecCCCC----EEEEEECCCCcEEEEe-CCCeEEEEeCCCc-eeeeEEeCCCC
Q 024372          157 DQTILSSCTDSGGVRLWDARSG-KIVQTLETKSP----VTSAEVSRDGRYITTA-DGSSVKFWDANHF-GLVKGYNMPCN  229 (268)
Q Consensus       157 ~~~~~~~~~~d~~i~iwd~~~~-~~~~~~~~~~~----v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~-~~~~~~~~~~~  229 (268)
                      +.++++++..|..|..||+|.- ..+..+..+..    -.-..+.|++++|+++ .+|.|++||++.. ..+..+..+..
T Consensus       262 Gn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd  341 (406)
T KOG2919|consen  262 GNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSD  341 (406)
T ss_pred             cCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccc
Confidence            9999998888889999999864 44555553321    2234567999999987 6899999999884 33555544333


Q ss_pred             -ceeeEEcCCCCCEEEeccCC
Q 024372          230 -TESASLEPKLGNIFIAGGED  249 (268)
Q Consensus       230 -~~~~~~~~~~~~~~~~gs~d  249 (268)
                       ...+++.| .=.++++++..
T Consensus       342 ~vNgvslnP-~mpilatssGq  361 (406)
T KOG2919|consen  342 TVNGVSLNP-IMPILATSSGQ  361 (406)
T ss_pred             cccceecCc-ccceeeeccCc
Confidence             22344444 34455555544

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=5.5e-18  Score=134.69  Aligned_cols=195  Identities=19%  Similarity=0.294  Sum_probs=149.2

Q ss_pred             cCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCC
Q 024372           15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD   94 (268)
Q Consensus        15 h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~   94 (268)
                      |.-+|..+-.   +.++.++++++.|-+|-+|+.. |+++.++......-+.++++|+|+++++++..--|++|.+--.+
T Consensus       186 h~v~~i~iGi---A~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~k  261 (420)
T KOG2096|consen  186 HQVDIINIGI---AGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTK  261 (420)
T ss_pred             cccceEEEee---cCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEecc
Confidence            5555555444   3678999999999999999998 99998888777777888999999999999999999999873221


Q ss_pred             ------eeeee---ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCC------CCeEe----cCCcccEEEEEEeC
Q 024372           95 ------EKHSF---EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDA------PPREV----GNSSGSIRTVAWLH  155 (268)
Q Consensus        95 ------~~~~~---~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~------~~~~~----~~~~~~v~~~~~~~  155 (268)
                            ..+.+   .|+..|...+|+++....++.+.||.+|+||.+-.-.      .....    ....+.-.-+..+|
T Consensus       262 dG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP  341 (420)
T KOG2096|consen  262 DGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSP  341 (420)
T ss_pred             CcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCC
Confidence                  12222   3888999999999999999999999999999753110      00111    01112223577788


Q ss_pred             CCCcEEEEeeCCCeEEEEeCCCCceEEeec--CCCCEEEEEECCCCcEEEEeCCCeEEEEeC
Q 024372          156 SDQTILSSCTDSGGVRLWDARSGKIVQTLE--TKSPVTSAEVSRDGRYITTADGSSVKFWDA  215 (268)
Q Consensus       156 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~  215 (268)
                      +++.+.++ .. ..|+++..++|+...+++  +...+.++.|+|+|+++++..|+.+++...
T Consensus       342 ~g~~lA~s-~g-s~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGdr~vrv~~n  401 (420)
T KOG2096|consen  342 SGDSLAVS-FG-SDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGDRYVRVIRN  401 (420)
T ss_pred             CCcEEEee-cC-CceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecceeeeeecC
Confidence            88765544 33 579999999998877776  445699999999999999999999998764

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.81  E-value=3.9e-18  Score=133.96  Aligned_cols=197  Identities=16%  Similarity=0.230  Sum_probs=154.5

Q ss_pred             ecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC---eEEEeeCccCcEEEEEecCCC-cEEEEeeCCCcEEEEe
Q 024372           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD---WIGTFEGHKGAVWSCCLDANA-LFSASGSADFTAKLWD   89 (268)
Q Consensus        14 ~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~---~~~~~~~h~~~V~~~~~~~~~-~~l~s~s~D~~v~iw~   89 (268)
                      .+..|+++..|+...  -+++.+.|-|-|+.|||+++|.   ....|-+|...|+.++|...+ +.+||.|.||.+|+||
T Consensus       148 ~~~aPlTSFDWne~d--p~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFD  225 (364)
T KOG0290|consen  148 EFCAPLTSFDWNEVD--PNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFD  225 (364)
T ss_pred             ccCCcccccccccCC--cceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEE
Confidence            467799999999864  4799999999999999999873   355677899999999999866 5789999999999999


Q ss_pred             CCCCCeeeee-c---cCCeEEEEEECC-CCCEEEEee-CCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEE
Q 024372           90 ALTGDEKHSF-E---HKHIVRACAFSE-DTHLLLTGG-FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS  163 (268)
Q Consensus        90 ~~~~~~~~~~-~---~~~~v~~v~~~~-~~~~l~s~~-~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  163 (268)
                      +........+ +   ...+..-++|++ |.+++|+-. ....|.+.|++.+........+|++.|+.++|.|....-+.+
T Consensus       226 LR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hict  305 (364)
T KOG0290|consen  226 LRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICT  305 (364)
T ss_pred             ecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeee
Confidence            9765543322 2   244677788988 556777644 446788999998887788888999999999999988888888


Q ss_pred             eeCCCeEEEEeCCCC-c-----eEEeecCCCCEEEEEECCC-CcEEEEeCCCeEEE
Q 024372          164 CTDSGGVRLWDARSG-K-----IVQTLETKSPVTSAEVSRD-GRYITTADGSSVKF  212 (268)
Q Consensus       164 ~~~d~~i~iwd~~~~-~-----~~~~~~~~~~v~~~~~s~~-g~~l~~~~~~~v~~  212 (268)
                      +++|..+.|||+.+- +     .+..+...++|+.+.|+|. +..++...++.+.+
T Consensus       306 aGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~kklei  361 (364)
T KOG0290|consen  306 AGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFGKKLEI  361 (364)
T ss_pred             cCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEecCeeeE
Confidence            899999999999652 1     2333445678999999965 56777666555443

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.81  E-value=1.5e-16  Score=133.35  Aligned_cols=242  Identities=18%  Similarity=0.231  Sum_probs=172.3

Q ss_pred             cCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeE---EEeeCcc-CcEEEEEecCCCcEEEEeeCCCcEEEEeC
Q 024372           15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWI---GTFEGHK-GAVWSCCLDANALFSASGSADFTAKLWDA   90 (268)
Q Consensus        15 h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~---~~~~~h~-~~V~~~~~~~~~~~l~s~s~D~~v~iw~~   90 (268)
                      -++.|..+.|+|.  |-+++++. .-+.+.+|+.+.+.+.   ..|++++ .-|.+++|.++++. +||..+|.|.||+.
T Consensus       199 sne~v~~a~FHPt--d~nliit~-Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdv-iTgDS~G~i~Iw~~  274 (626)
T KOG2106|consen  199 SNEVVFLATFHPT--DPNLIITC-GKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDV-ITGDSGGNILIWSK  274 (626)
T ss_pred             ccceEEEEEeccC--CCcEEEEe-CCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCE-EeecCCceEEEEeC
Confidence            3567889999995  44455555 4567889999988654   5566654 46999999999985 69999999999999


Q ss_pred             CCCCeee-eeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCC----------CeE-------------------
Q 024372           91 LTGDEKH-SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP----------PRE-------------------  140 (268)
Q Consensus        91 ~~~~~~~-~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~----------~~~-------------------  140 (268)
                      .+....+ ...|...|.+++.-.+|.+| +|+.|+.|..||-+-.+..          .+.                   
T Consensus       275 ~~~~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~  353 (626)
T KOG2106|consen  275 GTNRISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQ  353 (626)
T ss_pred             CCceEEeEeeecCCceEEEEEecCccEe-ecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEE
Confidence            7766533 34688899999999899755 5999999999983211000          000                   


Q ss_pred             ----------ecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEeCCCeE
Q 024372          141 ----------VGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSV  210 (268)
Q Consensus       141 ----------~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v  210 (268)
                                ...|......++..| ...++++|+.|+.++||+  ..+...+.....++.++.|+|.|.+.++...+.-
T Consensus       354 Gt~~~~f~~~v~gh~delwgla~hp-s~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w  430 (626)
T KOG2106|consen  354 GTLENGFTLTVQGHGDELWGLATHP-SKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSGVVAVGTATGRW  430 (626)
T ss_pred             eeecCCceEEEEecccceeeEEcCC-ChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcceEEEeeccceE
Confidence                      011223344555444 345677888889999999  4555555555678899999999944444556788


Q ss_pred             EEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEECC-CCcEEee
Q 024372          211 KFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFH-TGEQIAI  265 (268)
Q Consensus       211 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~-~g~~~~~  265 (268)
                      -+.|.++...+....-........++| +|.+|+.||.|..||+|.+. +|.+...
T Consensus       431 ~V~d~e~~~lv~~~~d~~~ls~v~ysp-~G~~lAvgs~d~~iyiy~Vs~~g~~y~r  485 (626)
T KOG2106|consen  431 FVLDTETQDLVTIHTDNEQLSVVRYSP-DGAFLAVGSHDNHIYIYRVSANGRKYSR  485 (626)
T ss_pred             EEEecccceeEEEEecCCceEEEEEcC-CCCEEEEecCCCeEEEEEECCCCcEEEE
Confidence            888998877666555444444555555 79999999999999999986 4554443

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=2.5e-18  Score=145.23  Aligned_cols=214  Identities=19%  Similarity=0.247  Sum_probs=160.2

Q ss_pred             EEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEee-CccCcEEEEEecCC--CcEEEEeeCCCcEE
Q 024372           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE-GHKGAVWSCCLDAN--ALFSASGSADFTAK   86 (268)
Q Consensus        10 ~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~-~h~~~V~~~~~~~~--~~~l~s~s~D~~v~   86 (268)
                      ..|.||++.|++|+|+.   ||.+|++||.|--+.|||....+++..+. ||.+.|+++.|-|.  ..+++||+.|..|+
T Consensus        44 ~eL~GH~GCVN~LeWn~---dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~  120 (758)
T KOG1310|consen   44 AELTGHTGCVNCLEWNA---DGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK  120 (758)
T ss_pred             hhhccccceecceeecC---CCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence            34679999999999984   99999999999999999999999888885 89999999999874  46789999999999


Q ss_pred             EEeCCCCC----------eeeee-ccCCeEEEEEECCCC-CEEEEeeCCCeEEEEECCCCCCCCeEecCC---------c
Q 024372           87 LWDALTGD----------EKHSF-EHKHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAPPREVGNS---------S  145 (268)
Q Consensus        87 iw~~~~~~----------~~~~~-~~~~~v~~v~~~~~~-~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~---------~  145 (268)
                      ++|+...+          ....+ -|...|..++-.|++ ..+-+++.||+|+-+|++.+..-......+         -
T Consensus       121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l  200 (758)
T KOG1310|consen  121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL  200 (758)
T ss_pred             EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence            99997422          11112 267778888888877 789999999999999998643211111111         1


Q ss_pred             ccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCC--------C----------ceEEeecC-C------------CCEEEEE
Q 024372          146 GSIRTVAWLHSDQTILSSCTDSGGVRLWDARS--------G----------KIVQTLET-K------------SPVTSAE  194 (268)
Q Consensus       146 ~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~--------~----------~~~~~~~~-~------------~~v~~~~  194 (268)
                      -...|+..+|...++++.|+.|-..++||.|.        +          .|++.+.. +            .-+.-++
T Consensus       201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vt  280 (758)
T KOG1310|consen  201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVT  280 (758)
T ss_pred             heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEE
Confidence            23568888999999999998889999999431        1          12333321 1            0145678


Q ss_pred             ECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeC
Q 024372          195 VSRDGRYITTA-DGSSVKFWDANHFGLVKGYNM  226 (268)
Q Consensus       195 ~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~  226 (268)
                      |+|+|.-|..+ .+..|.++|+...+....|..
T Consensus       281 fnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~~  313 (758)
T KOG1310|consen  281 FNPNGTELLVSWGGEHVYLFDVNEDKSPTPYFL  313 (758)
T ss_pred             ECCCCcEEEEeeCCeEEEEEeecCCCCceeecC
Confidence            99999766554 567899999977655544443

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=3.7e-18  Score=141.34  Aligned_cols=210  Identities=19%  Similarity=0.256  Sum_probs=163.6

Q ss_pred             eeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcE
Q 024372            6 VAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTA   85 (268)
Q Consensus         6 ~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v   85 (268)
                      +.+..-+.|++...  +..-.+++++++||.++..|-|.+....+++++.+++ -.+.|..++|+.+++.++.++.+|.|
T Consensus       292 ~~k~~~~~g~e~~~--~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV  368 (514)
T KOG2055|consen  292 VTKLKPPYGVEEKS--MERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEV  368 (514)
T ss_pred             cccccCCCCcccch--hheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceE
Confidence            33333344665432  2223445799999999999999999999999998887 46889999999999999888899999


Q ss_pred             EEEeCCCCCeeeeeccCCeE--EEEEECCCCCEEEEeeCCCeEEEEECCCC-----CCCCeEecCCcccEEEEEEeCCCC
Q 024372           86 KLWDALTGDEKHSFEHKHIV--RACAFSEDTHLLLTGGFEKILRIFDLNRP-----DAPPREVGNSSGSIRTVAWLHSDQ  158 (268)
Q Consensus        86 ~iw~~~~~~~~~~~~~~~~v--~~v~~~~~~~~l~s~~~d~~i~~~d~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~  158 (268)
                      .+||++...+.+.+.....|  ++++.++++.+||+|+..|.+.+||.++-     ..+...+.+....|+.++|+|+.+
T Consensus       369 ~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~q  448 (514)
T KOG2055|consen  369 YVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQ  448 (514)
T ss_pred             EEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchh
Confidence            99999999999998766655  45677889999999999999999996431     122334445566899999999888


Q ss_pred             cEEEEe-eCCCeEEEEeCCCCceEEeecCC----CCEEEEEECCCCcEEEEe-CCCeEEEEeCCCc
Q 024372          159 TILSSC-TDSGGVRLWDARSGKIVQTLETK----SPVTSAEVSRDGRYITTA-DGSSVKFWDANHF  218 (268)
Q Consensus       159 ~~~~~~-~~d~~i~iwd~~~~~~~~~~~~~----~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~  218 (268)
                      .+++++ ...+.+|+-.+.+......++..    +.+.|++|+|.+-+++.+ +++.|.+|.+..|
T Consensus       449 iLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~hy  514 (514)
T KOG2055|consen  449 ILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLHHY  514 (514)
T ss_pred             hhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeeccC
Confidence            654433 23468999999998888777643    358999999999999877 4689999987643

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.79  E-value=1.1e-17  Score=136.61  Aligned_cols=250  Identities=18%  Similarity=0.253  Sum_probs=168.3

Q ss_pred             eeecCC-CeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCC---------CeEEEeeCccCcEEEEEecCCCcEEEEeeC
Q 024372           12 CHGHSR-PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG---------DWIGTFEGHKGAVWSCCLDANALFSASGSA   81 (268)
Q Consensus        12 ~~~h~~-~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~---------~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~   81 (268)
                      ..=|.. ||..+.|.+.  +.+.||||+.|..|++|.+..+         ++...|..|...|..|.|+|+|.+||||+.
T Consensus         8 i~wH~~~pv~s~dfq~n--~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D   85 (434)
T KOG1009|consen    8 ISWHDHEPVYSVDFQKN--SLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGD   85 (434)
T ss_pred             EEecCCCceEEEEeccC--cccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCC
Confidence            333443 8999999874  3448999999999999965532         356788899999999999999999999999


Q ss_pred             CCcEEEEeCC--------C-----CC---eeeee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCC
Q 024372           82 DFTAKLWDAL--------T-----GD---EKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNS  144 (268)
Q Consensus        82 D~~v~iw~~~--------~-----~~---~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~  144 (268)
                      ++.+.+|...        +     .+   ..... .|.+.+..++|+|++..+++++.|+.+++||+..+. .......|
T Consensus        86 ~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~-l~~~~~dh  164 (434)
T KOG1009|consen   86 GGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQ-LLAILDDH  164 (434)
T ss_pred             CceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccce-eEeecccc
Confidence            9999999865        2     10   11111 377788999999999999999999999999998764 34556678


Q ss_pred             cccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeec-----------CC-------------CCEEEEEECCCCc
Q 024372          145 SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE-----------TK-------------SPVTSAEVSRDGR  200 (268)
Q Consensus       145 ~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-----------~~-------------~~v~~~~~s~~g~  200 (268)
                      ...+..++|.|-++++..-++ |+..+.+++...+.++...           ..             .....+.|+|+|.
T Consensus       165 ~~yvqgvawDpl~qyv~s~s~-dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~  243 (434)
T KOG1009|consen  165 EHYVQGVAWDPLNQYVASKSS-DRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGS  243 (434)
T ss_pred             ccccceeecchhhhhhhhhcc-CcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCc
Confidence            889999999998877655444 4656666654433221111           01             1245677899999


Q ss_pred             EEEEeC-----CCeE-----EEEeCCCc-eeeeEEeCCC------------------CceeeEEcCCCCCEEEeccCCCe
Q 024372          201 YITTAD-----GSSV-----KFWDANHF-GLVKGYNMPC------------------NTESASLEPKLGNIFIAGGEDMW  251 (268)
Q Consensus       201 ~l~~~~-----~~~v-----~~wd~~~~-~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~gs~d~~  251 (268)
                      ++++.+     ++.+     ++++-... ++....+.+.                  ......+..+.+-.|+++..|. 
T Consensus       244 llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~s-  322 (434)
T KOG1009|consen  244 LLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNS-  322 (434)
T ss_pred             EEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecce-
Confidence            887543     2222     34432211 1111111110                  0111122233455677777775 


Q ss_pred             EEEEECCCCcEEeec
Q 024372          252 VHVFDFHTGEQIAIT  266 (268)
Q Consensus       252 i~~wd~~~g~~~~~~  266 (268)
                      |++||.++-+++.+.
T Consensus       323 vyvydtq~~~P~~~v  337 (434)
T KOG1009|consen  323 VYVYDTQTLEPLAVV  337 (434)
T ss_pred             EEEeccccccceEEE
Confidence            999999887777664

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.79  E-value=2.1e-17  Score=140.84  Aligned_cols=205  Identities=24%  Similarity=0.296  Sum_probs=155.7

Q ss_pred             EEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEEECCCC--CEEEEeeCCCeEEEEEC
Q 024372           54 IGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDT--HLLLTGGFEKILRIFDL  131 (268)
Q Consensus        54 ~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~--~~l~s~~~d~~i~~~d~  131 (268)
                      --.++||++.|++++..|.|..||+|+.||+||||.+.++.+++++...+.|+||+|+|.+  .+||++ ....+.+.+.
T Consensus       393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA-~~~~~~ivnp  471 (733)
T KOG0650|consen  393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVA-VGECVLIVNP  471 (733)
T ss_pred             eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEE-ecCceEEeCc
Confidence            3457899999999999999999999999999999999999999999999999999999955  344443 3334444442


Q ss_pred             CCCC------------------C------------------CCeEecCCcccEEEEEEeCCCCcEEEEeeCC--CeEEEE
Q 024372          132 NRPD------------------A------------------PPREVGNSSGSIRTVAWLHSDQTILSSCTDS--GGVRLW  173 (268)
Q Consensus       132 ~~~~------------------~------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d--~~i~iw  173 (268)
                      .-+.                  .                  .......|...|..+.|...|.++.+.+.++  ..|.|.
T Consensus       472 ~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliH  551 (733)
T KOG0650|consen  472 IFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIH  551 (733)
T ss_pred             cccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEE
Confidence            2110                  0                  0001112345678889988888776665543  479999


Q ss_pred             eCCCCceEEeec-CCCCEEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEeCCCCce-eeEEcCCCCCEEEeccCCCe
Q 024372          174 DARSGKIVQTLE-TKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTE-SASLEPKLGNIFIAGGEDMW  251 (268)
Q Consensus       174 d~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~gs~d~~  251 (268)
                      ++...+...-|. .++.+.++.|+|...+++.+..+.||+||+-..++++..-..+... ..++++ .|+-++.|+.|+.
T Consensus       552 QLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp-~GDnli~gs~d~k  630 (733)
T KOG0650|consen  552 QLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHP-NGDNLILGSYDKK  630 (733)
T ss_pred             ecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecC-CCCeEEEecCCCe
Confidence            998776665563 4567999999999999888888899999998887777666555544 445555 6999999999999


Q ss_pred             EEEEECCCC
Q 024372          252 VHVFDFHTG  260 (268)
Q Consensus       252 i~~wd~~~g  260 (268)
                      +..||+.-+
T Consensus       631 ~~WfDldls  639 (733)
T KOG0650|consen  631 MCWFDLDLS  639 (733)
T ss_pred             eEEEEcccC
Confidence            999998643

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.79  E-value=2.9e-17  Score=128.96  Aligned_cols=243  Identities=21%  Similarity=0.235  Sum_probs=174.8

Q ss_pred             eeecCCCeeeEEEecCCCCCcEEEEEeCCC-------CeEEeeCCCC---------CeEEEee-CccCcEEEEEecCCCc
Q 024372           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDS-------SPMLRNGETG---------DWIGTFE-GHKGAVWSCCLDANAL   74 (268)
Q Consensus        12 ~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~-------~i~iw~~~~~---------~~~~~~~-~h~~~V~~~~~~~~~~   74 (268)
                      |.-|.++|+.++-+|.  +...|+++-++-       .+-||.+...         |++..|. .|-+.|.++.|.|++.
T Consensus        59 f~h~agEvw~las~P~--d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~  136 (370)
T KOG1007|consen   59 FFHHAGEVWDLASSPF--DQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD  136 (370)
T ss_pred             hhcCCcceehhhcCCC--CCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence            4468899999999995  556888875532       2357866432         3455554 4556899999999998


Q ss_pred             EEEEeeCCCcEEEEeCCCCCe-eeee------ccCCeEEEEEECC--CCCEEEEeeCCCeEEEEECCCCCCCCeEecCCc
Q 024372           75 FSASGSADFTAKLWDALTGDE-KHSF------EHKHIVRACAFSE--DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSS  145 (268)
Q Consensus        75 ~l~s~s~D~~v~iw~~~~~~~-~~~~------~~~~~v~~v~~~~--~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~  145 (268)
                      .+++-. |..|.+|++..... ...+      ++....++-.|+|  +++.+++. .|+++..||+++..........|.
T Consensus       137 klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHg  214 (370)
T KOG1007|consen  137 KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHG  214 (370)
T ss_pred             eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhc
Confidence            887654 88999999987765 2222      2344567788988  77777765 578999999987654444445577


Q ss_pred             ccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCC-ceEEeecCC-CCEEEEEECCCCc--EEEEeCCCeEEEEeCCCc---
Q 024372          146 GSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG-KIVQTLETK-SPVTSAEVSRDGR--YITTADGSSVKFWDANHF---  218 (268)
Q Consensus       146 ~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~-~~~~~~~~~-~~v~~~~~s~~g~--~l~~~~~~~v~~wd~~~~---  218 (268)
                      ..+..+.|+|.-++++++|++||.|||||+|+- .+++.+..| ..+-++-|+|...  +|.+++|..|.+|-...-   
T Consensus       215 q~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE  294 (370)
T KOG1007|consen  215 QRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSE  294 (370)
T ss_pred             ceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccc
Confidence            789999999999999999999999999999875 467777654 5689999998653  334567888888854210   


Q ss_pred             --------------------------eeeeEEeCCCC-ceeeEEcCCCCCEEEeccCCCeEEEEECC
Q 024372          219 --------------------------GLVKGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (268)
Q Consensus       219 --------------------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~gs~d~~i~~wd~~  258 (268)
                                                +.+.+|.-+.. +..+.+++.+.=.|++=|.||.+.+=++.
T Consensus       295 ~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  295 QQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             cccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence                                      11223433333 34566776666678888999998876664

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=2.1e-17  Score=134.68  Aligned_cols=240  Identities=17%  Similarity=0.150  Sum_probs=180.7

Q ss_pred             eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC------CCeEEEee-CccCcEEEEEecCCCcEEEEeeCCCcE
Q 024372           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET------GDWIGTFE-GHKGAVWSCCLDANALFSASGSADFTA   85 (268)
Q Consensus        13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~------~~~~~~~~-~h~~~V~~~~~~~~~~~l~s~s~D~~v   85 (268)
                      .+|.+.|+++.|+.   +|++|++|+.|..+++|.+..      .+.++... .|...|++++|...+.++.+|+.+++|
T Consensus        53 ~~H~GCiNAlqFS~---N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V  129 (609)
T KOG4227|consen   53 REHTGCINALQFSH---NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV  129 (609)
T ss_pred             hhhccccceeeecc---CCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence            58999999999985   689999999999999998754      35555443 356889999999999999999999999


Q ss_pred             EEEeCCCCCeeeeeccCC---eEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCe--EecCCcccEEEEEEeCCCCcE
Q 024372           86 KLWDALTGDEKHSFEHKH---IVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR--EVGNSSGSIRTVAWLHSDQTI  160 (268)
Q Consensus        86 ~iw~~~~~~~~~~~~~~~---~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~  160 (268)
                      .+-|+++.+.+..+.|..   .|..+..+|-.++|++.+.++.+-+||.+.......  ..-+.......+.|.|..+.+
T Consensus       130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~L  209 (609)
T KOG4227|consen  130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPAL  209 (609)
T ss_pred             EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCcee
Confidence            999999999999888766   799999999999999999999999999875432222  122233456778899999999


Q ss_pred             EEEeeCCCeEEEEeCCCCc-eEEee------cC-CCCEEEEEECCCCcEEEEeCCC-eEEEEeCCCcee-eeEEeCCC--
Q 024372          161 LSSCTDSGGVRLWDARSGK-IVQTL------ET-KSPVTSAEVSRDGRYITTADGS-SVKFWDANHFGL-VKGYNMPC--  228 (268)
Q Consensus       161 ~~~~~~d~~i~iwd~~~~~-~~~~~------~~-~~~v~~~~~s~~g~~l~~~~~~-~v~~wd~~~~~~-~~~~~~~~--  228 (268)
                      +++.+..+.+-+||.|... .+...      +. ...+.+..|+|+|+.+.+-.-+ -=.+||+-..++ +-.+.++.  
T Consensus       210 i~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~G  289 (609)
T KOG4227|consen  210 ILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNG  289 (609)
T ss_pred             EEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCc
Confidence            8888888899999998643 22221      22 2346788999999888765433 345678765433 22333221  


Q ss_pred             -----CceeeEEcCCCCCEEEeccCCCeEEEEEC
Q 024372          229 -----NTESASLEPKLGNIFIAGGEDMWVHVFDF  257 (268)
Q Consensus       229 -----~~~~~~~~~~~~~~~~~gs~d~~i~~wd~  257 (268)
                           ...+.+|.  +++-+++||.+-.|++|.+
T Consensus       290 Y~N~~T~KS~~F~--~D~~v~tGSD~~~i~~Wkl  321 (609)
T KOG4227|consen  290 YCNIKTIKSMTFI--DDYTVATGSDHWGIHIWKL  321 (609)
T ss_pred             ceeeeeeeeeeee--cceeeeccCcccceEEEec
Confidence                 22234443  3555889999999999987

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.79  E-value=9.8e-19  Score=153.84  Aligned_cols=243  Identities=17%  Similarity=0.239  Sum_probs=180.8

Q ss_pred             eeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCC
Q 024372           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL   91 (268)
Q Consensus        12 ~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~   91 (268)
                      +.||...|.|+.|.   ..|.++++|+.|..++||..++++++.+.+||++.+..++.+.++.++|++|.|..|++|.+.
T Consensus       186 LlgH~naVyca~fD---rtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~  262 (1113)
T KOG0644|consen  186 LLGHRNAVYCAIFD---RTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP  262 (1113)
T ss_pred             HHhhhhheeeeeec---cccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence            45999999999997   479999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeeeee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECC-CCCC-C---Ce---------Ee---------------
Q 024372           92 TGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLN-RPDA-P---PR---------EV---------------  141 (268)
Q Consensus        92 ~~~~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~-~~~~-~---~~---------~~---------------  141 (268)
                      ++.++..+ .|...|++++|+|-.    +.+.||++++||.+ .+.. .   ..         ..               
T Consensus       263 ~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~  338 (1113)
T KOG0644|consen  263 DGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDG  338 (1113)
T ss_pred             CCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCc
Confidence            98877765 599999999999965    67899999999976 1100 0   00         00               


Q ss_pred             --cCCcc--------cEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCC-CCEEEEEECCCCcEEE--EeCCC
Q 024372          142 --GNSSG--------SIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYIT--TADGS  208 (268)
Q Consensus       142 --~~~~~--------~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~--~~~~~  208 (268)
                        ..|..        .+..+..+.+...+..+.-.+-.+.+|++.+|...+.+..+ ..+.-+.++|-...++  ++.||
T Consensus       339 ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dg  418 (1113)
T KOG0644|consen  339 EARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDG  418 (1113)
T ss_pred             ccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCC
Confidence              00000        01111111111123333334457888999999888877644 4588899999775543  46789


Q ss_pred             eEEEEeCCCceeeeEEeCCCC-ceeeEEcCCCCCEEEeccCCCeEEEEECCCCcE
Q 024372          209 SVKFWDANHFGLVKGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ  262 (268)
Q Consensus       209 ~v~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~  262 (268)
                      ..-|||+-.+.+++.|..+.. .....|+. +|.-++..-.-+.+++..+..|+.
T Consensus       419 st~iwdi~eg~pik~y~~gh~kl~d~kFSq-dgts~~lsd~hgql~i~g~gqs~s  472 (1113)
T KOG0644|consen  419 STIIWDIWEGIPIKHYFIGHGKLVDGKFSQ-DGTSIALSDDHGQLYILGTGQSKS  472 (1113)
T ss_pred             ceEeeecccCCcceeeecccceeeccccCC-CCceEecCCCCCceEEeccCCCcc
Confidence            999999988888888876533 33344444 688888877778888887655543

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.78  E-value=3.7e-17  Score=142.93  Aligned_cols=219  Identities=18%  Similarity=0.143  Sum_probs=147.0

Q ss_pred             CCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCC---CcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCE
Q 024372           40 DSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD---FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHL  116 (268)
Q Consensus        40 d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D---~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~  116 (268)
                      +.++.+||.... ....+..|...+...+|+||++.++..+.+   ..|++||+.++...............+|+||++.
T Consensus       183 ~~~i~i~d~dg~-~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~  261 (429)
T PRK01742        183 PYEVRVADYDGF-NQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSR  261 (429)
T ss_pred             eEEEEEECCCCC-CceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCE
Confidence            568889997544 355677788899999999999999887654   4799999988764333222333446889999998


Q ss_pred             EEEee-CCCeEEEE--ECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCC-ceEEeecCCCCEEE
Q 024372          117 LLTGG-FEKILRIF--DLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG-KIVQTLETKSPVTS  192 (268)
Q Consensus       117 l~s~~-~d~~i~~~--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~-~~~~~~~~~~~v~~  192 (268)
                      |+.++ .++.+.+|  |+..+.  ......+...+....|+|++..++.++..++..+||++... .....+....  ..
T Consensus       262 La~~~~~~g~~~Iy~~d~~~~~--~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~  337 (429)
T PRK01742        262 LAFASSKDGVLNIYVMGANGGT--PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YS  337 (429)
T ss_pred             EEEEEecCCcEEEEEEECCCCC--eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CC
Confidence            88764 67776666  554332  33444455567788999998877777666688888876432 2223333222  45


Q ss_pred             EEECCCCcEEEEeCCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEEC--CCCcEEee
Q 024372          193 AEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDF--HTGEQIAI  265 (268)
Q Consensus       193 ~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~--~~g~~~~~  265 (268)
                      ..|+|||++++......+.+||+.++....... ........++| +|++++.++.++.+++|++  .+|+.+..
T Consensus       338 ~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~-~~~~~~~~~sP-dG~~i~~~s~~g~~~~l~~~~~~G~~~~~  410 (429)
T PRK01742        338 AQISADGKTLVMINGDNVVKQDLTSGSTEVLSS-TFLDESPSISP-NGIMIIYSSTQGLGKVLQLVSADGRFKAR  410 (429)
T ss_pred             ccCCCCCCEEEEEcCCCEEEEECCCCCeEEecC-CCCCCCceECC-CCCEEEEEEcCCCceEEEEEECCCCceEE
Confidence            789999999876544556679998765432211 11234556777 6999999988887777764  24655443

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.77  E-value=2e-16  Score=124.46  Aligned_cols=240  Identities=17%  Similarity=0.254  Sum_probs=174.7

Q ss_pred             CeeeEEEecCCCCCcEEEEEeCC----CCeEEe--eCCCCCeEEEee-CccCcEEEEEecCCC-----cEEEEeeCCCcE
Q 024372           18 PVVDLFYSPITPDGFFLVSASKD----SSPMLR--NGETGDWIGTFE-GHKGAVWSCCLDANA-----LFSASGSADFTA   85 (268)
Q Consensus        18 ~v~~~~f~~~~~dg~~l~s~s~d----~~i~iw--~~~~~~~~~~~~-~h~~~V~~~~~~~~~-----~~l~s~s~D~~v   85 (268)
                      ++.+++|+.....+.+||.||.-    ..|+|-  +..+++.+..-. .|..++..+.|.|+.     ++|||.+.  .+
T Consensus        46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D--~L  123 (364)
T KOG0290|consen   46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSSD--FL  123 (364)
T ss_pred             ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcccC--eE
Confidence            56788887654457789988753    344543  555666654332 488999999999886     35677643  89


Q ss_pred             EEEeCCCCCeeee----e------ccCCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCC--CCeEecCCcccEEEEE
Q 024372           86 KLWDALTGDEKHS----F------EHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDA--PPREVGNSSGSIRTVA  152 (268)
Q Consensus        86 ~iw~~~~~~~~~~----~------~~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~--~~~~~~~~~~~v~~~~  152 (268)
                      |+|.+........    +      .+..++++..|+. +.+++.+.+-|.+..+||++++..  ...+...|..+|..++
T Consensus       124 RlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIa  203 (364)
T KOG0290|consen  124 RLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIA  203 (364)
T ss_pred             EEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEE
Confidence            9999874221111    1      2445788888887 788999999999999999987522  2344456888999999


Q ss_pred             EeCCCCcEEEEeeCCCeEEEEeCCCCceEEe-ec---CCCCEEEEEECCCC-cEEEE--eCCCeEEEEeCCCc-eeeeEE
Q 024372          153 WLHSDQTILSSCTDSGGVRLWDARSGKIVQT-LE---TKSPVTSAEVSRDG-RYITT--ADGSSVKFWDANHF-GLVKGY  224 (268)
Q Consensus       153 ~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~-~~---~~~~v~~~~~s~~g-~~l~~--~~~~~v~~wd~~~~-~~~~~~  224 (268)
                      |...+..+|++.+.||.+|+||+|..+.-.. ++   .+.+...++++++. +++++  -+...|.+-|+|.- ..+..+
T Consensus       204 f~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L  283 (364)
T KOG0290|consen  204 FLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARL  283 (364)
T ss_pred             eccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehh
Confidence            9987778899999999999999998654322 22   25678889998865 55654  35678999999863 344444


Q ss_pred             eCC-CCceeeEEcCCCCCEEEeccCCCeEEEEECCC
Q 024372          225 NMP-CNTESASLEPKLGNIFIAGGEDMWVHVFDFHT  259 (268)
Q Consensus       225 ~~~-~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~  259 (268)
                      ..+ ..+..+.+.|.+...+.+||.|..+.+||+.+
T Consensus       284 ~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q  319 (364)
T KOG0290|consen  284 RNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ  319 (364)
T ss_pred             hcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence            433 34667888898899999999999999999864

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.76  E-value=3.8e-17  Score=141.28  Aligned_cols=202  Identities=22%  Similarity=0.283  Sum_probs=153.1

Q ss_pred             eeecCCCeeeEEEecCCCCCcEEEEEeCCCC-----eEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEE
Q 024372           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSS-----PMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAK   86 (268)
Q Consensus        12 ~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~-----i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~   86 (268)
                      ++||--+|.+++.+|   +|+++|++.....     |++|+...-..++.+.+|.--|..++|+||+++|++.|+|.++.
T Consensus       521 LYGHGyEv~~l~~s~---~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~s  597 (764)
T KOG1063|consen  521 LYGHGYEVYALAISP---TGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVS  597 (764)
T ss_pred             hccCceeEEEEEecC---CCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEE
Confidence            469999999999985   8999999977654     47898887777778999999999999999999999999999999


Q ss_pred             EEeCCCCCeee-----eeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCC--CCCCe-EecCCcccEEEEEEeCCCC
Q 024372           87 LWDALTGDEKH-----SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRP--DAPPR-EVGNSSGSIRTVAWLHSDQ  158 (268)
Q Consensus        87 iw~~~~~~~~~-----~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~--~~~~~-~~~~~~~~v~~~~~~~~~~  158 (268)
                      +|.........     .-.|...|..+.|+|++..++|+|.|+++++|.....  +...+ ....+..+|+.+++.|-..
T Consensus       598 l~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~  677 (764)
T KOG1063|consen  598 LYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDH  677 (764)
T ss_pred             eeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeecccc
Confidence            99985443211     1247888999999999999999999999999987654  22222 2234567899999876443


Q ss_pred             c----EEEEeeCCCeEEEEeCCC-CceE----Eee--------cCCCCEEEEEECCCC-----------cEEEEeCCCeE
Q 024372          159 T----ILSSCTDSGGVRLWDARS-GKIV----QTL--------ETKSPVTSAEVSRDG-----------RYITTADGSSV  210 (268)
Q Consensus       159 ~----~~~~~~~d~~i~iwd~~~-~~~~----~~~--------~~~~~v~~~~~s~~g-----------~~l~~~~~~~v  210 (268)
                      .    +++.|...|.|.+|.... .++.    ..+        .+...|+.+.|.|.-           ++.++++|..+
T Consensus       678 ~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~v  757 (764)
T KOG1063|consen  678 NEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESV  757 (764)
T ss_pred             ccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeeccccee
Confidence            3    788999999999998541 1111    111        112358889998751           22346788899


Q ss_pred             EEEeCC
Q 024372          211 KFWDAN  216 (268)
Q Consensus       211 ~~wd~~  216 (268)
                      |++++.
T Consensus       758 ri~nv~  763 (764)
T KOG1063|consen  758 RIFNVD  763 (764)
T ss_pred             EEeecc
Confidence            998753

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.75  E-value=1.2e-14  Score=123.17  Aligned_cols=243  Identities=16%  Similarity=0.169  Sum_probs=157.3

Q ss_pred             cCCCeeeEEEecCCCCCcEEEEEe-CCCCeEEeeCC-CCCe--EEEeeCccCcEEEEEecCCCcEEEEee-CCCcEEEEe
Q 024372           15 HSRPVVDLFYSPITPDGFFLVSAS-KDSSPMLRNGE-TGDW--IGTFEGHKGAVWSCCLDANALFSASGS-ADFTAKLWD   89 (268)
Q Consensus        15 h~~~v~~~~f~~~~~dg~~l~s~s-~d~~i~iw~~~-~~~~--~~~~~~h~~~V~~~~~~~~~~~l~s~s-~D~~v~iw~   89 (268)
                      +.+....++++|   +|++|++++ .++.+.+|+.. ++++  +.... ..+....++++|+++++++++ .++.+.+|+
T Consensus        33 ~~~~~~~l~~sp---d~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~  108 (330)
T PRK11028         33 VPGQVQPMVISP---DKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSP  108 (330)
T ss_pred             cCCCCccEEECC---CCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEE
Confidence            334566778874   888887664 57888889886 4443  23222 223456789999999887766 488999999


Q ss_pred             CCCCC----eeeeeccCCeEEEEEECCCCCEEEEee-CCCeEEEEECCCCCCCC----e-EecCCcccEEEEEEeCCCCc
Q 024372           90 ALTGD----EKHSFEHKHIVRACAFSEDTHLLLTGG-FEKILRIFDLNRPDAPP----R-EVGNSSGSIRTVAWLHSDQT  159 (268)
Q Consensus        90 ~~~~~----~~~~~~~~~~v~~v~~~~~~~~l~s~~-~d~~i~~~d~~~~~~~~----~-~~~~~~~~v~~~~~~~~~~~  159 (268)
                      +.+..    ....+........+.++|+++.+++++ .++.|.+||++......    . ...........+.|.|++..
T Consensus       109 ~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~  188 (330)
T PRK11028        109 LDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQY  188 (330)
T ss_pred             ECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCE
Confidence            86432    222233333456788999998886554 66999999987532111    0 01111223467888998888


Q ss_pred             EEEEeeCCCeEEEEeCCC--C--ceEEeecCC-------CCEEEEEECCCCcEEEEe--CCCeEEEEeCCCce----eee
Q 024372          160 ILSSCTDSGGVRLWDARS--G--KIVQTLETK-------SPVTSAEVSRDGRYITTA--DGSSVKFWDANHFG----LVK  222 (268)
Q Consensus       160 ~~~~~~~d~~i~iwd~~~--~--~~~~~~~~~-------~~v~~~~~s~~g~~l~~~--~~~~v~~wd~~~~~----~~~  222 (268)
                      ++++...+++|.+||+..  +  +.++.+...       .....+.++|+|+++.++  .++.|.+|++....    .+.
T Consensus       189 lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~  268 (330)
T PRK11028        189 AYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEG  268 (330)
T ss_pred             EEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeE
Confidence            877776679999999973  3  334443211       113468899999988765  35799999985432    233


Q ss_pred             EEeCCCCceeeEEcCCCCCEEEecc-CCCeEEEEECC--CCcE
Q 024372          223 GYNMPCNTESASLEPKLGNIFIAGG-EDMWVHVFDFH--TGEQ  262 (268)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~gs-~d~~i~~wd~~--~g~~  262 (268)
                      .......+..+.+++ +|++++++. .++.|.+|++.  +|..
T Consensus       269 ~~~~~~~p~~~~~~~-dg~~l~va~~~~~~v~v~~~~~~~g~l  310 (330)
T PRK11028        269 HQPTETQPRGFNIDH-SGKYLIAAGQKSHHISVYEIDGETGLL  310 (330)
T ss_pred             EEeccccCCceEECC-CCCEEEEEEccCCcEEEEEEcCCCCcE
Confidence            333333445667777 577777655 48899999863  4543

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.73  E-value=1.6e-15  Score=136.89  Aligned_cols=244  Identities=16%  Similarity=0.258  Sum_probs=161.1

Q ss_pred             CCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCcc---CcEEEEEec--CCCcEEEEeeCCCcEEEEeC
Q 024372           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHK---GAVWSCCLD--ANALFSASGSADFTAKLWDA   90 (268)
Q Consensus        16 ~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~---~~V~~~~~~--~~~~~l~s~s~D~~v~iw~~   90 (268)
                      ..+-..+.|+|..|   .++++..-..|+|||-+.++.+..|..+.   ..|..+.+-  .|..++.+|+.||.||||+-
T Consensus      1064 ~~~pk~~~~hpf~p---~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~ 1140 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEP---QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKD 1140 (1387)
T ss_pred             CCCCceeeecCCCc---eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecc
Confidence            33456788888766   67777666788999999999988887553   457777764  34467889999999999965


Q ss_pred             CCCC-----eeeeec--------cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCC
Q 024372           91 LTGD-----EKHSFE--------HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSD  157 (268)
Q Consensus        91 ~~~~-----~~~~~~--------~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~  157 (268)
                      ....     .+..+.        ..+.--.+.|..+...|++++.-+.|++||...+.............++.+.-....
T Consensus      1141 y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~ 1220 (1387)
T KOG1517|consen 1141 YADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVH 1220 (1387)
T ss_pred             cccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccC
Confidence            4332     222221        011113356777655666666689999999876543222222334456666544455


Q ss_pred             CcEEEEeeCCCeEEEEeCCCCce---EEeec-CC--CCEEEEEECCCC--cEEEEeCCCeEEEEeCCCceeeeEEeC---
Q 024372          158 QTILSSCTDSGGVRLWDARSGKI---VQTLE-TK--SPVTSAEVSRDG--RYITTADGSSVKFWDANHFGLVKGYNM---  226 (268)
Q Consensus       158 ~~~~~~~~~d~~i~iwd~~~~~~---~~~~~-~~--~~v~~~~~s~~g--~~l~~~~~~~v~~wd~~~~~~~~~~~~---  226 (268)
                      ++++++|..||.||+||.|....   +.... +.  .+|..+.+.++|  .+++++.+|.|++||+|..........   
T Consensus      1221 gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~ 1300 (1387)
T KOG1517|consen 1221 GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAH 1300 (1387)
T ss_pred             CceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeec
Confidence            67888999999999999987532   33332 32  338888888765  456667899999999986322221221   


Q ss_pred             ---CCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEee
Q 024372          227 ---PCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       227 ---~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~  265 (268)
                         .........+. ....+++|+. +.|.+|++. |+++.+
T Consensus      1301 ~~yGs~lTal~VH~-hapiiAsGs~-q~ikIy~~~-G~~l~~ 1339 (1387)
T KOG1517|consen 1301 WEYGSALTALTVHE-HAPIIASGSA-QLIKIYSLS-GEQLNI 1339 (1387)
T ss_pred             cccCccceeeeecc-CCCeeeecCc-ceEEEEecC-hhhhcc
Confidence               11234444444 5888999988 999999985 776654

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.72  E-value=9.1e-17  Score=136.12  Aligned_cols=213  Identities=22%  Similarity=0.262  Sum_probs=143.9

Q ss_pred             ceeeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeC------CCC----CeEEEeeCccCcEEEEEecCCC
Q 024372            4 RKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNG------ETG----DWIGTFEGHKGAVWSCCLDANA   73 (268)
Q Consensus         4 ~~~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~------~~~----~~~~~~~~h~~~V~~~~~~~~~   73 (268)
                      .+++....|++|.+||.+++..+   .+.++.+|+.|++|+.|++      .+.    .+...|.||++.|+.+++++..
T Consensus       332 ~~~epi~tfraH~gPVl~v~v~~---n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~  408 (577)
T KOG0642|consen  332 KDVEPILTFRAHEGPVLCVVVPS---NGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK  408 (577)
T ss_pred             cceeeeEEEecccCceEEEEecC---CceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc
Confidence            46777888899999999999974   7899999999999999933      221    3567889999999999999999


Q ss_pred             cEEEEeeCCCcEEEEeCCCCCeeeeecc-C--CeEEEEEECCCC-CEEEEeeCCCeEEEEECCCCCCCCeEec-----C-
Q 024372           74 LFSASGSADFTAKLWDALTGDEKHSFEH-K--HIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAPPREVG-----N-  143 (268)
Q Consensus        74 ~~l~s~s~D~~v~iw~~~~~~~~~~~~~-~--~~v~~v~~~~~~-~~l~s~~~d~~i~~~d~~~~~~~~~~~~-----~-  143 (268)
                      .+|++++.||++|+|+.....+ .++.- .  ..-.++.+-... ...++...-+.--++++.... ....+.     . 
T Consensus       409 ~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s-~~~~~~s~~~~~~  486 (577)
T KOG0642|consen  409 DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVS-DLLIFESSASPGP  486 (577)
T ss_pred             cceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhh-heeeccccCCCcc
Confidence            9999999999999999876655 33321 1  112233332211 111111111111122222111 001110     0 


Q ss_pred             -CcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeec-CCCCEEEEEECCCCcEEEEe-CCCeEEEEeCCCcee
Q 024372          144 -SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGL  220 (268)
Q Consensus       144 -~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~  220 (268)
                       ....+..+.+.|..+ +..++-+|+.|+++|..+++.++... +...+.++++.|+|-+|+++ .|+.+++|.+..-.+
T Consensus       487 ~~~~~in~vVs~~~~~-~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~  565 (577)
T KOG0642|consen  487 RRYPQINKVVSHPTAD-ITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTC  565 (577)
T ss_pred             cccCccceEEecCCCC-eeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchhe
Confidence             112345556556554 55566788999999999999988765 44568999999999998775 689999999865444


Q ss_pred             ee
Q 024372          221 VK  222 (268)
Q Consensus       221 ~~  222 (268)
                      +.
T Consensus       566 ~~  567 (577)
T KOG0642|consen  566 VL  567 (577)
T ss_pred             ee
Confidence            43

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.72  E-value=2.1e-15  Score=118.67  Aligned_cols=197  Identities=19%  Similarity=0.218  Sum_probs=147.2

Q ss_pred             ecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCe-EEEe-----eCccCcEEEEEecC--CCcEEEEeeCCCcE
Q 024372           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW-IGTF-----EGHKGAVWSCCLDA--NALFSASGSADFTA   85 (268)
Q Consensus        14 ~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~-~~~~-----~~h~~~V~~~~~~~--~~~~l~s~s~D~~v   85 (268)
                      .|-+.|.++.|.|   ++..||+-. |..|.+|+...+.. +..+     .+|+....+-+|+|  ++..+++. .|+++
T Consensus       121 eavg~i~cvew~P---ns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl  195 (370)
T KOG1007|consen  121 EAVGKINCVEWEP---NSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTL  195 (370)
T ss_pred             HHhCceeeEEEcC---CCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcE
Confidence            3455899999997   666777554 88999999887653 3333     23566677778888  45566554 58999


Q ss_pred             EEEeCCCCCeeeeec--cCCeEEEEEECCCCC-EEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEE
Q 024372           86 KLWDALTGDEKHSFE--HKHIVRACAFSEDTH-LLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILS  162 (268)
Q Consensus        86 ~iw~~~~~~~~~~~~--~~~~v~~v~~~~~~~-~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  162 (268)
                      +.||+.+..+...++  |...|+.+.|+|+.+ +|++|+.|+.+++||.+..+.+.++...|..+|.++.|+|....++.
T Consensus       196 ~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiL  275 (370)
T KOG1007|consen  196 QFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLIL  275 (370)
T ss_pred             EEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEE
Confidence            999999888877775  778899999999765 78899999999999999888888888889999999999998888888


Q ss_pred             EeeCCCeEEEEeCCCCc---e--------------------------EEeec-CCCCEEEEEECCCCcEEEE--eCCCeE
Q 024372          163 SCTDSGGVRLWDARSGK---I--------------------------VQTLE-TKSPVTSAEVSRDGRYITT--ADGSSV  210 (268)
Q Consensus       163 ~~~~d~~i~iwd~~~~~---~--------------------------~~~~~-~~~~v~~~~~s~~g~~l~~--~~~~~v  210 (268)
                      +++.|..|.+|...+-.   .                          +.++. +...|.+++||.-.-.+++  +-||.+
T Consensus       276 s~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRv  355 (370)
T KOG1007|consen  276 SGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRV  355 (370)
T ss_pred             ecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceE
Confidence            88888999999653211   0                          11221 2235888888876655543  356766


Q ss_pred             EEEeC
Q 024372          211 KFWDA  215 (268)
Q Consensus       211 ~~wd~  215 (268)
                      .|=.+
T Consensus       356 iIs~V  360 (370)
T KOG1007|consen  356 IISSV  360 (370)
T ss_pred             EeecC
Confidence            66443

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.71  E-value=4.6e-16  Score=127.77  Aligned_cols=191  Identities=21%  Similarity=0.204  Sum_probs=141.7

Q ss_pred             eeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeee
Q 024372           20 VDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF   99 (268)
Q Consensus        20 ~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~   99 (268)
                      ..++|++   +|..|++|+.||++|||+.-....+.....|.+.|.++.|+||+++|++-+.| ..+||+..++......
T Consensus       148 k~vaf~~---~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~  223 (398)
T KOG0771|consen  148 KVVAFNG---DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK  223 (398)
T ss_pred             eEEEEcC---CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence            5678874   88999999999999999977777777788899999999999999999999999 9999999998665544


Q ss_pred             c---cCCeEEEEEECCCC-----CEEEEeeCCCeEEEEECCCCCC----CCeEecCCcccEEEEEEeCCCCcEEEEeeCC
Q 024372          100 E---HKHIVRACAFSEDT-----HLLLTGGFEKILRIFDLNRPDA----PPREVGNSSGSIRTVAWLHSDQTILSSCTDS  167 (268)
Q Consensus       100 ~---~~~~v~~v~~~~~~-----~~l~s~~~d~~i~~~d~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d  167 (268)
                      .   .......|.|+.++     .+++.-..-+.++.|++.....    +.+........+++++.++++ .+++.|+-|
T Consensus       224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dG-kf~AlGT~d  302 (398)
T KOG0771|consen  224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDG-KFLALGTMD  302 (398)
T ss_pred             CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCC-cEEEEeccC
Confidence            3   22335567787766     3333344445667666532221    122222223368899987765 566777888


Q ss_pred             CeEEEEeCCCCceEEeec--CCCCEEEEEECCCCcEEEE-eCCCeEEEEeC
Q 024372          168 GGVRLWDARSGKIVQTLE--TKSPVTSAEVSRDGRYITT-ADGSSVKFWDA  215 (268)
Q Consensus       168 ~~i~iwd~~~~~~~~~~~--~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~  215 (268)
                      |.|-|+++.+-+.++..+  |...|..+.|+|+.+++++ +.+.+..+..+
T Consensus       303 GsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l  353 (398)
T KOG0771|consen  303 GSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKL  353 (398)
T ss_pred             CcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEE
Confidence            999999999988888775  3456999999999998865 55666666554

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.71  E-value=5.3e-14  Score=119.15  Aligned_cols=222  Identities=13%  Similarity=0.195  Sum_probs=147.0

Q ss_pred             EEEeCCCCeEEeeCCC-CC--eEEEeeCccCcEEEEEecCCCcEEEEe-eCCCcEEEEeCCC-CCe--eeeeccCCeEEE
Q 024372           35 VSASKDSSPMLRNGET-GD--WIGTFEGHKGAVWSCCLDANALFSASG-SADFTAKLWDALT-GDE--KHSFEHKHIVRA  107 (268)
Q Consensus        35 ~s~s~d~~i~iw~~~~-~~--~~~~~~~h~~~V~~~~~~~~~~~l~s~-s~D~~v~iw~~~~-~~~--~~~~~~~~~v~~  107 (268)
                      ++...|+.|.+|++.+ ++  ++.++. +.+....++++|++++|+.+ ..++.|.+|++.. +..  ............
T Consensus         6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~   84 (330)
T PRK11028          6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTH   84 (330)
T ss_pred             EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceE
Confidence            3457799999999964 44  556665 33456678999999987654 4588999999863 322  222233334567


Q ss_pred             EEECCCCCEEEEeeC-CCeEEEEECCCCCCCC---eEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEE-
Q 024372          108 CAFSEDTHLLLTGGF-EKILRIFDLNRPDAPP---REVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQ-  182 (268)
Q Consensus       108 v~~~~~~~~l~s~~~-d~~i~~~d~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~-  182 (268)
                      +.++|+++.+++++. ++.+.+|+++......   .... .......++++|++..+++++..++.|.+||+.+...+. 
T Consensus        85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~  163 (330)
T PRK11028         85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA  163 (330)
T ss_pred             EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence            999999998888764 7889999986432111   1111 112345677889888888888888999999997633221 


Q ss_pred             ------eecCCCCEEEEEECCCCcEEEEe--CCCeEEEEeCCC----ceeeeEEeC-CC------CceeeEEcCCCCCEE
Q 024372          183 ------TLETKSPVTSAEVSRDGRYITTA--DGSSVKFWDANH----FGLVKGYNM-PC------NTESASLEPKLGNIF  243 (268)
Q Consensus       183 ------~~~~~~~v~~~~~s~~g~~l~~~--~~~~v~~wd~~~----~~~~~~~~~-~~------~~~~~~~~~~~~~~~  243 (268)
                            ..........++|+|+|+++.+.  .++.|.+||+..    .+.+..+.. +.      ....+.++| +++++
T Consensus       164 ~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p-dg~~l  242 (330)
T PRK11028        164 QEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP-DGRHL  242 (330)
T ss_pred             cCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC-CCCEE
Confidence                  12223346789999999987554  378999999863    233433322 11      111355666 68877


Q ss_pred             Eecc-CCCeEEEEECCC
Q 024372          244 IAGG-EDMWVHVFDFHT  259 (268)
Q Consensus       244 ~~gs-~d~~i~~wd~~~  259 (268)
                      +++. .++.|.+|++.+
T Consensus       243 yv~~~~~~~I~v~~i~~  259 (330)
T PRK11028        243 YACDRTASLISVFSVSE  259 (330)
T ss_pred             EEecCCCCeEEEEEEeC
Confidence            7764 478899999854

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.70  E-value=6.6e-15  Score=128.83  Aligned_cols=217  Identities=16%  Similarity=0.133  Sum_probs=142.6

Q ss_pred             cEEeeecCCCeeeEEEecCCCCCcEEEEEeCCC---CeEEeeCCCCCe--EEEeeCccCcEEEEEecCCCcEEEEee-CC
Q 024372            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDS---SPMLRNGETGDW--IGTFEGHKGAVWSCCLDANALFSASGS-AD   82 (268)
Q Consensus         9 ~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~---~i~iw~~~~~~~--~~~~~~h~~~V~~~~~~~~~~~l~s~s-~D   82 (268)
                      +..+.+|..++.+..|+|   ||++|+.++.+.   +|.+||+.+++.  +..+.+|.   ..++|+||++.|+.++ .+
T Consensus       196 ~~~lt~~~~~v~~p~wSP---DG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~---~~~~wSPDG~~La~~~~~~  269 (429)
T PRK01742        196 QFIVNRSSQPLMSPAWSP---DGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHN---GAPAFSPDGSRLAFASSKD  269 (429)
T ss_pred             ceEeccCCCccccceEcC---CCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCcc---CceeECCCCCEEEEEEecC
Confidence            455667888999999985   999999887653   588999988853  44445543   3578999999887654 68


Q ss_pred             CcEEEE--eCCCCCeeeeeccCCeEEEEEECCCCCEEEEee-CCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCc
Q 024372           83 FTAKLW--DALTGDEKHSFEHKHIVRACAFSEDTHLLLTGG-FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQT  159 (268)
Q Consensus        83 ~~v~iw--~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~-~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  159 (268)
                      +...||  |+.++.......+...+....|+||++.++.++ .++..++|+++......... .+.+  ....|+|++..
T Consensus       270 g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~  346 (429)
T PRK01742        270 GVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKT  346 (429)
T ss_pred             CcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCE
Confidence            876665  666665544434555677899999999776554 57788888765432222333 2222  34678898887


Q ss_pred             EEEEeeCCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEE-eCCCeEEEEeCC--CceeeeEEeCCCC-ceeeEE
Q 024372          160 ILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDAN--HFGLVKGYNMPCN-TESASL  235 (268)
Q Consensus       160 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~--~~~~~~~~~~~~~-~~~~~~  235 (268)
                      ++.++. + .+.+||+.+++....... .......|+|||++++. +.++.+++|++.  +++.++.+..+.. ....+|
T Consensus       347 ia~~~~-~-~i~~~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~w  423 (429)
T PRK01742        347 LVMING-D-NVVKQDLTSGSTEVLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAW  423 (429)
T ss_pred             EEEEcC-C-CEEEEECCCCCeEEecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCccc
Confidence            665544 3 466699998876543322 22356789999998875 456666766642  3445555543332 344555


Q ss_pred             cC
Q 024372          236 EP  237 (268)
Q Consensus       236 ~~  237 (268)
                      +|
T Consensus       424 sp  425 (429)
T PRK01742        424 SP  425 (429)
T ss_pred             CC
Confidence            54

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=1.2e-14  Score=129.05  Aligned_cols=256  Identities=20%  Similarity=0.314  Sum_probs=183.8

Q ss_pred             CCcceeeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCc---EEE
Q 024372            1 MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANAL---FSA   77 (268)
Q Consensus         1 ~~~~~~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~---~l~   77 (268)
                      ||+.+..+|..+.|-+.--....|+   +|+++++.. .+-.|+||...+|+++..+.+|.+++..+.+.|...   ++.
T Consensus         1 ~~~e~~~~~~~lgg~n~~~~~avfS---nD~k~l~~~-~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~   76 (792)
T KOG1963|consen    1 MDRESGGKPALLGGRNGNKSPAVFS---NDAKFLFLC-TGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLI   76 (792)
T ss_pred             Cccccccceeeeccccceecccccc---cCCcEEEEe-eCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEE
Confidence            6777888888776655555566676   588888754 556789999999999999999999999999876543   566


Q ss_pred             EeeCCCcEEEEeCCCCCeeee-----------------------------------------------------------
Q 024372           78 SGSADFTAKLWDALTGDEKHS-----------------------------------------------------------   98 (268)
Q Consensus        78 s~s~D~~v~iw~~~~~~~~~~-----------------------------------------------------------   98 (268)
                      +++.||+|++||...+..+.+                                                           
T Consensus        77 ~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~  156 (792)
T KOG1963|consen   77 VCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDF  156 (792)
T ss_pred             EEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhh
Confidence            899999999999732110000                                                           


Q ss_pred             ---------------------------------------------eccCCeEEEEEECCCCCEEEEeeCCCeEEEEE-CC
Q 024372           99 ---------------------------------------------FEHKHIVRACAFSEDTHLLLTGGFEKILRIFD-LN  132 (268)
Q Consensus        99 ---------------------------------------------~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d-~~  132 (268)
                                                                   ..|...+++.++||++.++++|..||.|.+|. ..
T Consensus       157 ~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~  236 (792)
T KOG1963|consen  157 LKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFG  236 (792)
T ss_pred             hhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccc
Confidence                                                         01233467889999999999999999999994 33


Q ss_pred             --CCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeec-CCCCEEEEEECCCCcEEE-EeCCC
Q 024372          133 --RPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYIT-TADGS  208 (268)
Q Consensus       133 --~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~-~~~~~  208 (268)
                        ......+.+..|..+|.+++|++++.+++++| ..+-+.+|.+.+++ .+.++ ..+++..+.++||+.+.+ .-+|.
T Consensus       237 ~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG-~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DN  314 (792)
T KOG1963|consen  237 SSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGG-REGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDN  314 (792)
T ss_pred             cccccccceEEEecccccceeEEecCCceEeecc-cceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCc
Confidence              22344567778888999999999988777655 55999999999988 33333 467899999999998765 44677


Q ss_pred             eEEEEeCCCcee---eeEEeCC--------C-CceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEE
Q 024372          209 SVKFWDANHFGL---VKGYNMP--------C-NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (268)
Q Consensus       209 ~v~~wd~~~~~~---~~~~~~~--------~-~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~  263 (268)
                      .|.+-..-+...   +.++...        . -...+++.|. -..++-.+..+.|.+||+.+.+.+
T Consensus       315 qI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr-~~~~vln~~~g~vQ~ydl~td~~i  380 (792)
T KOG1963|consen  315 QIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPR-TNSLVLNGHPGHVQFYDLYTDSTI  380 (792)
T ss_pred             eEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCC-CCceeecCCCceEEEEecccccee
Confidence            777665533322   3332222        1 1233455563 455677788888999998765544

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=2.2e-16  Score=133.64  Aligned_cols=163  Identities=20%  Similarity=0.346  Sum_probs=129.0

Q ss_pred             eEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeec--cCCeEEEEEECC--CCCEEEEeeCCCeEEE
Q 024372           53 WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE--HKHIVRACAFSE--DTHLLLTGGFEKILRI  128 (268)
Q Consensus        53 ~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~--~~~~v~~v~~~~--~~~~l~s~~~d~~i~~  128 (268)
                      +.+.|.||++-|.++.|+.+|.+|+|||.|-.+.|||....+.++.+.  |..-|.++.|-|  +..++++|..|..|++
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l  121 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL  121 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence            345788999999999999999999999999999999999888888775  777899999988  6779999999999999


Q ss_pred             EECCC---------CCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCc-eEE------ee----cCCC
Q 024372          129 FDLNR---------PDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK-IVQ------TL----ETKS  188 (268)
Q Consensus       129 ~d~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~-~~~------~~----~~~~  188 (268)
                      ||+..         ..........|...|..++..|.+++.+.++++||+|+-+|+|.-. |-.      .+    ..--
T Consensus       122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li  201 (758)
T KOG1310|consen  122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI  201 (758)
T ss_pred             EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence            99874         1222334455677788888889999999999999999999998621 111      11    0113


Q ss_pred             CEEEEEECCCCc-EEEE-eCCCeEEEEeC
Q 024372          189 PVTSAEVSRDGR-YITT-ADGSSVKFWDA  215 (268)
Q Consensus       189 ~v~~~~~s~~g~-~l~~-~~~~~v~~wd~  215 (268)
                      ...+++++|... +++. +++-.+++||.
T Consensus       202 elk~ltisp~rp~~laVGgsdpfarLYD~  230 (758)
T KOG1310|consen  202 ELKCLTISPSRPYYLAVGGSDPFARLYDR  230 (758)
T ss_pred             eeeeeeecCCCCceEEecCCCchhhhhhh
Confidence            467999999875 4444 56778999994

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.70  E-value=6.1e-16  Score=133.07  Aligned_cols=205  Identities=23%  Similarity=0.238  Sum_probs=150.9

Q ss_pred             EeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCC---Ce--EEEeeCccC-cEEEEEecCCCcEEEEeeCCCc
Q 024372           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG---DW--IGTFEGHKG-AVWSCCLDANALFSASGSADFT   84 (268)
Q Consensus        11 ~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~---~~--~~~~~~h~~-~V~~~~~~~~~~~l~s~s~D~~   84 (268)
                      .+.+|.+-|+++.|+|.. | .+||+||+|..++||.+..|   ++  ....-+|+. .|.++.|+|...-+...+..++
T Consensus        74 ~l~~H~d~VtDl~FspF~-D-~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~  151 (1012)
T KOG1445|consen   74 ILAAHGDQVTDLGFSPFA-D-ELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGS  151 (1012)
T ss_pred             eeecccceeeccCccccc-h-hhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCce
Confidence            467999999999999975 4 48999999999999987744   11  111224544 6788899987654444456789


Q ss_pred             EEEEeCCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCccc-EEEEEEeCCCCcEEE
Q 024372           85 AKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGS-IRTVAWLHSDQTILS  162 (268)
Q Consensus        85 v~iw~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~  162 (268)
                      ++|||+.+++....+. |.+.|.+..|+.||++|++.+.|++|++||.+..-..++....|.+. -.-+.|.-.-..+++
T Consensus       152 v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rlis  231 (1012)
T KOG1445|consen  152 VYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERLIS  231 (1012)
T ss_pred             EEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhhhh
Confidence            9999999998877764 89999999999999999999999999999988654445544445432 234677665557888


Q ss_pred             EeeCC---CeEEEEeCCCC-ceEEeec--CCCCEEEEEECCCCcEEEEe--CCCeEEEEeCCC
Q 024372          163 SCTDS---GGVRLWDARSG-KIVQTLE--TKSPVTSAEVSRDGRYITTA--DGSSVKFWDANH  217 (268)
Q Consensus       163 ~~~~d---~~i~iwd~~~~-~~~~~~~--~~~~v~~~~~s~~g~~l~~~--~~~~v~~wd~~~  217 (268)
                      +|.+.   +.|++||++.. ..+++++  ....+.--.+.||-++++-+  .+..+.++.+..
T Consensus       232 TGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d  294 (1012)
T KOG1445|consen  232 TGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQD  294 (1012)
T ss_pred             cccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEecC
Confidence            87654   47999999874 4555554  44456666789998876544  345666666543

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.70  E-value=2.8e-15  Score=122.65  Aligned_cols=252  Identities=18%  Similarity=0.261  Sum_probs=166.7

Q ss_pred             eeeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCC--------C-----C---CeEEEeeCccCcEEEEE
Q 024372            5 KVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGE--------T-----G---DWIGTFEGHKGAVWSCC   68 (268)
Q Consensus         5 ~~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~--------~-----~---~~~~~~~~h~~~V~~~~   68 (268)
                      +++-.-.|..|...|+++.|+|   +|..||+|+.++++.+|-..        +     .   .....+++|...|+.++
T Consensus        54 ~V~y~s~Ls~H~~aVN~vRf~p---~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~  130 (434)
T KOG1009|consen   54 KVEYLSSLSRHTRAVNVVRFSP---DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLA  130 (434)
T ss_pred             eEEEeecccCCcceeEEEEEcC---CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhh
Confidence            4445555678999999999995   89999999999999999655        2     1   12456789999999999


Q ss_pred             ecCCCcEEEEeeCCCcEEEEeCCCCCeeeee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeE-------
Q 024372           69 LDANALFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE-------  140 (268)
Q Consensus        69 ~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~-------  140 (268)
                      |+|++.++++++.|.++++||+..++....+ .|...+..++|.|-.+.+++-+.|+..+.+++.........       
T Consensus       131 Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~  210 (434)
T KOG1009|consen  131 WSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPA  210 (434)
T ss_pred             ccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeee
Confidence            9999999999999999999999999987766 48899999999999999999998987777665432111000       


Q ss_pred             -ec-CCcccE-------------EEEEEeCCCCcEEEEeeC---------CCeEEEEeCCC-CceEEeecC-CCCEEEEE
Q 024372          141 -VG-NSSGSI-------------RTVAWLHSDQTILSSCTD---------SGGVRLWDARS-GKIVQTLET-KSPVTSAE  194 (268)
Q Consensus       141 -~~-~~~~~v-------------~~~~~~~~~~~~~~~~~~---------d~~i~iwd~~~-~~~~~~~~~-~~~v~~~~  194 (268)
                       .. +..+.+             ..++|.|++.. +++...         .++..+++-.. .++...++. ..+...+.
T Consensus       211 ~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~l-lvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr  289 (434)
T KOG1009|consen  211 KAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSL-LVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVR  289 (434)
T ss_pred             cccCCCCcceeeeeecCchhhhhhhcccCCCCcE-EEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEE
Confidence             00 001111             23456666543 333210         11222332110 111111211 11222222


Q ss_pred             EC------------------CCCcEEEEeCCCeEEEEeCCCceeeeEE-eC-CCCceeeEEcCCCCCEEEeccCCCeEEE
Q 024372          195 VS------------------RDGRYITTADGSSVKFWDANHFGLVKGY-NM-PCNTESASLEPKLGNIFIAGGEDMWVHV  254 (268)
Q Consensus       195 ~s------------------~~g~~l~~~~~~~v~~wd~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~gs~d~~i~~  254 (268)
                      ++                  |.+..++.+....|.+||.+.-.++... ++ ......++|++ +|..++..|.||.+.+
T Consensus       290 ~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~-dg~~l~vSS~DGyCS~  368 (434)
T KOG1009|consen  290 FSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSD-DGSVLLVSSTDGFCSL  368 (434)
T ss_pred             eeeeEEEeccccccccccccccceEEEEeecceEEEeccccccceEEEeeeeeeeecceeecC-CCcEEEEeccCCceEE
Confidence            22                  3444455667789999999875544322 11 23456778887 6999999999999888


Q ss_pred             EECCCCc
Q 024372          255 FDFHTGE  261 (268)
Q Consensus       255 wd~~~g~  261 (268)
                      --++..|
T Consensus       369 vtfe~~e  375 (434)
T KOG1009|consen  369 VTFEPWE  375 (434)
T ss_pred             EEEcchh
Confidence            7765433

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.69  E-value=5.9e-15  Score=133.28  Aligned_cols=244  Identities=14%  Similarity=0.157  Sum_probs=165.5

Q ss_pred             CCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC-----CCeEEEee---Cc----cCcEEEEEecCCCcEEEEeeCCC
Q 024372           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-----GDWIGTFE---GH----KGAVWSCCLDANALFSASGSADF   83 (268)
Q Consensus        16 ~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~-----~~~~~~~~---~h----~~~V~~~~~~~~~~~l~s~s~D~   83 (268)
                      ...|+.+.+-+. .|-.+|++|+.||.||||+...     .|++.-+.   ++    .+.-.-+.|-....+|+++|.-.
T Consensus      1109 ~t~Vs~l~liNe-~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r 1187 (1387)
T KOG1517|consen 1109 DTRVSDLELINE-QDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVR 1187 (1387)
T ss_pred             CCccceeeeecc-cchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCee
Confidence            346888888653 3667999999999999996543     34544332   22    11113346777666777777788


Q ss_pred             cEEEEeCCCCCeeeeecc--CCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCC--CCeEecCCccc--EEEEEEeCC
Q 024372           84 TAKLWDALTGDEKHSFEH--KHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDA--PPREVGNSSGS--IRTVAWLHS  156 (268)
Q Consensus        84 ~v~iw~~~~~~~~~~~~~--~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~--~~~~~~~~~~~--v~~~~~~~~  156 (268)
                      .|||||.....+...+..  ...++++.-+. .|+++++|..||.+++||.+....  .......|+..  |..+.+.+.
T Consensus      1188 ~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~ 1267 (1387)
T KOG1517|consen 1188 SIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQ 1267 (1387)
T ss_pred             EEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecC
Confidence            999999988887777653  34566665443 578999999999999999875433  33344455555  888888775


Q ss_pred             CCcEEEEeeCCCeEEEEeCCCCceEEe--ec----CCCCEEEEEECCCCcEEEEeCCCeEEEEeCCCc--eeeeEEe---
Q 024372          157 DQTILSSCTDSGGVRLWDARSGKIVQT--LE----TKSPVTSAEVSRDGRYITTADGSSVKFWDANHF--GLVKGYN---  225 (268)
Q Consensus       157 ~~~~~~~~~~d~~i~iwd~~~~~~~~~--~~----~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~--~~~~~~~---  225 (268)
                      +---+++++.+|.|++||+|.......  ..    ..+...++.++++...+++|+.+.|+||++...  ..++.+.   
T Consensus      1268 G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l~~~k~n~~F~ 1347 (1387)
T KOG1517|consen 1268 GLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQLNIIKYNPGFM 1347 (1387)
T ss_pred             CCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCcceEEEEecChhhhcccccCcccc
Confidence            544455666779999999998422211  11    123488999999999999988799999998532  1222111   


Q ss_pred             CC-C-CceeeEEcCCCCCEEEeccCCCeEEEEECCCCc
Q 024372          226 MP-C-NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGE  261 (268)
Q Consensus       226 ~~-~-~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~  261 (268)
                      .+ . ...+..|+| -.-++++|+.|..|.+|....++
T Consensus      1348 ~q~~gs~scL~FHP-~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1348 GQRIGSVSCLAFHP-HRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             cCcCCCcceeeecc-hhHhhhhccCCceEEEeecCCcC
Confidence            11 1 123455555 46678888999999999865543

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.69  E-value=9.5e-15  Score=116.40  Aligned_cols=232  Identities=15%  Similarity=0.172  Sum_probs=168.4

Q ss_pred             eeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCC---CeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEE
Q 024372           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG---DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLW   88 (268)
Q Consensus        12 ~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~---~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw   88 (268)
                      ++--.++|++-+|++   |+..+|.+-+...+.||....+   +..++++.|...|..+.|.|.+..|++|+.|...++|
T Consensus         6 ~~~~~~pitchAwn~---drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw   82 (361)
T KOG1523|consen    6 FHRLLEPITCHAWNS---DRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVW   82 (361)
T ss_pred             eeeccCceeeeeecC---CCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccc
Confidence            334467999999984   9999999999999999876654   4678999999999999999999999999999999999


Q ss_pred             eCC-CCC---eeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCC---CCeEecCCcccEEEEEEeCCCCcEE
Q 024372           89 DAL-TGD---EKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDA---PPREVGNSSGSIRTVAWLHSDQTIL  161 (268)
Q Consensus        89 ~~~-~~~---~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~  161 (268)
                      ... .+.   ....+.+....++|.|+|.++.+++|+..+.|-+|=.+.+.-   .......+...|.+++|.|++ .++
T Consensus        83 ~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn-VLl  161 (361)
T KOG1523|consen   83 TQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN-VLL  161 (361)
T ss_pred             ccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc-cee
Confidence            883 333   223346788899999999999999999999999987654321   111223456678999998865 466


Q ss_pred             EEeeCCCeEEEEeCC-----C-------------CceEEee-cCCCCEEEEEECCCCcEEE-EeCCCeEEEEeCCCce-e
Q 024372          162 SSCTDSGGVRLWDAR-----S-------------GKIVQTL-ETKSPVTSAEVSRDGRYIT-TADGSSVKFWDANHFG-L  220 (268)
Q Consensus       162 ~~~~~d~~i~iwd~~-----~-------------~~~~~~~-~~~~~v~~~~~s~~g~~l~-~~~~~~v~~wd~~~~~-~  220 (268)
                      ++|+-|+..|++..-     .             |+.+.++ ...+.+..+.|+|+|..|+ .+.|..+.+-|...-. .
T Consensus       162 aaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~  241 (361)
T KOG1523|consen  162 AAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSER  241 (361)
T ss_pred             cccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchh
Confidence            777778999998542     1             1122223 2234589999999998886 5788899988875432 3


Q ss_pred             eeEEeCCC-CceeeEEcCCCCCEEEeccCC
Q 024372          221 VKGYNMPC-NTESASLEPKLGNIFIAGGED  249 (268)
Q Consensus       221 ~~~~~~~~-~~~~~~~~~~~~~~~~~gs~d  249 (268)
                      +....... +..++.+.  ....+++++.|
T Consensus       242 v~~~~~~~lP~ls~~~i--se~~vv~ag~~  269 (361)
T KOG1523|consen  242 VQSVATAQLPLLSVSWI--SENSVVAAGYD  269 (361)
T ss_pred             ccchhhccCCceeeEee--cCCceeecCCC
Confidence            33333322 23333333  24556677766

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=2.6e-14  Score=126.88  Aligned_cols=241  Identities=16%  Similarity=0.182  Sum_probs=175.4

Q ss_pred             ecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC--C--CeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEe
Q 024372           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET--G--DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (268)
Q Consensus        14 ~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~--~--~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~   89 (268)
                      .|+..+++.+++|   .+.++|+|-.||.|.+|.-..  +  .....|.-|.+.|.+++|+++|.+|+|||+.+.+-+|.
T Consensus       203 ~Htf~~t~~~~sp---n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq  279 (792)
T KOG1963|consen  203 HHTFNITCVALSP---NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQ  279 (792)
T ss_pred             hhcccceeEEecc---ccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEe
Confidence            5888889999986   789999999999999995332  2  23456788999999999999999999999999999999


Q ss_pred             CCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCC--eE--------ecCCcccEEEEEEeCCCCc
Q 024372           90 ALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP--RE--------VGNSSGSIRTVAWLHSDQT  159 (268)
Q Consensus        90 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~--~~--------~~~~~~~v~~~~~~~~~~~  159 (268)
                      +.+++...-..-..+|..+.++||+...+....|+.|.+-...+-..+.  +.        ....++-.+.++..|.-. 
T Consensus       280 ~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~-  358 (792)
T KOG1963|consen  280 LETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN-  358 (792)
T ss_pred             ecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCC-
Confidence            9999854444577899999999999999999999999988653211111  11        111234456667777333 


Q ss_pred             EEEEeeCCCeEEEEeCCCCceEEeecC------------CCCEEEEEECCCCcEEEEeC---------CC--eEEEEeC-
Q 024372          160 ILSSCTDSGGVRLWDARSGKIVQTLET------------KSPVTSAEVSRDGRYITTAD---------GS--SVKFWDA-  215 (268)
Q Consensus       160 ~~~~~~~d~~i~iwd~~~~~~~~~~~~------------~~~v~~~~~s~~g~~l~~~~---------~~--~v~~wd~-  215 (268)
                      .++-++..+.|.+||+-+-+.+..+..            +..+..++.+..|.++++.+         |+  .+++|-. 
T Consensus       359 ~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n  438 (792)
T KOG1963|consen  359 SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYN  438 (792)
T ss_pred             ceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEc
Confidence            344455669999999988776655431            12456777788899988753         22  4789965 


Q ss_pred             ---CCceeeeEEeCCCC--ceeeEEcCCCCC-EEEeccCCCeEEEEECC
Q 024372          216 ---NHFGLVKGYNMPCN--TESASLEPKLGN-IFIAGGEDMWVHVFDFH  258 (268)
Q Consensus       216 ---~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~gs~d~~i~~wd~~  258 (268)
                         +++.+......|.+  ....++.++..+ +++++|.|+.+++|-+.
T Consensus       439 ~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~  487 (792)
T KOG1963|consen  439 PNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFT  487 (792)
T ss_pred             CCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEe
Confidence               34444455555544  234444444444 99999999999999873

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.68  E-value=5.1e-16  Score=133.51  Aligned_cols=198  Identities=19%  Similarity=0.191  Sum_probs=144.9

Q ss_pred             CCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC-------eEEEeeCccCcEEEEEecCCC-cEEEEeeCCCcEEEE
Q 024372           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD-------WIGTFEGHKGAVWSCCLDANA-LFSASGSADFTAKLW   88 (268)
Q Consensus        17 ~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~-------~~~~~~~h~~~V~~~~~~~~~-~~l~s~s~D~~v~iw   88 (268)
                      .-|.++.|+|.  |-+.||.|+.|+.|++|.+..+.       .-..+.+|..+|+++.|+|-- ..|++++.|.+|++|
T Consensus       628 t~vtDl~WdPF--D~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lW  705 (1012)
T KOG1445|consen  628 TLVTDLHWDPF--DDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELW  705 (1012)
T ss_pred             ceeeecccCCC--ChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeee
Confidence            46889999996  55789999999999999877642       346678899999999999854 678999999999999


Q ss_pred             eCCCCCeeeee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcc-cEEEEEEeCCCCcEEEEeeC
Q 024372           89 DALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSG-SIRTVAWLHSDQTILSSCTD  166 (268)
Q Consensus        89 ~~~~~~~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~  166 (268)
                      |+.++.....+ .|.+.|..++|+|+|+.+++.+.|+++++|..++.+...++-....+ .---|.|..++..++.+|.+
T Consensus       706 Dl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfd  785 (1012)
T KOG1445|consen  706 DLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFD  785 (1012)
T ss_pred             ehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEeccc
Confidence            99988876665 59999999999999999999999999999998876655544332222 11235677777777777654


Q ss_pred             C---CeEEEEeCCCCc--eEEeec--CCCCEEEEEECCCCcE-EEEe-CCCeEEEEeCC
Q 024372          167 S---GGVRLWDARSGK--IVQTLE--TKSPVTSAEVSRDGRY-ITTA-DGSSVKFWDAN  216 (268)
Q Consensus       167 d---~~i~iwd~~~~~--~~~~~~--~~~~v~~~~~s~~g~~-l~~~-~~~~v~~wd~~  216 (268)
                      .   +.|.+||.++-.  .+.+..  ......--.+.+|... +.++ .|..|.+|.+-
T Consensus       786 k~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~  844 (1012)
T KOG1445|consen  786 KSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVI  844 (1012)
T ss_pred             ccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEec
Confidence            2   468888877533  333322  1111222233456544 3455 57889988874

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.67  E-value=1.3e-14  Score=132.77  Aligned_cols=220  Identities=16%  Similarity=0.250  Sum_probs=156.8

Q ss_pred             eeCCCCCeEEEeeCccCcEEEEEecCCC-cEEEEeeCCCcEEEEeCCCCC-------eeeeec-cCCeEEEEEECCCCCE
Q 024372           46 RNGETGDWIGTFEGHKGAVWSCCLDANA-LFSASGSADFTAKLWDALTGD-------EKHSFE-HKHIVRACAFSEDTHL  116 (268)
Q Consensus        46 w~~~~~~~~~~~~~h~~~V~~~~~~~~~-~~l~s~s~D~~v~iw~~~~~~-------~~~~~~-~~~~v~~v~~~~~~~~  116 (268)
                      |+. .|.++..+..|+..|..++.++.. .+++|||.||+||+|+...-.       ...++. -...+.++.+.+.+..
T Consensus      1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred             CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence            544 478899999999999888887555 999999999999999985322       233343 4567888888899999


Q ss_pred             EEEeeCCCeEEEEECCCCCCC---CeEe---c-CCcc-cEEEEEEeCCCCc-EEEEeeCCCeEEEEeCCCCceEEeec--
Q 024372          117 LLTGGFEKILRIFDLNRPDAP---PREV---G-NSSG-SIRTVAWLHSDQT-ILSSCTDSGGVRLWDARSGKIVQTLE--  185 (268)
Q Consensus       117 l~s~~~d~~i~~~d~~~~~~~---~~~~---~-~~~~-~v~~~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~~~--  185 (268)
                      +|.++.||.|++..++.....   ....   . ...+ .+.+.++....+. +++.++.-+.|..||+++.....+++  
T Consensus      1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred             EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence            999999999999988652111   1110   0 1122 3444455443333 77777888899999999987766554  


Q ss_pred             -CCCCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeCCCC--ceeeEEc--CCCCCEEEecc--CCCeEEEEEC
Q 024372          186 -TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCN--TESASLE--PKLGNIFIAGG--EDMWVHVFDF  257 (268)
Q Consensus       186 -~~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~gs--~d~~i~~wd~  257 (268)
                       .++-|.+++++|.+..++.| +.|.+-+||+|-..++..+.++..  +.....+  ++.....++++  ....|.+|++
T Consensus      1193 ~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~ 1272 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNM 1272 (1431)
T ss_pred             ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeec
Confidence             35779999999999998776 468899999998888888776543  3333333  33236666544  4678999999


Q ss_pred             CCCcEEeec
Q 024372          258 HTGEQIAIT  266 (268)
Q Consensus       258 ~~g~~~~~~  266 (268)
                      .+|....++
T Consensus      1273 ~~g~~~~vl 1281 (1431)
T KOG1240|consen 1273 ETGLRQTVL 1281 (1431)
T ss_pred             ccCcceEEE
Confidence            988665543

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=2.2e-13  Score=119.59  Aligned_cols=218  Identities=13%  Similarity=0.068  Sum_probs=144.9

Q ss_pred             CCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeC---CCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEE
Q 024372           41 SSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSA---DFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLL  117 (268)
Q Consensus        41 ~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~---D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l  117 (268)
                      ..|.++|.. |.....+..|...+...+|+||++.|+..+.   +..|++||+.++.......++..+....|+|||+.+
T Consensus       182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~l  260 (435)
T PRK05137        182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKV  260 (435)
T ss_pred             eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEE
Confidence            356677764 4455567778889999999999998887653   468999999888765444455667788999999876


Q ss_pred             E-EeeCCCe--EEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCC--eEEEEeCCCCceEEeecCCCCEEE
Q 024372          118 L-TGGFEKI--LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG--GVRLWDARSGKIVQTLETKSPVTS  192 (268)
Q Consensus       118 ~-s~~~d~~--i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~v~~  192 (268)
                      + +.+.++.  |.+||+.++.  ...+..+.+......|+|++..++.++..++  .|.++|+..++.............
T Consensus       261 a~~~~~~g~~~Iy~~d~~~~~--~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~  338 (435)
T PRK05137        261 VMSLSQGGNTDIYTMDLRSGT--TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYST  338 (435)
T ss_pred             EEEEecCCCceEEEEECCCCc--eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccC
Confidence            5 5555554  6666876543  2334444445567899999887766554333  688889887765444333444667


Q ss_pred             EEECCCCcEEEEe-C-C--CeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccC-C-----CeEEEEECCCCcE
Q 024372          193 AEVSRDGRYITTA-D-G--SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE-D-----MWVHVFDFHTGEQ  262 (268)
Q Consensus       193 ~~~s~~g~~l~~~-~-~--~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~-d-----~~i~~wd~~~g~~  262 (268)
                      ..|+|+|+.++.. . .  ..|.+||+.... .+.+..........++| +|++++..+. .     ..++++|+..++.
T Consensus       339 ~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~~~~~~~p~~sp-DG~~i~~~~~~~~~~~~~~L~~~dl~g~~~  416 (435)
T PRK05137        339 PVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTSGFLVEGPTWAP-NGRVIMFFRQTPGSGGAPKLYTVDLTGRNE  416 (435)
T ss_pred             eEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccCCCCCCCCeECC-CCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence            8899999988643 2 2  368888975432 23333222345567777 5877765433 2     3688889865554


Q ss_pred             E
Q 024372          263 I  263 (268)
Q Consensus       263 ~  263 (268)
                      .
T Consensus       417 ~  417 (435)
T PRK05137        417 R  417 (435)
T ss_pred             E
Confidence            3

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.67  E-value=4.2e-14  Score=129.57  Aligned_cols=245  Identities=16%  Similarity=0.106  Sum_probs=164.4

Q ss_pred             eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCC-------CeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcE
Q 024372           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG-------DWIGTFEGHKGAVWSCCLDANALFSASGSADFTA   85 (268)
Q Consensus        13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~-------~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v   85 (268)
                      +.|+..|..++-++  +++.+++|||.||+|++|+..+-       +...++.--...+.++.+.+.+..+|.++.||.|
T Consensus      1045 ~Ehs~~v~k~a~s~--~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v 1122 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSS--EHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSV 1122 (1431)
T ss_pred             hhccccccceeecC--CCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeE
Confidence            57888888888775  67789999999999999987652       1223333345688889999999999999999999


Q ss_pred             EEEeCCCCCeee-e------ec-c--CCeEEEEEECC-CCC-EEEEeeCCCeEEEEECCCCCCCCe-EecCCcccEEEEE
Q 024372           86 KLWDALTGDEKH-S------FE-H--KHIVRACAFSE-DTH-LLLTGGFEKILRIFDLNRPDAPPR-EVGNSSGSIRTVA  152 (268)
Q Consensus        86 ~iw~~~~~~~~~-~------~~-~--~~~v~~v~~~~-~~~-~l~s~~~d~~i~~~d~~~~~~~~~-~~~~~~~~v~~~~  152 (268)
                      ++.++...+... .      .. +  +..|...+|.. ... .++.+..-+-|..||++....... ......|.|++++
T Consensus      1123 ~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~ 1202 (1431)
T KOG1240|consen 1123 RVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIV 1202 (1431)
T ss_pred             EEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEE
Confidence            999986632211 1      11 1  12344445544 223 677777788899999875432222 1223357899999


Q ss_pred             EeCCCCcEEEEeeCCCeEEEEeCCCCceEEeec--CCCCEEEEEECCCCc---EEE-Ee--CCCeEEEEeCCCceeeeEE
Q 024372          153 WLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE--TKSPVTSAEVSRDGR---YIT-TA--DGSSVKFWDANHFGLVKGY  224 (268)
Q Consensus       153 ~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~s~~g~---~l~-~~--~~~~v~~wd~~~~~~~~~~  224 (268)
                      ..|.+.+++++ +..|.+-+||+|=+..+...+  .+.++..+..+|-..   ..+ ++  ..+.|.+|++.++.+-..+
T Consensus      1203 idp~~~WlviG-ts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl 1281 (1431)
T KOG1240|consen 1203 IDPWCNWLVIG-TSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVL 1281 (1431)
T ss_pred             ecCCceEEEEe-cCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEE
Confidence            98887766654 555999999999777776554  456777777776433   333 33  3578999999887554444


Q ss_pred             eCC-----------CC------ce--eeEEcCCCCCEEEeccCCCeEEEEECCCC
Q 024372          225 NMP-----------CN------TE--SASLEPKLGNIFIAGGEDMWVHVFDFHTG  260 (268)
Q Consensus       225 ~~~-----------~~------~~--~~~~~~~~~~~~~~gs~d~~i~~wd~~~g  260 (268)
                      -..           .+      ..  ..+.....+..+.+|+.|+.|+.||...-
T Consensus      1282 ~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1282 WASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred             EcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence            222           11      00  11112224668889999999999997543

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.66  E-value=1.9e-15  Score=126.30  Aligned_cols=251  Identities=17%  Similarity=0.176  Sum_probs=183.6

Q ss_pred             eeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEe-eCccCcEEEEEecCCC--cEEEEeeCCCcEEEE
Q 024372           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF-EGHKGAVWSCCLDANA--LFSASGSADFTAKLW   88 (268)
Q Consensus        12 ~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~-~~h~~~V~~~~~~~~~--~~l~s~s~D~~v~iw   88 (268)
                      |.+|.+.|+.+.|+.   .|..|++||.|..+.+||...++....| .||...|....|.|..  +-+++++.||.+++=
T Consensus       138 L~~H~GcVntV~FN~---~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s  214 (559)
T KOG1334|consen  138 LNKHKGCVNTVHFNQ---RGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS  214 (559)
T ss_pred             ccCCCCccceeeecc---cCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence            568999999999985   7899999999999999999998766555 5899999888888754  457999999999997


Q ss_pred             eCCC-CCe---eeeeccCCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCCC--eEecCCcc---cEEEEEEeCCCC
Q 024372           89 DALT-GDE---KHSFEHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPP--REVGNSSG---SIRTVAWLHSDQ  158 (268)
Q Consensus        89 ~~~~-~~~---~~~~~~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~--~~~~~~~~---~v~~~~~~~~~~  158 (268)
                      .+.. +.+   .+...|..+|..++..| ..+.|.+++.|+.++-+|++......  .....+..   ....++..|...
T Consensus       215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt  294 (559)
T KOG1334|consen  215 EILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT  294 (559)
T ss_pred             eeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc
Confidence            6543 322   34456889999999988 45788999999999999987643221  11112222   457788888888


Q ss_pred             cEEEEeeCCCeEEEEeCCCCce------EEeecC-------CCCEEEEEECCCC-cEEEEeCCCeEEEEeCCC--c----
Q 024372          159 TILSSCTDSGGVRLWDARSGKI------VQTLET-------KSPVTSAEVSRDG-RYITTADGSSVKFWDANH--F----  218 (268)
Q Consensus       159 ~~~~~~~~d~~i~iwd~~~~~~------~~~~~~-------~~~v~~~~~s~~g-~~l~~~~~~~v~~wd~~~--~----  218 (268)
                      +.+++++.|..+++||.|.-..      +.++..       ...|.++.++.++ .++++=.|..|.++....  +    
T Consensus       295 ~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~  374 (559)
T KOG1334|consen  295 NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPD  374 (559)
T ss_pred             cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCC
Confidence            8888888889999999975321      233321       2458999999766 455555778899995421  1    


Q ss_pred             ------eeeeE-EeCCCC---ceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEee
Q 024372          219 ------GLVKG-YNMPCN---TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       219 ------~~~~~-~~~~~~---~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~  265 (268)
                            ..++. |..+.+   +..+-|+.+-..++++||.=|-|.+|+=++++.|..
T Consensus       375 ~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~  431 (559)
T KOG1334|consen  375 PSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRF  431 (559)
T ss_pred             CCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHH
Confidence                  11222 444333   344566655678889999989999999888887654

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=1.6e-13  Score=120.02  Aligned_cols=218  Identities=17%  Similarity=0.121  Sum_probs=137.6

Q ss_pred             CeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCC---CcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEE
Q 024372           42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD---FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL  118 (268)
Q Consensus        42 ~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D---~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~  118 (268)
                      .+.++|. +|+....+..+...+.+.+|+||++.++..+.+   ..|++||+.++........+..+....|+||++.++
T Consensus       177 ~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la  255 (427)
T PRK02889        177 QLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLA  255 (427)
T ss_pred             EEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEE
Confidence            4555565 455555566677889999999999988876643   459999998887654433444566789999998776


Q ss_pred             -EeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEe--CCCCceEEeecCCCCEEEEEE
Q 024372          119 -TGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD--ARSGKIVQTLETKSPVTSAEV  195 (268)
Q Consensus       119 -s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd--~~~~~~~~~~~~~~~v~~~~~  195 (268)
                       +.+.++...+|.++........+..+.+......|+|++..++.++..++...||.  +.+++...............|
T Consensus       256 ~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~  335 (427)
T PRK02889        256 VALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRI  335 (427)
T ss_pred             EEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEE
Confidence             56777777777543222223344334444566789999888776655446666664  455544332222222346789


Q ss_pred             CCCCcEEEE-eCC---CeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCCC---eEEEEECCCCcEE
Q 024372          196 SRDGRYITT-ADG---SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDM---WVHVFDFHTGEQI  263 (268)
Q Consensus       196 s~~g~~l~~-~~~---~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~---~i~~wd~~~g~~~  263 (268)
                      +|||++++. +.+   ..|.+||+...+.. ............++| +|++++.++.++   .+++.++. |+..
T Consensus       336 SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~~~~~~~p~~sp-dg~~l~~~~~~~g~~~l~~~~~~-g~~~  407 (427)
T PRK02889        336 SPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALTDTTRDESPSFAP-NGRYILYATQQGGRSVLAAVSSD-GRIK  407 (427)
T ss_pred             CCCCCEEEEEEccCCcEEEEEEECCCCCeE-EccCCCCccCceECC-CCCEEEEEEecCCCEEEEEEECC-CCce
Confidence            999998864 322   26999999776433 222222334567777 588777665432   46676763 5433

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.65  E-value=3e-13  Score=109.81  Aligned_cols=231  Identities=16%  Similarity=0.148  Sum_probs=159.7

Q ss_pred             CCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEE--EecCCCcEEEEeeCC--CcEEEEeCCC
Q 024372           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSC--CLDANALFSASGSAD--FTAKLWDALT   92 (268)
Q Consensus        17 ~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~--~~~~~~~~l~s~s~D--~~v~iw~~~~   92 (268)
                      ..+....|+.   |...|..|+.||. +++..+..+.  .+..-.+.+.-|  -|+  ..++|-.+.+  ..+++.+...
T Consensus         6 ~ti~~~~~Nq---d~~~lsvGs~~Gy-k~~~~~~~~k--~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk   77 (391)
T KOG2110|consen    6 PTINFIGFNQ---DSTLLSVGSKDGY-KIFSCSPFEK--CFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKK   77 (391)
T ss_pred             cceeeeeecc---ceeEEEccCCCce-eEEecCchHH--hhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEccc
Confidence            3556666774   7778999999997 6666555432  122223333333  354  3444444444  4589999988


Q ss_pred             CCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecC--CcccEEEEEEeCCCCcEEE-EeeCCCe
Q 024372           93 GDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN--SSGSIRTVAWLHSDQTILS-SCTDSGG  169 (268)
Q Consensus        93 ~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~-~~~~d~~  169 (268)
                      ...+..+..+.+|.+|.++.+  .|+.+-. ..|.+||+.+.+........  +...+..++.++.+.++.. ++.+.|.
T Consensus        78 ~~~ICe~~fpt~IL~VrmNr~--RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~Gd  154 (391)
T KOG2110|consen   78 KTTICEIFFPTSILAVRMNRK--RLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGD  154 (391)
T ss_pred             CceEEEEecCCceEEEEEccc--eEEEEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCce
Confidence            888888888889999999865  4555444 45999999876654333222  2223444444443333322 2344589


Q ss_pred             EEEEeCCCCceEEeec-CCCCEEEEEECCCCcEEEEeC-CC-eEEEEeCCCceeeeEEeC---CCCceeeEEcCCCCCEE
Q 024372          170 VRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYITTAD-GS-SVKFWDANHFGLVKGYNM---PCNTESASLEPKLGNIF  243 (268)
Q Consensus       170 i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~-~~-~v~~wd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  243 (268)
                      |.|||+.+.+.+.++. |.+++.+++|+|+|.++++++ .| .||++.+..+..+..|..   +..+.+++|++ ++.+|
T Consensus       155 V~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~-ds~~L  233 (391)
T KOG2110|consen  155 VVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSP-DSQFL  233 (391)
T ss_pred             EEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECC-CCCeE
Confidence            9999999999888887 557799999999999999865 34 479999999888877754   34566788887 68899


Q ss_pred             EeccCCCeEEEEECCC
Q 024372          244 IAGGEDMWVHVFDFHT  259 (268)
Q Consensus       244 ~~gs~d~~i~~wd~~~  259 (268)
                      ++.|..++|++|.++.
T Consensus       234 ~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  234 AASSNTETVHIFKLEK  249 (391)
T ss_pred             EEecCCCeEEEEEecc
Confidence            9999999999998753

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.65  E-value=4.1e-14  Score=113.89  Aligned_cols=246  Identities=18%  Similarity=0.261  Sum_probs=170.1

Q ss_pred             ecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC---CC--eEEEeeCcc------------CcEEEEEecCCCc--
Q 024372           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET---GD--WIGTFEGHK------------GAVWSCCLDANAL--   74 (268)
Q Consensus        14 ~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~---~~--~~~~~~~h~------------~~V~~~~~~~~~~--   74 (268)
                      ...+.|.++.|.   .+|.+||+|..+|-+.++.-..   ++  ...++..|+            .+|..+.|-+++.  
T Consensus        23 teadiis~vef~---~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a   99 (433)
T KOG1354|consen   23 TEADIISAVEFD---HYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLA   99 (433)
T ss_pred             chhcceeeEEee---cccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCcc
Confidence            345678899998   4899999999999999884322   22  445566664            4577888876653  


Q ss_pred             EEEEeeCCCcEEEEeCCCCCe-----------------------------------eeee--ccCCeEEEEEECCCCCEE
Q 024372           75 FSASGSADFTAKLWDALTGDE-----------------------------------KHSF--EHKHIVRACAFSEDTHLL  117 (268)
Q Consensus        75 ~l~s~s~D~~v~iw~~~~~~~-----------------------------------~~~~--~~~~~v~~v~~~~~~~~l  117 (268)
                      .++....|++|++|.+.....                                   ++.+  .|.--|++++++.|...+
T Consensus       100 ~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~  179 (433)
T KOG1354|consen  100 EFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETF  179 (433)
T ss_pred             EEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceE
Confidence            455566899999999854221                                   1111  144568899999999998


Q ss_pred             EEeeCCCeEEEEECCCCCCCCeEe--cCC-----cccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCce----EEeec-
Q 024372          118 LTGGFEKILRIFDLNRPDAPPREV--GNS-----SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI----VQTLE-  185 (268)
Q Consensus       118 ~s~~~d~~i~~~d~~~~~~~~~~~--~~~-----~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~----~~~~~-  185 (268)
                      +++ .|-.|.+|+++-........  ..+     ...|++..|.|...++++.++..|+|||-|+|....    .+.++ 
T Consensus       180 lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEe  258 (433)
T KOG1354|consen  180 LSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEE  258 (433)
T ss_pred             eec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcc
Confidence            876 56789999986432221111  111     234677778888778887777789999999995321    11111 


Q ss_pred             ---C---------CCCEEEEEECCCCcEEEEeCCCeEEEEeC-CCceeeeEEeCCCCc----------------eeeEEc
Q 024372          186 ---T---------KSPVTSAEVSRDGRYITTADGSSVKFWDA-NHFGLVKGYNMPCNT----------------ESASLE  236 (268)
Q Consensus       186 ---~---------~~~v~~~~~s~~g~~l~~~~~~~v~~wd~-~~~~~~~~~~~~~~~----------------~~~~~~  236 (268)
                         .         -..+..+.|+++|+|+++=+=-+|++||+ ...+++.+++.+...                ..++++
T Consensus       259 pedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~s  338 (433)
T KOG1354|consen  259 PEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWS  338 (433)
T ss_pred             ccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEc
Confidence               0         13578899999999998766679999999 566788888765311                123444


Q ss_pred             CCCCCEEEeccCCCeEEEEECCCCcEEe
Q 024372          237 PKLGNIFIAGGEDMWVHVFDFHTGEQIA  264 (268)
Q Consensus       237 ~~~~~~~~~gs~d~~i~~wd~~~g~~~~  264 (268)
                      . ++..+.|||.....++|+...|....
T Consensus       339 g-~~~~v~TGsy~n~frvf~~~~gsk~d  365 (433)
T KOG1354|consen  339 G-NDSYVMTGSYNNVFRVFNLARGSKED  365 (433)
T ss_pred             C-CcceEecccccceEEEecCCCCccee
Confidence            4 57799999999999999977666543

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.64  E-value=9e-14  Score=113.49  Aligned_cols=246  Identities=16%  Similarity=0.173  Sum_probs=169.9

Q ss_pred             cCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEe------eCccCcEEEEEecCCCcEEEEeeCCCcEEEE
Q 024372           15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF------EGHKGAVWSCCLDANALFSASGSADFTAKLW   88 (268)
Q Consensus        15 h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~------~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw   88 (268)
                      -...|..+.|. ..+.+..|...+.|..+.+......++...+      ..-+++|..++..  ...|.+|-.+|.+.+|
T Consensus        54 ~~~ris~l~~~-~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~  130 (412)
T KOG3881|consen   54 ELDRISSLLFG-VDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVR  130 (412)
T ss_pred             hhhhhhhheee-cCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEE
Confidence            44567788886 3456677777778888888887777655443      3345666555443  3456788889999999


Q ss_pred             eCCCCCe----eeeeccCCeEEEEEECC-CCCEEEEeeCC--CeEEEEECCCCCCCCeEecCC--------cccEEEEEE
Q 024372           89 DALTGDE----KHSFEHKHIVRACAFSE-DTHLLLTGGFE--KILRIFDLNRPDAPPREVGNS--------SGSIRTVAW  153 (268)
Q Consensus        89 ~~~~~~~----~~~~~~~~~v~~v~~~~-~~~~l~s~~~d--~~i~~~d~~~~~~~~~~~~~~--------~~~v~~~~~  153 (268)
                      ....+..    ...+.....+..+.-++ +..++++|+..  +.+++||++......+...-.        .-+++.+.|
T Consensus       131 ~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~F  210 (412)
T KOG3881|consen  131 HDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRF  210 (412)
T ss_pred             eccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecccee
Confidence            9885542    22333334455555555 45677779988  889999997542111111101        124567788


Q ss_pred             eCCC-CcEEEEeeCCCeEEEEeCCCC-ceEEeec-CCCCEEEEEECCCCcEEEEeC-CCeEEEEeCCCceeeeE-EeCCC
Q 024372          154 LHSD-QTILSSCTDSGGVRLWDARSG-KIVQTLE-TKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKG-YNMPC  228 (268)
Q Consensus       154 ~~~~-~~~~~~~~~d~~i~iwd~~~~-~~~~~~~-~~~~v~~~~~s~~g~~l~~~~-~~~v~~wd~~~~~~~~~-~~~~~  228 (268)
                      .+.. ...+++++.-+++|+||++.+ +++..+. ...++.++...|.|+++.+++ -+.+..||++....+.. +..-.
T Consensus       211 l~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~t  290 (412)
T KOG3881|consen  211 LEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGIT  290 (412)
T ss_pred             cCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCcc
Confidence            7652 345778888899999999976 5677775 456799999999999998875 57899999998876543 44433


Q ss_pred             C-ceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEe
Q 024372          229 N-TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIA  264 (268)
Q Consensus       229 ~-~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~  264 (268)
                      + +.++..+| ...+++++|.|+.+|++|+++.+++.
T Consensus       291 Gsirsih~hp-~~~~las~GLDRyvRIhD~ktrkll~  326 (412)
T KOG3881|consen  291 GSIRSIHCHP-THPVLASCGLDRYVRIHDIKTRKLLH  326 (412)
T ss_pred             CCcceEEEcC-CCceEEeeccceeEEEeecccchhhh
Confidence            3 44555555 67899999999999999999866643

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.63  E-value=1.8e-15  Score=125.80  Aligned_cols=225  Identities=21%  Similarity=0.259  Sum_probs=173.6

Q ss_pred             eEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeec
Q 024372           21 DLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE  100 (268)
Q Consensus        21 ~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~  100 (268)
                      .+.|.   .+|.+|+.|+.-|.+-.+|..++++...+.- ...|+.+.|-.+.+++|. ..-..++|||- .+...+.+.
T Consensus       134 ~~~yt---rnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AV-AQK~y~yvYD~-~GtElHClk  207 (545)
T KOG1272|consen  134 HLDYT---RNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAV-AQKKYVYVYDN-NGTELHCLK  207 (545)
T ss_pred             eeeec---CCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHh-hhhceEEEecC-CCcEEeehh
Confidence            56775   5899999999999999999999999888763 457888888877777764 46678999985 455566666


Q ss_pred             cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCce
Q 024372          101 HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI  180 (268)
Q Consensus       101 ~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~  180 (268)
                      -...|..+.|-|..-+|++++..|.++.-|+..++.. ..+....+.+..+.-+|-+..+- .|...|+|.+|...+.++
T Consensus       208 ~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklV-a~~~t~~G~~~vm~qNP~NaVih-~GhsnGtVSlWSP~skeP  285 (545)
T KOG1272|consen  208 RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLV-ASIRTGAGRTDVMKQNPYNAVIH-LGHSNGTVSLWSPNSKEP  285 (545)
T ss_pred             hcCchhhhcccchhheeeecccCCceEEEeechhhhh-HHHHccCCccchhhcCCccceEE-EcCCCceEEecCCCCcch
Confidence            5667888999999999999999999999999877543 33334456677777777665444 445569999999998887


Q ss_pred             EE-eecCCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEE
Q 024372          181 VQ-TLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFD  256 (268)
Q Consensus       181 ~~-~~~~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd  256 (268)
                      +. .+.+.++|.++++.|+|+|+++ |-|+.|+|||++.+..+.++..+.....++++   .+.+++.|....|.+|.
T Consensus       286 LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~S---qkglLA~~~G~~v~iw~  360 (545)
T KOG1272|consen  286 LVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLS---QKGLLALSYGDHVQIWK  360 (545)
T ss_pred             HHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCccccccc---cccceeeecCCeeeeeh
Confidence            65 4567789999999999999886 56999999999998877777766555555554   33455566666699995

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.63  E-value=1.4e-14  Score=122.64  Aligned_cols=175  Identities=15%  Similarity=0.159  Sum_probs=131.0

Q ss_pred             eeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCC
Q 024372           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL   91 (268)
Q Consensus        12 ~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~   91 (268)
                      ...|.+.|.+-.|+|   ||.-|++++.||.|++|. ++|-+..++-....+|++++|.|++.-++-+..+ .+.+=.+.
T Consensus       100 v~AH~~A~~~gRW~~---dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~-h~~IKpL~  174 (737)
T KOG1524|consen  100 ISAHAAAISSGRWSP---DGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGG-HISIKPLA  174 (737)
T ss_pred             hhhhhhhhhhcccCC---CCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecCC-eEEEeecc
Confidence            357999999999985   999999999999999997 4565666666678899999999998766555443 34443443


Q ss_pred             CCCeeeee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeE
Q 024372           92 TGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (268)
Q Consensus        92 ~~~~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i  170 (268)
                      .+.....+ .|...|.++.|++...++++|+.|-..++||.- +.. ......|..+|++++|+|+  .+++.++. +++
T Consensus       175 ~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~-Lf~S~~~ey~ITSva~npd--~~~~v~S~-nt~  249 (737)
T KOG1524|consen  175 ANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GAN-LFTSAAEEYAITSVAFNPE--KDYLLWSY-NTA  249 (737)
T ss_pred             cccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-Ccc-cccCChhccceeeeeeccc--cceeeeee-eee
Confidence            33333333 488899999999999999999999999999964 222 2222346779999999997  45556665 777


Q ss_pred             EEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEeC
Q 024372          171 RLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTAD  206 (268)
Q Consensus       171 ~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  206 (268)
                      |+=..+          .+.+..++|||||..++++.
T Consensus       250 R~~~p~----------~GSifnlsWS~DGTQ~a~gt  275 (737)
T KOG1524|consen  250 RFSSPR----------VGSIFNLSWSADGTQATCGT  275 (737)
T ss_pred             eecCCC----------ccceEEEEEcCCCceeeccc
Confidence            732111          35588999999999998764

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=2e-13  Score=119.70  Aligned_cols=204  Identities=14%  Similarity=0.074  Sum_probs=135.1

Q ss_pred             eecEEeeecCCCeeeEEEecCCCCCcEEEEEeCC---CCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEE-EeeCC
Q 024372            7 AVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKD---SSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSA-SGSAD   82 (268)
Q Consensus         7 ~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d---~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~-s~s~D   82 (268)
                      ..+..+..|.+++.+.+|+|   ||+.|+..+.+   ..+.+|++.+++.. .+..+.+.....+|+|+++.++ +.+.+
T Consensus       194 ~~~~~lt~~~~~v~~p~wSp---Dg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~~l~~~~s~~  269 (433)
T PRK04922        194 YNPQTILRSAEPILSPAWSP---DGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDGRRLALTLSRD  269 (433)
T ss_pred             CCceEeecCCCccccccCCC---CCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCCCEEEEEEeCC
Confidence            34555667778888899985   99999988744   35888999888754 3334445556789999998764 55555


Q ss_pred             C--cEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeC-CCe--EEEEECCCCCCCCeEecCCcccEEEEEEeCCC
Q 024372           83 F--TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGF-EKI--LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSD  157 (268)
Q Consensus        83 ~--~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~-d~~--i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~  157 (268)
                      +  .|++||+.++.......+.......+|+||++.++.++. ++.  |.++|+..+.  .+.+..........+|+|++
T Consensus       270 g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~--~~~lt~~g~~~~~~~~SpDG  347 (433)
T PRK04922        270 GNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS--AERLTFQGNYNARASVSPDG  347 (433)
T ss_pred             CCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC--eEEeecCCCCccCEEECCCC
Confidence            5  599999988776544444444567889999998877653 444  5555665433  22222222334467899988


Q ss_pred             CcEEEEeeCCC--eEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEE-eC---CCeEEEEeCCC
Q 024372          158 QTILSSCTDSG--GVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-AD---GSSVKFWDANH  217 (268)
Q Consensus       158 ~~~~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~---~~~v~~wd~~~  217 (268)
                      ..++.+..+++  .|.+||+.+++.. .+..........|+|||++++. +.   ...+.++|+..
T Consensus       348 ~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g  412 (433)
T PRK04922        348 KKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG  412 (433)
T ss_pred             CEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence            87766544433  6999999888755 3332223456789999998754 32   23577788754

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=4.2e-13  Score=117.77  Aligned_cols=204  Identities=15%  Similarity=0.091  Sum_probs=139.7

Q ss_pred             ecEEeeecCCCeeeEEEecCCCCCcEEEEEeC---CCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEE-EeeCCC
Q 024372            8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASK---DSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSA-SGSADF   83 (268)
Q Consensus         8 ~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~---d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~-s~s~D~   83 (268)
                      .+..+..|.+++...+|+|   ||+.|+..+.   +..+.+||+.+++.. .+..+.+.+...+|+||++.++ +.+.++
T Consensus       193 ~~~~lt~~~~~v~~p~wSp---DG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g  268 (435)
T PRK05137        193 NVRYLTDGSSLVLTPRFSP---NRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGG  268 (435)
T ss_pred             CcEEEecCCCCeEeeEECC---CCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCC
Confidence            4455667888999999985   9999988764   457889999888753 4556677788889999998764 566666


Q ss_pred             c--EEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeC-C--CeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCC
Q 024372           84 T--AKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGF-E--KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ  158 (268)
Q Consensus        84 ~--v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~-d--~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~  158 (268)
                      .  |++||+.++.......+........|+||++.++..+. +  ..|.++|+..+.  .+.+....+.+....|+|++.
T Consensus       269 ~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~--~~~lt~~~~~~~~~~~SpdG~  346 (435)
T PRK05137        269 NTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN--PRRISFGGGRYSTPVWSPRGD  346 (435)
T ss_pred             CceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC--eEEeecCCCcccCeEECCCCC
Confidence            5  77778887776554445555667899999998887663 3  357777876433  233323344566678999988


Q ss_pred             cEEEEeeCC--CeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEE-eC-C-----CeEEEEeCCCc
Q 024372          159 TILSSCTDS--GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-AD-G-----SSVKFWDANHF  218 (268)
Q Consensus       159 ~~~~~~~~d--~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~-~-----~~v~~wd~~~~  218 (268)
                      .++.+..+.  ..|.+||+..+.. ..+.....+....|+|||++++. +. .     ..+.+.|+...
T Consensus       347 ~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~  414 (435)
T PRK05137        347 LIAFTKQGGGQFSIGVMKPDGSGE-RILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR  414 (435)
T ss_pred             EEEEEEcCCCceEEEEEECCCCce-EeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence            776654333  3688899865543 33433334667899999998754 32 1     25677777543

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.62  E-value=3.1e-12  Score=109.20  Aligned_cols=252  Identities=16%  Similarity=0.141  Sum_probs=157.5

Q ss_pred             EEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEee-CCCcEEEE
Q 024372           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS-ADFTAKLW   88 (268)
Q Consensus        10 ~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s-~D~~v~iw   88 (268)
                      ..+.....+-..+.|+   |||+++..+++|+.+.++|+.+++.+++++.-.+ -..+++++||++++.+. .++.+.++
T Consensus        30 ~~i~~~~~~h~~~~~s---~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-~~~i~~s~DG~~~~v~n~~~~~v~v~  105 (369)
T PF02239_consen   30 ARIPTGGAPHAGLKFS---PDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN-PRGIAVSPDGKYVYVANYEPGTVSVI  105 (369)
T ss_dssp             EEEE-STTEEEEEE-T---T-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-EEEEEE--TTTEEEEEEEETTEEEEE
T ss_pred             EEEcCCCCceeEEEec---CCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC-cceEEEcCCCCEEEEEecCCCceeEe
Confidence            3343333333346676   5999999999999999999999999999975443 56799999999887655 78999999


Q ss_pred             eCCCCCeeeeeccC--------CeEEEEEECCCCCEEEEeeCC-CeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCc
Q 024372           89 DALTGDEKHSFEHK--------HIVRACAFSEDTHLLLTGGFE-KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQT  159 (268)
Q Consensus        89 ~~~~~~~~~~~~~~--------~~v~~v~~~~~~~~l~s~~~d-~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  159 (268)
                      |.++.+.+..++..        ..+..+..+|....++..-.| +.|-+.|......................|.|++.+
T Consensus       106 D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry  185 (369)
T PF02239_consen  106 DAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRY  185 (369)
T ss_dssp             ETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSE
T ss_pred             ccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccce
Confidence            99999988877522        245667678877755555544 777777866543222222122233456778888888


Q ss_pred             EEEEeeCCCeEEEEeCCCCceEEeecCC----------------------------------------------------
Q 024372          160 ILSSCTDSGGVRLWDARSGKIVQTLETK----------------------------------------------------  187 (268)
Q Consensus       160 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~----------------------------------------------------  187 (268)
                      ++++...++.|-++|+++++.+..+...                                                    
T Consensus       186 ~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I  265 (369)
T PF02239_consen  186 FLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTI  265 (369)
T ss_dssp             EEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEE
T ss_pred             eeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEE
Confidence            7777777788999998877655432110                                                    


Q ss_pred             ---CCEEEEEECCCCcEEEEe----C-CCeEEEEeCCCceeeeEEeCCCC--ceeeEEcCCCCCEEEecc--CCCeEEEE
Q 024372          188 ---SPVTSAEVSRDGRYITTA----D-GSSVKFWDANHFGLVKGYNMPCN--TESASLEPKLGNIFIAGG--EDMWVHVF  255 (268)
Q Consensus       188 ---~~v~~~~~s~~g~~l~~~----~-~~~v~~wd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~gs--~d~~i~~w  255 (268)
                         +...-+..+|+++++...    . .+.|.++|.++.+.++++.....  ..-..+.+ +|+.+..+.  .++.|.+|
T Consensus       266 ~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~-dG~~v~vS~~~~~~~i~v~  344 (369)
T PF02239_consen  266 PTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNP-DGKEVWVSVWDGNGAIVVY  344 (369)
T ss_dssp             E-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-T-TSSEEEEEEE--TTEEEEE
T ss_pred             ECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECC-CCCEEEEEEecCCCEEEEE
Confidence               011344558999887654    2 37899999999877776653323  44455666 577655443  34479999


Q ss_pred             ECCCCcEEeec
Q 024372          256 DFHTGEQIAIT  266 (268)
Q Consensus       256 d~~~g~~~~~~  266 (268)
                      |.+|.+++++.
T Consensus       345 D~~Tl~~~~~i  355 (369)
T PF02239_consen  345 DAKTLKEKKRI  355 (369)
T ss_dssp             ETTTTEEEEEE
T ss_pred             ECCCcEEEEEE
Confidence            99999998764

...

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=3.7e-13  Score=118.02  Aligned_cols=216  Identities=17%  Similarity=0.113  Sum_probs=141.5

Q ss_pred             CCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeC---CCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEE
Q 024372           41 SSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSA---DFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLL  117 (268)
Q Consensus        41 ~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~---D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l  117 (268)
                      .+|.+||.. +.....+..|...+...+|+||++.++..+.   +..|++||+.++................|+|+++.+
T Consensus       184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l  262 (433)
T PRK04922        184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRL  262 (433)
T ss_pred             EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEE
Confidence            357788875 4444556667788999999999999887763   346999999887764443344445578899999876


Q ss_pred             E-EeeCCC--eEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCe--EEEEeCCCCceEEeecCCCCEEE
Q 024372          118 L-TGGFEK--ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG--VRLWDARSGKIVQTLETKSPVTS  192 (268)
Q Consensus       118 ~-s~~~d~--~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~--i~iwd~~~~~~~~~~~~~~~v~~  192 (268)
                      + +.+.++  .|.+||+.++.  ......+.+.....+|+|++..++.++..++.  |.++|+.+++.............
T Consensus       263 ~~~~s~~g~~~Iy~~d~~~g~--~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~  340 (433)
T PRK04922        263 ALTLSRDGNPEIYVMDLGSRQ--LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNAR  340 (433)
T ss_pred             EEEEeCCCCceEEEEECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccC
Confidence            5 445444  58889987653  23333333344567899988877666544444  77778877765433222223446


Q ss_pred             EEECCCCcEEEEe--CC--CeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccC---CCeEEEEECCCCc
Q 024372          193 AEVSRDGRYITTA--DG--SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE---DMWVHVFDFHTGE  261 (268)
Q Consensus       193 ~~~s~~g~~l~~~--~~--~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~---d~~i~~wd~~~g~  261 (268)
                      ..|+|+|++++..  ++  ..|.+||+...... .+..........+++ +|++++..+.   ...|++++...+.
T Consensus       341 ~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~sp-dG~~i~~~s~~~g~~~L~~~~~~g~~  414 (433)
T PRK04922        341 ASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAP-NGSMVLYATREGGRGVLAAVSTDGRV  414 (433)
T ss_pred             EEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECC-CCCEEEEEEecCCceEEEEEECCCCc
Confidence            8999999987643  22  36899999776543 222222234556776 6887776554   3468899885443

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=5.5e-13  Score=116.61  Aligned_cols=202  Identities=11%  Similarity=0.118  Sum_probs=131.7

Q ss_pred             cEEeeecCCCeeeEEEecCCCCCcEEEEEeC---CCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEe-eCCC-
Q 024372            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASK---DSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASG-SADF-   83 (268)
Q Consensus         9 ~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~---d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~-s~D~-   83 (268)
                      +..+..+.+++...+|+|   ||+.|+..+.   +..+.+|++.+|+... +....+.+...+|+||++.|+.. +.++ 
T Consensus       191 ~~~lt~~~~~~~~p~wSP---DG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~  266 (429)
T PRK03629        191 QFVVHRSPQPLMSPAWSP---DGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGS  266 (429)
T ss_pred             CEEeecCCCceeeeEEcC---CCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCC
Confidence            344455677888999985   9999987653   3467888998886432 22223334567899999987643 4454 


Q ss_pred             -cEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCC-CeEEEE--ECCCCCCCCeEecCCcccEEEEEEeCCCCc
Q 024372           84 -TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFE-KILRIF--DLNRPDAPPREVGNSSGSIRTVAWLHSDQT  159 (268)
Q Consensus        84 -~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d-~~i~~~--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  159 (268)
                       .|++||+.++.......+...+....|+|+++.|+..+.+ +...+|  |+..+.  ...............|+|++..
T Consensus       267 ~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~--~~~lt~~~~~~~~~~~SpDG~~  344 (429)
T PRK03629        267 LNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA--PQRITWEGSQNQDADVSSDGKF  344 (429)
T ss_pred             cEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC--eEEeecCCCCccCEEECCCCCE
Confidence             5888999887765555455567788999999988766643 444555  554432  2333233334556788998887


Q ss_pred             EEEEeeCC--CeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEe-CCC---eEEEEeCCC
Q 024372          160 ILSSCTDS--GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-DGS---SVKFWDANH  217 (268)
Q Consensus       160 ~~~~~~~d--~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~---~v~~wd~~~  217 (268)
                      ++.++..+  ..|.+||+.+++... +..........|+|||++++.+ .++   .+.++++..
T Consensus       345 Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G  407 (429)
T PRK03629        345 MVMVSSNGGQQHIAKQDLATGGVQV-LTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG  407 (429)
T ss_pred             EEEEEccCCCceEEEEECCCCCeEE-eCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCC
Confidence            76665443  358889998887543 3222223467899999987653 332   367788743

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.62  E-value=1.3e-13  Score=112.55  Aligned_cols=216  Identities=15%  Similarity=0.196  Sum_probs=157.7

Q ss_pred             eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC----eEEEeeCccCcEEEEEecCCC-cEEEEeeCC--CcE
Q 024372           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD----WIGTFEGHKGAVWSCCLDANA-LFSASGSAD--FTA   85 (268)
Q Consensus        13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~----~~~~~~~h~~~V~~~~~~~~~-~~l~s~s~D--~~v   85 (268)
                      +.-+++|.+++..    || .|++|-.+|.+++|..+.+.    .+..+..+ .++..+.-.+.. .++|+||..  ..+
T Consensus       102 ~l~~~~I~gl~~~----dg-~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~l  175 (412)
T KOG3881|consen  102 SLGTKSIKGLKLA----DG-TLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINEL  175 (412)
T ss_pred             ccccccccchhhc----CC-EEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccce
Confidence            4456778788775    55 67788999999999887543    22234434 445555545444 566789988  899


Q ss_pred             EEEeCCCCCeeeeec----------cCCeEEEEEECCC--CCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEE
Q 024372           86 KLWDALTGDEKHSFE----------HKHIVRACAFSED--THLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAW  153 (268)
Q Consensus        86 ~iw~~~~~~~~~~~~----------~~~~v~~v~~~~~--~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~  153 (268)
                      ++||+++.+.+..-.          .+-.++.+.|-+.  ...|++++.-+++|+||...++.+...+.-...+++++..
T Consensus       176 kiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l  255 (412)
T KOG3881|consen  176 KIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGL  255 (412)
T ss_pred             eeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeee
Confidence            999998874433321          1112457788776  7899999999999999998877777777666778999998


Q ss_pred             eCCCCcEEEEeeCCCeEEEEeCCCCceEEe-ecC-CCCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeCCCCc
Q 024372          154 LHSDQTILSSCTDSGGVRLWDARSGKIVQT-LET-KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNT  230 (268)
Q Consensus       154 ~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~-~~~-~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~~~~  230 (268)
                      .|.+. ++.++...+.+..+|+|++..... ++. .+.+.++..+|.+.++++. =|+.|||+|+++.+++.....++..
T Consensus       256 ~p~gn-~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~l  334 (412)
T KOG3881|consen  256 TPSGN-FIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRL  334 (412)
T ss_pred             cCCCc-EEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccc
Confidence            87664 566667779999999999988765 553 4669999999999999865 5999999999987766554444444


Q ss_pred             eeeEE
Q 024372          231 ESASL  235 (268)
Q Consensus       231 ~~~~~  235 (268)
                      ..+.+
T Consensus       335 t~il~  339 (412)
T KOG3881|consen  335 TFILL  339 (412)
T ss_pred             cEEEe
Confidence            44444

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.61  E-value=3.5e-14  Score=116.80  Aligned_cols=192  Identities=19%  Similarity=0.248  Sum_probs=130.9

Q ss_pred             EEEEecCCCcEEEEeeCCCcEEEEeCCCCCe-eeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecC
Q 024372           65 WSCCLDANALFSASGSADFTAKLWDALTGDE-KHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN  143 (268)
Q Consensus        65 ~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~-~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~  143 (268)
                      ..++|+.++..+++|+.||++|+|+...... .....|...|.++.|+||+++|++-+.| ..++|+.+++.........
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            5688999999999999999999999655544 3344688899999999999999999999 8899999876332222111


Q ss_pred             Ccc-cEEEEEEeCCC---CcE-EEEeeCCCeEEEEeCCC--C-ceE---EeecCCCCEEEEEECCCCcEEEEe-CCCeEE
Q 024372          144 SSG-SIRTVAWLHSD---QTI-LSSCTDSGGVRLWDARS--G-KIV---QTLETKSPVTSAEVSRDGRYITTA-DGSSVK  211 (268)
Q Consensus       144 ~~~-~v~~~~~~~~~---~~~-~~~~~~d~~i~iwd~~~--~-~~~---~~~~~~~~v~~~~~s~~g~~l~~~-~~~~v~  211 (268)
                      ... ....+.|..++   ..+ ++.-...+.|+.||+..  + ..+   +.+.....+.+++++++|+|++.+ -++.|-
T Consensus       227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa  306 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA  306 (398)
T ss_pred             ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence            111 22334444332   222 33333335677766532  1 111   222334579999999999999865 489999


Q ss_pred             EEeCCCceeeeEEeC-CC-CceeeEEcCCCCCEEEeccCCCeEEEEECC
Q 024372          212 FWDANHFGLVKGYNM-PC-NTESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (268)
Q Consensus       212 ~wd~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~  258 (268)
                      +++....++++-... +. -+..+.|+| +.+++++-|.|..+.|..+.
T Consensus       307 i~~~~~lq~~~~vk~aH~~~VT~ltF~P-dsr~~~svSs~~~~~v~~l~  354 (398)
T KOG0771|consen  307 IYDAKSLQRLQYVKEAHLGFVTGLTFSP-DSRYLASVSSDNEAAVTKLA  354 (398)
T ss_pred             EEEeceeeeeEeehhhheeeeeeEEEcC-CcCcccccccCCceeEEEEe
Confidence            999987766654443 22 245677777 57777877777777777654

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=8.9e-13  Score=101.74  Aligned_cols=229  Identities=15%  Similarity=0.175  Sum_probs=150.9

Q ss_pred             eeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC-------e-EEEeeCcc-----CcEEEEEecCCCcEEEE
Q 024372           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD-------W-IGTFEGHK-----GAVWSCCLDANALFSAS   78 (268)
Q Consensus        12 ~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~-------~-~~~~~~h~-----~~V~~~~~~~~~~~l~s   78 (268)
                      ..+|.+||+.++|.    |. +|++| .||.|+=|.-...+       + ......|.     ..|.++...|...-+..
T Consensus        58 eqahdgpiy~~~f~----d~-~Lls~-gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~  131 (325)
T KOG0649|consen   58 EQAHDGPIYYLAFH----DD-FLLSG-GDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILF  131 (325)
T ss_pred             ccccCCCeeeeeee----hh-heeec-cCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEE
Confidence            36899999999997    43 45444 45999887543321       1 11122343     34778888887766667


Q ss_pred             eeCCCcEEEEeCCCCCeeeeec-cCCeEEEEEE-CCCCCEEEEeeCCCeEEEEECCCCCCCCeEec----------CCcc
Q 024372           79 GSADFTAKLWDALTGDEKHSFE-HKHIVRACAF-SEDTHLLLTGGFEKILRIFDLNRPDAPPREVG----------NSSG  146 (268)
Q Consensus        79 ~s~D~~v~iw~~~~~~~~~~~~-~~~~v~~v~~-~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~----------~~~~  146 (268)
                      ++.|+.++-||++++...+.+. |.+.|.++.- +.+++ +++|+.||++|+||..+.+.. +.+.          +-..
T Consensus       132 AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~q-ilsG~EDGtvRvWd~kt~k~v-~~ie~yk~~~~lRp~~g~  209 (325)
T KOG0649|consen  132 AGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQ-ILSGAEDGTVRVWDTKTQKHV-SMIEPYKNPNLLRPDWGK  209 (325)
T ss_pred             ecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcc-eeecCCCccEEEEecccccee-EEeccccChhhcCcccCc
Confidence            7789999999999999999885 9999999987 44554 679999999999999865432 1111          1123


Q ss_pred             cEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeE-Ee
Q 024372          147 SIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKG-YN  225 (268)
Q Consensus       147 ~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~-~~  225 (268)
                      +|-+++-+  ..+++ . +....+.+|.+|+.++..+++...++..+.|-.+- .++.+.++.|.-|.+..  .++. .+
T Consensus       210 wigala~~--edWlv-C-GgGp~lslwhLrsse~t~vfpipa~v~~v~F~~d~-vl~~G~g~~v~~~~l~G--vl~a~ip  282 (325)
T KOG0649|consen  210 WIGALAVN--EDWLV-C-GGGPKLSLWHLRSSESTCVFPIPARVHLVDFVDDC-VLIGGEGNHVQSYTLNG--VLQANIP  282 (325)
T ss_pred             eeEEEecc--CceEE-e-cCCCceeEEeccCCCceEEEecccceeEeeeecce-EEEeccccceeeeeecc--EEEEecc
Confidence            45566543  34544 3 33368999999999999999988889888887663 55566677888887642  2221 12


Q ss_pred             C-CCCceeeEEcCCCCCEEEeccCCCeEEEE
Q 024372          226 M-PCNTESASLEPKLGNIFIAGGEDMWVHVF  255 (268)
Q Consensus       226 ~-~~~~~~~~~~~~~~~~~~~gs~d~~i~~w  255 (268)
                      . .....+..+....-+++.+++....+.++
T Consensus       283 ~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  283 VESTACYSASWQTSPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             CCccceeeecccCCceEEEEecccceeeeee
Confidence            2 11223333332223445556665556655

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.60  E-value=2.5e-13  Score=105.86  Aligned_cols=153  Identities=20%  Similarity=0.365  Sum_probs=107.4

Q ss_pred             EEECCCCCEEEEeeC----------CCeEEEEECCCCCCCCeEe-cCCcccEEEEEEeCCCCcEEEE-eeCCCeEEEEeC
Q 024372          108 CAFSEDTHLLLTGGF----------EKILRIFDLNRPDAPPREV-GNSSGSIRTVAWLHSDQTILSS-CTDSGGVRLWDA  175 (268)
Q Consensus       108 v~~~~~~~~l~s~~~----------d~~i~~~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~-~~~d~~i~iwd~  175 (268)
                      +.|+++|..|+.-..          -+...+|-++......... ....++|..++|+|++..+++. |..++.|.|||+
T Consensus        11 ~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~   90 (194)
T PF08662_consen   11 LHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDV   90 (194)
T ss_pred             EEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcC
Confidence            557777765543222          1234555553333333333 2345679999999998876443 445579999999


Q ss_pred             CCCceEEeecCCCCEEEEEECCCCcEEEEeC----CCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccC---
Q 024372          176 RSGKIVQTLETKSPVTSAEVSRDGRYITTAD----GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE---  248 (268)
Q Consensus       176 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~----~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~---  248 (268)
                      + ++.+..+. ...++.+.|+|+|++++.++    .+.|.+||+++.+.+..+... ....+.++| +|++|++++.   
T Consensus        91 ~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~-~~t~~~WsP-dGr~~~ta~t~~r  166 (194)
T PF08662_consen   91 K-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS-DATDVEWSP-DGRYLATATTSPR  166 (194)
T ss_pred             c-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC-cEEEEEEcC-CCCEEEEEEeccc
Confidence            7 66677665 35688999999999987642    467999999988888777654 356777887 6999998764   


Q ss_pred             ---CCeEEEEECCCCcEEee
Q 024372          249 ---DMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       249 ---d~~i~~wd~~~g~~~~~  265 (268)
                         |..+++|++ +|+++..
T Consensus       167 ~~~dng~~Iw~~-~G~~l~~  185 (194)
T PF08662_consen  167 LRVDNGFKIWSF-QGRLLYK  185 (194)
T ss_pred             eeccccEEEEEe-cCeEeEe
Confidence               788999998 5887764

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.60  E-value=4.8e-14  Score=119.36  Aligned_cols=207  Identities=14%  Similarity=0.169  Sum_probs=145.4

Q ss_pred             CcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEEE
Q 024372           31 GFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAF  110 (268)
Q Consensus        31 g~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~  110 (268)
                      ...++.++.||.+.+-+ ..|+.-+....|.+.|.+-.|+|+|.-|+|++.||.|++|.-...-.........+|+|++|
T Consensus        75 ~d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W  153 (737)
T KOG1524|consen   75 SDTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARW  153 (737)
T ss_pred             cceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEE
Confidence            34688899999988765 45666677889999999999999999999999999999998643222222346678999999


Q ss_pred             CCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEee-cCCCC
Q 024372          111 SEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL-ETKSP  189 (268)
Q Consensus       111 ~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~-~~~~~  189 (268)
                      .|+++.++-+- .+.+.+-.+.. ....-....|.|-|.++.|++.. .++++|++|-..+|||.. |+.+.+- .+..+
T Consensus       154 ~p~S~~vl~c~-g~h~~IKpL~~-n~k~i~WkAHDGiiL~~~W~~~s-~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~  229 (737)
T KOG1524|consen  154 APNSNSIVFCQ-GGHISIKPLAA-NSKIIRWRAHDGLVLSLSWSTQS-NIIASGGEDFRFKIWDAQ-GANLFTSAAEEYA  229 (737)
T ss_pred             CCCCCceEEec-CCeEEEeeccc-ccceeEEeccCcEEEEeecCccc-cceeecCCceeEEeeccc-CcccccCChhccc
Confidence            99776544433 23444444432 22334556789999999999866 467778888999999987 4444433 45678


Q ss_pred             EEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEE
Q 024372          190 VTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHV  254 (268)
Q Consensus       190 v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~  254 (268)
                      +.+++|.|+..|++.+. .++|+=..+.+          .+..+++++ +|..++.|...|.+.+
T Consensus       230 ITSva~npd~~~~v~S~-nt~R~~~p~~G----------SifnlsWS~-DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  230 ITSVAFNPEKDYLLWSY-NTARFSSPRVG----------SIFNLSWSA-DGTQATCGTSTGQLIV  282 (737)
T ss_pred             eeeeeeccccceeeeee-eeeeecCCCcc----------ceEEEEEcC-CCceeeccccCceEEE
Confidence            99999999955554443 35552221111          234566776 6888888887776544

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=2.3e-12  Score=112.79  Aligned_cols=212  Identities=16%  Similarity=0.129  Sum_probs=137.9

Q ss_pred             CeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEee---CCCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEE
Q 024372           42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS---ADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL  118 (268)
Q Consensus        42 ~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s---~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~  118 (268)
                      .+.++|..... .+.+..+...+...+|+|||+.++..+   .+..+++|++.+++.......+..+....|+||++.|+
T Consensus       180 ~l~~~d~dg~~-~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La  258 (429)
T PRK03629        180 ELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA  258 (429)
T ss_pred             eEEEEcCCCCC-CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEE
Confidence            56777765443 334445667899999999999887654   34579999998876544433444455688999999887


Q ss_pred             Ee-eCCC--eEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCe--EEEEeCCCCceEEeecCCCCEEEE
Q 024372          119 TG-GFEK--ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG--VRLWDARSGKIVQTLETKSPVTSA  193 (268)
Q Consensus       119 s~-~~d~--~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~--i~iwd~~~~~~~~~~~~~~~v~~~  193 (268)
                      .. +.++  .|.+||+.++.  ..........+....|+|++..++.++..++.  |.++|+.+++..............
T Consensus       259 ~~~~~~g~~~I~~~d~~tg~--~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~  336 (429)
T PRK03629        259 FALSKTGSLNLYVMDLASGQ--IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDA  336 (429)
T ss_pred             EEEcCCCCcEEEEEECCCCC--EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCE
Confidence            54 3344  58888987543  23333333456778999998877666554444  444577776554332223345578


Q ss_pred             EECCCCcEEEE-eC-C--CeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCCC---eEEEEECC
Q 024372          194 EVSRDGRYITT-AD-G--SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDM---WVHVFDFH  258 (268)
Q Consensus       194 ~~s~~g~~l~~-~~-~--~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~---~i~~wd~~  258 (268)
                      .|+|||++++. +. +  ..|.+||+...... .+..........++| +|++++.++.++   .++++++.
T Consensus       337 ~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~~~~~~p~~Sp-DG~~i~~~s~~~~~~~l~~~~~~  406 (429)
T PRK03629        337 DVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDTFLDETPSIAP-NGTMVIYSSSQGMGSVLNLVSTD  406 (429)
T ss_pred             EECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCCCCCCCceECC-CCCEEEEEEcCCCceEEEEEECC
Confidence            89999998764 32 2  46888998776432 232222233556776 699888877665   37888874

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.59  E-value=4.5e-14  Score=109.90  Aligned_cols=242  Identities=13%  Similarity=0.130  Sum_probs=169.0

Q ss_pred             cEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEee-CccCcEEEEEecCCCcEEEEeeCCCcEEE
Q 024372            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE-GHKGAVWSCCLDANALFSASGSADFTAKL   87 (268)
Q Consensus         9 ~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~s~s~D~~v~i   87 (268)
                      .+++++|.+.|+++.|-+   + .+|.+|+.-|-+++|...+.+-...++ .|...|..+..-|+ ..+.+-++|..+.+
T Consensus         7 ~fvLRp~~~~v~s~~fqa---~-~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~l   81 (323)
T KOG0322|consen    7 FFVLRPHSSSVTSVLFQA---N-ERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLIL   81 (323)
T ss_pred             eeEeccccchheehhhcc---c-hhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEE
Confidence            356789999999999974   2 369999999999999999988877888 46778888888886 45688999999999


Q ss_pred             EeCCCCC--------------eeeee-------------c-------c--------------------CCeEEEEEECC-
Q 024372           88 WDALTGD--------------EKHSF-------------E-------H--------------------KHIVRACAFSE-  112 (268)
Q Consensus        88 w~~~~~~--------------~~~~~-------------~-------~--------------------~~~v~~v~~~~-  112 (268)
                      |++....              +...+             .       |                    ...+.+..+.. 
T Consensus        82 w~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~  161 (323)
T KOG0322|consen   82 WTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHA  161 (323)
T ss_pred             EEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccc
Confidence            9985411              00000             0       0                    01133333211 


Q ss_pred             CC-C-EEEEeeCCCeEEEEECCCCCCCC---------eEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCC--CCc
Q 024372          113 DT-H-LLLTGGFEKILRIFDLNRPDAPP---------REVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR--SGK  179 (268)
Q Consensus       113 ~~-~-~l~s~~~d~~i~~~d~~~~~~~~---------~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~--~~~  179 (268)
                      .+ . ++++|-.+|.+-+||+.++....         .....|.+++.++.|.+.-..=+..|- +..+..|.+.  ++.
T Consensus       162 c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga-~dkl~~~Sl~~s~gs  240 (323)
T KOG0322|consen  162 CGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGA-DDKLVMYSLNHSTGS  240 (323)
T ss_pred             ccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCc-cccceeeeeccccCc
Confidence            22 2 45567788999999998752211         112346778899888653322233333 3567788774  343


Q ss_pred             eE--Eeec-CCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCC-CceeeEEcCCCCCEEEeccCCCeEEE
Q 024372          180 IV--QTLE-TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPC-NTESASLEPKLGNIFIAGGEDMWVHV  254 (268)
Q Consensus       180 ~~--~~~~-~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gs~d~~i~~  254 (268)
                      +.  .++. .+..+..+.+-||++.+++ +-|+.||+|..++..++....++. .+.+++|+| +..++++||.|..|.+
T Consensus       241 lq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfsp-d~~lmAaaskD~rISL  319 (323)
T KOG0322|consen  241 LQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSP-DCELMAAASKDARISL  319 (323)
T ss_pred             ccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCC-CCchhhhccCCceEEe
Confidence            32  1222 2456889999999999987 469999999999988887776654 466777777 5789999999999999


Q ss_pred             EEC
Q 024372          255 FDF  257 (268)
Q Consensus       255 wd~  257 (268)
                      |++
T Consensus       320 WkL  322 (323)
T KOG0322|consen  320 WKL  322 (323)
T ss_pred             eec
Confidence            986

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.58  E-value=9.6e-12  Score=99.37  Aligned_cols=171  Identities=14%  Similarity=0.262  Sum_probs=124.4

Q ss_pred             CeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCC-CeeeeeccCC-eEEEEEECC--CCCEE
Q 024372           42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG-DEKHSFEHKH-IVRACAFSE--DTHLL  117 (268)
Q Consensus        42 ~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~-~~~~~~~~~~-~v~~v~~~~--~~~~l  117 (268)
                      ++.|||-...+++.++. -..+|.++.+.++.-.+   -..+.|++|...++ +..+.++... |=.-++..|  +..+|
T Consensus        76 kviIWDD~k~~~i~el~-f~~~I~~V~l~r~riVv---vl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~L  151 (346)
T KOG2111|consen   76 KVIIWDDLKERCIIELS-FNSEIKAVKLRRDRIVV---VLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLL  151 (346)
T ss_pred             eEEEEecccCcEEEEEE-eccceeeEEEcCCeEEE---EecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEE
Confidence            67899988888888886 56789999998764322   24779999998744 3444443211 212333444  33444


Q ss_pred             EE-eeCCCeEEEEECCCCCC-CCeEecCCcccEEEEEEeCCCCcEEEEeeCCCe-EEEEeCCCCceEEeecC---CCCEE
Q 024372          118 LT-GGFEKILRIFDLNRPDA-PPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG-VRLWDARSGKIVQTLET---KSPVT  191 (268)
Q Consensus       118 ~s-~~~d~~i~~~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~-i~iwd~~~~~~~~~~~~---~~~v~  191 (268)
                      |. |..-|.+++-|+..... ....+..|...|.|++.+.+| .++++++..|+ |||||.++|+.++.+..   +..+.
T Consensus       152 afPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~G-t~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy  230 (346)
T KOG2111|consen  152 AFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQG-TLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIY  230 (346)
T ss_pred             EcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCc-cEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEE
Confidence            44 44568999999875443 346777899999999988765 56777777674 89999999999998863   46699


Q ss_pred             EEEECCCCcEEEEe-CCCeEEEEeCCC
Q 024372          192 SAEVSRDGRYITTA-DGSSVKFWDANH  217 (268)
Q Consensus       192 ~~~~s~~g~~l~~~-~~~~v~~wd~~~  217 (268)
                      +++|||+..+|+.+ +.+++.+|.++.
T Consensus       231 ~iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  231 CIAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             EEEeCCCccEEEEEcCCCeEEEEEeec
Confidence            99999999999865 558999998865

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=1.9e-12  Score=113.34  Aligned_cols=202  Identities=16%  Similarity=0.143  Sum_probs=128.7

Q ss_pred             cEEeeecCCCeeeEEEecCCCCCcEEEEEeCCC---CeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEE-EeeCCCc
Q 024372            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDS---SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSA-SGSADFT   84 (268)
Q Consensus         9 ~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~---~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~-s~s~D~~   84 (268)
                      +..+..+.+.+.+.+|+|   ||+.|+..+.+.   .+.+||+.+++... +....+.+...+|+||+..++ +.+.++.
T Consensus       188 ~~~l~~~~~~v~~p~wSP---DG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~  263 (427)
T PRK02889        188 AQSALSSPEPIISPAWSP---DGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGN  263 (427)
T ss_pred             ceEeccCCCCcccceEcC---CCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCC
Confidence            344556788899999985   999998877543   47889999887543 333445566789999998775 5677888


Q ss_pred             EEEEe--CCCCCeeeeeccCCeEEEEEECCCCCEEEEeeC-CCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEE
Q 024372           85 AKLWD--ALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGF-EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTIL  161 (268)
Q Consensus        85 v~iw~--~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~-d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  161 (268)
                      ..||.  ...+.......+........|+|||+.++..+. ++...+|.++......+.............|+|++..++
T Consensus       264 ~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia  343 (427)
T PRK02889        264 SQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLA  343 (427)
T ss_pred             ceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEE
Confidence            77765  444443322233334556789999998876554 456666654322112222222222344568899888776


Q ss_pred             EEeeCCC--eEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEe-C-CC--eEEEEeC
Q 024372          162 SSCTDSG--GVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-D-GS--SVKFWDA  215 (268)
Q Consensus       162 ~~~~~d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~-~~--~v~~wd~  215 (268)
                      .++...+  .|.+||+.+++...... ........|+|||++++.+ . ++  .+.+.++
T Consensus       344 ~~s~~~g~~~I~v~d~~~g~~~~lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~  402 (427)
T PRK02889        344 YISRVGGAFKLYVQDLATGQVTALTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS  402 (427)
T ss_pred             EEEccCCcEEEEEEECCCCCeEEccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence            6554433  69999999887544332 2334678999999987643 2 22  3455555

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.58  E-value=4.8e-13  Score=117.93  Aligned_cols=220  Identities=12%  Similarity=0.112  Sum_probs=154.0

Q ss_pred             CCeEEeeCCCC-CeEEEeeCccCcEEEEEecCCC-cEEEEeeCCCcEEEEeCCCCCe-------eeeeccCCeEEEEEEC
Q 024372           41 SSPMLRNGETG-DWIGTFEGHKGAVWSCCLDANA-LFSASGSADFTAKLWDALTGDE-------KHSFEHKHIVRACAFS  111 (268)
Q Consensus        41 ~~i~iw~~~~~-~~~~~~~~h~~~V~~~~~~~~~-~~l~s~s~D~~v~iw~~~~~~~-------~~~~~~~~~v~~v~~~  111 (268)
                      +.+.+|+.... +.-..+. -...|.++.|+|.. .++|.|..+|+|-+||+..+..       ...-.|..++..+.|-
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~  300 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL  300 (555)
T ss_pred             ceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence            46788988765 3333343 35689999999865 5678888999999999976554       1223478888888885


Q ss_pred             CCC--CEEEEeeCCCeEEEEECCCCCCCCe-----E------ecCCcccEEEEEEeCCCCcEEEEeeCCCeEEE---EeC
Q 024372          112 EDT--HLLLTGGFEKILRIFDLNRPDAPPR-----E------VGNSSGSIRTVAWLHSDQTILSSCTDSGGVRL---WDA  175 (268)
Q Consensus       112 ~~~--~~l~s~~~d~~i~~~d~~~~~~~~~-----~------~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~i---wd~  175 (268)
                      .+.  .-+++++.||.|..|+++.-..+..     .      .......++++.|.+.+...++.|+++|.|.-   ++.
T Consensus       301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~  380 (555)
T KOG1587|consen  301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY  380 (555)
T ss_pred             ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence            533  4589999999999998753211110     0      01122357889998888888999999998876   344


Q ss_pred             CCCce-----EEee-cCCCCEEEEEECCCCc-EEEEeCCCeEEEEeCC-CceeeeEEeCCCC-ceeeEEcCCCCCEEEec
Q 024372          176 RSGKI-----VQTL-ETKSPVTSAEVSRDGR-YITTADGSSVKFWDAN-HFGLVKGYNMPCN-TESASLEPKLGNIFIAG  246 (268)
Q Consensus       176 ~~~~~-----~~~~-~~~~~v~~~~~s~~g~-~l~~~~~~~v~~wd~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g  246 (268)
                      +.+..     +..+ .+.+++.++.++|=+. ++.++.|-+|+||... ...++-.+..+.. ...++|+|--...|+++
T Consensus       381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~  460 (555)
T KOG1587|consen  381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATV  460 (555)
T ss_pred             cccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEE
Confidence            43331     1122 2457899999999764 4455568899999987 5555555544444 56788888667799999


Q ss_pred             cCCCeEEEEECCCCc
Q 024372          247 GEDMWVHVFDFHTGE  261 (268)
Q Consensus       247 s~d~~i~~wd~~~g~  261 (268)
                      ..||.|.+||+....
T Consensus       461 d~~G~l~iWDLl~~~  475 (555)
T KOG1587|consen  461 DGDGNLDIWDLLQDD  475 (555)
T ss_pred             cCCCceehhhhhccc
Confidence            999999999986443

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.57  E-value=1.1e-12  Score=106.44  Aligned_cols=157  Identities=16%  Similarity=0.156  Sum_probs=119.0

Q ss_pred             CCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeC---ccCcEEEEEecCCCcEEEEee--CCCcEEEEeC
Q 024372           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG---HKGAVWSCCLDANALFSASGS--ADFTAKLWDA   90 (268)
Q Consensus        16 ~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~---h~~~V~~~~~~~~~~~l~s~s--~D~~v~iw~~   90 (268)
                      ..+|.++.++     .+.|+..-.+. |.|||+++.++++++..   |...+.++++++.+.++|--+  .-|.|.+||.
T Consensus        87 pt~IL~VrmN-----r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~  160 (391)
T KOG2110|consen   87 PTSILAVRMN-----RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDT  160 (391)
T ss_pred             CCceEEEEEc-----cceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEc
Confidence            4467777774     56777676666 99999999999988864   445576666677777887533  3589999999


Q ss_pred             CCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCe-EEEEECCCCCCCCeEec-CCcccEEEEEEeCCCCcEEEEeeCC
Q 024372           91 LTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKI-LRIFDLNRPDAPPREVG-NSSGSIRTVAWLHSDQTILSSCTDS  167 (268)
Q Consensus        91 ~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~-i~~~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~d  167 (268)
                      .+-+....+. |+.++-+++|+++|.+|||++..|+ ||+|.+.+++...+.-. ..-..|.+++|+++.+.+.+++ ..
T Consensus       161 ~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS-~T  239 (391)
T KOG2110|consen  161 INLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASS-NT  239 (391)
T ss_pred             ccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEec-CC
Confidence            9988888775 9999999999999999999998887 78999987654433221 1233578899999887655554 55


Q ss_pred             CeEEEEeCCCCc
Q 024372          168 GGVRLWDARSGK  179 (268)
Q Consensus       168 ~~i~iwd~~~~~  179 (268)
                      ++|.||-+++..
T Consensus       240 eTVHiFKL~~~~  251 (391)
T KOG2110|consen  240 ETVHIFKLEKVS  251 (391)
T ss_pred             CeEEEEEecccc
Confidence            899999887544

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.57  E-value=3.1e-15  Score=132.16  Aligned_cols=208  Identities=20%  Similarity=0.298  Sum_probs=149.3

Q ss_pred             CeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEE
Q 024372           52 DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFD  130 (268)
Q Consensus        52 ~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d  130 (268)
                      +.+..|.||.+.|+++.|...|.++.+|+.|..+|||..++..+..... |...++.++.+.+..++++++.|..|++|-
T Consensus       181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr  260 (1113)
T KOG0644|consen  181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR  260 (1113)
T ss_pred             HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence            4566778999999999999999999999999999999999988887774 888899999999999999999999999999


Q ss_pred             CCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEee------cCCC----------------
Q 024372          131 LNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL------ETKS----------------  188 (268)
Q Consensus       131 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~------~~~~----------------  188 (268)
                      +.++. +...+.+|.|.|++++|+|-.     ++++||++++||.|- ..+...      ....                
T Consensus       261 l~~~~-pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~-~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~T  333 (1113)
T KOG0644|consen  261 LPDGA-PVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARL-EPRIYVPRPLKFTEKDLVDSILFENNGDRFLT  333 (1113)
T ss_pred             cCCCc-hHHHHhccccceeeeccCccc-----cCCCCCceEeccccc-cccccCCCCCCcccccceeeeecccccccccc
Confidence            98764 445566789999999998843     567889999999981 111110      0001                


Q ss_pred             ----------CEEEEEECCCCcEEEE-----------e-CCCeEEEEeCCCceeeeEEeCCCC-ceeeEEcCCCCCEEEe
Q 024372          189 ----------PVTSAEVSRDGRYITT-----------A-DGSSVKFWDANHFGLVKGYNMPCN-TESASLEPKLGNIFIA  245 (268)
Q Consensus       189 ----------~v~~~~~s~~g~~l~~-----------~-~~~~v~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  245 (268)
                                .+..+++..++..++.           + .+-.+.+|++-.+.++.....+.. ...+.++|-+.+.-.+
T Consensus       334 gs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~ms  413 (1113)
T KOG0644|consen  334 GSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMS  413 (1113)
T ss_pred             ccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhh
Confidence                      1112222222222221           1 122456677766654444443333 3455666655566668


Q ss_pred             ccCCCeEEEEECCCCcEEeec
Q 024372          246 GGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       246 gs~d~~i~~wd~~~g~~~~~~  266 (268)
                      ++.||...+||.-.|.++..+
T Consensus       414 ag~dgst~iwdi~eg~pik~y  434 (1113)
T KOG0644|consen  414 AGYDGSTIIWDIWEGIPIKHY  434 (1113)
T ss_pred             ccCCCceEeeecccCCcceee
Confidence            999999999999888888765

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.56  E-value=8.8e-12  Score=101.25  Aligned_cols=244  Identities=16%  Similarity=0.164  Sum_probs=161.3

Q ss_pred             eecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCC-CC---Ce----------EEEeeCccCcEEEEEecCC
Q 024372            7 AVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGE-TG---DW----------IGTFEGHKGAVWSCCLDAN   72 (268)
Q Consensus         7 ~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~-~~---~~----------~~~~~~h~~~V~~~~~~~~   72 (268)
                      .++++-+--...|.+++|.|.+  +.-|+.|.+.|-+ +|... +.   +.          +..-.|| .+|.+++|.+|
T Consensus       131 ~pt~Lks~sQrnvtclawRPls--aselavgCr~gIc-iW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~d  206 (445)
T KOG2139|consen  131 CPTKLKSVSQRNVTCLAWRPLS--ASELAVGCRAGIC-IWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNED  206 (445)
T ss_pred             CCceecchhhcceeEEEeccCC--cceeeeeecceeE-EEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCC
Confidence            3344334566789999999964  4588889888765 56432 21   21          1222455 68999999999


Q ss_pred             CcEEEEee-CCCcEEEEeCCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEE
Q 024372           73 ALFSASGS-ADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRT  150 (268)
Q Consensus        73 ~~~l~s~s-~D~~v~iw~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~  150 (268)
                      +..+++++ .|..|+|||..++....... ....+.-+.|+||+.+|+++.-|+..++|+.+......+ .....+.+..
T Consensus       207 gt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~er-w~lgsgrvqt  285 (445)
T KOG2139|consen  207 GTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKER-WILGSGRVQT  285 (445)
T ss_pred             CCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecc-eeccCCceee
Confidence            99999998 57889999999888766553 334577899999999999999999999997543222212 2223458888


Q ss_pred             EEEeCCCCcEEEEeeCCCeEEEEeCCC-Cc-----------eE---Eeec------C----CCCEEEEEECCCCcEEEEe
Q 024372          151 VAWLHSDQTILSSCTDSGGVRLWDARS-GK-----------IV---QTLE------T----KSPVTSAEVSRDGRYITTA  205 (268)
Q Consensus       151 ~~~~~~~~~~~~~~~~d~~i~iwd~~~-~~-----------~~---~~~~------~----~~~v~~~~~s~~g~~l~~~  205 (268)
                      ..|+|.|..++.+++.  .-+++.+.- ++           .+   ..++      .    .++..+++|.|.|.+++..
T Consensus       286 acWspcGsfLLf~~sg--sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~  363 (445)
T KOG2139|consen  286 ACWSPCGSFLLFACSG--SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVI  363 (445)
T ss_pred             eeecCCCCEEEEEEcC--CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEE
Confidence            9999999988888764  445554321 11           00   0011      0    2468899999999999875


Q ss_pred             CC---------CeEEEEeCCCceeeeE----EeCCCCceeeEE--cCCCCCEEEeccCCCeEEEEEC
Q 024372          206 DG---------SSVKFWDANHFGLVKG----YNMPCNTESASL--EPKLGNIFIAGGEDMWVHVFDF  257 (268)
Q Consensus       206 ~~---------~~v~~wd~~~~~~~~~----~~~~~~~~~~~~--~~~~~~~~~~gs~d~~i~~wd~  257 (268)
                      -.         ..|.+||.++.-.+..    +...+.+..++|  ..+.+.+|.+|=.-|.|.-|++
T Consensus       364 fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl  430 (445)
T KOG2139|consen  364 FKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPL  430 (445)
T ss_pred             EcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeee
Confidence            32         2467788876433221    112223334444  4456778887766666777765

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.55  E-value=5.1e-11  Score=101.79  Aligned_cols=189  Identities=14%  Similarity=0.154  Sum_probs=130.2

Q ss_pred             cEE-EEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEEE
Q 024372           32 FFL-VSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAF  110 (268)
Q Consensus        32 ~~l-~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~  110 (268)
                      +++ ++-..++++.+.|..+.+.+.++....+.-..+.++||+++++.+++|+.|.++|+.+.+.+.++........+++
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~   85 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAV   85 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEE
Confidence            344 4556789999999999999999986555444567999999998889999999999999999999988888899999


Q ss_pred             CCCCCEEEEee-CCCeEEEEECCCCCCCCeEecC-------CcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceE-
Q 024372          111 SEDTHLLLTGG-FEKILRIFDLNRPDAPPREVGN-------SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIV-  181 (268)
Q Consensus       111 ~~~~~~l~s~~-~d~~i~~~d~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~-  181 (268)
                      ++||+++++++ ..+.+.++|.++-+.. +.+..       ....+..+..+|....++++--+-+.|.+-|....+.+ 
T Consensus        86 s~DG~~~~v~n~~~~~v~v~D~~tle~v-~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~  164 (369)
T PF02239_consen   86 SPDGKYVYVANYEPGTVSVIDAETLEPV-KTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK  164 (369)
T ss_dssp             --TTTEEEEEEEETTEEEEEETTT--EE-EEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE
T ss_pred             cCCCCEEEEEecCCCceeEeccccccce-eecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc
Confidence            99999998776 6899999998754322 22211       22345666667777656666555588888898766543 


Q ss_pred             -EeecCCCCEEEEEECCCCcEEEEe--CCCeEEEEeCCCceee
Q 024372          182 -QTLETKSPVTSAEVSRDGRYITTA--DGSSVKFWDANHFGLV  221 (268)
Q Consensus       182 -~~~~~~~~v~~~~~s~~g~~l~~~--~~~~v~~wd~~~~~~~  221 (268)
                       ..+..........|+|+++++..+  .++.|-++|.++.+.+
T Consensus       165 ~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v  207 (369)
T PF02239_consen  165 VTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLV  207 (369)
T ss_dssp             EEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEE
T ss_pred             eeeecccccccccccCcccceeeecccccceeEEEeeccceEE
Confidence             345555567889999999987553  3457777777655443

...

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.53  E-value=1.7e-11  Score=107.05  Aligned_cols=217  Identities=18%  Similarity=0.142  Sum_probs=138.1

Q ss_pred             CeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCC---CcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEE
Q 024372           42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD---FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL  118 (268)
Q Consensus        42 ~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D---~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~  118 (268)
                      .+.++|.. +.....+..+...+...+|+|++++++..+.+   ..|++||+.++.......+...+....|+|+++.|+
T Consensus       171 ~l~~~d~~-g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~  249 (417)
T TIGR02800       171 ELQVADYD-GANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLA  249 (417)
T ss_pred             eEEEEcCC-CCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEE
Confidence            45666764 33344565677789999999999998876543   579999998886655444555666789999998776


Q ss_pred             E-eeCCC--eEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCC--eEEEEeCCCCceEEeecCCCCEEEE
Q 024372          119 T-GGFEK--ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG--GVRLWDARSGKIVQTLETKSPVTSA  193 (268)
Q Consensus       119 s-~~~d~--~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~v~~~  193 (268)
                      . .+.++  .|.+||+.++.  ......+.+......|++++..++.++...+  .|.++|+.+++..............
T Consensus       250 ~~~~~~~~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~  327 (417)
T TIGR02800       250 VSLSKDGNPDIYVMDLDGKQ--LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASP  327 (417)
T ss_pred             EEECCCCCccEEEEECCCCC--EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCe
Confidence            4 44443  58888886543  2233333333445688888877766554333  5888898877754433333446678


Q ss_pred             EECCCCcEEEEe-CCC---eEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCC---CeEEEEECCCCcEEe
Q 024372          194 EVSRDGRYITTA-DGS---SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGED---MWVHVFDFHTGEQIA  264 (268)
Q Consensus       194 ~~s~~g~~l~~~-~~~---~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d---~~i~~wd~~~g~~~~  264 (268)
                      .|+|+|++++.. .+.   .|.+||+..... +.+..........+.+ ++++|+..+.+   ..+++.+. +|+...
T Consensus       328 ~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~p~~sp-dg~~l~~~~~~~~~~~l~~~~~-~g~~~~  402 (417)
T TIGR02800       328 SWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDTGLDESPSFAP-NGRMILYATTRGGRGVLGLVST-DGRFRA  402 (417)
T ss_pred             EECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCCCCCCCceECC-CCCEEEEEEeCCCcEEEEEEEC-CCceee
Confidence            999999987654 332   688899876432 2222222233446666 57777765543   24666664 354443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.53  E-value=7.2e-13  Score=103.28  Aligned_cols=112  Identities=19%  Similarity=0.276  Sum_probs=90.9

Q ss_pred             ecCCCeeeEEEecCCCCCcEEEEE--eCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCC---CcEEEE
Q 024372           14 GHSRPVVDLFYSPITPDGFFLVSA--SKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD---FTAKLW   88 (268)
Q Consensus        14 ~h~~~v~~~~f~~~~~dg~~l~s~--s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D---~~v~iw   88 (268)
                      ...++|.+++|+|   +|+.+|..  ..+..+.+||++ ++.+.++.  ...+..+.|+|+|++++.++.+   |.+.+|
T Consensus        57 ~~~~~I~~~~WsP---~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~w  130 (194)
T PF08662_consen   57 KKEGPIHDVAWSP---NGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFW  130 (194)
T ss_pred             cCCCceEEEEECc---CCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEE
Confidence            4556899999996   77776544  467799999996 77777774  5677889999999999988754   669999


Q ss_pred             eCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeC------CCeEEEEECC
Q 024372           89 DALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGF------EKILRIFDLN  132 (268)
Q Consensus        89 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~------d~~i~~~d~~  132 (268)
                      |..+.+.+....|.. +..++|+|+|+.++++..      |+.+++|+..
T Consensus       131 d~~~~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  131 DVRKKKKISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             ECCCCEEeeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence            999888888877765 678999999999998764      6888999874

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.52  E-value=6.4e-12  Score=100.95  Aligned_cols=217  Identities=14%  Similarity=0.142  Sum_probs=141.4

Q ss_pred             eCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcE-EEEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCE
Q 024372           38 SKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALF-SASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHL  116 (268)
Q Consensus        38 s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~-l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~  116 (268)
                      ..|+.|++|++...++...+..-.+++.+++|+|+|+. |.+..-|-.|.+|.+.+.......-.+..+..++|+|++++
T Consensus        68 yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f  147 (447)
T KOG4497|consen   68 YKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQF  147 (447)
T ss_pred             eccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCce
Confidence            67779999999999999999888889999999999965 56777899999999988776554434455677788888877


Q ss_pred             EEEeeCCCe------------------------------------EEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcE
Q 024372          117 LLTGGFEKI------------------------------------LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTI  160 (268)
Q Consensus       117 l~s~~~d~~------------------------------------i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  160 (268)
                      .+-.+....                                    +-+||---+-..  ...+-.-.+..+.|+|.++ +
T Consensus       148 ~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv--~aYe~~lG~k~v~wsP~~q-f  224 (447)
T KOG4497|consen  148 CAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKV--YAYERGLGLKFVEWSPCNQ-F  224 (447)
T ss_pred             eeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhhee--eeeeeccceeEEEeccccc-e
Confidence            665543211                                    112221000000  0111112467789998776 5


Q ss_pred             EEEeeCCCeEEEEeCCCCce------------------------------------------------------------
Q 024372          161 LSSCTDSGGVRLWDARSGKI------------------------------------------------------------  180 (268)
Q Consensus       161 ~~~~~~d~~i~iwd~~~~~~------------------------------------------------------------  180 (268)
                      ++.|+.|+.+|+.+--+=+.                                                            
T Consensus       225 lavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~  304 (447)
T KOG4497|consen  225 LAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVK  304 (447)
T ss_pred             EEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhccee
Confidence            66677888888753221000                                                            


Q ss_pred             EEeecC-------CCCEEEEEECCCCcEEEEeCC---CeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCCC
Q 024372          181 VQTLET-------KSPVTSAEVSRDGRYITTADG---SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDM  250 (268)
Q Consensus       181 ~~~~~~-------~~~v~~~~~s~~g~~l~~~~~---~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~  250 (268)
                      +++++.       ...+..++|++|..|+++-.|   ..+-+||+++.+.....-..+++....+.|...+ ++.+....
T Consensus       305 ~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~pr-L~vctg~s  383 (447)
T KOG4497|consen  305 VHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPR-LVVCTGKS  383 (447)
T ss_pred             eecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCce-EEEEcCCc
Confidence            000000       013567899999999988765   4689999998765544444566778888885444 44444444


Q ss_pred             eEEEEECC
Q 024372          251 WVHVFDFH  258 (268)
Q Consensus       251 ~i~~wd~~  258 (268)
                      .+|+|-..
T Consensus       384 rLY~W~ps  391 (447)
T KOG4497|consen  384 RLYFWAPS  391 (447)
T ss_pred             eEEEEcCC
Confidence            59999753

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.52  E-value=8.1e-13  Score=106.29  Aligned_cols=188  Identities=15%  Similarity=0.210  Sum_probs=133.0

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCeeeeec-cCCeEEEEEECC--CCCEEEEeeCCCeEEEEECCCCCCCCeEec-CCc-ccE
Q 024372           74 LFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSE--DTHLLLTGGFEKILRIFDLNRPDAPPREVG-NSS-GSI  148 (268)
Q Consensus        74 ~~l~s~s~D~~v~iw~~~~~~~~~~~~-~~~~v~~v~~~~--~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~-~~~-~~v  148 (268)
                      ..+|.+-..|.|+++|..+++.+..+. ++..++.+.|..  .+..+.+|+.||+||+||++......+... .+. .+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            456777789999999999988888775 555666676644  566889999999999999987654444332 222 356


Q ss_pred             EEEEEeCCCCcEEEEeeC----CCeEEEEeCCCCce-EEeec--CCCCEEEEEECCCC-cEEEE-eCCCeEEEEeCCCc-
Q 024372          149 RTVAWLHSDQTILSSCTD----SGGVRLWDARSGKI-VQTLE--TKSPVTSAEVSRDG-RYITT-ADGSSVKFWDANHF-  218 (268)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~----d~~i~iwd~~~~~~-~~~~~--~~~~v~~~~~s~~g-~~l~~-~~~~~v~~wd~~~~-  218 (268)
                      .+++.... ..+++.|+.    +-.|.+||+|..+. +..+.  |+..|.++.|+|.. ++|++ +.||.|.+||++.. 
T Consensus       121 ~~ld~nck-~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~  199 (376)
T KOG1188|consen  121 ICLDLNCK-KNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN  199 (376)
T ss_pred             eEeeccCc-CCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence            66665433 345555432    34799999999877 66553  55679999999975 45554 56999999998653 


Q ss_pred             ---eeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcE
Q 024372          219 ---GLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ  262 (268)
Q Consensus       219 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~  262 (268)
                         .++..++....+-.+.|..+--+.+.+-+..+..++|+.+.|.+
T Consensus       200 EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~  246 (376)
T KOG1188|consen  200 EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE  246 (376)
T ss_pred             chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCCh
Confidence               23455665555556677664334677888888899999877664

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.51  E-value=7.7e-13  Score=114.87  Aligned_cols=194  Identities=16%  Similarity=0.230  Sum_probs=144.2

Q ss_pred             cEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEe
Q 024372           63 AVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV  141 (268)
Q Consensus        63 ~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~  141 (268)
                      .|..++|.|||..++-+. +..+.++|.+.+....++. |++.|.+++|+.||+.+++|+.|+.+.+|...-+   -...
T Consensus        14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE---G~Lk   89 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE---GILK   89 (1081)
T ss_pred             chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccc---ceee
Confidence            789999999998765543 5589999999998888774 9999999999999999999999999999985322   2233


Q ss_pred             cCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEe-CCCeEEEEeCCCcee
Q 024372          142 GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGL  220 (268)
Q Consensus       142 ~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~  220 (268)
                      ..|.+.|.|+.|+|-.. .+++|+- ...-+|..... .+........+++++|..||.+++.| .+|+|.+=+....+.
T Consensus        90 YSH~D~IQCMsFNP~~h-~LasCsL-sdFglWS~~qK-~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek  166 (1081)
T KOG1538|consen   90 YSHNDAIQCMSFNPITH-QLASCSL-SDFGLWSPEQK-SVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEK  166 (1081)
T ss_pred             eccCCeeeEeecCchHH-Hhhhcch-hhccccChhhh-hHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcc
Confidence            46788999999998664 4666665 56778987643 34445556789999999999999876 688988865432222


Q ss_pred             eeEEe---CCCCceeeEEcCCCC----CEEEeccCCCeEEEEECCCCcEEe
Q 024372          221 VKGYN---MPCNTESASLEPKLG----NIFIAGGEDMWVHVFDFHTGEQIA  264 (268)
Q Consensus       221 ~~~~~---~~~~~~~~~~~~~~~----~~~~~gs~d~~i~~wd~~~g~~~~  264 (268)
                      ++.-.   -++++.+++++|..|    +.++......++.+|.+ +|++|.
T Consensus       167 ~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Ig  216 (1081)
T KOG1538|consen  167 VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIG  216 (1081)
T ss_pred             eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceeec
Confidence            22211   245677888887543    46777777788888876 477665

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.50  E-value=9.2e-13  Score=112.49  Aligned_cols=184  Identities=21%  Similarity=0.277  Sum_probs=142.7

Q ss_pred             eeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeee
Q 024372           19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHS   98 (268)
Q Consensus        19 v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~   98 (268)
                      -.+++++-.+-   =|.+++....|.=.+++.|+++..|....+.++.|.+.+-..+++.|..||.|-+||..+......
T Consensus       136 GRDm~y~~~sc---Dly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~  212 (703)
T KOG2321|consen  136 GRDMKYHKPSC---DLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGT  212 (703)
T ss_pred             CccccccCCCc---cEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhhee
Confidence            34666664332   244455555666679999999999998889999999999999999999999999999877665444


Q ss_pred             ec-------cCC-----eEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCC-CcEEEEee
Q 024372           99 FE-------HKH-----IVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSD-QTILSSCT  165 (268)
Q Consensus        99 ~~-------~~~-----~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~  165 (268)
                      +.       ++.     .|+++.|+.+|-.++.|..+|.+.+||++..+........-.-+|..+.|.+.+ +..+++. 
T Consensus       213 l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-  291 (703)
T KOG2321|consen  213 LDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-  291 (703)
T ss_pred             eecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-
Confidence            42       222     389999999999999999999999999997655444433445578888887653 3445554 


Q ss_pred             CCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEeC
Q 024372          166 DSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTAD  206 (268)
Q Consensus       166 ~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  206 (268)
                      +...++|||-.+|+.+..++....++.+++-|++-++..+.
T Consensus       292 Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~An  332 (703)
T KOG2321|consen  292 DKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTAN  332 (703)
T ss_pred             chHHhhhcccccCCceeeccccCCcCceeeecCCceEEEec
Confidence            44899999999999999998888899999999977766654

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.49  E-value=8e-12  Score=102.51  Aligned_cols=249  Identities=13%  Similarity=0.134  Sum_probs=168.1

Q ss_pred             ceeeecEEeee--cCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEee--CccCcEEEEEecCCCcEEEEe
Q 024372            4 RKVAVPLVCHG--HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE--GHKGAVWSCCLDANALFSASG   79 (268)
Q Consensus         4 ~~~~~~~~~~~--h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~--~h~~~V~~~~~~~~~~~l~s~   79 (268)
                      +|++||+-+.+  |...|.+|+|+-   ....|.+|.++++++..|+++.+.+..+.  ...+.|+.+..+|....+++.
T Consensus        91 ~k~~KPI~~~~~~H~SNIF~L~F~~---~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~  167 (609)
T KOG4227|consen   91 RKTPKPIGVMEHPHRSNIFSLEFDL---ENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVV  167 (609)
T ss_pred             hcCCCCceeccCccccceEEEEEcc---CCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEE
Confidence            57788988854  667899999983   56789999999999999999998887664  234589999999998899999


Q ss_pred             eCCCcEEEEeCCCCCe----eeeeccCCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCCCeEec---CCcc---cE
Q 024372           80 SADFTAKLWDALTGDE----KHSFEHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVG---NSSG---SI  148 (268)
Q Consensus        80 s~D~~v~iw~~~~~~~----~~~~~~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~---~~~~---~v  148 (268)
                      +.++.|-+||....+.    ......+.....+.|+| ...+|++.+..+-+.+||.+.+....-..+   ....   .-
T Consensus       168 t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~  247 (609)
T KOG4227|consen  168 TRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEW  247 (609)
T ss_pred             ecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhh
Confidence            9999999999976552    22223445567788999 567888888888899999876543221111   1111   11


Q ss_pred             EEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceE-EeecCC-------CCEEEEEECCCCcEEEEeCCCeEEEEeCCC---
Q 024372          149 RTVAWLHSDQTILSSCTDSGGVRLWDARSGKIV-QTLETK-------SPVTSAEVSRDGRYITTADGSSVKFWDANH---  217 (268)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~-~~~~~~-------~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~---  217 (268)
                      ..+.|+|.+..+++ .-....-.+||+-+.+|. .++.+.       ..+.+++|..|...+.++++-.|.+|.+-.   
T Consensus       248 M~~~~~~~G~Q~ms-iRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~d  326 (609)
T KOG4227|consen  248 MGSLWSPSGNQFMS-IRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRAND  326 (609)
T ss_pred             hheeeCCCCCeehh-hhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCcc
Confidence            35678887655443 333344567888776653 334332       246677888887755556677899998731   


Q ss_pred             -cee-------------------eeEEeCCC-CceeeEEcCCCCCEEEeccCCCeEEEEEC
Q 024372          218 -FGL-------------------VKGYNMPC-NTESASLEPKLGNIFIAGGEDMWVHVFDF  257 (268)
Q Consensus       218 -~~~-------------------~~~~~~~~-~~~~~~~~~~~~~~~~~gs~d~~i~~wd~  257 (268)
                       +.-                   +..+..+. -+..+.|.+ -..++++.|-...+++|.-
T Consensus       327 s~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~-H~~~l~SSGVE~~~KlWS~  386 (609)
T KOG4227|consen  327 SYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQ-HNNLLVSSGVENSFKLWSD  386 (609)
T ss_pred             ccCccccCcchhhCchhheecceeEEEecccccccceeecC-CcceEeccchhhheecccc
Confidence             210                   00111111 122344554 4678888888899999964

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.48  E-value=5.5e-14  Score=117.05  Aligned_cols=190  Identities=15%  Similarity=0.189  Sum_probs=146.5

Q ss_pred             CCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCe
Q 024372           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE   95 (268)
Q Consensus        16 ~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~   95 (268)
                      .+.|.++.|-.   +-+++| ...-.-+.|||- .|.-++.++.| ..|..+.|-|-..+|++++..|.++--|+.+++.
T Consensus       170 ~Etv~Dv~~LH---neq~~A-VAQK~y~yvYD~-~GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gkl  243 (545)
T KOG1272|consen  170 METVRDVTFLH---NEQFFA-VAQKKYVYVYDN-NGTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKL  243 (545)
T ss_pred             hhhhhhhhhhc---chHHHH-hhhhceEEEecC-CCcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhh
Confidence            34566666642   223444 445566678874 46667777766 5788899999999999999999999999999998


Q ss_pred             eeeecc-CCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEe
Q 024372           96 KHSFEH-KHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD  174 (268)
Q Consensus        96 ~~~~~~-~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd  174 (268)
                      +..+.. ...+..++-+|-.-++-+|...|++.+|.....+.+ ..+..|.++|.++++.+.|.+++ +.+-|+.++|||
T Consensus       244 Va~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePL-vKiLcH~g~V~siAv~~~G~YMa-TtG~Dr~~kIWD  321 (545)
T KOG1272|consen  244 VASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPL-VKILCHRGPVSSIAVDRGGRYMA-TTGLDRKVKIWD  321 (545)
T ss_pred             hHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchH-HHHHhcCCCcceEEECCCCcEEe-ecccccceeEee
Confidence            887764 346777888998889999999999999998765543 44457889999999988776555 545669999999


Q ss_pred             CCCCceEEeecCCCCEEEEEECCCCcEEEEeCCCeEEEEe
Q 024372          175 ARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWD  214 (268)
Q Consensus       175 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~~wd  214 (268)
                      +|....++++....+...+++|.-| +|+.+.+..|.+|.
T Consensus       322 lR~~~ql~t~~tp~~a~~ls~Sqkg-lLA~~~G~~v~iw~  360 (545)
T KOG1272|consen  322 LRNFYQLHTYRTPHPASNLSLSQKG-LLALSYGDHVQIWK  360 (545)
T ss_pred             eccccccceeecCCCcccccccccc-ceeeecCCeeeeeh
Confidence            9999988877665667788888777 56677777999995

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.48  E-value=1.8e-11  Score=104.82  Aligned_cols=238  Identities=14%  Similarity=0.163  Sum_probs=159.6

Q ss_pred             ecCCCeeeEEEecCCCCCcEEEEEeCCC-CeEEeeCCCCCeE----------------------------EEeeCcc---
Q 024372           14 GHSRPVVDLFYSPITPDGFFLVSASKDS-SPMLRNGETGDWI----------------------------GTFEGHK---   61 (268)
Q Consensus        14 ~h~~~v~~~~f~~~~~dg~~l~s~s~d~-~i~iw~~~~~~~~----------------------------~~~~~h~---   61 (268)
                      +|+..-+.+..+   |||+||.+.+.-+ .|++||+..-.+.                            +++.-|.   
T Consensus        49 e~p~ast~ik~s---~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G  125 (703)
T KOG2321|consen   49 EMPTASTRIKVS---PDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG  125 (703)
T ss_pred             CCccccceeEec---CCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcC
Confidence            466666677776   5999876655444 7889987643211                            0111110   


Q ss_pred             ----CcE----EEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeeccC-CeEEEEEECCCCCEEEEeeCCCeEEEEECC
Q 024372           62 ----GAV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHK-HIVRACAFSEDTHLLLTGGFEKILRIFDLN  132 (268)
Q Consensus        62 ----~~V----~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~-~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~  132 (268)
                          -.|    +.++++.-+.=|..++....|+-.+++.|.-+..+... ..+++|..++-..+|++|+.+|.+-.||.+
T Consensus       126 ~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR  205 (703)
T KOG2321|consen  126 RHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPR  205 (703)
T ss_pred             eeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecch
Confidence                011    22223221222334444456777777777666666544 679999999988899999999999999987


Q ss_pred             CCCCCCeE-----ecCC-----cccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecC--CCCEEEEEECCC--
Q 024372          133 RPDAPPRE-----VGNS-----SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET--KSPVTSAEVSRD--  198 (268)
Q Consensus       133 ~~~~~~~~-----~~~~-----~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~--~~~v~~~~~s~~--  198 (268)
                      +.......     ...+     ...|+++.|..+ +.-++.|+..|.+.|+|+|+.+++..-.+  ..++..+.|-+.  
T Consensus       206 ~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~-gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~  284 (703)
T KOG2321|consen  206 DKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDD-GLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQ  284 (703)
T ss_pred             hhhhheeeecccccCCCccccccCcceEEEecCC-ceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCC
Confidence            54321111     1112     224889998765 55577778889999999999988765544  456888999776  


Q ss_pred             CcEEEEeCCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEE
Q 024372          199 GRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFD  256 (268)
Q Consensus       199 g~~l~~~~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd  256 (268)
                      +..+++.+...++|||-.+++.......-+....+|+.| ++-+|.+|-++..|..|=
T Consensus       285 q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p-~sGm~f~Ane~~~m~~yy  341 (703)
T KOG2321|consen  285 QNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVP-GSGMFFTANESSKMHTYY  341 (703)
T ss_pred             CceEEecchHHhhhcccccCCceeeccccCCcCceeeec-CCceEEEecCCCcceeEE
Confidence            566778888899999998887776665555667788887 577888888887776653

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.46  E-value=1e-12  Score=102.46  Aligned_cols=159  Identities=16%  Similarity=0.219  Sum_probs=115.5

Q ss_pred             cCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC----------eEEEeeCccCcEEEEEecCCCcEEEEeeCCCc
Q 024372           15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD----------WIGTFEGHKGAVWSCCLDANALFSASGSADFT   84 (268)
Q Consensus        15 h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~----------~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~   84 (268)
                      -.+.+.+..+...-..-.+|+.|-.+|.+.+||..++.          -......|+.+|.++.|.+.-..=++|+.+..
T Consensus       149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dk  228 (323)
T KOG0322|consen  149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDK  228 (323)
T ss_pred             ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccc
Confidence            44455555532211233467888999999999999983          33444679999999999876555578888888


Q ss_pred             EEEEeCCCC--Ce--eeeeccCC-eEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCc
Q 024372           85 AKLWDALTG--DE--KHSFEHKH-IVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQT  159 (268)
Q Consensus        85 v~iw~~~~~--~~--~~~~~~~~-~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  159 (268)
                      +.+|.+...  .+  ......++ .|..+..-||++++||+++|+-||+|..++...+ ....-|.+.+++++|+|+. .
T Consensus       229 l~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pL-AVLkyHsagvn~vAfspd~-~  306 (323)
T KOG0322|consen  229 LVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPL-AVLKYHSAGVNAVAFSPDC-E  306 (323)
T ss_pred             ceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCch-hhhhhhhcceeEEEeCCCC-c
Confidence            999987543  21  11112222 3667788999999999999999999998876543 3444567899999998874 4


Q ss_pred             EEEEeeCCCeEEEEeC
Q 024372          160 ILSSCTDSGGVRLWDA  175 (268)
Q Consensus       160 ~~~~~~~d~~i~iwd~  175 (268)
                      ++++++.|.+|.+|++
T Consensus       307 lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  307 LMAAASKDARISLWKL  322 (323)
T ss_pred             hhhhccCCceEEeeec
Confidence            6777789999999986

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.44  E-value=2.9e-10  Score=99.86  Aligned_cols=212  Identities=14%  Similarity=0.077  Sum_probs=134.3

Q ss_pred             eEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCC---CcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEE-
Q 024372           43 PMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD---FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL-  118 (268)
Q Consensus        43 i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D---~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~-  118 (268)
                      +.++|...++ ...+..+...+...+|+||++.++..+.+   ..|.+|++.++...........+....|+|+++.|+ 
T Consensus       181 l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~  259 (430)
T PRK00178        181 LQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAF  259 (430)
T ss_pred             EEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEE
Confidence            5556665443 44555677788999999999988776543   368889998877654433344455688999998776 


Q ss_pred             EeeCCC--eEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCC--eEEEEeCCCCceEEeecCCCCEEEEE
Q 024372          119 TGGFEK--ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG--GVRLWDARSGKIVQTLETKSPVTSAE  194 (268)
Q Consensus       119 s~~~d~--~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~v~~~~  194 (268)
                      +...++  .|.++|+.++.  ...+..+.+......|+|++..++.++..++  .|.++|+.+++..+............
T Consensus       260 ~~~~~g~~~Iy~~d~~~~~--~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~  337 (430)
T PRK00178        260 VLSKDGNPEIYVMDLASRQ--LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPR  337 (430)
T ss_pred             EEccCCCceEEEEECCCCC--eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceE
Confidence            444444  57788887543  2333333444556789998887766654333  57788888877543322222234568


Q ss_pred             ECCCCcEEEEe-C-CC--eEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCC---CeEEEEECCC
Q 024372          195 VSRDGRYITTA-D-GS--SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGED---MWVHVFDFHT  259 (268)
Q Consensus       195 ~s~~g~~l~~~-~-~~--~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d---~~i~~wd~~~  259 (268)
                      |+|+|+.++.. . ++  .|.++|+...+.. ............++| +|++++..+.+   ..++++++..
T Consensus       338 ~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~~~~~~~p~~sp-dg~~i~~~~~~~g~~~l~~~~~~g  407 (430)
T PRK00178        338 LSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTDTSLDESPSVAP-NGTMLIYATRQQGRGVLMLVSING  407 (430)
T ss_pred             ECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccCCCCCCCceECC-CCCEEEEEEecCCceEEEEEECCC
Confidence            99999987643 2 22  5888998775432 222221223456777 68877765532   3578888753

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.43  E-value=9.4e-11  Score=102.45  Aligned_cols=201  Identities=17%  Similarity=0.152  Sum_probs=130.8

Q ss_pred             cEEeeecCCCeeeEEEecCCCCCcEEEEEeCCC---CeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEE-EeeCCC-
Q 024372            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDS---SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSA-SGSADF-   83 (268)
Q Consensus         9 ~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~---~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~-s~s~D~-   83 (268)
                      +..+..+...+...+|+   |||++|+.++.++   .+.+|++.+++... +..+.+.+..++|+|+++.++ +.+.++ 
T Consensus       182 ~~~l~~~~~~~~~p~~S---pdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~  257 (417)
T TIGR02800       182 PQTITRSREPILSPAWS---PDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGN  257 (417)
T ss_pred             CEEeecCCCceecccCC---CCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCC
Confidence            44455667778888887   5999999887553   78899999886543 344556677789999998665 445444 


Q ss_pred             -cEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCC-C--eEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCc
Q 024372           84 -TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFE-K--ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQT  159 (268)
Q Consensus        84 -~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d-~--~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  159 (268)
                       .|++|++.++.......+........|+|+++.|+..+.. +  .|.++|+..++  ...............|+|++..
T Consensus       258 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~--~~~l~~~~~~~~~~~~spdg~~  335 (417)
T TIGR02800       258 PDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE--VRRLTFRGGYNASPSWSPDGDL  335 (417)
T ss_pred             ccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC--EEEeecCCCCccCeEECCCCCE
Confidence             5888898877654444444444567899999988765543 3  56777776433  2233333445667788998877


Q ss_pred             EEEEeeCCC--eEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEe-C-C--CeEEEEeCC
Q 024372          160 ILSSCTDSG--GVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-D-G--SSVKFWDAN  216 (268)
Q Consensus       160 ~~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~-~--~~v~~wd~~  216 (268)
                      ++.+..+.+  .|.+||+.++.... +..........|+|+|++|+.. . +  ..+.+.+..
T Consensus       336 i~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~  397 (417)
T TIGR02800       336 IAFVHREGGGFNIAVMDLDGGGERV-LTDTGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD  397 (417)
T ss_pred             EEEEEccCCceEEEEEeCCCCCeEE-ccCCCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence            666654422  78999998865433 3222233456899999887643 2 2  245555543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.43  E-value=5.9e-13  Score=112.82  Aligned_cols=94  Identities=20%  Similarity=0.350  Sum_probs=85.0

Q ss_pred             cCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCC
Q 024372           15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD   94 (268)
Q Consensus        15 h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~   94 (268)
                      -++.|+..+|+|   ||++||+.|.||.+||++..+.+++..++.--+...+|+|+||++++++|+.|-.|.||.+....
T Consensus       289 ~~g~in~f~FS~---DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erR  365 (636)
T KOG2394|consen  289 GEGSINEFAFSP---DGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERR  365 (636)
T ss_pred             ccccccceeEcC---CCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccce
Confidence            455899999985   99999999999999999999999998888888999999999999999999999999999998877


Q ss_pred             eeeee-ccCCeEEEEEEC
Q 024372           95 EKHSF-EHKHIVRACAFS  111 (268)
Q Consensus        95 ~~~~~-~~~~~v~~v~~~  111 (268)
                      .+... .|+..|..|+|.
T Consensus       366 VVARGqGHkSWVs~VaFD  383 (636)
T KOG2394|consen  366 VVARGQGHKSWVSVVAFD  383 (636)
T ss_pred             EEEeccccccceeeEeec
Confidence            76654 488888888887

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=2.6e-10  Score=100.12  Aligned_cols=202  Identities=16%  Similarity=0.099  Sum_probs=127.9

Q ss_pred             ecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCC---CeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEE-EeeCCC
Q 024372            8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDS---SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSA-SGSADF   83 (268)
Q Consensus         8 ~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~---~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~-s~s~D~   83 (268)
                      .+..+..|.+++....|+|   ||++|+..+.+.   .+.+|++.+++... +....+.+...+|+|+++.++ +.+.++
T Consensus       190 ~~~~l~~~~~~~~~p~wSp---DG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g  265 (430)
T PRK00178        190 RAVTLLQSREPILSPRWSP---DGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDG  265 (430)
T ss_pred             CceEEecCCCceeeeeECC---CCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCC
Confidence            3445556778888899985   999998776542   46778998886543 333344555688999998776 455555


Q ss_pred             --cEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeC-CC--eEEEEECCCCCCCCeEecCCcccEEEEEEeCCCC
Q 024372           84 --TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGF-EK--ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ  158 (268)
Q Consensus        84 --~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~-d~--~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~  158 (268)
                        .|++||+.++.......+........|+|+++.++..+. ++  .|.++|+.+++.  ..............|+|++.
T Consensus       266 ~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~--~~lt~~~~~~~~~~~Spdg~  343 (430)
T PRK00178        266 NPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA--ERVTFVGNYNARPRLSADGK  343 (430)
T ss_pred             CceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE--EEeecCCCCccceEECCCCC
Confidence              578889988765543334444556789999987766553 33  466667655432  22211112233467889888


Q ss_pred             cEEEEeeCCC--eEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEe-C-C--CeEEEEeCC
Q 024372          159 TILSSCTDSG--GVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-D-G--SSVKFWDAN  216 (268)
Q Consensus       159 ~~~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~-~--~~v~~wd~~  216 (268)
                      .++.+...++  .|.+||+.+++....... .......|+|||++++.+ . +  ..+.++++.
T Consensus       344 ~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~-~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~  406 (430)
T PRK00178        344 TLVMVHRQDGNFHVAAQDLQRGSVRILTDT-SLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN  406 (430)
T ss_pred             EEEEEEccCCceEEEEEECCCCCEEEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence            7766654433  588899988765332222 222356899999987643 2 2  346667764

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.41  E-value=3.8e-12  Score=106.80  Aligned_cols=243  Identities=17%  Similarity=0.240  Sum_probs=168.9

Q ss_pred             eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC-CC--eEEEeeCccCcEEEEEecCCCc-EEEEeeCCCcEEEE
Q 024372           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-GD--WIGTFEGHKGAVWSCCLDANAL-FSASGSADFTAKLW   88 (268)
Q Consensus        13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~-~~--~~~~~~~h~~~V~~~~~~~~~~-~l~s~s~D~~v~iw   88 (268)
                      .||...|-...|.|.+.+ +.+++++.||.+++=.+.. +.  -...+..|.++|..++..|+.. -|.|++.|+.++-.
T Consensus       182 SGH~~NvfQaKFiP~s~d-~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~  260 (559)
T KOG1334|consen  182 SGHCNNVFQAKFIPFSGD-RTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHI  260 (559)
T ss_pred             cccccchhhhhccCCCCC-cCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeee
Confidence            489999999999998865 5799999999999864433 32  2345667999999999998874 47899999999999


Q ss_pred             eCCCCCeeeeec----cCC---eEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCC------CeEe-----cCCcccEE
Q 024372           89 DALTGDEKHSFE----HKH---IVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAP------PREV-----GNSSGSIR  149 (268)
Q Consensus        89 ~~~~~~~~~~~~----~~~---~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~------~~~~-----~~~~~~v~  149 (268)
                      |+.+......+.    ++.   ....++.+| +...+++|+.|...++||.+.-...      .+..     ....-.|+
T Consensus       261 Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~IT  340 (559)
T KOG1334|consen  261 DLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNIT  340 (559)
T ss_pred             eeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccce
Confidence            988766544332    222   356788888 4558999999999999997642211      0111     11123589


Q ss_pred             EEEEeCCCCcEEEEeeCCCeEEEEeCCC--C----------ceEEe-ecCC---CCEEEEE-ECCCCcEEEEeCC-CeEE
Q 024372          150 TVAWLHSDQTILSSCTDSGGVRLWDARS--G----------KIVQT-LETK---SPVTSAE-VSRDGRYITTADG-SSVK  211 (268)
Q Consensus       150 ~~~~~~~~~~~~~~~~~d~~i~iwd~~~--~----------~~~~~-~~~~---~~v~~~~-~s~~g~~l~~~~~-~~v~  211 (268)
                      +++|++++.-++++-.+ -.|.++.-..  |          ..++. +++|   ..|..+- |-|...|+++|+| |.|-
T Consensus       341 gl~Ysh~~sElLaSYnD-e~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIF  419 (559)
T KOG1334|consen  341 GLVYSHDGSELLASYND-EDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIF  419 (559)
T ss_pred             eEEecCCccceeeeecc-cceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEE
Confidence            99999888877776554 6788884432  2          12222 3433   2355555 4678889988766 9999


Q ss_pred             EEeCCCceeeeEEeCCCCceeeEEc-CCCCCEEEeccCCCeEEEEECC
Q 024372          212 FWDANHFGLVKGYNMPCNTESASLE-PKLGNIFIAGGEDMWVHVFDFH  258 (268)
Q Consensus       212 ~wd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~gs~d~~i~~wd~~  258 (268)
                      |||....+++.-......+. -|+. .+---.|++.|-|.-|++|--.
T Consensus       420 iW~K~t~eii~~MegDr~VV-NCLEpHP~~PvLAsSGid~DVKIWTP~  466 (559)
T KOG1334|consen  420 IWDKKTGEIIRFMEGDRHVV-NCLEPHPHLPVLASSGIDHDVKIWTPL  466 (559)
T ss_pred             EEecchhHHHHHhhcccceE-eccCCCCCCchhhccCCccceeeecCC
Confidence            99998887776555443322 2222 2235578999999999999753

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.40  E-value=6.7e-10  Score=97.12  Aligned_cols=219  Identities=14%  Similarity=0.035  Sum_probs=127.1

Q ss_pred             cCCCeeeEEEecCCCCCcEE---EEEeCCCCeEEe--eCCCCCeEEEeeCccCcEEEEEecCCCcEEEEee-C----CCc
Q 024372           15 HSRPVVDLFYSPITPDGFFL---VSASKDSSPMLR--NGETGDWIGTFEGHKGAVWSCCLDANALFSASGS-A----DFT   84 (268)
Q Consensus        15 h~~~v~~~~f~~~~~dg~~l---~s~s~d~~i~iw--~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s-~----D~~   84 (268)
                      ..+.+..=.|+   |||+.+   ...-.++.-.||  ++..|+.. .+....+.....+|+|||+.|+..+ .    |..
T Consensus       183 ~~~~~~sP~wS---PDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~  258 (428)
T PRK01029        183 EHSLSITPTWM---HIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-KILALQGNQLMPTFSPRKKLLAFISDRYGNPDLF  258 (428)
T ss_pred             CCCCcccceEc---cCCCceEEEEEEccCCCceEEEEECCCCCce-EeecCCCCccceEECCCCCEEEEEECCCCCccee
Confidence            34455556777   588642   345555554554  77766533 2222344455678999998877544 2    223


Q ss_pred             EEEEeCCCC---CeeeeeccC-CeEEEEEECCCCCEEEEee-CCCeEEEEE--CCCCCCCCeEecCCcccEEEEEEeCCC
Q 024372           85 AKLWDALTG---DEKHSFEHK-HIVRACAFSEDTHLLLTGG-FEKILRIFD--LNRPDAPPREVGNSSGSIRTVAWLHSD  157 (268)
Q Consensus        85 v~iw~~~~~---~~~~~~~~~-~~v~~v~~~~~~~~l~s~~-~d~~i~~~d--~~~~~~~~~~~~~~~~~v~~~~~~~~~  157 (268)
                      +.+|++..+   ......... ......+|+|||+.|+..+ .++...+|.  +..............+.+....|+|++
T Consensus       259 ~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG  338 (428)
T PRK01029        259 IQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDG  338 (428)
T ss_pred             EEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCC
Confidence            444776542   222222222 2335678999999777655 456555564  332111223333333456678899999


Q ss_pred             CcEEEEeeCC--CeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEE-eC---CCeEEEEeCCCceeeeEEeCCCCce
Q 024372          158 QTILSSCTDS--GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-AD---GSSVKFWDANHFGLVKGYNMPCNTE  231 (268)
Q Consensus       158 ~~~~~~~~~d--~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~---~~~v~~wd~~~~~~~~~~~~~~~~~  231 (268)
                      ..++.+...+  ..|.+||+.+++..........+....|+|||+.|+. +.   ...|.++|+...+............
T Consensus       339 ~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~  418 (428)
T PRK01029        339 KKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEKR  418 (428)
T ss_pred             CEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCccc
Confidence            8776665443  3699999998876554433335677899999987753 32   3568888987665443333222233


Q ss_pred             eeEEcC
Q 024372          232 SASLEP  237 (268)
Q Consensus       232 ~~~~~~  237 (268)
                      ...|+|
T Consensus       419 ~p~Ws~  424 (428)
T PRK01029        419 FPSWGA  424 (428)
T ss_pred             CceecC
Confidence            444444

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.39  E-value=7.4e-09  Score=88.24  Aligned_cols=243  Identities=16%  Similarity=0.192  Sum_probs=155.2

Q ss_pred             eeeEEEecCCCCCcEEEEEeCC----CCeEEeeCCC--CCe--EEEeeCccCcEEEEEecCCCcEEEEee-CCCcEEEEe
Q 024372           19 VVDLFYSPITPDGFFLVSASKD----SSPMLRNGET--GDW--IGTFEGHKGAVWSCCLDANALFSASGS-ADFTAKLWD   89 (268)
Q Consensus        19 v~~~~f~~~~~dg~~l~s~s~d----~~i~iw~~~~--~~~--~~~~~~h~~~V~~~~~~~~~~~l~s~s-~D~~v~iw~   89 (268)
                      ..-++++   |++++|.++...    +.|..|.+..  +++  +.+.......-.-++++|++++++.+. .++++.+++
T Consensus        39 Ps~l~~~---~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~  115 (345)
T PF10282_consen   39 PSWLAVS---PDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP  115 (345)
T ss_dssp             ECCEEE----TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CceEEEE---eCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence            3456676   488899988774    5777776554  443  333332223445688999999988777 589999999


Q ss_pred             CCCCC-eee---eecc-----------CCeEEEEEECCCCCEEEEee-CCCeEEEEECCCCCCCCeE----ecCCcccEE
Q 024372           90 ALTGD-EKH---SFEH-----------KHIVRACAFSEDTHLLLTGG-FEKILRIFDLNRPDAPPRE----VGNSSGSIR  149 (268)
Q Consensus        90 ~~~~~-~~~---~~~~-----------~~~v~~v~~~~~~~~l~s~~-~d~~i~~~d~~~~~~~~~~----~~~~~~~v~  149 (268)
                      +.... ...   .+.+           .....++.++|+++.+++.. ....|.+|++.........    .......-.
T Consensus       116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR  195 (345)
T PF10282_consen  116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR  195 (345)
T ss_dssp             ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE
T ss_pred             ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCc
Confidence            97643 211   1211           12467889999999887753 3457899998654422211    122334567


Q ss_pred             EEEEeCCCCcEEEEeeCCCeEEEEeCC--CCc--eEEeecC-------CCCEEEEEECCCCcEEEEe--CCCeEEEEeCC
Q 024372          150 TVAWLHSDQTILSSCTDSGGVRLWDAR--SGK--IVQTLET-------KSPVTSAEVSRDGRYITTA--DGSSVKFWDAN  216 (268)
Q Consensus       150 ~~~~~~~~~~~~~~~~~d~~i~iwd~~--~~~--~~~~~~~-------~~~v~~~~~s~~g~~l~~~--~~~~v~~wd~~  216 (268)
                      .+.|+|++..+++.+-.+++|.++++.  +++  .++.+..       ......+.++|||++|..+  ..+.|.+|++.
T Consensus       196 h~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d  275 (345)
T PF10282_consen  196 HLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD  275 (345)
T ss_dssp             EEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred             EEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence            889999988888888888999999987  443  2333321       1247889999999998665  35789999983


Q ss_pred             C--c--eeeeEEeC-CCCceeeEEcCCCCCEEEecc-CCCeEEEEEC--CCCcEEee
Q 024372          217 H--F--GLVKGYNM-PCNTESASLEPKLGNIFIAGG-EDMWVHVFDF--HTGEQIAI  265 (268)
Q Consensus       217 ~--~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~gs-~d~~i~~wd~--~~g~~~~~  265 (268)
                      .  +  +.+..+.. ...+..+.+++ +|++|+++. .++.|.+|++  ++|.+..+
T Consensus       276 ~~~g~l~~~~~~~~~G~~Pr~~~~s~-~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~  331 (345)
T PF10282_consen  276 PATGTLTLVQTVPTGGKFPRHFAFSP-DGRYLYVANQDSNTVSVFDIDPDTGKLTPV  331 (345)
T ss_dssp             TTTTTEEEEEEEEESSSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred             cCCCceEEEEEEeCCCCCccEEEEeC-CCCEEEEEecCCCeEEEEEEeCCCCcEEEe
Confidence            2  2  33444443 33467777777 688777665 5668999876  57776544

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.39  E-value=3.3e-10  Score=99.71  Aligned_cols=199  Identities=13%  Similarity=0.046  Sum_probs=122.1

Q ss_pred             EeeecCCCeeeEEEecCCCCCcEEEEEeCC-C--CeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEE-EeeCCCc--
Q 024372           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKD-S--SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSA-SGSADFT--   84 (268)
Q Consensus        11 ~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d-~--~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~-s~s~D~~--   84 (268)
                      .+..+.+++....|+|   ||++|+..+.+ +  .|.+||+.+++... +..-.+.....+|+||++.++ +.+.++.  
T Consensus       212 ~l~~~~~~~~~p~wSP---DG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~  287 (448)
T PRK04792        212 MLLRSPEPLMSPAWSP---DGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPE  287 (448)
T ss_pred             EeecCCCcccCceECC---CCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeE
Confidence            3344566777888985   99988877543 3  46677888876432 222223344678999998775 4566665  


Q ss_pred             EEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeC-CC--eEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEE
Q 024372           85 AKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGF-EK--ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTIL  161 (268)
Q Consensus        85 v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~-d~--~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  161 (268)
                      |+++|+.+++......+........|+||++.++..+. ++  .|.++|+.+++.  ..............|+|++..++
T Consensus       288 Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~--~~Lt~~g~~~~~~~~SpDG~~l~  365 (448)
T PRK04792        288 IYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV--SRLTFEGEQNLGGSITPDGRSMI  365 (448)
T ss_pred             EEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE--EEEecCCCCCcCeeECCCCCEEE
Confidence            77778887765544444445567889999998776543 33  455567654432  22221222233468899988776


Q ss_pred             EEeeCCC--eEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEE-e-CCC--eEEEEeCC
Q 024372          162 SSCTDSG--GVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-A-DGS--SVKFWDAN  216 (268)
Q Consensus       162 ~~~~~d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~-~~~--~v~~wd~~  216 (268)
                      .+...++  .|.++|+.+++....... .......|+|||++++. . .++  .+.+++..
T Consensus       366 ~~~~~~g~~~I~~~dl~~g~~~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~  425 (448)
T PRK04792        366 MVNRTNGKFNIARQDLETGAMQVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID  425 (448)
T ss_pred             EEEecCCceEEEEEECCCCCeEEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence            6655445  455678888765332222 12224579999998754 2 232  36677763

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.38  E-value=1.3e-11  Score=99.26  Aligned_cols=191  Identities=15%  Similarity=0.191  Sum_probs=134.6

Q ss_pred             EEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEE-eeCCCeEEEEECCCCCCCCeEecCC
Q 024372           66 SCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLT-GGFEKILRIFDLNRPDAPPREVGNS  144 (268)
Q Consensus        66 ~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s-~~~d~~i~~~d~~~~~~~~~~~~~~  144 (268)
                      -++|+|+|+++|++++- .+.|-|.++-+..+.+..-+.|..+.|..+...++. ...++.+.+|++..++...... ..
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckId-eg   90 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKID-EG   90 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEec-cC
Confidence            47899999999998865 777888888777666655556677788887765554 5677899999997665433333 34


Q ss_pred             cccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEeCCC----------------
Q 024372          145 SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGS----------------  208 (268)
Q Consensus       145 ~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~----------------  208 (268)
                      ..++..++|+|++.+++.++.-+-.|.+|.+-+.++...--.+..+..++|+|||+|.+..+-+                
T Consensus        91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~l  170 (447)
T KOG4497|consen   91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWIL  170 (447)
T ss_pred             CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHH
Confidence            5678899999999999988888889999999887776543344557889999999987653211                


Q ss_pred             ---------------------eEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEECCC
Q 024372          209 ---------------------SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHT  259 (268)
Q Consensus       209 ---------------------~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~  259 (268)
                                           .+-+||.--.-.+..|.-.-+.....++| .+++++.|+.|+.+|+-|--+
T Consensus       171 l~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP-~~qflavGsyD~~lrvlnh~t  241 (447)
T KOG4497|consen  171 LKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSP-CNQFLAVGSYDQMLRVLNHFT  241 (447)
T ss_pred             HHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEecc-ccceEEeeccchhhhhhceee
Confidence                                 23344421100111233333455666776 699999999999998866433

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.38  E-value=3.2e-11  Score=96.49  Aligned_cols=168  Identities=17%  Similarity=0.155  Sum_probs=127.8

Q ss_pred             ecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeC-CCCCeEEE--eeCccCcEEEEEecCCCcEEEEeeCCCc
Q 024372            8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNG-ETGDWIGT--FEGHKGAVWSCCLDANALFSASGSADFT   84 (268)
Q Consensus         8 ~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~-~~~~~~~~--~~~h~~~V~~~~~~~~~~~l~s~s~D~~   84 (268)
                      ..-.+..|...|++++|+|   ..+.|++++.|....+|.. ..+++..+  |.-|...+.++.|+|++..+|.||.-+.
T Consensus        47 ~~htls~Hd~~vtgvdWap---~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~  123 (361)
T KOG1523|consen   47 PAHTLSEHDKIVTGVDWAP---KSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARL  123 (361)
T ss_pred             eceehhhhCcceeEEeecC---CCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccE
Confidence            3445667999999999997   4558999999999999988 66655433  3457889999999999999999999999


Q ss_pred             EEEEeCCCCCe-----eeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEEC-----CCCC------------CCCeEec
Q 024372           85 AKLWDALTGDE-----KHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDL-----NRPD------------APPREVG  142 (268)
Q Consensus        85 v~iw~~~~~~~-----~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~-----~~~~------------~~~~~~~  142 (268)
                      |-||-++..+-     ....++...|.++.|+|++-+|++|+.|+..|+|..     ++..            .+..+..
T Consensus       124 isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~  203 (361)
T KOG1523|consen  124 ISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS  203 (361)
T ss_pred             EEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc
Confidence            99998765432     112245678999999999999999999999999963     1110            0111222


Q ss_pred             CCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCc
Q 024372          143 NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK  179 (268)
Q Consensus       143 ~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~  179 (268)
                      ...+.+..+.|+|++..+.-.+.+ ..+.+=|....+
T Consensus       204 ~~ggwvh~v~fs~sG~~lawv~Hd-s~v~~~da~~p~  239 (361)
T KOG1523|consen  204 SSGGWVHGVLFSPSGNRLAWVGHD-STVSFVDAAGPS  239 (361)
T ss_pred             cCCCceeeeEeCCCCCEeeEecCC-CceEEeecCCCc
Confidence            345789999999988777666654 889998876554

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.38  E-value=7.8e-12  Score=113.27  Aligned_cols=145  Identities=20%  Similarity=0.302  Sum_probs=117.8

Q ss_pred             CCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeee--eeccCCeE
Q 024372           28 TPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKH--SFEHKHIV  105 (268)
Q Consensus        28 ~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~--~~~~~~~v  105 (268)
                      +++-.++++|+.-+.+.+|.....+.-..+.||++.++.+.++.+|.+++|.|.|.++|+|++.+.+...  -+.|+..+
T Consensus       142 s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRv  221 (967)
T KOG0974|consen  142 SAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARV  221 (967)
T ss_pred             cCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccccccee
Confidence            3567899999999999999887433223588999999999999999999999999999999999887654  56799999


Q ss_pred             EEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCC
Q 024372          106 RACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR  176 (268)
Q Consensus       106 ~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~  176 (268)
                      ..++|.|+  .++|++-|-+.++|+.+.... .....+....+..++. +.+..+..++.+|+.+++||+-
T Consensus       222 w~~~~~~n--~i~t~gedctcrvW~~~~~~l-~~y~~h~g~~iw~~~~-~~~~~~~vT~g~Ds~lk~~~l~  288 (967)
T KOG0974|consen  222 WACCFLPN--RIITVGEDCTCRVWGVNGTQL-EVYDEHSGKGIWKIAV-PIGVIIKVTGGNDSTLKLWDLN  288 (967)
T ss_pred             EEEEeccc--eeEEeccceEEEEEeccccee-hhhhhhhhcceeEEEE-cCCceEEEeeccCcchhhhhhh
Confidence            99999998  899999999999998664332 2333344556778776 4566677788889999999874

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.38  E-value=1.4e-09  Score=87.26  Aligned_cols=229  Identities=13%  Similarity=0.205  Sum_probs=145.4

Q ss_pred             eeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEE-EeeCC------CcEEEEeCC
Q 024372           19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSA-SGSAD------FTAKLWDAL   91 (268)
Q Consensus        19 v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~-s~s~D------~~v~iw~~~   91 (268)
                      ...++|+.   |-.-++.|. |.-.+||+.+--+....-.-+.+.+.-+.+=-...++| .||..      ..|.|||=.
T Consensus         8 ~lsvs~NQ---D~ScFava~-~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~   83 (346)
T KOG2111|consen    8 TLSVSFNQ---DHSCFAVAT-DTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDL   83 (346)
T ss_pred             eeEEEEcc---CCceEEEEe-cCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecc
Confidence            34588874   444455454 44568887765332211121222211111111223333 34333      479999977


Q ss_pred             CCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEe---cCCcccEEEEEEeCCCCcEEEE--eeC
Q 024372           92 TGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV---GNSSGSIRTVAWLHSDQTILSS--CTD  166 (268)
Q Consensus        92 ~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~--~~~  166 (268)
                      ...++.++....+|..|.+.++.  ++.. ..+.|.+|.....-.....+   .+.+| ..++  .|.....+++  |..
T Consensus        84 k~~~i~el~f~~~I~~V~l~r~r--iVvv-l~~~I~VytF~~n~k~l~~~et~~NPkG-lC~~--~~~~~k~~LafPg~k  157 (346)
T KOG2111|consen   84 KERCIIELSFNSEIKAVKLRRDR--IVVV-LENKIYVYTFPDNPKLLHVIETRSNPKG-LCSL--CPTSNKSLLAFPGFK  157 (346)
T ss_pred             cCcEEEEEEeccceeeEEEcCCe--EEEE-ecCeEEEEEcCCChhheeeeecccCCCc-eEee--cCCCCceEEEcCCCc
Confidence            77888888899999999998774  4333 35789999876322222222   22333 2222  3433333333  344


Q ss_pred             CCeEEEEeCCCCce--EEeec-CCCCEEEEEECCCCcEEEEe-CCCe-EEEEeCCCceeeeEEeC---CCCceeeEEcCC
Q 024372          167 SGGVRLWDARSGKI--VQTLE-TKSPVTSAEVSRDGRYITTA-DGSS-VKFWDANHFGLVKGYNM---PCNTESASLEPK  238 (268)
Q Consensus       167 d~~i~iwd~~~~~~--~~~~~-~~~~v~~~~~s~~g~~l~~~-~~~~-v~~wd~~~~~~~~~~~~---~~~~~~~~~~~~  238 (268)
                      -|.|+|-|+...+.  -..++ |...+.|++++-+|.+++++ ..|+ |||||.++++++..+..   +.....++++| 
T Consensus       158 ~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp-  236 (346)
T KOG2111|consen  158 TGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSP-  236 (346)
T ss_pred             cceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCC-
Confidence            47999999987655  23344 56789999999999999875 4454 79999999999888764   33466777777 


Q ss_pred             CCCEEEeccCCCeEEEEECC
Q 024372          239 LGNIFIAGGEDMWVHVFDFH  258 (268)
Q Consensus       239 ~~~~~~~gs~d~~i~~wd~~  258 (268)
                      +..+|+++|.-++++++.++
T Consensus       237 ~~s~LavsSdKgTlHiF~l~  256 (346)
T KOG2111|consen  237 NSSWLAVSSDKGTLHIFSLR  256 (346)
T ss_pred             CccEEEEEcCCCeEEEEEee
Confidence            69999999999999999875

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.37  E-value=1.5e-09  Score=95.53  Aligned_cols=217  Identities=14%  Similarity=0.080  Sum_probs=129.8

Q ss_pred             CeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeC-CC--cEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEE
Q 024372           42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSA-DF--TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL  118 (268)
Q Consensus        42 ~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~-D~--~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~  118 (268)
                      .+.++|..... .+.+-.+...+....|+||++.++..+. ++  .|++||+.+++.......+.......|+||++.|+
T Consensus       199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La  277 (448)
T PRK04792        199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLA  277 (448)
T ss_pred             EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEE
Confidence            44455654332 3345456778888999999998876553 33  58888998776543322233344678999999776


Q ss_pred             E-eeCCCe--EEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCC--eEEEEeCCCCceEEeecCCCCEEEE
Q 024372          119 T-GGFEKI--LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG--GVRLWDARSGKIVQTLETKSPVTSA  193 (268)
Q Consensus       119 s-~~~d~~--i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~v~~~  193 (268)
                      . .+.++.  |.++|+.++.  ......+........|+|++..++.++..++  .|.++|+.+++..............
T Consensus       278 ~~~~~~g~~~Iy~~dl~tg~--~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~  355 (448)
T PRK04792        278 LVLSKDGQPEIYVVDIATKA--LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGG  355 (448)
T ss_pred             EEEeCCCCeEEEEEECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCe
Confidence            4 455554  6667876543  2333333344566789999888776654434  5777788877754432222223456


Q ss_pred             EECCCCcEEEEe-C-CC--eEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEecc-CCC--eEEEEECCCCcEEe
Q 024372          194 EVSRDGRYITTA-D-GS--SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGG-EDM--WVHVFDFHTGEQIA  264 (268)
Q Consensus       194 ~~s~~g~~l~~~-~-~~--~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs-~d~--~i~~wd~~~g~~~~  264 (268)
                      .|+|||++++.. . ++  .|.++|+...... ............++| +|++++..+ .++  .+++++. +|+...
T Consensus       356 ~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~~~d~~ps~sp-dG~~I~~~~~~~g~~~l~~~~~-~G~~~~  430 (448)
T PRK04792        356 SITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTSTRLDESPSVAP-NGTMVIYSTTYQGKQVLAAVSI-DGRFKA  430 (448)
T ss_pred             eECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCCCCCCCceECC-CCCEEEEEEecCCceEEEEEEC-CCCceE
Confidence            899999887643 2 33  4556787665432 222111222346777 577666544 333  4788887 454433

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.37  E-value=3.2e-09  Score=101.92  Aligned_cols=237  Identities=11%  Similarity=0.128  Sum_probs=153.6

Q ss_pred             eeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeC-cc-------------CcEEEEEecCCCcEE-EEeeCCCc
Q 024372           20 VDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG-HK-------------GAVWSCCLDANALFS-ASGSADFT   84 (268)
Q Consensus        20 ~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~-h~-------------~~V~~~~~~~~~~~l-~s~s~D~~   84 (268)
                      ..+++++  .+|.+.++-+.++.|+++|.. |+.+..+.+ ..             ..-..+++.+++..+ ++-...+.
T Consensus       571 ~gvavd~--~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~  647 (1057)
T PLN02919        571 GKLAIDL--LNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHA  647 (1057)
T ss_pred             ceEEEEC--CCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCce
Confidence            3567764  256777888888899999974 555544432 11             124678888877644 44455688


Q ss_pred             EEEEeCCCCCeeeeecc-----------------CCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCCCeEec----
Q 024372           85 AKLWDALTGDEKHSFEH-----------------KHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVG----  142 (268)
Q Consensus        85 v~iw~~~~~~~~~~~~~-----------------~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~----  142 (268)
                      |+++|..++........                 -..-..++++| ++.++++...++.|++||...+..  ..+.    
T Consensus       648 Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v--~~~~G~G~  725 (1057)
T PLN02919        648 LREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT--RVFSGDGY  725 (1057)
T ss_pred             EEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeE--EEEecCCc
Confidence            99999876553221110                 01124688999 666777777889999999765321  1110    


Q ss_pred             -----C------CcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEee-------------cC---------CCC
Q 024372          143 -----N------SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL-------------ET---------KSP  189 (268)
Q Consensus       143 -----~------~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~-------------~~---------~~~  189 (268)
                           .      .-.....++++|++..++++...++.|++||+.++......             ..         -..
T Consensus       726 ~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~  805 (1057)
T PLN02919        726 ERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQH  805 (1057)
T ss_pred             cccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccC
Confidence                 0      01123468888988878778778899999999876532111             00         012


Q ss_pred             EEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCC--------------CCceeeEEcCCCCCEEEeccCCCeEEE
Q 024372          190 VTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMP--------------CNTESASLEPKLGNIFIAGGEDMWVHV  254 (268)
Q Consensus       190 v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~gs~d~~i~~  254 (268)
                      ...++++++|+++++ ..++.|++||..+..........              ..+..+++.+ +|+++++-+.+..|++
T Consensus       806 P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irv  884 (1057)
T PLN02919        806 PLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRY  884 (1057)
T ss_pred             CceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEE
Confidence            458899999987665 46789999999776443222110              1234456666 6899999899999999


Q ss_pred             EECCCCcE
Q 024372          255 FDFHTGEQ  262 (268)
Q Consensus       255 wd~~~g~~  262 (268)
                      ||+.+++.
T Consensus       885 id~~~~~~  892 (1057)
T PLN02919        885 LDLNKGEA  892 (1057)
T ss_pred             EECCCCcc
Confidence            99988865

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.35  E-value=1.4e-08  Score=85.50  Aligned_cols=233  Identities=15%  Similarity=0.119  Sum_probs=147.0

Q ss_pred             CCCcEEEEEeC----------CCCeEEeeCCCCCeEEEeeCccC-------cEEEEEecCCCcEEEEee-C-CCcEEEEe
Q 024372           29 PDGFFLVSASK----------DSSPMLRNGETGDWIGTFEGHKG-------AVWSCCLDANALFSASGS-A-DFTAKLWD   89 (268)
Q Consensus        29 ~dg~~l~s~s~----------d~~i~iw~~~~~~~~~~~~~h~~-------~V~~~~~~~~~~~l~s~s-~-D~~v~iw~   89 (268)
                      |||+.|..+..          +..|.+||..+++.++++.--..       .-...+++|||++++... . +..|-+.|
T Consensus        55 pDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD  134 (352)
T TIGR02658        55 SDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVD  134 (352)
T ss_pred             CCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEE
Confidence            58888877765          78899999999999988864211       223678899999887555 3 78999999


Q ss_pred             CCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCC----eEecCCcccEEEE-EEeC-CCCcEEEE
Q 024372           90 ALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP----REVGNSSGSIRTV-AWLH-SDQTILSS  163 (268)
Q Consensus        90 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~----~~~~~~~~~v~~~-~~~~-~~~~~~~~  163 (268)
                      +.+++.+..+..+........+.+...+.  +.|+......+.......    ..+.....++..- .+.+ ++..++++
T Consensus       135 ~~~~kvv~ei~vp~~~~vy~t~e~~~~~~--~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs  212 (352)
T TIGR02658       135 LEGKAFVRMMDVPDCYHIFPTANDTFFMH--CRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPT  212 (352)
T ss_pred             CCCCcEEEEEeCCCCcEEEEecCCccEEE--eecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEe
Confidence            99999988887655443333333332221  233333332222111100    0000000011000 2345 45445544


Q ss_pred             eeCCCeEEEEeCCCC-----ceEEeecC--------CCCEEEEEECCCCcEEEE-eC----------CCeEEEEeCCCce
Q 024372          164 CTDSGGVRLWDARSG-----KIVQTLET--------KSPVTSAEVSRDGRYITT-AD----------GSSVKFWDANHFG  219 (268)
Q Consensus       164 ~~~d~~i~iwd~~~~-----~~~~~~~~--------~~~v~~~~~s~~g~~l~~-~~----------~~~v~~wd~~~~~  219 (268)
                       .. |+|.+-|+...     +.+..+..        ...+.-++++|+++.+.. ..          ++.|.++|..+.+
T Consensus       213 -~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k  290 (352)
T TIGR02658       213 -YT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK  290 (352)
T ss_pred             -cC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe
Confidence             44 99999996433     33333321        123455999999876543 21          2589999999999


Q ss_pred             eeeEEeCCCCceeeEEcCCCCC-EEEec-cCCCeEEEEECCCCcEEeec
Q 024372          220 LVKGYNMPCNTESASLEPKLGN-IFIAG-GEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~-~~~~g-s~d~~i~~wd~~~g~~~~~~  266 (268)
                      .+..+........+.++++ ++ +|++. ..++.|.++|+.+++.+...
T Consensus       291 vi~~i~vG~~~~~iavS~D-gkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       291 RLRKIELGHEIDSINVSQD-AKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             EEEEEeCCCceeeEEECCC-CCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            9998888778888888884 66 66644 46788999999999888754

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.35  E-value=1.9e-10  Score=93.64  Aligned_cols=188  Identities=12%  Similarity=0.191  Sum_probs=130.0

Q ss_pred             CcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeec--cCCeEEEEEECCC-CCEEEEeeCCCeEEEEECCCCCCC-
Q 024372           62 GAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE--HKHIVRACAFSED-THLLLTGGFEKILRIFDLNRPDAP-  137 (268)
Q Consensus        62 ~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~--~~~~v~~v~~~~~-~~~l~s~~~d~~i~~~d~~~~~~~-  137 (268)
                      -.++.++|++.-.-+|.+..|-+||+++-.. .+...+.  .+..|.+++|-|. .+.|+.|+..| |-+|........ 
T Consensus        99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~  176 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNAN  176 (445)
T ss_pred             cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccc
Confidence            3467788988666678889999999998766 4444444  3457999999994 45777777654 678965321100 


Q ss_pred             ------------CeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEee-cCCCCEEEEEECCCCcEEEE
Q 024372          138 ------------PREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL-ETKSPVTSAEVSRDGRYITT  204 (268)
Q Consensus       138 ------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~  204 (268)
                                  .....+| .+|++++|.+++..++.++.+|..|.|||+.++..+... ..-+.+.-+.|||||.++.+
T Consensus       177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfa  255 (445)
T KOG2139|consen  177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFA  255 (445)
T ss_pred             cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEE
Confidence                        0111123 589999999998888888888899999999999877655 34466888999999998776


Q ss_pred             e-CCCeEEEEeC-CCceeeeEEeCCCCceeeEEcCCCCCEE-EeccCCCeEE
Q 024372          205 A-DGSSVKFWDA-NHFGLVKGYNMPCNTESASLEPKLGNIF-IAGGEDMWVH  253 (268)
Q Consensus       205 ~-~~~~v~~wd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~gs~d~~i~  253 (268)
                      + -|+..++|.. +.+...+-.-.+..+...+++|. |++| ++.+..-.+|
T Consensus       256 At~davfrlw~e~q~wt~erw~lgsgrvqtacWspc-GsfLLf~~sgsp~ly  306 (445)
T KOG2139|consen  256 ATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPC-GSFLLFACSGSPRLY  306 (445)
T ss_pred             ecccceeeeehhcccceecceeccCCceeeeeecCC-CCEEEEEEcCCceEE
Confidence            5 5889999964 33333332333445667788885 6654 4555554444

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.34  E-value=1.9e-09  Score=85.58  Aligned_cols=244  Identities=14%  Similarity=0.114  Sum_probs=151.9

Q ss_pred             CeeeEEEecCCCCCc-EEEEEeCCCCeEEeeCCCCCeEEEeeCc---cCc---EEEEEecCCCcEEEEeeCCCcEEEEeC
Q 024372           18 PVVDLFYSPITPDGF-FLVSASKDSSPMLRNGETGDWIGTFEGH---KGA---VWSCCLDANALFSASGSADFTAKLWDA   90 (268)
Q Consensus        18 ~v~~~~f~~~~~dg~-~l~s~s~d~~i~iw~~~~~~~~~~~~~h---~~~---V~~~~~~~~~~~l~s~s~D~~v~iw~~   90 (268)
                      .+..+.|.-.-.+|. .|+-+-.+|.|+++....-+-...|++=   +-.   -.++.|++.+..++++-.+|.+-+-+.
T Consensus        71 ~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~  150 (339)
T KOG0280|consen   71 TEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYE  150 (339)
T ss_pred             ccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEec
Confidence            455666654434555 6777888999999866554444444432   112   235567777777777777777774443


Q ss_pred             CCCCeee--ee-ccCCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCC-CeEecCCcccEEEEEEeCCCCcEEEEee
Q 024372           91 LTGDEKH--SF-EHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAP-PREVGNSSGSIRTVAWLHSDQTILSSCT  165 (268)
Q Consensus        91 ~~~~~~~--~~-~~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~  165 (268)
                      .......  .+ .|.-+...+.|+. +.+++++|+.|+.+..||++.+..- .+...-|...|.+|.-+|+.+..+++|+
T Consensus       151 t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGs  230 (339)
T KOG0280|consen  151 TEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGS  230 (339)
T ss_pred             ceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEec
Confidence            3322222  33 3777788888876 5679999999999999999844321 1112235667888888888889999999


Q ss_pred             CCCeEEEEeCC-CCceEEeecCCCCEEEEEECCCC--cEEEEeCCCeEEEEeCCCc--e---eeeEEeCCC-CceeeEEc
Q 024372          166 DSGGVRLWDAR-SGKIVQTLETKSPVTSAEVSRDG--RYITTADGSSVKFWDANHF--G---LVKGYNMPC-NTESASLE  236 (268)
Q Consensus       166 ~d~~i~iwd~~-~~~~~~~~~~~~~v~~~~~s~~g--~~l~~~~~~~v~~wd~~~~--~---~~~~~~~~~-~~~~~~~~  236 (268)
                      .|-.|++||+| -++++..-...+.|-.+..+|.-  +++++.=-+..++-+....  +   .+..++.+. ......+.
T Consensus       231 YDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd  310 (339)
T KOG0280|consen  231 YDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWD  310 (339)
T ss_pred             cccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccc
Confidence            99999999999 57777665556778899998853  2333221112222232211  1   122233322 22333343


Q ss_pred             CCCCCEEEecc-CCCeEE-EEECCCCcE
Q 024372          237 PKLGNIFIAGG-EDMWVH-VFDFHTGEQ  262 (268)
Q Consensus       237 ~~~~~~~~~gs-~d~~i~-~wd~~~g~~  262 (268)
                      . -...|+|++ .|+.|+ +|-.-+|+.
T Consensus       311 ~-~~~~lATCsFYDk~~~~~Wl~~t~~~  337 (339)
T KOG0280|consen  311 S-KDSFLATCSFYDKKIRQLWLHITGEP  337 (339)
T ss_pred             c-ccceeeeeeccccceeeeeeeccCCc
Confidence            3 245688875 688866 897766653

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.33  E-value=2.5e-09  Score=93.50  Aligned_cols=222  Identities=13%  Similarity=0.034  Sum_probs=128.1

Q ss_pred             CeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcE--E-EEeeCCC--cEEEEeCCCCCeeeeeccCCeEEEEEECCCCCE
Q 024372           42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALF--S-ASGSADF--TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHL  116 (268)
Q Consensus        42 ~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~--l-~s~s~D~--~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~  116 (268)
                      .+.+.|...+. ...+......+.+-+|+|||+.  + ...-.++  .|.+.++.++........+.......|+|||+.
T Consensus       166 ~l~~~d~dG~~-~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~  244 (428)
T PRK01029        166 ELWSVDYDGQN-LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKL  244 (428)
T ss_pred             eEEEEcCCCCC-ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCE
Confidence            34444544333 3334444556677789999864  3 2333443  566668877765444434444556789999988


Q ss_pred             EEEeeC-----CCeEEEEECCCCC-CCCeEec-CCcccEEEEEEeCCCCcEEEEeeCCCeEEEE--eCCC-CceEEeec-
Q 024372          117 LLTGGF-----EKILRIFDLNRPD-APPREVG-NSSGSIRTVAWLHSDQTILSSCTDSGGVRLW--DARS-GKIVQTLE-  185 (268)
Q Consensus       117 l~s~~~-----d~~i~~~d~~~~~-~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iw--d~~~-~~~~~~~~-  185 (268)
                      |+..+.     +-.+..|++..+. ....... ...+......|+|++..++.++..+|...||  ++.. +.....+. 
T Consensus       245 Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~  324 (428)
T PRK01029        245 LAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTK  324 (428)
T ss_pred             EEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEecc
Confidence            876542     2233446665421 1122222 2223345678999998777666555655555  4432 22233332 


Q ss_pred             CCCCEEEEEECCCCcEEEE-eC---CCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEe-ccC--CCeEEEEECC
Q 024372          186 TKSPVTSAEVSRDGRYITT-AD---GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIA-GGE--DMWVHVFDFH  258 (268)
Q Consensus       186 ~~~~v~~~~~s~~g~~l~~-~~---~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gs~--d~~i~~wd~~  258 (268)
                      ....+....|+|||+.|+. +.   ...|.+||+...+...............++| +|++|+. +..  ...|++||+.
T Consensus       325 ~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSp-DG~~L~f~~~~~g~~~L~~vdl~  403 (428)
T PRK01029        325 KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAI-DSLHLVYSAGNSNESELYLISLI  403 (428)
T ss_pred             CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECC-CCCEEEEEECCCCCceEEEEECC
Confidence            2334567899999998764 32   2468999998775543322223344567777 5776664 332  4579999998


Q ss_pred             CCcEEee
Q 024372          259 TGEQIAI  265 (268)
Q Consensus       259 ~g~~~~~  265 (268)
                      +++....
T Consensus       404 ~g~~~~L  410 (428)
T PRK01029        404 TKKTRKI  410 (428)
T ss_pred             CCCEEEe
Confidence            7776544

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.32  E-value=1.7e-10  Score=104.74  Aligned_cols=191  Identities=15%  Similarity=0.193  Sum_probs=144.1

Q ss_pred             cEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeeccCCeE-----EEEEECCCCCEEEEeeCCCeEEEEECCCCCCC
Q 024372           63 AVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIV-----RACAFSEDTHLLLTGGFEKILRIFDLNRPDAP  137 (268)
Q Consensus        63 ~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v-----~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~  137 (268)
                      .|....+.....+++....+..+-+||...........+.+..     .-+.++++..++++|+--++|.+|... ....
T Consensus        89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~-~dn~  167 (967)
T KOG0974|consen   89 WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPH-EDNK  167 (967)
T ss_pred             cccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecc-ccCC
Confidence            3444555566677788888889999999888877777666532     234568888899999999999999986 3333


Q ss_pred             CeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEE--eecCCCCEEEEEECCCCcEEEEeCCCeEEEEeC
Q 024372          138 PREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQ--TLETKSPVTSAEVSRDGRYITTADGSSVKFWDA  215 (268)
Q Consensus       138 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~--~~~~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~  215 (268)
                      ......|.+.+..+.++.++ .++++.++|+++|+|++.+++...  -|.|.+.+-.+++.|+ +.++.+.|-+.++|+.
T Consensus       168 p~~l~GHeG~iF~i~~s~dg-~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n-~i~t~gedctcrvW~~  245 (967)
T KOG0974|consen  168 PIRLKGHEGSIFSIVTSLDG-RYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN-RIITVGEDCTCRVWGV  245 (967)
T ss_pred             cceecccCCceEEEEEccCC-cEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc-eeEEeccceEEEEEec
Confidence            44566789999999998765 467778899999999999988765  3567778999999999 6666788999999975


Q ss_pred             CCceeeeEEeCCC--CceeeEEcCCCCCEEEeccCCCeEEEEECC
Q 024372          216 NHFGLVKGYNMPC--NTESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (268)
Q Consensus       216 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~  258 (268)
                      .. ..+..|..+.  ....+...+ ...+.+|++.|+.+++|+..
T Consensus       246 ~~-~~l~~y~~h~g~~iw~~~~~~-~~~~~vT~g~Ds~lk~~~l~  288 (967)
T KOG0974|consen  246 NG-TQLEVYDEHSGKGIWKIAVPI-GVIIKVTGGNDSTLKLWDLN  288 (967)
T ss_pred             cc-ceehhhhhhhhcceeEEEEcC-CceEEEeeccCcchhhhhhh
Confidence            43 2334554332  345555554 46788899999999999975

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.30  E-value=2.4e-10  Score=97.28  Aligned_cols=183  Identities=16%  Similarity=0.145  Sum_probs=114.7

Q ss_pred             cCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEe--eC--ccCcEEEEEecCCCc-EEEEeeCCCcEEEEeCCCCCeeeeec
Q 024372           26 PITPDGFFLVSASKDSSPMLRNGETGDWIGTF--EG--HKGAVWSCCLDANAL-FSASGSADFTAKLWDALTGDEKHSFE  100 (268)
Q Consensus        26 ~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~--~~--h~~~V~~~~~~~~~~-~l~s~s~D~~v~iw~~~~~~~~~~~~  100 (268)
                      +-+++|.-|+.|-.-|.+++.|....+..+.|  ..  .+..|.++.|-|.+. .++.+-++|.++++|.+..-.     
T Consensus       180 ~a~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~-----  254 (636)
T KOG2394|consen  180 TATPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCG-----  254 (636)
T ss_pred             ccCCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccccc-----
Confidence            34578888999999999998887764322222  11  246799999976543 445556789999998621110     


Q ss_pred             cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCce
Q 024372          101 HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI  180 (268)
Q Consensus       101 ~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~  180 (268)
                      .+.  .+-...+++..+....       |--.....+.......++.+..++|++++.+++ +-+.||.+||+|..+.+.
T Consensus       255 ~t~--p~~~~~k~~~~f~i~t-------~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA-~VSqDGfLRvF~fdt~eL  324 (636)
T KOG2394|consen  255 ATA--PSYQALKDGDQFAILT-------SKSKKTRNPVARWHIGEGSINEFAFSPDGKYLA-TVSQDGFLRIFDFDTQEL  324 (636)
T ss_pred             CCC--CcccccCCCCeeEEee-------eeccccCCccceeEeccccccceeEcCCCceEE-EEecCceEEEeeccHHHH
Confidence            000  0111122333333211       100000011222222345788999999776554 556779999999998776


Q ss_pred             EEeec-CCCCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeE
Q 024372          181 VQTLE-TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKG  223 (268)
Q Consensus       181 ~~~~~-~~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~  223 (268)
                      +..++ .-+...|++|||||+||+++ +|.-|.+|.+...+.+..
T Consensus       325 lg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVAR  369 (636)
T KOG2394|consen  325 LGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVAR  369 (636)
T ss_pred             HHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEe
Confidence            65554 24668999999999999875 788999999977766644

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.29  E-value=6.2e-10  Score=95.69  Aligned_cols=185  Identities=12%  Similarity=0.202  Sum_probs=137.8

Q ss_pred             CCCcEEEEEeCCCCeEEeeCCCCCeEEEee--Ccc-Cc----EE--EEEecC--------------CCcEEEEeeCCCcE
Q 024372           29 PDGFFLVSASKDSSPMLRNGETGDWIGTFE--GHK-GA----VW--SCCLDA--------------NALFSASGSADFTA   85 (268)
Q Consensus        29 ~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~--~h~-~~----V~--~~~~~~--------------~~~~l~s~s~D~~v   85 (268)
                      |.+.|+|..+.||-++||+..++++...|.  .|. +.    ++  .+..+|              +...++-|-..|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            457899999999999999999987766552  111 11    11  111222              34456777778999


Q ss_pred             EEEeCCCCCeeeeec---cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEE
Q 024372           86 KLWDALTGDEKHSFE---HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILS  162 (268)
Q Consensus        86 ~iw~~~~~~~~~~~~---~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  162 (268)
                      .+++...++....+.   |...|.++.++.+..++.+++.|..+-.|+.... .........+..+.+++++|++..++ 
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~-~~~~~~~~~~~~~~sl~is~D~~~l~-  160 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK-VIIRIWKEQKPLVSSLCISPDGKILL-  160 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc-eeeeeeccCCCccceEEEcCCCCEEE-
Confidence            999999999877775   7889999999999999999999999999997543 23344444455677888899865444 


Q ss_pred             EeeCCCeEEEEeCCCCceEEeecCC-CCEEEEEECCC-----CcEEEEeC--CCeEEEEeCCC
Q 024372          163 SCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRD-----GRYITTAD--GSSVKFWDANH  217 (268)
Q Consensus       163 ~~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~s~~-----g~~l~~~~--~~~v~~wd~~~  217 (268)
                      +++  ++|++||+.+++.+.+|.+| ++|.++.|.-+     |+++.+++  ++.+.+|-++.
T Consensus       161 ~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  161 TAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             ecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            433  78999999999999999876 56899998776     77877654  46677886643

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.28  E-value=1.4e-11  Score=105.23  Aligned_cols=201  Identities=17%  Similarity=0.257  Sum_probs=135.1

Q ss_pred             EEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCC-------CCeeeee-ccCCeEEEEEECCCCCEEEEeeCCCe
Q 024372           54 IGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT-------GDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKI  125 (268)
Q Consensus        54 ~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~-------~~~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~  125 (268)
                      +..|.||+..|+.++--.+..-+++++.|++|++|.+..       ..+..++ .|+.+|..+.|-.+.+.+++  -|+.
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~g  805 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGG  805 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCc
Confidence            456789999999987666666778999999999999853       2244444 38999999999888877764  5789


Q ss_pred             EEEEECCCCCCCCeEec----CCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecC------CCCEEEEEE
Q 024372          126 LRIFDLNRPDAPPREVG----NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET------KSPVTSAEV  195 (268)
Q Consensus       126 i~~~d~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~------~~~v~~~~~  195 (268)
                      |.+||.--+....+...    ...+.|.|+- +-+...+++.|+...+|+++|.|.++.+..++.      ...+.++++
T Consensus       806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV  884 (1034)
T KOG4190|consen  806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV  884 (1034)
T ss_pred             ceeecccccchhHhhhcCcccCCCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence            99999755444332221    1122344432 112334566668889999999999987665532      234789999


Q ss_pred             CCCCcEEEEe-CCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEE-EECC
Q 024372          196 SRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHV-FDFH  258 (268)
Q Consensus       196 s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~-wd~~  258 (268)
                      .|.|+.++.+ ++|.|.+-|.+++..+..+.-- .........++++.++....|-.+-| |..-
T Consensus       885 a~~GN~lAa~LSnGci~~LDaR~G~vINswrpm-ecdllqlaapsdq~L~~saldHslaVnWhal  948 (1034)
T KOG4190|consen  885 ADKGNKLAAALSNGCIAILDARNGKVINSWRPM-ECDLLQLAAPSDQALAQSALDHSLAVNWHAL  948 (1034)
T ss_pred             ccCcchhhHHhcCCcEEEEecCCCceeccCCcc-cchhhhhcCchhHHHHhhcccceeEeeehhc
Confidence            9999998765 6789999999998877655421 11112222234555555555666666 6543

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.28  E-value=2.2e-11  Score=104.10  Aligned_cols=236  Identities=19%  Similarity=0.233  Sum_probs=156.5

Q ss_pred             eeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC-C------CeEEEeeCccCcEEEEEecCCCcEEEEeeCCCc
Q 024372           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-G------DWIGTFEGHKGAVWSCCLDANALFSASGSADFT   84 (268)
Q Consensus        12 ~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~-~------~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~   84 (268)
                      +.||++.|++++--.   +.+-++++|.|+++++|.++. |      .+..++..|+.+|..+.|-.+.++++++  |+-
T Consensus       731 f~GH~~~iRai~Aid---NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g  805 (1034)
T KOG4190|consen  731 FTGHQEKIRAIAAID---NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG  805 (1034)
T ss_pred             ccCcHHHhHHHHhcc---cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence            359999999886542   345688999999999998753 1      2667788999999999998888888766  999


Q ss_pred             EEEEeCCCCCeeeeec---cCCeEEEEEE--CCCCCEEEEe-eCCCeEEEEECCCCCCCCeEe----cCCcccEEEEEEe
Q 024372           85 AKLWDALTGDEKHSFE---HKHIVRACAF--SEDTHLLLTG-GFEKILRIFDLNRPDAPPREV----GNSSGSIRTVAWL  154 (268)
Q Consensus        85 v~iw~~~~~~~~~~~~---~~~~v~~v~~--~~~~~~l~s~-~~d~~i~~~d~~~~~~~~~~~----~~~~~~v~~~~~~  154 (268)
                      +.+||.-.+.......   ....+..+..  +-+..+++.| +...+++++|.+..+......    ...++.+.+++..
T Consensus       806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa  885 (1034)
T KOG4190|consen  806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA  885 (1034)
T ss_pred             ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence            9999987666544221   1122222222  3255566665 788999999987654332211    2345678899988


Q ss_pred             CCCCcEEEEeeCCCeEEEEeCCCCceEEeec-CCCCEEEEEECCCCcEEE-EeCCCeEEE-EeCCCceeeeEEeCCCCce
Q 024372          155 HSDQTILSSCTDSGGVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYIT-TADGSSVKF-WDANHFGLVKGYNMPCNTE  231 (268)
Q Consensus       155 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~-~~~~~~v~~-wd~~~~~~~~~~~~~~~~~  231 (268)
                      +.+.++.++ -..|.|-+.|.|+|..+.... +......++- |...+++ +..|..+-+ |..-.+.  -.++.+.++.
T Consensus       886 ~~GN~lAa~-LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~saldHslaVnWhaldgi--mh~q~kpppe  961 (1034)
T KOG4190|consen  886 DKGNKLAAA-LSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWHALDGI--MHLQDKPPPE  961 (1034)
T ss_pred             cCcchhhHH-hcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhcccceeEeeehhcCCe--eeeccCCCCc
Confidence            877766555 445999999999999887654 3444444443 3334444 445777777 7654432  2233333334


Q ss_pred             eeEEcCCCCCEEEeccCCCeEEEEE
Q 024372          232 SASLEPKLGNIFIAGGEDMWVHVFD  256 (268)
Q Consensus       232 ~~~~~~~~~~~~~~gs~d~~i~~wd  256 (268)
                      ...+...-|.-++++.....+.||.
T Consensus       962 pahflqsvgpSLV~a~~Gn~lgVYa  986 (1034)
T KOG4190|consen  962 PAHFLQSVGPSLVTAQNGNILGVYA  986 (1034)
T ss_pred             chhhhhccCceeEEeccCcEEEEEe
Confidence            4444333466788888888888885

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.26  E-value=2.5e-09  Score=91.55  Aligned_cols=237  Identities=17%  Similarity=0.250  Sum_probs=144.5

Q ss_pred             CeeeEEEecCCCCCcEEEEE-----eC-----CCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEE
Q 024372           18 PVVDLFYSPITPDGFFLVSA-----SK-----DSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKL   87 (268)
Q Consensus        18 ~v~~~~f~~~~~dg~~l~s~-----s~-----d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~i   87 (268)
                      .+.++.|+|   -|.+|.+-     ..     .-.+++|+++++-....+......-+...|+.|..+.|- -..+.+.+
T Consensus        75 ~~~~L~fSP---~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~ar-lv~nev~f  150 (566)
T KOG2315|consen   75 KTYDLLFSP---KGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAAR-LVSNEVQF  150 (566)
T ss_pred             eeeeeeecc---cccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhhh-hhcceEEE
Confidence            677888886   67788664     22     244569999996555555432222256788887765332 12456788


Q ss_pred             EeCCCCCeeeeeccCCeEEEE----------------------------------------------------EECCCCC
Q 024372           88 WDALTGDEKHSFEHKHIVRAC----------------------------------------------------AFSEDTH  115 (268)
Q Consensus        88 w~~~~~~~~~~~~~~~~v~~v----------------------------------------------------~~~~~~~  115 (268)
                      |+....+....--|...+...                                                    .|++-+.
T Consensus       151 ~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt  230 (566)
T KOG2315|consen  151 YDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGT  230 (566)
T ss_pred             EecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCc
Confidence            877553321111111122222                                                    2333222


Q ss_pred             -E--EEEeeCCC---------eEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEE-eeCCCeEEEEeCCCCceEE
Q 024372          116 -L--LLTGGFEK---------ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS-CTDSGGVRLWDARSGKIVQ  182 (268)
Q Consensus       116 -~--l~s~~~d~---------~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~d~~i~iwd~~~~~~~~  182 (268)
                       +  |++..-|+         ++.+.++..  ..........|+|.++.|++.+..+.+. |.---.+.|+|++ +..+.
T Consensus       231 ~LLvLastdVDktn~SYYGEq~Lyll~t~g--~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~  307 (566)
T KOG2315|consen  231 ALLVLASTDVDKTNASYYGEQTLYLLATQG--ESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVF  307 (566)
T ss_pred             eEEEEEEEeecCCCccccccceEEEEEecC--ceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeE
Confidence             1  11221221         233334331  1112222346899999999988665443 4444589999998 56666


Q ss_pred             eecCCCCEEEEEECCCCcEEE-EeC---CCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccC------CCeE
Q 024372          183 TLETKSPVTSAEVSRDGRYIT-TAD---GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE------DMWV  252 (268)
Q Consensus       183 ~~~~~~~v~~~~~s~~g~~l~-~~~---~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~------d~~i  252 (268)
                      .+. .++-+++-|+|.|++++ +|-   .|.|.+||+.+++++..+... +...+.|+| +|++|+|+..      |..+
T Consensus       308 df~-egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~-~tt~~eW~P-dGe~flTATTaPRlrvdNg~  384 (566)
T KOG2315|consen  308 DFP-EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA-NTTVFEWSP-DGEYFLTATTAPRLRVDNGI  384 (566)
T ss_pred             eCC-CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC-CceEEEEcC-CCcEEEEEeccccEEecCCe
Confidence            554 35678999999999875 442   478999999998888766643 455677777 7999998865      6779


Q ss_pred             EEEECCCCcEEee
Q 024372          253 HVFDFHTGEQIAI  265 (268)
Q Consensus       253 ~~wd~~~g~~~~~  265 (268)
                      ++|+. +|.+++.
T Consensus       385 Kiwhy-tG~~l~~  396 (566)
T KOG2315|consen  385 KIWHY-TGSLLHE  396 (566)
T ss_pred             EEEEe-cCceeeh
Confidence            99996 6877764

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.24  E-value=9.3e-11  Score=111.62  Aligned_cols=191  Identities=13%  Similarity=0.209  Sum_probs=140.6

Q ss_pred             eCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeecc--CCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCC
Q 024372           58 EGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEH--KHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPD  135 (268)
Q Consensus        58 ~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~--~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~  135 (268)
                      +.|-..|+.+.-+|...+-+||+.||.+++|....++.+..+..  +..|+.+.|+.+|+.+..+..||.+-+|... + 
T Consensus      2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-p- 2282 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-P- 2282 (2439)
T ss_pred             ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-C-
Confidence            33455676666677777778999999999999999888777753  3568888899999999999999999999975 2 


Q ss_pred             CCCeEecCCcccEEEEEEeCCCCcEEEE--eeCCCeEEEEeCCC---CceEEeecCCCCEEEEEECCCCcEEEEe-CCCe
Q 024372          136 APPREVGNSSGSIRTVAWLHSDQTILSS--CTDSGGVRLWDARS---GKIVQTLETKSPVTSAEVSRDGRYITTA-DGSS  209 (268)
Q Consensus       136 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~d~~i~iwd~~~---~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~  209 (268)
                      .+......|.-....+.|...  .++.+  +++++.+-+||.-.   ..+++ .-|...+.++++.|....++++ .+|.
T Consensus      2283 k~~~s~qchnk~~~Df~Fi~s--~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr~G~ 2359 (2439)
T KOG1064|consen 2283 KPYTSWQCHNKALSDFRFIGS--LLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGRKGE 2359 (2439)
T ss_pred             cceeccccCCccccceeeeeh--hhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCCcCc
Confidence            222333355556666776642  12222  35667899999732   23455 3455678999999998877664 6899


Q ss_pred             EEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEE
Q 024372          210 VKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (268)
Q Consensus       210 v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~  263 (268)
                      |++||++...++.+|+.        +.  ..++|++|+..|.|++|++..=..+
T Consensus      2360 v~l~D~rqrql~h~~~~--------~~--~~~~f~~~ss~g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2360 VCLFDIRQRQLRHTFQA--------LD--TREYFVTGSSEGNIKIWRLSEFGLL 2403 (2439)
T ss_pred             EEEeehHHHHHHHHhhh--------hh--hhheeeccCcccceEEEEccccchh
Confidence            99999988776665554        22  4789999999999999998654443

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.24  E-value=3.7e-10  Score=90.40  Aligned_cols=237  Identities=17%  Similarity=0.272  Sum_probs=153.0

Q ss_pred             cCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC-----CCeEEEeeCcc------------CcEEEEEecCCC--cE
Q 024372           15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-----GDWIGTFEGHK------------GAVWSCCLDANA--LF   75 (268)
Q Consensus        15 h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~-----~~~~~~~~~h~------------~~V~~~~~~~~~--~~   75 (268)
                      ..+.|+++.|..   .|.||++|-..|.+.++.-+.     .++...|++|+            ..|..+.|-.++  ..
T Consensus        25 ead~ItaVefd~---tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~h  101 (460)
T COG5170          25 EADKITAVEFDE---TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNH  101 (460)
T ss_pred             ccceeeEEEecc---ccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcce
Confidence            456789999974   789999999889998885433     23455567775            346777765433  23


Q ss_pred             EEEeeCCCcEEEEeCCCCCe------------------------------------------eee--eccCCeEEEEEEC
Q 024372           76 SASGSADFTAKLWDALTGDE------------------------------------------KHS--FEHKHIVRACAFS  111 (268)
Q Consensus        76 l~s~s~D~~v~iw~~~~~~~------------------------------------------~~~--~~~~~~v~~v~~~  111 (268)
                      ++-...|++|++|.+.....                                          .+.  -.|+--+++++|+
T Consensus       102 FLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~N  181 (460)
T COG5170         102 FLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFN  181 (460)
T ss_pred             EEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeec
Confidence            45556799999999854310                                          000  0144457889999


Q ss_pred             CCCCEEEEeeCCCeEEEEECCCCCCCCeE--ecCC-----cccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCce----
Q 024372          112 EDTHLLLTGGFEKILRIFDLNRPDAPPRE--VGNS-----SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI----  180 (268)
Q Consensus       112 ~~~~~l~s~~~d~~i~~~d~~~~~~~~~~--~~~~-----~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~----  180 (268)
                      .|...++++ .|-.|.+|+++-.......  +..|     ...|++..|.|...+++..++..|+|++-|+|....    
T Consensus       182 sD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~  260 (460)
T COG5170         182 SDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNS  260 (460)
T ss_pred             Cchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCc
Confidence            998888875 5678999998644322221  1122     224667778887777766666779999999994321    


Q ss_pred             EEee----cC---------CCCEEEEEECCCCcEEEEeCCCeEEEEeCCC-ceeeeEEeCCCCc----------------
Q 024372          181 VQTL----ET---------KSPVTSAEVSRDGRYITTADGSSVKFWDANH-FGLVKGYNMPCNT----------------  230 (268)
Q Consensus       181 ~~~~----~~---------~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~-~~~~~~~~~~~~~----------------  230 (268)
                      .+.+    .+         ...+..+.|+++|+++++-+=-+|++||.+. ..++++.+.++..                
T Consensus       261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdk  340 (460)
T COG5170         261 KKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDK  340 (460)
T ss_pred             hhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhhhhccceeee
Confidence            1111    11         1357789999999999887667999999865 3567777654210                


Q ss_pred             eeeEEcCCCCCEEEeccCCCeEEEEE
Q 024372          231 ESASLEPKLGNIFIAGGEDMWVHVFD  256 (268)
Q Consensus       231 ~~~~~~~~~~~~~~~gs~d~~i~~wd  256 (268)
                      ..+.++. +.+.+.+||....--+|-
T Consensus       341 FeisfSg-d~~~v~sgsy~NNfgiyp  365 (460)
T COG5170         341 FEISFSG-DDKHVLSGSYSNNFGIYP  365 (460)
T ss_pred             EEEEecC-Ccccccccccccceeeec
Confidence            1223333 456677777655544554

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.23  E-value=1e-10  Score=111.32  Aligned_cols=196  Identities=19%  Similarity=0.278  Sum_probs=140.2

Q ss_pred             cCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeC-ccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCC
Q 024372           15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG-HKGAVWSCCLDANALFSASGSADFTAKLWDALTG   93 (268)
Q Consensus        15 h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~-h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~   93 (268)
                      |=+.|.++.-+|..|   +-+||+.||.+++|....+..+..++. -.+.|..+.|+.+|..+.-+-.||.+-+|.+. .
T Consensus      2207 ~v~~v~r~~sHp~~~---~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-p 2282 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDP---YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-P 2282 (2439)
T ss_pred             ccCceeeecCCCCCc---eEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-C
Confidence            344566666666444   567999999999999888888777752 23789999999999888888889999999987 3


Q ss_pred             Ceeeee-ccCCeEEEEEECCCCCEEEEe---eCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCe
Q 024372           94 DEKHSF-EHKHIVRACAFSEDTHLLLTG---GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG  169 (268)
Q Consensus        94 ~~~~~~-~~~~~v~~v~~~~~~~~l~s~---~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~  169 (268)
                      ++.... .|........|-.  ..++++   +.++.+.+||...+....-.-..|.+..+++++.|..+ ++.+|+.+|.
T Consensus      2283 k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~q-llisggr~G~ 2359 (2439)
T KOG1064|consen 2283 KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQ-LLISGGRKGE 2359 (2439)
T ss_pred             cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcce-EEEecCCcCc
Confidence            333333 2555555555433  455554   46688999997543322222256888999999999876 5557778899


Q ss_pred             EEEEeCCCCceEEeecCCCCEEEEEECCCCcEEE-EeCCCeEEEEeCCCceeeeEEeC
Q 024372          170 VRLWDARSGKIVQTLETKSPVTSAEVSRDGRYIT-TADGSSVKFWDANHFGLVKGYNM  226 (268)
Q Consensus       170 i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~~~~~~v~~wd~~~~~~~~~~~~  226 (268)
                      |.+||+|..+.+++++.        +. ...+++ .+..|.++||++....+++++..
T Consensus      2360 v~l~D~rqrql~h~~~~--------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2360 VCLFDIRQRQLRHTFQA--------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred             EEEeehHHHHHHHHhhh--------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence            99999998888777764        33 333444 45678999999988877776653

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.19  E-value=3.7e-07  Score=74.82  Aligned_cols=245  Identities=13%  Similarity=0.172  Sum_probs=158.9

Q ss_pred             ecCCCeeeEEEecCCCCCcEEEEEeCC---CCeEEe--eCCCCCeE--EEeeCccCcEEEEEecCCCcEEEEeeC-CCcE
Q 024372           14 GHSRPVVDLFYSPITPDGFFLVSASKD---SSPMLR--NGETGDWI--GTFEGHKGAVWSCCLDANALFSASGSA-DFTA   85 (268)
Q Consensus        14 ~h~~~v~~~~f~~~~~dg~~l~s~s~d---~~i~iw--~~~~~~~~--~~~~~h~~~V~~~~~~~~~~~l~s~s~-D~~v   85 (268)
                      .+.+-.+=++|+|   ++++|.++-.+   +.+..+  |..+|++.  .....-..+-.-++++++++++++++. -+.|
T Consensus        37 ~~~~nptyl~~~~---~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v  113 (346)
T COG2706          37 AELGNPTYLAVNP---DQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSV  113 (346)
T ss_pred             cccCCCceEEECC---CCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceE
Confidence            4555666677874   77788888665   555554  55557643  111112223366889999999988884 5889


Q ss_pred             EEEeCCCCC-e---eeeeccCCe----------EEEEEECCCCCEEEEee-CCCeEEEEECCCCCCCCeEe--cCCcccE
Q 024372           86 KLWDALTGD-E---KHSFEHKHI----------VRACAFSEDTHLLLTGG-FEKILRIFDLNRPDAPPREV--GNSSGSI  148 (268)
Q Consensus        86 ~iw~~~~~~-~---~~~~~~~~~----------v~~v~~~~~~~~l~s~~-~d~~i~~~d~~~~~~~~~~~--~~~~~~v  148 (268)
                      .++.+.+.. .   .....|...          +....+.|++++|++.. .--.|.+|++..+.......  ......-
T Consensus       114 ~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GP  193 (346)
T COG2706         114 SVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGP  193 (346)
T ss_pred             EEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCc
Confidence            999986532 2   223334333          77888999999888864 22357899988654332211  1234456


Q ss_pred             EEEEEeCCCCcEEEEeeCCCeEEEEeCCCC----ceEEeec-------CCCCEEEEEECCCCcEEEEeC--CCeEEEEeC
Q 024372          149 RTVAWLHSDQTILSSCTDSGGVRLWDARSG----KIVQTLE-------TKSPVTSAEVSRDGRYITTAD--GSSVKFWDA  215 (268)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~----~~~~~~~-------~~~~v~~~~~s~~g~~l~~~~--~~~v~~wd~  215 (268)
                      ..+.|.|+++...+.+--+++|-+|.....    ++++.+.       .......|.++|||+||-+++  ...|-+|.+
T Consensus       194 RHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V  273 (346)
T COG2706         194 RHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSV  273 (346)
T ss_pred             ceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEE
Confidence            789999988876666777789999988663    2344332       234577899999999998775  247888877


Q ss_pred             CCc-eeeeEE---eC-CCCceeeEEcCCCCCEEEeccCCC-eEEEEEC--CCCcE
Q 024372          216 NHF-GLVKGY---NM-PCNTESASLEPKLGNIFIAGGEDM-WVHVFDF--HTGEQ  262 (268)
Q Consensus       216 ~~~-~~~~~~---~~-~~~~~~~~~~~~~~~~~~~gs~d~-~i~~wd~--~~g~~  262 (268)
                      ... ..+...   .. ...+..+.+.+ .+++|+++.+++ .|.+|..  +||++
T Consensus       274 ~~~~g~L~~~~~~~teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~d~~TG~L  327 (346)
T COG2706         274 DPDGGKLELVGITPTEGQFPRDFNINP-SGRFLIAANQKSDNITVFERDKETGRL  327 (346)
T ss_pred             cCCCCEEEEEEEeccCCcCCccceeCC-CCCEEEEEccCCCcEEEEEEcCCCceE
Confidence            543 223222   22 22356777777 689888887754 6888865  36664

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.18  E-value=7e-10  Score=91.36  Aligned_cols=157  Identities=16%  Similarity=0.182  Sum_probs=110.8

Q ss_pred             CCCCcEEEEEeCCCCeEEeeCCCC----CeEEEeeCcc--CcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeecc
Q 024372           28 TPDGFFLVSASKDSSPMLRNGETG----DWIGTFEGHK--GAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEH  101 (268)
Q Consensus        28 ~~dg~~l~s~s~d~~i~iw~~~~~----~~~~~~~~h~--~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~  101 (268)
                      +++|++||.+..++.+.+++....    +++..+..-+  ..+..+..+.........+....+.+|....+.+...+.|
T Consensus        71 s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~lGh  150 (390)
T KOG3914|consen   71 SDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPILGH  150 (390)
T ss_pred             CCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcchhhhh
Confidence            468899999988888766654432    3443333322  2344444443333344566778888888777777777889


Q ss_pred             CCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceE
Q 024372          102 KHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIV  181 (268)
Q Consensus       102 ~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~  181 (268)
                      -.-+..|+++||++.++++..|..||+-.............+|+.-|..++.-+ ++. +++++.|++|++||+++|+++
T Consensus       151 vSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~-~~~-LlS~sGD~tlr~Wd~~sgk~L  228 (390)
T KOG3914|consen  151 VSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD-NYL-LLSGSGDKTLRLWDITSGKLL  228 (390)
T ss_pred             hhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc-Cce-eeecCCCCcEEEEecccCCcc
Confidence            899999999999999999999999998766544333344456777888888654 444 455566799999999999998


Q ss_pred             EeecC
Q 024372          182 QTLET  186 (268)
Q Consensus       182 ~~~~~  186 (268)
                      +++..
T Consensus       229 ~t~dl  233 (390)
T KOG3914|consen  229 DTCDL  233 (390)
T ss_pred             cccch
Confidence            77653

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=1.5e-09  Score=90.83  Aligned_cols=246  Identities=18%  Similarity=0.206  Sum_probs=166.0

Q ss_pred             cCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC--C-CeEEEeeCccCcEEEEEecCCCcEEEEeeC-CCcEEEEeC
Q 024372           15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET--G-DWIGTFEGHKGAVWSCCLDANALFSASGSA-DFTAKLWDA   90 (268)
Q Consensus        15 h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~--~-~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~-D~~v~iw~~   90 (268)
                      |...|+-+.-.    -.+++.+||.||.++.|-...  | +.+..++.|-+.|.+++.+.++..+.|.+. |+.+|++|+
T Consensus         8 hrd~i~hv~~t----ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDv   83 (558)
T KOG0882|consen    8 HRDVITHVFPT----KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDV   83 (558)
T ss_pred             ccceeeeEeee----hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEe
Confidence            77778766432    346999999999999996543  3 577788899999999999999999999887 999999999


Q ss_pred             CCCCeeeeeccCCeEEEEEE-CCCC---CEEE-EeeCCCeEEEEECCCCCCC-CeEecCCcccEEEEEEeCCCCcEEEEe
Q 024372           91 LTGDEKHSFEHKHIVRACAF-SEDT---HLLL-TGGFEKILRIFDLNRPDAP-PREVGNSSGSIRTVAWLHSDQTILSSC  164 (268)
Q Consensus        91 ~~~~~~~~~~~~~~v~~v~~-~~~~---~~l~-s~~~d~~i~~~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~  164 (268)
                      ++.....-+.....-..+.| ...|   ..++ +.-.++.|.++|......+ ......|..+|.++.+++.+...+ +.
T Consensus        84 En~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~v-Si  162 (558)
T KOG0882|consen   84 ENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAV-SI  162 (558)
T ss_pred             eccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccccee-ec
Confidence            87654432222221112222 2222   1233 3346688999997644322 234456888999999998776544 44


Q ss_pred             eCCCeEEEEeCCC------CceEEeec----------CCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeC-
Q 024372          165 TDSGGVRLWDARS------GKIVQTLE----------TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNM-  226 (268)
Q Consensus       165 ~~d~~i~iwd~~~------~~~~~~~~----------~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~-  226 (268)
                      ...|-|.-|....      .+....++          .+....++.|+|+|..++. +.|..||+++.++++.++.+.- 
T Consensus       163 D~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~  242 (558)
T KOG0882|consen  163 DISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEV  242 (558)
T ss_pred             cccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhcc
Confidence            4558899998762      11111111          1345678999999999875 5789999999987765543321 


Q ss_pred             -------C-C-------------------------CceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEeecc
Q 024372          227 -------P-C-------------------------NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAITS  267 (268)
Q Consensus       227 -------~-~-------------------------~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~~~  267 (268)
                             + .                         ....++ +..++.+|+.|+-=| |+|.++.|+..+.++.
T Consensus       243 ~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~-fdes~~flly~t~~g-ikvin~~tn~v~ri~g  314 (558)
T KOG0882|consen  243 LTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAV-FDESGNFLLYGTILG-IKVINLDTNTVVRILG  314 (558)
T ss_pred             chhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeE-EcCCCCEEEeeccee-EEEEEeecCeEEEEec
Confidence                   0 0                         001123 334688888887765 9999999999887754

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.14  E-value=1.8e-09  Score=92.85  Aligned_cols=146  Identities=18%  Similarity=0.229  Sum_probs=122.8

Q ss_pred             CCCcEEEEEeCCCCeEEeeCCCCCeEEEee--CccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeec-cCCeE
Q 024372           29 PDGFFLVSASKDSSPMLRNGETGDWIGTFE--GHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIV  105 (268)
Q Consensus        29 ~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~--~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~-~~~~v  105 (268)
                      .|-.+|+-|...|.+.++++..|+...++.  +|-+.|.++.++.+-..|.|++.|+.+-.|+....+..+.+. .+..+
T Consensus        68 ~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~  147 (541)
T KOG4547|consen   68 LDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLV  147 (541)
T ss_pred             CCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCcc
Confidence            356688999999999999999999988886  699999999999888899999999999999999988888775 44568


Q ss_pred             EEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCC-----CCcEEEEeeCCCeEEEEeCCC
Q 024372          106 RACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHS-----DQTILSSCTDSGGVRLWDARS  177 (268)
Q Consensus       106 ~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~d~~i~iwd~~~  177 (268)
                      .+++.+||++.+++++  ++|++||+++.+ ....+.+|.++|++++|--.     +.+++++..-+..+-+|=++.
T Consensus       148 ~sl~is~D~~~l~~as--~~ik~~~~~~ke-vv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  148 SSLCISPDGKILLTAS--RQIKVLDIETKE-VVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             ceEEEcCCCCEEEecc--ceEEEEEccCce-EEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            8899999999999887  789999998754 56778899999999998654     456676655556788886654

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.13  E-value=1e-07  Score=82.26  Aligned_cols=227  Identities=17%  Similarity=0.145  Sum_probs=133.0

Q ss_pred             CCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEE
Q 024372           30 DGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACA  109 (268)
Q Consensus        30 dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~  109 (268)
                      ++..++.++.++.+..+|..+|+.+-+.... +.+.+.-... +..++.+..++.++.||..+++.+.......+...+.
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v~-~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~  181 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLVA-NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLR  181 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCEEE-CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeec
Confidence            3456777888888888888888765443321 1221111111 2344556678899999998888766654332211110


Q ss_pred             --ECC--CCCEEEEeeCCCeEEEEECCCCCCCCeEe-cCCcc--c------E-EEEEEeCCCCcEEEEeeCCCeEEEEeC
Q 024372          110 --FSE--DTHLLLTGGFEKILRIFDLNRPDAPPREV-GNSSG--S------I-RTVAWLHSDQTILSSCTDSGGVRLWDA  175 (268)
Q Consensus       110 --~~~--~~~~l~s~~~d~~i~~~d~~~~~~~~~~~-~~~~~--~------v-~~~~~~~~~~~~~~~~~~d~~i~iwd~  175 (268)
                        -+|  .+..++.+..++.+..+|+++++...+.. ....+  .      + .....  .++.++++ +.+|.+..||.
T Consensus       182 ~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~-~~~g~l~a~d~  258 (377)
T TIGR03300       182 GSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAV-SYQGRVAALDL  258 (377)
T ss_pred             CCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEE-EcCCEEEEEEC
Confidence              011  12366778888899999987765432211 00000  0      0 00111  13344544 45699999999


Q ss_pred             CCCceEEeecCCCCEEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEe-CCCCce-eeEEcCCCCCEEEeccCCCeEE
Q 024372          176 RSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYN-MPCNTE-SASLEPKLGNIFIAGGEDMWVH  253 (268)
Q Consensus       176 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~gs~d~~i~  253 (268)
                      ++|+.+...+... .....+ .++++++.+.++.+..+|..+++.+-.+. ...... +...   .+..+++++.|+.|+
T Consensus       259 ~tG~~~W~~~~~~-~~~p~~-~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i---~g~~l~~~~~~G~l~  333 (377)
T TIGR03300       259 RSGRVLWKRDASS-YQGPAV-DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV---VGGYLVVGDFEGYLH  333 (377)
T ss_pred             CCCcEEEeeccCC-ccCceE-eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE---ECCEEEEEeCCCEEE
Confidence            9999877665321 111222 24455556678899999998887665442 211111 1111   366888899999999


Q ss_pred             EEECCCCcEEeec
Q 024372          254 VFDFHTGEQIAIT  266 (268)
Q Consensus       254 ~wd~~~g~~~~~~  266 (268)
                      ++|.++|+++..+
T Consensus       334 ~~d~~tG~~~~~~  346 (377)
T TIGR03300       334 WLSREDGSFVARL  346 (377)
T ss_pred             EEECCCCCEEEEE
Confidence            9999999987543

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.12  E-value=5.8e-09  Score=82.90  Aligned_cols=153  Identities=15%  Similarity=0.156  Sum_probs=108.7

Q ss_pred             eEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCe--EEEeeCccCcEEEEEecCCC-cEEEEeeCCCcEEEEeCCCCC-ee
Q 024372           21 DLFYSPITPDGFFLVSASKDSSPMLRNGETGDW--IGTFEGHKGAVWSCCLDANA-LFSASGSADFTAKLWDALTGD-EK   96 (268)
Q Consensus        21 ~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~--~~~~~~h~~~V~~~~~~~~~-~~l~s~s~D~~v~iw~~~~~~-~~   96 (268)
                      ++.|++   .|..++++-.+|.+.+-+.....+  +++++.|+-..+.++|+... .++.|||.|+.+..||++..+ .+
T Consensus       126 slD~~~---~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i  202 (339)
T KOG0280|consen  126 SLDIST---SGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI  202 (339)
T ss_pred             EEEeec---cCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence            556654   456688888888887555544433  44889999999999998654 577899999999999998332 21


Q ss_pred             ee--eccCCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEE
Q 024372           97 HS--FEHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLW  173 (268)
Q Consensus        97 ~~--~~~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iw  173 (268)
                      ..  -.|...|.++.-+| .+..+++|++|..|++||.+.-..+...- ...|.|.-+.+.|...+.+.++.-.+..+|-
T Consensus       203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~-~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~  281 (339)
T KOG0280|consen  203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA-KVGGGVWRIKHHPEIFHRLLAACMHNGAKIL  281 (339)
T ss_pred             eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC-ccccceEEEEecchhhhHHHHHHHhcCceEE
Confidence            11  12566777887776 67899999999999999998544333322 3457899999988776544444444667777


Q ss_pred             eCCC
Q 024372          174 DARS  177 (268)
Q Consensus       174 d~~~  177 (268)
                      +...
T Consensus       282 ~~~~  285 (339)
T KOG0280|consen  282 DSSD  285 (339)
T ss_pred             Eecc
Confidence            7654

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.10  E-value=2.5e-09  Score=86.67  Aligned_cols=199  Identities=15%  Similarity=0.193  Sum_probs=135.1

Q ss_pred             cCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC-----------------------------------eEEEe-e
Q 024372           15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD-----------------------------------WIGTF-E   58 (268)
Q Consensus        15 h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~-----------------------------------~~~~~-~   58 (268)
                      -++.|+.+.|.+.. ++..++..++|+++++|.++...                                   +.+.+ .
T Consensus        83 ieEKinkIrw~~~~-n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aN  161 (433)
T KOG1354|consen   83 IEEKINKIRWLDDG-NLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYAN  161 (433)
T ss_pred             hhhhhhhceecCCC-CccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccc
Confidence            35678899998754 46677788999999999764321                                   01112 4


Q ss_pred             CccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeee---c------cCCeEEEEEECC-CCCEEEEeeCCCeEEE
Q 024372           59 GHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF---E------HKHIVRACAFSE-DTHLLLTGGFEKILRI  128 (268)
Q Consensus        59 ~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~---~------~~~~v~~v~~~~-~~~~l~s~~~d~~i~~  128 (268)
                      +|.-.|.++++..|...+.|+ .|-.|.+|+++-......+   .      ....|++..|+| ..++++-.+..|+|++
T Consensus       162 aHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL  240 (433)
T KOG1354|consen  162 AHTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL  240 (433)
T ss_pred             cceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE
Confidence            688889999999998877664 6889999998644332222   1      233588899999 4567777788999999


Q ss_pred             EECCCCC-----CCCe----------EecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeC-CCCceEEeecCCC----
Q 024372          129 FDLNRPD-----APPR----------EVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA-RSGKIVQTLETKS----  188 (268)
Q Consensus       129 ~d~~~~~-----~~~~----------~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~-~~~~~~~~~~~~~----  188 (268)
                      -|++...     ....          .+..-...|..+.|+++|..+++- .. -+|++||+ ...+++.+++.+.    
T Consensus       241 cDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsR-Dy-ltvk~wD~nme~~pv~t~~vh~~lr~  318 (433)
T KOG1354|consen  241 CDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSR-DY-LTVKLWDLNMEAKPVETYPVHEYLRS  318 (433)
T ss_pred             eechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEe-cc-ceeEEEeccccCCcceEEeehHhHHH
Confidence            9997321     1100          011112357788999887766543 33 79999999 5566676665431    


Q ss_pred             ------------CEEEEEECCCCcEEEEe-CCCeEEEEeCCC
Q 024372          189 ------------PVTSAEVSRDGRYITTA-DGSSVKFWDANH  217 (268)
Q Consensus       189 ------------~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~  217 (268)
                                  .-..++|+.++.++++| -....+++++..
T Consensus       319 kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~  360 (433)
T KOG1354|consen  319 KLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLAR  360 (433)
T ss_pred             HHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCC
Confidence                        22467889998888765 477889999643

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.09  E-value=7e-08  Score=77.67  Aligned_cols=216  Identities=16%  Similarity=0.125  Sum_probs=127.5

Q ss_pred             CCCeEEeeCCCCCeEEEeeC---ccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCE
Q 024372           40 DSSPMLRNGETGDWIGTFEG---HKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHL  116 (268)
Q Consensus        40 d~~i~iw~~~~~~~~~~~~~---h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~  116 (268)
                      +++|..+|..+|+.+-...-   ..+.+.. .+ +++..+..++.++.+..||..+++.+..+..+..+.... ...+..
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~-~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~   78 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AV-PDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGR   78 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEET-EE-EETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccce-EE-EeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eecccc
Confidence            56778889888886655432   2222211 22 234556666899999999999999877776444322111 113445


Q ss_pred             EEEeeCCCeEEEEECCCCCCCCeE-ecCC--cccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCC-C---
Q 024372          117 LLTGGFEKILRIFDLNRPDAPPRE-VGNS--SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS-P---  189 (268)
Q Consensus       117 l~s~~~d~~i~~~d~~~~~~~~~~-~~~~--~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~-~---  189 (268)
                      ++.+..++.+..+|..+++...+. ....  ............+..++ .+..++.|..+|+++|+.+....... +   
T Consensus        79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~  157 (238)
T PF13360_consen   79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLY-VGTSSGKLVALDPKTGKLLWKYPVGEPRGSS  157 (238)
T ss_dssp             EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEE-EEETCSEEEEEETTTTEEEEEEESSTT-SS-
T ss_pred             cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEE-EEeccCcEEEEecCCCcEEEEeecCCCCCCc
Confidence            666667889999998877655442 2111  01111111111234444 44546999999999999987664322 1   


Q ss_pred             -------EEEEEECCCCcEEEEeCCCe-EEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCc
Q 024372          190 -------VTSAEVSRDGRYITTADGSS-VKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGE  261 (268)
Q Consensus       190 -------v~~~~~s~~g~~l~~~~~~~-v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~  261 (268)
                             ...-.+..++..++++.++. +.+ |+.+++.+-... ... ....... .+..++.++.++.|+.||.++|+
T Consensus       158 ~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~~~w~~~-~~~-~~~~~~~-~~~~l~~~~~~~~l~~~d~~tG~  233 (238)
T PF13360_consen  158 PISSFSDINGSPVISDGRVYVSSGDGRVVAV-DLATGEKLWSKP-ISG-IYSLPSV-DGGTLYVTSSDGRLYALDLKTGK  233 (238)
T ss_dssp             -EEEETTEEEEEECCTTEEEEECCTSSEEEE-ETTTTEEEEEEC-SS--ECECEEC-CCTEEEEEETTTEEEEEETTTTE
T ss_pred             ceeeecccccceEEECCEEEEEcCCCeEEEE-ECCCCCEEEEec-CCC-ccCCcee-eCCEEEEEeCCCEEEEEECCCCC
Confidence                   12233334555556665654 556 999987553222 122 2221233 46667776699999999999999


Q ss_pred             EE
Q 024372          262 QI  263 (268)
Q Consensus       262 ~~  263 (268)
                      .+
T Consensus       234 ~~  235 (238)
T PF13360_consen  234 VV  235 (238)
T ss_dssp             EE
T ss_pred             EE
Confidence            76

...

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.08  E-value=2e-07  Score=80.46  Aligned_cols=223  Identities=13%  Similarity=0.066  Sum_probs=137.5

Q ss_pred             CCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEE
Q 024372           30 DGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACA  109 (268)
Q Consensus        30 dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~  109 (268)
                      .+.++..++.++.+.-+|..+|+.+-.++-..........  ++..++.++.|+.+..+|..+++.+........+.+..
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p  141 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPP  141 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCC
Confidence            3557888999999999999999876444332221112222  34556677789999999999999877665444332111


Q ss_pred             ECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccE-----EEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEee
Q 024372          110 FSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSI-----RTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL  184 (268)
Q Consensus       110 ~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~  184 (268)
                      .- .+..++.++.++.+..||..+++...+.... ....     ..... . ++.+ ..+..++.+.-+|+++|+.+...
T Consensus       142 ~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~-~~~~~~~~~~sp~~-~-~~~v-~~~~~~g~v~ald~~tG~~~W~~  216 (377)
T TIGR03300       142 LV-ANGLVVVRTNDGRLTALDAATGERLWTYSRV-TPALTLRGSASPVI-A-DGGV-LVGFAGGKLVALDLQTGQPLWEQ  216 (377)
T ss_pred             EE-ECCEEEEECCCCeEEEEEcCCCceeeEEccC-CCceeecCCCCCEE-E-CCEE-EEECCCCEEEEEEccCCCEeeee
Confidence            11 2446677788999999998876543332211 1000     01111 1 2333 44556689999999999876544


Q ss_pred             cCCCC-----------E-EEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeE
Q 024372          185 ETKSP-----------V-TSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWV  252 (268)
Q Consensus       185 ~~~~~-----------v-~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i  252 (268)
                      ....+           + ....+ .++.+++++.++.+..+|.++++.+........ .....   .+..++.++.|+.+
T Consensus       217 ~~~~~~g~~~~~~~~~~~~~p~~-~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~-~~p~~---~~~~vyv~~~~G~l  291 (377)
T TIGR03300       217 RVALPKGRTELERLVDVDGDPVV-DGGQVYAVSYQGRVAALDLRSGRVLWKRDASSY-QGPAV---DDNRLYVTDADGVV  291 (377)
T ss_pred             ccccCCCCCchhhhhccCCccEE-ECCEEEEEEcCCEEEEEECCCCcEEEeeccCCc-cCceE---eCCEEEEECCCCeE
Confidence            32110           0 01111 245556667788999999998877655543221 11111   35667778899999


Q ss_pred             EEEECCCCcEEe
Q 024372          253 HVFDFHTGEQIA  264 (268)
Q Consensus       253 ~~wd~~~g~~~~  264 (268)
                      +.+|..+|+++-
T Consensus       292 ~~~d~~tG~~~W  303 (377)
T TIGR03300       292 VALDRRSGSELW  303 (377)
T ss_pred             EEEECCCCcEEE
Confidence            999999998763

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.08  E-value=2.2e-08  Score=82.90  Aligned_cols=243  Identities=18%  Similarity=0.202  Sum_probs=142.6

Q ss_pred             EeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCc-EEEEeeCCCcEEEEe
Q 024372           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANAL-FSASGSADFTAKLWD   89 (268)
Q Consensus        11 ~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~-~l~s~s~D~~v~iw~   89 (268)
                      .+++|...|.+++|+|. ..| +|..++.+.+|+|.|+++.-.+..+..| .++++|+|..|.. ++..|-..|.|.++|
T Consensus       188 ~lp~~g~~IrdlafSp~-~~G-Ll~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD  264 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPF-NEG-LLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYD  264 (463)
T ss_pred             cccccchhhhhhccCcc-ccc-eeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEE
Confidence            56789999999999983 223 7889999999999999999888888888 8999999998875 566777899999999


Q ss_pred             CCCCCee-eeec---cCCeEEEEEE------CCCCCEEEEeeCCCeEEEEECCC--CCCCCeEecCCcccEEEEEEeCCC
Q 024372           90 ALTGDEK-HSFE---HKHIVRACAF------SEDTHLLLTGGFEKILRIFDLNR--PDAPPREVGNSSGSIRTVAWLHSD  157 (268)
Q Consensus        90 ~~~~~~~-~~~~---~~~~v~~v~~------~~~~~~l~s~~~d~~i~~~d~~~--~~~~~~~~~~~~~~v~~~~~~~~~  157 (268)
                      +...... ..+.   ...+|..++.      .+.+.+++..+.+  ...|...-  +..+........+....+++.+..
T Consensus       265 ~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~s  342 (463)
T KOG1645|consen  265 MRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVS  342 (463)
T ss_pred             ccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCcc
Confidence            9754321 1111   1223333322      2234444444433  23454321  111111112223455556666655


Q ss_pred             CcEEEEeeCCC------eEEE-EeCCCCceEEe----e-cCC----CCEEEEEECCCCcEEEE-e-CCCeEEEEeCCCce
Q 024372          158 QTILSSCTDSG------GVRL-WDARSGKIVQT----L-ETK----SPVTSAEVSRDGRYITT-A-DGSSVKFWDANHFG  219 (268)
Q Consensus       158 ~~~~~~~~~d~------~i~i-wd~~~~~~~~~----~-~~~----~~v~~~~~s~~g~~l~~-~-~~~~v~~wd~~~~~  219 (268)
                      .+++++--.+.      .+-. -|-+.|..+-.    + ...    ..-+.+--.++.++++. + +.+.+.+||...++
T Consensus       343 nh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~e  422 (463)
T KOG1645|consen  343 NHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFE  422 (463)
T ss_pred             ceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhh
Confidence            66666643321      1111 12233332211    1 000    01122333456677765 3 34789999999999


Q ss_pred             eeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEECC
Q 024372          220 LVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (268)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~  258 (268)
                      .++++........++...-.+.-+...=.|..+++|..+
T Consensus       423 vvQ~l~~~epv~Dicp~~~n~~syLa~LTd~~v~Iyk~e  461 (463)
T KOG1645|consen  423 VVQTLALSEPVLDICPNDTNGSSYLALLTDDRVHIYKNE  461 (463)
T ss_pred             eeeecccCcceeecceeecCCcchhhheecceEEEEecC
Confidence            999998886666555443334434444445557777643

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.08  E-value=9.1e-08  Score=75.41  Aligned_cols=206  Identities=12%  Similarity=0.056  Sum_probs=132.9

Q ss_pred             eEEEecCC--CCCcEEEEEeCCCCeEEeeCCCCC-eEEEeeCccCcEEEEEec-CCCcEEEEeeCCCcEEEEeCCCCCee
Q 024372           21 DLFYSPIT--PDGFFLVSASKDSSPMLRNGETGD-WIGTFEGHKGAVWSCCLD-ANALFSASGSADFTAKLWDALTGDEK   96 (268)
Q Consensus        21 ~~~f~~~~--~dg~~l~s~s~d~~i~iw~~~~~~-~~~~~~~h~~~V~~~~~~-~~~~~l~s~s~D~~v~iw~~~~~~~~   96 (268)
                      .+.|-|.+  ..--+||.|+.-|...+|...+.+ ..+....|...|.-+.-- ....-+.-++.|+++++.++.-+...
T Consensus        72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~  151 (344)
T KOG4532|consen   72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK  151 (344)
T ss_pred             cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc
Confidence            56676633  222389999999999999988765 333334455444322111 11222445778999999988654433


Q ss_pred             eeeccC-CeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCC-e-EecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEE
Q 024372           97 HSFEHK-HIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP-R-EVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLW  173 (268)
Q Consensus        97 ~~~~~~-~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~-~-~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iw  173 (268)
                      ...-.+ -.+.++.++++++++++.+....+..|.+....... . ......+.-.+..|+..+ ..+++++.||++-||
T Consensus       152 ~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~-~~FAv~~Qdg~~~I~  230 (344)
T KOG4532|consen  152 FAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND-LQFAVVFQDGTCAIY  230 (344)
T ss_pred             ceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc-ceEEEEecCCcEEEE
Confidence            222111 237889999999999999999999999886543222 2 111222334566776544 567888899999999


Q ss_pred             eCCCCce-EEee----c-CCCCEEEEEECCCCc--EEEEe-CCCeEEEEeCCCceeeeEEeCC
Q 024372          174 DARSGKI-VQTL----E-TKSPVTSAEVSRDGR--YITTA-DGSSVKFWDANHFGLVKGYNMP  227 (268)
Q Consensus       174 d~~~~~~-~~~~----~-~~~~v~~~~~s~~g~--~l~~~-~~~~v~~wd~~~~~~~~~~~~~  227 (268)
                      |+|.-.. +.+.    + +.+.+..+.|+|.|.  +|.-+ .-+.+.+-|+|+++..+..-.+
T Consensus       231 DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~  293 (344)
T KOG4532|consen  231 DVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIP  293 (344)
T ss_pred             EecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecC
Confidence            9987543 2222    2 346799999998773  34444 4478999999998766555443

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.08  E-value=8e-07  Score=75.79  Aligned_cols=193  Identities=19%  Similarity=0.215  Sum_probs=126.3

Q ss_pred             eeEEEecCCCCCcEEEEEeC-CCCeEEeeCCC-CCeEEE---ee----------CccCcEEEEEecCCCcEEEEee-CCC
Q 024372           20 VDLFYSPITPDGFFLVSASK-DSSPMLRNGET-GDWIGT---FE----------GHKGAVWSCCLDANALFSASGS-ADF   83 (268)
Q Consensus        20 ~~~~f~~~~~dg~~l~s~s~-d~~i~iw~~~~-~~~~~~---~~----------~h~~~V~~~~~~~~~~~l~s~s-~D~   83 (268)
                      ..++++   |+|.+|+++.. ++++.++++.. |++...   +.          .-......+.++|++++++... ...
T Consensus        90 ~~i~~~---~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D  166 (345)
T PF10282_consen   90 CHIAVD---PDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGAD  166 (345)
T ss_dssp             EEEEEC---TTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTT
T ss_pred             EEEEEe---cCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCC
Confidence            456666   58999998875 78889998876 443222   21          1124467899999998776543 345


Q ss_pred             cEEEEeCCCCC--eee----eeccCCeEEEEEECCCCCEEEEe-eCCCeEEEEECCCCCCCC---eEecC----C--ccc
Q 024372           84 TAKLWDALTGD--EKH----SFEHKHIVRACAFSEDTHLLLTG-GFEKILRIFDLNRPDAPP---REVGN----S--SGS  147 (268)
Q Consensus        84 ~v~iw~~~~~~--~~~----~~~~~~~v~~v~~~~~~~~l~s~-~~d~~i~~~d~~~~~~~~---~~~~~----~--~~~  147 (268)
                      .|.+|++....  ...    .+.....-+.+.|+|++++++.. -.++.|.++++.......   +....    .  ...
T Consensus       167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~  246 (345)
T PF10282_consen  167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENA  246 (345)
T ss_dssp             EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSS
T ss_pred             EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCC
Confidence            78998886654  222    23345567899999999988665 477889999886222111   11110    1  114


Q ss_pred             EEEEEEeCCCCcEEEEeeCCCeEEEEeCC--CCc--eEEeecCC-CCEEEEEECCCCcEEEEe--CCCeEEEEeC
Q 024372          148 IRTVAWLHSDQTILSSCTDSGGVRLWDAR--SGK--IVQTLETK-SPVTSAEVSRDGRYITTA--DGSSVKFWDA  215 (268)
Q Consensus       148 v~~~~~~~~~~~~~~~~~~d~~i~iwd~~--~~~--~~~~~~~~-~~v~~~~~s~~g~~l~~~--~~~~v~~wd~  215 (268)
                      ...+.++|++.+++++...++.|.+|++.  +++  .+..+... .....++++|+|++|..+  .++.|.+|++
T Consensus       247 ~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~  321 (345)
T PF10282_consen  247 PAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDI  321 (345)
T ss_dssp             EEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred             ceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence            66788899999888888888999999983  343  33444432 337899999999998765  4678998876

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.06  E-value=6.8e-07  Score=75.39  Aligned_cols=218  Identities=14%  Similarity=0.163  Sum_probs=128.4

Q ss_pred             CCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEe-e---------CCCcEEEEeCCCCCeeeeeccCCe------
Q 024372           41 SSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASG-S---------ADFTAKLWDALTGDEKHSFEHKHI------  104 (268)
Q Consensus        41 ~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~-s---------~D~~v~iw~~~~~~~~~~~~~~~~------  104 (268)
                      +++.+.|..+++.+.++..-..+-. + ++||++.++.+ +         ++..|.+||..+.+....+..+..      
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~  104 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG  104 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence            7899999999999998874333332 3 89999877544 4         578999999999999888764322      


Q ss_pred             --EEEEEECCCCCEEEEee-C-CCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCC-CCc
Q 024372          105 --VRACAFSEDTHLLLTGG-F-EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR-SGK  179 (268)
Q Consensus       105 --v~~v~~~~~~~~l~s~~-~-d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~-~~~  179 (268)
                        -...+++|||++++... . ++.+.+.|+.+.+.. .++.-..+. .-.. .+++.+ ++-|.| |......+. +|+
T Consensus       105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv-~ei~vp~~~-~vy~-t~e~~~-~~~~~D-g~~~~v~~d~~g~  179 (352)
T TIGR02658       105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFV-RMMDVPDCY-HIFP-TANDTF-FMHCRD-GSLAKVGYGTKGN  179 (352)
T ss_pred             CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEE-EEEeCCCCc-EEEE-ecCCcc-EEEeec-CceEEEEecCCCc
Confidence              23678999999998766 3 688999999865432 222221111 1111 112222 222332 433333222 122


Q ss_pred             e-EEe---ecC-CCCE-EEEEECC-CCcEEEEeCCCeEEEEeCCC-----ceeeeEEeC--------CCCceeeEEcCCC
Q 024372          180 I-VQT---LET-KSPV-TSAEVSR-DGRYITTADGSSVKFWDANH-----FGLVKGYNM--------PCNTESASLEPKL  239 (268)
Q Consensus       180 ~-~~~---~~~-~~~v-~~~~~s~-~g~~l~~~~~~~v~~wd~~~-----~~~~~~~~~--------~~~~~~~~~~~~~  239 (268)
                      . ...   +.. ..++ ..-.+++ +|+++..+..+.|.+-|+..     ......+..        +.....+.++++.
T Consensus       180 ~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg  259 (352)
T TIGR02658       180 PKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRAR  259 (352)
T ss_pred             eEEeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCC
Confidence            1 111   111 0000 0013455 88888766669999999533     222222221        2234457777765


Q ss_pred             CCEEEec---------cCCCeEEEEECCCCcEEee
Q 024372          240 GNIFIAG---------GEDMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       240 ~~~~~~g---------s~d~~i~~wd~~~g~~~~~  265 (268)
                      +++|+..         .....|-++|.++++.+..
T Consensus       260 ~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~  294 (352)
T TIGR02658       260 DRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRK  294 (352)
T ss_pred             CEEEEEecCCccccccCCCCEEEEEECCCCeEEEE
Confidence            6666643         1225799999999998764

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.04  E-value=7.7e-09  Score=91.44  Aligned_cols=211  Identities=17%  Similarity=0.280  Sum_probs=141.2

Q ss_pred             CCcceeeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccC--cEEEEEecCCC--cEE
Q 024372            1 MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG--AVWSCCLDANA--LFS   76 (268)
Q Consensus         1 ~~~~~~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~--~V~~~~~~~~~--~~l   76 (268)
                      +|-+++.+-+.+. -.+++.++..+|   -|.-+|.|++-|-..+--...+...+-+. |..  .|-.+.|++..  .+-
T Consensus        10 yns~tf~kslsl~-v~~~~~a~si~p---~grdi~lAsr~gl~i~dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~w   84 (1081)
T KOG0309|consen   10 YNSPTFGKSLSLK-VDGGFNAVSINP---SGRDIVLASRQGLYIIDLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPYW   84 (1081)
T ss_pred             CCCCccCceeEEE-ecCcccceeecc---ccchhhhhhhcCeEEEeccCCCCCceeee-ccCcchhcceecccCCCCcee
Confidence            3556666777665 356788888875   67778889888876654333343332232 322  35566676543  333


Q ss_pred             EEeeCCCcEEEEeCCCCC--eee--eeccCCeEEEEEECCC-CCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEE
Q 024372           77 ASGSADFTAKLWDALTGD--EKH--SFEHKHIVRACAFSED-THLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTV  151 (268)
Q Consensus        77 ~s~s~D~~v~iw~~~~~~--~~~--~~~~~~~v~~v~~~~~-~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~  151 (268)
                      +..-..+...+|++....  .+.  ...|...|+.+-|+|+ ..++++++-|-.+..||++++.........-...-..+
T Consensus        85 iVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqV  164 (1081)
T KOG0309|consen   85 IVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQV  164 (1081)
T ss_pred             EEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCcee
Confidence            333334556688874322  222  2246778999999994 56899999999999999998776554443323345678


Q ss_pred             EEeCCCCcEEEEeeCCCeEEEEeCCCCc-eEEeecCC-CCEEEEEECCC--CcEEEEeCCCeEEEEeCCC
Q 024372          152 AWLHSDQTILSSCTDSGGVRLWDARSGK-IVQTLETK-SPVTSAEVSRD--GRYITTADGSSVKFWDANH  217 (268)
Q Consensus       152 ~~~~~~~~~~~~~~~d~~i~iwd~~~~~-~~~~~~~~-~~v~~~~~s~~--g~~l~~~~~~~v~~wd~~~  217 (268)
                      .|+-.+++++++.-. +-|++||+|.|. ++..++.+ ..++.++|..-  +..+.++.|++|++||..+
T Consensus       165 kwnyk~p~vlasshg-~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~k  233 (1081)
T KOG0309|consen  165 KWNYKDPNVLASSHG-NDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSK  233 (1081)
T ss_pred             eecccCcchhhhccC-CceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccc
Confidence            999888888877654 789999999875 45666654 34778888753  4566677899999999753

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.04  E-value=3.5e-07  Score=88.14  Aligned_cols=197  Identities=14%  Similarity=0.166  Sum_probs=126.2

Q ss_pred             eeeEEEecCCCCCcEEEE-EeCCCCeEEeeCCCCCeEEEeeCc-----------------cCcEEEEEecC-CCcEEEEe
Q 024372           19 VVDLFYSPITPDGFFLVS-ASKDSSPMLRNGETGDWIGTFEGH-----------------KGAVWSCCLDA-NALFSASG   79 (268)
Q Consensus        19 v~~~~f~~~~~dg~~l~s-~s~d~~i~iw~~~~~~~~~~~~~h-----------------~~~V~~~~~~~-~~~~l~s~   79 (268)
                      -.++++.+   +++.|.. -+..+.|+++|..++. +.++.+-                 -..-..++++| ++.++++.
T Consensus       626 P~GIavd~---~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad  701 (1057)
T PLN02919        626 PQGLAYNA---KKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAM  701 (1057)
T ss_pred             CcEEEEeC---CCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEE
Confidence            45788874   5655544 4455678888887664 4344220                 01224688998 56667888


Q ss_pred             eCCCcEEEEeCCCCCeeeeecc---------------CCeEEEEEECCCCC-EEEEeeCCCeEEEEECCCCCCCCe----
Q 024372           80 SADFTAKLWDALTGDEKHSFEH---------------KHIVRACAFSEDTH-LLLTGGFEKILRIFDLNRPDAPPR----  139 (268)
Q Consensus        80 s~D~~v~iw~~~~~~~~~~~~~---------------~~~v~~v~~~~~~~-~l~s~~~d~~i~~~d~~~~~~~~~----  139 (268)
                      +.++.|++||..++........               -.....++++|+++ ++++-..++.|++||+.++.....    
T Consensus       702 ~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~  781 (1057)
T PLN02919        702 AGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGD  781 (1057)
T ss_pred             CCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecc
Confidence            8899999999877654321110               11245688999988 555666779999999875431100    


Q ss_pred             --------EecCCc--------ccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecC--------------CCC
Q 024372          140 --------EVGNSS--------GSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET--------------KSP  189 (268)
Q Consensus       140 --------~~~~~~--------~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~--------------~~~  189 (268)
                              .++...        ..-..+++.+++. ++++...++.|++||..++........              -..
T Consensus       782 ~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~  860 (1057)
T PLN02919        782 PTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSE  860 (1057)
T ss_pred             cccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCC
Confidence                    000000        1124677777664 666667779999999988776543221              024


Q ss_pred             EEEEEECCCCcEEEEe-CCCeEEEEeCCCcee
Q 024372          190 VTSAEVSRDGRYITTA-DGSSVKFWDANHFGL  220 (268)
Q Consensus       190 v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~  220 (268)
                      ...++++++|+++++. .++.|++||+.+.+.
T Consensus       861 P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        861 PAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             ceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            6789999999877664 578999999987654

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.03  E-value=7.3e-09  Score=85.48  Aligned_cols=157  Identities=17%  Similarity=0.233  Sum_probs=100.3

Q ss_pred             EEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEec--CCcccEEEEEEeCCCCcE--EEEeeCCCeEEEEeCCCCceEEe
Q 024372          108 CAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG--NSSGSIRTVAWLHSDQTI--LSSCTDSGGVRLWDARSGKIVQT  183 (268)
Q Consensus       108 v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~--~~~~~~d~~i~iwd~~~~~~~~~  183 (268)
                      +..++.++++|.+..++...+++........+...  ...-.-+.+.+..+....  +-..++...+.+|....+.+...
T Consensus        68 ~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~  147 (390)
T KOG3914|consen   68 VLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPI  147 (390)
T ss_pred             cccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcchh
Confidence            44577788888887777766676643221011100  000011223333333332  22344556777887777777777


Q ss_pred             ecCCCCEEEEEECCCCcEEEEeC-CCeEEEEeCCCceeeeEEeC-CCCcee-eEEcCCCCCEEEeccCCCeEEEEECCCC
Q 024372          184 LETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNM-PCNTES-ASLEPKLGNIFIAGGEDMWVHVFDFHTG  260 (268)
Q Consensus       184 ~~~~~~v~~~~~s~~g~~l~~~~-~~~v~~wd~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~gs~d~~i~~wd~~~g  260 (268)
                      +.|-.-+..++++||++++++++ |..||+-..-.-..+..|.. +....+ ++..  +++.|++||.|+++++||..+|
T Consensus       148 lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~--~~~~LlS~sGD~tlr~Wd~~sg  225 (390)
T KOG3914|consen  148 LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLT--DNYLLLSGSGDKTLRLWDITSG  225 (390)
T ss_pred             hhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeec--cCceeeecCCCCcEEEEecccC
Confidence            77767789999999999988875 78999866655455666655 333332 3332  4778999999999999999999


Q ss_pred             cEEeec
Q 024372          261 EQIAIT  266 (268)
Q Consensus       261 ~~~~~~  266 (268)
                      +.++..
T Consensus       226 k~L~t~  231 (390)
T KOG3914|consen  226 KLLDTC  231 (390)
T ss_pred             Cccccc
Confidence            988653

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.03  E-value=4.6e-08  Score=79.48  Aligned_cols=196  Identities=13%  Similarity=0.244  Sum_probs=121.4

Q ss_pred             ecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeC----CCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEe
Q 024372           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNG----ETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (268)
Q Consensus        14 ~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~----~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~   89 (268)
                      .-..++++++|.+   +-..|..|-..|++.-+..    ++...++....|...|..+-|+.....+++.+.|+.+. |.
T Consensus        66 ~mP~~~~~~~y~~---e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~h  141 (404)
T KOG1409|consen   66 YMPSPCSAMEYVS---ESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFA-WH  141 (404)
T ss_pred             hCCCCceEeeeec---cceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceE-EE
Confidence            4456888999986   5568999999999876643    33445666778999999999998888889999986554 44


Q ss_pred             C-CCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCC-CCCeEecCCcccEEEEEEeCCCCcEEEEeeCC
Q 024372           90 A-LTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPD-APPREVGNSSGSIRTVAWLHSDQTILSSCTDS  167 (268)
Q Consensus        90 ~-~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d  167 (268)
                      . +.+.....+.......+..+.-.  +...|...+.+.+--+.... .+...+..|.+++.++.|.+.+. ++.+|..|
T Consensus       142 c~e~~~~lg~Y~~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~-~LfSg~~d  218 (404)
T KOG1409|consen  142 CTESGNRLGGYNFETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQR-LLFSGASD  218 (404)
T ss_pred             eeccCCcccceEeeccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCc-EEEecccc
Confidence            3 33322221111111011111101  33344444555444332111 23345667889999999987665 45566677


Q ss_pred             CeEEEEeCCC--CceEEeecCCCCEEEEEECCCCcE-EEEeCCCeEEEEeCC
Q 024372          168 GGVRLWDARS--GKIVQTLETKSPVTSAEVSRDGRY-ITTADGSSVKFWDAN  216 (268)
Q Consensus       168 ~~i~iwd~~~--~~~~~~~~~~~~v~~~~~s~~g~~-l~~~~~~~v~~wd~~  216 (268)
                      ..+.+||+--  +.....+.+...|..+...+--+. ++++.|+.|.+||..
T Consensus       219 ~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn  270 (404)
T KOG1409|consen  219 HSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN  270 (404)
T ss_pred             CceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence            9999999854  333333334455665555555444 456788999999974

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.03  E-value=1.8e-07  Score=80.50  Aligned_cols=193  Identities=20%  Similarity=0.231  Sum_probs=128.1

Q ss_pred             cCCCeeeEEEecCCCCCcEEEEE-----eCCCCeEEeeCCCCCe------EEEeeCccCcEEEEEecCCCc-E--EEEee
Q 024372           15 HSRPVVDLFYSPITPDGFFLVSA-----SKDSSPMLRNGETGDW------IGTFEGHKGAVWSCCLDANAL-F--SASGS   80 (268)
Q Consensus        15 h~~~v~~~~f~~~~~dg~~l~s~-----s~d~~i~iw~~~~~~~------~~~~~~h~~~V~~~~~~~~~~-~--l~s~s   80 (268)
                      |...|+.++++|- |.-..+|+-     +.-..++||.......      ...|+  .+.| ...|.+.+. +  |++.-
T Consensus       164 ~~~~i~~f~lSpg-p~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFk--adkv-qm~WN~~gt~LLvLastd  239 (566)
T KOG2315|consen  164 SVSGITMLSLSPG-PEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFK--ADKV-QMKWNKLGTALLVLASTD  239 (566)
T ss_pred             eccceeeEEecCC-CCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccc--ccee-EEEeccCCceEEEEEEEe
Confidence            6778888999873 223345442     5666788886542211      11111  1222 344555443 2  23333


Q ss_pred             CCC---------cEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEE--eeCCCeEEEEECCCCCCCCeEecCCcccEE
Q 024372           81 ADF---------TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLT--GGFEKILRIFDLNRPDAPPREVGNSSGSIR  149 (268)
Q Consensus        81 ~D~---------~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s--~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~  149 (268)
                      -|+         ++++.++....+.-.+....+|.++.|+|+++-++.  |-.=..+.+||++..  .  .+....++-+
T Consensus       240 VDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~--~--v~df~egpRN  315 (566)
T KOG2315|consen  240 VDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK--P--VFDFPEGPRN  315 (566)
T ss_pred             ecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC--E--eEeCCCCCcc
Confidence            343         577777775556666667889999999999976665  344567889998642  1  2223467888


Q ss_pred             EEEEeCCCCcEEEEeeCC--CeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEeC-------CCeEEEEeCC
Q 024372          150 TVAWLHSDQTILSSCTDS--GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTAD-------GSSVKFWDAN  216 (268)
Q Consensus       150 ~~~~~~~~~~~~~~~~~d--~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-------~~~v~~wd~~  216 (268)
                      ++-|+|.+..++++|.+.  |.|-+||+.+.+++..+.... ..-+.|+|||.++.++.       |..++||+..
T Consensus       316 ~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~-tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  316 TAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN-TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT  390 (566)
T ss_pred             ceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC-ceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence            999999888778777654  689999999988888877543 34679999999986542       7789999974

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.01  E-value=1.2e-09  Score=61.78  Aligned_cols=39  Identities=38%  Similarity=0.660  Sum_probs=36.9

Q ss_pred             CCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEe
Q 024372           51 GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (268)
Q Consensus        51 ~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~   89 (268)
                      |+++.++.+|++.|.+++|+|++.+++|++.|++|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            467889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.00  E-value=2.8e-10  Score=102.18  Aligned_cols=199  Identities=19%  Similarity=0.252  Sum_probs=139.2

Q ss_pred             EEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEee-CCC-cEEE
Q 024372           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS-ADF-TAKL   87 (268)
Q Consensus        10 ~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s-~D~-~v~i   87 (268)
                      ..++.|+...++++|+.   +-+.|+.|+-.|.|+++++.+|.-....++|..+|.-+.-+.+|..+++.+ +.. ...+
T Consensus      1095 ~~frd~~~~fTc~afs~---~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSG---GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred             hhhhccccceeeEEeec---CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence            45678999999999984   667999999999999999999988889999999999998888887765544 333 5678


Q ss_pred             EeCCC-CCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEec---CCcccEEEEEEeCCCCcEEEE
Q 024372           88 WDALT-GDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG---NSSGSIRTVAWLHSDQTILSS  163 (268)
Q Consensus        88 w~~~~-~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~  163 (268)
                      |++.. +..+++|.   .-.++.|+...+.-+.|+-.....+||+.+.......+.   ..+-.-++..|+|.+..++  
T Consensus      1172 W~~~s~~~~~Hsf~---ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl-- 1246 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFD---EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL-- 1246 (1516)
T ss_pred             hccccccCcccccc---ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe--
Confidence            99853 44444443   234566766443333444445678999887654333222   1222346677888776443  


Q ss_pred             eeCCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEE
Q 024372          164 CTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGY  224 (268)
Q Consensus       164 ~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~  224 (268)
                        .||-  +||+|..+.++.|..-..-..=.|+|+|.-++.-+    .|||+++++.++..
T Consensus      1247 --ndGv--LWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINS----EIwD~RTF~lLh~V 1299 (1516)
T KOG1832|consen 1247 --NDGV--LWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINS----EIWDMRTFKLLHSV 1299 (1516)
T ss_pred             --eCce--eeeeccHHHHhhhhhheecccccccCCCceEEeec----hhhhhHHHHHHhcC
Confidence              3453  69999998888876543333456899998876532    58999998876544

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.99  E-value=2e-07  Score=75.83  Aligned_cols=236  Identities=15%  Similarity=0.092  Sum_probs=150.9

Q ss_pred             eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEee-CCCCCeEEEee-CccCcEEEEEecCCCcEEEEeeCCCcEEEEeC
Q 024372           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRN-GETGDWIGTFE-GHKGAVWSCCLDANALFSASGSADFTAKLWDA   90 (268)
Q Consensus        13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~-~~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~   90 (268)
                      .||.+.|++...-|..+   -+++.+.|.++|||- ...+++-..+. .-..++.++++.++..+|+.|=..|++.-+.+
T Consensus        21 eG~~d~vn~~~l~~~e~---gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~   97 (404)
T KOG1409|consen   21 EGSQDDVNAAILIPKEE---GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFAL   97 (404)
T ss_pred             cCchhhhhhheeccCCC---CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEh
Confidence            48999999888877544   489999999999994 34455443443 12457888899999999988888899888876


Q ss_pred             CCCC-----eeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCc---EEE
Q 024372           91 LTGD-----EKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQT---ILS  162 (268)
Q Consensus        91 ~~~~-----~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~~  162 (268)
                      ...-     .+....|..++..+-|+....++++.+.|+.+..--.+.+...-..        ...+.....+.   +.-
T Consensus        98 sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y--------~~~~~~t~~~~d~~~~f  169 (404)
T KOG1409|consen   98 SEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGY--------NFETPASALQFDALYAF  169 (404)
T ss_pred             hhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccce--------EeeccCCCCceeeEEEE
Confidence            4322     2223358889999999999999999999988754333332211111        00111000111   111


Q ss_pred             EeeCCCeEEEEeC--CCCceEEeecC-CCCEEEEEECCCCcEEEEe-CCCeEEEEeCCCc--eeeeEEeCCCCceeeEEc
Q 024372          163 SCTDSGGVRLWDA--RSGKIVQTLET-KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHF--GLVKGYNMPCNTESASLE  236 (268)
Q Consensus       163 ~~~~d~~i~iwd~--~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~--~~~~~~~~~~~~~~~~~~  236 (268)
                      .|...|.|.+-.+  ..-..+.++.. ...+.+++|.|..+.+.++ .|..+.+||+.-.  .....+....+...+...
T Consensus       170 vGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~  249 (404)
T KOG1409|consen  170 VGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYA  249 (404)
T ss_pred             ecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhh
Confidence            2222244433322  33445666654 4569999999988777664 6889999998543  222233333334444433


Q ss_pred             CCCCCEEEeccCCCeEEEEECCCC
Q 024372          237 PKLGNIFIAGGEDMWVHVFDFHTG  260 (268)
Q Consensus       237 ~~~~~~~~~gs~d~~i~~wd~~~g  260 (268)
                      + --+.++++++|+.|-+||++..
T Consensus       250 ~-~t~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  250 Q-HTRQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             h-hheeeeeccCCCeEEEEeccce
Confidence            3 4678999999999999998643

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.99  E-value=8.1e-09  Score=80.85  Aligned_cols=146  Identities=16%  Similarity=0.135  Sum_probs=93.0

Q ss_pred             CcEEEEEeCCCCeEEeeCCCCC-eEEEeeC-ccCcEEEEEecCCCcEEEEeeC-----CCcEEEEeCCCCCeeeee-ccC
Q 024372           31 GFFLVSASKDSSPMLRNGETGD-WIGTFEG-HKGAVWSCCLDANALFSASGSA-----DFTAKLWDALTGDEKHSF-EHK  102 (268)
Q Consensus        31 g~~l~s~s~d~~i~iw~~~~~~-~~~~~~~-h~~~V~~~~~~~~~~~l~s~s~-----D~~v~iw~~~~~~~~~~~-~~~  102 (268)
                      ++.++++..|+.+.+.+.+.-. ..+.+.. |.+. .+.++-..+.++.++..     -+..+.|++........- ...
T Consensus       101 ~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~  179 (319)
T KOG4714|consen  101 DNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKAL  179 (319)
T ss_pred             CCceEecCCCceEEEEechHHHhhhhhcccccccc-cccceeecccEEecCCcceEeeccceeeeccccccccccccccc
Confidence            5678999999999998876521 1111111 1111 11222233444444321     123444554322211110 122


Q ss_pred             CeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCC
Q 024372          103 HIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS  177 (268)
Q Consensus       103 ~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~  177 (268)
                      ..|.+++-+| +.+++++|+.||.+.+||.+....+.....-|+.++..+-|.|.++.-+.+++.||.+..||..+
T Consensus       180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            3488888899 56688889999999999998766555666678899999999998887677888999999999875

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.94  E-value=4e-09  Score=85.56  Aligned_cols=160  Identities=23%  Similarity=0.337  Sum_probs=113.8

Q ss_pred             EEEEecCC--CcEEEEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCC----CCCC
Q 024372           65 WSCCLDAN--ALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRP----DAPP  138 (268)
Q Consensus        65 ~~~~~~~~--~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~----~~~~  138 (268)
                      +.|+|+-+  +.+ ++.+.+..+-+-|++++... .+..+.-|.++.|...++++..|+.+|.|..+|++..    ....
T Consensus       215 ~~CawSlni~gyh-fs~G~sqqv~L~nvetg~~q-sf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a  292 (425)
T KOG2695|consen  215 WSCAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQ-SFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA  292 (425)
T ss_pred             hhhhhhhccceee-ecccccceeEEEEeeccccc-ccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcce
Confidence            34455532  333 56677888888888877553 3346667888999998999999999999999999865    2222


Q ss_pred             eEecCCcccEEEEEEeC-CCCcEEEEeeCCCeEEEEeCCCCce---EEeecCCCC---EEEEEECCCCcEE-EEeCCCeE
Q 024372          139 REVGNSSGSIRTVAWLH-SDQTILSSCTDSGGVRLWDARSGKI---VQTLETKSP---VTSAEVSRDGRYI-TTADGSSV  210 (268)
Q Consensus       139 ~~~~~~~~~v~~~~~~~-~~~~~~~~~~~d~~i~iwd~~~~~~---~~~~~~~~~---v~~~~~s~~g~~l-~~~~~~~v  210 (268)
                      +.+ -|...++++.... +++.++++ +-+|+|++||+|.-++   +.++++|..   -.-+-+.+...++ +.++|-..
T Consensus       293 ~rl-yh~Ssvtslq~Lq~s~q~LmaS-~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcyt  370 (425)
T KOG2695|consen  293 QRL-YHDSSVTSLQILQFSQQKLMAS-DMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYT  370 (425)
T ss_pred             EEE-EcCcchhhhhhhccccceEeec-cCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEE
Confidence            333 3567888888776 56666655 5669999999998877   788876632   2233445555555 45678889


Q ss_pred             EEEeCCCceeeeEEeCCC
Q 024372          211 KFWDANHFGLVKGYNMPC  228 (268)
Q Consensus       211 ~~wd~~~~~~~~~~~~~~  228 (268)
                      |||.++.+.++.+...+.
T Consensus       371 RiWsl~~ghLl~tipf~~  388 (425)
T KOG2695|consen  371 RIWSLDSGHLLCTIPFPY  388 (425)
T ss_pred             EEEecccCceeeccCCCC
Confidence            999999998888777653

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.93  E-value=2.7e-06  Score=74.27  Aligned_cols=191  Identities=15%  Similarity=-0.005  Sum_probs=114.7

Q ss_pred             CeeeEEEecCCCCCcE-EEEEeCC---CCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEE-EeeCC--CcEEEEeC
Q 024372           18 PVVDLFYSPITPDGFF-LVSASKD---SSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSA-SGSAD--FTAKLWDA   90 (268)
Q Consensus        18 ~v~~~~f~~~~~dg~~-l~s~s~d---~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~-s~s~D--~~v~iw~~   90 (268)
                      ....-.|+   |||+. ++-.+..   ..|.++|..+|+...-. ...+.+....|+||++.++ +.+.+  ..|.++++
T Consensus       189 ~~~~p~wS---pDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl  264 (419)
T PRK04043        189 LNIFPKWA---NKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDT  264 (419)
T ss_pred             CeEeEEEC---CCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEEC
Confidence            56677787   48885 6655554   34556688888654332 2455566678999997654 44434  45777788


Q ss_pred             CCCCeeeeeccCCeEEEEEECCCCCEEEEeeC-CC--eEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCC
Q 024372           91 LTGDEKHSFEHKHIVRACAFSEDTHLLLTGGF-EK--ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS  167 (268)
Q Consensus        91 ~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~-d~--~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d  167 (268)
                      .++.......+......-.|+|||+.++-.+. .+  .|.+.|+..++.  +..... +.. ...|+|++..++.+....
T Consensus       265 ~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~--~rlt~~-g~~-~~~~SPDG~~Ia~~~~~~  340 (419)
T PRK04043        265 NTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV--EQVVFH-GKN-NSSVSTYKNYIVYSSRET  340 (419)
T ss_pred             CCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe--EeCccC-CCc-CceECCCCCEEEEEEcCC
Confidence            77765443233322334579999987776553 23  566667765432  122111 111 247899998877666543


Q ss_pred             --------CeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEE-e-CC--CeEEEEeCCC
Q 024372          168 --------GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-A-DG--SSVKFWDANH  217 (268)
Q Consensus       168 --------~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~-~~--~~v~~wd~~~  217 (268)
                              ..|.+.|+.+++...... ........|+|||++++- . .+  ..+.+.++..
T Consensus       341 ~~~~~~~~~~I~v~d~~~g~~~~LT~-~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g  401 (419)
T PRK04043        341 NNEFGKNTFNLYLISTNSDYIRRLTA-NGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY  401 (419)
T ss_pred             CcccCCCCcEEEEEECCCCCeEECCC-CCCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence                    368888998887543322 223335789999997753 2 22  2355666644

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.87  E-value=1.2e-08  Score=82.97  Aligned_cols=151  Identities=17%  Similarity=0.252  Sum_probs=110.5

Q ss_pred             CCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCC-----CeeeeeccCCe
Q 024372           30 DGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG-----DEKHSFEHKHI  104 (268)
Q Consensus        30 dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~-----~~~~~~~~~~~  104 (268)
                      -|.. ++.+.+..+-+-++++|-.. .|. .++.|.++.|...+.++..|.+.|.|...|+...     .+...+.|...
T Consensus       224 ~gyh-fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ss  300 (425)
T KOG2695|consen  224 MGYH-FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSS  300 (425)
T ss_pred             ceee-ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcc
Confidence            3444 67778888888898887432 343 5678999999887888889999999999999754     46777889999


Q ss_pred             EEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCC--CeEecCCcccEEEEEE-----eCCCCcEEEEeeCCCeEEEEeCC
Q 024372          105 VRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAP--PREVGNSSGSIRTVAW-----LHSDQTILSSCTDSGGVRLWDAR  176 (268)
Q Consensus       105 v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~--~~~~~~~~~~v~~~~~-----~~~~~~~~~~~~~d~~i~iwd~~  176 (268)
                      |+++..-. +++.|++.+.+|+|++||++.-+..  .+...+|   ++..++     .++.+.+++ +++|...|||.++
T Consensus       301 vtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGH---vN~~a~l~~~v~~eeg~I~s-~GdDcytRiWsl~  376 (425)
T KOG2695|consen  301 VTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGH---VNLSAYLPAHVKEEEGSIFS-VGDDCYTRIWSLD  376 (425)
T ss_pred             hhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecc---cccccccccccccccceEEE-ccCeeEEEEEecc
Confidence            99887655 6788999999999999999754331  2222222   333232     344455555 6678999999999


Q ss_pred             CCceEEeecCC
Q 024372          177 SGKIVQTLETK  187 (268)
Q Consensus       177 ~~~~~~~~~~~  187 (268)
                      .|..+.+++..
T Consensus       377 ~ghLl~tipf~  387 (425)
T KOG2695|consen  377 SGHLLCTIPFP  387 (425)
T ss_pred             cCceeeccCCC
Confidence            99998887643

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.84  E-value=2.9e-07  Score=82.40  Aligned_cols=182  Identities=18%  Similarity=0.266  Sum_probs=129.5

Q ss_pred             CCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCe
Q 024372           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE   95 (268)
Q Consensus        16 ~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~   95 (268)
                      ...+.+++++     +..|+-|+.+|.+.+.+.. |.. .+.-.|+..      ..+|.+++|||.||+|.|-.+.+.+.
T Consensus        39 ~D~is~~av~-----~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~  105 (846)
T KOG2066|consen   39 NDAISCCAVH-----DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDE  105 (846)
T ss_pred             hhHHHHHHhh-----cceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcc
Confidence            3456666664     4689999999999988754 322 333345444      56799999999999999999999999


Q ss_pred             eeeeccCCeEEEEEECCC-----CCEEEEeeCCCeEEEEECCC-CCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCe
Q 024372           96 KHSFEHKHIVRACAFSED-----THLLLTGGFEKILRIFDLNR-PDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG  169 (268)
Q Consensus        96 ~~~~~~~~~v~~v~~~~~-----~~~l~s~~~d~~i~~~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~  169 (268)
                      ...+..+.++.+++++|+     .+.+++|+..| +.++.=+= +.........-.|+|.++.|.   +++++=.++ -.
T Consensus       106 ~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~---g~lIAWand-~G  180 (846)
T KOG2066|consen  106 ITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR---GNLIAWAND-DG  180 (846)
T ss_pred             ceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec---CcEEEEecC-CC
Confidence            898888999999999997     57889999888 66664110 011111233456899999995   346665555 46


Q ss_pred             EEEEeCCCCceEEeecCCC-------CEEEEEECCCCcEEEEeCCCeEEEEeCC
Q 024372          170 VRLWDARSGKIVQTLETKS-------PVTSAEVSRDGRYITTADGSSVKFWDAN  216 (268)
Q Consensus       170 i~iwd~~~~~~~~~~~~~~-------~v~~~~~s~~g~~l~~~~~~~v~~wd~~  216 (268)
                      |+++|+.+++.+..++...       ....+.|.++.+++ .|-+.+|++..++
T Consensus       181 v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LV-IGW~d~v~i~~I~  233 (846)
T KOG2066|consen  181 VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLV-IGWGDSVKICSIK  233 (846)
T ss_pred             cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEE-EecCCeEEEEEEe
Confidence            9999999988877665321       23467777776655 5555588888876

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.84  E-value=2.3e-08  Score=88.55  Aligned_cols=207  Identities=15%  Similarity=0.219  Sum_probs=128.7

Q ss_pred             ecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC-eEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEE
Q 024372            8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD-WIGTFEGHKGAVWSCCLDANALFSASGSADFTAK   86 (268)
Q Consensus         8 ~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~-~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~   86 (268)
                      .-++++||+..|+++.|+|..||  .||+++.|..+..||.++.. .+..+..-......|.|+.....+...+....|+
T Consensus       106 Ief~lhghsraitd~n~~~q~pd--Vlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~  183 (1081)
T KOG0309|consen  106 IEFVLHGHSRAITDINFNPQHPD--VLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIF  183 (1081)
T ss_pred             eEEEEecCccceeccccCCCCCc--ceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceE
Confidence            34678999999999999998887  89999999999999998864 4555544334456788886555445556778899


Q ss_pred             EEeCCCCC-eeeee-ccCCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCC-----
Q 024372           87 LWDALTGD-EKHSF-EHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ-----  158 (268)
Q Consensus        87 iw~~~~~~-~~~~~-~~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----  158 (268)
                      +||..-+. ++..+ .|-..|+.+.|+. --..+.+.+.|++++.||................++..-.+.|-+.     
T Consensus       184 vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~m  263 (1081)
T KOG0309|consen  184 VWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIM  263 (1081)
T ss_pred             EEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEec
Confidence            99987554 33333 2555677777765 2345678899999999997643222211111223333333333221     


Q ss_pred             -----cEEEEeeCCCeEEEEeCCCC-ceEEeecCCCC-EEEEEE--------CC---CCcEEEEeCCCeEEEEeCC
Q 024372          159 -----TILSSCTDSGGVRLWDARSG-KIVQTLETKSP-VTSAEV--------SR---DGRYITTADGSSVKFWDAN  216 (268)
Q Consensus       159 -----~~~~~~~~d~~i~iwd~~~~-~~~~~~~~~~~-v~~~~~--------s~---~g~~l~~~~~~~v~~wd~~  216 (268)
                           +++---.-++....|+..++ +.+++|.+|.. |....|        ..   +-.++.=+-|.++|+|.+.
T Consensus       264 p~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~  339 (1081)
T KOG0309|consen  264 PMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID  339 (1081)
T ss_pred             cccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence                 11111111234455666543 67888876643 322222        22   2233444788999999874

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.83  E-value=3.2e-05  Score=62.69  Aligned_cols=216  Identities=13%  Similarity=0.151  Sum_probs=137.4

Q ss_pred             eEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEec-CCCcEEEEeeCCCcEEEEeCCCCCeeeee
Q 024372           21 DLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLD-ANALFSASGSADFTAKLWDALTGDEKHSF   99 (268)
Q Consensus        21 ~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~-~~~~~l~s~s~D~~v~iw~~~~~~~~~~~   99 (268)
                      +..|.|  .+|.++.+-...+.|.-|+..+++.. .+....  ...+.+. +++.++++. .+ .+.++|..+++.....
T Consensus         4 gp~~d~--~~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~~--~~G~~~~~~~g~l~v~~-~~-~~~~~d~~~g~~~~~~   76 (246)
T PF08450_consen    4 GPVWDP--RDGRLYWVDIPGGRIYRVDPDTGEVE-VIDLPG--PNGMAFDRPDGRLYVAD-SG-GIAVVDPDTGKVTVLA   76 (246)
T ss_dssp             EEEEET--TTTEEEEEETTTTEEEEEETTTTEEE-EEESSS--EEEEEEECTTSEEEEEE-TT-CEEEEETTTTEEEEEE
T ss_pred             ceEEEC--CCCEEEEEEcCCCEEEEEECCCCeEE-EEecCC--CceEEEEccCCEEEEEE-cC-ceEEEecCCCcEEEEe
Confidence            356664  26778888888889999999887643 232222  5566676 676665554 33 4455598887654443


Q ss_pred             cc------CCeEEEEEECCCCCEEEEeeCC--------CeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEee
Q 024372          100 EH------KHIVRACAFSEDTHLLLTGGFE--------KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT  165 (268)
Q Consensus       100 ~~------~~~v~~v~~~~~~~~l~s~~~d--------~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  165 (268)
                      ..      ....+.+++.++|++.++....        +.+..++.. ++  ...........+.++|+|++..++++-+
T Consensus        77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~--~~~~~~~~~~pNGi~~s~dg~~lyv~ds  153 (246)
T PF08450_consen   77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK--VTVVADGLGFPNGIAFSPDGKTLYVADS  153 (246)
T ss_dssp             EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE--EEEEEEEESSEEEEEEETTSSEEEEEET
T ss_pred             eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce--EEEEecCcccccceEECCcchheeeccc
Confidence            32      2357789999999977765433        446666654 22  2222222345678999999988877777


Q ss_pred             CCCeEEEEeCCCC-c-e-----EEeecCC-CCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeCC-CCceeeEE
Q 024372          166 DSGGVRLWDARSG-K-I-----VQTLETK-SPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMP-CNTESASL  235 (268)
Q Consensus       166 ~d~~i~iwd~~~~-~-~-----~~~~~~~-~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~-~~~~~~~~  235 (268)
                      ..+.|..+|+... . .     +..+... ...-.+++.++|++.++. ..+.|.++|.+ ++.+..+..+ ..+..++|
T Consensus       154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~f  232 (246)
T PF08450_consen  154 FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAF  232 (246)
T ss_dssp             TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred             ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence            7789999998532 2 1     1222222 237789999999987764 57899999988 7778888877 45666676


Q ss_pred             c-CCCCCEEEecc
Q 024372          236 E-PKLGNIFIAGG  247 (268)
Q Consensus       236 ~-~~~~~~~~~gs  247 (268)
                      - ++.+.+|+|.+
T Consensus       233 gg~~~~~L~vTta  245 (246)
T PF08450_consen  233 GGPDGKTLYVTTA  245 (246)
T ss_dssp             ESTTSSEEEEEEB
T ss_pred             ECCCCCEEEEEeC
Confidence            4 33456666643

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.81  E-value=8.4e-06  Score=71.18  Aligned_cols=191  Identities=13%  Similarity=0.047  Sum_probs=117.2

Q ss_pred             cEEEEEecCCCcE-EEEeeC---CCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEE-eeCC--CeEEEEECCCCC
Q 024372           63 AVWSCCLDANALF-SASGSA---DFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLT-GGFE--KILRIFDLNRPD  135 (268)
Q Consensus        63 ~V~~~~~~~~~~~-l~s~s~---D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s-~~~d--~~i~~~d~~~~~  135 (268)
                      .+..-.|+|+++. ++..+.   +..|.++|+.+++.......+.......|+||++.++. .+.+  ..|.++|+..+.
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~  268 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT  268 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence            6778899999974 553332   45788889988877665555555666789999986654 3333  467777876543


Q ss_pred             CCCeEecCCcccEEEEEEeCCCCcEEEEeeCCC--eEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEE-eC-C----
Q 024372          136 APPREVGNSSGSIRTVAWLHSDQTILSSCTDSG--GVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-AD-G----  207 (268)
Q Consensus       136 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~-~----  207 (268)
                        .+.+....+....-.|+|++..++.++...+  .|.+.|+.+++..+.... ... ...|+|||++++- +. .    
T Consensus       269 --~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~-~~~~SPDG~~Ia~~~~~~~~~~  344 (419)
T PRK04043        269 --LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN-NSSVSTYKNYIVYSSRETNNEF  344 (419)
T ss_pred             --EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc-CceECCCCCEEEEEEcCCCccc
Confidence              2333333322334579999988766654433  688889988876443322 112 2489999998763 32 1    


Q ss_pred             ----CeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccC---CCeEEEEECCC
Q 024372          208 ----SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE---DMWVHVFDFHT  259 (268)
Q Consensus       208 ----~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~---d~~i~~wd~~~  259 (268)
                          ..|.+.|+...... .+..........++| +|++++-.+.   ...+.+.++.-
T Consensus       345 ~~~~~~I~v~d~~~g~~~-~LT~~~~~~~p~~SP-DG~~I~f~~~~~~~~~L~~~~l~g  401 (419)
T PRK04043        345 GKNTFNLYLISTNSDYIR-RLTANGVNQFPRFSS-DGGSIMFIKYLGNQSALGIIRLNY  401 (419)
T ss_pred             CCCCcEEEEEECCCCCeE-ECCCCCCcCCeEECC-CCCEEEEEEccCCcEEEEEEecCC
Confidence                25777888765432 222222233567777 5776664432   22477777753

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.77  E-value=1.6e-07  Score=78.87  Aligned_cols=204  Identities=20%  Similarity=0.192  Sum_probs=136.5

Q ss_pred             ccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeee----eeccCCeEEEEEECCCCCEEEEeeC-CCeEEEEECCCC
Q 024372           60 HKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKH----SFEHKHIVRACAFSEDTHLLLTGGF-EKILRIFDLNRP  134 (268)
Q Consensus        60 h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~----~~~~~~~v~~v~~~~~~~~l~s~~~-d~~i~~~d~~~~  134 (268)
                      |.+.|.-|..+ ...++.+++.||.++.|.-..-..+.    ...|...+.+++.+.++.++.|++. |..+|++|++..
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~   86 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF   86 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence            66766655433 45788999999999999865433222    2246667788888889999999887 999999998754


Q ss_pred             CCCCeE-ecCCcccEEEEEEeCCCC--cEEEEeeCCCeEEEEeCCCCce-EEeec--CCCCEEEEEECCCCcEEEEeC-C
Q 024372          135 DAPPRE-VGNSSGSIRTVAWLHSDQ--TILSSCTDSGGVRLWDARSGKI-VQTLE--TKSPVTSAEVSRDGRYITTAD-G  207 (268)
Q Consensus       135 ~~~~~~-~~~~~~~v~~~~~~~~~~--~~~~~~~~d~~i~iwd~~~~~~-~~~~~--~~~~v~~~~~s~~g~~l~~~~-~  207 (268)
                      ....-. ..-..+.+.. ..++.+.  .+.++..+++.+.++|-+..-| ...+.  +..+|..+.+.|-+.-+++.+ +
T Consensus        87 DminmiKL~~lPg~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~  165 (558)
T KOG0882|consen   87 DMINMIKLVDLPGFAEW-VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDIS  165 (558)
T ss_pred             chhhhcccccCCCceEE-ecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecccc
Confidence            322111 1111111111 1223221  4566667779999999876553 22222  457899999999998877765 6


Q ss_pred             CeEEEEeCCC-ce-----eeeEE-------e---CCCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEeec
Q 024372          208 SSVKFWDANH-FG-----LVKGY-------N---MPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       208 ~~v~~wd~~~-~~-----~~~~~-------~---~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~~  266 (268)
                      |.|..|.... +.     ..-.+       .   .+..+.++.+++ ++..+.+-+.|..|+++++++|+.+.+.
T Consensus       166 gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtGklvqei  239 (558)
T KOG0882|consen  166 GMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTGKLVQEI  239 (558)
T ss_pred             ceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcc-ccCcccccCcccEEEEEEeccchhhhhh
Confidence            8999998862 11     11111       1   123345667777 6888999889999999999999987764

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.77  E-value=2.6e-06  Score=72.38  Aligned_cols=168  Identities=20%  Similarity=0.264  Sum_probs=123.8

Q ss_pred             CCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCC-cEEEEeCCCCCeeeeeccCCeEEEE
Q 024372           30 DGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADF-TAKLWDALTGDEKHSFEHKHIVRAC  108 (268)
Q Consensus        30 dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~-~v~iw~~~~~~~~~~~~~~~~v~~v  108 (268)
                      +|.+++..|+.+. .|.+...+-.+.  -+|.+.|+-..+..++.-++-|-.|| .+-++|..+++..+....-..|..+
T Consensus       331 ~Gd~ia~VSRGka-Fi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av  407 (668)
T COG4946         331 NGDYIALVSRGKA-FIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAV  407 (668)
T ss_pred             CCcEEEEEecCcE-EEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEE
Confidence            6889998888654 444444443332  25778888888877777778888898 8999999998877777677789999


Q ss_pred             EECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCC----eEEEEeCCCCceEEee
Q 024372          109 AFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG----GVRLWDARSGKIVQTL  184 (268)
Q Consensus       109 ~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~----~i~iwd~~~~~~~~~~  184 (268)
                      ..+++|+.++.+....++-+.|+.++...... ....+.|+.+.|+|+..++ +-+..+|    .|+++|...++.....
T Consensus       408 ~vs~dGK~~vvaNdr~el~vididngnv~~id-kS~~~lItdf~~~~nsr~i-AYafP~gy~tq~Iklydm~~~Kiy~vT  485 (668)
T COG4946         408 KVSPDGKKVVVANDRFELWVIDIDNGNVRLID-KSEYGLITDFDWHPNSRWI-AYAFPEGYYTQSIKLYDMDGGKIYDVT  485 (668)
T ss_pred             EEcCCCcEEEEEcCceEEEEEEecCCCeeEec-ccccceeEEEEEcCCceeE-EEecCcceeeeeEEEEecCCCeEEEec
Confidence            99999999999988888888899876543222 2345678999999877654 4444444    6999999988876654


Q ss_pred             cCCCCEEEEEECCCCcEE
Q 024372          185 ETKSPVTSAEVSRDGRYI  202 (268)
Q Consensus       185 ~~~~~v~~~~~s~~g~~l  202 (268)
                      ...+-=.+-+|.|++++|
T Consensus       486 T~ta~DfsPaFD~d~ryL  503 (668)
T COG4946         486 TPTAYDFSPAFDPDGRYL  503 (668)
T ss_pred             CCcccccCcccCCCCcEE
Confidence            433333456788999876

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.77  E-value=2.6e-06  Score=76.33  Aligned_cols=235  Identities=14%  Similarity=0.033  Sum_probs=158.6

Q ss_pred             CeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCC------------CcEEEEeeCCCcE
Q 024372           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN------------ALFSASGSADFTA   85 (268)
Q Consensus        18 ~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~------------~~~l~s~s~D~~v   85 (268)
                      .-.+++|+|   .| ++|=|+ ...|.+-|..+.+++..++.|+..|..+.|.|-            ..++|++...|.|
T Consensus        17 N~~A~Dw~~---~G-LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI   91 (1062)
T KOG1912|consen   17 NRNAADWSP---SG-LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI   91 (1062)
T ss_pred             cccccccCc---cc-eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence            366888884   55 555444 455678899999999999999999999998753            1356778788999


Q ss_pred             EEEeCCCCCeeeeec-cCCeEEEEEECC---CC-CEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCC-c
Q 024372           86 KLWDALTGDEKHSFE-HKHIVRACAFSE---DT-HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ-T  159 (268)
Q Consensus        86 ~iw~~~~~~~~~~~~-~~~~v~~v~~~~---~~-~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~  159 (268)
                      .+||...+..+..++ +.+++..++|-+   +. .+|++-.....+.+|+..+++........+ ....|+.+.|-+. +
T Consensus        92 il~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~-~iLs~f~~DPfd~rh  170 (1062)
T KOG1912|consen   92 ILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSH-EILSCFRVDPFDSRH  170 (1062)
T ss_pred             EEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCC-cceeeeeeCCCCcce
Confidence            999998887777776 456788888755   33 567776777899999988776544443333 2456677766443 4


Q ss_pred             EEEEeeCCCeEEEEeCC-C------CceEEeecCCC------------------C--------EEEEEECCCCcE-EEEe
Q 024372          160 ILSSCTDSGGVRLWDAR-S------GKIVQTLETKS------------------P--------VTSAEVSRDGRY-ITTA  205 (268)
Q Consensus       160 ~~~~~~~d~~i~iwd~~-~------~~~~~~~~~~~------------------~--------v~~~~~s~~g~~-l~~~  205 (268)
                      +...++. |.+.+-+.- .      ++.++.-..+.                  +        ....+|+|.-+- +...
T Consensus       171 ~~~l~s~-g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~  249 (1062)
T KOG1912|consen  171 FCVLGSK-GFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFIT  249 (1062)
T ss_pred             EEEEccC-ceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEE
Confidence            5555554 777776542 1      23333221110                  0        123456787644 4456


Q ss_pred             CCCeEEEEeCCCceeeeEEeCCCCce-eeEEcCC-CCCEEEeccCCCeEEEEECCC
Q 024372          206 DGSSVKFWDANHFGLVKGYNMPCNTE-SASLEPK-LGNIFIAGGEDMWVHVFDFHT  259 (268)
Q Consensus       206 ~~~~v~~wd~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~gs~d~~i~~wd~~~  259 (268)
                      -.+.+.++|++...++....++.+.. -+.+.|+ ..+.+.+.=.||.+-+|--+.
T Consensus       250 ~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  250 FPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             eccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence            67899999999888888887766532 2333443 356788888999999997654

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.77  E-value=3.2e-05  Score=63.67  Aligned_cols=217  Identities=12%  Similarity=0.152  Sum_probs=136.1

Q ss_pred             CCCeEEeeCCC--CCeE-EEeeCccCcEEEEEecCCCcEEEEeeCC---CcEEEEeCCCC--Ceeeee---ccCCeEEEE
Q 024372           40 DSSPMLRNGET--GDWI-GTFEGHKGAVWSCCLDANALFSASGSAD---FTAKLWDALTG--DEKHSF---EHKHIVRAC  108 (268)
Q Consensus        40 d~~i~iw~~~~--~~~~-~~~~~h~~~V~~~~~~~~~~~l~s~s~D---~~v~iw~~~~~--~~~~~~---~~~~~v~~v  108 (268)
                      ++-|.+|++.+  |++. -.+-.+.+...-++++|++++|.++..+   +.|-.+.+...  .....-   ....+-..+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            56788887663  4321 1223456677788999999998887654   66776666543  321111   123344678


Q ss_pred             EECCCCCEEEEeeCC-CeEEEEECCC-CCCCCe-EecCCccc----------EEEEEEeCCCCcEEEEeeCCCeEEEEeC
Q 024372          109 AFSEDTHLLLTGGFE-KILRIFDLNR-PDAPPR-EVGNSSGS----------IRTVAWLHSDQTILSSCTDSGGVRLWDA  175 (268)
Q Consensus       109 ~~~~~~~~l~s~~~d-~~i~~~d~~~-~~~~~~-~~~~~~~~----------v~~~~~~~~~~~~~~~~~~d~~i~iwd~  175 (268)
                      ++++++++|+++.+. +.|.++-++. +..... ....|.+.          +....+.|++..+++..-.-..|.+|++
T Consensus        95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~  174 (346)
T COG2706          95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL  174 (346)
T ss_pred             EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence            999999999998754 7788887754 221111 11122333          6667778888777766544468999999


Q ss_pred             CCCceEE----eecCCCCEEEEEECCCCcEEE--EeCCCeEEEEeCCCc----eeeeEEeC-C------CCceeeEEcCC
Q 024372          176 RSGKIVQ----TLETKSPVTSAEVSRDGRYIT--TADGSSVKFWDANHF----GLVKGYNM-P------CNTESASLEPK  238 (268)
Q Consensus       176 ~~~~~~~----~~~~~~~v~~~~~s~~g~~l~--~~~~~~v~~wd~~~~----~~~~~~~~-~------~~~~~~~~~~~  238 (268)
                      ..|....    .++......-+.|+|+++++-  ..=+++|.+|.....    +.++.+.. +      .....+.+++ 
T Consensus       175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~-  253 (346)
T COG2706         175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP-  253 (346)
T ss_pred             ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC-
Confidence            8765432    234455678999999999764  334789999987652    33443321 2      2223455566 


Q ss_pred             CCCEEEecc--CCCeEEEEECC
Q 024372          239 LGNIFIAGG--EDMWVHVFDFH  258 (268)
Q Consensus       239 ~~~~~~~gs--~d~~i~~wd~~  258 (268)
                      +|++|+++-  .| .|-+|.+.
T Consensus       254 dGrFLYasNRg~d-sI~~f~V~  274 (346)
T COG2706         254 DGRFLYASNRGHD-SIAVFSVD  274 (346)
T ss_pred             CCCEEEEecCCCC-eEEEEEEc
Confidence            699888763  34 57777764

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.76  E-value=6.6e-06  Score=67.42  Aligned_cols=182  Identities=19%  Similarity=0.259  Sum_probs=120.9

Q ss_pred             eEEEecCCCCCcEEEEEeC-----CCCeEEeeCC-CCCeEEEeeCccCcEEEEEecCCCcEEEEe--eC-----CCcEEE
Q 024372           21 DLFYSPITPDGFFLVSASK-----DSSPMLRNGE-TGDWIGTFEGHKGAVWSCCLDANALFSASG--SA-----DFTAKL   87 (268)
Q Consensus        21 ~~~f~~~~~dg~~l~s~s~-----d~~i~iw~~~-~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~--s~-----D~~v~i   87 (268)
                      --.|+   +||++|.+.-+     .|.|-|||.. ..+.+.+|..|.=.=..+.+.||+..|+-+  +-     .|..++
T Consensus        55 Hg~fs---~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kL  131 (305)
T PF07433_consen   55 HGVFS---PDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKL  131 (305)
T ss_pred             CEEEc---CCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceec
Confidence            35676   59999998844     4577899998 667888998775555667789999655433  21     133333


Q ss_pred             -----------EeCCCCCeeeeec-----cCCeEEEEEECCCCCEEEEeeCCCe-------EEEEECCCCCCCCeEe---
Q 024372           88 -----------WDALTGDEKHSFE-----HKHIVRACAFSEDTHLLLTGGFEKI-------LRIFDLNRPDAPPREV---  141 (268)
Q Consensus        88 -----------w~~~~~~~~~~~~-----~~~~v~~v~~~~~~~~l~s~~~d~~-------i~~~d~~~~~~~~~~~---  141 (268)
                                 -|..++..+....     |+..++.+++.++|..++..-+.+.       +-++....  . .+..   
T Consensus       132 Nl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~-~~~~~~p  208 (305)
T PF07433_consen  132 NLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--A-LRLLPAP  208 (305)
T ss_pred             ChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--c-ceeccCC
Confidence                       3344455444321     4557999999999987776655544       22232211  0 1111   


Q ss_pred             ----cCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEeCCCeE
Q 024372          142 ----GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSV  210 (268)
Q Consensus       142 ----~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v  210 (268)
                          ..-.+.+-+|+++.++..+++++-..+.+.+||..+++.+..... ..+..++..+++ |++++..+.+
T Consensus       209 ~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l-~D~cGva~~~~~-f~~ssG~G~~  279 (305)
T PF07433_consen  209 EEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL-PDACGVAPTDDG-FLVSSGQGQL  279 (305)
T ss_pred             hHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc-CceeeeeecCCc-eEEeCCCccE
Confidence                123467889999998888888888888999999999998886654 346677888888 6666554443

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.73  E-value=2.4e-05  Score=62.64  Aligned_cols=221  Identities=13%  Similarity=0.121  Sum_probs=124.1

Q ss_pred             CCCCcEEEEEeCCCCeEEeeCCCC--CeEEEeeCcc---CcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeec--
Q 024372           28 TPDGFFLVSASKDSSPMLRNGETG--DWIGTFEGHK---GAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE--  100 (268)
Q Consensus        28 ~~dg~~l~s~s~d~~i~iw~~~~~--~~~~~~~~h~---~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~--  100 (268)
                      +++|+.|| .-.|..|.|...++.  ..+++..-++   .+=+.++|+||+.+||.+...|+|+++|+..... ..++  
T Consensus         6 ~~~Gk~lA-i~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f~I~p~   83 (282)
T PF15492_consen    6 SSDGKLLA-ILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-FVIPPA   83 (282)
T ss_pred             cCCCcEEE-EEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccccee-EEcCcc
Confidence            35887665 678888888766653  2334333333   3468899999999999999999999999976443 2222  


Q ss_pred             ------cCCeEEEEEECCC------CCEEEEeeCCCeEEEEECCCCC----CCCeEe---cCCcccEEEEEEeCCCCcEE
Q 024372          101 ------HKHIVRACAFSED------THLLLTGGFEKILRIFDLNRPD----APPREV---GNSSGSIRTVAWLHSDQTIL  161 (268)
Q Consensus       101 ------~~~~v~~v~~~~~------~~~l~s~~~d~~i~~~d~~~~~----~~~~~~---~~~~~~v~~~~~~~~~~~~~  161 (268)
                            ....|-.+.|-+.      ...|+.-.++|.++-|-+..+.    .....+   .+....|.++.|.|....++
T Consensus        84 ~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLl  163 (282)
T PF15492_consen   84 MSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLL  163 (282)
T ss_pred             cccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEE
Confidence                  1234555555331      2346666788888877652211    111111   12345789999998887777


Q ss_pred             EEeeCCCeEEEEeCCC-CceEEeecCCCCEEEEEECCCCcEEEEeCCC------eEEEEeCCCceeeeE-EeCCCCceee
Q 024372          162 SSCTDSGGVRLWDARS-GKIVQTLETKSPVTSAEVSRDGRYITTADGS------SVKFWDANHFGLVKG-YNMPCNTESA  233 (268)
Q Consensus       162 ~~~~~d~~i~iwd~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~------~v~~wd~~~~~~~~~-~~~~~~~~~~  233 (268)
                      ++|.....-..+-... |-        ....-+.-.|..+.+.+.+++      +-.+|.+-+.+.... .+....+...
T Consensus       164 VgG~~~~~~~~s~a~~~GL--------taWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~km  235 (282)
T PF15492_consen  164 VGGCEQNQDGMSKASSCGL--------TAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKM  235 (282)
T ss_pred             EeccCCCCCccccccccCc--------eEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEE
Confidence            7766544211111100 10        001111123333333332221      123343332211111 1112345566


Q ss_pred             EEcCCCCCEEEeccCCCeEEEEECCC
Q 024372          234 SLEPKLGNIFIAGGEDMWVHVFDFHT  259 (268)
Q Consensus       234 ~~~~~~~~~~~~gs~d~~i~~wd~~~  259 (268)
                      .++| +|..||+...+|.|.+|++-+
T Consensus       236 SlSP-dg~~La~ih~sG~lsLW~iPs  260 (282)
T PF15492_consen  236 SLSP-DGSLLACIHFSGSLSLWEIPS  260 (282)
T ss_pred             EECC-CCCEEEEEEcCCeEEEEecCc
Confidence            7777 699999999999999999854

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.72  E-value=8.5e-06  Score=77.51  Aligned_cols=233  Identities=12%  Similarity=0.196  Sum_probs=146.2

Q ss_pred             CCCeeeEEEecCCCCCcEEEEEeCCCCeEEe----eCCCC--CeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEe
Q 024372           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLR----NGETG--DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (268)
Q Consensus        16 ~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw----~~~~~--~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~   89 (268)
                      .+.|.++.|-+   +...|..+..+|.|.+.    +..+.  |.++.+   ...|.+.+|+||+..++-...++++.+-.
T Consensus        75 ~~~ivs~~yl~---d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v---d~GI~a~~WSPD~Ella~vT~~~~l~~mt  148 (928)
T PF04762_consen   75 NDKIVSFQYLA---DSESLCIALASGDIILVREDPDPDEDEIEIVGSV---DSGILAASWSPDEELLALVTGEGNLLLMT  148 (928)
T ss_pred             CCcEEEEEecc---CCCcEEEEECCceEEEEEccCCCCCceeEEEEEE---cCcEEEEEECCCcCEEEEEeCCCEEEEEe
Confidence            45788899975   67789999999999988    54443  445554   46899999999999988777777777654


Q ss_pred             CC----C---------C----------Ceeeee-------------------------ccCCeEEEEEECCCCCEEEEee
Q 024372           90 AL----T---------G----------DEKHSF-------------------------EHKHIVRACAFSEDTHLLLTGG  121 (268)
Q Consensus        90 ~~----~---------~----------~~~~~~-------------------------~~~~~v~~v~~~~~~~~l~s~~  121 (268)
                      ..    .         +          +.-..|                         +..+.-..++|-.||+++|+.+
T Consensus       149 ~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss  228 (928)
T PF04762_consen  149 RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSS  228 (928)
T ss_pred             ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEE
Confidence            20    0         0          000000                         0011223578999999999876


Q ss_pred             C------CCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeC--CCeEEEEeCCCCceEEeec-----CCC
Q 024372          122 F------EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTD--SGGVRLWDARSGKIVQTLE-----TKS  188 (268)
Q Consensus       122 ~------d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--d~~i~iwd~~~~~~~~~~~-----~~~  188 (268)
                      -      -+.+|+|+ +.+.. ........+--.+++|-|.|..++++-..  ...|.+|. |.|-.-..|.     ...
T Consensus       229 ~~~~~~~~R~iRVy~-ReG~L-~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~  305 (928)
T PF04762_consen  229 VEPETGSRRVIRVYS-REGEL-QSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEE  305 (928)
T ss_pred             EEcCCCceeEEEEEC-CCceE-EeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCc
Confidence            4      36799998 33332 12222233444578999887544433321  13455564 3332222222     234


Q ss_pred             CEEEEEECCCCcEEEEeCCCeEEEEeCCCceee--eEEeCCC--CceeeEEcCCCCCEEEeccCCCeEEEEEC
Q 024372          189 PVTSAEVSRDGRYITTADGSSVKFWDANHFGLV--KGYNMPC--NTESASLEPKLGNIFIAGGEDMWVHVFDF  257 (268)
Q Consensus       189 ~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~gs~d~~i~~wd~  257 (268)
                      .+..+.|++|+..|+..-...|.+|-..+|.--  +.+..+.  ....+.|++.....|.....++.+..+++
T Consensus       306 ~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~  378 (928)
T PF04762_consen  306 KVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDF  378 (928)
T ss_pred             eeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence            689999999999998765556999999988642  2333322  23447888877777777777666655543

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.71  E-value=8.4e-06  Score=73.86  Aligned_cols=195  Identities=15%  Similarity=0.154  Sum_probs=130.6

Q ss_pred             CCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCc-EEEEEecCCCcEEEEeeCCC-----cEEEEeCCCC------Cee
Q 024372           29 PDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGA-VWSCCLDANALFSASGSADF-----TAKLWDALTG------DEK   96 (268)
Q Consensus        29 ~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~-V~~~~~~~~~~~l~s~s~D~-----~v~iw~~~~~------~~~   96 (268)
                      +.+..++.|+++|.|.+.+.. -+.++.|..+... |..+....+..+|++.+.|.     .+++|+++..      ++.
T Consensus        33 s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~  111 (933)
T KOG2114|consen   33 SSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCL  111 (933)
T ss_pred             CCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCccee
Confidence            467789999999999887643 3455778777766 55444444446788877664     4899998643      222


Q ss_pred             ---eeec-----cCCeEEEEEECCCCCEEEEeeCCCeEEEEE--C-CCCCCCCeEecCCcccEEEEEEeCCCCcEEEEee
Q 024372           97 ---HSFE-----HKHIVRACAFSEDTHLLLTGGFEKILRIFD--L-NRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT  165 (268)
Q Consensus        97 ---~~~~-----~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d--~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  165 (268)
                         +.++     .+.++.+++.+.+-+.++.|-.+|.|..+.  + +............+++|+.+.+..++...+-+.+
T Consensus       112 ~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~T  191 (933)
T KOG2114|consen  112 YEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVAT  191 (933)
T ss_pred             eeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEe
Confidence               2222     245688899999999999999999998884  2 1212222333455679999999877776333334


Q ss_pred             CCCeEEEEeCCCCce-EEeecCC-CCEEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEe
Q 024372          166 DSGGVRLWDARSGKI-VQTLETK-SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYN  225 (268)
Q Consensus       166 ~d~~i~iwd~~~~~~-~~~~~~~-~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~  225 (268)
                      . ..|.+|.+....+ ...+..+ .+.+|..+++.-.-++++.+..+.+||....++--+|.
T Consensus       192 t-~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  192 T-EQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCFAFE  252 (933)
T ss_pred             c-ceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCcceeeeec
Confidence            4 6799999984332 3445543 45888888877655667777789999986544333343

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.71  E-value=4e-06  Score=67.41  Aligned_cols=187  Identities=18%  Similarity=0.114  Sum_probs=110.7

Q ss_pred             CCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeee-ccC----Ce
Q 024372           30 DGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF-EHK----HI  104 (268)
Q Consensus        30 dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~-~~~----~~  104 (268)
                      ++.++++++.++.+..+|..+|+.+-++.. .+.+...-...++ .++.+..|+.++.+|..+++..... ...    ..
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~-~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~  112 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVVDGG-RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGV  112 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEEETT-EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCST
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeeeccc-ccccccceeeeEecccCCcceeeeecccccccccc
Confidence            456788889999999999999997766653 1221111112233 3444557889999999999987774 211    11


Q ss_pred             EEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCC-cc--------cEEEEEEeCCCCcEEEEeeCCCe-EEEEe
Q 024372          105 VRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNS-SG--------SIRTVAWLHSDQTILSSCTDSGG-VRLWD  174 (268)
Q Consensus       105 v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~-~~--------~v~~~~~~~~~~~~~~~~~~d~~-i~iwd  174 (268)
                      .........+..++.+..++.+..+|+.+++......... ..        ....-....++ .++++.. ++. +.+ |
T Consensus       113 ~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~-~g~~~~~-d  189 (238)
T PF13360_consen  113 RSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSG-DGRVVAV-D  189 (238)
T ss_dssp             B--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECC-TSSEEEE-E
T ss_pred             ccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcC-CCeEEEE-E
Confidence            1111222236778888889999999988775433332211 11        11122222333 5555544 464 666 9


Q ss_pred             CCCCceEEeecCCCCEEEEEECCCCcEEEEeCCCeEEEEeCCCceeee
Q 024372          175 ARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVK  222 (268)
Q Consensus       175 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~  222 (268)
                      +++++.+.... ......+....++.+++.+.++.|..||+++++.+-
T Consensus       190 ~~tg~~~w~~~-~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W  236 (238)
T PF13360_consen  190 LATGEKLWSKP-ISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGKVVW  236 (238)
T ss_dssp             TTTTEEEEEEC-SS-ECECEECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred             CCCCCEEEEec-CCCccCCceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence            99999765333 223333233444444445578999999999987654

...

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.70  E-value=6.2e-07  Score=79.57  Aligned_cols=227  Identities=11%  Similarity=0.090  Sum_probs=137.7

Q ss_pred             CCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC---------------eEEEeeCccCcEEEEEecCCCcEEEEee
Q 024372           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD---------------WIGTFEGHKGAVWSCCLDANALFSASGS   80 (268)
Q Consensus        16 ~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~---------------~~~~~~~h~~~V~~~~~~~~~~~l~s~s   80 (268)
                      .....+++|+-   ...|+|+|+.||.+++..+.+..               --+++.||++.|.-+.|..+.+.|-|..
T Consensus        14 nvkL~c~~WNk---e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSD   90 (1189)
T KOG2041|consen   14 NVKLHCAEWNK---ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSD   90 (1189)
T ss_pred             CceEEEEEEcc---cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccC
Confidence            44567899984   45599999999999998554321               1257789999999999999888888888


Q ss_pred             CCCcEEEEeCCCCCeee---eeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCC
Q 024372           81 ADFTAKLWDALTGDEKH---SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSD  157 (268)
Q Consensus        81 ~D~~v~iw~~~~~~~~~---~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~  157 (268)
                      .+|.|.+|-+..+.=..   .-..++.|.+++|+.+|..++..-.||.+.+=.++..+.--....  ......+.|+++.
T Consensus        91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLk--g~~l~hv~ws~D~  168 (1189)
T KOG2041|consen   91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELK--GQLLAHVLWSEDL  168 (1189)
T ss_pred             CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcc--hheccceeecccH
Confidence            99999999986654211   123566789999999999888888888776655432111001111  1123457788776


Q ss_pred             CcEEEEeeCCCeEEEEeCCCCc-------eEEe----ec-CCCCEEEEEEC--------CCCcEEE-EeCCCeEEEEeCC
Q 024372          158 QTILSSCTDSGGVRLWDARSGK-------IVQT----LE-TKSPVTSAEVS--------RDGRYIT-TADGSSVKFWDAN  216 (268)
Q Consensus       158 ~~~~~~~~~d~~i~iwd~~~~~-------~~~~----~~-~~~~v~~~~~s--------~~g~~l~-~~~~~~v~~wd~~  216 (268)
                      ..++. +-..|.+.++|-+..-       |.-.    +. ....+..+.|.        |+.-.++ +=+.|.+.+-.-+
T Consensus       169 ~~~Lf-~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~e  247 (1189)
T KOG2041|consen  169 EQALF-KKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSE  247 (1189)
T ss_pred             HHHHh-hhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhc
Confidence            54443 3455889999875321       1000    10 01123344442        3443443 3345555554433


Q ss_pred             CceeeeEEeCCCCceeeEEcCCCCCEEEeccCC
Q 024372          217 HFGLVKGYNMPCNTESASLEPKLGNIFIAGGED  249 (268)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d  249 (268)
                      +....-.+..+-.....-|.+ .|..|+.+|.|
T Consensus       248 ND~~Pvv~dtgm~~vgakWnh-~G~vLAvcG~~  279 (1189)
T KOG2041|consen  248 NDPEPVVVDTGMKIVGAKWNH-NGAVLAVCGND  279 (1189)
T ss_pred             CCCCCeEEecccEeecceecC-CCcEEEEccCc
Confidence            322222333333334445555 68888887764

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.70  E-value=6.1e-08  Score=54.65  Aligned_cols=36  Identities=33%  Similarity=0.516  Sum_probs=32.7

Q ss_pred             cEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEee
Q 024372            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRN   47 (268)
Q Consensus         9 ~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~   47 (268)
                      ...+.+|+++|++++|+|   ++++|++|+.|++|++||
T Consensus         4 ~~~~~~h~~~i~~i~~~~---~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    4 VRTFRGHSSSINSIAWSP---DGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEESSSSSEEEEEEET---TSSEEEEEETTSEEEEEE
T ss_pred             EEEEcCCCCcEEEEEEec---ccccceeeCCCCEEEEEC
Confidence            456789999999999996   789999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.68  E-value=6e-06  Score=65.39  Aligned_cols=149  Identities=15%  Similarity=0.032  Sum_probs=106.0

Q ss_pred             EEEEEeCCCCeEEeeCCCCCeEEEeeCccCc--EEEEEecCCCcEEEEeeCCCcEEEEeCCCCCe--ee--eeccCCeEE
Q 024372           33 FLVSASKDSSPMLRNGETGDWIGTFEGHKGA--VWSCCLDANALFSASGSADFTAKLWDALTGDE--KH--SFEHKHIVR  106 (268)
Q Consensus        33 ~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~--V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~--~~--~~~~~~~v~  106 (268)
                      -+..++.|.++++.+++-+...  +.-|-..  +..++++++++++++.+....|.+|.+.....  ..  ..+..+.-.
T Consensus       130 ~~~i~sndht~k~~~~~~~s~~--~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF  207 (344)
T KOG4532|consen  130 PLNIASNDHTGKTMVVSGDSNK--FAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGF  207 (344)
T ss_pred             ceeeccCCcceeEEEEecCccc--ceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCce
Confidence            4667899999998877654322  2224443  78899999999999999999999998754332  11  112334456


Q ss_pred             EEEECCCCCEEEEeeCCCeEEEEECCCCCCCC----eEecCCcccEEEEEEeCCCCc--EEEEeeCCCeEEEEeCCCCce
Q 024372          107 ACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP----REVGNSSGSIRTVAWLHSDQT--ILSSCTDSGGVRLWDARSGKI  180 (268)
Q Consensus       107 ~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~--~~~~~~~d~~i~iwd~~~~~~  180 (268)
                      +.+|+.....+|++..||.+-+||++....+.    ....+|.|.+..+.|++.+..  ++.+=. -+.+.+-|+|+++.
T Consensus       208 ~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEh-fs~~hv~D~R~~~~  286 (344)
T KOG4532|consen  208 YNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEH-FSRVHVVDTRNYVN  286 (344)
T ss_pred             eeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecC-cceEEEEEcccCce
Confidence            78899999999999999999999987543322    233468999999999876643  333322 26899999999876


Q ss_pred             EEee
Q 024372          181 VQTL  184 (268)
Q Consensus       181 ~~~~  184 (268)
                      .+.+
T Consensus       287 ~q~I  290 (344)
T KOG4532|consen  287 HQVI  290 (344)
T ss_pred             eeEE
Confidence            5543

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.67  E-value=2e-06  Score=71.52  Aligned_cols=219  Identities=14%  Similarity=0.115  Sum_probs=125.9

Q ss_pred             eeCCCCCeEEEeeCccCcEEEEEecCCCc-EEEEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEEECCC-CCEEEEeeCC
Q 024372           46 RNGETGDWIGTFEGHKGAVWSCCLDANAL-FSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSED-THLLLTGGFE  123 (268)
Q Consensus        46 w~~~~~~~~~~~~~h~~~V~~~~~~~~~~-~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~-~~~l~s~~~d  123 (268)
                      .+..+-+....+.+|...|+.++|+|... ++..++.+.+|+|.|+++..++..+.....+.+++|..+ ...++.|..+
T Consensus       178 l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~n  257 (463)
T KOG1645|consen  178 LESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQN  257 (463)
T ss_pred             eccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccC
Confidence            33333333444566778899999999876 678899999999999999999888887789999999885 4678888899


Q ss_pred             CeEEEEECCCCCCCCeEec--CCcccEEEEEEeCCCC-----cEEEEeeCCCeEEEEeCCC----CceEEeecCCCCEEE
Q 024372          124 KILRIFDLNRPDAPPREVG--NSSGSIRTVAWLHSDQ-----TILSSCTDSGGVRLWDARS----GKIVQTLETKSPVTS  192 (268)
Q Consensus       124 ~~i~~~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~-----~~~~~~~~d~~i~iwd~~~----~~~~~~~~~~~~v~~  192 (268)
                      |.|.+||++.++....++.  ....+|..++..+.+.     -+++....  -+..|...-    -.++..++..+.+.+
T Consensus       258 G~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~p~vlele~pG~cis  335 (463)
T KOG1645|consen  258 GMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECLPCVLELEPPGICIS  335 (463)
T ss_pred             ceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCCCcccccCCCcceee
Confidence            9999999987664433321  1234566665554432     12222222  244555421    112222333334444


Q ss_pred             EEECCCCcE-EEEeCC-------CeE-EEEeCCCceee----eEE-eC---CCCceeeEEcCCCCCEEE-eccCCCeEEE
Q 024372          193 AEVSRDGRY-ITTADG-------SSV-KFWDANHFGLV----KGY-NM---PCNTESASLEPKLGNIFI-AGGEDMWVHV  254 (268)
Q Consensus       193 ~~~s~~g~~-l~~~~~-------~~v-~~wd~~~~~~~----~~~-~~---~~~~~~~~~~~~~~~~~~-~gs~d~~i~~  254 (268)
                      ....+-.+. +++-..       +.| ..-|.+.+..+    .++ ..   +.......+.+.+..+++ .|.+-..+.+
T Consensus       336 mqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil  415 (463)
T KOG1645|consen  336 MQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELIL  415 (463)
T ss_pred             eeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEE
Confidence            444443333 333211       011 11122222221    112 11   111122233333455555 4556678999


Q ss_pred             EECCCCcEEeec
Q 024372          255 FDFHTGEQIAIT  266 (268)
Q Consensus       255 wd~~~g~~~~~~  266 (268)
                      ||..+++.+..+
T Consensus       416 ~D~~s~evvQ~l  427 (463)
T KOG1645|consen  416 QDPHSFEVVQTL  427 (463)
T ss_pred             eccchhheeeec
Confidence            999988877653

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.64  E-value=4e-05  Score=66.62  Aligned_cols=226  Identities=14%  Similarity=0.086  Sum_probs=130.8

Q ss_pred             CcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEE-EEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeeccCCeEEEE-
Q 024372           31 GFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWS-CCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRAC-  108 (268)
Q Consensus        31 g~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~-~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v-  108 (268)
                      +..++.++.++.+.-+|.++|+.+=+.... +.+.+ ..+. ++ .++.+..++.+..+|..+++.+-......+...+ 
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~ssP~v~-~~-~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~  196 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVA-GEALSRPVVS-DG-LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLR  196 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCC-CceecCCEEE-CC-EEEEECCCCEEEEEEccCCCEeeeecCCCCccccc
Confidence            446677888999999999999865433322 12211 1112 34 3445667889999999999987766533211100 


Q ss_pred             -EECC--CCCEEEEeeCCCeEEEEECCCCCCCCeEe-cCCcc--c---EEEEEEeC--CCCcEEEEeeCCCeEEEEeCCC
Q 024372          109 -AFSE--DTHLLLTGGFEKILRIFDLNRPDAPPREV-GNSSG--S---IRTVAWLH--SDQTILSSCTDSGGVRLWDARS  177 (268)
Q Consensus       109 -~~~~--~~~~l~s~~~d~~i~~~d~~~~~~~~~~~-~~~~~--~---v~~~~~~~--~~~~~~~~~~~d~~i~iwd~~~  177 (268)
                       .-+|  .+..++.++.++.+..+|..+++...+.. ....+  .   ...+...|  .++.++++ +.++.+.-.|+++
T Consensus       197 ~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~-~~~g~l~ald~~t  275 (394)
T PRK11138        197 GESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYAL-AYNGNLVALDLRS  275 (394)
T ss_pred             CCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEE-EcCCeEEEEECCC
Confidence             0122  12346667778888888877665433221 11000  0   00000011  13445544 4568999999999


Q ss_pred             CceEEeecCCCCEEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEeCC-CC-ceeeEEcCCCCCEEEeccCCCeEEEE
Q 024372          178 GKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMP-CN-TESASLEPKLGNIFIAGGEDMWVHVF  255 (268)
Q Consensus       178 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~gs~d~~i~~w  255 (268)
                      |+.+...+.... ..+.. .++++++.+.++.+..+|..+++.+-..... .. ..+...   .+..++.++.|+.+++.
T Consensus       276 G~~~W~~~~~~~-~~~~~-~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v---~~g~l~v~~~~G~l~~l  350 (394)
T PRK11138        276 GQIVWKREYGSV-NDFAV-DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL---YNGYLVVGDSEGYLHWI  350 (394)
T ss_pred             CCEEEeecCCCc-cCcEE-ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE---ECCEEEEEeCCCEEEEE
Confidence            998765543221 12222 2455566677889999999887665433221 11 111111   25667888999999999


Q ss_pred             ECCCCcEEee
Q 024372          256 DFHTGEQIAI  265 (268)
Q Consensus       256 d~~~g~~~~~  265 (268)
                      |.++|+.+..
T Consensus       351 d~~tG~~~~~  360 (394)
T PRK11138        351 NREDGRFVAQ  360 (394)
T ss_pred             ECCCCCEEEE
Confidence            9999998754

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.63  E-value=0.00012  Score=59.03  Aligned_cols=199  Identities=13%  Similarity=0.078  Sum_probs=115.8

Q ss_pred             cEEeeecCCCeeeEEEecCCCCCcEEEEE-eCCCCeEEeeCCCCCeEEEeeCc-cCcEEEEEecCCCcEEEEeeCCCcEE
Q 024372            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSA-SKDSSPMLRNGETGDWIGTFEGH-KGAVWSCCLDANALFSASGSADFTAK   86 (268)
Q Consensus         9 ~~~~~~h~~~v~~~~f~~~~~dg~~l~s~-s~d~~i~iw~~~~~~~~~~~~~h-~~~V~~~~~~~~~~~l~s~s~D~~v~   86 (268)
                      ++.+.+-.+.+.+|.|+|   +...|++. ...+.|...+. +|+.++++.-. .+-.-.+++..++.++++.-+++.+.
T Consensus        14 ~~~l~g~~~e~SGLTy~p---d~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~   89 (248)
T PF06977_consen   14 AKPLPGILDELSGLTYNP---DTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLY   89 (248)
T ss_dssp             EEE-TT--S-EEEEEEET---TTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEE
T ss_pred             eeECCCccCCccccEEcC---CCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEE
Confidence            444556666799999996   44445544 44444444564 68888877533 35678888988888887777799999


Q ss_pred             EEeCCCCC----e--eeeec------cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCC--CCCCCeE--------ecCC
Q 024372           87 LWDALTGD----E--KHSFE------HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNR--PDAPPRE--------VGNS  144 (268)
Q Consensus        87 iw~~~~~~----~--~~~~~------~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~--~~~~~~~--------~~~~  144 (268)
                      +.++....    .  ...+.      +...+-.++|++.++.|+.+-.....++|.+..  .......        ....
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (248)
T PF06977_consen   90 IFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF  169 (248)
T ss_dssp             EEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--
T ss_pred             EEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccce
Confidence            99883321    1  11121      233578899999877777776666667776643  1111111        0112


Q ss_pred             cccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCC----------CCEEEEEECCCCcEEEEeCCCeEEE
Q 024372          145 SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK----------SPVTSAEVSRDGRYITTADGSSVKF  212 (268)
Q Consensus       145 ~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~----------~~v~~~~~s~~g~~l~~~~~~~v~~  212 (268)
                      ...+..+.+.|..+++++-+...+.|..+| ++|+.+..+...          .....+++.++|++.++++-+....
T Consensus       170 ~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~  246 (248)
T PF06977_consen  170 VRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYR  246 (248)
T ss_dssp             SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEE
T ss_pred             eccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEE
Confidence            335678899999888888888889999999 778877765422          2578999999999988887554443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.61  E-value=4.7e-05  Score=65.35  Aligned_cols=234  Identities=15%  Similarity=0.162  Sum_probs=141.8

Q ss_pred             CeeeEEEecCCCCCcEEEEEeCCCC---------------eEEeeCCCCCeEEEeeCccCc--EE-EEEecCCCcEEEEe
Q 024372           18 PVVDLFYSPITPDGFFLVSASKDSS---------------PMLRNGETGDWIGTFEGHKGA--VW-SCCLDANALFSASG   79 (268)
Q Consensus        18 ~v~~~~f~~~~~dg~~l~s~s~d~~---------------i~iw~~~~~~~~~~~~~h~~~--V~-~~~~~~~~~~l~s~   79 (268)
                      .|..+.|+|   .|+||.+-+.-..               +.+||..+|..+..+.+-..+  .+ -+.|+-+..+.|--
T Consensus        73 ~V~~~~fSP---~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv  149 (561)
T COG5354          73 DVKYLDFSP---NEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV  149 (561)
T ss_pred             CceecccCc---ccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh
Confidence            567777774   8999999865544               889999999999999876555  44 56788777776544


Q ss_pred             eCCCcEEEEeCCCCCeeeeec--cCCeEEEEEECCC--CCEEEE-----eeCCCeEEEEECCCCCCCCeEecCCcccEEE
Q 024372           80 SADFTAKLWDALTGDEKHSFE--HKHIVRACAFSED--THLLLT-----GGFEKILRIFDLNRPDAPPREVGNSSGSIRT  150 (268)
Q Consensus        80 s~D~~v~iw~~~~~~~~~~~~--~~~~v~~v~~~~~--~~~l~s-----~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~  150 (268)
                       -...++|+++..+-....+.  ....+....++|.  +..|+.     .+....+++|.+...... ....-.+..-..
T Consensus       150 -v~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l-~tk~lfk~~~~q  227 (561)
T COG5354         150 -VGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVL-VTKNLFKVSGVQ  227 (561)
T ss_pred             -ccCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCee-eeeeeEeecccE
Confidence             34578899872222211111  1234666677774  334443     466778899988643322 111111122234


Q ss_pred             EEEeCCCCcEEEE---e-------eCCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEE-e--CCCeEEEEeCCC
Q 024372          151 VAWLHSDQTILSS---C-------TDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-A--DGSSVKFWDANH  217 (268)
Q Consensus       151 ~~~~~~~~~~~~~---~-------~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~--~~~~v~~wd~~~  217 (268)
                      +.|.+.+..++.-   -       .....+.|++++...+--......+|...+|.|.++.++. +  ....+.++|++.
T Consensus       228 LkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~  307 (561)
T COG5354         228 LKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG  307 (561)
T ss_pred             EEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeeccccc
Confidence            5666666543321   1       1124688888885554333355788999999999866543 3  357889999986


Q ss_pred             ceeeeEEeCCC-CceeeEEcCCCCCEEEeccCC---CeEEEEECCCC
Q 024372          218 FGLVKGYNMPC-NTESASLEPKLGNIFIAGGED---MWVHVFDFHTG  260 (268)
Q Consensus       218 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gs~d---~~i~~wd~~~g  260 (268)
                      .  +. +..+. ......|+| .+++++.++-|   +.|.+||....
T Consensus       308 N--l~-~~~Pe~~rNT~~fsp-~~r~il~agF~nl~gni~i~~~~~r  350 (561)
T COG5354         308 N--LR-FYFPEQKRNTIFFSP-HERYILFAGFDNLQGNIEIFDPAGR  350 (561)
T ss_pred             c--eE-EecCCcccccccccC-cccEEEEecCCccccceEEeccCCc
Confidence            5  33 33332 233444455 56666665443   56888887543

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.60  E-value=3.9e-06  Score=74.67  Aligned_cols=190  Identities=13%  Similarity=0.138  Sum_probs=125.7

Q ss_pred             eeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeC--ccCcEEEEEecCCCcEEEEeeCCCcEEEEe
Q 024372           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG--HKGAVWSCCLDANALFSASGSADFTAKLWD   89 (268)
Q Consensus        12 ~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~--h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~   89 (268)
                      +.||++.|..+.|+.   ..+.|-+...+|-|.+|-..+|.+...+-.  .+.-|.+++|..+|..++-.=.||.|.+=.
T Consensus        67 LeGH~~sV~vvTWNe---~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGs  143 (1189)
T KOG2041|consen   67 LEGHNASVMVVTWNE---NNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGS  143 (1189)
T ss_pred             hccCcceEEEEEecc---ccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEe
Confidence            469999999999985   567888889999999999999987665532  466799999999999887777788776654


Q ss_pred             CCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCC---CCCeE-------ecCCcccEEEEEE------
Q 024372           90 ALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPD---APPRE-------VGNSSGSIRTVAW------  153 (268)
Q Consensus        90 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~---~~~~~-------~~~~~~~v~~~~~------  153 (268)
                      +..+..-..--.......+.|++|.+.+..+-.+|.+.+||.....   .....       +......+-.+.|      
T Consensus       144 vdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~  223 (1189)
T KOG2041|consen  144 VDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQ  223 (1189)
T ss_pred             eccceecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccc
Confidence            4332210000011224468899999888888888999999854211   00010       1111112334444      


Q ss_pred             -eCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEE
Q 024372          154 -LHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT  204 (268)
Q Consensus       154 -~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  204 (268)
                       .+++.-.++.|.+.|.+.|---.....-..+.....+..+.|+|+|.+++.
T Consensus       224 ~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAv  275 (1189)
T KOG2041|consen  224 PVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAV  275 (1189)
T ss_pred             cCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEE
Confidence             344455677888888888854433333333444455778999999999864

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.59  E-value=3.3e-05  Score=67.21  Aligned_cols=222  Identities=12%  Similarity=0.033  Sum_probs=130.2

Q ss_pred             CcEEEEEeCCCCeEEeeCCCCCeEEE--eeCccCc-------E--EEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeee
Q 024372           31 GFFLVSASKDSSPMLRNGETGDWIGT--FEGHKGA-------V--WSCCLDANALFSASGSADFTAKLWDALTGDEKHSF   99 (268)
Q Consensus        31 g~~l~s~s~d~~i~iw~~~~~~~~~~--~~~h~~~-------V--~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~   99 (268)
                      +..+..++.++.+.-+|..+|+.+=+  +......       .  ..+..  .+..+..++.++.+..+|..+++.+-..
T Consensus        69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~  146 (394)
T PRK11138         69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQT  146 (394)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence            44777888889888899999985532  2221000       0  00111  2334555678899999999999987776


Q ss_pred             ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCc-----ccEEEEEEeCCCCcEEEEeeCCCeEEEEe
Q 024372          100 EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSS-----GSIRTVAWLHSDQTILSSCTDSGGVRLWD  174 (268)
Q Consensus       100 ~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~d~~i~iwd  174 (268)
                      .....+.+--.- .+..++.+..++.+.-+|..+++...+......     +...-+. .  ++.+++ ++.++.+...|
T Consensus       147 ~~~~~~~ssP~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v-~--~~~v~~-~~~~g~v~a~d  221 (394)
T PRK11138        147 KVAGEALSRPVV-SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT-A--FGGAIV-GGDNGRVSAVL  221 (394)
T ss_pred             cCCCceecCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE-E--CCEEEE-EcCCCEEEEEE
Confidence            544433211000 234566677788899999887765433321100     0000011 1  223444 44568999999


Q ss_pred             CCCCceEEeecCCCC--------EEEEEECC---CCcEEEEeCCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEE
Q 024372          175 ARSGKIVQTLETKSP--------VTSAEVSR---DGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIF  243 (268)
Q Consensus       175 ~~~~~~~~~~~~~~~--------v~~~~~s~---~g~~l~~~~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (268)
                      .++|+.+...+...+        ...+..+|   ++..++++.++.+...|..+++.+-....... .....   .+..+
T Consensus       222 ~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~~---~~~~v  297 (394)
T PRK11138        222 MEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGSV-NDFAV---DGGRI  297 (394)
T ss_pred             ccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCCc-cCcEE---ECCEE
Confidence            999987655432110        11111222   55566667788999999988876654443221 11111   35567


Q ss_pred             EeccCCCeEEEEECCCCcEE
Q 024372          244 IAGGEDMWVHVFDFHTGEQI  263 (268)
Q Consensus       244 ~~gs~d~~i~~wd~~~g~~~  263 (268)
                      +.++.|+.++.+|.++|+++
T Consensus       298 y~~~~~g~l~ald~~tG~~~  317 (394)
T PRK11138        298 YLVDQNDRVYALDTRGGVEL  317 (394)
T ss_pred             EEEcCCCeEEEEECCCCcEE
Confidence            77788899999999998865

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.57  E-value=5.9e-05  Score=71.94  Aligned_cols=227  Identities=16%  Similarity=0.193  Sum_probs=141.0

Q ss_pred             cCCCeeeEEEecCCCCCcEEEEEeC---C---CCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeC---CCcE
Q 024372           15 HSRPVVDLFYSPITPDGFFLVSASK---D---SSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSA---DFTA   85 (268)
Q Consensus        15 h~~~v~~~~f~~~~~dg~~l~s~s~---d---~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~---D~~v   85 (268)
                      +...-..++|.   .||+|+|+.+.   .   +.+|||+-+ |++..+-+.-.+--..++|.|.|.++|+.-.   ...|
T Consensus       208 ~dd~~~~ISWR---GDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~V  283 (928)
T PF04762_consen  208 WDDGRVRISWR---GDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDV  283 (928)
T ss_pred             cCCCceEEEEC---CCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEE
Confidence            44455689998   69999999986   2   467899865 7665554433333456789999999998764   3566


Q ss_pred             EEEeCCCCCeeeeec-----cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCC-CeEec-CCcccEEEEEEeCCCC
Q 024372           86 KLWDALTGDEKHSFE-----HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP-PREVG-NSSGSIRTVAWLHSDQ  158 (268)
Q Consensus        86 ~iw~~~~~~~~~~~~-----~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~-~~~~~-~~~~~v~~~~~~~~~~  158 (268)
                      .+|.-+ |.....|.     ....|..+.|++++.+||.-..|. |.+|-....... .+++. .....+..+.|.|..+
T Consensus       284 vFfErN-GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p  361 (928)
T PF04762_consen  284 VFFERN-GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKP  361 (928)
T ss_pred             EEEecC-CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCC
Confidence            677753 33333332     234689999999999999877555 999987654322 22322 1222344588888776


Q ss_pred             cEEEEeeCCCeEEEEeCCCCceEEeecCCCCEEEEEECC-CCcEEEEeCCCeEEEEeCCCcee-----eeEEeCCCCcee
Q 024372          159 TILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSR-DGRYITTADGSSVKFWDANHFGL-----VKGYNMPCNTES  232 (268)
Q Consensus       159 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~~~v~~wd~~~~~~-----~~~~~~~~~~~~  232 (268)
                      ..+...+.+|.+..++..-.     ...     +-..+| |.-.++..++..+++=+++....     ...+..+..+..
T Consensus       362 ~~L~v~t~~g~~~~~~~~~~-----v~~-----s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~  431 (928)
T PF04762_consen  362 LRLHVLTSNGQYEIYDFAWD-----VSR-----SPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVND  431 (928)
T ss_pred             CEEEEEecCCcEEEEEEEEE-----EEe-----cCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEE
Confidence            65544444466655543200     000     000112 22345556777888877765432     234445667777


Q ss_pred             eEEcCCCCCEEEeccCCCeEEEEECC
Q 024372          233 ASLEPKLGNIFIAGGEDMWVHVFDFH  258 (268)
Q Consensus       233 ~~~~~~~~~~~~~gs~d~~i~~wd~~  258 (268)
                      +++.+ ++..+++-..|+.|.+|...
T Consensus       432 vaf~~-~~~~~avl~~d~~l~~~~~~  456 (928)
T PF04762_consen  432 VAFSP-SNSRFAVLTSDGSLSIYEWD  456 (928)
T ss_pred             EEEeC-CCCeEEEEECCCCEEEEEec
Confidence            88877 46668888889988888854

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.54  E-value=0.00031  Score=57.73  Aligned_cols=222  Identities=17%  Similarity=0.172  Sum_probs=125.9

Q ss_pred             eEEEecCCCCCcEEEEEeCCCCe-EEeeCCCCCeEEEeeCccCcEEE--EEecCCCcEEEEeeC-----CCcEEEEeCC-
Q 024372           21 DLFYSPITPDGFFLVSASKDSSP-MLRNGETGDWIGTFEGHKGAVWS--CCLDANALFSASGSA-----DFTAKLWDAL-   91 (268)
Q Consensus        21 ~~~f~~~~~dg~~l~s~s~d~~i-~iw~~~~~~~~~~~~~h~~~V~~--~~~~~~~~~l~s~s~-----D~~v~iw~~~-   91 (268)
                      +++.+|.  .+..++.+-+-|+- .++|..+++....+....+.-+.  -.|++||++|.+.-.     .|.|-|||.. 
T Consensus         9 ~~a~~p~--~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~   86 (305)
T PF07433_consen    9 GVAAHPT--RPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR   86 (305)
T ss_pred             ceeeCCC--CCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence            4556653  45677777777765 46899988877665432222111  358999999876533     4789999998 


Q ss_pred             CCCeeeeecc-CCeEEEEEECCCCCEEEEeeC------------------CCeEEEEECCCCCCCCe-Ee--cCCcccEE
Q 024372           92 TGDEKHSFEH-KHIVRACAFSEDTHLLLTGGF------------------EKILRIFDLNRPDAPPR-EV--GNSSGSIR  149 (268)
Q Consensus        92 ~~~~~~~~~~-~~~v~~v~~~~~~~~l~s~~~------------------d~~i~~~d~~~~~~~~~-~~--~~~~~~v~  149 (268)
                      +...+..+.. .---.-+.+.||++.|+.+..                  +-.+.+.|..+++...+ ..  ..|+-.+.
T Consensus        87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiR  166 (305)
T PF07433_consen   87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIR  166 (305)
T ss_pred             CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccccee
Confidence            4444455532 112233557888877776521                  11122333344432222 12  23455677


Q ss_pred             EEEEeCCCCcEEEEeeCCCe-------EEEEeCCCCceEEeec--------CCCCEEEEEECCCCcEEEEe--CCCeEEE
Q 024372          150 TVAWLHSDQTILSSCTDSGG-------VRLWDARSGKIVQTLE--------TKSPVTSAEVSRDGRYITTA--DGSSVKF  212 (268)
Q Consensus       150 ~~~~~~~~~~~~~~~~~d~~-------i~iwd~~~~~~~~~~~--------~~~~v~~~~~s~~g~~l~~~--~~~~v~~  212 (268)
                      .+++.+++. ++.+.-..+.       |-++  +.++.+..+.        ...-+-++++++++.+++.+  .++.+-+
T Consensus       167 HLa~~~~G~-V~~a~Q~qg~~~~~~PLva~~--~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~  243 (305)
T PF07433_consen  167 HLAVDGDGT-VAFAMQYQGDPGDAPPLVALH--RRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAV  243 (305)
T ss_pred             eEEecCCCc-EEEEEecCCCCCccCCeEEEE--cCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEE
Confidence            777766543 3333333221       2232  2233333332        23568899999999887655  4789999


Q ss_pred             EeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCCC
Q 024372          213 WDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDM  250 (268)
Q Consensus       213 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~  250 (268)
                      ||..+++.+.....+ ..+.++..  .+.++++.+...
T Consensus       244 ~d~~tg~~~~~~~l~-D~cGva~~--~~~f~~ssG~G~  278 (305)
T PF07433_consen  244 WDAATGRLLGSVPLP-DACGVAPT--DDGFLVSSGQGQ  278 (305)
T ss_pred             EECCCCCEeeccccC-ceeeeeec--CCceEEeCCCcc
Confidence            999998887766654 22223322  233555555543

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.50  E-value=0.00027  Score=57.23  Aligned_cols=193  Identities=16%  Similarity=0.167  Sum_probs=116.1

Q ss_pred             EEEecC-CCcEEEEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEEEC-CCCCEEEEeeCCCeEEEEECCCCCCCCeEe--
Q 024372           66 SCCLDA-NALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFS-EDTHLLLTGGFEKILRIFDLNRPDAPPREV--  141 (268)
Q Consensus        66 ~~~~~~-~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~-~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~--  141 (268)
                      ...|.+ ++.++.+--..+.|..|+..++.... +.... ...+.+. +++.+++ +...+ +.++|+.+++......  
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~-~~G~~~~~~~g~l~v-~~~~~-~~~~d~~~g~~~~~~~~~   79 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG-PNGMAFDRPDGRLYV-ADSGG-IAVVDPDTGKVTVLADLP   79 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS-EEEEEEECTTSEEEE-EETTC-EEEEETTTTEEEEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC-CceEEEEccCCEEEE-EEcCc-eEEEecCCCcEEEEeecc
Confidence            345776 66677777778899999987765533 33333 4455666 6665544 44444 4566877653221111  


Q ss_pred             -cC-CcccEEEEEEeCCCCcEEEEeeCC--------CeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEE--eCCCe
Q 024372          142 -GN-SSGSIRTVAWLHSDQTILSSCTDS--------GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT--ADGSS  209 (268)
Q Consensus       142 -~~-~~~~v~~~~~~~~~~~~~~~~~~d--------~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~--~~~~~  209 (268)
                       .. .....+.+++.+++. +.++....        +.|..++.. ++.......-...+.++|+|+++.|..  +..+.
T Consensus        80 ~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~  157 (246)
T PF08450_consen   80 DGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGR  157 (246)
T ss_dssp             TTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTE
T ss_pred             CCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccce
Confidence             11 234567788888765 44443332        457777877 665444444456899999999986643  34578


Q ss_pred             EEEEeCCCc-e-e--eeEE-eCCCC---ceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEeec
Q 024372          210 VKFWDANHF-G-L--VKGY-NMPCN---TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       210 v~~wd~~~~-~-~--~~~~-~~~~~---~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~~  266 (268)
                      |..+|+... . .  .+.+ ..+..   +..+++.. +|.++++.-..+.|.++|.. |+.+...
T Consensus       158 i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~-~G~l~va~~~~~~I~~~~p~-G~~~~~i  220 (246)
T PF08450_consen  158 IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS-DGNLWVADWGGGRIVVFDPD-GKLLREI  220 (246)
T ss_dssp             EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT-TS-EEEEEETTTEEEEEETT-SCEEEEE
T ss_pred             eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC-CCCEEEEEcCCCEEEEECCC-ccEEEEE
Confidence            888887432 1 1  1222 22222   34556666 68888887778889999976 8877653

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.45  E-value=3.8e-05  Score=66.61  Aligned_cols=113  Identities=15%  Similarity=0.232  Sum_probs=70.3

Q ss_pred             eEEEEEECCCCCEEEEeeC---CCeEEEEECCCCCCCCeEe-cCCcccEEEEEEeCCCCcEEEEe--eCCCeEEEEeCCC
Q 024372          104 IVRACAFSEDTHLLLTGGF---EKILRIFDLNRPDAPPREV-GNSSGSIRTVAWLHSDQTILSSC--TDSGGVRLWDARS  177 (268)
Q Consensus       104 ~v~~v~~~~~~~~l~s~~~---d~~i~~~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~--~~d~~i~iwd~~~  177 (268)
                      .|...+|.|.|..+++-+.   ..++..|-+++........ .......+.+.|+|.|+.+++++  +..|.+..+|+.-
T Consensus       447 ~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~  526 (698)
T KOG2314|consen  447 SVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY  526 (698)
T ss_pred             heeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecch
Confidence            4556678898877765432   2557777765211111111 11122456789999999876654  3367899999875


Q ss_pred             CceEEee-cCCCCEEEEEECCCCcEEEEeC-------CCeEEEEeCC
Q 024372          178 GKIVQTL-ETKSPVTSAEVSRDGRYITTAD-------GSSVKFWDAN  216 (268)
Q Consensus       178 ~~~~~~~-~~~~~v~~~~~s~~g~~l~~~~-------~~~v~~wd~~  216 (268)
                      ..+..+- ..|...+.+.|.|.|+|++++.       |..-++|+.+
T Consensus       527 a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq  573 (698)
T KOG2314|consen  527 ADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ  573 (698)
T ss_pred             hhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence            4433322 2345578899999999997643       4456777765

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.45  E-value=0.00021  Score=67.39  Aligned_cols=199  Identities=12%  Similarity=0.176  Sum_probs=127.0

Q ss_pred             CCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeC----C
Q 024372           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA----L   91 (268)
Q Consensus        16 ~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~----~   91 (268)
                      ...|.++.|..   +++.+..+..+|.|.+.|.+++.+. ....-...|.+.+|+||+..++-...++++.+-.-    -
T Consensus        68 d~~i~s~~fl~---d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i  143 (1265)
T KOG1920|consen   68 DDEIVSVQFLA---DTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPI  143 (1265)
T ss_pred             CcceEEEEEec---ccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccch
Confidence            35788999974   6778888999999999999887532 12223568999999999999887777777776432    1


Q ss_pred             CCCee-------------------eeec-------------cCC---------eEEEEEECCCCCEEEE-----eeCCCe
Q 024372           92 TGDEK-------------------HSFE-------------HKH---------IVRACAFSEDTHLLLT-----GGFEKI  125 (268)
Q Consensus        92 ~~~~~-------------------~~~~-------------~~~---------~v~~v~~~~~~~~l~s-----~~~d~~  125 (268)
                      .-+..                   ..+.             +..         .=..++|--||+++++     ...-+.
T Consensus       144 ~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk  223 (1265)
T KOG1920|consen  144 AEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRK  223 (1265)
T ss_pred             hccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCcee
Confidence            11110                   0110             000         0124888889999987     333389


Q ss_pred             EEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEe--eCCCeEEEEeC---CCCceEEeecCC-CCEEEEEECCCC
Q 024372          126 LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC--TDSGGVRLWDA---RSGKIVQTLETK-SPVTSAEVSRDG  199 (268)
Q Consensus       126 i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~d~~i~iwd~---~~~~~~~~~~~~-~~v~~~~~s~~g  199 (268)
                      |++||-+ +. +........+.-.+++|-|.|..+.+..  ++|+.|.++.-   +-|+..-.++.. .++..++|+.++
T Consensus       224 irV~drE-g~-Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~s  301 (1265)
T KOG1920|consen  224 IRVYDRE-GA-LNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNS  301 (1265)
T ss_pred             EEEeccc-ch-hhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCC
Confidence            9999954 32 2222222334456789999765544332  33356888752   333332223322 348999999999


Q ss_pred             cEEEE---e-CCCeEEEEeCCCcee
Q 024372          200 RYITT---A-DGSSVKFWDANHFGL  220 (268)
Q Consensus       200 ~~l~~---~-~~~~v~~wd~~~~~~  220 (268)
                      ..|+.   . ....|++|-+.++.-
T Consensus       302 diLAv~~~~~e~~~v~lwt~~NyhW  326 (1265)
T KOG1920|consen  302 DILAVVTSNLENSLVQLWTTGNYHW  326 (1265)
T ss_pred             CceeeeecccccceEEEEEecCeEE
Confidence            98875   2 345699999998754

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.44  E-value=2.9e-05  Score=67.88  Aligned_cols=112  Identities=16%  Similarity=0.211  Sum_probs=80.7

Q ss_pred             eeeEEEecCCCCCcEEEEE----eCCCCeE----EeeCCCCCe--E--EEeeCccCcEEEEEecCCCcEEEEeeCCCcEE
Q 024372           19 VVDLFYSPITPDGFFLVSA----SKDSSPM----LRNGETGDW--I--GTFEGHKGAVWSCCLDANALFSASGSADFTAK   86 (268)
Q Consensus        19 v~~~~f~~~~~dg~~l~s~----s~d~~i~----iw~~~~~~~--~--~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~   86 (268)
                      ..++.|+-.  +.+.+.+-    +.+|.+.    +|+...++.  +  .++ .....|.+++++|+...++.|+.||.|.
T Consensus       208 Pl~~~Fs~~--~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~kLvlGC~DgSii  284 (545)
T PF11768_consen  208 PLDVEFSLN--QPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSEDKLVLGCEDGSII  284 (545)
T ss_pred             cEEEEccCC--CCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCCcceEEecCcccceEEEEecCCeEE
Confidence            357888742  33455544    4456553    355544432  2  222 3677899999999999999999999999


Q ss_pred             EEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCC
Q 024372           87 LWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRP  134 (268)
Q Consensus        87 iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~  134 (268)
                      +||..++..... ...-....++|||+|.++++|+..|.+.+||+.-.
T Consensus       285 LyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  285 LYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             EEEcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            999876644333 34445678999999999999999999999997643

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.44  E-value=1.7e-07  Score=84.89  Aligned_cols=195  Identities=17%  Similarity=0.196  Sum_probs=132.1

Q ss_pred             EEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeee-ccCCeEEEEEECCCCCEEEEee-CCC-eEEEEE
Q 024372           54 IGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGG-FEK-ILRIFD  130 (268)
Q Consensus        54 ~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~-~~~~~v~~v~~~~~~~~l~s~~-~d~-~i~~~d  130 (268)
                      .++|+.|...-.+++|+.+..+|+.|+..|.|+++++.+|...... .|+.+|+.+.-+.+|.+.++.+ +.. ..-+|+
T Consensus      1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred             chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhc
Confidence            4567788889999999999999999999999999999998866555 4889999988888887766544 333 456898


Q ss_pred             CCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeec-C----CCCEEEEEECCCCcEEEEe
Q 024372          131 LNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE-T----KSPVTSAEVSRDGRYITTA  205 (268)
Q Consensus       131 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~----~~~v~~~~~s~~g~~l~~~  205 (268)
                      +.+.......    -..-.++.|+...+.-++++ ......|||++++..+.++- .    ...-+++.|+|+.+++.= 
T Consensus      1174 ~~s~~~~~Hs----f~ed~~vkFsn~~q~r~~gt-~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln- 1247 (1516)
T KOG1832|consen 1174 ASSTGGPRHS----FDEDKAVKFSNSLQFRALGT-EADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN- 1247 (1516)
T ss_pred             cccccCcccc----ccccceeehhhhHHHHHhcc-cccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee-
Confidence            7542111111    12334566654433323332 22468899999998877742 2    123477889999988752 


Q ss_pred             CCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEE
Q 024372          206 DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (268)
Q Consensus       206 ~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~  263 (268)
                         .-.+||++.-+.++.|..-.......|+| .|..+++-++     +||++|=+++
T Consensus      1248 ---dGvLWDvR~~~aIh~FD~ft~~~~G~FHP-~g~eVIINSE-----IwD~RTF~lL 1296 (1516)
T KOG1832|consen 1248 ---DGVLWDVRIPEAIHRFDQFTDYGGGGFHP-SGNEVIINSE-----IWDMRTFKLL 1296 (1516)
T ss_pred             ---CceeeeeccHHHHhhhhhheecccccccC-CCceEEeech-----hhhhHHHHHH
Confidence               23689998877676665433444556666 5777777665     4776654443

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.43  E-value=0.00011  Score=63.20  Aligned_cols=195  Identities=14%  Similarity=0.093  Sum_probs=124.0

Q ss_pred             CCeeeEEEecCCCCCcEEEE-----EeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEee-----------
Q 024372           17 RPVVDLFYSPITPDGFFLVS-----ASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS-----------   80 (268)
Q Consensus        17 ~~v~~~~f~~~~~dg~~l~s-----~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s-----------   80 (268)
                      ..|....|+|.. ++..||.     ...++.+++|.+-.++.+.+-.--+..=..+.|.+.|.+++.--           
T Consensus       174 ~gi~dFsisP~~-n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyf  252 (561)
T COG5354         174 VGILDFSISPEG-NHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYF  252 (561)
T ss_pred             cceeeEEecCCC-CCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeeccccee
Confidence            467777888753 3444443     25677788888776654433222222333456677776653111           


Q ss_pred             CCCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEee--CCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCC
Q 024372           81 ADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGG--FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ  158 (268)
Q Consensus        81 ~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~--~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~  158 (268)
                      ....++|.++....+.-.....++|...+|+|.++.+++.+  ....+.++|++..   ... ....+.-+.+.|+|...
T Consensus       253 gesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N---l~~-~~Pe~~rNT~~fsp~~r  328 (561)
T COG5354         253 GESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN---LRF-YFPEQKRNTIFFSPHER  328 (561)
T ss_pred             ccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc---eEE-ecCCcccccccccCccc
Confidence            12457777776555444445678999999999888776644  6677888887642   222 23344556677888888


Q ss_pred             cEEEEeeCC--CeEEEEeCCCCc-eEEeecCCCCEEEEEECCCCcEEEEeC-------CCeEEEEeCCC
Q 024372          159 TILSSCTDS--GGVRLWDARSGK-IVQTLETKSPVTSAEVSRDGRYITTAD-------GSSVKFWDANH  217 (268)
Q Consensus       159 ~~~~~~~~d--~~i~iwd~~~~~-~~~~~~~~~~v~~~~~s~~g~~l~~~~-------~~~v~~wd~~~  217 (268)
                      +++.+|.+.  |.+-+||....- ++..+... ...-+.|+||+.|+-++.       |..|++||+-.
T Consensus       329 ~il~agF~nl~gni~i~~~~~rf~~~~~~~~~-n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g  396 (561)
T COG5354         329 YILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL-NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYG  396 (561)
T ss_pred             EEEEecCCccccceEEeccCCceEEEEEeecC-CceEeeccCCceEEEecCCCcccccCcceEEEEecC
Confidence            888777653  579999987544 34356542 355678999999875431       66899999853

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.43  E-value=2.1e-06  Score=69.31  Aligned_cols=167  Identities=14%  Similarity=0.205  Sum_probs=107.3

Q ss_pred             CCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCC------------------C-------------------eE----
Q 024372           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG------------------D-------------------WI----   54 (268)
Q Consensus        16 ~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~------------------~-------------------~~----   54 (268)
                      ++.|+.+.|...+ ....++..+.|++|++|.+...                  .                   .+    
T Consensus        85 eEKin~I~w~~~t-~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p  163 (460)
T COG5170          85 EEKINAIEWFDDT-GRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKP  163 (460)
T ss_pred             HHHhhheeeecCC-CcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEecc
Confidence            4567888886533 3456777899999999976432                  0                   00    


Q ss_pred             -EEe-eCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeee----cc-----CCeEEEEEECCC-CCEEEEeeC
Q 024372           55 -GTF-EGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF----EH-----KHIVRACAFSED-THLLLTGGF  122 (268)
Q Consensus        55 -~~~-~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~----~~-----~~~v~~v~~~~~-~~~l~s~~~  122 (268)
                       +.. ..|.-.+.+++|..|...++|+ .|-.|.+|++.-......+    +|     ...|++..|+|. ...+.-.+.
T Consensus       164 ~rvyaNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsS  242 (460)
T COG5170         164 CRVYANAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSS  242 (460)
T ss_pred             ceeccccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecC
Confidence             011 3466778888898888777654 6789999998654432222    12     235788899994 445666677


Q ss_pred             CCeEEEEECCCCC-----CCCe----------EecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCC-ceEEeecC
Q 024372          123 EKILRIFDLNRPD-----APPR----------EVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG-KIVQTLET  186 (268)
Q Consensus       123 d~~i~~~d~~~~~-----~~~~----------~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~-~~~~~~~~  186 (268)
                      .|+|++-|++...     ....          .+..-...|..+.|++.+..+++- .. .+|+|||++.. .++.+++.
T Consensus       243 kG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsR-dy-ltvkiwDvnm~k~pikTi~~  320 (460)
T COG5170         243 KGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSR-DY-LTVKIWDVNMAKNPIKTIPM  320 (460)
T ss_pred             CCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEe-cc-ceEEEEecccccCCceeech
Confidence            8999999987321     1100          011112356778888877655543 33 79999999875 56777654

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.43  E-value=0.00047  Score=55.35  Aligned_cols=192  Identities=16%  Similarity=0.151  Sum_probs=107.3

Q ss_pred             eeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeC-c------cCcEEEEEecCC------CcEEEEeeCCCcEE
Q 024372           20 VDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG-H------KGAVWSCCLDAN------ALFSASGSADFTAK   86 (268)
Q Consensus        20 ~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~-h------~~~V~~~~~~~~------~~~l~s~s~D~~v~   86 (268)
                      +-++|+   ||+.+||.+...|+|+++|....+ +..+.. +      ...|..+.|-+-      ..-|..-..+|.++
T Consensus        47 Rkl~WS---pD~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~  122 (282)
T PF15492_consen   47 RKLAWS---PDCTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLR  122 (282)
T ss_pred             eEEEEC---CCCcEEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceee
Confidence            478897   599999999999999999987543 334432 1      234555544321      11244455677777


Q ss_pred             EEeCC--CCC---eeeeec----cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCC
Q 024372           87 LWDAL--TGD---EKHSFE----HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSD  157 (268)
Q Consensus        87 iw~~~--~~~---~~~~~~----~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~  157 (268)
                      -+-+.  +++   ..+.+.    .+..|.++.++|..++|+.|+....      +.+.   ..  .....+++-....+.
T Consensus       123 Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~---s~--a~~~GLtaWRiL~~~  191 (282)
T PF15492_consen  123 SYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM---SK--ASSCGLTAWRILSDS  191 (282)
T ss_pred             eEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc---cc--ccccCceEEEEcCCC
Confidence            66652  222   233332    3567999999999888887764332      0000   00  011123333333333


Q ss_pred             CcEE-EEeeCCCe------EEEEeCCCCceEE-eecCCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeC
Q 024372          158 QTIL-SSCTDSGG------VRLWDARSGKIVQ-TLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNM  226 (268)
Q Consensus       158 ~~~~-~~~~~d~~------i~iwd~~~~~~~~-~~~~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~  226 (268)
                      +++. ++..+|+.      -.+|.+-+.+... .-+....+..+.+||||.+|++ ..+|.|.+|++-..+..+.+..
T Consensus       192 Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~  269 (282)
T PF15492_consen  192 PYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ  269 (282)
T ss_pred             CcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence            3321 22222221      1233322222111 1122456899999999999886 5689999999977665555543

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.43  E-value=6.5e-06  Score=75.02  Aligned_cols=143  Identities=18%  Similarity=0.212  Sum_probs=103.3

Q ss_pred             CCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeC---------CCcEEEEeCCCCCeeeeec
Q 024372           30 DGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSA---------DFTAKLWDALTGDEKHSFE  100 (268)
Q Consensus        30 dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~---------D~~v~iw~~~~~~~~~~~~  100 (268)
                      ++++|.+|...|+|.+-|..+.+.++++.+|++.|...  +-.|..|+|+|.         |..|+|||+.....+..+.
T Consensus       186 Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf--Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~  263 (1118)
T KOG1275|consen  186 NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF--DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQ  263 (1118)
T ss_pred             cCcEEEeecccceEEeecCCcCceeeeeeccccceeee--eccCCeEEEeecccccccccccchhhhhhhhhhhccCCcc
Confidence            46799999999999999999999999999999999764  445777888764         5678999997766555444


Q ss_pred             cCCeEEEEEECCC-CCEEEEeeCCCeEEEEE---CCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeC
Q 024372          101 HKHIVRACAFSED-THLLLTGGFEKILRIFD---LNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA  175 (268)
Q Consensus       101 ~~~~v~~v~~~~~-~~~l~s~~~d~~i~~~d---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~  175 (268)
                      .+..-.-+.|+|. ...++.++..|...+-|   +..+......+......+..+++++.++. ++-+..+|.|.+|--
T Consensus       264 ~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~a-lafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  264 FPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDA-LAFGDHEGHVNLWAD  341 (1118)
T ss_pred             cccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCce-EEEecccCcEeeecC
Confidence            3332345667773 44677778888888888   43332333344334445888888887765 455566799999973

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.41  E-value=0.00013  Score=63.38  Aligned_cols=228  Identities=19%  Similarity=0.229  Sum_probs=141.3

Q ss_pred             eEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeC-----------CCcEEEEe
Q 024372           21 DLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSA-----------DFTAKLWD   89 (268)
Q Consensus        21 ~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~-----------D~~v~iw~   89 (268)
                      -+.|+   |-|.||+|--.-| |.+|-..+-..++.|. |. .|.-+.|||+..||+|=|.           .+.+.|||
T Consensus       215 yv~wS---P~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD  288 (698)
T KOG2314|consen  215 YVRWS---PKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD  288 (698)
T ss_pred             eEEec---CCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence            35666   4799998776655 5789877766666664 53 5888999999999998653           16799999


Q ss_pred             CCCCCeeeeecc---CCe-EEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEee
Q 024372           90 ALTGDEKHSFEH---KHI-VRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT  165 (268)
Q Consensus        90 ~~~~~~~~~~~~---~~~-v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  165 (268)
                      +.+|...+.+..   +.. -.-..||.|++++|--.. +.|.+|+..+-. +.....-.-..|....|+|.+ .+++.=+
T Consensus       289 I~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~-lld~Kslki~gIr~FswsP~~-~llAYwt  365 (698)
T KOG2314|consen  289 IATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFM-LLDKKSLKISGIRDFSWSPTS-NLLAYWT  365 (698)
T ss_pred             ccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCcee-eecccccCCccccCcccCCCc-ceEEEEc
Confidence            999998888754   222 235679999999987655 568899865421 111111122356777888764 3444311


Q ss_pred             CC-----CeEEEEeCCCCceEEeecCCC-CEEEEEECCCCcEEEEeCC--------C---eEEEEeCCCc-eeeeEEeCC
Q 024372          166 DS-----GGVRLWDARSGKIVQTLETKS-PVTSAEVSRDGRYITTADG--------S---SVKFWDANHF-GLVKGYNMP  227 (268)
Q Consensus       166 ~d-----~~i~iwd~~~~~~~~~~~~~~-~v~~~~~s~~g~~l~~~~~--------~---~v~~wd~~~~-~~~~~~~~~  227 (268)
                      ..     -++-|-.+.+++.+++-.... .=..+.|-.+|.+|..--+        +   .+.|+.++.. -++......
T Consensus       366 pe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velk  445 (698)
T KOG2314|consen  366 PETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELK  445 (698)
T ss_pred             ccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecc
Confidence            11     245666666666666544321 1224556778887753211        1   2445555432 224444555


Q ss_pred             CCceeeEEcCCCCCEEE-eccC--CCeEEEEECC
Q 024372          228 CNTESASLEPKLGNIFI-AGGE--DMWVHVFDFH  258 (268)
Q Consensus       228 ~~~~~~~~~~~~~~~~~-~gs~--d~~i~~wd~~  258 (268)
                      ..+...++.|. |+.|+ ..+.  -.++.+|.++
T Consensus       446 e~vi~FaWEP~-gdkF~vi~g~~~k~tvsfY~~e  478 (698)
T KOG2314|consen  446 ESVIAFAWEPH-GDKFAVISGNTVKNTVSFYAVE  478 (698)
T ss_pred             hheeeeeeccC-CCeEEEEEccccccceeEEEee
Confidence            66677888886 55454 3443  3469999887

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.40  E-value=0.00015  Score=61.98  Aligned_cols=151  Identities=13%  Similarity=0.121  Sum_probs=104.0

Q ss_pred             ECC-CCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCC-eEEEEeCCCCceEEeecCC
Q 024372          110 FSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG-GVRLWDARSGKIVQTLETK  187 (268)
Q Consensus       110 ~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~-~i~iwd~~~~~~~~~~~~~  187 (268)
                      |++ +|.+++..+. |+..+.+...+   ......+.+.|.-..+..+...++ -|..|| .+-|+|.++++.....+.-
T Consensus       327 fa~~~Gd~ia~VSR-GkaFi~~~~~~---~~iqv~~~~~VrY~r~~~~~e~~v-igt~dgD~l~iyd~~~~e~kr~e~~l  401 (668)
T COG4946         327 FAVVNGDYIALVSR-GKAFIMRPWDG---YSIQVGKKGGVRYRRIQVDPEGDV-IGTNDGDKLGIYDKDGGEVKRIEKDL  401 (668)
T ss_pred             hccCCCcEEEEEec-CcEEEECCCCC---eeEEcCCCCceEEEEEccCCcceE-EeccCCceEEEEecCCceEEEeeCCc
Confidence            444 6788888775 45556554322   122234555676666554444444 445566 9999999999877766667


Q ss_pred             CCEEEEEECCCCcEEEEeCC-CeEEEEeCCCceeeeEEeCC--CCceeeEEcCCCCCEEEeccCC----CeEEEEECCCC
Q 024372          188 SPVTSAEVSRDGRYITTADG-SSVKFWDANHFGLVKGYNMP--CNTESASLEPKLGNIFIAGGED----MWVHVFDFHTG  260 (268)
Q Consensus       188 ~~v~~~~~s~~g~~l~~~~~-~~v~~wd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~gs~d----~~i~~wd~~~g  260 (268)
                      +.+.+++.+|+|++++.+.+ ..+.+.|+.++. ++.....  ..+..+.+++ .+++++-+--+    ..|++||+.+|
T Consensus       402 g~I~av~vs~dGK~~vvaNdr~el~vididngn-v~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~  479 (668)
T COG4946         402 GNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN-VRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGG  479 (668)
T ss_pred             cceEEEEEcCCCcEEEEEcCceEEEEEEecCCC-eeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCC
Confidence            78999999999999887765 578888988764 3333322  2355677777 58999887655    46999999999


Q ss_pred             cEEeecc
Q 024372          261 EQIAITS  267 (268)
Q Consensus       261 ~~~~~~~  267 (268)
                      +...+.|
T Consensus       480 Kiy~vTT  486 (668)
T COG4946         480 KIYDVTT  486 (668)
T ss_pred             eEEEecC
Confidence            9888765

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.35  E-value=0.00028  Score=63.11  Aligned_cols=228  Identities=15%  Similarity=0.118  Sum_probs=128.1

Q ss_pred             cEEEEEeCCCCeEEeeCCCCCeEEEeeCccCc-----EE-EEEecCCCcEEEEee---------CCCcEEEEeCCCCCee
Q 024372           32 FFLVSASKDSSPMLRNGETGDWIGTFEGHKGA-----VW-SCCLDANALFSASGS---------ADFTAKLWDALTGDEK   96 (268)
Q Consensus        32 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~-----V~-~~~~~~~~~~l~s~s---------~D~~v~iw~~~~~~~~   96 (268)
                      ..++.++.++.+.-+|.++|+.+=++......     +. ...+. ++. ++.++         .++.+...|..+++.+
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~~~-v~vg~~~~~~~~~~~~g~v~alD~~TG~~~  188 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV-KKL-VIIGSSGAEFFACGVRGALRAYDVETGKLL  188 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE-CCE-EEEeccccccccCCCCcEEEEEECCCCcee
Confidence            57778889999999999999876444322110     11 11122 233 33332         3678888999999877


Q ss_pred             eeeccCCe---------------------E-EEEEECCCCCEEEEeeCCC------------------eEEEEECCCCCC
Q 024372           97 HSFEHKHI---------------------V-RACAFSEDTHLLLTGGFEK------------------ILRIFDLNRPDA  136 (268)
Q Consensus        97 ~~~~~~~~---------------------v-~~v~~~~~~~~l~s~~~d~------------------~i~~~d~~~~~~  136 (268)
                      -.+.....                     + ....+.+.+..++.++.++                  .+.-+|..+++.
T Consensus       189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~  268 (488)
T cd00216         189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV  268 (488)
T ss_pred             eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence            66542110                     0 0123344455666666554                  577778777665


Q ss_pred             CCeEecC-Cccc---E-E--EEE-Ee-CCCC--cEEEEeeCCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEE-
Q 024372          137 PPREVGN-SSGS---I-R--TVA-WL-HSDQ--TILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-  204 (268)
Q Consensus       137 ~~~~~~~-~~~~---v-~--~~~-~~-~~~~--~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-  204 (268)
                      .-+.... +...   . .  .+. .. -++.  .++..++.+|.+.-.|.++|+.+...+..  ...+..+| +..++. 
T Consensus       269 ~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~--~~~~~~~~-~~vyv~~  345 (488)
T cd00216         269 KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV--EQPMAYDP-GLVYLGA  345 (488)
T ss_pred             EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee--ccccccCC-ceEEEcc
Confidence            4433211 1100   0 0  010 00 0111  24555667799999999999988765432  11223344 222221 


Q ss_pred             -----------------eCCCeEEEEeCCCceeeeEEeCCC---------CceeeEEcCCCCCEEEeccCCCeEEEEECC
Q 024372          205 -----------------ADGSSVKFWDANHFGLVKGYNMPC---------NTESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (268)
Q Consensus       205 -----------------~~~~~v~~wd~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~  258 (268)
                                       ..++.+.-.|+.+++.+-.+....         ......... .+..++.++.|+.|+.+|.+
T Consensus       346 ~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~-~g~~v~~g~~dG~l~ald~~  424 (488)
T cd00216         346 FHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT-AGNLVFAGAADGYFRAFDAT  424 (488)
T ss_pred             ccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe-cCCeEEEECCCCeEEEEECC
Confidence                             124567778888877766555431         111111111 36778888899999999999


Q ss_pred             CCcEEee
Q 024372          259 TGEQIAI  265 (268)
Q Consensus       259 ~g~~~~~  265 (268)
                      +|+++-.
T Consensus       425 tG~~lW~  431 (488)
T cd00216         425 TGKELWK  431 (488)
T ss_pred             CCceeeE
Confidence            9998754

The alignment model contains an 8-bladed beta-propeller.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.34  E-value=5.1e-05  Score=67.55  Aligned_cols=192  Identities=19%  Similarity=0.192  Sum_probs=121.6

Q ss_pred             CCCcEEEEEeCCCCeEEeeCCCCCe-EEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeee-------ec
Q 024372           29 PDGFFLVSASKDSSPMLRNGETGDW-IGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHS-------FE  100 (268)
Q Consensus        29 ~dg~~l~s~s~d~~i~iw~~~~~~~-~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~-------~~  100 (268)
                      ..+.+++-|+.-|.+.+++-..|+. +.+..+-.+.+..++++++..++|.|+..|.|-++.++...+...       ..
T Consensus        43 st~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~  122 (726)
T KOG3621|consen   43 ATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKS  122 (726)
T ss_pred             cCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeecccccc
Confidence            3578999999999999999888763 344445566777888999999889999999999998765443111       13


Q ss_pred             cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCC---CCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCC
Q 024372          101 HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRP---DAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS  177 (268)
Q Consensus       101 ~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~  177 (268)
                      |+..|++++|++++..+++|...|++.+--++..   -...+.+....++|..+.+..  ..++++...  .-.+++++.
T Consensus       123 ~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q--~~LLVStl~--r~~Lc~tE~  198 (726)
T KOG3621|consen  123 HKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ--SYLLVSTLT--RCILCQTEA  198 (726)
T ss_pred             CCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc--ceehHhhhh--hhheeecch
Confidence            6778999999999999999999999987766541   111233334456777777653  344443322  345677765


Q ss_pred             CceEE--eecCCCC-EEEEEECCC-----CcEEEEeCCCeEEEEeCCC-ceeeeEEe
Q 024372          178 GKIVQ--TLETKSP-VTSAEVSRD-----GRYITTADGSSVKFWDANH-FGLVKGYN  225 (268)
Q Consensus       178 ~~~~~--~~~~~~~-v~~~~~s~~-----g~~l~~~~~~~v~~wd~~~-~~~~~~~~  225 (268)
                      +...+  +-.-.+. -...+|-|.     .-++.++. -..|+|...- ++.++++.
T Consensus       199 eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaR-PG~RlWead~~G~V~~Thq  254 (726)
T KOG3621|consen  199 ETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCAR-PGLRLWEADFAGEVIKTHQ  254 (726)
T ss_pred             hHHHHhcCCCcCCccccceEEeeccccCCCceEEEec-CCCceEEeecceeEEEeee
Confidence            54211  1111221 123333332     23445554 3567776643 34445554

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.34  E-value=4.6e-06  Score=65.71  Aligned_cols=230  Identities=16%  Similarity=0.169  Sum_probs=129.0

Q ss_pred             eeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCe------------EEEeeCccCcEEEEEecCCCcEEEEeeCCCcEE
Q 024372           19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW------------IGTFEGHKGAVWSCCLDANALFSASGSADFTAK   86 (268)
Q Consensus        19 v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~------------~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~   86 (268)
                      |+.+.|.    +...|+++-.++.+.......+.+            ...+..|+++-..-+.+--+..++++..|+.+-
T Consensus        39 ~~~~~~v----~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~  114 (319)
T KOG4714|consen   39 LSKVSLS----AEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLA  114 (319)
T ss_pred             EEEeech----hhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEE
Confidence            5556665    345788888888777665444332            223333443322111222234578899999999


Q ss_pred             EEeCCCCCeeeeeccCCeEEE-----EEECCCCCEEEEee-----CCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCC
Q 024372           87 LWDALTGDEKHSFEHKHIVRA-----CAFSEDTHLLLTGG-----FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHS  156 (268)
Q Consensus        87 iw~~~~~~~~~~~~~~~~v~~-----v~~~~~~~~l~s~~-----~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~  156 (268)
                      +.+...   .....++.++..     .+....++.+.++.     .-+..+.|+++-.+...... .....+.+++-.|.
T Consensus       115 v~s~~~---~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~-~~~~~v~~l~~hp~  190 (319)
T KOG4714|consen  115 VFSTDK---DLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK-KALDAVTALCSHPA  190 (319)
T ss_pred             EEechH---HHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccc-cccccchhhhCCcc
Confidence            998654   111112221111     11122333333321     11223455543211111111 11234888888888


Q ss_pred             CCcEEEEeeCCCeEEEEeCCCCceEE-eec-CCCCEEEEEECCCC--cEEEEeCCCeEEEEeCCCcee------------
Q 024372          157 DQTILSSCTDSGGVRLWDARSGKIVQ-TLE-TKSPVTSAEVSRDG--RYITTADGSSVKFWDANHFGL------------  220 (268)
Q Consensus       157 ~~~~~~~~~~d~~i~iwd~~~~~~~~-~~~-~~~~v~~~~~s~~g--~~l~~~~~~~v~~wd~~~~~~------------  220 (268)
                      .++++..|++||.+-+||.|...... .+. ++.++..+.|+|..  +++.+++||.+--||..+.-+            
T Consensus       191 qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~i~~~~s~~s~W  270 (319)
T KOG4714|consen  191 QQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLSISNQASVISSW  270 (319)
T ss_pred             cccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEEecCcccccccc
Confidence            88999999999999999999874432 333 45778999999863  677889999999999763111            


Q ss_pred             -----eeE-EeC----CCCceeeEEcCCCCCEEEeccCCCeEEEEE
Q 024372          221 -----VKG-YNM----PCNTESASLEPKLGNIFIAGGEDMWVHVFD  256 (268)
Q Consensus       221 -----~~~-~~~----~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd  256 (268)
                           ++. ...    +....++.-+.--|..+++|+.-+.||+++
T Consensus       271 LsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  271 LSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             ccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence                 110 000    111111211222477899999999999986

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.32  E-value=0.0011  Score=54.49  Aligned_cols=222  Identities=16%  Similarity=0.110  Sum_probs=125.5

Q ss_pred             CCcEEEEEeCCCCeEEeeC-CCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeee-----------
Q 024372           30 DGFFLVSASKDSSPMLRNG-ETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKH-----------   97 (268)
Q Consensus        30 dg~~l~s~s~d~~i~iw~~-~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~-----------   97 (268)
                      .++.|+.|+.+| +.+++. ...+.....  +...|..+..-++-..++.-+ |+.+.++++.......           
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~   81 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR   81 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence            577899999999 788887 333333333  233499998888766655443 5999999986544332           


Q ss_pred             ----eeccCCeEEEEE--ECCCCCEEEEeeCCCeEEEEECCCCC----CCCeEecCCcccEEEEEEeCCCCcEEEEeeCC
Q 024372           98 ----SFEHKHIVRACA--FSEDTHLLLTGGFEKILRIFDLNRPD----APPREVGNSSGSIRTVAWLHSDQTILSSCTDS  167 (268)
Q Consensus        98 ----~~~~~~~v~~v~--~~~~~~~l~s~~~d~~i~~~d~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d  167 (268)
                          .+.....+...+  -...+...+.....+.|.+|......    ...+++.- ...+..++|.+  ..++. +.. 
T Consensus        82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~~--~~i~v-~~~-  156 (275)
T PF00780_consen   82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFLG--NKICV-GTS-  156 (275)
T ss_pred             cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEeC--CEEEE-EeC-
Confidence                111222333333  11233333334445688888875431    23344433 35678888873  33443 444 


Q ss_pred             CeEEEEeCCCCceEEeecCC------------CCEEEEEECCCCcEEEEeCCCeEEEEeCCCceeee--EEeCCCCceee
Q 024372          168 GGVRLWDARSGKIVQTLETK------------SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVK--GYNMPCNTESA  233 (268)
Q Consensus       168 ~~i~iwd~~~~~~~~~~~~~------------~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~--~~~~~~~~~~~  233 (268)
                      +...+.|+.++.....+...            .....+.--+++.++++-++ .-.+.|.. ++..+  .+.....+..+
T Consensus       157 ~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~~~-~g~fv~~~-G~~~r~~~i~W~~~p~~~  234 (275)
T PF00780_consen  157 KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCYDN-IGVFVNKN-GEPSRKSTIQWSSAPQSV  234 (275)
T ss_pred             CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEecc-eEEEEcCC-CCcCcccEEEcCCchhEE
Confidence            56888899987665443211            11233333344566665443 33333442 22222  34444555566


Q ss_pred             EEcCCCCCEEEeccCCCeEEEEECCCCcEEeec
Q 024372          234 SLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       234 ~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~~  266 (268)
                      .+..+   ++++.+.+ .|.+|++.+|+.+.+.
T Consensus       235 ~~~~p---yli~~~~~-~iEV~~~~~~~lvQ~i  263 (275)
T PF00780_consen  235 AYSSP---YLIAFSSN-SIEVRSLETGELVQTI  263 (275)
T ss_pred             EEECC---EEEEECCC-EEEEEECcCCcEEEEE
Confidence            65442   55555554 4999999999998864

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.25  E-value=0.00017  Score=64.58  Aligned_cols=180  Identities=10%  Similarity=0.041  Sum_probs=113.0

Q ss_pred             ecCCCcEEE-EeeCCCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCccc
Q 024372           69 LDANALFSA-SGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGS  147 (268)
Q Consensus        69 ~~~~~~~l~-s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~  147 (268)
                      +++|++.+. +.-..+.+-+.|..+.+...++........+.++++++++++.+++...       +...........+.
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~-------G~tl~em~a~e~d~  272 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEE-------GVTLAEMMAAERDW  272 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCccc-------CcceeeeccccCce
Confidence            345665442 3334456667787777776666655555678899999999888754321       11111110111111


Q ss_pred             EEEE------EEeCCCCcEEEEeeCCCeEEEEeCCC-----CceEEeecCCCCEEEEEECCCCcEEEEeC--CCeEEEEe
Q 024372          148 IRTV------AWLHSDQTILSSCTDSGGVRLWDARS-----GKIVQTLETKSPVTSAEVSRDGRYITTAD--GSSVKFWD  214 (268)
Q Consensus       148 v~~~------~~~~~~~~~~~~~~~d~~i~iwd~~~-----~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~v~~wd  214 (268)
                      +..+      .+.+++...++   .++.|.+.|.++     .+.+..+........+.++|||+++..+.  +.+|.+.|
T Consensus       273 ~vvfni~~iea~vkdGK~~~V---~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVID  349 (635)
T PRK02888        273 VVVFNIARIEEAVKAGKFKTI---GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVID  349 (635)
T ss_pred             EEEEchHHHHHhhhCCCEEEE---CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEE
Confidence            1111      12334544443   247899999998     45667777666678999999999987653  68999999


Q ss_pred             CCCcee------------eeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEECCC
Q 024372          215 ANHFGL------------VKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHT  259 (268)
Q Consensus       215 ~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~  259 (268)
                      +.+.+.            +........+.-..|.+ .|..+.+-..|+.|-.||+.+
T Consensus       350 v~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg-~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        350 VRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDG-RGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             ChhhhhhhhccCCccceEEEeeccCCCcceEEECC-CCCEEEeEeecceeEEEehHH
Confidence            977542            33333333444556655 477888889999999999864

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.24  E-value=9.8e-05  Score=66.71  Aligned_cols=160  Identities=14%  Similarity=0.087  Sum_probs=103.2

Q ss_pred             EEeeecCCCeeeEEEecC----------CCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCC-----Cc
Q 024372           10 LVCHGHSRPVVDLFYSPI----------TPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN-----AL   74 (268)
Q Consensus        10 ~~~~~h~~~v~~~~f~~~----------~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~-----~~   74 (268)
                      +.|..|.+.|.-..+.-.          ..+|.|+++||.||++.|-...+.+...++. -.-++.+++++|+     .+
T Consensus        52 ~~~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk  130 (846)
T KOG2066|consen   52 FALGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSK  130 (846)
T ss_pred             eeeccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhh
Confidence            344567777765554311          1259999999999999999888877665554 2467889999998     56


Q ss_pred             EEEEeeCCCcEEEEeCCC--CC-eeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCc-----c
Q 024372           75 FSASGSADFTAKLWDALT--GD-EKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSS-----G  146 (268)
Q Consensus        75 ~l~s~s~D~~v~iw~~~~--~~-~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~-----~  146 (268)
                      ++++||.-| +.++.-+=  +. .+..-+...+|.++.|.  |+++|=++.+| +++||.+.+.........+.     .
T Consensus       131 ~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~  206 (846)
T KOG2066|consen  131 QFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPEL  206 (846)
T ss_pred             heeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCccc
Confidence            789999888 77765321  11 22112345689999986  66888887776 69999876543222111111     1


Q ss_pred             cEEEEEEeCCCCcEEEEeeCCCeEEEEeCCC
Q 024372          147 SIRTVAWLHSDQTILSSCTDSGGVRLWDARS  177 (268)
Q Consensus       147 ~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~  177 (268)
                      --..+.|.+++  .++-|.. .+|+|..++.
T Consensus       207 fpphl~W~~~~--~LVIGW~-d~v~i~~I~~  234 (846)
T KOG2066|consen  207 FPPHLHWQDED--RLVIGWG-DSVKICSIKK  234 (846)
T ss_pred             CCCceEecCCC--eEEEecC-CeEEEEEEec
Confidence            12356776544  3444555 5899998873

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.19  E-value=0.00016  Score=65.33  Aligned_cols=206  Identities=14%  Similarity=0.143  Sum_probs=131.3

Q ss_pred             EeeecCCCeeeEEEecCC-------C--CCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecC---CC-cEEE
Q 024372           11 VCHGHSRPVVDLFYSPIT-------P--DGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDA---NA-LFSA   77 (268)
Q Consensus        11 ~~~~h~~~v~~~~f~~~~-------~--dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~---~~-~~l~   77 (268)
                      .++-|...|+.+.|.|..       |  .--.||++-..|.|.+||...+..+..|+.|..+|..++|-+   ++ .+|+
T Consensus        50 sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~Ll  129 (1062)
T KOG1912|consen   50 SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLL  129 (1062)
T ss_pred             ccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeE
Confidence            345688999999998732       1  123567777888999999999998889999999999999864   34 4566


Q ss_pred             EeeCCCcEEEEeCCCCCeeeeeccCC-eEEEEEECC-CCCEEEEeeCCCeEEEEEC-CCC--CCCC---eEecCCcc---
Q 024372           78 SGSADFTAKLWDALTGDEKHSFEHKH-IVRACAFSE-DTHLLLTGGFEKILRIFDL-NRP--DAPP---REVGNSSG---  146 (268)
Q Consensus        78 s~s~D~~v~iw~~~~~~~~~~~~~~~-~v~~v~~~~-~~~~l~s~~~d~~i~~~d~-~~~--~~~~---~~~~~~~~---  146 (268)
                      .-..-.++-+|+..+|.....+.-.. ...|..+.| |.+.+..-+..|.+-+-+. ...  ....   +....|..   
T Consensus       130 aIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~  209 (1062)
T KOG1912|consen  130 AIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAH  209 (1062)
T ss_pred             EecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhh
Confidence            66667899999999999877765433 455677888 5555554445555544432 111  1111   11111111   


Q ss_pred             ---------c-----------E--EEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCC-CCEEEEEECCCC--cE
Q 024372          147 ---------S-----------I--RTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDG--RY  201 (268)
Q Consensus       147 ---------~-----------v--~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~s~~g--~~  201 (268)
                               .           .  -.++|+|.-.+++..... +.+.++|++-..++...... +.+.-+.+-|++  ..
T Consensus       210 lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~p-rellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~  288 (1062)
T KOG1912|consen  210 LERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFP-RELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDA  288 (1062)
T ss_pred             hhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEec-cceEEEcchhhceeEEEEeccCCcceeEeccCCCcce
Confidence                     0           0  123455554554443344 78999999988888776532 334445555554  45


Q ss_pred             EEE-eCCCeEEEEeCCC
Q 024372          202 ITT-ADGSSVKFWDANH  217 (268)
Q Consensus       202 l~~-~~~~~v~~wd~~~  217 (268)
                      +.+ ..+|.+.+|--+.
T Consensus       289 LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  289 LFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             EEEEecCCeEEEEEeec
Confidence            666 4688999987543

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.18  E-value=0.00091  Score=60.13  Aligned_cols=122  Identities=13%  Similarity=0.184  Sum_probs=78.4

Q ss_pred             CcEEEEeCCC-----CCeeeeeccCCeEEEEEECCCCCEEEEee-CCCeEEEEECCCCCC-----------CCeEecCCc
Q 024372           83 FTAKLWDALT-----GDEKHSFEHKHIVRACAFSEDTHLLLTGG-FEKILRIFDLNRPDA-----------PPREVGNSS  145 (268)
Q Consensus        83 ~~v~iw~~~~-----~~~~~~~~~~~~v~~v~~~~~~~~l~s~~-~d~~i~~~d~~~~~~-----------~~~~~~~~~  145 (268)
                      +.|.+.|..+     ......+..+.....+.++||+++++.++ .+.++.+.|+.+.+.           ...+..--.
T Consensus       296 n~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGl  375 (635)
T PRK02888        296 SKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGL  375 (635)
T ss_pred             CEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCC
Confidence            4577777776     34566666777778899999999777654 689999999875321           011111112


Q ss_pred             ccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCC----------CceEEeecCCCCEEEEEE------CCCCcEEEEeC
Q 024372          146 GSIRTVAWLHSDQTILSSCTDSGGVRLWDARS----------GKIVQTLETKSPVTSAEV------SRDGRYITTAD  206 (268)
Q Consensus       146 ~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~----------~~~~~~~~~~~~v~~~~~------s~~g~~l~~~~  206 (268)
                      ++ ...+|.+++ +.+++..-|..|-.||+.+          ...+..+..+..+-.+..      .|+|++|++..
T Consensus       376 GP-LHTaFDg~G-~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n  450 (635)
T PRK02888        376 GP-LHTAFDGRG-NAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN  450 (635)
T ss_pred             Cc-ceEEECCCC-CEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence            23 244666554 5777778889999999976          234444544433333333      68999988754

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.13  E-value=0.00039  Score=60.73  Aligned_cols=172  Identities=17%  Similarity=0.151  Sum_probs=101.0

Q ss_pred             CCeEEEeeCccCcEEEEEecCCCcEEEEee--CC--CcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEE-eeCCCe
Q 024372           51 GDWIGTFEGHKGAVWSCCLDANALFSASGS--AD--FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLT-GGFEKI  125 (268)
Q Consensus        51 ~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s--~D--~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s-~~~d~~  125 (268)
                      |.....+..-...+..-.|+++++.++.-+  ..  ..+.++++.++...........-..-+|+|||+.|+- ...|+.
T Consensus       182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~  261 (425)
T COG0823         182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGS  261 (425)
T ss_pred             CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCC
Confidence            444444443445666778888887654332  22  3588899988887666654444555679999987764 456666


Q ss_pred             EEEE--ECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCe--EEEEeCCCCceEE-eecCCCCEEEEEECCCCc
Q 024372          126 LRIF--DLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG--VRLWDARSGKIVQ-TLETKSPVTSAEVSRDGR  200 (268)
Q Consensus       126 i~~~--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~--i~iwd~~~~~~~~-~~~~~~~v~~~~~s~~g~  200 (268)
                      ..+|  |+....  .....+..+.-..=.|+|++..++.++...|.  |.+.|...+...+ +....... .-.++|||+
T Consensus       262 ~~iy~~dl~~~~--~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~-~p~~SpdG~  338 (425)
T COG0823         262 PDIYLMDLDGKN--LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNS-NPVWSPDGD  338 (425)
T ss_pred             ccEEEEcCCCCc--ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCc-CccCCCCCC
Confidence            5555  655433  22222222222344678999988777766665  5555666555433 22332222 678899999


Q ss_pred             EEEEeC--CCe--EEEEeCCCceeeeEEe
Q 024372          201 YITTAD--GSS--VKFWDANHFGLVKGYN  225 (268)
Q Consensus       201 ~l~~~~--~~~--v~~wd~~~~~~~~~~~  225 (268)
                      +++...  ++.  |.+.|+.....++...
T Consensus       339 ~i~~~~~~~g~~~i~~~~~~~~~~~~~lt  367 (425)
T COG0823         339 KIVFESSSGGQWDIDKNDLASGGKIRILT  367 (425)
T ss_pred             EEEEEeccCCceeeEEeccCCCCcEEEcc
Confidence            886432  343  5566665544333333

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.12  E-value=0.0021  Score=53.70  Aligned_cols=235  Identities=12%  Similarity=0.057  Sum_probs=128.7

Q ss_pred             CCCcEEEEE----------eCCCCeEEeeCCCCCeEEEeeC---ccCcE----EEEEecCCCcEEEEee--CCCcEEEEe
Q 024372           29 PDGFFLVSA----------SKDSSPMLRNGETGDWIGTFEG---HKGAV----WSCCLDANALFSASGS--ADFTAKLWD   89 (268)
Q Consensus        29 ~dg~~l~s~----------s~d~~i~iw~~~~~~~~~~~~~---h~~~V----~~~~~~~~~~~l~s~s--~D~~v~iw~   89 (268)
                      |||+.+.++          -+.-.|.+||..+-+...++.-   |...+    ...+++.++++++.-.  =-..|-|-|
T Consensus        45 pdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVD  124 (342)
T PF06433_consen   45 PDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVD  124 (342)
T ss_dssp             TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEE
T ss_pred             CCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEE
Confidence            588888875          4555678899998877765531   22211    1223445555443221  123455555


Q ss_pred             CCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeE----ecCCcccEE-EEEEeCCCCcEEEEe
Q 024372           90 ALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE----VGNSSGSIR-TVAWLHSDQTILSSC  164 (268)
Q Consensus        90 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~----~~~~~~~v~-~~~~~~~~~~~~~~~  164 (268)
                      +...+.+..+..+......-..+  .-+.+-|.||.+-...+.......+.    +.....++. .-++...+..++-. 
T Consensus       125 l~~~kvv~ei~~PGC~~iyP~~~--~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~-  201 (342)
T PF06433_consen  125 LAAKKVVGEIDTPGCWLIYPSGN--RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFV-  201 (342)
T ss_dssp             TTTTEEEEEEEGTSEEEEEEEET--TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEE-
T ss_pred             CCCCceeeeecCCCEEEEEecCC--CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEE-
Confidence            55555555555555444333333  34777788888887777633221111    111122222 22333333333333 


Q ss_pred             eCCCeEEEEeCCCCce--EEeecC-----------CCCEEEEEECCCC-cEEE-Ee--CC-------CeEEEEeCCCcee
Q 024372          165 TDSGGVRLWDARSGKI--VQTLET-----------KSPVTSAEVSRDG-RYIT-TA--DG-------SSVKFWDANHFGL  220 (268)
Q Consensus       165 ~~d~~i~iwd~~~~~~--~~~~~~-----------~~~v~~~~~s~~g-~~l~-~~--~~-------~~v~~wd~~~~~~  220 (268)
                      +..|.|+--|+.....  ...++.           .+...-+++++.. ++.+ ..  ..       ..|-++|+.+.+.
T Consensus       202 Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~kr  281 (342)
T PF06433_consen  202 SYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKR  281 (342)
T ss_dssp             BTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEE
T ss_pred             ecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeE
Confidence            3558888888865543  222221           1345667887654 4433 22  11       2588889999999


Q ss_pred             eeEEeCCCCceeeEEcCCCCCEEEe-ccCCCeEEEEECCCCcEEeec
Q 024372          221 VKGYNMPCNTESASLEPKLGNIFIA-GGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~-gs~d~~i~~wd~~~g~~~~~~  266 (268)
                      +..+.......++..+.++.-+|++ ...++.+.+||..+|+++...
T Consensus       282 v~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~  328 (342)
T PF06433_consen  282 VARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI  328 (342)
T ss_dssp             EEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred             EEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence            9888876666677777655556655 456899999999999998764

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.10  E-value=0.00021  Score=62.63  Aligned_cols=111  Identities=15%  Similarity=0.157  Sum_probs=74.6

Q ss_pred             EEEEecCCC-cEEE----EeeCCCcEE----EEeCCCCCe----eeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEEC
Q 024372           65 WSCCLDANA-LFSA----SGSADFTAK----LWDALTGDE----KHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDL  131 (268)
Q Consensus        65 ~~~~~~~~~-~~l~----s~s~D~~v~----iw~~~~~~~----~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~  131 (268)
                      ..+.|+... ..+.    +.+.+|.+.    +|++..++.    +..++.+..+.+++++|+...++.|+.||.|.+||.
T Consensus       209 l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~  288 (545)
T PF11768_consen  209 LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDT  288 (545)
T ss_pred             EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEc
Confidence            456666432 2232    334455433    466655543    334567888999999999999999999999999998


Q ss_pred             CCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCc
Q 024372          132 NRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK  179 (268)
Q Consensus       132 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~  179 (268)
                      ..+...   .....-..+.++|.|++. +++.|++.|.+.+||..-..
T Consensus       289 ~~~~t~---~~ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  289 TRGVTL---LAKAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             CCCeee---eeeecccceEEEEcCCCc-EEEEEcCCceEEEEEeecCc
Confidence            654222   112233457789988765 56666777999999987543

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.09  E-value=9e-07  Score=77.60  Aligned_cols=193  Identities=18%  Similarity=0.231  Sum_probs=121.1

Q ss_pred             EEEEEec--CCCcEEEEeeCCCcEEEEeCCCCC-e--eeeeccCCeEEEEEECC-CCCEEEEee----CCCeEEEEECCC
Q 024372           64 VWSCCLD--ANALFSASGSADFTAKLWDALTGD-E--KHSFEHKHIVRACAFSE-DTHLLLTGG----FEKILRIFDLNR  133 (268)
Q Consensus        64 V~~~~~~--~~~~~l~s~s~D~~v~iw~~~~~~-~--~~~~~~~~~v~~v~~~~-~~~~l~s~~----~d~~i~~~d~~~  133 (268)
                      +.+++..  .+..+++.|..+|.|-+-...... .  ..+..+..+.++++|++ |.++||.|.    .|..+.+||+++
T Consensus        59 ~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s  138 (783)
T KOG1008|consen   59 VKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINS  138 (783)
T ss_pred             ceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceeccc
Confidence            4444433  344677889999999887664322 1  22234566889999988 667887763    345689999875


Q ss_pred             C----CCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCC-ceEEeecCCCCEEEEEECC-CCcEEEEeCC
Q 024372          134 P----DAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG-KIVQTLETKSPVTSAEVSR-DGRYITTADG  207 (268)
Q Consensus       134 ~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~-~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~  207 (268)
                      .    ................++|..+.+ ++.+|...+.+.++|+|.. .....+.. ..+..+.+.| .+.|+.+..+
T Consensus       139 ~ltvPke~~~fs~~~l~gqns~cwlrd~k-lvlaGm~sr~~~ifdlRqs~~~~~svnT-k~vqG~tVdp~~~nY~cs~~d  216 (783)
T KOG1008|consen  139 LLTVPKESPLFSSSTLDGQNSVCWLRDTK-LVLAGMTSRSVHIFDLRQSLDSVSSVNT-KYVQGITVDPFSPNYFCSNSD  216 (783)
T ss_pred             ccCCCccccccccccccCccccccccCcc-hhhcccccchhhhhhhhhhhhhhhhhhh-hhcccceecCCCCCceecccc
Confidence            4    111122221223445788885444 5555555589999999832 22222221 2366788899 7888888789


Q ss_pred             CeEEEEe-CCCce-eeeEEeCCC-----CceeeEEcCCCCCEEEeccCC-CeEEEEECC
Q 024372          208 SSVKFWD-ANHFG-LVKGYNMPC-----NTESASLEPKLGNIFIAGGED-MWVHVFDFH  258 (268)
Q Consensus       208 ~~v~~wd-~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~gs~d-~~i~~wd~~  258 (268)
                      +.|-+|| .++.+ ++.......     ....++++|....++++.+.| +.|++||+.
T Consensus       217 g~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  217 GDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             CceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            9999999 44432 222222222     245778888767778887766 479999874

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.08  E-value=0.00023  Score=65.30  Aligned_cols=179  Identities=19%  Similarity=0.227  Sum_probs=120.8

Q ss_pred             CcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeec-cCCeEEEEE
Q 024372           31 GFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACA  109 (268)
Q Consensus        31 g~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~-~~~~v~~v~  109 (268)
                      +..++-|+.-..+...|..+.+..+...--.+.|.-+.  .+++++.+|...|+|.+-|.++.+.++++. |...+..  
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD--  222 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD--  222 (1118)
T ss_pred             CcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceee--
Confidence            44566677777777788888776666544344454443  357888889999999999999999988885 7777755  


Q ss_pred             ECCCCCEEEEeeCC---------CeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCC-Cc
Q 024372          110 FSEDTHLLLTGGFE---------KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS-GK  179 (268)
Q Consensus       110 ~~~~~~~l~s~~~d---------~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~-~~  179 (268)
                      |.-+|++|++++..         ..+++||++.-+... -+..+.++ .-+.|.|.-...++.++..|...+-|..+ ..
T Consensus       223 fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~-PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN  300 (1118)
T KOG1275|consen  223 FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS-PIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN  300 (1118)
T ss_pred             eeccCCeEEEeecccccccccccchhhhhhhhhhhccC-CcccccCc-hhhhhcccccceEEEEecccceeeccccccCC
Confidence            56678899998754         457899987544321 11122222 33556665555555555668999988433 12


Q ss_pred             e---EEeecC-CCCEEEEEECCCCcEEEEeC-CCeEEEEeC
Q 024372          180 I---VQTLET-KSPVTSAEVSRDGRYITTAD-GSSVKFWDA  215 (268)
Q Consensus       180 ~---~~~~~~-~~~v~~~~~s~~g~~l~~~~-~~~v~~wd~  215 (268)
                      .   ++.+.. ...+...+++++|..++.++ ++.|.+|.-
T Consensus       301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence            2   222222 33488999999999998774 789999973

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.05  E-value=0.0011  Score=61.66  Aligned_cols=141  Identities=15%  Similarity=0.135  Sum_probs=94.8

Q ss_pred             CcEEEEE-eCCCCeEEeeCCCCCeEEEeeCccCc-EEEEEecC-----CCcEEEEeeCCCcEEEEeCCCCC--eee----
Q 024372           31 GFFLVSA-SKDSSPMLRNGETGDWIGTFEGHKGA-VWSCCLDA-----NALFSASGSADFTAKLWDALTGD--EKH----   97 (268)
Q Consensus        31 g~~l~s~-s~d~~i~iw~~~~~~~~~~~~~h~~~-V~~~~~~~-----~~~~l~s~s~D~~v~iw~~~~~~--~~~----   97 (268)
                      .++|+-- .....+.-.|++.|+.+..+..|... |..++-..     .......|=.+..+..||.+-..  ++.    
T Consensus       493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k  572 (794)
T PF08553_consen  493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK  572 (794)
T ss_pred             cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence            3444443 33456666799999999999988754 65543211     11122345567889999987533  222    


Q ss_pred             eeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeC
Q 024372           98 SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA  175 (268)
Q Consensus        98 ~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~  175 (268)
                      .+..+....|++-+.+| .+|.|+.+|.||+||- .+..-...+.....+|..|..+.+|.++|++|.  ..|.|.|+
T Consensus       573 ~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~--tyLlLi~t  646 (794)
T PF08553_consen  573 QYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCK--TYLLLIDT  646 (794)
T ss_pred             ccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeec--ceEEEEEE
Confidence            22234456777777777 5788999999999993 333223344455789999999999999999983  68888886

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.03  E-value=0.00036  Score=60.91  Aligned_cols=191  Identities=17%  Similarity=0.185  Sum_probs=110.2

Q ss_pred             eeecEEeeecCCCeeeEEEecCCCCCcEEEEE---eCC-CCeEEeeCCCCC--eEEEeeCccCcEEEEEecCCCcEEE-E
Q 024372            6 VAVPLVCHGHSRPVVDLFYSPITPDGFFLVSA---SKD-SSPMLRNGETGD--WIGTFEGHKGAVWSCCLDANALFSA-S   78 (268)
Q Consensus         6 ~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~---s~d-~~i~iw~~~~~~--~~~~~~~h~~~V~~~~~~~~~~~l~-s   78 (268)
                      .+....+..-...+..-+|+|   +++.++-.   ... ..+.++++.+++  .+.++.++..   .-+|+|||+.++ +
T Consensus       182 g~~~~~l~~~~~~~~~p~ws~---~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~---~P~fspDG~~l~f~  255 (425)
T COG0823         182 GYNQQKLTDSGSLILTPAWSP---DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNG---APAFSPDGSKLAFS  255 (425)
T ss_pred             CcceeEecccCcceeccccCc---CCCceEEEEEecCCCceEEEEeccCCccceeeccCCccC---CccCCCCCCEEEEE
Confidence            344444433344555666765   55554433   233 346778888875  3445555543   346999998764 5


Q ss_pred             eeCCCcEEEE--eCCCCCeeeeeccCCeEE-EEEECCCCCEEEEee-CCCe--EEEEECCCCCCCCeEecCCcccEEEEE
Q 024372           79 GSADFTAKLW--DALTGDEKHSFEHKHIVR-ACAFSEDTHLLLTGG-FEKI--LRIFDLNRPDAPPREVGNSSGSIRTVA  152 (268)
Q Consensus        79 ~s~D~~v~iw--~~~~~~~~~~~~~~~~v~-~v~~~~~~~~l~s~~-~d~~--i~~~d~~~~~~~~~~~~~~~~~v~~~~  152 (268)
                      ...|+...||  |+......+ +.+...+. .=.|+|+|+.++-.+ ..|.  |.+++.+...  .+......+.-..-.
T Consensus       256 ~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~--~~riT~~~~~~~~p~  332 (425)
T COG0823         256 SSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ--VTRLTFSGGGNSNPV  332 (425)
T ss_pred             ECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc--eeEeeccCCCCcCcc
Confidence            6677765555  776655333 44333332 345899999877654 3444  4444554332  233322222222557


Q ss_pred             EeCCCCcEEEEeeCCCe--EEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEe
Q 024372          153 WLHSDQTILSSCTDSGG--VRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA  205 (268)
Q Consensus       153 ~~~~~~~~~~~~~~d~~--i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~  205 (268)
                      |+|++..++..+..+|.  |-+.|+.++..++.+........-.+.|+|+.+...
T Consensus       333 ~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~  387 (425)
T COG0823         333 WSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFS  387 (425)
T ss_pred             CCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEe
Confidence            78988887666644455  666777666655555544445566788899887644

>smart00320 WD40 WD40 repeats

Probab=97.98  E-value=2.7e-05  Score=42.28  Aligned_cols=39  Identities=41%  Similarity=0.675  Sum_probs=34.6

Q ss_pred             CCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEe
Q 024372           51 GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (268)
Q Consensus        51 ~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~   89 (268)
                      ++++..+..|...|.+++|.+++.++++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            345677888999999999999989999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.95  E-value=2.5e-06  Score=74.92  Aligned_cols=162  Identities=15%  Similarity=0.192  Sum_probs=106.4

Q ss_pred             eeecCCCeeeEEEecCCCCCcEEEEE----eCCCCeEEeeCCCC--Ce--EEEeeC-ccCcEEEEEecCCCcEEEEeeCC
Q 024372           12 CHGHSRPVVDLFYSPITPDGFFLVSA----SKDSSPMLRNGETG--DW--IGTFEG-HKGAVWSCCLDANALFSASGSAD   82 (268)
Q Consensus        12 ~~~h~~~v~~~~f~~~~~dg~~l~s~----s~d~~i~iw~~~~~--~~--~~~~~~-h~~~V~~~~~~~~~~~l~s~s~D   82 (268)
                      ..+|..+.++++|++.  |.+.||+|    -.|..+.|||..++  ..  .-.|.+ -.....+++|-.+.+.+.+|...
T Consensus        98 tp~~ar~Ct~lAwneL--Dtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~s  175 (783)
T KOG1008|consen   98 TPGYARPCTSLAWNEL--DTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTS  175 (783)
T ss_pred             cccccccccccccccc--cHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhccccc
Confidence            3578889999999985  67788877    34567899998876  11  112222 33445577888778888889888


Q ss_pred             CcEEEEeCCCCCeeeeeccCCeEEEEEECC-CCCEEEEeeCCCeEEEEE-CCCCCCCCeEecCCcc----cEEEEEEeCC
Q 024372           83 FTAKLWDALTGDEKHSFEHKHIVRACAFSE-DTHLLLTGGFEKILRIFD-LNRPDAPPREVGNSSG----SIRTVAWLHS  156 (268)
Q Consensus        83 ~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d-~~~~~~~~~~~~~~~~----~v~~~~~~~~  156 (268)
                      ..+.++|+.........-....+..+...| .+.++++- .|+.|-+|| .+.-+.+.+.+.+...    .+..++|+|-
T Consensus       176 r~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~-~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPt  254 (783)
T KOG1008|consen  176 RSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSN-SDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPT  254 (783)
T ss_pred             chhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceecc-ccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccC
Confidence            899999986332211111333566677778 67777664 499999999 3332322222222222    3788999987


Q ss_pred             CCcEEEEeeC-CCeEEEEeCC
Q 024372          157 DQTILSSCTD-SGGVRLWDAR  176 (268)
Q Consensus       157 ~~~~~~~~~~-d~~i~iwd~~  176 (268)
                      ..-+++++.. .++|+++|++
T Consensus       255 rtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  255 RTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             CcchhhhhccCcceEEEeccc
Confidence            6556555544 4799999986

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.90  E-value=0.0022  Score=44.52  Aligned_cols=102  Identities=21%  Similarity=0.153  Sum_probs=67.1

Q ss_pred             eeeEEEecCCCCC-cEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeee
Q 024372           19 VVDLFYSPITPDG-FFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKH   97 (268)
Q Consensus        19 v~~~~f~~~~~dg-~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~   97 (268)
                      |+++++.++..|| +.|+.||.|..||+|+-.  +.+.++.- .+.|..++-... ..++.+-.+|+|-+|+-.  ....
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlW   75 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLW   75 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceee
Confidence            6788888766543 679999999999999754  56666664 356666665554 457888899999998752  2223


Q ss_pred             eeccCCeEEEEEE-CCC--C-CEEEEeeCCCeE
Q 024372           98 SFEHKHIVRACAF-SED--T-HLLLTGGFEKIL  126 (268)
Q Consensus        98 ~~~~~~~v~~v~~-~~~--~-~~l~s~~~d~~i  126 (268)
                      ....++.+.++.+ ..+  | .-|++|-.+|.|
T Consensus        76 RiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkv  108 (111)
T PF14783_consen   76 RIKSKNQVTSMAFYDINGDGVPELIVGWSNGKV  108 (111)
T ss_pred             eeccCCCeEEEEEEcCCCCCceEEEEEecCCeE
Confidence            3334444555544 223  2 356777777765

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.85  E-value=0.015  Score=49.90  Aligned_cols=236  Identities=16%  Similarity=0.153  Sum_probs=121.2

Q ss_pred             CCCcEEEEE---------eCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeee
Q 024372           29 PDGFFLVSA---------SKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF   99 (268)
Q Consensus        29 ~dg~~l~s~---------s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~   99 (268)
                      |||++++..         +..+..-++|+.+++...... ....+....|+|++..+|-.. ++.|.+++..++...+.-
T Consensus         2 ~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~-~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT   79 (353)
T PF00930_consen    2 PDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTP-PPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLT   79 (353)
T ss_dssp             TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS--EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESE
T ss_pred             CCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcC-CccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEec
Confidence            577777764         334566788999886554333 356788899999999987764 678999988766433211


Q ss_pred             cc------------------CCeEEEEEECCCCCEEEEeeCC-CeEE---------------------------------
Q 024372          100 EH------------------KHIVRACAFSEDTHLLLTGGFE-KILR---------------------------------  127 (268)
Q Consensus       100 ~~------------------~~~v~~v~~~~~~~~l~s~~~d-~~i~---------------------------------  127 (268)
                      ..                  -..-..+.||||++.|+....| ..++                                 
T Consensus        80 ~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~  159 (353)
T PF00930_consen   80 TDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVS  159 (353)
T ss_dssp             S--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEE
T ss_pred             cccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceE
Confidence            10                  0112467899999888875433 2222                                 


Q ss_pred             --EEECCCCCCCCeEe----cCCcccEEEEEEeCCCCcE-EEEeeCCC---eEEEEeCCCCceEEeec--CCCC---EEE
Q 024372          128 --IFDLNRPDAPPREV----GNSSGSIRTVAWLHSDQTI-LSSCTDSG---GVRLWDARSGKIVQTLE--TKSP---VTS  192 (268)
Q Consensus       128 --~~d~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~-~~~~~~d~---~i~iwd~~~~~~~~~~~--~~~~---v~~  192 (268)
                        ++|+.+++......    ......+..+.|.+++..+ +.....+.   .+.+.|+.++++...+.  ....   -..
T Consensus       160 l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~  239 (353)
T PF00930_consen  160 LFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDP  239 (353)
T ss_dssp             EEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSE
T ss_pred             EEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecc
Confidence              22332222110000    1123346678888777633 33333322   46667887776533221  2111   123


Q ss_pred             EEEC-CCCc-EEEE-eCCC--eEEEEeCCCceeeeEEeCCCCce-eeEEcCCCCCEEEeccCC----CeEEEEECCCCcE
Q 024372          193 AEVS-RDGR-YITT-ADGS--SVKFWDANHFGLVKGYNMPCNTE-SASLEPKLGNIFIAGGED----MWVHVFDFHTGEQ  262 (268)
Q Consensus       193 ~~~s-~~g~-~l~~-~~~~--~v~~wd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~gs~d----~~i~~wd~~~g~~  262 (268)
                      ..+. +++. ++.. ..+|  .|.+.+.........-...-.+. ...+....+.++.+|..+    ..++.-++..+..
T Consensus       240 ~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~  319 (353)
T PF00930_consen  240 PHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGE  319 (353)
T ss_dssp             EEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTE
T ss_pred             cccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCC
Confidence            4443 5554 4433 3444  56666776554222112222232 344455445555566553    3566666662334


Q ss_pred             Eeec
Q 024372          263 IAIT  266 (268)
Q Consensus       263 ~~~~  266 (268)
                      +..+
T Consensus       320 ~~~L  323 (353)
T PF00930_consen  320 PKCL  323 (353)
T ss_dssp             EEES
T ss_pred             eEec
Confidence            4443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.77  E-value=0.0083  Score=57.16  Aligned_cols=197  Identities=17%  Similarity=0.125  Sum_probs=121.4

Q ss_pred             CcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEEC----CCCCCC
Q 024372           62 GAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDL----NRPDAP  137 (268)
Q Consensus        62 ~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~----~~~~~~  137 (268)
                      +.|.++.|-.+..-++-+..+|.|.+-|..+......-.....|.+.+|+||.++++..+.++++-+-+-    -..+..
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L  148 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPL  148 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcccc
Confidence            5788888877766666666788888888887766555556678999999999999998888777654331    110100


Q ss_pred             ------------------CeEecCCc---------------------ccEEEEEEeCCCCcEEEE----eeCCCeEEEEe
Q 024372          138 ------------------PREVGNSS---------------------GSIRTVAWLHSDQTILSS----CTDSGGVRLWD  174 (268)
Q Consensus       138 ------------------~~~~~~~~---------------------~~v~~~~~~~~~~~~~~~----~~~d~~i~iwd  174 (268)
                                        ...+.+..                     +.-+.|.|-.+++.+.++    ..+.+.|++||
T Consensus       149 ~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~d  228 (1265)
T KOG1920|consen  149 DADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYD  228 (1265)
T ss_pred             ccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEec
Confidence                              00111100                     112347887666654432    23337899999


Q ss_pred             CCCCceEEeecCC-CCEEEEEECCCCcEEEEe----CCCeEEEEeCC---CceeeeEEeCCCC-ceeeEEcCCCCCEEEe
Q 024372          175 ARSGKIVQTLETK-SPVTSAEVSRDGRYITTA----DGSSVKFWDAN---HFGLVKGYNMPCN-TESASLEPKLGNIFIA  245 (268)
Q Consensus       175 ~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~----~~~~v~~wd~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  245 (268)
                      -+ |..-.+-... ..-.+++|-|.|..+++-    +++.|.+|.-.   .++-.-.+..... +..+.|.. +++.|+.
T Consensus       229 rE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns-~sdiLAv  306 (1265)
T KOG1920|consen  229 RE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNS-NSDILAV  306 (1265)
T ss_pred             cc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecC-CCCceee
Confidence            76 4322211111 223578999999888763    45679888742   2221222333333 55677776 5888887


Q ss_pred             ---ccCCCeEEEEECCCC
Q 024372          246 ---GGEDMWVHVFDFHTG  260 (268)
Q Consensus       246 ---gs~d~~i~~wd~~~g  260 (268)
                         ..+...|++|-+.+.
T Consensus       307 ~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  307 VTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             eecccccceEEEEEecCe
Confidence               666778999987653

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.76  E-value=0.0074  Score=53.06  Aligned_cols=145  Identities=13%  Similarity=0.158  Sum_probs=78.1

Q ss_pred             EeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEE-ECCCC
Q 024372           56 TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIF-DLNRP  134 (268)
Q Consensus        56 ~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~-d~~~~  134 (268)
                      .+....-....++++|++++++. +.||.-.|+..........    ..-....|.+.+ .+|+-...+.|+++ +... 
T Consensus        27 ~lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~----G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~-   99 (443)
T PF04053_consen   27 ELGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF----GSGLSFVWSSRN-RYAVLESSSTIKIYKNFKN-   99 (443)
T ss_dssp             EEEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE----EE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-
T ss_pred             cCCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc----CceeEEEEecCc-cEEEEECCCeEEEEEcCcc-
Confidence            34334455778999999998766 4577777777433333222    223345677744 46666668889996 4322 


Q ss_pred             CCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEeCCCeEEEEe
Q 024372          135 DAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWD  214 (268)
Q Consensus       135 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~~wd  214 (268)
                      +. ...+.. ...+..+  +. |. ++...++ +.|.+||+.+++.+..+... +|..+.|+++|.+++...+..+.+.+
T Consensus       100 ~~-~k~i~~-~~~~~~I--f~-G~-LL~~~~~-~~i~~yDw~~~~~i~~i~v~-~vk~V~Ws~~g~~val~t~~~i~il~  171 (443)
T PF04053_consen  100 EV-VKSIKL-PFSVEKI--FG-GN-LLGVKSS-DFICFYDWETGKLIRRIDVS-AVKYVIWSDDGELVALVTKDSIYILK  171 (443)
T ss_dssp             -T-T------SS-EEEE--E--SS-SEEEEET-TEEEEE-TTT--EEEEESS--E-EEEEE-TTSSEEEEE-S-SEEEEE
T ss_pred             cc-ceEEcC-CcccceE--Ec-Cc-EEEEECC-CCEEEEEhhHcceeeEEecC-CCcEEEEECCCCEEEEEeCCeEEEEE
Confidence            11 111111 1123332  33 44 4444444 58999999999999999864 38999999999998876666777765


Q ss_pred             C
Q 024372          215 A  215 (268)
Q Consensus       215 ~  215 (268)
                      .
T Consensus       172 ~  172 (443)
T PF04053_consen  172 Y  172 (443)
T ss_dssp             E
T ss_pred             e
Confidence            4

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.74  E-value=0.011  Score=54.47  Aligned_cols=187  Identities=17%  Similarity=0.251  Sum_probs=104.6

Q ss_pred             EecCCCcEEEEeeCCCcEEEEeCCCCCeeeeec-cCCe-EEEEEECCCCCEEEEeeCCC-----eEEEEECCCCC--CCC
Q 024372           68 CLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHI-VRACAFSEDTHLLLTGGFEK-----ILRIFDLNRPD--APP  138 (268)
Q Consensus        68 ~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~-~~~~-v~~v~~~~~~~~l~s~~~d~-----~i~~~d~~~~~--~~~  138 (268)
                      ++++.+..+|-|+.||.|-+.+-. .+..+.+. ++.. |..+..-.+...|++.+.|.     .+++|+++..+  .++
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP  108 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP  108 (933)
T ss_pred             EEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence            457778888999999988776632 12213332 2222 44343233335666655443     58999986431  101


Q ss_pred             e------Eec----CCcccEEEEEEeCCCCcEEEEeeCCCeEEEEe--C-CC-C-ceEEeecCCCCEEEEEECCCCcE-E
Q 024372          139 R------EVG----NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD--A-RS-G-KIVQTLETKSPVTSAEVSRDGRY-I  202 (268)
Q Consensus       139 ~------~~~----~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd--~-~~-~-~~~~~~~~~~~v~~~~~s~~g~~-l  202 (268)
                      +      ...    ....++.+++.+.+ -..++.|..+|.|..+-  + |. + +.........+|..+++..+++. +
T Consensus       109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~-l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l  187 (933)
T KOG2114|consen  109 QCLYEHRIFTIKNPTNPSPASSLAVSED-LKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL  187 (933)
T ss_pred             ceeeeeeeeccCCCCCCCcceEEEEEcc-ccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence            1      111    12345667776554 45677788889988873  2 11 1 22233445678999999988876 4


Q ss_pred             EEeCCCeEEEEeCCCcee-eeEEeCCC-CceeeEEcCCCCCEEEeccCCCeEEEEECC
Q 024372          203 TTADGSSVKFWDANHFGL-VKGYNMPC-NTESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (268)
Q Consensus       203 ~~~~~~~v~~wd~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~  258 (268)
                      ..+.-..|.+|.+....+ ++....+. ......+++..++ |++|+.. .+++|+..
T Consensus       188 Fv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~q-fIca~~e-~l~fY~sd  243 (933)
T KOG2114|consen  188 FVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQ-FICAGSE-FLYFYDSD  243 (933)
T ss_pred             EEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCcc-EEEecCc-eEEEEcCC
Confidence            445556899999875442 23333322 2233344443333 5544433 38888875

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.70  E-value=0.022  Score=50.14  Aligned_cols=220  Identities=14%  Similarity=0.144  Sum_probs=106.8

Q ss_pred             ecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCC
Q 024372           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG   93 (268)
Q Consensus        14 ~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~   93 (268)
                      ...-....+.++|   +|+.++. ..||.-.|+.....+-...     +.-....|.+.+++ |.-....+|+++.-...
T Consensus        30 ~~~~~p~~ls~np---ngr~v~V-~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n~y-Av~~~~~~I~I~kn~~~   99 (443)
T PF04053_consen   30 SCEIYPQSLSHNP---NGRFVLV-CGDGEYEIYTALAWRNKAF-----GSGLSFVWSSRNRY-AVLESSSTIKIYKNFKN   99 (443)
T ss_dssp             E-SS--SEEEE-T---TSSEEEE-EETTEEEEEETTTTEEEEE-----EE-SEEEE-TSSEE-EEE-TTS-EEEEETTEE
T ss_pred             CCCcCCeeEEECC---CCCEEEE-EcCCEEEEEEccCCccccc-----CceeEEEEecCccE-EEEECCCeEEEEEcCcc
Confidence            3444677999996   7777766 7777777777444333222     23344568876664 55555888999743233


Q ss_pred             CeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEE
Q 024372           94 DEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLW  173 (268)
Q Consensus        94 ~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iw  173 (268)
                      .....+..+..+..+- .  |.+|+..+.+ .|.+||+.+.+ ..+.+..  .++..+.|++++..+++.+ + ..+.|+
T Consensus       100 ~~~k~i~~~~~~~~If-~--G~LL~~~~~~-~i~~yDw~~~~-~i~~i~v--~~vk~V~Ws~~g~~val~t-~-~~i~il  170 (443)
T PF04053_consen  100 EVVKSIKLPFSVEKIF-G--GNLLGVKSSD-FICFYDWETGK-LIRRIDV--SAVKYVIWSDDGELVALVT-K-DSIYIL  170 (443)
T ss_dssp             -TT-----SS-EEEEE----SSSEEEEETT-EEEEE-TTT---EEEEESS---E-EEEEE-TTSSEEEEE--S--SEEEE
T ss_pred             ccceEEcCCcccceEE-c--CcEEEEECCC-CEEEEEhhHcc-eeeEEec--CCCcEEEEECCCCEEEEEe-C-CeEEEE
Confidence            3323343333344442 2  7777766544 89999998653 3344432  2478999998877665554 4 577787


Q ss_pred             eCCCC-----------ceEEee-cCCCCEEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCC
Q 024372          174 DARSG-----------KIVQTL-ETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGN  241 (268)
Q Consensus       174 d~~~~-----------~~~~~~-~~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (268)
                      +....           ..+..+ +....|.+..|..+ -++-+... .++++=......++.+.  .....+...+. ..
T Consensus       171 ~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~~-~lkYl~~Ge~~~i~~ld--~~~yllgy~~~-~~  245 (443)
T PF04053_consen  171 KYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTTSN-HLKYLVNGETGIIAHLD--KPLYLLGYLPK-EN  245 (443)
T ss_dssp             EE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-TT-EEEEEETTEEEEEEE-S--S--EEEEEETT-TT
T ss_pred             EecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEcCC-eEEEEEcCCcceEEEcC--CceEEEEEEcc-CC
Confidence            65433           123322 22456888999888 55556555 78774433333333332  23334444442 23


Q ss_pred             EEEeccCCCeEEEEEC
Q 024372          242 IFIAGGEDMWVHVFDF  257 (268)
Q Consensus       242 ~~~~gs~d~~i~~wd~  257 (268)
                      .+...-.|..|..+.+
T Consensus       246 ~ly~~Dr~~~v~~~~l  261 (443)
T PF04053_consen  246 RLYLIDRDGNVISYEL  261 (443)
T ss_dssp             EEEEE-TT--EEEEE-
T ss_pred             EEEEEECCCCEEEEEE
Confidence            4555555555655544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.68  E-value=0.027  Score=48.03  Aligned_cols=238  Identities=18%  Similarity=0.234  Sum_probs=109.9

Q ss_pred             eEEE--ecCCCCCc-EEEEEeCCCCeEEe--eCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCe
Q 024372           21 DLFY--SPITPDGF-FLVSASKDSSPMLR--NGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE   95 (268)
Q Consensus        21 ~~~f--~~~~~dg~-~l~s~s~d~~i~iw--~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~   95 (268)
                      .+.|  ++.++||+ +|+.+..|+.-.+|  |+.+++..+--.+-........+++++..++-......|+--|+.+.+.
T Consensus        35 ~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~  114 (386)
T PF14583_consen   35 RLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEE  114 (386)
T ss_dssp             ---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--E
T ss_pred             ceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcE
Confidence            4555  33557884 55555557766665  7888875543332212233345678887776666667888889999887


Q ss_pred             eeeeccC-CeEEEEEE--CCCCCEEEEeeC---CC-------------------eEEEEECCCCCCCCeEecCCcccEEE
Q 024372           96 KHSFEHK-HIVRACAF--SEDTHLLLTGGF---EK-------------------ILRIFDLNRPDAPPREVGNSSGSIRT  150 (268)
Q Consensus        96 ~~~~~~~-~~v~~v~~--~~~~~~l~s~~~---d~-------------------~i~~~d~~~~~~~~~~~~~~~~~v~~  150 (268)
                      ...+..+ ..+....|  +.++..++-.-.   |.                   .|..-|+.+++  ...+......+..
T Consensus       115 ~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~--~~~v~~~~~wlgH  192 (386)
T PF14583_consen  115 RVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE--RKVVFEDTDWLGH  192 (386)
T ss_dssp             EEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT----EEEEEEESS-EEE
T ss_pred             EEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc--eeEEEecCccccC
Confidence            6665533 33333334  445555432210   00                   12222443332  2222233456778


Q ss_pred             EEEeCCCCcEEEEeeCC---C-eEEEEeCCC-CceEEeecCCCC---EEEEEECCCCcEEEE-e-----CCCeEEEEeCC
Q 024372          151 VAWLHSDQTILSSCTDS---G-GVRLWDARS-GKIVQTLETKSP---VTSAEVSRDGRYITT-A-----DGSSVKFWDAN  216 (268)
Q Consensus       151 ~~~~~~~~~~~~~~~~d---~-~i~iwd~~~-~~~~~~~~~~~~---v~~~~~s~~g~~l~~-~-----~~~~v~~wd~~  216 (268)
                      +.++|.++.+++-|-+.   . .-|||-+++ +..++.+..+.+   +.-=.|.|||..+.= +     .+..|.-.|+.
T Consensus       193 ~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~  272 (386)
T PF14583_consen  193 VQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPD  272 (386)
T ss_dssp             EEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TT
T ss_pred             cccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCC
Confidence            89999999998887552   1 237786643 444444433222   233347899976531 1     13457777887


Q ss_pred             CceeeeEEeCCCCceeeEE-cCCCCCEEEeccCC----------------CeEEEEECCCCcEE
Q 024372          217 HFGLVKGYNMPCNTESASL-EPKLGNIFIAGGED----------------MWVHVFDFHTGEQI  263 (268)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~gs~d----------------~~i~~wd~~~g~~~  263 (268)
                      +.+.......+   .+..+ +..+|++||-=|.|                -.|++++++.++..
T Consensus       273 t~~~~~~~~~p---~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~  333 (386)
T PF14583_consen  273 TGERRRLMEMP---WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFR  333 (386)
T ss_dssp             T--EEEEEEE----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEE
T ss_pred             CCCceEEEeCC---ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCcee
Confidence            76543333332   22222 33478888753333                26888888877654

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.65  E-value=0.035  Score=48.59  Aligned_cols=240  Identities=16%  Similarity=0.113  Sum_probs=122.7

Q ss_pred             eEEEecCCCCCcEEEEE-eCCC----CeEEeeCCCCCeEEE-eeCccCcEEEEEecCCCcEEEEeeC-----------CC
Q 024372           21 DLFYSPITPDGFFLVSA-SKDS----SPMLRNGETGDWIGT-FEGHKGAVWSCCLDANALFSASGSA-----------DF   83 (268)
Q Consensus        21 ~~~f~~~~~dg~~l~s~-s~d~----~i~iw~~~~~~~~~~-~~~h~~~V~~~~~~~~~~~l~s~s~-----------D~   83 (268)
                      .+.+..++|||++||-+ +..|    ++++.|+.+|+.+.. +..-..  ..+.|.+++..+.....           ..
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~--~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~  202 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKF--SSVSWSDDGKGFFYTRFDEDQRTSDSGYPR  202 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEES--EEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccccc--ceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence            34333445799988866 4444    488999999986643 232111  12889999776544432           23


Q ss_pred             cEEEEeCCCCCee--eeec--cCCe-EEEEEECCCCCEEEEee---CC-CeEEEEECCCC---CCCCeEecC-CcccEEE
Q 024372           84 TAKLWDALTGDEK--HSFE--HKHI-VRACAFSEDTHLLLTGG---FE-KILRIFDLNRP---DAPPREVGN-SSGSIRT  150 (268)
Q Consensus        84 ~v~iw~~~~~~~~--~~~~--~~~~-v~~v~~~~~~~~l~s~~---~d-~~i~~~d~~~~---~~~~~~~~~-~~~~v~~  150 (268)
                      .|+.|++.+....  ..++  .... ...+..++++++++...   .+ ..+.+.|+...   ......+.. ..+....
T Consensus       203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~  282 (414)
T PF02897_consen  203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY  282 (414)
T ss_dssp             EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE
T ss_pred             EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE
Confidence            4788888776543  3333  2223 55678899999877532   22 45677787653   222233322 2333333


Q ss_pred             EEEeCCCCcEEEEe--eCCCeEEEEeCCCCce---E-EeecCCCC--EEEEEECCCCcEEEEeCC--CeEEEEeCCCcee
Q 024372          151 VAWLHSDQTILSSC--TDSGGVRLWDARSGKI---V-QTLETKSP--VTSAEVSRDGRYITTADG--SSVKFWDANHFGL  220 (268)
Q Consensus       151 ~~~~~~~~~~~~~~--~~d~~i~iwd~~~~~~---~-~~~~~~~~--v~~~~~s~~g~~l~~~~~--~~v~~wd~~~~~~  220 (268)
                      +... .+..++.+.  ...+.|.--++.....   . -.+.+...  +..+....+.-++..-.+  ..|+++|+.....
T Consensus       283 v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~  361 (414)
T PF02897_consen  283 VDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKE  361 (414)
T ss_dssp             EEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEE
T ss_pred             EEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcE
Confidence            4333 333334442  1224566667776542   2 22333332  444444333322222233  4789999983344


Q ss_pred             eeEEeCCCCce--eeEEcCCCCCEEEeccC---CCeEEEEECCCCcEE
Q 024372          221 VKGYNMPCNTE--SASLEPKLGNIFIAGGE---DMWVHVFDFHTGEQI  263 (268)
Q Consensus       221 ~~~~~~~~~~~--~~~~~~~~~~~~~~gs~---d~~i~~wd~~~g~~~  263 (268)
                      ......+....  .....+....+++..+.   =..++.||+.+|+.-
T Consensus       362 ~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~  409 (414)
T PF02897_consen  362 SREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT  409 (414)
T ss_dssp             EEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred             EeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence            44455443332  22223434555554432   467999999988853

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.61  E-value=0.0037  Score=58.20  Aligned_cols=137  Identities=16%  Similarity=0.181  Sum_probs=90.2

Q ss_pred             EEEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEEECCC-------CCEEEEeeCCCeEEEEECCCCCCCCeE----ecCC
Q 024372           76 SASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSED-------THLLLTGGFEKILRIFDLNRPDAPPRE----VGNS  144 (268)
Q Consensus        76 l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~-------~~~l~s~~~d~~i~~~d~~~~~~~~~~----~~~~  144 (268)
                      |........|+-.|+++++.+..+....-+....+.|+       ..-.+.|-.++.+..||++-.......    ....
T Consensus       497 l~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~  576 (794)
T PF08553_consen  497 LLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSS  576 (794)
T ss_pred             eecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccccccc
Confidence            34445667888999999999998875443333344442       223456777888999998754321111    1122


Q ss_pred             cccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCce-EEeecC-CCCEEEEEECCCCcEEEEeCCCeEEEEeC
Q 024372          145 SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI-VQTLET-KSPVTSAEVSRDGRYITTADGSSVKFWDA  215 (268)
Q Consensus       145 ~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~-~~~~~~-~~~v~~~~~s~~g~~l~~~~~~~v~~wd~  215 (268)
                      .....|++-..+ ++ ++.|+.+|.||+|| +.|.. ...++. ..+|..+.++.||+++++.-+..+.+.+.
T Consensus       577 ~~~Fs~~aTt~~-G~-iavgs~~G~IRLyd-~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t  646 (794)
T PF08553_consen  577 KNNFSCFATTED-GY-IAVGSNKGDIRLYD-RLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDT  646 (794)
T ss_pred             CCCceEEEecCC-ce-EEEEeCCCcEEeec-ccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence            345667775544 44 44566779999999 44433 233443 57899999999999998887788888885

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.56  E-value=0.057  Score=48.48  Aligned_cols=193  Identities=16%  Similarity=0.149  Sum_probs=106.4

Q ss_pred             cEEEEEeCCCCeEEeeCCCCCeEEEeeCccC------cEE--EEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeeccCC
Q 024372           32 FFLVSASKDSSPMLRNGETGDWIGTFEGHKG------AVW--SCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKH  103 (268)
Q Consensus        32 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~------~V~--~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~  103 (268)
                      ..+..++.++.+.-.|..+|+.+=+++....      .+.  .+++. ++..+..++.++.|+-+|..+++.+-.+....
T Consensus        62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~  140 (488)
T cd00216          62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNND  140 (488)
T ss_pred             CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence            3567788889999899999986544332211      111  11121 22455667789999999999999877765332


Q ss_pred             eE---EEEEECC--CCCEEEEee---------CCCeEEEEECCCCCCCCeEecCCc-------------------ccEE-
Q 024372          104 IV---RACAFSE--DTHLLLTGG---------FEKILRIFDLNRPDAPPREVGNSS-------------------GSIR-  149 (268)
Q Consensus       104 ~v---~~v~~~~--~~~~l~s~~---------~d~~i~~~d~~~~~~~~~~~~~~~-------------------~~v~-  149 (268)
                      .+   ..+.-+|  .+.+++.++         .++.+.-+|..+++...+......                   +.+. 
T Consensus       141 ~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~  220 (488)
T cd00216         141 QVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWA  220 (488)
T ss_pred             CcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccC
Confidence            21   0011122  123455543         356778888877665443322110                   0010 


Q ss_pred             EEEEeCCCCcEEEEeeCCC------------------eEEEEeCCCCceEEeecCCC-CE------EEEEEC----CCCc
Q 024372          150 TVAWLHSDQTILSSCTDSG------------------GVRLWDARSGKIVQTLETKS-PV------TSAEVS----RDGR  200 (268)
Q Consensus       150 ~~~~~~~~~~~~~~~~~d~------------------~i~iwd~~~~~~~~~~~~~~-~v------~~~~~s----~~g~  200 (268)
                      ..++.+.+..+++. +.++                  .|.-.|.++|+.+-.++... ..      ....+.    -+|.
T Consensus       221 ~pa~d~~~g~V~vg-~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~  299 (488)
T cd00216         221 SPTYDPKTNLVYVG-TGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGK  299 (488)
T ss_pred             CeeEeCCCCEEEEE-CCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCC
Confidence            12223334444444 3333                  78889999999987764211 00      001111    2333


Q ss_pred             ---EEE-EeCCCeEEEEeCCCceeeeEEeC
Q 024372          201 ---YIT-TADGSSVKFWDANHFGLVKGYNM  226 (268)
Q Consensus       201 ---~l~-~~~~~~v~~wd~~~~~~~~~~~~  226 (268)
                         ++. ++.++.+...|.++++.+-.+..
T Consensus       300 ~~~~V~~g~~~G~l~ald~~tG~~~W~~~~  329 (488)
T cd00216         300 PVPAIVHAPKNGFFYVLDRTTGKLISARPE  329 (488)
T ss_pred             eeEEEEEECCCceEEEEECCCCcEeeEeEe
Confidence               333 44578899999999988766543

The alignment model contains an 8-bladed beta-propeller.

>PHA02713 hypothetical protein; Provisional

Probab=97.52  E-value=0.0081  Score=54.71  Aligned_cols=214  Identities=11%  Similarity=0.026  Sum_probs=98.4

Q ss_pred             CeEEeeCCCCCeEE--EeeCccCcEEEEEecCCCcEEEEeeCC------CcEEEEeCCCCCeeeeeccCCe-EEEEEECC
Q 024372           42 SPMLRNGETGDWIG--TFEGHKGAVWSCCLDANALFSASGSAD------FTAKLWDALTGDEKHSFEHKHI-VRACAFSE  112 (268)
Q Consensus        42 ~i~iw~~~~~~~~~--~~~~h~~~V~~~~~~~~~~~l~s~s~D------~~v~iw~~~~~~~~~~~~~~~~-v~~v~~~~  112 (268)
                      .+..||..++++..  .+...... .+++ ..++.+.+.||.+      ..+..+|..++.-....+-+.+ -......-
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a-~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~  350 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIIN-YASA-IVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI  350 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccc-eEEE-EECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE
Confidence            45678888887653  22211111 1222 2356666777754      2356677765532111110111 01111123


Q ss_pred             CCCEEEEeeCCC-----eEEEEECCCCCCCC-eEecCCcccEEEEEEeCCCCcEEEEeeCC-------------------
Q 024372          113 DTHLLLTGGFEK-----ILRIFDLNRPDAPP-REVGNSSGSIRTVAWLHSDQTILSSCTDS-------------------  167 (268)
Q Consensus       113 ~~~~l~s~~~d~-----~i~~~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~d-------------------  167 (268)
                      ++++.+.|+.++     .+..||..+..... ............+.  -++ .+.+.|+.+                   
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g-~IYviGG~~~~~~~~~~~~~~~~~~~~~  427 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQ-YIYIIGGRTEHIDYTSVHHMNSIDMEED  427 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--ECC-EEEEEeCCCccccccccccccccccccc
Confidence            577777887654     36778876432110 00111111111112  133 344433332                   


Q ss_pred             ----CeEEEEeCCCCceE--EeecCCCCEEEEEECCCCcEEEEeCC------CeEEEEeCCC---ceeeeEEeCCCCcee
Q 024372          168 ----GGVRLWDARSGKIV--QTLETKSPVTSAEVSRDGRYITTADG------SSVKFWDANH---FGLVKGYNMPCNTES  232 (268)
Q Consensus       168 ----~~i~iwd~~~~~~~--~~~~~~~~v~~~~~s~~g~~l~~~~~------~~v~~wd~~~---~~~~~~~~~~~~~~~  232 (268)
                          +.+..||+++.+=.  ..+.....-.+++...+.-|+++|.+      ..+..||.++   +..+.....+.....
T Consensus       428 ~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~  507 (557)
T PHA02713        428 THSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALH  507 (557)
T ss_pred             ccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccce
Confidence                24677887765421  11211111112232233334555432      2467888875   333333322222222


Q ss_pred             eEEcCCCCCEEEeccCCC--eEEEEECCCCcE
Q 024372          233 ASLEPKLGNIFIAGGEDM--WVHVFDFHTGEQ  262 (268)
Q Consensus       233 ~~~~~~~~~~~~~gs~d~--~i~~wd~~~g~~  262 (268)
                      .+..  +|+++++||.|+  .+..||..+++-
T Consensus       508 ~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W  537 (557)
T PHA02713        508 TILH--DNTIMMLHCYESYMLQDTFNVYTYEW  537 (557)
T ss_pred             eEEE--CCEEEEEeeecceeehhhcCcccccc
Confidence            2222  589999999888  788999877653

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.51  E-value=0.023  Score=46.10  Aligned_cols=186  Identities=17%  Similarity=0.256  Sum_probs=108.6

Q ss_pred             EEecCCCCCcEEEEEeCC-----CCeEEeeCCCC-CeEEEeeCccCcEEEEEecCCCcEEEEeeC------C-C------
Q 024372           23 FYSPITPDGFFLVSASKD-----SSPMLRNGETG-DWIGTFEGHKGAVWSCCLDANALFSASGSA------D-F------   83 (268)
Q Consensus        23 ~f~~~~~dg~~l~s~s~d-----~~i~iw~~~~~-~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~------D-~------   83 (268)
                      .|+   +||.+|...-+|     |.|-|||...+ ..+.++..|.-.-..+.+.+||..++-+..      | +      
T Consensus       120 vfs---~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNl  196 (366)
T COG3490         120 VFS---PDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNL  196 (366)
T ss_pred             ccC---CCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccch
Confidence            466   599999877555     45678988754 467888888777778889999998765532      0 1      


Q ss_pred             -----cEEEEeCCCCCeee--eec---cCCeEEEEEECCCCCEEEEeeCCCeEEEE----ECCCCCCCCeEecC------
Q 024372           84 -----TAKLWDALTGDEKH--SFE---HKHIVRACAFSEDTHLLLTGGFEKILRIF----DLNRPDAPPREVGN------  143 (268)
Q Consensus        84 -----~v~iw~~~~~~~~~--~~~---~~~~v~~v~~~~~~~~l~s~~~d~~i~~~----d~~~~~~~~~~~~~------  143 (268)
                           .+.+-|..+++.+.  ++.   +...++.+...+|+.+.+.+-+.|.-.=+    -...+....+.+..      
T Consensus       197 dsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~  276 (366)
T COG3490         197 DSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTA  276 (366)
T ss_pred             hhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHH
Confidence                 12222222333222  111   33468888888888877665444431100    00000011111110      


Q ss_pred             -CcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEeCCCeEEEE
Q 024372          144 -SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFW  213 (268)
Q Consensus       144 -~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~~w  213 (268)
                       ....|-+|+.+...+.+.+++-..+...+||..+|+.+..-.. ..+..++....| |.+++.++.++++
T Consensus       277 ~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l-~daaGva~~~~g-f~vssg~G~~~~~  345 (366)
T COG3490         277 AFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAAL-PDAAGVAAAKGG-FAVSSGQGRIIFY  345 (366)
T ss_pred             HHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccc-cccccceeccCc-eEEecCCceEEec
Confidence             1234667777777788888887778999999999998764332 122333333344 5566666677665

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.51  E-value=0.017  Score=52.68  Aligned_cols=228  Identities=14%  Similarity=0.100  Sum_probs=114.1

Q ss_pred             CCcEEEEEeCCC------CeEEeeCCCCCeEEEeeCccC-cEEEEEecCCCcEEEEeeCC------CcEEEEeCCCCCee
Q 024372           30 DGFFLVSASKDS------SPMLRNGETGDWIGTFEGHKG-AVWSCCLDANALFSASGSAD------FTAKLWDALTGDEK   96 (268)
Q Consensus        30 dg~~l~s~s~d~------~i~iw~~~~~~~~~~~~~h~~-~V~~~~~~~~~~~l~s~s~D------~~v~iw~~~~~~~~   96 (268)
                      .+.+++.|+.+.      ++..+|..++++.....-... ...++++ .++.+.+.||.|      .++..||..+++=.
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~-~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~  362 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAV-LNGKLYVVGGYDSGSDRLSSVERYDPRTNQWT  362 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEE-ECCEEEEEccccCCCcccceEEEecCCCCcee
Confidence            456677777773      556789888876543322222 1223333 345677889988      34556676655411


Q ss_pred             eeec--cC-CeEEEEEECCCCCEEEEeeCCCe-----EEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCC-
Q 024372           97 HSFE--HK-HIVRACAFSEDTHLLLTGGFEKI-----LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS-  167 (268)
Q Consensus        97 ~~~~--~~-~~v~~v~~~~~~~~l~s~~~d~~-----i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d-  167 (268)
                      ...+  .. .....+  .-+|.+.+.|+.|+.     +-.||..+.+...... ... .........-++.+.+.|+.+ 
T Consensus       363 ~~a~M~~~R~~~~v~--~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~-~r~~~gv~~~~g~iYi~GG~~~  438 (571)
T KOG4441|consen  363 PVAPMNTKRSDFGVA--VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLT-RRSGHGVAVLGGKLYIIGGGDG  438 (571)
T ss_pred             ccCCccCccccceeE--EECCEEEEEeccccccccccEEEecCCCCcccccCC-CCc-ceeeeEEEEECCEEEEEcCcCC
Confidence            1111  00 011111  226778888998865     4466655432211110 111 122222222234455555433 


Q ss_pred             -----CeEEEEeCCCCceEEeecC--CCCEEEEEECCCCcEEEEeCCC-----eEEEEeCCCceeeeEEeCCCCceeeEE
Q 024372          168 -----GGVRLWDARSGKIVQTLET--KSPVTSAEVSRDGRYITTADGS-----SVKFWDANHFGLVKGYNMPCNTESASL  235 (268)
Q Consensus       168 -----~~i~iwd~~~~~~~~~~~~--~~~v~~~~~s~~g~~l~~~~~~-----~v~~wd~~~~~~~~~~~~~~~~~~~~~  235 (268)
                           +.+..||..+.+-...-+.  ...-..++.-.+.-|+++|.++     .|..+|.++......-..+........
T Consensus       439 ~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~  518 (571)
T KOG4441|consen  439 SSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGV  518 (571)
T ss_pred             CccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccE
Confidence                 3578888887764332222  1122234444444455555433     478888876543322222222222222


Q ss_pred             cCCCCCEEEeccCCC-----eEEEEECCCCcE
Q 024372          236 EPKLGNIFIAGGEDM-----WVHVFDFHTGEQ  262 (268)
Q Consensus       236 ~~~~~~~~~~gs~d~-----~i~~wd~~~g~~  262 (268)
                      ..-.+..+++||.|+     .|..||..+++-
T Consensus       519 ~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W  550 (571)
T KOG4441|consen  519 VVLGGKLYAVGGFDGNNNLNTVECYDPETDTW  550 (571)
T ss_pred             EEECCEEEEEecccCccccceeEEcCCCCCce
Confidence            222588899998874     577787766553

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.50  E-value=0.00074  Score=59.77  Aligned_cols=91  Identities=11%  Similarity=0.043  Sum_probs=71.4

Q ss_pred             cEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeec-cCCeEE-EEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeE
Q 024372           63 AVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVR-ACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE  140 (268)
Q Consensus        63 ~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~-~~~~v~-~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~  140 (268)
                      .|..+.|.|.-.++|.+-.+|.+-+..++ .+.+.+++ +...++ +++|.|||+.++.|-.||+|++-|++++......
T Consensus        22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~  100 (665)
T KOG4640|consen   22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSF  100 (665)
T ss_pred             ceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceecc
Confidence            46667899998999999999988888887 66677777 666776 9999999999999999999999999887654443


Q ss_pred             ecCCcccEEEEEEe
Q 024372          141 VGNSSGSIRTVAWL  154 (268)
Q Consensus       141 ~~~~~~~v~~~~~~  154 (268)
                      .-.....|.++-|.
T Consensus       101 ~~s~e~~is~~~w~  114 (665)
T KOG4640|consen  101 LFSVETDISKGIWD  114 (665)
T ss_pred             ccccccchheeecc
Confidence            22334456666664

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.46  E-value=0.0014  Score=60.15  Aligned_cols=187  Identities=17%  Similarity=0.218  Sum_probs=110.7

Q ss_pred             EecCCCcEEEEee----CCCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecC
Q 024372           68 CLDANALFSASGS----ADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN  143 (268)
Q Consensus        68 ~~~~~~~~l~s~s----~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~  143 (268)
                      +|+|...++|.++    +.|.|.|+- .++.+.+...-+-.+.+++|+|..-+|+.|-.-|.+.+|..++.+ .......
T Consensus        22 SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e-~htv~~t   99 (1416)
T KOG3617|consen   22 SWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE-THTVVET   99 (1416)
T ss_pred             ccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCce-eeeeccC
Confidence            5666666665443    457777773 244444443333345679999999899999999999999876533 2334456


Q ss_pred             CcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEee---cC--CCC--EEEEEECCCCc-------EEEEeCCCe
Q 024372          144 SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL---ET--KSP--VTSAEVSRDGR-------YITTADGSS  209 (268)
Q Consensus       144 ~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~---~~--~~~--v~~~~~s~~g~-------~l~~~~~~~  209 (268)
                      |..++.-+.|+|+|.. +.++..-|.+.+|.......++..   ++  ...  ..+.-+++++.       ..+++++..
T Consensus       100 h~a~i~~l~wS~~G~~-l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~a  178 (1416)
T KOG3617|consen  100 HPAPIQGLDWSHDGTV-LMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESA  178 (1416)
T ss_pred             CCCCceeEEecCCCCe-EEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhh
Confidence            7889999999998765 556666799999976533323322   22  112  23334566641       223344433


Q ss_pred             EE-EEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEeec
Q 024372          210 VK-FWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       210 v~-~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~~  266 (268)
                      +- .++.+..  .     ......-.-.+ .|..|..++.+|.||--| .+|..+.++
T Consensus       179 lD~~fnwk~~--~-----a~rs~~ksgv~-~g~~F~~~~~~GtVyyvd-q~g~~~~V~  227 (1416)
T KOG3617|consen  179 LDEPFNWKES--L-----AERSDEKSGVP-KGTEFLFAGKSGTVYYVD-QNGRQRTVH  227 (1416)
T ss_pred             hcccccCccc--h-----hhccccccCCC-CCcEEEEEcCCceEEEEc-CCCcEEEEE
Confidence            32 2222110  0     00000111123 688999999999998887 357766664

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.45  E-value=0.064  Score=46.61  Aligned_cols=233  Identities=16%  Similarity=0.174  Sum_probs=123.0

Q ss_pred             CeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC--------------------------CCe-----------------E
Q 024372           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGET--------------------------GDW-----------------I   54 (268)
Q Consensus        18 ~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~--------------------------~~~-----------------~   54 (268)
                      .|..+.|.+   +..-||.|...|.+.+|....                          +++                 .
T Consensus         3 ~v~~vs~a~---~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~   79 (395)
T PF08596_consen    3 SVTHVSFAP---ETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPL   79 (395)
T ss_dssp             -EEEEEEET---TTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEE
T ss_pred             eEEEEEecC---CCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCch
Confidence            477888875   444788899999998862111                          111                 1


Q ss_pred             EEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeec---------cCCeEEEEEEC-----CCC---CEE
Q 024372           55 GTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE---------HKHIVRACAFS-----EDT---HLL  117 (268)
Q Consensus        55 ~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~---------~~~~v~~v~~~-----~~~---~~l  117 (268)
                      .-+....++|.+++.+. =-++|-|..+|.+.|-|++....+..-.         ....++++.|+     .|+   -++
T Consensus        80 ~l~~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L  158 (395)
T PF08596_consen   80 TLLDAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICL  158 (395)
T ss_dssp             EEE---S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred             hheeccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEE
Confidence            11233468899999874 4578889999999999996665555422         12356677664     233   577


Q ss_pred             EEeeCCCeEEEEECC--C-CCCCCe---EecCCcccEEEEEEe-CCC--------------------CcEEEEeeCCCeE
Q 024372          118 LTGGFEKILRIFDLN--R-PDAPPR---EVGNSSGSIRTVAWL-HSD--------------------QTILSSCTDSGGV  170 (268)
Q Consensus       118 ~s~~~d~~i~~~d~~--~-~~~~~~---~~~~~~~~v~~~~~~-~~~--------------------~~~~~~~~~d~~i  170 (268)
                      +.|...|.+.+|.+-  . +....+   ....+.+++..+.-. .+.                    ..+++.+++ ..+
T Consensus       159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe-~~i  237 (395)
T PF08596_consen  159 LVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSE-SDI  237 (395)
T ss_dssp             EEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-S-SEE
T ss_pred             EEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcc-cce
Confidence            888999999999753  1 111111   111344555555432 211                    124555555 799


Q ss_pred             EEEeCCCCceEEeecCC-CCEEEEEEC-----CCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCCC-----ceeeEEcCC
Q 024372          171 RLWDARSGKIVQTLETK-SPVTSAEVS-----RDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCN-----TESASLEPK  238 (268)
Q Consensus       171 ~iwd~~~~~~~~~~~~~-~~v~~~~~s-----~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~~-----~~~~~~~~~  238 (268)
                      |++.+.+.+..++.... ..+..+.+-     ..+..|++ -.++.|+++.+-..+.+.....+..     ....++.+ 
T Consensus       238 rv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~-  316 (395)
T PF08596_consen  238 RVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISR-  316 (395)
T ss_dssp             EEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-T-
T ss_pred             EEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECC-
Confidence            99999988876655422 223344443     23444544 5789999999988888877776532     22344544 


Q ss_pred             CCCEEEeccCCC--eEEEEE
Q 024372          239 LGNIFIAGGEDM--WVHVFD  256 (268)
Q Consensus       239 ~~~~~~~gs~d~--~i~~wd  256 (268)
                      +|+.|+-.|...  .+.+|.
T Consensus       317 ~Gdi~~~~gpsE~~l~sv~~  336 (395)
T PF08596_consen  317 NGDIFYWTGPSEIQLFSVWG  336 (395)
T ss_dssp             TS-EEEE-SSSEEEEEEEES
T ss_pred             CCCEEEEeCcccEEEEEEEc
Confidence            688776554432  344443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.45  E-value=0.064  Score=46.49  Aligned_cols=197  Identities=13%  Similarity=0.124  Sum_probs=132.9

Q ss_pred             EEEecCCCc-EEEEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeC---CCeEEEEECCCCCCCCeEe
Q 024372           66 SCCLDANAL-FSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGF---EKILRIFDLNRPDAPPREV  141 (268)
Q Consensus        66 ~~~~~~~~~-~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~---d~~i~~~d~~~~~~~~~~~  141 (268)
                      .+++++.+. ..+....+..|.+.|..+...............+.++++++.++.+..   ++.+.+.|..+...... .
T Consensus        78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~-~  156 (381)
T COG3391          78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT-I  156 (381)
T ss_pred             ceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE-E
Confidence            456777776 456666678999999888777777766656677899999987777654   67888888665443322 2


Q ss_pred             cCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEE-e----ecCCCCEEEEEECCCCcEEEEe-C-C--CeEEE
Q 024372          142 GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQ-T----LETKSPVTSAEVSRDGRYITTA-D-G--SSVKF  212 (268)
Q Consensus       142 ~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~-~----~~~~~~v~~~~~s~~g~~l~~~-~-~--~~v~~  212 (268)
                      .--..+ ..+++.|.+..++.+-..++.|.+.|.......+ .    .........+.++|+|.++... . +  +.+..
T Consensus       157 ~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~  235 (381)
T COG3391         157 PVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLK  235 (381)
T ss_pred             ecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEE
Confidence            222234 6788889888777776677999999987766553 1    2223345678999999865443 2 2  57888


Q ss_pred             EeCCCceeeeE-EeCCC-CceeeEEcCCCCCEEEec-cCCCeEEEEECCCCcEEee
Q 024372          213 WDANHFGLVKG-YNMPC-NTESASLEPKLGNIFIAG-GEDMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       213 wd~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~g-s~d~~i~~wd~~~g~~~~~  265 (268)
                      .|......... +.... ........| .|..+... +..+.+.+-|..+......
T Consensus       236 id~~~~~v~~~~~~~~~~~~~~v~~~p-~g~~~yv~~~~~~~V~vid~~~~~v~~~  290 (381)
T COG3391         236 IDTATGNVTATDLPVGSGAPRGVAVDP-AGKAAYVANSQGGTVSVIDGATDRVVKT  290 (381)
T ss_pred             EeCCCceEEEeccccccCCCCceeECC-CCCEEEEEecCCCeEEEEeCCCCceeee
Confidence            88887665554 33333 244555566 57776666 4557899999877665543

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.42  E-value=0.045  Score=46.18  Aligned_cols=189  Identities=11%  Similarity=0.103  Sum_probs=103.4

Q ss_pred             CCCeeeEEEecCCCC----CcEEEEEeC----------CCCeEEeeCCCC-----Ce--EEEeeCccCcEEEEEecCCCc
Q 024372           16 SRPVVDLFYSPITPD----GFFLVSASK----------DSSPMLRNGETG-----DW--IGTFEGHKGAVWSCCLDANAL   74 (268)
Q Consensus        16 ~~~v~~~~f~~~~~d----g~~l~s~s~----------d~~i~iw~~~~~-----~~--~~~~~~h~~~V~~~~~~~~~~   74 (268)
                      .+.+.+++......+    -.+++.|+.          .|.+.++++.+.     ++  +... ..+++|++++-- ++.
T Consensus        23 ~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~-~~~g~V~ai~~~-~~~  100 (321)
T PF03178_consen   23 NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHST-EVKGPVTAICSF-NGR  100 (321)
T ss_dssp             TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEE-EESS-EEEEEEE-TTE
T ss_pred             CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEE-eecCcceEhhhh-CCE
Confidence            444555555443322    467887754          277888888773     22  2222 247889998755 455


Q ss_pred             EEEEeeCCCcEEEEeCCCCC-eeeeecc--CCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEe--cCCcccEE
Q 024372           75 FSASGSADFTAKLWDALTGD-EKHSFEH--KHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV--GNSSGSIR  149 (268)
Q Consensus        75 ~l~s~s~D~~v~iw~~~~~~-~~~~~~~--~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~--~~~~~~v~  149 (268)
                      ++++.  .+.+.+|++...+ .......  +..+.++...  +++++.|...+-+.++............  ....-.++
T Consensus       101 lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~  176 (321)
T PF03178_consen  101 LVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVT  176 (321)
T ss_dssp             EEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEE
T ss_pred             EEEee--cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEE
Confidence            44443  5799999998777 4333332  3345555443  5588888877778877443211111111  22234578


Q ss_pred             EEEEeCCCCcEEEEeeCCCeEEEEeCCC-------Cc-e---EEeecCCCCEEEE---EECC--CCc-------EEEEeC
Q 024372          150 TVAWLHSDQTILSSCTDSGGVRLWDARS-------GK-I---VQTLETKSPVTSA---EVSR--DGR-------YITTAD  206 (268)
Q Consensus       150 ~~~~~~~~~~~~~~~~~d~~i~iwd~~~-------~~-~---~~~~~~~~~v~~~---~~s~--~g~-------~l~~~~  206 (268)
                      ++.+..++. .++++..+|.+.++....       +. .   ...+.....++++   .+.|  .+.       .+.++.
T Consensus       177 ~~~~l~d~~-~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~  255 (321)
T PF03178_consen  177 AAEFLVDED-TIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTV  255 (321)
T ss_dssp             EEEEE-SSS-EEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEET
T ss_pred             EEEEecCCc-EEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEec
Confidence            888885554 566777889999987642       22 2   2334445557776   4455  221       455556


Q ss_pred             CCeEE
Q 024372          207 GSSVK  211 (268)
Q Consensus       207 ~~~v~  211 (268)
                      +|.|-
T Consensus       256 ~G~Ig  260 (321)
T PF03178_consen  256 DGSIG  260 (321)
T ss_dssp             TS-EE
T ss_pred             CCEEE
Confidence            66655

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.41  E-value=0.025  Score=46.48  Aligned_cols=144  Identities=23%  Similarity=0.303  Sum_probs=91.5

Q ss_pred             CCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEE----------
Q 024372          113 DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQ----------  182 (268)
Q Consensus       113 ~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~----------  182 (268)
                      .++.|+.|+.+| +.+++...+....+..  +...|..+...++-..+++- + |+.+.++++.......          
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvL-s-d~~l~~~~L~~l~~~~~~~~~~~~~~   80 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVL-S-DGQLYVYDLDSLEPVSTSAPLAFPKS   80 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEE-c-CCccEEEEchhhcccccccccccccc
Confidence            567888898888 8888873222222222  22348888888776655544 3 3999999987654333          


Q ss_pred             -----eecCCCCEEEEE---ECCCCcEEEEeCCCeEEEEeCCC----c-eeeeEEeCCCCceeeEEcCCCCCEEEeccCC
Q 024372          183 -----TLETKSPVTSAE---VSRDGRYITTADGSSVKFWDANH----F-GLVKGYNMPCNTESASLEPKLGNIFIAGGED  249 (268)
Q Consensus       183 -----~~~~~~~v~~~~---~s~~g~~l~~~~~~~v~~wd~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d  249 (268)
                           .+.....+...+   -.....+++.+-.+.|.+|....    + ...+.+..+..+..+.+.   ++.++.|..+
T Consensus        81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~---~~~i~v~~~~  157 (275)
T PF00780_consen   81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL---GNKICVGTSK  157 (275)
T ss_pred             ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe---CCEEEEEeCC
Confidence                 122222344444   22334566667677888877643    4 577888888888888876   5567777655


Q ss_pred             CeEEEEECCCCcEEee
Q 024372          250 MWVHVFDFHTGEQIAI  265 (268)
Q Consensus       250 ~~i~~wd~~~g~~~~~  265 (268)
                      + ..+.|+.+++....
T Consensus       158 ~-f~~idl~~~~~~~l  172 (275)
T PF00780_consen  158 G-FYLIDLNTGSPSEL  172 (275)
T ss_pred             c-eEEEecCCCCceEE
Confidence            5 67888887766544

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.39  E-value=0.0061  Score=54.82  Aligned_cols=117  Identities=20%  Similarity=0.246  Sum_probs=83.3

Q ss_pred             ccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeec-cC-CeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCC
Q 024372           60 HKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HK-HIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP  137 (268)
Q Consensus        60 h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~-~~-~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~  137 (268)
                      |...|.--+++..+.+++-|+.-|.+++++-..+.....-. -. ..+..++.|++..++|.|+..+.|-++.++.+...
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~  111 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR  111 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence            34455555677788999999999999999988777544322 22 23455667999999999999999999988753222


Q ss_pred             CeEe-----cCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCC
Q 024372          138 PREV-----GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS  177 (268)
Q Consensus       138 ~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~  177 (268)
                      ....     ..|...|+++.|++++..++ +|...|+|..--+.+
T Consensus       112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~y-sGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  112 DLDYVTPCDKSHKCRVTALEWSKNGMKLY-SGDSQGKVVLTELDS  155 (726)
T ss_pred             cceeeccccccCCceEEEEEecccccEEe-ecCCCceEEEEEech
Confidence            2111     12567899999999887655 555668888766665

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.38  E-value=0.049  Score=43.71  Aligned_cols=232  Identities=16%  Similarity=0.077  Sum_probs=120.7

Q ss_pred             eecCCCeeeEEEecCCCC------------------CcEEEEEeCCCCeEEeeCCCCCeEEEeeCccC-cEEEEEecCCC
Q 024372           13 HGHSRPVVDLFYSPITPD------------------GFFLVSASKDSSPMLRNGETGDWIGTFEGHKG-AVWSCCLDANA   73 (268)
Q Consensus        13 ~~h~~~v~~~~f~~~~~d------------------g~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~-~V~~~~~~~~~   73 (268)
                      ..|++.+.++.+-  +..                  |+.++.|...+.+.+-+.++|+..-.|..-.. .++ ....+++
T Consensus        29 gSHs~~~~avd~~--sG~~~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~-a~~d~~~  105 (354)
T KOG4649|consen   29 GSHSGIVIAVDPQ--SGNLIWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVR-AQCDFDG  105 (354)
T ss_pred             ecCCceEEEecCC--CCcEEeehhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeehhhhccc-eEEcCCC
Confidence            4688888877653  111                  66788899999999999999976655543222 222 2356788


Q ss_pred             cEEEEeeCCCcEEEEeCCCCCeeeeeccCCeEE-EEEECC-CCCEEEEeeCCCeEEEEECCCCCCCCeEecC--CcccEE
Q 024372           74 LFSASGSADFTAKLWDALTGDEKHSFEHKHIVR-ACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGN--SSGSIR  149 (268)
Q Consensus        74 ~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~-~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~--~~~~v~  149 (268)
                      ..+..|+.|++.+.-|..+..++....-+..+. +=+..| ++. |+.+...|.+---..+..  ...++..  ..+++.
T Consensus       106 glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~s-ly~a~t~G~vlavt~~~~--~~~~~w~~~~~~PiF  182 (354)
T KOG4649|consen  106 GLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGS-LYAAITAGAVLAVTKNPY--SSTEFWAATRFGPIF  182 (354)
T ss_pred             ceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCce-EEEEeccceEEEEccCCC--CcceehhhhcCCccc
Confidence            899999999999999999988877755443322 112344 333 333444443322222211  1112111  112222


Q ss_pred             EEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCCC-----------EEEEEECCCCcEEEEeCCCeEEEEeCCCc
Q 024372          150 TVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSP-----------VTSAEVSRDGRYITTADGSSVKFWDANHF  218 (268)
Q Consensus       150 ~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~-----------v~~~~~s~~g~~l~~~~~~~v~~wd~~~~  218 (268)
                      .--.. -++.+..++- ||.+.-+| ..|+++..+...++           ...+.+..++-+.+.---..-.+|..+.+
T Consensus       183 ~splc-v~~sv~i~~V-dG~l~~f~-~sG~qvwr~~t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g  259 (354)
T KOG4649|consen  183 ASPLC-VGSSVIITTV-DGVLTSFD-ESGRQVWRPATKGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSG  259 (354)
T ss_pred             cCcee-ccceEEEEEe-ccEEEEEc-CCCcEEEeecCCCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCC
Confidence            11000 0122333333 25555555 44555544433322           13344444444443332234567777766


Q ss_pred             eeeeEEeCCCCceeeEEcCCC---CCEEEeccCCCeEEEE
Q 024372          219 GLVKGYNMPCNTESASLEPKL---GNIFIAGGEDMWVHVF  255 (268)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~gs~d~~i~~w  255 (268)
                      ...+.|-.+..  ...+....   .+++..++.|+++.+-
T Consensus       260 ~t~~vy~~p~l--~F~~h~~~~S~~~ll~~~s~dgkv~il  297 (354)
T KOG4649|consen  260 TTLHVYLSPKL--RFDLHSPGISYPKLLRRSSGDGKVMIL  297 (354)
T ss_pred             cEEEEEeCccc--ceeccCCCCcchhhhhhhcCCCcEEEE
Confidence            44444433311  22222211   3455567889888777

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.33  E-value=0.025  Score=39.32  Aligned_cols=95  Identities=18%  Similarity=0.178  Sum_probs=63.5

Q ss_pred             CCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEeCCCCceeeE
Q 024372          155 HSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESAS  234 (268)
Q Consensus       155 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~~~~~~~~~  234 (268)
                      .++.+-|+.|++|..||+|+-  .+.+..+.....+.++.-.+.++|..+-.+|+|-+|+-..  .+-....+..+.+..
T Consensus        12 ~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~--RlWRiKSK~~~~~~~   87 (111)
T PF14783_consen   12 GDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDRSQ--RLWRIKSKNQVTSMA   87 (111)
T ss_pred             CCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeCcc--eeeeeccCCCeEEEE
Confidence            345566778889999999864  4777778777888899988888888888889999988532  122222233344444


Q ss_pred             EcCCC--C-CEEEeccCCCeEE
Q 024372          235 LEPKL--G-NIFIAGGEDMWVH  253 (268)
Q Consensus       235 ~~~~~--~-~~~~~gs~d~~i~  253 (268)
                      ....+  | .-|++|=.+|.|-
T Consensus        88 ~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   88 FYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             EEcCCCCCceEEEEEecCCeEE
Confidence            33222  2 3577777777664

>smart00320 WD40 WD40 repeats

Probab=97.32  E-value=0.00075  Score=36.20  Aligned_cols=34  Identities=41%  Similarity=0.685  Sum_probs=29.3

Q ss_pred             EeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEee
Q 024372           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRN   47 (268)
Q Consensus        11 ~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~   47 (268)
                      .+..|...|.++.|.|   ++.++++++.|+.+++|+
T Consensus         7 ~~~~~~~~i~~~~~~~---~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        7 TLKGHTGPVTSVAFSP---DGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEecCCceeEEEECC---CCCEEEEecCCCeEEEcC
Confidence            3457999999999986   557999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.30  E-value=0.1  Score=45.67  Aligned_cols=185  Identities=13%  Similarity=0.181  Sum_probs=92.4

Q ss_pred             CeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeecc---CCe-----EEEEEECCC
Q 024372           42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEH---KHI-----VRACAFSED  113 (268)
Q Consensus        42 ~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~---~~~-----v~~v~~~~~  113 (268)
                      .|+||+. .|+++.++.--.+.+..+.|..+.. |+.-..||+++++|+.... ...+..   ...     +....+..+
T Consensus        62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~  138 (410)
T PF04841_consen   62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEE-LVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKN  138 (410)
T ss_pred             EEEEECC-CCCEeEEEEECCCCEEEEEECCCCe-EEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCC
Confidence            4777874 5777777764448899999988655 4556789999999986333 111111   011     222233445


Q ss_pred             CCEEEEeeCCCeEEEE-ECCCCCCCCeE---ecCCcc------cEEE-EEEeCCCCcEEEEeeCCCeEEEEeCCCCceEE
Q 024372          114 THLLLTGGFEKILRIF-DLNRPDAPPRE---VGNSSG------SIRT-VAWLHSDQTILSSCTDSGGVRLWDARSGKIVQ  182 (268)
Q Consensus       114 ~~~l~s~~~d~~i~~~-d~~~~~~~~~~---~~~~~~------~v~~-~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~  182 (268)
                      |-.+.++  ++.+.+. +...+ ...+.   ......      .... ..+..+....+... .++.+.+-+....+   
T Consensus       139 GivvLt~--~~~~~~v~n~~~~-~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~-~g~~i~~i~~~~~~---  211 (410)
T PF04841_consen  139 GIVVLTG--NNRFYVVNNIDEP-VKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLA-NGETIYIIDENSFK---  211 (410)
T ss_pred             CEEEECC--CCeEEEEeCcccc-chhhccccCCCcccccccccccccceEeecCcceEEEEe-cCCEEEEEEccccc---
Confidence            6444433  3333333 22211 01010   000000      0000 11222222222222 22455533322211   


Q ss_pred             eecCCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCC--CCceeeEEc
Q 024372          183 TLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMP--CNTESASLE  236 (268)
Q Consensus       183 ~~~~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~--~~~~~~~~~  236 (268)
                      .+...+++..+++||+|++++. .+++.+.+....-.+.+..+...  ..+....|+
T Consensus       212 ~i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WC  268 (410)
T PF04841_consen  212 QIDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWC  268 (410)
T ss_pred             cccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEE
Confidence            1334467999999999999875 56678877765444455555543  333444444

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.22  E-value=0.13  Score=45.11  Aligned_cols=194  Identities=12%  Similarity=0.091  Sum_probs=99.6

Q ss_pred             EEEEEecCCCcEEEE-eeCC----CcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCC-----------eEE
Q 024372           64 VWSCCLDANALFSAS-GSAD----FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEK-----------ILR  127 (268)
Q Consensus        64 V~~~~~~~~~~~l~s-~s~D----~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~-----------~i~  127 (268)
                      +...+++|+++++|- -+..    ..+++.|+.+++.+...-....-..+.|.++++.|+....+.           .+.
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~  205 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY  205 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence            335678999998763 2333    459999999986654321111112389999988776554333           367


Q ss_pred             EEECCCCCCCC-eEecCCccc--EEEEEEeCCCCcEEEEeeCC---CeEEEEeCCCC----ceEEee-cCCCCEE-EEEE
Q 024372          128 IFDLNRPDAPP-REVGNSSGS--IRTVAWLHSDQTILSSCTDS---GGVRLWDARSG----KIVQTL-ETKSPVT-SAEV  195 (268)
Q Consensus       128 ~~d~~~~~~~~-~~~~~~~~~--v~~~~~~~~~~~~~~~~~~d---~~i~iwd~~~~----~~~~~~-~~~~~v~-~~~~  195 (268)
                      .|.+.++...- ..+......  ...+..++++..+++.....   ..+.+-|+..+    .....+ .....+. .+..
T Consensus       206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~  285 (414)
T PF02897_consen  206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDH  285 (414)
T ss_dssp             EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEE
T ss_pred             EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEc
Confidence            77776543221 122222222  45677788888777654443   35888888875    223332 3223333 3333


Q ss_pred             CCCCcEEEEeC----CCeEEEEeCCCcee---eeEEeCCCC-ceeeEEcCCCCCEEEeccCCC--eEEEEECC
Q 024372          196 SRDGRYITTAD----GSSVKFWDANHFGL---VKGYNMPCN-TESASLEPKLGNIFIAGGEDM--WVHVFDFH  258 (268)
Q Consensus       196 s~~g~~l~~~~----~~~v~~wd~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~gs~d~--~i~~wd~~  258 (268)
                      . ++.+++.++    .+.|...++.....   ...+.-+.. .....+..-.+.+++.--.|+  .|++||..
T Consensus       286 ~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~  357 (414)
T PF02897_consen  286 H-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLD  357 (414)
T ss_dssp             E-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred             c-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECC
Confidence            3 555544332    34566667766542   112222222 122222221244555554444  68889987

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.20  E-value=0.011  Score=51.69  Aligned_cols=136  Identities=15%  Similarity=0.163  Sum_probs=90.2

Q ss_pred             EEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcE--E-----EEeeCCCcEEEEeCCCCCe-eeee------cc
Q 024372           36 SASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALF--S-----ASGSADFTAKLWDALTGDE-KHSF------EH  101 (268)
Q Consensus        36 s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~--l-----~s~s~D~~v~iw~~~~~~~-~~~~------~~  101 (268)
                      ++..-..+.-.|++.|+.+.+++-|.. |.-+.+.|+.+.  |     .-|-.|..|.-||..-... +...      ..
T Consensus       351 ~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~  429 (644)
T KOG2395|consen  351 DGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYST  429 (644)
T ss_pred             CCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccccc
Confidence            334444555568899999999988876 666777776432  2     2345678888898763222 1111      12


Q ss_pred             CCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCC
Q 024372          102 KHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR  176 (268)
Q Consensus       102 ~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~  176 (268)
                      +....|.+-..+| .++.|+.+|.||+||- .+..-...+.....+|..|....+|.+++++|  +.++.+-|+.
T Consensus       430 k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc--~tyLlLi~t~  500 (644)
T KOG2395|consen  430 KNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC--KTYLLLIDTL  500 (644)
T ss_pred             ccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec--ccEEEEEEEe
Confidence            2234455444455 6788999999999994 33333345566677899999999999999887  3678787764

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.18  E-value=0.0028  Score=56.27  Aligned_cols=91  Identities=15%  Similarity=0.154  Sum_probs=72.7

Q ss_pred             CeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEE-EEEecCCCcEEEEeeCCCcEEEEeCCCCCee
Q 024372           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVW-SCCLDANALFSASGSADFTAKLWDALTGDEK   96 (268)
Q Consensus        18 ~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~-~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~   96 (268)
                      .|..+.|+|   .-.++|.+..+|.+.+.... -..+-++.-|...|. +++|.|||+.+|.|=.||+|++-|++.+..+
T Consensus        22 ~i~~~ewnP---~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l   97 (665)
T KOG4640|consen   22 NIKRIEWNP---KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL   97 (665)
T ss_pred             ceEEEEEcC---ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence            566888987   45699999999999888777 445667776666666 9999999999999999999999999988877


Q ss_pred             ee--eccCCeEEEEEECC
Q 024372           97 HS--FEHKHIVRACAFSE  112 (268)
Q Consensus        97 ~~--~~~~~~v~~v~~~~  112 (268)
                      ..  +.....|.++-|.+
T Consensus        98 ~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   98 VSFLFSVETDISKGIWDR  115 (665)
T ss_pred             eccccccccchheeeccc
Confidence            66  44555666666653

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.17  E-value=0.18  Score=45.77  Aligned_cols=232  Identities=14%  Similarity=0.091  Sum_probs=125.7

Q ss_pred             cEEEEEeCCCCeEEeeCCCCCeEEEee--CccC--cEEE-EEecCCCcEEEEee-----CCCcEEEEeCCCCCeeeeecc
Q 024372           32 FFLVSASKDSSPMLRNGETGDWIGTFE--GHKG--AVWS-CCLDANALFSASGS-----ADFTAKLWDALTGDEKHSFEH  101 (268)
Q Consensus        32 ~~l~s~s~d~~i~iw~~~~~~~~~~~~--~h~~--~V~~-~~~~~~~~~l~s~s-----~D~~v~iw~~~~~~~~~~~~~  101 (268)
                      ..++.++.|+.+.-.|..+|+.+=...  .+..  .+.+ -.+. ++..++..+     .++.|.-+|.++++.+-.+..
T Consensus       121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~-~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~  199 (527)
T TIGR03075       121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV-KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT  199 (527)
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEE-CCEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence            467778889999889999998764432  1211  1111 0111 344443322     268899999988886554421


Q ss_pred             C--C------------------------------eE-EEEEECCCCCEEEEeeCC-----C-----------eEEEEECC
Q 024372          102 K--H------------------------------IV-RACAFSEDTHLLLTGGFE-----K-----------ILRIFDLN  132 (268)
Q Consensus       102 ~--~------------------------------~v-~~v~~~~~~~~l~s~~~d-----~-----------~i~~~d~~  132 (268)
                      .  .                              .+ ....+.+...+++.+..+     +           .|--.|++
T Consensus       200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~  279 (527)
T TIGR03075       200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD  279 (527)
T ss_pred             cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc
Confidence            0  0                              01 123556655666655422     2           23344555


Q ss_pred             CCCCCCeEec-CCcc-------cEEEEEEeCCCC--cEEEEeeCCCeEEEEeCCCCceEEe--------e----cCCC--
Q 024372          133 RPDAPPREVG-NSSG-------SIRTVAWLHSDQ--TILSSCTDSGGVRLWDARSGKIVQT--------L----ETKS--  188 (268)
Q Consensus       133 ~~~~~~~~~~-~~~~-------~v~~~~~~~~~~--~~~~~~~~d~~i~iwd~~~~~~~~~--------~----~~~~--  188 (268)
                      +++..-..+. +|..       ...-+..-.++.  .+++.+..+|.+.+.|-++|+.+..        .    ....  
T Consensus       280 TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~  359 (527)
T TIGR03075       280 TGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGR  359 (527)
T ss_pred             cCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCC
Confidence            5554332221 2211       011112112443  4677788889999999999987621        1    0000  


Q ss_pred             ----------------------------CEEEEEECCCCcEEEE--eC--------------------------------
Q 024372          189 ----------------------------PVTSAEVSRDGRYITT--AD--------------------------------  206 (268)
Q Consensus       189 ----------------------------~v~~~~~s~~g~~l~~--~~--------------------------------  206 (268)
                                                  ....++++|+..++..  .+                                
T Consensus       360 p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~  439 (527)
T TIGR03075       360 PIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDH  439 (527)
T ss_pred             CccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCC
Confidence                                        0122455555443321  11                                


Q ss_pred             CCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEee
Q 024372          207 GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       207 ~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~  265 (268)
                      -+.|.-+|+.+++..-.+..........+.- .+.+++.+..|+.++.+|.+|||++-.
T Consensus       440 ~g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t-~g~lvf~g~~~G~l~a~D~~TGe~lw~  497 (527)
T TIGR03075       440 MGSLIAWDPITGKIVWEHKEDFPLWGGVLAT-AGDLVFYGTLEGYFKAFDAKTGEELWK  497 (527)
T ss_pred             ceeEEEEeCCCCceeeEecCCCCCCCcceEE-CCcEEEEECCCCeEEEEECCCCCEeEE
Confidence            1346777887777665555433222222222 355777788899999999999998754

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.10  E-value=0.16  Score=44.09  Aligned_cols=196  Identities=14%  Similarity=0.153  Sum_probs=100.7

Q ss_pred             eeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEe--eC------ccCcEEEEEec-----CCC---cE
Q 024372           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF--EG------HKGAVWSCCLD-----ANA---LF   75 (268)
Q Consensus        12 ~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~--~~------h~~~V~~~~~~-----~~~---~~   75 (268)
                      +....++|++++.+.   =| .+|.|..+|.+.|.|.+....+..-  +.      ....|.++.|+     .|+   -.
T Consensus        82 ~~~~~g~vtal~~S~---iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~  157 (395)
T PF08596_consen   82 LDAKQGPVTALKNSD---IG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSIC  157 (395)
T ss_dssp             E---S-SEEEEEE-B---TS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEE
T ss_pred             eeccCCcEeEEecCC---Cc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceE
Confidence            345689999999984   34 7899999999999999777665442  22      12346667664     333   35


Q ss_pred             EEEeeCCCcEEEEeCCC-CCeee------ee-ccCCeEEEEE-ECCC-C-------------------CEEEEeeCCCeE
Q 024372           76 SASGSADFTAKLWDALT-GDEKH------SF-EHKHIVRACA-FSED-T-------------------HLLLTGGFEKIL  126 (268)
Q Consensus        76 l~s~s~D~~v~iw~~~~-~~~~~------~~-~~~~~v~~v~-~~~~-~-------------------~~l~s~~~d~~i  126 (268)
                      +..|-..|.+.+|.+.- .....      .. .+..++..+. ++.+ +                   +-++....+..+
T Consensus       158 L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~i  237 (395)
T PF08596_consen  158 LLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDI  237 (395)
T ss_dssp             EEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEE
T ss_pred             EEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccce
Confidence            66777889999998742 11111      11 2333433332 3221 0                   223344557889


Q ss_pred             EEEECCCCCCCCeEecCCcccEEEEEEe----CCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCC-----CEEEEEECC
Q 024372          127 RIFDLNRPDAPPREVGNSSGSIRTVAWL----HSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS-----PVTSAEVSR  197 (268)
Q Consensus       127 ~~~d~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~-----~v~~~~~s~  197 (268)
                      |++.+.+.+...+.+ ...-....+.+.    ......|+.-..+|.++++.+..-+.+..++...     ......+++
T Consensus       238 rv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~  316 (395)
T PF08596_consen  238 RVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISR  316 (395)
T ss_dssp             EEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-T
T ss_pred             EEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECC
Confidence            999876544322333 111112223332    1234556666778999999999988887765422     234567799


Q ss_pred             CCcEEEEeCCCeEEE
Q 024372          198 DGRYITTADGSSVKF  212 (268)
Q Consensus       198 ~g~~l~~~~~~~v~~  212 (268)
                      +|.++.-.+...+.+
T Consensus       317 ~Gdi~~~~gpsE~~l  331 (395)
T PF08596_consen  317 NGDIFYWTGPSEIQL  331 (395)
T ss_dssp             TS-EEEE-SSSEEEE
T ss_pred             CCCEEEEeCcccEEE
Confidence            998776444434433

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.04  E-value=0.16  Score=42.88  Aligned_cols=207  Identities=18%  Similarity=0.127  Sum_probs=106.9

Q ss_pred             CeEEeeCCCCCeEEEeeCcc-CcEE---EEEecCC----CcEEEEeeC----------CCcEEEEeCCCC-----C--ee
Q 024372           42 SPMLRNGETGDWIGTFEGHK-GAVW---SCCLDAN----ALFSASGSA----------DFTAKLWDALTG-----D--EK   96 (268)
Q Consensus        42 ~i~iw~~~~~~~~~~~~~h~-~~V~---~~~~~~~----~~~l~s~s~----------D~~v~iw~~~~~-----~--~~   96 (268)
                      .+++.|..+.+.+.++.-.. ..+.   .+.+..+    ..+++.|..          .|.+.++++...     +  .+
T Consensus         3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i   82 (321)
T PF03178_consen    3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI   82 (321)
T ss_dssp             EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred             EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence            46777777777665553221 1233   3334432    455554422          288999999874     2  12


Q ss_pred             eeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCC-CCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeC
Q 024372           97 HSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPD-APPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA  175 (268)
Q Consensus        97 ~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~  175 (268)
                      .....+.+|.+++-- +++++++.  .+.+.+|++...+ ............+.++....   .+++.|.-.+.+.++..
T Consensus        83 ~~~~~~g~V~ai~~~-~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~---~~I~vgD~~~sv~~~~~  156 (321)
T PF03178_consen   83 HSTEVKGPVTAICSF-NGRLVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFK---NYILVGDAMKSVSLLRY  156 (321)
T ss_dssp             EEEEESS-EEEEEEE-TTEEEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEET---TEEEEEESSSSEEEEEE
T ss_pred             EEEeecCcceEhhhh-CCEEEEee--cCEEEEEEccCcccchhhheecceEEEEEEeccc---cEEEEEEcccCEEEEEE
Confidence            233467788887644 45444433  4789999987655 22222323334666766553   24555555577777644


Q ss_pred             CC-CceEEeec---CCCCEEEEEECCCCcEEE-EeCCCeEEEEeCCC-----------ceeeeEEeCCCCceee---EEc
Q 024372          176 RS-GKIVQTLE---TKSPVTSAEVSRDGRYIT-TADGSSVKFWDANH-----------FGLVKGYNMPCNTESA---SLE  236 (268)
Q Consensus       176 ~~-~~~~~~~~---~~~~v~~~~~s~~g~~l~-~~~~~~v~~wd~~~-----------~~~~~~~~~~~~~~~~---~~~  236 (268)
                      +. .+.+..+.   ....+.++.+-++++.++ +..++.+.++....           ...+..+.....+..+   .+.
T Consensus       157 ~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~  236 (321)
T PF03178_consen  157 DEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLI  236 (321)
T ss_dssp             ETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS
T ss_pred             EccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEee
Confidence            32 23233332   223477788776654544 44578888876542           1233445555444444   333


Q ss_pred             CC--CC-----CEEEeccCCCeEEE
Q 024372          237 PK--LG-----NIFIAGGEDMWVHV  254 (268)
Q Consensus       237 ~~--~~-----~~~~~gs~d~~i~~  254 (268)
                      +.  ..     ..++.++.+|.|.+
T Consensus       237 ~~~~~~~~~~~~~i~~~T~~G~Ig~  261 (321)
T PF03178_consen  237 PRSGSSESPNRPQILYGTVDGSIGV  261 (321)
T ss_dssp             --SSSS-TTEEEEEEEEETTS-EEE
T ss_pred             ecCCCCcccccceEEEEecCCEEEE
Confidence            31  11     24777777887763

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.02  E-value=0.14  Score=41.91  Aligned_cols=189  Identities=14%  Similarity=0.168  Sum_probs=124.6

Q ss_pred             ecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCc-cCcEEEEEecCCCcEEEEeeCCCcEEEEeCCC
Q 024372           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH-KGAVWSCCLDANALFSASGSADFTAKLWDALT   92 (268)
Q Consensus        14 ~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h-~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~   92 (268)
                      |-+..|.++.|+|   +.+.|++......-.|+-..+|++++++.-. -+.-.++++..++.+.++--++..+.++.+..
T Consensus        83 g~~~nvS~LTynp---~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~  159 (316)
T COG3204          83 GETANVSSLTYNP---DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDA  159 (316)
T ss_pred             cccccccceeeCC---CcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence            4444599999996   6678999999889899988899999887521 12234577888899888888999999987755


Q ss_pred             CCeee-----ee-----cc-CCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCC--eEecCC-------cccEEEEE
Q 024372           93 GDEKH-----SF-----EH-KHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP--REVGNS-------SGSIRTVA  152 (268)
Q Consensus        93 ~~~~~-----~~-----~~-~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~--~~~~~~-------~~~v~~~~  152 (268)
                      .....     .+     .+ ....-.++|.|....|..+=.-+-+++|.........  .....+       ...+..+.
T Consensus       160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~  239 (316)
T COG3204         160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE  239 (316)
T ss_pred             CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence            43211     11     12 2235679999988888877777778888764221010  000011       12456777


Q ss_pred             EeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCC----------CCEEEEEECCCCcEEEEeC
Q 024372          153 WLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK----------SPVTSAEVSRDGRYITTAD  206 (268)
Q Consensus       153 ~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~----------~~v~~~~~s~~g~~l~~~~  206 (268)
                      |.+...++++-+.+++.+.-.|.+ |+.+..+...          .....++..++|.+.+.|+
T Consensus       240 ~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSE  302 (316)
T COG3204         240 FNAITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSE  302 (316)
T ss_pred             ecCCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEec
Confidence            887778888887777777777765 4444433211          2356677777777655554

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.98  E-value=0.21  Score=43.36  Aligned_cols=217  Identities=15%  Similarity=0.131  Sum_probs=128.0

Q ss_pred             eEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEE-EE-eeCCCcEEEEeCCCCCeeeeeccC-CeEEEEEECCCCC-EEE
Q 024372           43 PMLRNGETGDWIGTFEGHKGAVWSCCLDANALFS-AS-GSADFTAKLWDALTGDEKHSFEHK-HIVRACAFSEDTH-LLL  118 (268)
Q Consensus        43 i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l-~s-~s~D~~v~iw~~~~~~~~~~~~~~-~~v~~v~~~~~~~-~l~  118 (268)
                      +.+++..+.+....+.-+. ....+.+.+++..+ ++ ...+ .+..-+............. ..-..+..++.+. ..+
T Consensus        13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~-~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv   90 (381)
T COG3391          13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSN-DVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYV   90 (381)
T ss_pred             eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCc-eeeecccccceeeeeccCCCccccceeeCCCCCeEEE
Confidence            5555555555555554333 33445667777433 33 3333 5555555422222222222 2234567777776 444


Q ss_pred             EeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEee--CCCeEEEEeCCCCceEEeecCCCCEEEEEEC
Q 024372          119 TGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT--DSGGVRLWDARSGKIVQTLETKSPVTSAEVS  196 (268)
Q Consensus       119 s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s  196 (268)
                      ....++.+.+.|..............  .-..+++.+++..+.++-.  .++++.+.|..+.+.+.+.........++++
T Consensus        91 ~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~  168 (381)
T COG3391          91 TTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVD  168 (381)
T ss_pred             ecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEEC
Confidence            55556889999965433221111111  3456788888888777765  3689999999999988875543223899999


Q ss_pred             CCCcEEEEe--CCCeEEEEeCCCceeee-----EEeCCCCceeeEEcCCCCCEE-EeccC--CCeEEEEECCCCcEEe
Q 024372          197 RDGRYITTA--DGSSVKFWDANHFGLVK-----GYNMPCNTESASLEPKLGNIF-IAGGE--DMWVHVFDFHTGEQIA  264 (268)
Q Consensus       197 ~~g~~l~~~--~~~~v~~wd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~gs~--d~~i~~wd~~~g~~~~  264 (268)
                      |+|..+...  .++.|.+.|.......+     .......+....+.+ +|..+ ++-..  ++.+...|..++....
T Consensus       169 p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~-~g~~~yV~~~~~~~~~v~~id~~~~~v~~  245 (381)
T COG3391         169 PDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDP-DGNRVYVANDGSGSNNVLKIDTATGNVTA  245 (381)
T ss_pred             CCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECC-CCCEEEEEeccCCCceEEEEeCCCceEEE
Confidence            999865443  47899999977655443     122223345566666 46544 43322  3689999988776554

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.91  E-value=0.17  Score=41.27  Aligned_cols=237  Identities=16%  Similarity=0.180  Sum_probs=127.4

Q ss_pred             CCCeeeEEEecCCCCCcE-EEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcE-EEEeeCCCc-EEEEeCCC
Q 024372           16 SRPVVDLFYSPITPDGFF-LVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALF-SASGSADFT-AKLWDALT   92 (268)
Q Consensus        16 ~~~v~~~~f~~~~~dg~~-l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~-l~s~s~D~~-v~iw~~~~   92 (268)
                      ..++..-+|..  .||++ +++.+.+|++.--      ..---++|     .++++|...+ ++-+-+-|+ ..++|...
T Consensus        34 ~qavfasaf~~--~dgs~g~a~~~eaGk~v~~------~~lpaR~H-----gi~~~p~~~ravafARrPGtf~~vfD~~~  100 (366)
T COG3490          34 AQAVFASAFDA--RDGSFGAATLSEAGKIVFA------TALPARGH-----GIAFHPALPRAVAFARRPGTFAMVFDPNG  100 (366)
T ss_pred             Ccchheeeeec--cCCceeEEEEccCCceeee------eecccccC-----CeecCCCCcceEEEEecCCceEEEECCCC
Confidence            34555555553  45543 4455555555321      00011344     3556766544 333445555 45788887


Q ss_pred             CCeeeeec---cCCeEEEEEECCCCCEEEEeeCC-----CeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEe
Q 024372           93 GDEKHSFE---HKHIVRACAFSEDTHLLLTGGFE-----KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC  164 (268)
Q Consensus        93 ~~~~~~~~---~~~~v~~v~~~~~~~~l~s~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  164 (268)
                      .+...+..   ..+.--.-.|||||.+|+..-.|     |.|-+||.+..-...-++..+.-.-..+.+.+++..++.+.
T Consensus       101 ~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan  180 (366)
T COG3490         101 AQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN  180 (366)
T ss_pred             CcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence            76554442   22344455699999999986433     77999998754433444544444445678888888776654


Q ss_pred             e------CCC-----------eEEEEeCCCCceEEee--c---CCCCEEEEEECCCCcEEEEeC------CCeEEEEeCC
Q 024372          165 T------DSG-----------GVRLWDARSGKIVQTL--E---TKSPVTSAEVSRDGRYITTAD------GSSVKFWDAN  216 (268)
Q Consensus       165 ~------~d~-----------~i~iwd~~~~~~~~~~--~---~~~~v~~~~~s~~g~~l~~~~------~~~v~~wd~~  216 (268)
                      +      +-|           .+.+-|..+|+.+.+.  .   .+-.+.-++..+||+.+....      |.--.+=-..
T Consensus       181 GGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~  260 (366)
T COG3490         181 GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFR  260 (366)
T ss_pred             CceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeecc
Confidence            3      111           2444565666655432  2   123467788888888766431      1111111122


Q ss_pred             CceeeeEEeCCCC--------ceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEee
Q 024372          217 HFGLVKGYNMPCN--------TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       217 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~  265 (268)
                      .++.++-+..++.        +-+++...+++-..+|.=.....-+||.++|..+..
T Consensus       261 ~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~  317 (366)
T COG3490         261 KGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSE  317 (366)
T ss_pred             CCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEec
Confidence            3344444444322        123444443333333444455677899999987653

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.87  E-value=0.24  Score=44.32  Aligned_cols=151  Identities=16%  Similarity=0.259  Sum_probs=92.4

Q ss_pred             CCCeeeEEEecCCCCCcEEEEEe---CCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCC----CcEEEEeeCCCcEEEE
Q 024372           16 SRPVVDLFYSPITPDGFFLVSAS---KDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN----ALFSASGSADFTAKLW   88 (268)
Q Consensus        16 ~~~v~~~~f~~~~~dg~~l~s~s---~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~----~~~l~s~s~D~~v~iw   88 (268)
                      -+||.+++|-    ||+.++-..   .+|.+++=|.   +.++.|    ..|..++|.|-    ..-++....-+.|-+|
T Consensus        19 iHPvhGlaWT----DGkqVvLT~L~l~~gE~kfGds---~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVW   87 (671)
T PF15390_consen   19 IHPVHGLAWT----DGKQVVLTDLQLHNGEPKFGDS---KVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVW   87 (671)
T ss_pred             hccccceEec----CCCEEEEEeeeeeCCccccCCc---cEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEE
Confidence            4589999994    777665442   2333322111   233444    46889999875    2245566778889999


Q ss_pred             eCCC-----CCe--eeeeccCC--eE--EEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCC
Q 024372           89 DALT-----GDE--KHSFEHKH--IV--RACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSD  157 (268)
Q Consensus        89 ~~~~-----~~~--~~~~~~~~--~v--~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~  157 (268)
                      .+..     ++.  .++.+..+  +|  ..+.|||...+|+.=.....--++++..............|.|.|.+|.++|
T Consensus        88 qL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG  167 (671)
T PF15390_consen   88 QLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDG  167 (671)
T ss_pred             EeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcC
Confidence            8742     221  12222222  22  3567999888877655544445667665444444444567899999999999


Q ss_pred             CcEEEEeeCCCeEEEEeCCC
Q 024372          158 QTILSSCTDSGGVRLWDARS  177 (268)
Q Consensus       158 ~~~~~~~~~d~~i~iwd~~~  177 (268)
                      ..++++-+..=.-.|||-..
T Consensus       168 ~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  168 QRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             CEEEEEeCCeEEEEEecCch
Confidence            88766654434577898643

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.83  E-value=0.31  Score=44.74  Aligned_cols=181  Identities=14%  Similarity=0.090  Sum_probs=91.5

Q ss_pred             CeeeEEEecCCCCCcEEEEEe------CCCCeEEeeCCC-CCeEEEeeCccCcEEEEEecCCCcEEEEeeCC-CcEEEE-
Q 024372           18 PVVDLFYSPITPDGFFLVSAS------KDSSPMLRNGET-GDWIGTFEGHKGAVWSCCLDANALFSASGSAD-FTAKLW-   88 (268)
Q Consensus        18 ~v~~~~f~~~~~dg~~l~s~s------~d~~i~iw~~~~-~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D-~~v~iw-   88 (268)
                      .+.+.+.+   |||+.+|...      .|..-.+|-... ++...-+.+.  ....-+|+|++..+++.+.. ..+++. 
T Consensus       351 ~vsspaiS---pdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~  425 (591)
T PRK13616        351 NITSAALS---RSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR  425 (591)
T ss_pred             CcccceEC---CCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence            45566665   5888887776      355556664332 2222222332  25566799998877666432 223333 


Q ss_pred             ----------eCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEE---EECCCCCCCC---eEecC-CcccEEEE
Q 024372           89 ----------DALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRI---FDLNRPDAPP---REVGN-SSGSIRTV  151 (268)
Q Consensus        89 ----------~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~---~d~~~~~~~~---~~~~~-~~~~v~~~  151 (268)
                                ++..+....  .....|..+.|+|||+.++... ++.+.+   -....+....   ..... .......+
T Consensus       426 ~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l  502 (591)
T PRK13616        426 DPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSL  502 (591)
T ss_pred             cCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccc
Confidence                      332222222  2345699999999999888755 466555   2222222111   11211 22235778


Q ss_pred             EEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecC---CCCEEEEEECCCCcEEEEeCCC
Q 024372          152 AWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET---KSPVTSAEVSRDGRYITTADGS  208 (268)
Q Consensus       152 ~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~---~~~v~~~~~s~~g~~l~~~~~~  208 (268)
                      .|.+++..++.+...+..+...++. |.....+..   ..++..++-+++ .++++.+++
T Consensus       503 ~W~~~~~L~V~~~~~~~~v~~v~vD-G~~~~~~~~~n~~~~v~~vaa~~~-~iyv~~~~g  560 (591)
T PRK13616        503 DWRTGDSLVVGRSDPEHPVWYVNLD-GSNSDALPSRNLSAPVVAVAASPS-TVYVTDARA  560 (591)
T ss_pred             eEecCCEEEEEecCCCCceEEEecC-CccccccCCCCccCceEEEecCCc-eEEEEcCCc
Confidence            9988776433332222234333443 222222222   345667777764 343443343

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.81  E-value=0.2  Score=40.61  Aligned_cols=166  Identities=17%  Similarity=0.160  Sum_probs=93.5

Q ss_pred             eeeeeccC--CeEEEEEECCCCCEEEEeeCCC--eEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeE
Q 024372           95 EKHSFEHK--HIVRACAFSEDTHLLLTGGFEK--ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (268)
Q Consensus        95 ~~~~~~~~--~~v~~v~~~~~~~~l~s~~~d~--~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i  170 (268)
                      .+..++|.  .....+.|..++.++-+.+.-|  .++.+|+.+++...+......-==..++.. .+ .+..---.++..
T Consensus        35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d-~l~qLTWk~~~~  112 (264)
T PF05096_consen   35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GD-KLYQLTWKEGTG  112 (264)
T ss_dssp             EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TT-EEEEEESSSSEE
T ss_pred             EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CC-EEEEEEecCCeE
Confidence            34455554  3566788867777777776655  578889887653322221111000123323 22 343333667999


Q ss_pred             EEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeCCCCcee------eEEcCCCCCEE
Q 024372          171 RLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTES------ASLEPKLGNIF  243 (268)
Q Consensus       171 ~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~  243 (268)
                      .+||..+.+.+.++.....--.++  .||+.+..+ ....+.++|..+++..+.......-..      +-+.  +|..+
T Consensus       113 f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i--~G~Iy  188 (264)
T PF05096_consen  113 FVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI--NGKIY  188 (264)
T ss_dssp             EEEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE--TTEEE
T ss_pred             EEEccccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE--cCEEE
Confidence            999999999998887655544555  455555444 457999999999888776654321111      1111  35555


Q ss_pred             EeccCCCeEEEEECCCCcEEeec
Q 024372          244 IAGGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       244 ~~gs~d~~i~~wd~~~g~~~~~~  266 (268)
                      +=.=....|...|..+|+.+...
T Consensus       189 ANVW~td~I~~Idp~tG~V~~~i  211 (264)
T PF05096_consen  189 ANVWQTDRIVRIDPETGKVVGWI  211 (264)
T ss_dssp             EEETTSSEEEEEETTT-BEEEEE
T ss_pred             EEeCCCCeEEEEeCCCCeEEEEE
Confidence            54434455778899999887753

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.80  E-value=0.41  Score=43.95  Aligned_cols=171  Identities=14%  Similarity=0.111  Sum_probs=90.6

Q ss_pred             CCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEee------CCCcEEEEeCCCCCeeeeeccCCeEEEEEECCC
Q 024372           40 DSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS------ADFTAKLWDALTGDEKHSFEHKHIVRACAFSED  113 (268)
Q Consensus        40 d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s------~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~  113 (268)
                      +|.+.-.+....+.+...-+....+...+++|++..+|...      .|..-.||-...+.....+........-.|+|+
T Consensus       328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~~~t~PsWspD  407 (591)
T PRK13616        328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGHSLTRPSWSLD  407 (591)
T ss_pred             CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCCCCCCceECCC
Confidence            66665443322222222223334567888999998876544      244444553322222232222333666779999


Q ss_pred             CCEEEEeeCC------------CeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEE---EeCCCC
Q 024372          114 THLLLTGGFE------------KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRL---WDARSG  178 (268)
Q Consensus       114 ~~~l~s~~~d------------~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~i---wd~~~~  178 (268)
                      +..+.+....            +.+.+.+++.++..  .  ...+.|..+.|+|++..++...  ++.|.+   -....|
T Consensus       408 G~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~--~--~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G  481 (591)
T PRK13616        408 ADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVA--S--RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDG  481 (591)
T ss_pred             CCceEEEecCcceEEEeccCCCceEEEEeccCchhh--h--ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCC
Confidence            8877766432            22322233322211  1  2345799999999998776554  367766   443445


Q ss_pred             ce-E---Eeec--CCCCEEEEEECCCCcEEEEeCC--CeEEEEeCC
Q 024372          179 KI-V---QTLE--TKSPVTSAEVSRDGRYITTADG--SSVKFWDAN  216 (268)
Q Consensus       179 ~~-~---~~~~--~~~~v~~~~~s~~g~~l~~~~~--~~v~~wd~~  216 (268)
                      +. +   ..+.  ....+.++.|.+++.+++...+  ..+...++.
T Consensus       482 ~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vD  527 (591)
T PRK13616        482 QYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLD  527 (591)
T ss_pred             ceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecC
Confidence            41 1   1121  1223578999999997765443  334444443

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.77  E-value=0.26  Score=41.30  Aligned_cols=212  Identities=16%  Similarity=0.130  Sum_probs=119.4

Q ss_pred             CcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeec------cCCe
Q 024372           31 GFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE------HKHI  104 (268)
Q Consensus        31 g~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~------~~~~  104 (268)
                      +.++.+--..+.+.-|+..+++.. .+..... +.++..-.++..|+++  ++-+.+++..++..+..+.      ....
T Consensus        37 ~~L~w~DI~~~~i~r~~~~~g~~~-~~~~p~~-~~~~~~~d~~g~Lv~~--~~g~~~~~~~~~~~~t~~~~~~~~~~~~r  112 (307)
T COG3386          37 GALLWVDILGGRIHRLDPETGKKR-VFPSPGG-FSSGALIDAGGRLIAC--EHGVRLLDPDTGGKITLLAEPEDGLPLNR  112 (307)
T ss_pred             CEEEEEeCCCCeEEEecCCcCceE-EEECCCC-cccceeecCCCeEEEE--ccccEEEeccCCceeEEeccccCCCCcCC
Confidence            335666666677777887766432 3432222 2333333334445554  4456677765555423221      1123


Q ss_pred             EEEEEECCCCCEEEEeeC-----------CCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEE
Q 024372          105 VRACAFSEDTHLLLTGGF-----------EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLW  173 (268)
Q Consensus       105 v~~v~~~~~~~~l~s~~~-----------d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iw  173 (268)
                      .+.+...|+|.+-++.-.           -+.+..+|.. + ...+....+-.--+.++|+|++..++.+=+..+.|.-+
T Consensus       113 ~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g-~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~  190 (307)
T COG3386         113 PNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-G-GVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRY  190 (307)
T ss_pred             CCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-C-CEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEE
Confidence            456777888876554332           0223344431 1 11222222222346789999998888777766888888


Q ss_pred             eCCC--Cce-----EEeec-CCCCEEEEEECCCCcEEEEe-CC-CeEEEEeCCCceeeeEEeCC-CCceeeEEcCC-CCC
Q 024372          174 DARS--GKI-----VQTLE-TKSPVTSAEVSRDGRYITTA-DG-SSVKFWDANHFGLVKGYNMP-CNTESASLEPK-LGN  241 (268)
Q Consensus       174 d~~~--~~~-----~~~~~-~~~~v~~~~~s~~g~~l~~~-~~-~~v~~wd~~~~~~~~~~~~~-~~~~~~~~~~~-~~~  241 (268)
                      ++..  +..     ...+. ..+..-.+++..+|.+.++. .+ ..|..|+.+ ++++..+..| ..+..++|-.+ .+.
T Consensus       191 ~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~  269 (307)
T COG3386         191 DLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNT  269 (307)
T ss_pred             ecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCE
Confidence            7752  211     11111 22446678888899888544 33 489999998 8889999988 45556666533 355


Q ss_pred             EEEeccCC
Q 024372          242 IFIAGGED  249 (268)
Q Consensus       242 ~~~~gs~d  249 (268)
                      +|+++...
T Consensus       270 L~iTs~~~  277 (307)
T COG3386         270 LYITSARS  277 (307)
T ss_pred             EEEEecCC
Confidence            66665543

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.74  E-value=0.22  Score=40.07  Aligned_cols=102  Identities=14%  Similarity=0.068  Sum_probs=72.9

Q ss_pred             cEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeeccCCeEEE-EEE
Q 024372           32 FFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRA-CAF  110 (268)
Q Consensus        32 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~-v~~  110 (268)
                      .+++.||..+.++--|.++|..+=+-. -..++.+-+.- -+++++-|...+.+++-+.+++.....+.-.+.|.+ ...
T Consensus        24 T~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~  101 (354)
T KOG4649|consen   24 TLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQC  101 (354)
T ss_pred             eEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEE
Confidence            488899999999888999987542110 01222222221 367789999999999999999987777655554442 235


Q ss_pred             CCCCCEEEEeeCCCeEEEEECCCCC
Q 024372          111 SEDTHLLLTGGFEKILRIFDLNRPD  135 (268)
Q Consensus       111 ~~~~~~l~s~~~d~~i~~~d~~~~~  135 (268)
                      .+++..+..|+-|++....|..+..
T Consensus       102 d~~~glIycgshd~~~yalD~~~~~  126 (354)
T KOG4649|consen  102 DFDGGLIYCGSHDGNFYALDPKTYG  126 (354)
T ss_pred             cCCCceEEEecCCCcEEEecccccc
Confidence            7789999999999999999976543

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.43  E-value=0.47  Score=39.99  Aligned_cols=195  Identities=17%  Similarity=0.175  Sum_probs=107.1

Q ss_pred             CCCcEEEEE--eCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCC-CCCeeeee----c-
Q 024372           29 PDGFFLVSA--SKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL-TGDEKHSF----E-  100 (268)
Q Consensus        29 ~dg~~l~s~--s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~-~~~~~~~~----~-  100 (268)
                      .||+++...  +-.-.|-|-|+..++.+.++.-  .....+ |.....-+.+-+.||.+.-..+. .++....-    . 
T Consensus       104 ~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~--PGC~~i-yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~  180 (342)
T PF06433_consen  104 ADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT--PGCWLI-YPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDP  180 (342)
T ss_dssp             TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG--TSEEEE-EEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESST
T ss_pred             cCCcEEEEEccCCCCeEEEEECCCCceeeeecC--CCEEEE-EecCCCceEEEecCCceEEEEECCCCCEeEeeccccCC
Confidence            466666554  3334566778888888777742  111111 22122346677889988887775 44443221    1 


Q ss_pred             cCCeEE-EEEECCCCCEEEEeeCCCeEEEEECCCCCCCCe-EecC------Ccc----cEEEEEEeCCCCcEEEEe--eC
Q 024372          101 HKHIVR-ACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR-EVGN------SSG----SIRTVAWLHSDQTILSSC--TD  166 (268)
Q Consensus       101 ~~~~v~-~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~-~~~~------~~~----~v~~~~~~~~~~~~~~~~--~~  166 (268)
                      ..+++. .-.+...+..++-.+++|.++-.|+........ ....      ..+    .-.-+++.+..+.+++.-  ..
T Consensus       181 ~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~  260 (342)
T PF06433_consen  181 DDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGG  260 (342)
T ss_dssp             TTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--
T ss_pred             CCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCC
Confidence            112221 223333444555568888888877754321110 0000      001    111245555444443321  11


Q ss_pred             C-------CeEEEEeCCCCceEEeecCCCCEEEEEECCCCc-EEE-Ee-CCCeEEEEeCCCceeeeEEeC
Q 024372          167 S-------GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGR-YIT-TA-DGSSVKFWDANHFGLVKGYNM  226 (268)
Q Consensus       167 d-------~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~-~~-~~~~v~~wd~~~~~~~~~~~~  226 (268)
                      +       .+|-++|+.+++.+..++...++.++.++.+.+ +|. .. .++.+.+||..+++.++....
T Consensus       261 ~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  261 EGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred             CCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence            1       258888999999999888766788999999876 443 33 468999999999988876653

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.42  E-value=0.011  Score=34.40  Aligned_cols=42  Identities=24%  Similarity=0.296  Sum_probs=32.8

Q ss_pred             eeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEE
Q 024372          220 LVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (268)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~  263 (268)
                      .+.....+..+....++| ..++++.|..||.|.+|++ +++.+
T Consensus         4 ~~~~k~l~~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl-~~qri   45 (47)
T PF12894_consen    4 QLGEKNLPSRVSCMSWCP-TMDLIALGTEDGEVLVYRL-NWQRI   45 (47)
T ss_pred             eecccCCCCcEEEEEECC-CCCEEEEEECCCeEEEEEC-CCcCc
Confidence            344445556667788888 5899999999999999999 77764

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.41  E-value=0.011  Score=46.26  Aligned_cols=139  Identities=14%  Similarity=0.141  Sum_probs=74.6

Q ss_pred             EeeCCCcEEEEeCCCCCeeeee--ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeC
Q 024372           78 SGSADFTAKLWDALTGDEKHSF--EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLH  155 (268)
Q Consensus        78 s~s~D~~v~iw~~~~~~~~~~~--~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~  155 (268)
                      .-+.|+.|+-+++...+....-  .+...-..   ..-+..++.|..++.+.+|..+...............+.+..-.-
T Consensus        35 ~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v---~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~  111 (238)
T KOG2444|consen   35 ATSADGLVRERKVRKHKESCRSERFIDEGQRV---VTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNG  111 (238)
T ss_pred             cccCCcccccchhhhhhhhhhhhhhhhcceee---cccCceEEeecccceEEEecCCccchHHHhhhcccccceeccccc
Confidence            3456777777776443321111  11111111   112456788999999999987632211111111111222221112


Q ss_pred             CCCcEEEEeeCCCeEEEEeCCCCceEEeecCCC--CEEEEEECCCCcEEEE---eCCCeEEEEeCCCce
Q 024372          156 SDQTILSSCTDSGGVRLWDARSGKIVQTLETKS--PVTSAEVSRDGRYITT---ADGSSVKFWDANHFG  219 (268)
Q Consensus       156 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~--~v~~~~~s~~g~~l~~---~~~~~v~~wd~~~~~  219 (268)
                      +...+.-++..++.||.|++.-.+.+-...++.  +......+..++++..   +.+..++.|++....
T Consensus       112 ~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~  180 (238)
T KOG2444|consen  112 RDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIK  180 (238)
T ss_pred             cccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhhh
Confidence            222355555667999999998877766554433  4555555555556543   457788888886543

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=96.37  E-value=0.008  Score=55.41  Aligned_cols=106  Identities=16%  Similarity=0.170  Sum_probs=75.4

Q ss_pred             EEEecCCCCCcEEEEEe----CCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeee
Q 024372           22 LFYSPITPDGFFLVSAS----KDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKH   97 (268)
Q Consensus        22 ~~f~~~~~dg~~l~s~s----~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~   97 (268)
                      ..|+|..|   ++|.++    ..|.+-|+- ++|+..+... ..-.+.+++|+|....|+.|-.-|.+-+|...+.+...
T Consensus        21 ~SWHPseP---lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ht   95 (1416)
T KOG3617|consen   21 SSWHPSEP---LFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHT   95 (1416)
T ss_pred             cccCCCCc---eeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeee
Confidence            45676555   566553    445666663 4555332211 01124558899988888998888999999987765543


Q ss_pred             e-eccCCeEEEEEECCCCCEEEEeeCCCeEEEEECC
Q 024372           98 S-FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLN  132 (268)
Q Consensus        98 ~-~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~  132 (268)
                      . ..|+.++..+.|+++|..++++..-|.+.+|-..
T Consensus        96 v~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   96 VVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             eccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            3 3588999999999999999999999999999653

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.27  E-value=0.13  Score=45.30  Aligned_cols=137  Identities=15%  Similarity=0.184  Sum_probs=90.5

Q ss_pred             EEEEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEEECCCC--------CEEEEeeCCCeEEEEECCCCCC-CCeEecCC-
Q 024372           75 FSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDT--------HLLLTGGFEKILRIFDLNRPDA-PPREVGNS-  144 (268)
Q Consensus        75 ~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~--------~~l~s~~~d~~i~~~d~~~~~~-~~~~~~~~-  144 (268)
                      ++.++..-..++--|+++++.+..+....-|+-+.+.|+.        +.| .|-.|+.+.-||++.... ...-...+ 
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~Tl-vGLs~n~vfriDpRv~~~~kl~~~q~kq  426 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTL-VGLSDNSVFRIDPRVQGKNKLAVVQSKQ  426 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccE-EeecCCceEEecccccCcceeeeeeccc
Confidence            4456666677888899999999998876667777777754        222 366677788899874322 11111111 


Q ss_pred             ---cccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceE-EeecC-CCCEEEEEECCCCcEEEEeCCCeEEEEeC
Q 024372          145 ---SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIV-QTLET-KSPVTSAEVSRDGRYITTADGSSVKFWDA  215 (268)
Q Consensus       145 ---~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~-~~~~~-~~~v~~~~~s~~g~~l~~~~~~~v~~wd~  215 (268)
                         .....|++-- .+++++ .|+.+|-||+||- .+..- ..++. ..+|..+..+.+|+++++.-+..+.+-|+
T Consensus       427 y~~k~nFsc~aTT-~sG~Iv-vgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t  499 (644)
T KOG2395|consen  427 YSTKNNFSCFATT-ESGYIV-VGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDT  499 (644)
T ss_pred             cccccccceeeec-CCceEE-EeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEE
Confidence               1223455543 334444 4566799999996 44433 33443 46799999999999998887778887776

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.12  E-value=0.35  Score=44.36  Aligned_cols=108  Identities=18%  Similarity=0.348  Sum_probs=68.0

Q ss_pred             EEEecCCCcEEEEeeCCCcEEEEeCCCCCeeee--eccCCeEEEEEE--CCCCCEEEEeeCCCeEEEEECCC-------C
Q 024372           66 SCCLDANALFSASGSADFTAKLWDALTGDEKHS--FEHKHIVRACAF--SEDTHLLLTGGFEKILRIFDLNR-------P  134 (268)
Q Consensus        66 ~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~--~~~~~~v~~v~~--~~~~~~l~s~~~d~~i~~~d~~~-------~  134 (268)
                      -+.-+.-++..+.-+....+.|||...+.....  +...+.|..+.|  .|+++.+++.++.+.|.+|....       +
T Consensus        34 li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p  113 (631)
T PF12234_consen   34 LISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGP  113 (631)
T ss_pred             eEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCc
Confidence            333444444444444456899999988774333  344678999988  55899999999999999996421       1


Q ss_pred             C-CCCeEe--c-CCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCC
Q 024372          135 D-APPREV--G-NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR  176 (268)
Q Consensus       135 ~-~~~~~~--~-~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~  176 (268)
                      . ...+.+  . ....+|....|.++|. ++++ ++ +.+.|+|-.
T Consensus       114 ~w~~i~~i~i~~~T~h~Igds~Wl~~G~-LvV~-sG-Nqlfv~dk~  156 (631)
T PF12234_consen  114 SWAPIRKIDISSHTPHPIGDSIWLKDGT-LVVG-SG-NQLFVFDKW  156 (631)
T ss_pred             ccceeEEEEeecCCCCCccceeEecCCe-EEEE-eC-CEEEEECCC
Confidence            1 111111  1 1224678889987764 4433 33 789999753

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.10  E-value=0.21  Score=45.73  Aligned_cols=106  Identities=18%  Similarity=0.229  Sum_probs=68.8

Q ss_pred             EEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEe--CCCCcEEEEeeCCCeEEEEeC-C--------
Q 024372          108 CAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWL--HSDQTILSSCTDSGGVRLWDA-R--------  176 (268)
Q Consensus       108 v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~d~~i~iwd~-~--------  176 (268)
                      +.-+.-++..+.-+....+.+||.+.+.....+.-...+.|..+.|.  |+++.+++.|.. +.|.++.- |        
T Consensus        35 i~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~-~~v~l~~Q~R~dy~~~~p  113 (631)
T PF12234_consen   35 ISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFP-HHVLLYTQLRYDYTNKGP  113 (631)
T ss_pred             EeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcC-cEEEEEEccchhhhcCCc
Confidence            33444555555555667899999876553333332446789999885  677888988877 78888853 1        


Q ss_pred             CCceEEeec---C-CCCEEEEEECCCCcEEEEeCCCeEEEEeC
Q 024372          177 SGKIVQTLE---T-KSPVTSAEVSRDGRYITTADGSSVKFWDA  215 (268)
Q Consensus       177 ~~~~~~~~~---~-~~~v~~~~~s~~g~~l~~~~~~~v~~wd~  215 (268)
                      +-..++.+.   . ..++.+..|.++|.++++++ ..+.++|-
T Consensus       114 ~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG-Nqlfv~dk  155 (631)
T PF12234_consen  114 SWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG-NQLFVFDK  155 (631)
T ss_pred             ccceeEEEEeecCCCCCccceeEecCCeEEEEeC-CEEEEECC
Confidence            112233332   1 24688899999998776554 47777764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.09  E-value=0.022  Score=44.64  Aligned_cols=102  Identities=9%  Similarity=0.075  Sum_probs=60.5

Q ss_pred             CcEEEEEeCCCCeEEeeCCC-CCeEEEeeC-ccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeec-cC-CeEE
Q 024372           31 GFFLVSASKDSSPMLRNGET-GDWIGTFEG-HKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HK-HIVR  106 (268)
Q Consensus        31 g~~l~s~s~d~~i~iw~~~~-~~~~~~~~~-h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~-~~-~~v~  106 (268)
                      +.-|++|+.++.+.+|.... |........ -+.....+....++.+..+++.|+.+|.|++..++...... |. .++.
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e  149 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE  149 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence            45789999999999987652 111111111 11222223333445577899999999999998877665543 33 2333


Q ss_pred             EEEECCCCCEEEEe--eCCCeEEEEECC
Q 024372          107 ACAFSEDTHLLLTG--GFEKILRIFDLN  132 (268)
Q Consensus       107 ~v~~~~~~~~l~s~--~~d~~i~~~d~~  132 (268)
                      ....+..++.++.+  |.|..++.|++.
T Consensus       150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  150 ELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             eeEEecCCceEEeeccccchhhhhcchh
Confidence            33333444555555  666667777664

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.07  E-value=0.59  Score=38.00  Aligned_cols=111  Identities=16%  Similarity=0.174  Sum_probs=72.3

Q ss_pred             EEEEeCCCCcEEEEeeCCC--eEEEEeCCCCceEEeec--CCCCEEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEe
Q 024372          150 TVAWLHSDQTILSSCTDSG--GVRLWDARSGKIVQTLE--TKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYN  225 (268)
Q Consensus       150 ~~~~~~~~~~~~~~~~~d~--~i~iwd~~~~~~~~~~~--~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~  225 (268)
                      .+.|.+++..+-++|-. |  .|+.+|+.+++..+...  ....-..+++..|.-+..+=.++..-+||..+++.+.++.
T Consensus        49 GL~~~~~g~LyESTG~y-G~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~  127 (264)
T PF05096_consen   49 GLEFLDDGTLYESTGLY-GQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTFP  127 (264)
T ss_dssp             EEEEEETTEEEEEECST-TEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE
T ss_pred             cEEecCCCEEEEeCCCC-CcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEEEe
Confidence            45555555555555544 4  79999999999876554  3344667777777655556567899999999999999999


Q ss_pred             CCCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEe
Q 024372          226 MPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIA  264 (268)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~  264 (268)
                      ++..-.-++  . +++.|+.......++.+|.++-+++.
T Consensus       128 y~~EGWGLt--~-dg~~Li~SDGS~~L~~~dP~~f~~~~  163 (264)
T PF05096_consen  128 YPGEGWGLT--S-DGKRLIMSDGSSRLYFLDPETFKEVR  163 (264)
T ss_dssp             -SSS--EEE--E-CSSCEEEE-SSSEEEEE-TTT-SEEE
T ss_pred             cCCcceEEE--c-CCCEEEEECCccceEEECCcccceEE
Confidence            876555555  3 35555555445569999987655543

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=96.03  E-value=1.5  Score=41.87  Aligned_cols=246  Identities=12%  Similarity=0.102  Sum_probs=129.2

Q ss_pred             CCCeeeEEEecCCCCCc---EEEEEeCCCCeEEe-eCCCCCeEEE--eeCcc--CcEEEEEecCCCcEEEEeeCCCcEEE
Q 024372           16 SRPVVDLFYSPITPDGF---FLVSASKDSSPMLR-NGETGDWIGT--FEGHK--GAVWSCCLDANALFSASGSADFTAKL   87 (268)
Q Consensus        16 ~~~v~~~~f~~~~~dg~---~l~s~s~d~~i~iw-~~~~~~~~~~--~~~h~--~~V~~~~~~~~~~~l~s~s~D~~v~i   87 (268)
                      +..|.|++++|.-.+.+   .++.|.++..+++- -..+...+..  +.+..  ..|...++-.+..+|..+..||.+..
T Consensus       530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~  609 (1096)
T KOG1897|consen  530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY  609 (1096)
T ss_pred             cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence            34789999998743444   79999999887653 2233333322  22221  23455567677788888999999886


Q ss_pred             E--eCCCCCeeee---eccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEE-EEe-CCCCcE
Q 024372           88 W--DALTGDEKHS---FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTV-AWL-HSDQTI  160 (268)
Q Consensus        88 w--~~~~~~~~~~---~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~-~~~-~~~~~~  160 (268)
                      +  |..+++....   .--..|+.--.|+..++.-+-+..|+-.-+|..+. +....-. . -..+..+ .|+ +..+-.
T Consensus       610 fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~-kLv~spl-s-~kev~~~c~f~s~a~~d~  686 (1096)
T KOG1897|consen  610 FVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNG-KLVYSPL-S-LKEVNHMCPFNSDAYPDS  686 (1096)
T ss_pred             EEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCC-cEEEecc-c-hHHhhhhcccccccCCce
Confidence            6  4444442111   11122333333444333333334444444554321 1110000 0 0011111 122 222223


Q ss_pred             EEEeeCCCeEEEEeCCCCce--EEeecCCCCEEEEEECCCCcEEEEeCC------C---------eEEEEeCCCceeeeE
Q 024372          161 LSSCTDSGGVRLWDARSGKI--VQTLETKSPVTSAEVSRDGRYITTADG------S---------SVKFWDANHFGLVKG  223 (268)
Q Consensus       161 ~~~~~~d~~i~iwd~~~~~~--~~~~~~~~~v~~~~~s~~g~~l~~~~~------~---------~v~~wd~~~~~~~~~  223 (268)
                      ++.+.. +.+++.-+..-+.  +++++.+..+..+++.+....+....+      +         -++++|-.+++.+..
T Consensus       687 l~~~~~-~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~  765 (1096)
T KOG1897|consen  687 LASANG-GALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSS  765 (1096)
T ss_pred             EEEecC-CceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEee
Confidence            444444 7888876654322  345666677778888874443332211      1         377888888877766


Q ss_pred             EeCCCCc--e---eeEEcCCCCCEEEeccC----------CCeEEEEECCCCcEEee
Q 024372          224 YNMPCNT--E---SASLEPKLGNIFIAGGE----------DMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       224 ~~~~~~~--~---~~~~~~~~~~~~~~gs~----------d~~i~~wd~~~g~~~~~  265 (268)
                      +......  .   ++.+..+.+.+++.|..          .|.|.+|.+..++.+..
T Consensus       766 hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~  822 (1096)
T KOG1897|consen  766 HEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLEL  822 (1096)
T ss_pred             ccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceee
Confidence            6554332  2   22344544777777642          36788888876554443

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=96.01  E-value=0.24  Score=43.70  Aligned_cols=130  Identities=15%  Similarity=0.186  Sum_probs=79.6

Q ss_pred             CCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCc--------EEEEeeCCCcEEEEeCC-CCCeeeeeccCCeEEEEEEC
Q 024372           41 SSPMLRNGETGDWIGTFEGHKGAVWSCCLDANAL--------FSASGSADFTAKLWDAL-TGDEKHSFEHKHIVRACAFS  111 (268)
Q Consensus        41 ~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~--------~l~s~s~D~~v~iw~~~-~~~~~~~~~~~~~v~~v~~~  111 (268)
                      ..+.-.|++.|+.+.++.-|...|  +.|.|..+        -|+ |-.|..|.--|.. .+..+...+.+..++.-.|+
T Consensus       490 ~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v~esKdY~tKn~Fs  566 (776)
T COG5167         490 DKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKVVESKDYKTKNKFS  566 (776)
T ss_pred             ccceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceEE-eecccceEEecccccCCceeeeeehhcccccccc
Confidence            344445778888888888886654  66777532        233 3334444333433 33333333333333333332


Q ss_pred             C----CCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCC
Q 024372          112 E----DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR  176 (268)
Q Consensus       112 ~----~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~  176 (268)
                      .    ..-+++.++..|.||+||- -+..-...+......|..+....+|.+++++|-  .++.+-|++
T Consensus       567 s~~tTesGyIa~as~kGDirLyDR-ig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk--~yllL~d~~  632 (776)
T COG5167         567 SGMTTESGYIAAASRKGDIRLYDR-IGKRAKTALPGLGDAIKHIDVTANGKHILATCK--NYLLLTDVP  632 (776)
T ss_pred             ccccccCceEEEecCCCceeeehh-hcchhhhcCcccccceeeeEeecCCcEEEEeec--ceEEEEecc
Confidence            2    3457899999999999993 222222334445567888888899999999983  688888885

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=95.91  E-value=1.3  Score=40.27  Aligned_cols=186  Identities=18%  Similarity=0.184  Sum_probs=105.9

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCeeeeeccCCe--EE----------EEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEe
Q 024372           74 LFSASGSADFTAKLWDALTGDEKHSFEHKHI--VR----------ACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV  141 (268)
Q Consensus        74 ~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~--v~----------~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~  141 (268)
                      ..+..++.++.|+-.|..+++.+-.+.....  +.          .+.+  .+..++.++.|+.+.-+|..+++...+..
T Consensus        70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~~  147 (527)
T TIGR03075        70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSKK  147 (527)
T ss_pred             CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeecc
Confidence            3445566678899999999988777653221  11          1111  23456677888988888987776443322


Q ss_pred             c-CCc-c-cEEEEEEeCCCCcEEEEee-----CCCeEEEEeCCCCceEEeecCCC-------------------------
Q 024372          142 G-NSS-G-SIRTVAWLHSDQTILSSCT-----DSGGVRLWDARSGKIVQTLETKS-------------------------  188 (268)
Q Consensus       142 ~-~~~-~-~v~~~~~~~~~~~~~~~~~-----~d~~i~iwd~~~~~~~~~~~~~~-------------------------  188 (268)
                      . .+. + .+.+--... ++.+++..+     .+|.|.-+|.++|+.+-.+....                         
T Consensus       148 ~~~~~~~~~~tssP~v~-~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~  226 (527)
T TIGR03075       148 NGDYKAGYTITAAPLVV-KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGD  226 (527)
T ss_pred             cccccccccccCCcEEE-CCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCC
Confidence            1 111 0 111100011 234444332     25789999999999876543210                         


Q ss_pred             --------CEEEEEECCCCcEEE--EeC----CC-----------eEEEEeCCCceeeeEEeC-CC---------Cceee
Q 024372          189 --------PVTSAEVSRDGRYIT--TAD----GS-----------SVKFWDANHFGLVKGYNM-PC---------NTESA  233 (268)
Q Consensus       189 --------~v~~~~~s~~g~~l~--~~~----~~-----------~v~~wd~~~~~~~~~~~~-~~---------~~~~~  233 (268)
                              ......+.|...++.  ++.    ++           .|.--|+++++..-.|+. +.         .....
T Consensus       227 ~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~  306 (527)
T TIGR03075       227 AWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILF  306 (527)
T ss_pred             ccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEE
Confidence                    122345555544332  222    11           466678888877666654 21         12222


Q ss_pred             EEcCCCCC---EEEeccCCCeEEEEECCCCcEE
Q 024372          234 SLEPKLGN---IFIAGGEDMWVHVFDFHTGEQI  263 (268)
Q Consensus       234 ~~~~~~~~---~~~~gs~d~~i~~wd~~~g~~~  263 (268)
                      .. +.+|+   .++.+..++.+++.|-.||+.+
T Consensus       307 d~-~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       307 DL-KKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             Ee-ccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            22 22455   7778999999999999999986

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.75  E-value=1.2  Score=38.79  Aligned_cols=175  Identities=19%  Similarity=0.239  Sum_probs=83.8

Q ss_pred             CCCcEEEEEeCC------CCeEEeeCCCCCeEEEeeCccC---cEEEEEecCCCcEEEEeeC------------------
Q 024372           29 PDGFFLVSASKD------SSPMLRNGETGDWIGTFEGHKG---AVWSCCLDANALFSASGSA------------------   81 (268)
Q Consensus        29 ~dg~~l~s~s~d------~~i~iw~~~~~~~~~~~~~h~~---~V~~~~~~~~~~~l~s~s~------------------   81 (268)
                      |+|.+++|+-.|      |-+.+.|.++-+.........+   --+..-+.|....++|..+                  
T Consensus       139 p~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~  218 (461)
T PF05694_consen  139 PDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAG  218 (461)
T ss_dssp             SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH
T ss_pred             CCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcc
Confidence            578888887322      2345677777777777754322   2345556777777777654                  


Q ss_pred             --CCcEEEEeCCCCCeeeeeccCC---eEEEEEE--CCCCCEEEEee--CCCeEEEEECCCCCCCC---eEecC------
Q 024372           82 --DFTAKLWDALTGDEKHSFEHKH---IVRACAF--SEDTHLLLTGG--FEKILRIFDLNRPDAPP---REVGN------  143 (268)
Q Consensus        82 --D~~v~iw~~~~~~~~~~~~~~~---~v~~v~~--~~~~~~l~s~~--~d~~i~~~d~~~~~~~~---~~~~~------  143 (268)
                        .+++.+||+.+.+.++++...+   ...-+.|  .|+...-++|+  .....++|-...++...   ..+..      
T Consensus       219 ~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~  298 (461)
T PF05694_consen  219 KYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGW  298 (461)
T ss_dssp             -S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS
T ss_pred             cccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcc
Confidence              3689999999999999887542   2334455  44444333332  22333333322221100   01100      


Q ss_pred             ---C--------cccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCC-c--eEEeecC-----------------CCCEEE
Q 024372          144 ---S--------SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG-K--IVQTLET-----------------KSPVTS  192 (268)
Q Consensus       144 ---~--------~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~-~--~~~~~~~-----------------~~~v~~  192 (268)
                         .        .+-++.|..+.++..+.+++.-+|.||-||+..- .  .+.++..                 .+..+-
T Consensus       299 ~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqM  378 (461)
T PF05694_consen  299 ILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQM  378 (461)
T ss_dssp             ---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----
T ss_pred             cccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCe
Confidence               0        1346788889999999999999999999999653 2  2222211                 123467


Q ss_pred             EEECCCCcEEE
Q 024372          193 AEVSRDGRYIT  203 (268)
Q Consensus       193 ~~~s~~g~~l~  203 (268)
                      +.+|.||+.|-
T Consensus       379 vqlS~DGkRlY  389 (461)
T PF05694_consen  379 VQLSLDGKRLY  389 (461)
T ss_dssp             EEE-TTSSEEE
T ss_pred             EEEccCCeEEE
Confidence            88899998763

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PHA02713 hypothetical protein; Provisional

Probab=95.66  E-value=0.59  Score=42.75  Aligned_cols=92  Identities=13%  Similarity=0.028  Sum_probs=43.4

Q ss_pred             CCcEEEEEeCC------CCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCC-----cEEEEeCCCCCeee-
Q 024372           30 DGFFLVSASKD------SSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADF-----TAKLWDALTGDEKH-   97 (268)
Q Consensus        30 dg~~l~s~s~d------~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~-----~v~iw~~~~~~~~~-   97 (268)
                      ++...+.|+.+      .++..||..++++...-.-....-.......++.+.+.||.++     ++..||..++.=.. 
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~  382 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML  382 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence            45566666653      2345677777765321111111111111233566667777654     47778876653211 


Q ss_pred             -eeccCCe-EEEEEECCCCCEEEEeeCC
Q 024372           98 -SFEHKHI-VRACAFSEDTHLLLTGGFE  123 (268)
Q Consensus        98 -~~~~~~~-v~~v~~~~~~~~l~s~~~d  123 (268)
                       ....+.. ...+.  -++++.+.|+.+
T Consensus       383 ~~mp~~r~~~~~~~--~~g~IYviGG~~  408 (557)
T PHA02713        383 PDMPIALSSYGMCV--LDQYIYIIGGRT  408 (557)
T ss_pred             CCCCcccccccEEE--ECCEEEEEeCCC
Confidence             1111111 11122  257777777755

>PHA03098 kelch-like protein; Provisional

Probab=95.58  E-value=0.86  Score=41.41  Aligned_cols=184  Identities=13%  Similarity=0.106  Sum_probs=82.5

Q ss_pred             CCcEEEEeeCCC------cEEEEeCCCCCeeeeeccC---CeEEEEEECCCCCEEEEeeCC-----CeEEEEECCCCCCC
Q 024372           72 NALFSASGSADF------TAKLWDALTGDEKHSFEHK---HIVRACAFSEDTHLLLTGGFE-----KILRIFDLNRPDAP  137 (268)
Q Consensus        72 ~~~~l~s~s~D~------~v~iw~~~~~~~~~~~~~~---~~v~~v~~~~~~~~l~s~~~d-----~~i~~~d~~~~~~~  137 (268)
                      ++.+++.||.++      .+..||..++.-......+   .....+.  .++++.+.|+.+     ..+..||..+....
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~  371 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKWR  371 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence            455666666542      4666777655432211111   1111222  256777777765     23556776543211


Q ss_pred             C-eEecCCcccEEEEEEeCCCCcEEEEeeCC-----CeEEEEeCCCCceEE--eecCCCCEEEEEECCCCcEE-EEeCC-
Q 024372          138 P-REVGNSSGSIRTVAWLHSDQTILSSCTDS-----GGVRLWDARSGKIVQ--TLETKSPVTSAEVSRDGRYI-TTADG-  207 (268)
Q Consensus       138 ~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~d-----~~i~iwd~~~~~~~~--~~~~~~~v~~~~~s~~g~~l-~~~~~-  207 (268)
                      . ......... .+++. .++..++.+|...     +.+..||+.+.+=..  .+.....-.++ ...++++. ++|.+ 
T Consensus       372 ~~~~lp~~r~~-~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~-~~~~~~iyv~GG~~~  448 (534)
T PHA03098        372 EEPPLIFPRYN-PCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCA-IYHDGKIYVIGGISY  448 (534)
T ss_pred             eCCCcCcCCcc-ceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceE-EEECCEEEEECCccC
Confidence            0 001111111 11121 2333334443211     357888987654221  11111111122 22344444 44321 


Q ss_pred             -------CeEEEEeCCCcee--eeEEeCCCCceeeEEcCCCCCEEEeccCC-----CeEEEEECCCCcE
Q 024372          208 -------SSVKFWDANHFGL--VKGYNMPCNTESASLEPKLGNIFIAGGED-----MWVHVFDFHTGEQ  262 (268)
Q Consensus       208 -------~~v~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~gs~d-----~~i~~wd~~~g~~  262 (268)
                             ..+..||.++.+.  +.....+......+. . ++++++.||.+     ..|.+||..+.+-
T Consensus       449 ~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W  515 (534)
T PHA03098        449 IDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI-F-NNKIYVVGGDKYEYYINEIEVYDDKTNTW  515 (534)
T ss_pred             CCCCcccceEEEecCCCCceeeCCCCCcccccceEEE-E-CCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence                   1378888865432  322222211112222 2 57888888764     4689999876653

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.58  E-value=0.043  Score=31.92  Aligned_cols=31  Identities=10%  Similarity=0.095  Sum_probs=26.7

Q ss_pred             cCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeC
Q 024372           15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNG   48 (268)
Q Consensus        15 h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~   48 (268)
                      -..+|..++|+|   ...+||.|+.+|.|.++..
T Consensus        10 l~~~v~~~~w~P---~mdLiA~~t~~g~v~v~Rl   40 (47)
T PF12894_consen   10 LPSRVSCMSWCP---TMDLIALGTEDGEVLVYRL   40 (47)
T ss_pred             CCCcEEEEEECC---CCCEEEEEECCCeEEEEEC
Confidence            345799999996   6779999999999999877

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.58  E-value=1.3  Score=37.92  Aligned_cols=225  Identities=20%  Similarity=0.165  Sum_probs=113.0

Q ss_pred             CCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEE-EeeCc----------------cCcEEEEEecCCCcEEEE
Q 024372           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIG-TFEGH----------------KGAVWSCCLDANALFSAS   78 (268)
Q Consensus        16 ~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~-~~~~h----------------~~~V~~~~~~~~~~~l~s   78 (268)
                      ...+....|+|   +|+.+|-. .+..+.+++..+++.++ +..|-                -+.-.++-|+||+++||.
T Consensus        42 ~~~~~~~~~sP---~g~~~~~v-~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~  117 (353)
T PF00930_consen   42 PPKLQDAKWSP---DGKYIAFV-RDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAF  117 (353)
T ss_dssp             ETTBSEEEE-S---SSTEEEEE-ETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEE
T ss_pred             ccccccceeec---CCCeeEEE-ecCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEE
Confidence            45677888885   89888765 56788888877664332 11220                011245679999999886


Q ss_pred             eeCC-CcEEEEeC-----------------------------------CCCCeee-eec-----cCCeEEEEEECCCCCE
Q 024372           79 GSAD-FTAKLWDA-----------------------------------LTGDEKH-SFE-----HKHIVRACAFSEDTHL  116 (268)
Q Consensus        79 ~s~D-~~v~iw~~-----------------------------------~~~~~~~-~~~-----~~~~v~~v~~~~~~~~  116 (268)
                      ...| ..|+.+.+                                   .+++... ...     ....+..+.|.++++.
T Consensus       118 ~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~  197 (353)
T PF00930_consen  118 LRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKR  197 (353)
T ss_dssp             EEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEE
T ss_pred             EEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcE
Confidence            6533 33333322                                   1111100 000     1224667888888873


Q ss_pred             EEE--eeCCC---eEEEEECCCCCCCCeEecCCcccE---EEEEEe-CCCCcEEEEeeCCCe--EEEEeCCCCceEEeec
Q 024372          117 LLT--GGFEK---ILRIFDLNRPDAPPREVGNSSGSI---RTVAWL-HSDQTILSSCTDSGG--VRLWDARSGKIVQTLE  185 (268)
Q Consensus       117 l~s--~~~d~---~i~~~d~~~~~~~~~~~~~~~~~v---~~~~~~-~~~~~~~~~~~~d~~--i~iwd~~~~~~~~~~~  185 (268)
                      |+.  ...+.   .+.+.|..++...........+.+   ....+. +++..++.....+|.  |.+.+...+...+...
T Consensus       198 l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~  277 (353)
T PF00930_consen  198 LWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTS  277 (353)
T ss_dssp             EEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-
T ss_pred             EEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceecccc
Confidence            333  22222   244556655433222222222232   234444 566666555556664  5556766666444334


Q ss_pred             CCCCEEE-EEECCCCcEEE-EeC-----CCeEEEEeCCCceeeeEEeCCCCc-eeeEEcCCCCCEEEe
Q 024372          186 TKSPVTS-AEVSRDGRYIT-TAD-----GSSVKFWDANHFGLVKGYNMPCNT-ESASLEPKLGNIFIA  245 (268)
Q Consensus       186 ~~~~v~~-~~~s~~g~~l~-~~~-----~~~v~~wd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  245 (268)
                      +.-.|.. +.++++++.|. .+.     ...+..-++...+.++.+.-.... ....++| ++++++-
T Consensus       278 G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Sp-dg~y~v~  344 (353)
T PF00930_consen  278 GDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSP-DGKYYVD  344 (353)
T ss_dssp             SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-T-TSSEEEE
T ss_pred             CceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECC-CCCEEEE
Confidence            4455644 67788876542 332     235555566622333434333333 3677777 5776663

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.57  E-value=0.087  Score=50.06  Aligned_cols=95  Identities=17%  Similarity=0.202  Sum_probs=63.3

Q ss_pred             EEEEeeCCCeEEEEeCCCCce--EEeecCCCCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeCCCCceee---
Q 024372          160 ILSSCTDSGGVRLWDARSGKI--VQTLETKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTESA---  233 (268)
Q Consensus       160 ~~~~~~~d~~i~iwd~~~~~~--~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~~~~~~~---  233 (268)
                      .++.|++.|.+-..|....=.  .+-.....+|.+++|+.+|+++..| .+|.|.+||....+.++.+.....+...   
T Consensus       101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~  180 (1206)
T KOG2079|consen  101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIF  180 (1206)
T ss_pred             eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEE
Confidence            455667778888888765311  2222345789999999999998877 6789999999988888877654332222   


Q ss_pred             -EEcCCCCCEEEeccCCCeEEEEEC
Q 024372          234 -SLEPKLGNIFIAGGEDMWVHVFDF  257 (268)
Q Consensus       234 -~~~~~~~~~~~~gs~d~~i~~wd~  257 (268)
                       .... .++.+.++-..|.  +|+.
T Consensus       181 v~~t~-~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  181 VGRTS-QNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             EEEeC-CCcEEEEccCCCc--eEEE
Confidence             2223 3556666655554  4553

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.42  E-value=1.3  Score=36.97  Aligned_cols=148  Identities=11%  Similarity=0.125  Sum_probs=72.0

Q ss_pred             CCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCC-CCe
Q 024372           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT-GDE   95 (268)
Q Consensus        17 ~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~-~~~   95 (268)
                      +.+.++.-.   +||.+++.++.-.-.+-|+.-...+...-+.-...|..+.|.|++.+.+. .+.+.+++=+... ...
T Consensus       145 gs~~~~~r~---~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~-~~Gg~~~~s~~~~~~~~  220 (302)
T PF14870_consen  145 GSINDITRS---SDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWML-ARGGQIQFSDDPDDGET  220 (302)
T ss_dssp             --EEEEEE----TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEE-ETTTEEEEEE-TTEEEE
T ss_pred             ceeEeEEEC---CCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEE-eCCcEEEEccCCCCccc
Confidence            456666655   59988876655544456776544444444445678999999999876543 4888888877211 111


Q ss_pred             eee--ec---cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEec---CCcccEEEEEEeCCCCcEEEEeeCC
Q 024372           96 KHS--FE---HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG---NSSGSIRTVAWLHSDQTILSSCTDS  167 (268)
Q Consensus        96 ~~~--~~---~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~d  167 (268)
                      -..  ..   ...-+..++|.++..+.++|+....++  ....++ .-+...   ....-.+.+.|.+++.- ++-| .+
T Consensus       221 w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~--S~DgGk-tW~~~~~~~~~~~n~~~i~f~~~~~g-f~lG-~~  295 (302)
T PF14870_consen  221 WSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLV--STDGGK-TWQKDRVGENVPSNLYRIVFVNPDKG-FVLG-QD  295 (302)
T ss_dssp             E---B-TTSS--S-EEEEEESSSS-EEEEESTT-EEE--ESSTTS-S-EE-GGGTTSSS---EEEEEETTEE-EEE--ST
T ss_pred             cccccCCcccCceeeEEEEecCCCCEEEEeCCccEEE--eCCCCc-cceECccccCCCCceEEEEEcCCCce-EEEC-CC
Confidence            000  11   122378899999888888776543332  323332 222221   22234677888765443 4444 44


Q ss_pred             CeEEEE
Q 024372          168 GGVRLW  173 (268)
Q Consensus       168 ~~i~iw  173 (268)
                      |.|.-|
T Consensus       296 G~ll~~  301 (302)
T PF14870_consen  296 GVLLRY  301 (302)
T ss_dssp             TEEEEE
T ss_pred             cEEEEe
Confidence            766544

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.21  E-value=0.12  Score=49.17  Aligned_cols=100  Identities=17%  Similarity=0.216  Sum_probs=63.9

Q ss_pred             CCcEEEEeeCCCcEEEEeCCCCCe--eeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCccc--
Q 024372           72 NALFSASGSADFTAKLWDALTGDE--KHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGS--  147 (268)
Q Consensus        72 ~~~~l~s~s~D~~v~iw~~~~~~~--~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~--  147 (268)
                      .+..++.|+..|.+-..|+..+-.  ...-..+.+|.+++|+.+|..++.|-.+|.|.+||+...+ ..+.+..+..+  
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k-~l~~i~e~~ap~t  176 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAK-ILKVITEHGAPVT  176 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCc-ceeeeeecCCccc
Confidence            345677777777888877765422  2222356789999999999999999999999999987643 34444333333  


Q ss_pred             -EEEEEEeCCCCcEEEEeeCCCeEEEEeC
Q 024372          148 -IRTVAWLHSDQTILSSCTDSGGVRLWDA  175 (268)
Q Consensus       148 -v~~~~~~~~~~~~~~~~~~d~~i~iwd~  175 (268)
                       +..+.+..++. .+.++...|.  +|.+
T Consensus       177 ~vi~v~~t~~nS-~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  177 GVIFVGRTSQNS-KLLTSDTGGS--FWKL  202 (1206)
T ss_pred             eEEEEEEeCCCc-EEEEccCCCc--eEEE
Confidence             34444554444 3444333232  5654

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.08  E-value=3.2  Score=39.46  Aligned_cols=233  Identities=17%  Similarity=0.131  Sum_probs=116.0

Q ss_pred             EEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccC--------cEEEEEecC----------------CCcEEEE
Q 024372           23 FYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG--------AVWSCCLDA----------------NALFSAS   78 (268)
Q Consensus        23 ~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~--------~V~~~~~~~----------------~~~~l~s   78 (268)
                      ...|+-- +..|..++.++.+.-.|..+|+.+=++.-...        ..+.+++-.                .+..+..
T Consensus       187 e~TPlvv-gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~  265 (764)
T TIGR03074       187 QATPLKV-GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIIL  265 (764)
T ss_pred             ccCCEEE-CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEE
Confidence            3444332 34677788888888889999986544432111        012223311                2335667


Q ss_pred             eeCCCcEEEEeCCCCCeeeeeccCCeEE-------------EEEECC--CCCEEEEeeC----------CCeEEEEECCC
Q 024372           79 GSADFTAKLWDALTGDEKHSFEHKHIVR-------------ACAFSE--DTHLLLTGGF----------EKILRIFDLNR  133 (268)
Q Consensus        79 ~s~D~~v~iw~~~~~~~~~~~~~~~~v~-------------~v~~~~--~~~~l~s~~~----------d~~i~~~d~~~  133 (268)
                      +..|+.+.-.|..+++....+.....+.             ...-.|  .+..++.|+.          ++.|+-+|.++
T Consensus       266 ~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~T  345 (764)
T TIGR03074       266 PTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNT  345 (764)
T ss_pred             ecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCC
Confidence            7789999999999999887664332221             011122  1345556643          57899999988


Q ss_pred             CCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCC-eEEEEeCCCCceEEeecCCCC-EEEEEECC-CCcEEEEeCCCeE
Q 024372          134 PDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG-GVRLWDARSGKIVQTLETKSP-VTSAEVSR-DGRYITTADGSSV  210 (268)
Q Consensus       134 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~-~i~iwd~~~~~~~~~~~~~~~-v~~~~~s~-~g~~l~~~~~~~v  210 (268)
                      ++..-+........ ...  .+++. ....++... ..--+|.+.+....-.....+ ...-.-.| ++.+     .+.|
T Consensus       346 Gkl~W~~~~g~p~~-~~~--~~~g~-~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y-----~~sl  416 (764)
T TIGR03074       346 GALVWAWDPGNPDP-TAP--PAPGE-TYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKY-----SSSL  416 (764)
T ss_pred             CcEeeEEecCCCCc-ccC--CCCCC-EeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccc-----cceE
Confidence            87554433211111 000  11222 122121111 122334443332211110000 00000001 1111     2355


Q ss_pred             EEEeCCCceeeeEEeC-C---------CCceeeEEcCCCCC---EEEeccCCCeEEEEECCCCcEEee
Q 024372          211 KFWDANHFGLVKGYNM-P---------CNTESASLEPKLGN---IFIAGGEDMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       211 ~~wd~~~~~~~~~~~~-~---------~~~~~~~~~~~~~~---~~~~gs~d~~i~~wd~~~g~~~~~  265 (268)
                      .-.|.++++..-.|+. +         .......+...+|+   .++.++.++.+++.|-+||+++-.
T Consensus       417 vALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~  484 (764)
T TIGR03074       417 VALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP  484 (764)
T ss_pred             EEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence            5566666665554543 2         22222333221343   788899999999999999998754

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PHA02790 Kelch-like protein; Provisional

Probab=94.99  E-value=1.8  Score=38.87  Aligned_cols=182  Identities=9%  Similarity=0.023  Sum_probs=82.7

Q ss_pred             CCcEEEEeeCCC-----cEEEEeCCCCCeeeeec--cCC-eEEEEEECCCCCEEEEeeCC--CeEEEEECCCCCCC-CeE
Q 024372           72 NALFSASGSADF-----TAKLWDALTGDEKHSFE--HKH-IVRACAFSEDTHLLLTGGFE--KILRIFDLNRPDAP-PRE  140 (268)
Q Consensus        72 ~~~~l~s~s~D~-----~v~iw~~~~~~~~~~~~--~~~-~v~~v~~~~~~~~l~s~~~d--~~i~~~d~~~~~~~-~~~  140 (268)
                      ++.+++.||.++     ++..||..++.-....+  .+. ....+  ..++++.+.|+.+  ..+..||....... ...
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~  348 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS  348 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence            455566777543     45567776544222111  111 11112  2357777777754  34667776432110 001


Q ss_pred             ecCCcccEEEEEEeCCCCcEEEEeeCC--CeEEEEeCCCCceEEeecCCCC-EEEEEECCCCcEEEEeCCCeEEEEeCCC
Q 024372          141 VGNSSGSIRTVAWLHSDQTILSSCTDS--GGVRLWDARSGKIVQTLETKSP-VTSAEVSRDGRYITTADGSSVKFWDANH  217 (268)
Q Consensus       141 ~~~~~~~v~~~~~~~~~~~~~~~~~~d--~~i~iwd~~~~~~~~~~~~~~~-v~~~~~s~~g~~l~~~~~~~v~~wd~~~  217 (268)
                      ....... .+++. -++..++++|.+.  ..+..||.++.+=...-....+ ....+..-+|++.+.|  +.+.+||.++
T Consensus       349 l~~~r~~-~~~~~-~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G--G~~e~ydp~~  424 (480)
T PHA02790        349 LLKPRCN-PAVAS-INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG--RNAEFYCESS  424 (480)
T ss_pred             CCCCCcc-cEEEE-ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC--CceEEecCCC
Confidence            1111111 11221 2333334444221  3467788876542221111111 1122234456555544  3467788765


Q ss_pred             cee--eeEEeCCCCceeeEEcCCCCCEEEeccCC-----CeEEEEECCCCc
Q 024372          218 FGL--VKGYNMPCNTESASLEPKLGNIFIAGGED-----MWVHVFDFHTGE  261 (268)
Q Consensus       218 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~gs~d-----~~i~~wd~~~g~  261 (268)
                      ..-  +.....+......+..  +|++++.||.+     ..|.+||..+++
T Consensus       425 ~~W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~~~  473 (480)
T PHA02790        425 NTWTLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRTYS  473 (480)
T ss_pred             CcEeEcCCCCCCccccEEEEE--CCEEEEECCcCCCcccceEEEEECCCCe
Confidence            432  2222222222222222  58899999864     468899987665

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=94.95  E-value=3  Score=38.37  Aligned_cols=186  Identities=14%  Similarity=0.093  Sum_probs=88.4

Q ss_pred             CCcEEEEEeCC-C-----CeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCc-----EEEEeCCCCCeeee
Q 024372           30 DGFFLVSASKD-S-----SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFT-----AKLWDALTGDEKHS   98 (268)
Q Consensus        30 dg~~l~s~s~d-~-----~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~-----v~iw~~~~~~~~~~   98 (268)
                      +|+..++|+.| +     ++-.||..++++...-.-.......-.-.-+|.+.|.||.||.     +-.||..+.+=...
T Consensus       332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~v  411 (571)
T KOG4441|consen  332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPV  411 (571)
T ss_pred             CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCccccc
Confidence            57788899998 3     4456788888876422211111111111235777788998864     55566554432111


Q ss_pred             eccCCeEEEE-EECCCCCEEEEeeCCCe------EEEEECCCCCCCC-eEecCCcccEEEEEEeCCCCcEEEEeeCCC--
Q 024372           99 FEHKHIVRAC-AFSEDTHLLLTGGFEKI------LRIFDLNRPDAPP-REVGNSSGSIRTVAWLHSDQTILSSCTDSG--  168 (268)
Q Consensus        99 ~~~~~~v~~v-~~~~~~~~l~s~~~d~~------i~~~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~--  168 (268)
                      .+........ ...-++++.+.|+.++.      +..||..+..... ........... ++.. ++ .+.+.|+.|+  
T Consensus       412 a~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~-~~-~iYvvGG~~~~~  488 (571)
T KOG4441|consen  412 APMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVL-NG-KIYVVGGFDGTS  488 (571)
T ss_pred             CCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEEE-CC-EEEEECCccCCC
Confidence            1111111111 11236778888886654      4567765432211 01111111111 2322 23 4444444444  


Q ss_pred             ---eEEEEeCCCCceEEe--ecCCCCEEEEEECCCCcEEEEeCCC-----eEEEEeCCCc
Q 024372          169 ---GVRLWDARSGKIVQT--LETKSPVTSAEVSRDGRYITTADGS-----SVKFWDANHF  218 (268)
Q Consensus       169 ---~i~iwd~~~~~~~~~--~~~~~~v~~~~~s~~g~~l~~~~~~-----~v~~wd~~~~  218 (268)
                         +|..+|.++.+=...  +........++...+..|++++.++     +|..||..+.
T Consensus       489 ~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d  548 (571)
T KOG4441|consen  489 ALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETD  548 (571)
T ss_pred             ccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccCccccceeEEcCCCCC
Confidence               377788876653332  2111122233344444555555443     5666665543

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=94.65  E-value=0.32  Score=38.69  Aligned_cols=60  Identities=22%  Similarity=0.349  Sum_probs=41.7

Q ss_pred             CCCcEEEEeeCCCeEEEEeCCCCceEEee-------c--------CCCCEEEEEECCCCcEEEEeCCCeEEEEeCC
Q 024372          156 SDQTILSSCTDSGGVRLWDARSGKIVQTL-------E--------TKSPVTSAEVSRDGRYITTADGSSVKFWDAN  216 (268)
Q Consensus       156 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~-------~--------~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~  216 (268)
                      .+.+ +.+-+.+|.+++||+.+++++..-       .        ....+..+.++.+|.-+++-+++....||..
T Consensus        21 ~~~~-Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~   95 (219)
T PF07569_consen   21 NGSY-LLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPD   95 (219)
T ss_pred             CCCE-EEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccc
Confidence            3444 445566799999999998765332       1        2345888899999987776556677888753

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=94.62  E-value=0.23  Score=27.65  Aligned_cols=41  Identities=15%  Similarity=0.198  Sum_probs=29.6

Q ss_pred             CCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCCCEEEEEE
Q 024372          155 HSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEV  195 (268)
Q Consensus       155 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~  195 (268)
                      |+++.++++...+++|.++|+.+++.+..+........+.+
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence            45666777777789999999999888887765433444444

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=94.53  E-value=2.1  Score=34.73  Aligned_cols=195  Identities=11%  Similarity=0.158  Sum_probs=103.2

Q ss_pred             EeeCccCcEEEEEecCCCc-EEEEeeCCCcEEEEeCCCCCeeeeeccCC--eEEEEEECCCCCEEEEeeCCCeEEEEECC
Q 024372           56 TFEGHKGAVWSCCLDANAL-FSASGSADFTAKLWDALTGDEKHSFEHKH--IVRACAFSEDTHLLLTGGFEKILRIFDLN  132 (268)
Q Consensus        56 ~~~~h~~~V~~~~~~~~~~-~l~s~s~D~~v~iw~~~~~~~~~~~~~~~--~v~~v~~~~~~~~l~s~~~d~~i~~~d~~  132 (268)
                      .+.+-...+..++|.|+.. +++.....+.|.-.+. +++.++.+....  -.-.+.+..++.++++--.++.+.++++.
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            4445455699999999765 5555666777777776 467766665332  34567777777777766678889888874


Q ss_pred             CCCCC--CeE-----ec---CCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCC---CceEEee-----c----CCCCE
Q 024372          133 RPDAP--PRE-----VG---NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS---GKIVQTL-----E----TKSPV  190 (268)
Q Consensus       133 ~~~~~--~~~-----~~---~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~---~~~~~~~-----~----~~~~v  190 (268)
                      .....  ...     ..   ..+..+..++|.+.+..++++. +..-.+|+.++.   ...+...     .    ....+
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k-E~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  173 (248)
T PF06977_consen   95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK-ERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL  173 (248)
T ss_dssp             ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE-ESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred             ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe-CCCChhhEEEccccCccceeeccccccccccceeccc
Confidence            32211  111     11   1334578899999888888764 445566666543   2222211     1    12347


Q ss_pred             EEEEECCC-CcEEE-EeCCCeEEEEeCCCceeeeEEeCCC----------CceeeEEcCCCCCEEEeccCCCeEEEE
Q 024372          191 TSAEVSRD-GRYIT-TADGSSVKFWDANHFGLVKGYNMPC----------NTESASLEPKLGNIFIAGGEDMWVHVF  255 (268)
Q Consensus       191 ~~~~~s~~-g~~l~-~~~~~~v~~wd~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~gs~d~~i~~w  255 (268)
                      .++.++|. +.+++ +..++.|...| ..++.+..+....          .+.-+++.+ +|.++++. +-...|++
T Consensus       174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~-~G~LYIvs-EpNlfy~f  247 (248)
T PF06977_consen  174 SGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP-DGNLYIVS-EPNLFYRF  247 (248)
T ss_dssp             -EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-T-T--EEEEE-TTTEEEEE
T ss_pred             cceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECC-CCCEEEEc-CCceEEEe
Confidence            78889886 45544 45678888899 5566666666543          244566666 57655554 44344443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.30  E-value=3.2  Score=40.72  Aligned_cols=70  Identities=13%  Similarity=0.044  Sum_probs=40.0

Q ss_pred             EEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEe
Q 024372          190 VTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIA  264 (268)
Q Consensus       190 v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~  264 (268)
                      +.+..+-.....+....-+.+-+|+.......+.|..+....     ...++.++++-.|+.+..||+..|+.+.
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~h~Dgs~~fWd~s~g~~~~  270 (993)
T KOG1983|consen  201 SLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNGQLE-----SRDGSHFVSYHTDGSYAFWDVSSGKLQI  270 (993)
T ss_pred             cceeeeecCCCcceeeeeeeeeehhcccccchhhcccccccC-----ccCCceEEEEEecCCEEeeecCCCceee
Confidence            333333333334444444456666643332233333322211     3368999999999999999999887643

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=94.21  E-value=2.9  Score=35.09  Aligned_cols=95  Identities=19%  Similarity=0.243  Sum_probs=54.6

Q ss_pred             eEEEEeCCCCceEEeecC-CCCEEEEEECCCCcEEEEeC--CCeEEEEeCCC--c---eeeeEEeC---CCCceeeEEcC
Q 024372          169 GVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTAD--GSSVKFWDANH--F---GLVKGYNM---PCNTESASLEP  237 (268)
Q Consensus       169 ~i~iwd~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~~~--~~~v~~wd~~~--~---~~~~~~~~---~~~~~~~~~~~  237 (268)
                      .|.-.|. .+..++.+.. -...|.++||||++.+..++  .+.|.-|++..  .   .....+..   +..+...+...
T Consensus       144 ~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa  222 (307)
T COG3386         144 SLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA  222 (307)
T ss_pred             eEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC
Confidence            3444454 4555554443 34568999999997765543  36777776642  1   11111111   22334445554


Q ss_pred             CCCCEEEeccCCC-eEEEEECCCCcEEeec
Q 024372          238 KLGNIFIAGGEDM-WVHVFDFHTGEQIAIT  266 (268)
Q Consensus       238 ~~~~~~~~gs~d~-~i~~wd~~~g~~~~~~  266 (268)
                       +|.+.+++-.++ .|.+|+.. |+++..+
T Consensus       223 -dG~lw~~a~~~g~~v~~~~pd-G~l~~~i  250 (307)
T COG3386         223 -DGNLWVAAVWGGGRVVRFNPD-GKLLGEI  250 (307)
T ss_pred             -CCCEEEecccCCceEEEECCC-CcEEEEE
Confidence             577775554443 89999987 8888764

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.18  E-value=2.3  Score=37.29  Aligned_cols=153  Identities=12%  Similarity=0.080  Sum_probs=90.3

Q ss_pred             eeEEEecCCCCCcEEEEEeCCCCeEEeeCCCC--C-eEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCee
Q 024372           20 VDLFYSPITPDGFFLVSASKDSSPMLRNGETG--D-WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEK   96 (268)
Q Consensus        20 ~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~--~-~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~   96 (268)
                      +.+.|.    |.+.++-+...|.+.=|-+.-.  . .+..-...+++|.++.|++|.+.+|.--.|++|.+.+....+..
T Consensus        26 ngvFfD----DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~  101 (657)
T KOG2377|consen   26 NGVFFD----DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQ  101 (657)
T ss_pred             cceeec----cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchh
Confidence            456665    4444555666666655543321  1 22222345779999999999999999889999999998655544


Q ss_pred             eeecc-----CCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEee-CCCeE
Q 024372           97 HSFEH-----KHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT-DSGGV  170 (268)
Q Consensus        97 ~~~~~-----~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~d~~i  170 (268)
                      ....+     ...|....|..+. -+|--...| +-+|.........+....+...|+...|.++...++.+.+ ..+++
T Consensus       102 l~~~~~ck~k~~~IlGF~W~~s~-e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~l  179 (657)
T KOG2377|consen  102 LEYTQECKTKNANILGFCWTSST-EIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVL  179 (657)
T ss_pred             hHHHHHhccCcceeEEEEEecCe-eEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeecccccccc
Confidence            43332     2236677776553 344434333 5666554333344445556667888888887765444433 33444


Q ss_pred             EEEeCCCC
Q 024372          171 RLWDARSG  178 (268)
Q Consensus       171 ~iwd~~~~  178 (268)
                      .=+.++++
T Consensus       180 npf~~~~~  187 (657)
T KOG2377|consen  180 NPFHFRAG  187 (657)
T ss_pred             ccEEEeec
Confidence            33444443

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=93.96  E-value=4.1  Score=35.81  Aligned_cols=172  Identities=16%  Similarity=0.132  Sum_probs=90.4

Q ss_pred             CCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEe-------eCccCcEEEEEecCCCcEEEEeeCCCcEEEE-
Q 024372           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF-------EGHKGAVWSCCLDANALFSASGSADFTAKLW-   88 (268)
Q Consensus        17 ~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~-------~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw-   88 (268)
                      +.|.++.|.    +...|++-..||.++++|.. |+....+       .-....+....+..+|-.+.+++  +.+.+- 
T Consensus        81 ~~iv~~~wt----~~e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~--~~~~~v~  153 (410)
T PF04841_consen   81 GRIVGMGWT----DDEELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGN--NRFYVVN  153 (410)
T ss_pred             CCEEEEEEC----CCCeEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCCCEEEECCC--CeEEEEe
Confidence            677888886    34578889999999999976 4441111       11122233334444565555543  333332 


Q ss_pred             eCCCCCeeeee-c--------cCC-eEE-EEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCC
Q 024372           89 DALTGDEKHSF-E--------HKH-IVR-ACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSD  157 (268)
Q Consensus        89 ~~~~~~~~~~~-~--------~~~-~v~-~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~  157 (268)
                      +.......+.. .        +.. ... ...++.+....+....++.+.+.+-...    ... ...+++..++.+|++
T Consensus       154 n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~----~~i-~~~~~i~~iavSpng  228 (410)
T PF04841_consen  154 NIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF----KQI-DSDGPIIKIAVSPNG  228 (410)
T ss_pred             CccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc----ccc-cCCCCeEEEEECCCC
Confidence            22211111111 0        000 000 1234445555555555566664442211    111 124678999999988


Q ss_pred             CcEEEEeeCCCeEEEEeCCCCceEEeecCC--CCEEEEEECCCCcE
Q 024372          158 QTILSSCTDSGGVRLWDARSGKIVQTLETK--SPVTSAEVSRDGRY  201 (268)
Q Consensus       158 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~--~~v~~~~~s~~g~~  201 (268)
                      +++. .-.++|.+.+....-.+.+..+...  .....+.|..+...
T Consensus       229 ~~iA-l~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav  273 (410)
T PF04841_consen  229 KFIA-LFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAV  273 (410)
T ss_pred             CEEE-EEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcE
Confidence            7654 4456689999887666666555543  44566777666433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.85  E-value=0.92  Score=42.64  Aligned_cols=27  Identities=19%  Similarity=0.228  Sum_probs=18.5

Q ss_pred             CeeeEEEecCCCCCcEEEEEeCCCCeEEee
Q 024372           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRN   47 (268)
Q Consensus        18 ~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~   47 (268)
                      .|..+..+   ++|.+||..+..+-+.+.-
T Consensus        86 ~v~~i~~n---~~g~~lal~G~~~v~V~~L  112 (717)
T PF10168_consen   86 EVHQISLN---PTGSLLALVGPRGVVVLEL  112 (717)
T ss_pred             eEEEEEEC---CCCCEEEEEcCCcEEEEEe
Confidence            45666666   4888888888876665543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=93.80  E-value=3.5  Score=34.51  Aligned_cols=157  Identities=14%  Similarity=0.174  Sum_probs=81.5

Q ss_pred             eEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCC-CeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEEC
Q 024372           53 WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG-DEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDL  131 (268)
Q Consensus        53 ~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~-~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~  131 (268)
                      +......-.+.+..+..++++.+++.++.-....-|+-... -..+.......|..+.|.|++.+.+.+ ..+.++.=+.
T Consensus       136 W~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~  214 (302)
T PF14870_consen  136 WQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDD  214 (302)
T ss_dssp             EEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-
T ss_pred             eeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccC
Confidence            44444455677888888999999888877767778886432 233333456789999999998776644 7788887662


Q ss_pred             -CCCCC-CCeEecC-Ccc-cEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecC----CCCEEEEEECCCCcEEE
Q 024372          132 -NRPDA-PPREVGN-SSG-SIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET----KSPVTSAEVSRDGRYIT  203 (268)
Q Consensus       132 -~~~~~-~~~~~~~-~~~-~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~----~~~v~~~~~s~~g~~l~  203 (268)
                       ...+. ....... ..+ .+..++|.+++. +.+++.. |.+ +.....|+.-+.-..    ......+.|.++.+-++
T Consensus       215 ~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~-~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~  291 (302)
T PF14870_consen  215 PDDGETWSEPIIPIKTNGYGILDLAYRPPNE-IWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV  291 (302)
T ss_dssp             TTEEEEE---B-TTSS--S-EEEEEESSSS--EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE
T ss_pred             CCCccccccccCCcccCceeeEEEEecCCCC-EEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEE
Confidence             11110 0000111 122 367889987654 4555544 544 445666776554432    34578888877777777


Q ss_pred             EeCCCeEEEE
Q 024372          204 TADGSSVKFW  213 (268)
Q Consensus       204 ~~~~~~v~~w  213 (268)
                      .+.++.+.-|
T Consensus       292 lG~~G~ll~~  301 (302)
T PF14870_consen  292 LGQDGVLLRY  301 (302)
T ss_dssp             E-STTEEEEE
T ss_pred             ECCCcEEEEe
Confidence            7877766543

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=93.80  E-value=1.6  Score=39.44  Aligned_cols=124  Identities=14%  Similarity=0.127  Sum_probs=75.0

Q ss_pred             eeecEEeeecCCCeeeEEEecCC-CCCcEEEEEeCCCCeEEeeCC-----CCCeEEEeeCcc-C--cE--EEEEecCCCc
Q 024372            6 VAVPLVCHGHSRPVVDLFYSPIT-PDGFFLVSASKDSSPMLRNGE-----TGDWIGTFEGHK-G--AV--WSCCLDANAL   74 (268)
Q Consensus         6 ~~~~~~~~~h~~~v~~~~f~~~~-~dg~~l~s~s~d~~i~iw~~~-----~~~~~~~~~~h~-~--~V--~~~~~~~~~~   74 (268)
                      +.-..++ |..+-|.+++|.|.- .+--.|++...-+.|.||.+.     +++++-.-.++- .  +|  ..|-|+|...
T Consensus        47 fGds~vi-GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~  125 (671)
T PF15390_consen   47 FGDSKVI-GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKA  125 (671)
T ss_pred             cCCccEe-eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCc
Confidence            3344444 677889999999963 222256667778888999754     234332211111 1  11  3456899888


Q ss_pred             EEEEe-eCCCcEEEEeCC--CCCeeeeeccCCeEEEEEECCCCCEEEEe-eCCCeEEEEEC
Q 024372           75 FSASG-SADFTAKLWDAL--TGDEKHSFEHKHIVRACAFSEDTHLLLTG-GFEKILRIFDL  131 (268)
Q Consensus        75 ~l~s~-s~D~~v~iw~~~--~~~~~~~~~~~~~v~~v~~~~~~~~l~s~-~~d~~i~~~d~  131 (268)
                      +|+.- ++| .-.+.++.  ....+..+.....|.|.+|.+||+.|+.+ +..-...+||-
T Consensus       126 iL~VLT~~d-vSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~  185 (671)
T PF15390_consen  126 ILTVLTARD-VSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS  185 (671)
T ss_pred             eEEEEecCc-eeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence            77543 333 32334443  33445566677889999999999877664 33445678874

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=93.59  E-value=0.79  Score=40.04  Aligned_cols=78  Identities=15%  Similarity=0.175  Sum_probs=53.3

Q ss_pred             CEEEEEECCCCcEEEEeCC-CeEEEEeCCCceeeeEEeCCCCceee---EEcC---------------CCCCEEEe-ccC
Q 024372          189 PVTSAEVSRDGRYITTADG-SSVKFWDANHFGLVKGYNMPCNTESA---SLEP---------------KLGNIFIA-GGE  248 (268)
Q Consensus       189 ~v~~~~~s~~g~~l~~~~~-~~v~~wd~~~~~~~~~~~~~~~~~~~---~~~~---------------~~~~~~~~-gs~  248 (268)
                      .+.++..+|++++.+..++ |.|.++|+.+...++.+.........   ....               +..-+|+. +-.
T Consensus       309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr  388 (415)
T PF14655_consen  309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR  388 (415)
T ss_pred             eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence            4789999999999887765 89999999887776655543221110   0000               01123443 566


Q ss_pred             CCeEEEEECCCCcEEeec
Q 024372          249 DMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       249 d~~i~~wd~~~g~~~~~~  266 (268)
                      -+.|.+|.+++|..+..+
T Consensus       389 Rg~lEvW~~~~g~Rv~a~  406 (415)
T PF14655_consen  389 RGILEVWSMRQGPRVAAF  406 (415)
T ss_pred             CCeEEEEecCCCCEEEEE
Confidence            889999999999998875

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=93.47  E-value=0.51  Score=26.72  Aligned_cols=32  Identities=25%  Similarity=0.429  Sum_probs=24.6

Q ss_pred             ccEEEEEEeCCCC--cEEEEeeCCCeEEEEeCCC
Q 024372          146 GSIRTVAWLHSDQ--TILSSCTDSGGVRLWDARS  177 (268)
Q Consensus       146 ~~v~~~~~~~~~~--~~~~~~~~d~~i~iwd~~~  177 (268)
                      |.+.++.|+|+..  -+++-.-..+.|.|+|+|+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            4678899997555  4666656668999999995

It contains a characteristic DLL sequence motif.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=93.34  E-value=8  Score=37.24  Aligned_cols=229  Identities=12%  Similarity=0.147  Sum_probs=109.2

Q ss_pred             CCCcEEEEEeCCCCeEEe--eCCCCCeEEEeeCc--cCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeeccCCe
Q 024372           29 PDGFFLVSASKDSSPMLR--NGETGDWIGTFEGH--KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHI  104 (268)
Q Consensus        29 ~dg~~l~s~s~d~~i~iw--~~~~~~~~~~~~~h--~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~  104 (268)
                      .|+.+|.++..||.+..+  |..+|.+-..=+.|  ..|+.--.|+..+..-+-+..|.-..+|-.+..-+...++-+..
T Consensus       593 ~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev  672 (1096)
T KOG1897|consen  593 GDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEV  672 (1096)
T ss_pred             ccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHh
Confidence            468899999999999765  55555432111111  33444445655543323334465555555432222222222222


Q ss_pred             EEEEEECCC--CCEEEEeeCCCeEEEEECCCC-CCCCeEecCCcccEEEEEEeCCCCcEEEEeeC-----------C---
Q 024372          105 VRACAFSED--THLLLTGGFEKILRIFDLNRP-DAPPREVGNSSGSIRTVAWLHSDQTILSSCTD-----------S---  167 (268)
Q Consensus       105 v~~v~~~~~--~~~l~s~~~d~~i~~~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----------d---  167 (268)
                      -..+.|+.+  +..++++. .+.+++.-+..- +.-.+.... ......+++.+.. .++...+.           .   
T Consensus       673 ~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl-~~~prrI~~q~~s-l~~~v~s~r~e~~~~~~~ee~~~  749 (1096)
T KOG1897|consen  673 NHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPL-GESPRRICYQESS-LTFGVLSNRIESSAEYYGEEYEV  749 (1096)
T ss_pred             hhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecC-CCChhheEecccc-eEEEEEecccccchhhcCCcceE
Confidence            223344432  23444443 344566554321 111222221 2233344443311 11221111           1   


Q ss_pred             CeEEEEeCCCCceEEeecCC-----CCEEEEEECCC-CcEEEEeC-----------CCeEEEEeCCCceeee---EEeCC
Q 024372          168 GGVRLWDARSGKIVQTLETK-----SPVTSAEVSRD-GRYITTAD-----------GSSVKFWDANHFGLVK---GYNMP  227 (268)
Q Consensus       168 ~~i~iwd~~~~~~~~~~~~~-----~~v~~~~~s~~-g~~l~~~~-----------~~~v~~wd~~~~~~~~---~~~~~  227 (268)
                      ..++++|-.+.+.++..+..     ..+.++.|..| +.+++.|.           .|.|.++.......++   .....
T Consensus       750 s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~  829 (1096)
T KOG1897|consen  750 SFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVK  829 (1096)
T ss_pred             EEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeec
Confidence            24788888888877654422     23555668777 66655432           2466676654422222   22222


Q ss_pred             CCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEe
Q 024372          228 CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIA  264 (268)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~  264 (268)
                      ..+.++...  .|+++|+-  +..|++|+..+++++.
T Consensus       830 Gav~aL~~f--ngkllA~I--n~~vrLye~t~~~eLr  862 (1096)
T KOG1897|consen  830 GAVYALVEF--NGKLLAGI--NQSVRLYEWTTERELR  862 (1096)
T ss_pred             cceeehhhh--CCeEEEec--CcEEEEEEccccceeh
Confidence            233344333  36655543  4459999987775543

>PHA02790 Kelch-like protein; Provisional

Probab=93.31  E-value=5.9  Score=35.60  Aligned_cols=104  Identities=11%  Similarity=0.063  Sum_probs=50.8

Q ss_pred             CCcEEEEEeCCC-----CeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCC--CcEEEEeCCCCCeeeeeccC
Q 024372           30 DGFFLVSASKDS-----SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD--FTAKLWDALTGDEKHSFEHK  102 (268)
Q Consensus        30 dg~~l~s~s~d~-----~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D--~~v~iw~~~~~~~~~~~~~~  102 (268)
                      ++.+.+.|+.++     ++..||..++++...-.-............++.+.+.||.+  ..+..||..++.=....+-+
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~  350 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLL  350 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCC
Confidence            455667777653     34567888877653221111111111123456666777754  35777876554321111111


Q ss_pred             CeE-EEEEECCCCCEEEEeeCCC---eEEEEECCC
Q 024372          103 HIV-RACAFSEDTHLLLTGGFEK---ILRIFDLNR  133 (268)
Q Consensus       103 ~~v-~~v~~~~~~~~l~s~~~d~---~i~~~d~~~  133 (268)
                      .+. ......-++++.+.|+.++   .+-.||..+
T Consensus       351 ~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~  385 (480)
T PHA02790        351 KPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNH  385 (480)
T ss_pred             CCCcccEEEEECCEEEEecCcCCCCccEEEEeCCC
Confidence            111 1111122577777777553   355777654

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=93.05  E-value=5.4  Score=34.43  Aligned_cols=140  Identities=15%  Similarity=0.206  Sum_probs=70.9

Q ss_pred             EEEEEecCCCcEEEEee-----------CCC-cEEEEeCCCC--C--eeeeec-cCCeEEEEEECCCCCEEEEeeCCCeE
Q 024372           64 VWSCCLDANALFSASGS-----------ADF-TAKLWDALTG--D--EKHSFE-HKHIVRACAFSEDTHLLLTGGFEKIL  126 (268)
Q Consensus        64 V~~~~~~~~~~~l~s~s-----------~D~-~v~iw~~~~~--~--~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i  126 (268)
                      ...++|.+++.++++-.           ..+ .|.+++-..+  +  ....+. .......+.+.+++ +++ +......
T Consensus        16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i~   93 (367)
T TIGR02604        16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPDIL   93 (367)
T ss_pred             CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCeEE
Confidence            34567777777665542           122 5666654322  2  122222 22345678888888 444 4444444


Q ss_pred             EEEECCCCC-C--CCe----EecC----CcccEEEEEEeCCCCcEEEEeeC------------------CCeEEEEeCCC
Q 024372          127 RIFDLNRPD-A--PPR----EVGN----SSGSIRTVAWLHSDQTILSSCTD------------------SGGVRLWDARS  177 (268)
Q Consensus       127 ~~~d~~~~~-~--~~~----~~~~----~~~~v~~~~~~~~~~~~~~~~~~------------------d~~i~iwd~~~  177 (268)
                      ++.|.+... .  ..+    .+..    +......+.+.|++..+++.++.                  .+.|.-+|..+
T Consensus        94 ~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg  173 (367)
T TIGR02604        94 FLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDG  173 (367)
T ss_pred             EEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCC
Confidence            444543211 0  111    1111    12235667888876555544421                  03455556654


Q ss_pred             CceEEeec-CCCCEEEEEECCCCcEEEEeC
Q 024372          178 GKIVQTLE-TKSPVTSAEVSRDGRYITTAD  206 (268)
Q Consensus       178 ~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~  206 (268)
                      ++. ..+. .......++|+|+|+++++..
T Consensus       174 ~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       174 GKL-RVVAHGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             CeE-EEEecCcCCCccceECCCCCEEEEcc
Confidence            442 2232 233467899999999887643

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.03  E-value=1.4  Score=35.02  Aligned_cols=59  Identities=15%  Similarity=0.175  Sum_probs=37.3

Q ss_pred             CCcEEEEEeCCCCeEEeeCCCCCeEEEe-------e-------CccCcEEEEEecCCCcEEEEeeCCCcEEEEe
Q 024372           30 DGFFLVSASKDSSPMLRNGETGDWIGTF-------E-------GHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (268)
Q Consensus        30 dg~~l~s~s~d~~i~iw~~~~~~~~~~~-------~-------~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~   89 (268)
                      .+++|++-+.+|.+.+||+.+++.+..-       .       .....|..+.++.+|.-+++-+ +|..+.|+
T Consensus        21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~   93 (219)
T PF07569_consen   21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYS   93 (219)
T ss_pred             CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEec
Confidence            5779999999999999999998754221       1       1334455555555555444433 24445554

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PHA03098 kelch-like protein; Provisional

Probab=93.00  E-value=6.9  Score=35.57  Aligned_cols=104  Identities=13%  Similarity=0.115  Sum_probs=48.9

Q ss_pred             CCcEEEEEeCCC------CeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCC-----CcEEEEeCCCCCeeee
Q 024372           30 DGFFLVSASKDS------SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD-----FTAKLWDALTGDEKHS   98 (268)
Q Consensus        30 dg~~l~s~s~d~------~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D-----~~v~iw~~~~~~~~~~   98 (268)
                      ++...+.|+.++      .+..||..++++...-.-...........-++.+.+-||.+     ..+..||..++.=...
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~  373 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREE  373 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeC
Confidence            345556665543      35567888777642111111111111112356666777765     3466677665432111


Q ss_pred             --eccCCeEEEEEECCCCCEEEEeeCC------CeEEEEECCCC
Q 024372           99 --FEHKHIVRACAFSEDTHLLLTGGFE------KILRIFDLNRP  134 (268)
Q Consensus        99 --~~~~~~v~~v~~~~~~~~l~s~~~d------~~i~~~d~~~~  134 (268)
                        ...+..-.+++ ..++++.+.|+.+      +.+..||+.+.
T Consensus       374 ~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~  416 (534)
T PHA03098        374 PPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTN  416 (534)
T ss_pred             CCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCC
Confidence              11111111111 2256777777632      34677887643

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=92.99  E-value=2.5  Score=30.53  Aligned_cols=105  Identities=13%  Similarity=0.218  Sum_probs=60.7

Q ss_pred             CCcEEEEeeCCCeEEEEeCCC--------CceEEeecCCCCEEEEEECC-----CCcEEEEeCCCeEEEEeCCCceeeeE
Q 024372          157 DQTILSSCTDSGGVRLWDARS--------GKIVQTLETKSPVTSAEVSR-----DGRYITTADGSSVKFWDANHFGLVKG  223 (268)
Q Consensus       157 ~~~~~~~~~~d~~i~iwd~~~--------~~~~~~~~~~~~v~~~~~s~-----~g~~l~~~~~~~v~~wd~~~~~~~~~  223 (268)
                      .+.+..+ +.-|+|.|.+...        ...+..+.....+.+++-.|     +...|..++...+..||+.+..-+--
T Consensus        10 ~pcL~~a-T~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~d~Fy   88 (136)
T PF14781_consen   10 HPCLACA-TTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNSDLFY   88 (136)
T ss_pred             ceeEEEE-ecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCchhhh
Confidence            3334333 3448899998753        33456677777787776543     23567777778999999976543322


Q ss_pred             EeCCCCceeeEE--cCCCCCEEEeccCCCeEEEEECCCCcEE
Q 024372          224 YNMPCNTESASL--EPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (268)
Q Consensus       224 ~~~~~~~~~~~~--~~~~~~~~~~gs~d~~i~~wd~~~g~~~  263 (268)
                      ...+.+..++.+  ......-++..|.+-.|.-||.. |+++
T Consensus        89 ke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~-G~e~  129 (136)
T PF14781_consen   89 KEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYE-GNEI  129 (136)
T ss_pred             hhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCC-CcEE
Confidence            233333333332  12223445555556668888853 5543

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.82  E-value=3.4  Score=34.08  Aligned_cols=112  Identities=11%  Similarity=0.199  Sum_probs=77.8

Q ss_pred             cccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecC--CCCEEEEEECCCCcEEEEeC-CCeEEEEeCCCceee
Q 024372          145 SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET--KSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLV  221 (268)
Q Consensus       145 ~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~--~~~v~~~~~s~~g~~l~~~~-~~~v~~wd~~~~~~~  221 (268)
                      ...+..+.|+|+...++++... ..-.+|=...|+.+.+++.  -.....+.+..+|+|+++.+ ++.+.++.+.....+
T Consensus        85 ~~nvS~LTynp~~rtLFav~n~-p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~  163 (316)
T COG3204          85 TANVSSLTYNPDTRTLFAVTNK-PAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTV  163 (316)
T ss_pred             cccccceeeCCCcceEEEecCC-CceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccE
Confidence            3448899999999998888655 5555665667999988764  34567889999999988764 678888776544221


Q ss_pred             ---e--EE-----eC-CCCceeeEEcCCCCCEEEeccCCCeEEEEECC
Q 024372          222 ---K--GY-----NM-PCNTESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (268)
Q Consensus       222 ---~--~~-----~~-~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~  258 (268)
                         +  .+     .. +.+..-+++.+. ++.|..+=+-..+.+|.+.
T Consensus       164 ~~~~~~~i~L~~~~k~N~GfEGlA~d~~-~~~l~~aKEr~P~~I~~~~  210 (316)
T COG3204         164 ISAKVQKIPLGTTNKKNKGFEGLAWDPV-DHRLFVAKERNPIGIFEVT  210 (316)
T ss_pred             EeccceEEeccccCCCCcCceeeecCCC-CceEEEEEccCCcEEEEEe
Confidence               1  11     11 445667788874 6667777777777777664

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=92.55  E-value=4.6  Score=32.35  Aligned_cols=210  Identities=14%  Similarity=0.184  Sum_probs=107.5

Q ss_pred             EEEEEeCCCCeEEeeCCCCCe-EEEeeCccCcEEEEEecCCC---cEEEEeeCCCcEEEEeC--CCCCeeeee-c-----
Q 024372           33 FLVSASKDSSPMLRNGETGDW-IGTFEGHKGAVWSCCLDANA---LFSASGSADFTAKLWDA--LTGDEKHSF-E-----  100 (268)
Q Consensus        33 ~l~s~s~d~~i~iw~~~~~~~-~~~~~~h~~~V~~~~~~~~~---~~l~s~s~D~~v~iw~~--~~~~~~~~~-~-----  100 (268)
                      +|..--..+.+.=||..+.+. ..++.+.  ++..+.+.-.+   .+.+.++.--.|-=||-  ......+++ +     
T Consensus        29 Ll~VDi~ag~v~r~D~~qn~v~ra~ie~p--~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~  106 (310)
T KOG4499|consen   29 LLYVDIEAGEVHRYDIEQNKVYRAKIEGP--PSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDR  106 (310)
T ss_pred             EEEEEeccCceehhhhhhhheEEEEEecC--cceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchH
Confidence            444444555554477766542 2344432  13333332212   23344443333444773  223333332 1     


Q ss_pred             cCCeEEEEEECCCCCEEEEeeCC----------CeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeE
Q 024372          101 HKHIVRACAFSEDTHLLLTGGFE----------KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (268)
Q Consensus       101 ~~~~v~~v~~~~~~~~l~s~~~d----------~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i  170 (268)
                      .+...+.-..+|+|++. .|...          +.++.|-+..   ........-+--+.++|..+...+...-+-+-+|
T Consensus       107 kknR~NDgkvdP~Gryy-~GtMad~~~~le~~~g~Ly~~~~~h---~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V  182 (310)
T KOG4499|consen  107 KKNRLNDGKVDPDGRYY-GGTMADFGDDLEPIGGELYSWLAGH---QVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEV  182 (310)
T ss_pred             HhcccccCccCCCCcee-eeeeccccccccccccEEEEeccCC---CceeeehhccCCccccccccCcEEEEEccCceEE
Confidence            22345556678888873 33221          3344443321   1111212223335678876666665555555678


Q ss_pred             EEEe--CCCCce-----EEeecC-----CCCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeCCCCceee-EEc
Q 024372          171 RLWD--ARSGKI-----VQTLET-----KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTESA-SLE  236 (268)
Q Consensus       171 ~iwd--~~~~~~-----~~~~~~-----~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~~~~~~~-~~~  236 (268)
                      .-||  ..+|..     +..+..     +...-.+++..+|++.++. .+++|.-.|..+++++..+..|.....+ +|-
T Consensus       183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg  262 (310)
T KOG4499|consen  183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG  262 (310)
T ss_pred             eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence            7787  555543     222221     1123455666778776554 6789999999999999999998765544 443


Q ss_pred             CC-CCCEEEeccC
Q 024372          237 PK-LGNIFIAGGE  248 (268)
Q Consensus       237 ~~-~~~~~~~gs~  248 (268)
                      .+ .+-+++|+..
T Consensus       263 Gkn~d~~yvT~aa  275 (310)
T KOG4499|consen  263 GKNLDILYVTTAA  275 (310)
T ss_pred             CCCccEEEEEehh
Confidence            22 2345555554

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=92.41  E-value=4.4  Score=31.87  Aligned_cols=132  Identities=17%  Similarity=0.187  Sum_probs=75.9

Q ss_pred             eCCCcEEEEeCCC--CCeeeeeccCCeEEEEEECCCCCEEEEeeC------CCeEEEE-ECCCC---CCCC--eEec---
Q 024372           80 SADFTAKLWDALT--GDEKHSFEHKHIVRACAFSEDTHLLLTGGF------EKILRIF-DLNRP---DAPP--REVG---  142 (268)
Q Consensus        80 s~D~~v~iw~~~~--~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~------d~~i~~~-d~~~~---~~~~--~~~~---  142 (268)
                      ...+.|.+|++.+  .+....++.-+.|..+.++..|.+++|-=.      ...+|+| +.+..   ....  +..+   
T Consensus        35 ~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vRiaG~~v  114 (215)
T PF14761_consen   35 ASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVRIAGHRV  114 (215)
T ss_pred             cCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEEEccccc
Confidence            3456799999883  345667777788999999999999998421      2256666 33211   0000  1111   


Q ss_pred             -----------------CCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCce-E---Eeec-------CCCC--EEE
Q 024372          143 -----------------NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI-V---QTLE-------TKSP--VTS  192 (268)
Q Consensus       143 -----------------~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~-~---~~~~-------~~~~--v~~  192 (268)
                                       ....+..+++=.|-.+.+++++ + +.+.||.+..... .   ..+.       ++..  +..
T Consensus       115 ~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~-~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~~~p~~  192 (215)
T PF14761_consen  115 TPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-G-NKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDNFKPTQ  192 (215)
T ss_pred             ccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-C-CEEEEEEEEEEEEecccccEEechhhhhheecCceEEE
Confidence                             0122445677677778887765 3 7899998764432 1   1111       1111  222


Q ss_pred             EEECCCCcEEEEeCCCeEEEEeC
Q 024372          193 AEVSRDGRYITTADGSSVKFWDA  215 (268)
Q Consensus       193 ~~~s~~g~~l~~~~~~~v~~wd~  215 (268)
                      +++  .+.|++.-++..+++..+
T Consensus       193 v~i--c~~yiA~~s~~ev~Vlkl  213 (215)
T PF14761_consen  193 VAI--CEGYIAVMSDLEVLVLKL  213 (215)
T ss_pred             EEE--EeeEEEEecCCEEEEEEE
Confidence            222  345777777777777654

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=92.31  E-value=4.9  Score=32.16  Aligned_cols=177  Identities=14%  Similarity=0.166  Sum_probs=88.1

Q ss_pred             eeeEEEecCCCCCcEEEEEeCCCCeEE-eeC--CCCCeEEEe---eC--ccCcEEEEEecCCCcEEEEeeCC--------
Q 024372           19 VVDLFYSPITPDGFFLVSASKDSSPML-RNG--ETGDWIGTF---EG--HKGAVWSCCLDANALFSASGSAD--------   82 (268)
Q Consensus        19 v~~~~f~~~~~dg~~l~s~s~d~~i~i-w~~--~~~~~~~~~---~~--h~~~V~~~~~~~~~~~l~s~s~D--------   82 (268)
                      +.++.| |+...-+..+.+...+.+.+ ||.  +..+..+++   ..  .+.+...-..+|+|++.+---.|        
T Consensus        59 ~ag~il-pv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~  137 (310)
T KOG4499|consen   59 SAGFIL-PVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPI  137 (310)
T ss_pred             ceeEEE-EecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchHHhcccccCccCCCCceeeeeecccccccccc
Confidence            334444 44322233444444444443 763  333444442   11  12334444568999885422222        


Q ss_pred             -CcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEE-EeeCCCeEEEEEC--CCCCCCCeE--e--cCC---cccE-EE
Q 024372           83 -FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL-TGGFEKILRIFDL--NRPDAPPRE--V--GNS---SGSI-RT  150 (268)
Q Consensus        83 -~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~-s~~~d~~i~~~d~--~~~~~~~~~--~--~~~---~~~v-~~  150 (268)
                       |.++.|-.. ++....+..-..-+.++|+.+.+.++ .-+.+-+|.-||.  .++....+.  +  ...   .... -.
T Consensus       138 ~g~Ly~~~~~-h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDG  216 (310)
T KOG4499|consen  138 GGELYSWLAG-HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDG  216 (310)
T ss_pred             ccEEEEeccC-CCceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCc
Confidence             344444432 11111111112234677887776665 4456677777873  333221110  0  000   0000 01


Q ss_pred             EEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecC-CCCEEEEEECCC
Q 024372          151 VAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRD  198 (268)
Q Consensus       151 ~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~s~~  198 (268)
                      ++.. ..+++.+++...++|...|+.+|+.+.++.. ...+.+++|-.-
T Consensus       217 m~ID-~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk  264 (310)
T KOG4499|consen  217 MTID-TEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK  264 (310)
T ss_pred             ceEc-cCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence            1222 2456777777778999999999999998864 455888888643

>PRK10115 protease 2; Provisional

Probab=92.24  E-value=10  Score=35.75  Aligned_cols=228  Identities=14%  Similarity=0.102  Sum_probs=106.2

Q ss_pred             CCCCcEEEEEeCC-----CCeEEeeCCCCCeEE-EeeCccCcEEEEEecCCCcEEE-EeeCC-----CcEEEEeCCCCC-
Q 024372           28 TPDGFFLVSASKD-----SSPMLRNGETGDWIG-TFEGHKGAVWSCCLDANALFSA-SGSAD-----FTAKLWDALTGD-   94 (268)
Q Consensus        28 ~~dg~~l~s~s~d-----~~i~iw~~~~~~~~~-~~~~h~~~V~~~~~~~~~~~l~-s~s~D-----~~v~iw~~~~~~-   94 (268)
                      +|||++|+-+...     .++++.|+.+|+.+. .+.+   .-..++|.+|++.|+ +.-.+     ..|+.+++.++. 
T Consensus       135 Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~---~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~  211 (686)
T PRK10115        135 TPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN---VEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPAS  211 (686)
T ss_pred             CCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC---cceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChh
Confidence            5799888766322     245677888886432 2221   114588998886554 33222     467778888873 


Q ss_pred             -eeeeeccC-CeEE-EEEECCCCCEEEEee---CCCeEEEEECCCCCCCC-eEecCCcccEEEEEEeCCCCcEEEEeeCC
Q 024372           95 -EKHSFEHK-HIVR-ACAFSEDTHLLLTGG---FEKILRIFDLNRPDAPP-REVGNSSGSIRTVAWLHSDQTILSSCTDS  167 (268)
Q Consensus        95 -~~~~~~~~-~~v~-~v~~~~~~~~l~s~~---~d~~i~~~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~d  167 (268)
                       -...+... .... .+..+.+++.++..+   .++.+.+++........ .......+....+. ...+..++.+..+.
T Consensus       212 ~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~~tn~~~  290 (686)
T PRK10115        212 QDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFYLRSNRHG  290 (686)
T ss_pred             HCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEEEEEcCCC
Confidence             23333321 2222 333454776555432   34568888853221111 12222222223322 22233334332211


Q ss_pred             C--eEEEEeCC-CCceEEeecC--CCCEEEEEECCCCcEEEE-eCCC--eEEEEeCCCceeeeEEeCCCCcee--eEEc-
Q 024372          168 G--GVRLWDAR-SGKIVQTLET--KSPVTSAEVSRDGRYITT-ADGS--SVKFWDANHFGLVKGYNMPCNTES--ASLE-  236 (268)
Q Consensus       168 ~--~i~iwd~~-~~~~~~~~~~--~~~v~~~~~s~~g~~l~~-~~~~--~v~~wd~~~~~~~~~~~~~~~~~~--~~~~-  236 (268)
                      .  .|...++. .++-...+..  ...+..+.++.+ .+++. -.++  .+.++|.... .+..+..+.....  .... 
T Consensus       291 ~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~-~l~~~~~~~g~~~l~~~~~~~~-~~~~l~~~~~~~~~~~~~~~  368 (686)
T PRK10115        291 KNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTD-WLVVEERQRGLTSLRQINRKTR-EVIGIAFDDPAYVTWIAYNP  368 (686)
T ss_pred             CCceEEEecCCCcccCeEEECCCCCCEEEEEEEECC-EEEEEEEeCCEEEEEEEcCCCC-ceEEecCCCCceEeeecccC
Confidence            2  34334554 2222222333  234777777744 33333 3344  4556665432 2333332211111  1122 


Q ss_pred             -CCCCCEEEeccC---CCeEEEEECCCCc
Q 024372          237 -PKLGNIFIAGGE---DMWVHVFDFHTGE  261 (268)
Q Consensus       237 -~~~~~~~~~gs~---d~~i~~wd~~~g~  261 (268)
                       +..+.++++.+.   -..++.||..+++
T Consensus       369 ~~~~~~~~~~~ss~~~P~~~y~~d~~~~~  397 (686)
T PRK10115        369 EPETSRLRYGYSSMTTPDTLFELDMDTGE  397 (686)
T ss_pred             CCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence             223455555433   3578889988765

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=92.19  E-value=0.17  Score=47.48  Aligned_cols=73  Identities=15%  Similarity=0.128  Sum_probs=53.3

Q ss_pred             CeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEE-----------ecCCCcEEEEeeCCCcEE
Q 024372           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC-----------LDANALFSASGSADFTAK   86 (268)
Q Consensus        18 ~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~-----------~~~~~~~l~s~s~D~~v~   86 (268)
                      ++.-+.|.|+.+..-++-.+-.++++++........ .-+++|...+..++           .+|||..+|+++.||.++
T Consensus       182 ~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~  260 (1283)
T KOG1916|consen  182 DPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVG  260 (1283)
T ss_pred             CcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccc
Confidence            446677888777778888888999998865544322 33456765554432           689999999999999999


Q ss_pred             EEeCC
Q 024372           87 LWDAL   91 (268)
Q Consensus        87 iw~~~   91 (268)
                      +|.+.
T Consensus       261 f~Qiy  265 (1283)
T KOG1916|consen  261 FYQIY  265 (1283)
T ss_pred             eeeee
Confidence            99874

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=92.08  E-value=0.7  Score=30.95  Aligned_cols=41  Identities=15%  Similarity=0.219  Sum_probs=30.3

Q ss_pred             CCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEeC
Q 024372          166 DSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTAD  206 (268)
Q Consensus       166 ~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  206 (268)
                      .+|.+.-||.++++..-.+..-...+.++++||+.+++.++
T Consensus        35 ~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~E   75 (89)
T PF03088_consen   35 PTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAE   75 (89)
T ss_dssp             --EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEE
T ss_pred             CCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEe
Confidence            34889999999988655555445689999999999877654

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=91.88  E-value=1.1  Score=40.93  Aligned_cols=38  Identities=21%  Similarity=0.284  Sum_probs=28.0

Q ss_pred             CcEEEEEecC----CCcEEEEeeCCCcEEEEeCCCCCeeeee
Q 024372           62 GAVWSCCLDA----NALFSASGSADFTAKLWDALTGDEKHSF   99 (268)
Q Consensus        62 ~~V~~~~~~~----~~~~l~s~s~D~~v~iw~~~~~~~~~~~   99 (268)
                      +.+..+++..    +..++++.+.|+++|+||+.++.++.+.
T Consensus       215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred             CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence            3455566665    6788999999999999999999985543

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=91.86  E-value=6.7  Score=32.70  Aligned_cols=200  Identities=13%  Similarity=0.096  Sum_probs=109.6

Q ss_pred             EEEEecCCCcEEEEeeCCCcEEEEeCCC------C-Ceeeeec------cCCeEEEEEECCCC------------CEEEE
Q 024372           65 WSCCLDANALFSASGSADFTAKLWDALT------G-DEKHSFE------HKHIVRACAFSEDT------------HLLLT  119 (268)
Q Consensus        65 ~~~~~~~~~~~l~s~s~D~~v~iw~~~~------~-~~~~~~~------~~~~v~~v~~~~~~------------~~l~s  119 (268)
                      +.++++|.+.+.++....++..+||...      . ..+-++.      .+...+.+.|+...            ..++.
T Consensus        26 WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif  105 (336)
T TIGR03118        26 WGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLF  105 (336)
T ss_pred             ceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEE
Confidence            6788999998888888889999999861      1 1222322      12234555565422            23567


Q ss_pred             eeCCCeEEEEECCCCCC----CCeEecC-CcccEE-EEEEe--CCCCcEEEEeeCCCeEEEEeCCCCceE--EeecC---
Q 024372          120 GGFEKILRIFDLNRPDA----PPREVGN-SSGSIR-TVAWL--HSDQTILSSCTDSGGVRLWDARSGKIV--QTLET---  186 (268)
Q Consensus       120 ~~~d~~i~~~d~~~~~~----~~~~~~~-~~~~v~-~~~~~--~~~~~~~~~~~~d~~i~iwd~~~~~~~--~~~~~---  186 (268)
                      ++.||+|.-|.......    ....... ..+.+. .+++-  ..+..+.++-...++|.++|-.=.+..  ..+..   
T Consensus       106 ~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~i  185 (336)
T TIGR03118       106 VTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPAL  185 (336)
T ss_pred             EeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCC
Confidence            78899999997532221    1112221 224443 34433  334567777777789999985422111  00100   


Q ss_pred             --C-CC-----------EEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCC---CceeeEE-----cCCCCCEE
Q 024372          187 --K-SP-----------VTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPC---NTESASL-----EPKLGNIF  243 (268)
Q Consensus       187 --~-~~-----------v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~---~~~~~~~-----~~~~~~~~  243 (268)
                        . .+           |.-..-.++++.=.. ..-+.|-+||+. +..++.+....   .++-++.     -.-++++|
T Consensus       186 PagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lL  264 (336)
T TIGR03118       186 PAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGALL  264 (336)
T ss_pred             CCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCCeE
Confidence              0 01           111222233322112 223578899985 34566564321   1222322     22257888


Q ss_pred             EeccCCCeEEEEECCCCcEEee
Q 024372          244 IAGGEDMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       244 ~~gs~d~~i~~wd~~~g~~~~~  265 (268)
                      +---.|+.|-.||..+|+.+..
T Consensus       265 VGNFGDG~InaFD~~sG~~~g~  286 (336)
T TIGR03118       265 VGNFGDGTINAYDPQSGAQLGQ  286 (336)
T ss_pred             EeecCCceeEEecCCCCceeee
Confidence            8767799999999988886654

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=91.82  E-value=5.2  Score=31.42  Aligned_cols=177  Identities=16%  Similarity=0.131  Sum_probs=93.7

Q ss_pred             eEEEecCCCCCcEEEEEeCCC--CeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEE-EEeeCCCcEEEEeCCCCCeee
Q 024372           21 DLFYSPITPDGFFLVSASKDS--SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFS-ASGSADFTAKLWDALTGDEKH   97 (268)
Q Consensus        21 ~~~f~~~~~dg~~l~s~s~d~--~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l-~s~s~D~~v~iw~~~~~~~~~   97 (268)
                      ++.+.    +|.++.+.+.-|  .|++||+.+|+.+..-.--...++.=-...-+..+ +---.|+....+|..+-++..
T Consensus        50 GL~~~----~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg  125 (262)
T COG3823          50 GLEYL----DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELG  125 (262)
T ss_pred             ceeee----CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhc
Confidence            66664    678888887766  56779999887553322111122111111112222 223457777888887777766


Q ss_pred             eeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCe----EecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEE
Q 024372           98 SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR----EVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLW  173 (268)
Q Consensus        98 ~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iw  173 (268)
                      .++-+..=..++  .+++.|+.+....+++.-|..+-.....    ..+..-..++.+.|..  +.+.+--.....|-.-
T Consensus       126 ~~~y~GeGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~Vd--G~lyANVw~t~~I~rI  201 (262)
T COG3823         126 RFSYEGEGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVD--GELYANVWQTTRIARI  201 (262)
T ss_pred             ccccCCcceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeec--cEEEEeeeeecceEEE
Confidence            665544444443  3455566666666777666543221111    1111122233444432  2333333333455555


Q ss_pred             eCCCCceEEeecCC-------------CCEEEEEECCCC-cEEEEe
Q 024372          174 DARSGKIVQTLETK-------------SPVTSAEVSRDG-RYITTA  205 (268)
Q Consensus       174 d~~~~~~~~~~~~~-------------~~v~~~~~s~~g-~~l~~~  205 (268)
                      |..+|+.+..++..             ...+.+++.|++ ++++++
T Consensus       202 ~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         202 DPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             cCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            88888887765431             235778888887 555554

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=91.66  E-value=6.2  Score=31.91  Aligned_cols=138  Identities=19%  Similarity=0.196  Sum_probs=77.4

Q ss_pred             EEEeCCCCCeeeee-ccCCeEEEEEECCCCCEEEEeeCC---CeEEEEECCC--CCCCCeEec---CCcccEEEEEEeCC
Q 024372           86 KLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFE---KILRIFDLNR--PDAPPREVG---NSSGSIRTVAWLHS  156 (268)
Q Consensus        86 ~iw~~~~~~~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d---~~i~~~d~~~--~~~~~~~~~---~~~~~v~~~~~~~~  156 (268)
                      -+||+.++...... ...-.+..-.+-+||+++.+|+..   +.+++++.-.  +.....+..   ...-+-.+....++
T Consensus        49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~D  128 (243)
T PF07250_consen   49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPD  128 (243)
T ss_pred             EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCC
Confidence            47888876653321 122234444577899999998742   4478887532  011111111   11223445556788


Q ss_pred             CCcEEEEeeCCCeEEEEeCCCC--ceEE--eecC------CCCEEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEE
Q 024372          157 DQTILSSCTDSGGVRLWDARSG--KIVQ--TLET------KSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGY  224 (268)
Q Consensus       157 ~~~~~~~~~~d~~i~iwd~~~~--~~~~--~~~~------~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~  224 (268)
                      +..++++|...-+..+|..+..  ....  .+..      ..--.-+.+.|+|++++.+.. .-.|||....+.++.+
T Consensus       129 G~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~-~s~i~d~~~n~v~~~l  205 (243)
T PF07250_consen  129 GRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR-GSIIYDYKTNTVVRTL  205 (243)
T ss_pred             CCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC-CcEEEeCCCCeEEeeC
Confidence            8877777776556777765321  1111  1111      111235778899999887765 3556688777665555

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=90.45  E-value=8.4  Score=31.33  Aligned_cols=141  Identities=14%  Similarity=0.047  Sum_probs=81.8

Q ss_pred             cEEEEEecCCCcEEEEee---CCCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEE-CCCCCCCC
Q 024372           63 AVWSCCLDANALFSASGS---ADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFD-LNRPDAPP  138 (268)
Q Consensus        63 ~V~~~~~~~~~~~l~s~s---~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d-~~~~~~~~  138 (268)
                      .+.+.++++++..+|...   ....++++...  ...........+..-+|++++.+.+....+...+++- ...+....
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~  102 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP  102 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--CcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence            677888999998766544   33445555543  3222222333556667899987777666666666663 22332222


Q ss_pred             eEecCC--cccEEEEEEeCCCCcEEEEee--CCCeEEEEeCC---CC--c----eEEee-cCCCCEEEEEECCCCcEEEE
Q 024372          139 REVGNS--SGSIRTVAWLHSDQTILSSCT--DSGGVRLWDAR---SG--K----IVQTL-ETKSPVTSAEVSRDGRYITT  204 (268)
Q Consensus       139 ~~~~~~--~~~v~~~~~~~~~~~~~~~~~--~d~~i~iwd~~---~~--~----~~~~~-~~~~~v~~~~~s~~g~~l~~  204 (268)
                      ......  .+.|..+.++|++..+++...  +++.|.+=-+.   .+  .    .+... .....+..+.|.+++.+++.
T Consensus       103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~  182 (253)
T PF10647_consen  103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVL  182 (253)
T ss_pred             EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEE
Confidence            222221  127999999999987655542  23566665442   22  1    11111 11346889999999998765


Q ss_pred             e
Q 024372          205 A  205 (268)
Q Consensus       205 ~  205 (268)
                      .
T Consensus       183 ~  183 (253)
T PF10647_consen  183 G  183 (253)
T ss_pred             e
Confidence            4

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=90.43  E-value=7.9  Score=34.63  Aligned_cols=141  Identities=14%  Similarity=0.131  Sum_probs=83.5

Q ss_pred             CCCcE-EEEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEEECCCC--------CEEEEeeCCCeEEEEECCCCCCCCeEe
Q 024372           71 ANALF-SASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDT--------HLLLTGGFEKILRIFDLNRPDAPPREV  141 (268)
Q Consensus        71 ~~~~~-l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~--------~~l~s~~~d~~i~~~d~~~~~~~~~~~  141 (268)
                      .++.+ +..|+.-..++--|++.++.+..+.....+ .|.|.|..        +.|+ |-.+..|.--|.+.....+...
T Consensus       477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v~  554 (776)
T COG5167         477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKVV  554 (776)
T ss_pred             CCcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEE-eecccceEEecccccCCceeee
Confidence            34444 456777778888899999999988866666 67777743        4444 4444445445765433221111


Q ss_pred             cCCcccE-----EEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecC-CCCEEEEEECCCCcEEEEeCCCeEEEEeC
Q 024372          142 GNSSGSI-----RTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTADGSSVKFWDA  215 (268)
Q Consensus       142 ~~~~~~v-----~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~~~~~~v~~wd~  215 (268)
                       ......     .+..- -..++++ .++..|-||+||-=.-+....++. ...+..+..+.+|+++.+.=...+.+-|+
T Consensus       555 -esKdY~tKn~Fss~~t-TesGyIa-~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~  631 (776)
T COG5167         555 -ESKDYKTKNKFSSGMT-TESGYIA-AASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDV  631 (776)
T ss_pred             -eehhcccccccccccc-ccCceEE-EecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEec
Confidence             111122     22221 2334444 445669999999432222223333 34588899999999987765568888887


Q ss_pred             C
Q 024372          216 N  216 (268)
Q Consensus       216 ~  216 (268)
                      +
T Consensus       632 ~  632 (776)
T COG5167         632 P  632 (776)
T ss_pred             c
Confidence            3

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=90.04  E-value=10  Score=31.73  Aligned_cols=231  Identities=13%  Similarity=0.002  Sum_probs=109.3

Q ss_pred             cCCCCCcEEEEEeCCCCeEEeeCCC--CCeEEEeeCccCcEEEEEecCCCcEEEEee-CCCcEEEEeCCCCCe-------
Q 024372           26 PITPDGFFLVSASKDSSPMLRNGET--GDWIGTFEGHKGAVWSCCLDANALFSASGS-ADFTAKLWDALTGDE-------   95 (268)
Q Consensus        26 ~~~~dg~~l~s~s~d~~i~iw~~~~--~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s-~D~~v~iw~~~~~~~-------   95 (268)
                      |..-++++|+.|+.+|--.+. ...  ++..+-+  +..+|..+.+.+....|++-+ ....++++++..-..       
T Consensus         8 ~~~~~~~~lL~GTe~Gly~~~-~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~   84 (302)
T smart00036        8 PITCDGKWLLVGTEEGLYVLN-ISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGS   84 (302)
T ss_pred             ccccCCcEEEEEeCCceEEEE-cccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCC
Confidence            444444689999999987665 333  4444443  456898998887766665543 444599999833221       


Q ss_pred             ---------eeeeccCCeEE--EEEECCCCCEEEEeeCCCeEEEEECCCCCCC---CeE----ecCCcccEEEEEEeCC-
Q 024372           96 ---------KHSFEHKHIVR--ACAFSEDTHLLLTGGFEKILRIFDLNRPDAP---PRE----VGNSSGSIRTVAWLHS-  156 (268)
Q Consensus        96 ---------~~~~~~~~~v~--~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~---~~~----~~~~~~~v~~~~~~~~-  156 (268)
                               ...+.+.....  ++.-.+. ..++.+.....|.++....+...   ...    ......++..+..++. 
T Consensus        85 ~~~~~~~~~~~~~~~tkGc~~~~v~~~~~-~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~  163 (302)
T smart00036       85 ARLVIRKNVLTKIPDTKGCHLCAVVNGKR-SLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSF  163 (302)
T ss_pred             ccccccccceEeCCcCCceEEEEEEcCCC-cEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccc
Confidence                     11222322122  2222222 23444555667777654332111   111    0011112222222222 


Q ss_pred             -CCcEEEEeeCCCeEEEEeCCC--Cce----EEe-ecCCC-CEEEEEECCCCcEEEEeCCCeEEEEeCCCcee--eeEEe
Q 024372          157 -DQTILSSCTDSGGVRLWDARS--GKI----VQT-LETKS-PVTSAEVSRDGRYITTADGSSVKFWDANHFGL--VKGYN  225 (268)
Q Consensus       157 -~~~~~~~~~~d~~i~iwd~~~--~~~----~~~-~~~~~-~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~--~~~~~  225 (268)
                       ...+++++.. +...+.++..  ...    +.. ..... ...++..-+++.++.+=++ ...+-|....+.  ...+.
T Consensus       164 ~~~~lcvG~~~-~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~~~e~Llc~~~-~~v~Vn~~G~~~~r~~~l~  241 (302)
T smart00036      164 ERPGICIGSDK-GGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVPRDEFLLCYDE-FGVFVNLYGKRRSRNPILH  241 (302)
T ss_pred             cceEEEEEEcC-CCCeEEEEeecccccccccccccccccccCceEEEEECCCeEEEEECc-EEEEEeCCCCccccceEEE
Confidence             2345555443 2333444422  110    000 00111 3344444555666666554 333444432111  12233


Q ss_pred             CCCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEeec
Q 024372          226 MPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~~  266 (268)
                      ....+.+++...   .++++-.. ..|.++++.+|+.+.+.
T Consensus       242 w~~~p~~~~~~~---pyll~~~~-~~ievr~l~~~~l~q~i  278 (302)
T smart00036      242 WEFMPESFAYHS---PYLLAFHD-NGIEIRSIKTGELLQEL  278 (302)
T ss_pred             cCCcccEEEEEC---CEEEEEcC-CcEEEEECCCCceEEEE
Confidence            334445555543   34555544 44999999999987764

Unpublished observations.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=89.50  E-value=2.3  Score=24.08  Aligned_cols=31  Identities=19%  Similarity=0.212  Sum_probs=25.3

Q ss_pred             CcEEEEEecCCC---cEEEEeeCCCcEEEEeCCC
Q 024372           62 GAVWSCCLDANA---LFSASGSADFTAKLWDALT   92 (268)
Q Consensus        62 ~~V~~~~~~~~~---~~l~s~s~D~~v~iw~~~~   92 (268)
                      +.|+++.|+|..   ++|+-.-.-+.|-++|+.+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            468999999754   4888887888999999975

It contains a characteristic DLL sequence motif.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=89.26  E-value=21  Score=34.17  Aligned_cols=67  Identities=16%  Similarity=0.230  Sum_probs=42.5

Q ss_pred             cEEEEeeCCCeEEEEeCCCCceEEeecCCCCEE-------------EEEECC---CCcEEEEeC----------CCeEEE
Q 024372          159 TILSSCTDSGGVRLWDARSGKIVQTLETKSPVT-------------SAEVSR---DGRYITTAD----------GSSVKF  212 (268)
Q Consensus       159 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~-------------~~~~s~---~g~~l~~~~----------~~~v~~  212 (268)
                      .++ .++.|+.|.-.|.++|+.+..+.....+.             .+.-+|   ++..++++.          ++.|+-
T Consensus       262 rV~-~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A  340 (764)
T TIGR03074       262 RII-LPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA  340 (764)
T ss_pred             EEE-EecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence            344 44567999999999999887665432221             111122   445555432          467999


Q ss_pred             EeCCCceeeeEEeC
Q 024372          213 WDANHFGLVKGYNM  226 (268)
Q Consensus       213 wd~~~~~~~~~~~~  226 (268)
                      +|.++++++-.+..
T Consensus       341 ~Da~TGkl~W~~~~  354 (764)
T TIGR03074       341 FDVNTGALVWAWDP  354 (764)
T ss_pred             EECCCCcEeeEEec
Confidence            99999988876653

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=88.94  E-value=9  Score=35.95  Aligned_cols=104  Identities=13%  Similarity=0.043  Sum_probs=66.3

Q ss_pred             CCcEEEEeeCCCcEEEEeCCC-------C----C---------eeeeeccCCeEEEEEEC--CCCCEEEEeeCCCeEEEE
Q 024372           72 NALFSASGSADFTAKLWDALT-------G----D---------EKHSFEHKHIVRACAFS--EDTHLLLTGGFEKILRIF  129 (268)
Q Consensus        72 ~~~~l~s~s~D~~v~iw~~~~-------~----~---------~~~~~~~~~~v~~v~~~--~~~~~l~s~~~d~~i~~~  129 (268)
                      +...|+.+..||.|.+|.+++       .    .         +...+..+..+..++++  ...+++|.++....|.+|
T Consensus       113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF  192 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF  192 (717)
T ss_pred             CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence            346788899999999997621       1    0         11222345567888888  788899999999999988


Q ss_pred             ECCCC--CCCCeEecCCcccEEEEEEeCCC----Cc-EEEEeeCCCeEEEEeC
Q 024372          130 DLNRP--DAPPREVGNSSGSIRTVAWLHSD----QT-ILSSCTDSGGVRLWDA  175 (268)
Q Consensus       130 d~~~~--~~~~~~~~~~~~~v~~~~~~~~~----~~-~~~~~~~d~~i~iwd~  175 (268)
                      -....  +........+..-|.+|+|.+..    ++ .+++++=.|.+.+|++
T Consensus       193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            65431  11111111233457888887654    22 4555555688888776

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=88.94  E-value=8.8  Score=30.21  Aligned_cols=143  Identities=15%  Similarity=0.174  Sum_probs=72.5

Q ss_pred             CCEEEEeeCC--CeEEEEECCCCCCCCeEecCC----cccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCC
Q 024372          114 THLLLTGGFE--KILRIFDLNRPDAPPREVGNS----SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK  187 (268)
Q Consensus       114 ~~~l~s~~~d--~~i~~~d~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~  187 (268)
                      +.++.+.+.-  ..|+.||+++++.........    ...++.+    .+.....+ -.+|.-..+|.++.+++..+...
T Consensus        56 g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~----gd~~y~LT-w~egvaf~~d~~t~~~lg~~~y~  130 (262)
T COG3823          56 GHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL----GDYFYQLT-WKEGVAFKYDADTLEELGRFSYE  130 (262)
T ss_pred             CEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeec----cceEEEEE-eccceeEEEChHHhhhhcccccC
Confidence            4555555432  458889987654322211110    0111111    11222333 45688889999999998887655


Q ss_pred             CCEEEEEECCCCcEEEEeC-CCeEEEEeCCCceeeeEEeCCCC------ceeeEEcCCCCCEEEeccCCCeEEEEECCCC
Q 024372          188 SPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCN------TESASLEPKLGNIFIAGGEDMWVHVFDFHTG  260 (268)
Q Consensus       188 ~~v~~~~~s~~g~~l~~~~-~~~v~~wd~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g  260 (268)
                      +.--.  +..|++-++.++ ..++++=|.+++....+....-.      ...+-+.  +|..++-.=.+..|-..|..+|
T Consensus       131 GeGWg--Lt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V--dG~lyANVw~t~~I~rI~p~sG  206 (262)
T COG3823         131 GEGWG--LTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV--DGELYANVWQTTRIARIDPDSG  206 (262)
T ss_pred             Cccee--eecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee--ccEEEEeeeeecceEEEcCCCC
Confidence            44322  345555555544 45777777777665554432111      1111111  3555544433334555566666


Q ss_pred             cEEee
Q 024372          261 EQIAI  265 (268)
Q Consensus       261 ~~~~~  265 (268)
                      +.++.
T Consensus       207 rV~~w  211 (262)
T COG3823         207 RVVAW  211 (262)
T ss_pred             cEEEE
Confidence            66543

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=88.47  E-value=8  Score=31.28  Aligned_cols=112  Identities=17%  Similarity=0.318  Sum_probs=61.1

Q ss_pred             EEeCCCCcEEEEeeCC--CeEEEEeCCC----CceEE---eecCCCCEEEEEECCCCcEEEEe-C-CCeEEEEeCCCc--
Q 024372          152 AWLHSDQTILSSCTDS--GGVRLWDARS----GKIVQ---TLETKSPVTSAEVSRDGRYITTA-D-GSSVKFWDANHF--  218 (268)
Q Consensus       152 ~~~~~~~~~~~~~~~d--~~i~iwd~~~----~~~~~---~~~~~~~v~~~~~s~~g~~l~~~-~-~~~v~~wd~~~~--  218 (268)
                      .+.+++..+.++|..+  +.+|+++...    ..-..   .+.....-.++..-|||+.++.| . .....+|+-+..  
T Consensus        73 ~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~  152 (243)
T PF07250_consen   73 AFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGP  152 (243)
T ss_pred             CCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCCCcccccCCccCCC
Confidence            3456665444444333  3588888754    11111   12222334566778999987755 3 345677775321  


Q ss_pred             eeeeE-E------eCCCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEee
Q 024372          219 GLVKG-Y------NMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       219 ~~~~~-~------~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~  265 (268)
                      ..... +      ..+.+.....+..++|++|+.+..+..  +||.++++.+..
T Consensus       153 ~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~--i~d~~~n~v~~~  204 (243)
T PF07250_consen  153 GPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSI--IYDYKTNTVVRT  204 (243)
T ss_pred             CceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcE--EEeCCCCeEEee
Confidence            11111 1      112233444555558999999988754  568877766544

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=88.40  E-value=16  Score=31.67  Aligned_cols=227  Identities=15%  Similarity=0.113  Sum_probs=100.8

Q ss_pred             CCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEe--cCCCcEEEEee---CC-------------------CcE
Q 024372           30 DGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCL--DANALFSASGS---AD-------------------FTA   85 (268)
Q Consensus        30 dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~--~~~~~~l~s~s---~D-------------------~~v   85 (268)
                      +.+.++=....++++-.|+.+.+...-+.-.++.+-...+  ..++..++-.-   .|                   ..|
T Consensus        91 ~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i  170 (386)
T PF14583_consen   91 DDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRI  170 (386)
T ss_dssp             TSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEE
T ss_pred             CCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceE
Confidence            3344443444556666677777643333334444433333  33444443221   11                   112


Q ss_pred             EEEeCCCCCeeeeeccCCeEEEEEECCC-CCEEEEe---eCCCe-EEEEECCCCCCCCeEecC--CcccEEEEEEeCCCC
Q 024372           86 KLWDALTGDEKHSFEHKHIVRACAFSED-THLLLTG---GFEKI-LRIFDLNRPDAPPREVGN--SSGSIRTVAWLHSDQ  158 (268)
Q Consensus        86 ~iw~~~~~~~~~~~~~~~~v~~v~~~~~-~~~l~s~---~~d~~-i~~~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~~  158 (268)
                      .--|+.+++....+....-+..+.|+|. ..+++-|   -++.. -|||-++...........  ....+..=-|.+++.
T Consensus       171 ~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~  250 (386)
T PF14583_consen  171 FTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGS  250 (386)
T ss_dssp             EEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS
T ss_pred             EEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCC
Confidence            2235556665555556667888999994 4444443   35553 478866543222222211  112233334567776


Q ss_pred             cEEEEee-C---CCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEE-eCCC----------------eEEEEeCCC
Q 024372          159 TILSSCT-D---SGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-ADGS----------------SVKFWDANH  217 (268)
Q Consensus       159 ~~~~~~~-~---d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~~----------------~v~~wd~~~  217 (268)
                      .+..-+. .   +..|.-.|+.+++....... ....-...++||+++++ +.|.                .|++++++.
T Consensus       251 ~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~-p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~  329 (386)
T PF14583_consen  251 TIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM-PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEA  329 (386)
T ss_dssp             -EEEEEEETTT--EEEEEE-TTT--EEEEEEE--SEEEEEE-TTSSEEEEEE-------------------EEEEEETTT
T ss_pred             EEEEEeecCCCCceEEEeeCCCCCCceEEEeC-CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEecccc
Confidence            6543221 2   23566678888765443333 24556677899999875 2221                466788876


Q ss_pred             ceeeeEEeCC-----------CCceeeEEcCCCCCEEE-eccCCCeEEEEECC
Q 024372          218 FGLVKGYNMP-----------CNTESASLEPKLGNIFI-AGGEDMWVHVFDFH  258 (268)
Q Consensus       218 ~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~-~gs~d~~i~~wd~~  258 (268)
                      ........+.           ....-..|+| +|++++ ++...|...||=++
T Consensus       330 ~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSP-Dgk~VlF~Sd~~G~~~vY~v~  381 (386)
T PF14583_consen  330 GRFRKLARHDTSWKVLDGDRQVTHPHPSFSP-DGKWVLFRSDMEGPPAVYLVE  381 (386)
T ss_dssp             TEEEEEEE-------BTTBSSTT----EE-T-TSSEEEEEE-TTSS-EEEEEE
T ss_pred             CceeeeeeccCcceeecCCCccCCCCCccCC-CCCEEEEECCCCCCccEEEEe
Confidence            5433222111           1122356777 577666 45557776666543

>smart00564 PQQ beta-propeller repeat

Probab=88.23  E-value=1.2  Score=23.14  Aligned_cols=26  Identities=23%  Similarity=0.234  Sum_probs=21.5

Q ss_pred             CCEEEeccCCCeEEEEECCCCcEEee
Q 024372          240 GNIFIAGGEDMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       240 ~~~~~~gs~d~~i~~wd~~~g~~~~~  265 (268)
                      +..+++++.++.++.+|.++|+++-.
T Consensus         6 ~~~v~~~~~~g~l~a~d~~~G~~~W~   31 (33)
T smart00564        6 DGTVYVGSTDGTLYALDAKTGEILWT   31 (33)
T ss_pred             CCEEEEEcCCCEEEEEEcccCcEEEE
Confidence            34678888999999999999998643

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=87.71  E-value=17  Score=31.27  Aligned_cols=106  Identities=20%  Similarity=0.176  Sum_probs=61.1

Q ss_pred             CCcEEEEeeCCCeEEEEeCCCCceEEeecCCC--CEEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEeCCCC-ceee
Q 024372          157 DQTILSSCTDSGGVRLWDARSGKIVQTLETKS--PVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCN-TESA  233 (268)
Q Consensus       157 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~--~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~~~~-~~~~  233 (268)
                      ++.++++ +.++.+...|.++|+.+.......  .+....+-.++..+..++++.+...|..++...-.+..... ....
T Consensus       111 ~G~i~~g-~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~  189 (370)
T COG1520         111 DGKIYVG-SWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSI  189 (370)
T ss_pred             CCeEEEe-cccceEEEEECCCCcEEEEEecCCCeEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCcccccc
Confidence            3445544 455788889999999888776555  23344445566665555667777777777666555444321 0000


Q ss_pred             --EEcCCCCCEEEeccC--CCeEEEEECCCCcEEe
Q 024372          234 --SLEPKLGNIFIAGGE--DMWVHVFDFHTGEQIA  264 (268)
Q Consensus       234 --~~~~~~~~~~~~gs~--d~~i~~wd~~~g~~~~  264 (268)
                        .... ....++.+..  ++.++-.|+.+|+.+-
T Consensus       190 ~~~~~~-~~~~vy~~~~~~~~~~~a~~~~~G~~~w  223 (370)
T COG1520         190 YGSPAI-ASGTVYVGSDGYDGILYALNAEDGTLKW  223 (370)
T ss_pred             ccCcee-ecceEEEecCCCcceEEEEEccCCcEee
Confidence              0011 2334444444  5567777777777653

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=87.67  E-value=14  Score=30.10  Aligned_cols=150  Identities=17%  Similarity=0.162  Sum_probs=82.5

Q ss_pred             CeeeEEEecCCCCCcEEEEEe-CCCCeEEeeCCCCCeEEE-eeCccCcEEEEEecCCCcEEEEeeCCCcEEEEe-CCCCC
Q 024372           18 PVVDLFYSPITPDGFFLVSAS-KDSSPMLRNGETGDWIGT-FEGHKGAVWSCCLDANALFSASGSADFTAKLWD-ALTGD   94 (268)
Q Consensus        18 ~v~~~~f~~~~~dg~~l~s~s-~d~~i~iw~~~~~~~~~~-~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~-~~~~~   94 (268)
                      .+.+.+.+   +||+.+|... .++.-.+|-...+..... +.+.  .+..-+|++++...+....+...+++. ..++.
T Consensus        25 ~~~s~AvS---~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~--~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~   99 (253)
T PF10647_consen   25 DVTSPAVS---PDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGG--SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT   99 (253)
T ss_pred             cccceEEC---CCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCC--ccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence            56677776   4888777666 233334443333332222 2332  566678899977666656666667764 33332


Q ss_pred             ee-eeec--cC-CeEEEEEECCCCCEEEEee---CCCeEEEEECCC-CCC-CC-----eEe-cCCcccEEEEEEeCCCCc
Q 024372           95 EK-HSFE--HK-HIVRACAFSEDTHLLLTGG---FEKILRIFDLNR-PDA-PP-----REV-GNSSGSIRTVAWLHSDQT  159 (268)
Q Consensus        95 ~~-~~~~--~~-~~v~~v~~~~~~~~l~s~~---~d~~i~~~d~~~-~~~-~~-----~~~-~~~~~~v~~~~~~~~~~~  159 (268)
                      .. ....  .. ..|..+.++|||..++...   .++.+.+--+.. ... ..     ... ......+..+.|.+++..
T Consensus       100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L  179 (253)
T PF10647_consen  100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTL  179 (253)
T ss_pred             ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEE
Confidence            21 1222  11 2799999999999887655   345555543321 111 10     111 122356789999988766


Q ss_pred             EEEEeeCCCeEEE
Q 024372          160 ILSSCTDSGGVRL  172 (268)
Q Consensus       160 ~~~~~~~d~~i~i  172 (268)
                      ++++...+..+..
T Consensus       180 ~V~~~~~~~~~~~  192 (253)
T PF10647_consen  180 VVLGRSAGGPVVR  192 (253)
T ss_pred             EEEeCCCCCceeE
Confidence            5555554443333

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=87.22  E-value=20  Score=31.58  Aligned_cols=188  Identities=15%  Similarity=0.169  Sum_probs=85.3

Q ss_pred             CCcEEEEEe-CCCCeEEeeCCC----CCeEEEeeC---cc----CcEEEEEecCCCcEEEEe--eCC----CcEEEEeCC
Q 024372           30 DGFFLVSAS-KDSSPMLRNGET----GDWIGTFEG---HK----GAVWSCCLDANALFSASG--SAD----FTAKLWDAL   91 (268)
Q Consensus        30 dg~~l~s~s-~d~~i~iw~~~~----~~~~~~~~~---h~----~~V~~~~~~~~~~~l~s~--s~D----~~v~iw~~~   91 (268)
                      +.++|+..+ .+..|.|.|+.+    .++.+.++.   ++    ..-.++..-|+|.+++|+  ..+    |-+.+.|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            566676666 666788888874    345555543   21    112233335778777664  333    346677777


Q ss_pred             CCCeeeeeccC----CeEEEEEECCCCCEEEEee--------------------CCCeEEEEECCCCCCCCeEecCCcc-
Q 024372           92 TGDEKHSFEHK----HIVRACAFSEDTHLLLTGG--------------------FEKILRIFDLNRPDAPPREVGNSSG-  146 (268)
Q Consensus        92 ~~~~~~~~~~~----~~v~~v~~~~~~~~l~s~~--------------------~d~~i~~~d~~~~~~~~~~~~~~~~-  146 (268)
                      +.+.+..++..    ..-....+.|..++++|..                    +.+.+.+||+.+.+..........+ 
T Consensus       166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~  245 (461)
T PF05694_consen  166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ  245 (461)
T ss_dssp             T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred             cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence            77776666532    2344566777777777753                    3467999999865433222222222 


Q ss_pred             cEEEEEEeCC--CCcEEEEeeCCCeEEEE-eCCCCc----eEEeecC------------------CCCEEEEEECCCCcE
Q 024372          147 SIRTVAWLHS--DQTILSSCTDSGGVRLW-DARSGK----IVQTLET------------------KSPVTSAEVSRDGRY  201 (268)
Q Consensus       147 ~v~~~~~~~~--~~~~~~~~~~d~~i~iw-d~~~~~----~~~~~~~------------------~~~v~~~~~s~~g~~  201 (268)
                      ....+.|.++  ..+-++++.-...|..| -.+.++    .+-++..                  ..-+..|.+|.|.+|
T Consensus       246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf  325 (461)
T PF05694_consen  246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF  325 (461)
T ss_dssp             EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred             ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence            3556777643  33334444433445444 323332    1222211                  112678999999999


Q ss_pred             EEEe--CCCeEEEEeCCC
Q 024372          202 ITTA--DGSSVKFWDANH  217 (268)
Q Consensus       202 l~~~--~~~~v~~wd~~~  217 (268)
                      |-.+  -.+.||-||+..
T Consensus       326 LYvs~W~~GdvrqYDISD  343 (461)
T PF05694_consen  326 LYVSNWLHGDVRQYDISD  343 (461)
T ss_dssp             EEEEETTTTEEEEEE-SS
T ss_pred             EEEEcccCCcEEEEecCC
Confidence            8665  378999999965

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=86.93  E-value=4.3  Score=37.06  Aligned_cols=28  Identities=25%  Similarity=0.573  Sum_probs=21.8

Q ss_pred             CCcEEEEeeCCCeEEEEeCCCCceEEee
Q 024372          157 DQTILSSCTDSGGVRLWDARSGKIVQTL  184 (268)
Q Consensus       157 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~  184 (268)
                      +..++.+-+.|++||+||+.+++++.+.
T Consensus       229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  229 DDTFLFTLSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             TTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence            3445556667899999999999997665

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=86.59  E-value=3.7  Score=22.47  Aligned_cols=38  Identities=11%  Similarity=0.099  Sum_probs=25.8

Q ss_pred             CCCcEEEEe--CCCeEEEEeCCCceeeeEEeCCCCceeeE
Q 024372          197 RDGRYITTA--DGSSVKFWDANHFGLVKGYNMPCNTESAS  234 (268)
Q Consensus       197 ~~g~~l~~~--~~~~v~~wd~~~~~~~~~~~~~~~~~~~~  234 (268)
                      |+++++..+  .++.|.++|..+...+..+.....+..+.
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~   40 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVA   40 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEE
Confidence            567765443  46799999998888777776654444443

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=86.46  E-value=22  Score=31.17  Aligned_cols=144  Identities=11%  Similarity=0.024  Sum_probs=79.3

Q ss_pred             EEEEecCCCcEEEEeeCCCcEEEEeCCCCC-eeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCC----CCe
Q 024372           65 WSCCLDANALFSASGSADFTAKLWDALTGD-EKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDA----PPR  139 (268)
Q Consensus        65 ~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~-~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~----~~~  139 (268)
                      ..+...+++.+++.+..-...+-||-.... ..........+..+.+.+++.+++++ .+|.+.. ....+..    ...
T Consensus       242 ~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~f~  319 (398)
T PLN00033        242 STVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFDFE  319 (398)
T ss_pred             eeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCccccccee
Confidence            334456677666655544334445532211 22233344567888899999887765 4555433 2222211    111


Q ss_pred             EecC--CcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeec----CCCCEEEEEECCCCcEEEEeCCCeEEEE
Q 024372          140 EVGN--SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE----TKSPVTSAEVSRDGRYITTADGSSVKFW  213 (268)
Q Consensus       140 ~~~~--~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~----~~~~v~~~~~s~~g~~l~~~~~~~v~~w  213 (268)
                      ....  ....+..+.+.++ +.++++|.. |.+... ...|+.-+..+    .....+.+.|.++++-++.++++.|.-|
T Consensus       320 ~~~~~~~~~~l~~v~~~~d-~~~~a~G~~-G~v~~s-~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~~  396 (398)
T PLN00033        320 EADIKSRGFGILDVGYRSK-KEAWAAGGS-GILLRS-TDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLLRY  396 (398)
T ss_pred             ecccCCCCcceEEEEEcCC-CcEEEEECC-CcEEEe-CCCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence            1111  1124677777654 456666544 666554 45565544433    1345789999888888888888776543

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=85.66  E-value=21  Score=30.30  Aligned_cols=100  Identities=16%  Similarity=0.222  Sum_probs=54.0

Q ss_pred             eeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCe---EEEe----eCccCcEEEEEecCC----CcEEEEeeC------
Q 024372           19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW---IGTF----EGHKGAVWSCCLDAN----ALFSASGSA------   81 (268)
Q Consensus        19 v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~---~~~~----~~h~~~V~~~~~~~~----~~~l~s~s~------   81 (268)
                      -++++|.|   ||.+++ +...|.|++.+ ..+..   +..+    .........++++|+    +.+.++-+.      
T Consensus         4 P~~~a~~p---dG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~   78 (331)
T PF07995_consen    4 PRSMAFLP---DGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGG   78 (331)
T ss_dssp             EEEEEEET---TSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSS
T ss_pred             ceEEEEeC---CCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCC
Confidence            46899985   887766 56799999988 44443   3333    223456889999984    443333331      


Q ss_pred             CC--cEEEEeCCCC--Ce-----e-eeec----cCCeEEEEEECCCCCEEEEeeCC
Q 024372           82 DF--TAKLWDALTG--DE-----K-HSFE----HKHIVRACAFSEDTHLLLTGGFE  123 (268)
Q Consensus        82 D~--~v~iw~~~~~--~~-----~-~~~~----~~~~v~~v~~~~~~~~l~s~~~d  123 (268)
                      +.  .|.-|.....  ..     + ....    ..+.-..+.|.|++.+.++.+..
T Consensus        79 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~  134 (331)
T PF07995_consen   79 DNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDG  134 (331)
T ss_dssp             SEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-T
T ss_pred             CcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCC
Confidence            12  3333444333  10     1 1111    23456779999999777765443

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=85.05  E-value=7.3  Score=34.32  Aligned_cols=164  Identities=11%  Similarity=0.063  Sum_probs=86.2

Q ss_pred             eEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCe-eeee-c--cC---CeEE-EEEECCCCCEEEEeeCCC
Q 024372           53 WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE-KHSF-E--HK---HIVR-ACAFSEDTHLLLTGGFEK  124 (268)
Q Consensus        53 ~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~-~~~~-~--~~---~~v~-~v~~~~~~~~l~s~~~d~  124 (268)
                      .+..+..-...|..+-..||++.+..-+. .++.++++..... .+.+ +  ..   +.|+ .+..-..+..+..++.||
T Consensus       212 ~i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG  290 (733)
T COG4590         212 IIRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDG  290 (733)
T ss_pred             hhhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCC
Confidence            34445555566777778999987754433 5677777654331 1111 1  11   1121 111112345566777787


Q ss_pred             eEEEE-ECCCCCCCC-eEe---cCCcccEEEEEEeCCC-CcEEEEeeCCCeEEEEeCCCCceEEeecCCCCEEEEEECCC
Q 024372          125 ILRIF-DLNRPDAPP-REV---GNSSGSIRTVAWLHSD-QTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRD  198 (268)
Q Consensus       125 ~i~~~-d~~~~~~~~-~~~---~~~~~~v~~~~~~~~~-~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~  198 (268)
                      .+.-| |.+...... ...   .-...++..+  .|+. ..-+++-...|++..+..-..+.+-.-..-....-+++||+
T Consensus       291 ~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l--~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~  368 (733)
T COG4590         291 LVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFL--LPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPN  368 (733)
T ss_pred             ceeeeeeeecCCCCcceeeeccccCcccceee--ccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcc
Confidence            77655 765433211 110   0011122211  1222 23344555667777765544333221111124567899999


Q ss_pred             CcEEEEeCCCeEEEEeCCCce
Q 024372          199 GRYITTADGSSVKFWDANHFG  219 (268)
Q Consensus       199 g~~l~~~~~~~v~~wd~~~~~  219 (268)
                      +.++.+-+.+.++++.+++..
T Consensus       369 ~~~Ll~e~~gki~~~~l~Nr~  389 (733)
T COG4590         369 QAYLLSEDQGKIRLAQLENRN  389 (733)
T ss_pred             cchheeecCCceEEEEecCCC
Confidence            999999988999999887653

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=84.87  E-value=25  Score=30.36  Aligned_cols=139  Identities=12%  Similarity=0.115  Sum_probs=67.6

Q ss_pred             EEEEEECCCCCEEEEee-----------CCC-eEEEEECCCC--CCC-CeEecCCcccEEEEEEeCCCCcEEEEeeCCCe
Q 024372          105 VRACAFSEDTHLLLTGG-----------FEK-ILRIFDLNRP--DAP-PREVGNSSGSIRTVAWLHSDQTILSSCTDSGG  169 (268)
Q Consensus       105 v~~v~~~~~~~~l~s~~-----------~d~-~i~~~d~~~~--~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~  169 (268)
                      ...++|.++|+++++-.           ..+ .|.+++-..+  ... ...+-..-.....+++.+++  ++++. ....
T Consensus        16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~-~~~i   92 (367)
T TIGR02604        16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVAT-PPDI   92 (367)
T ss_pred             CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeC-CCeE
Confidence            34577888888766532           112 5555543221  111 11221112234567766655  55554 3233


Q ss_pred             EEEEeCCC-------CceE-EeecC-----CCCEEEEEECCCCcEEEE-eCC-------------------CeEEEEeCC
Q 024372          170 VRLWDARS-------GKIV-QTLET-----KSPVTSAEVSRDGRYITT-ADG-------------------SSVKFWDAN  216 (268)
Q Consensus       170 i~iwd~~~-------~~~~-~~~~~-----~~~v~~~~~s~~g~~l~~-~~~-------------------~~v~~wd~~  216 (268)
                      .++.|...       .+.+ ..+..     +...+.+.+.|||++.++ ++.                   +.|.-+|..
T Consensus        93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd  172 (367)
T TIGR02604        93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD  172 (367)
T ss_pred             EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence            34445531       1122 22322     344788999999987654 311                   223333443


Q ss_pred             CceeeeEEeC-CCCceeeEEcCCCCCEEEeccC
Q 024372          217 HFGLVKGYNM-PCNTESASLEPKLGNIFIAGGE  248 (268)
Q Consensus       217 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gs~  248 (268)
                      ..+ +..+.. ..+...+++.+ .|+++++-..
T Consensus       173 g~~-~e~~a~G~rnp~Gl~~d~-~G~l~~tdn~  203 (367)
T TIGR02604       173 GGK-LRVVAHGFQNPYGHSVDS-WGDVFFCDND  203 (367)
T ss_pred             CCe-EEEEecCcCCCccceECC-CCCEEEEccC
Confidence            322 233332 23455677776 6888877443

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=84.85  E-value=19  Score=31.64  Aligned_cols=52  Identities=12%  Similarity=0.097  Sum_probs=39.6

Q ss_pred             CCeeeEEEecC--------CCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEe
Q 024372           17 RPVVDLFYSPI--------TPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCL   69 (268)
Q Consensus        17 ~~v~~~~f~~~--------~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~   69 (268)
                      +.|+++.+-|+        .+|...++.|..+|-+++|.. +|.++..=.-|.++|..+..
T Consensus        57 e~ITsi~clpl~s~~~s~~~~dw~~I~VG~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~  116 (415)
T PF14655_consen   57 ECITSILCLPLSSQKRSTGGPDWTCIAVGTSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKC  116 (415)
T ss_pred             CEEEEEEEEEeecccccCCCCCcEEEEEEecccEEEEEec-cchHHHHHhcCccceEEEEe
Confidence            57888888776        267789999999999999975 67665433457778877765

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=84.76  E-value=11  Score=33.76  Aligned_cols=86  Identities=16%  Similarity=0.196  Sum_probs=47.5

Q ss_pred             CCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeeccCCeEEEE
Q 024372           29 PDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRAC  108 (268)
Q Consensus        29 ~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v  108 (268)
                      +.|..+|-++.+|-+.++-.+.-..-..++..+.-|.+-.++-+..++ +.+                    ..-.+.-+
T Consensus       113 ~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~f-tss--------------------~~ltl~Qa  171 (741)
T KOG4460|consen  113 PTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFF-TSS--------------------TSLTLKQA  171 (741)
T ss_pred             CCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceee-ccC--------------------Cceeeeec
Confidence            567777777888877665432211112233333334433333333332 221                    11135567


Q ss_pred             EECCCC---CEEEEeeCCCeEEEEECCCCC
Q 024372          109 AFSEDT---HLLLTGGFEKILRIFDLNRPD  135 (268)
Q Consensus       109 ~~~~~~---~~l~s~~~d~~i~~~d~~~~~  135 (268)
                      +|+|+.   ..|..-+.|++||+||+....
T Consensus       172 ~WHP~S~~D~hL~iL~sdnviRiy~lS~~t  201 (741)
T KOG4460|consen  172 AWHPSSILDPHLVLLTSDNVIRIYSLSEPT  201 (741)
T ss_pred             cccCCccCCceEEEEecCcEEEEEecCCcc
Confidence            788864   566666789999999986543

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=84.43  E-value=36  Score=31.85  Aligned_cols=160  Identities=9%  Similarity=0.082  Sum_probs=85.7

Q ss_pred             cCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCe--eeeec--cC------CeEEEEEECCCCCEEEEeeC-C---CeE
Q 024372           61 KGAVWSCCLDANALFSASGSADFTAKLWDALTGDE--KHSFE--HK------HIVRACAFSEDTHLLLTGGF-E---KIL  126 (268)
Q Consensus        61 ~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~--~~~~~--~~------~~v~~v~~~~~~~~l~s~~~-d---~~i  126 (268)
                      .++|..+.+.+++..++..-..|.|.+||...+..  .....  ++      ..|...........+++.+. +   -..
T Consensus       129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y  208 (670)
T PF10395_consen  129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY  208 (670)
T ss_pred             ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence            57788899998898888888999999999932221  11111  11      12222211111233333332 2   346


Q ss_pred             EEEECCCCCCCCeEec-----CCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCC-------CEEEEE
Q 024372          127 RIFDLNRPDAPPREVG-----NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS-------PVTSAE  194 (268)
Q Consensus       127 ~~~d~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~-------~v~~~~  194 (268)
                      |++.+........+..     .....-..++|.  .+.+.--  .+++|.+|++...+..+++....       .+.++.
T Consensus       209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~--~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~  284 (670)
T PF10395_consen  209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQ--FGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK  284 (670)
T ss_pred             EEEEeccCCcceEEeehheeccCCcccceEEEe--CCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEee
Confidence            7777732222222221     111122234443  3433322  45899999999888777664321       222222


Q ss_pred             ECCCCcEEEEeCCCeEEEEeCCCceeeeEEe
Q 024372          195 VSRDGRYITTADGSSVKFWDANHFGLVKGYN  225 (268)
Q Consensus       195 ~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~  225 (268)
                       .|.-+.+.-+.+..|.+.|+....++..+.
T Consensus       285 -~~s~nRvLLs~~nkIyLld~~~~siLse~~  314 (670)
T PF10395_consen  285 -PPSPNRVLLSVNNKIYLLDLKFESILSEFE  314 (670)
T ss_pred             -cCCCCeEEEEcCCEEEEEeehhhhhhhhhh
Confidence             233334444555699999997766665555

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=84.33  E-value=13  Score=26.89  Aligned_cols=107  Identities=12%  Similarity=0.060  Sum_probs=60.7

Q ss_pred             EEECCCCCEEEEeeCCCeEEEEECCCCCC-------CCeEecCCcccEEEEEEeC----CCCcEEEEeeCCCeEEEEeCC
Q 024372          108 CAFSEDTHLLLTGGFEKILRIFDLNRPDA-------PPREVGNSSGSIRTVAWLH----SDQTILSSCTDSGGVRLWDAR  176 (268)
Q Consensus       108 v~~~~~~~~l~s~~~d~~i~~~d~~~~~~-------~~~~~~~~~~~v~~~~~~~----~~~~~~~~~~~d~~i~iwd~~  176 (268)
                      -.|......|+.++.-+.|.+.+......       ..+.+ +-...|++++--+    ++.-+|..|+. ..|..||+.
T Consensus         4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~   81 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVE   81 (136)
T ss_pred             EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcc
Confidence            34555566788888888888887653211       11222 3344677765322    22335556665 789999998


Q ss_pred             CCceEEeecCCCCEEEEEECC----CCcEEEEeCCCeEEEEeCC
Q 024372          177 SGKIVQTLETKSPVTSAEVSR----DGRYITTADGSSVKFWDAN  216 (268)
Q Consensus       177 ~~~~~~~~~~~~~v~~~~~s~----~g~~l~~~~~~~v~~wd~~  216 (268)
                      ....+..-+....++++.+-.    +..+++.+.+-.|.=||.+
T Consensus        82 ~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~  125 (136)
T PF14781_consen   82 NNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYE  125 (136)
T ss_pred             cCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCC
Confidence            766554334445677776632    2334455554455555543

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=84.12  E-value=9.2  Score=37.53  Aligned_cols=132  Identities=13%  Similarity=0.046  Sum_probs=78.4

Q ss_pred             EEEEEeCCCCeEEeeCCCCCe-----EEEeeCcc----C--cEEEEEecCCCc-EEEEeeCCCcEEEEeCCCC-Ceeeee
Q 024372           33 FLVSASKDSSPMLRNGETGDW-----IGTFEGHK----G--AVWSCCLDANAL-FSASGSADFTAKLWDALTG-DEKHSF   99 (268)
Q Consensus        33 ~l~s~s~d~~i~iw~~~~~~~-----~~~~~~h~----~--~V~~~~~~~~~~-~l~s~s~D~~v~iw~~~~~-~~~~~~   99 (268)
                      .++..+++-.|..+|+++-..     ..-|..|.    .  .+.++.|.|.-. ..|.+..|+.|++..+... +....+
T Consensus       116 ~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~  195 (1405)
T KOG3630|consen  116 VVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSF  195 (1405)
T ss_pred             EEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhccc
Confidence            344445544666788765321     22222222    2  233445555432 2356678888888776432 233445


Q ss_pred             ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCC-CeEec-CCcccEEEEEEeCCCCcEEEEe
Q 024372          100 EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP-PREVG-NSSGSIRTVAWLHSDQTILSSC  164 (268)
Q Consensus       100 ~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~-~~~~~-~~~~~v~~~~~~~~~~~~~~~~  164 (268)
                      .....+++++|+|.|+.++.|-..|++.-|-..-+... +.... .....|.+|+|.....++++.+
T Consensus       196 p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~  262 (1405)
T KOG3630|consen  196 PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYG  262 (1405)
T ss_pred             CcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEEec
Confidence            66677899999999999999999999988865322110 00100 1246789999987766655543

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=83.79  E-value=20  Score=28.36  Aligned_cols=106  Identities=10%  Similarity=0.188  Sum_probs=58.1

Q ss_pred             ECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCC-----CeEEEE---eCCC--Cc
Q 024372          110 FSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS-----GGVRLW---DARS--GK  179 (268)
Q Consensus       110 ~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d-----~~i~iw---d~~~--~~  179 (268)
                      .++.+.++++ .....|.+|++..........-...+.|..+.++..|.++++-=.+.     ..+|+|   ....  .+
T Consensus        25 ~~g~d~Lfva-~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~  103 (215)
T PF14761_consen   25 CGGPDALFVA-ASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENS  103 (215)
T ss_pred             ccCCceEEEE-cCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCC
Confidence            3443344443 45577999999844433332223457899999998887655432211     256664   3221  11


Q ss_pred             eEE-----------------------eecCCCCEEEEEECCC-CcEEEEeCCCeEEEEeCCC
Q 024372          180 IVQ-----------------------TLETKSPVTSAEVSRD-GRYITTADGSSVKFWDANH  217 (268)
Q Consensus       180 ~~~-----------------------~~~~~~~v~~~~~s~~-g~~l~~~~~~~v~~wd~~~  217 (268)
                      .+.                       .++...++.+++..|- |+++++.. +.+.+|.+..
T Consensus       104 ~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~  164 (215)
T PF14761_consen  104 PVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKY  164 (215)
T ss_pred             cEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEE
Confidence            111                       1112234667777774 66665554 5888888743

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=83.48  E-value=22  Score=33.45  Aligned_cols=101  Identities=18%  Similarity=0.208  Sum_probs=60.6

Q ss_pred             CCcEEEEeeCCCeEEEEeCCC-------C----c---------eEEeecCCCCEEEEEEC--CCCcEEEEeCC-CeEEEE
Q 024372          157 DQTILSSCTDSGGVRLWDARS-------G----K---------IVQTLETKSPVTSAEVS--RDGRYITTADG-SSVKFW  213 (268)
Q Consensus       157 ~~~~~~~~~~d~~i~iwd~~~-------~----~---------~~~~~~~~~~v~~~~~s--~~g~~l~~~~~-~~v~~w  213 (268)
                      +..+|+.|.|||.|.+|-+++       .    +         +.-.+.....+-+++++  ...++++.|++ ..|.+|
T Consensus       113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF  192 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF  192 (717)
T ss_pred             CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence            345777888999999996531       0    0         11112233457788988  77888887754 566665


Q ss_pred             --eCCC--ceeeeEEeCCCCceeeEEcCCC----CC-EEEeccCCCeEEEEEC
Q 024372          214 --DANH--FGLVKGYNMPCNTESASLEPKL----GN-IFIAGGEDMWVHVFDF  257 (268)
Q Consensus       214 --d~~~--~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~gs~d~~i~~wd~  257 (268)
                        .+..  ....+......++-.++|.+..    |. .+++++-.|.+-+|++
T Consensus       193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence              4421  1112233344555566665432    33 6677788888888877

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PRK13684 Ycf48-like protein; Provisional

Probab=82.85  E-value=29  Score=29.57  Aligned_cols=147  Identities=11%  Similarity=0.047  Sum_probs=81.5

Q ss_pred             cCcEEEEEecCCCcEEEEeeCCCcEE-EEeCCCCCeeeee--ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCC
Q 024372           61 KGAVWSCCLDANALFSASGSADFTAK-LWDALTGDEKHSF--EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP  137 (268)
Q Consensus        61 ~~~V~~~~~~~~~~~l~s~s~D~~v~-iw~~~~~~~~~~~--~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~  137 (268)
                      .+.+..+.+.+++.+++.+. .|.+. .++-. +..-...  .....+..+.+.++++.++.+ ..+.+++=..+.+.. 
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~g-g~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s-  247 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEPG-QTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES-  247 (334)
T ss_pred             cceEEEEEECCCCeEEEEeC-CceEEEEcCCC-CCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc-
Confidence            35678888889887766554 44443 22221 1111111  233467888899998877665 457665322222211 


Q ss_pred             CeEecC----CcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecC----CCCEEEEEECCCCcEEEEeCCCe
Q 024372          138 PREVGN----SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET----KSPVTSAEVSRDGRYITTADGSS  209 (268)
Q Consensus       138 ~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~----~~~v~~~~~s~~g~~l~~~~~~~  209 (268)
                      .+....    ....+..+.+.+++ .+++++. +|.+. .....++.-+....    ....+.+.+..+++.++.++.+.
T Consensus       248 W~~~~~~~~~~~~~l~~v~~~~~~-~~~~~G~-~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~  324 (334)
T PRK13684        248 WSKPIIPEITNGYGYLDLAYRTPG-EIWAGGG-NGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGV  324 (334)
T ss_pred             cccccCCccccccceeeEEEcCCC-CEEEEcC-CCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCce
Confidence            111111    11245677777754 4555554 46554 44555555444321    23477888888888888888887


Q ss_pred             EEEEe
Q 024372          210 VKFWD  214 (268)
Q Consensus       210 v~~wd  214 (268)
                      |--|+
T Consensus       325 il~~~  329 (334)
T PRK13684        325 LLRYV  329 (334)
T ss_pred             EEEec
Confidence            77665

>PRK10115 protease 2; Provisional

Probab=82.47  E-value=45  Score=31.59  Aligned_cols=111  Identities=9%  Similarity=0.097  Sum_probs=60.0

Q ss_pred             cEEEEEecCCCcEEEEee-C----CCcEEEEeCCCCCeeee-eccCCeEEEEEECCCCCEEEEeeCC------CeEEEEE
Q 024372           63 AVWSCCLDANALFSASGS-A----DFTAKLWDALTGDEKHS-FEHKHIVRACAFSEDTHLLLTGGFE------KILRIFD  130 (268)
Q Consensus        63 ~V~~~~~~~~~~~l~s~s-~----D~~v~iw~~~~~~~~~~-~~~~~~v~~v~~~~~~~~l~s~~~d------~~i~~~d  130 (268)
                      .+..+.++|++++++-+. .    .-.+++-|+.++..+.. +....  ..++|.+|++.|+-...+      ..+..++
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~  205 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT  205 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence            355677899999876432 2    23578888887753222 11111  458899988766655432      3566677


Q ss_pred             CCCCCCCCe-EecCCcccEEEEEEeC-CCCcEEEEeeC--CCeEEEEeC
Q 024372          131 LNRPDAPPR-EVGNSSGSIRTVAWLH-SDQTILSSCTD--SGGVRLWDA  175 (268)
Q Consensus       131 ~~~~~~~~~-~~~~~~~~v~~~~~~~-~~~~~~~~~~~--d~~i~iwd~  175 (268)
                      +.++...-. ..........-..+.+ ++..+++.+..  ++.+.+++.
T Consensus       206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence            766521111 1212222222222333 55555544332  257888885

>PF01011 PQQ: PQQ enzyme repeat family

Probab=82.33  E-value=3.1  Score=22.65  Aligned_cols=23  Identities=22%  Similarity=0.297  Sum_probs=18.2

Q ss_pred             EEeccCCCeEEEEECCCCcEEee
Q 024372          243 FIAGGEDMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       243 ~~~gs~d~~i~~wd~~~g~~~~~  265 (268)
                      ++.++.|+.|+-.|.++|+.+=.
T Consensus         3 v~~~~~~g~l~AlD~~TG~~~W~   25 (38)
T PF01011_consen    3 VYVGTPDGYLYALDAKTGKVLWK   25 (38)
T ss_dssp             EEEETTTSEEEEEETTTTSEEEE
T ss_pred             EEEeCCCCEEEEEECCCCCEEEe
Confidence            44558899999999999998643

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=81.16  E-value=32  Score=28.94  Aligned_cols=82  Identities=11%  Similarity=0.108  Sum_probs=36.9

Q ss_pred             CeEEEEeCCCCceE--EeecCCCCEEEEEECCCCcE-EEEeCCC----eEEEEeCCCcee--eeEEe---CCCCc-eeeE
Q 024372          168 GGVRLWDARSGKIV--QTLETKSPVTSAEVSRDGRY-ITTADGS----SVKFWDANHFGL--VKGYN---MPCNT-ESAS  234 (268)
Q Consensus       168 ~~i~iwd~~~~~~~--~~~~~~~~v~~~~~s~~g~~-l~~~~~~----~v~~wd~~~~~~--~~~~~---~~~~~-~~~~  234 (268)
                      +.+..||+++.+=.  ..+.........+..-++++ ++++.++    .+..||.++..-  +....   .+... ....
T Consensus       139 ~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~  218 (323)
T TIGR03548       139 NKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAAS  218 (323)
T ss_pred             ceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeE
Confidence            46888898876422  12221122222233334544 4444332    356788765432  22111   11100 1111


Q ss_pred             EcCCCCCEEEeccCC
Q 024372          235 LEPKLGNIFIAGGED  249 (268)
Q Consensus       235 ~~~~~~~~~~~gs~d  249 (268)
                      ....++++++.||.+
T Consensus       219 ~~~~~~~iyv~GG~~  233 (323)
T TIGR03548       219 IKINESLLLCIGGFN  233 (323)
T ss_pred             EEECCCEEEEECCcC
Confidence            222247888898876

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PRK13684 Ycf48-like protein; Provisional

Probab=80.58  E-value=35  Score=29.05  Aligned_cols=148  Identities=11%  Similarity=0.027  Sum_probs=76.0

Q ss_pred             CeEEEEEECCCCCEEEEeeCCCeEE-EEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceE
Q 024372          103 HIVRACAFSEDTHLLLTGGFEKILR-IFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIV  181 (268)
Q Consensus       103 ~~v~~v~~~~~~~~l~s~~~d~~i~-~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~  181 (268)
                      ..+..+.+.+++..++++. .|.+. .+|-. ++.-..........+..+.+.+++.. ++.+. .|.+++=....|+.-
T Consensus       173 g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~g-g~tW~~~~~~~~~~l~~i~~~~~g~~-~~vg~-~G~~~~~s~d~G~sW  248 (334)
T PRK13684        173 GVVRNLRRSPDGKYVAVSS-RGNFYSTWEPG-QTAWTPHQRNSSRRLQSMGFQPDGNL-WMLAR-GGQIRFNDPDDLESW  248 (334)
T ss_pred             ceEEEEEECCCCeEEEEeC-CceEEEEcCCC-CCeEEEeeCCCcccceeeeEcCCCCE-EEEec-CCEEEEccCCCCCcc
Confidence            4577888999887666554 45443 22211 11111112223446777887776654 44443 366643234444443


Q ss_pred             EeecC-----CCCEEEEEECCCCcEEEEeCCCeEEE-EeC-CCceeeeE-EeCCCCceeeEEcCCCCCEEEeccCCCeEE
Q 024372          182 QTLET-----KSPVTSAEVSRDGRYITTADGSSVKF-WDA-NHFGLVKG-YNMPCNTESASLEPKLGNIFIAGGEDMWVH  253 (268)
Q Consensus       182 ~~~~~-----~~~v~~~~~s~~g~~l~~~~~~~v~~-wd~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~  253 (268)
                      +....     ...+..+.+.|++.+++.+.++.+.. -|- +++..++. -..+.....+.+.. +++. .+.+..|.|.
T Consensus       249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~-~~~~-~~~G~~G~il  326 (334)
T PRK13684        249 SKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLLVSKDGGKTWEKDPVGEEVPSNFYKIVFLD-PEKG-FVLGQRGVLL  326 (334)
T ss_pred             ccccCCccccccceeeEEEcCCCCEEEEcCCCeEEEeCCCCCCCeECCcCCCCCcceEEEEEeC-CCce-EEECCCceEE
Confidence            32221     12367888999998888887765543 121 22332221 11222333444443 3444 5566667777


Q ss_pred             EEE
Q 024372          254 VFD  256 (268)
Q Consensus       254 ~wd  256 (268)
                      .|+
T Consensus       327 ~~~  329 (334)
T PRK13684        327 RYV  329 (334)
T ss_pred             Eec
Confidence            775

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	268
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		5e-18
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		5e-18
2h9l_A	329	Wdr5delta23 Length = 329		5e-18
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		5e-18
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		5e-18
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		5e-18
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		5e-18
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		5e-18
2g99_A	308	Structural Basis For The Specific Recognition Of Me		6e-18
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		6e-18
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		6e-18
2gnq_A	336	Structure Of Wdr5 Length = 336		6e-18
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		6e-18
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		6e-18
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		7e-18
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		1e-17
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-17
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		1e-16
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		1e-16
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		1e-16
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		3e-15
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		3e-13
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		3e-13
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		4e-12
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		9e-12
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		1e-11
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		2e-11
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		2e-11
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		2e-11
3zwl_B	369	Structure Of Eukaryotic Translation Initiation Fact		2e-11
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		4e-11
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		2e-10
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		8e-09
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		1e-08
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		2e-08
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		4e-08
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		5e-07
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		2e-07
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		6e-07
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		7e-07
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		7e-07
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		1e-06
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		2e-06
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		2e-06
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		2e-06
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		3e-06
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		5e-06
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		5e-06
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		6e-06
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		7e-06
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		8e-06
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		9e-05
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		1e-04
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		2e-04
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		2e-04

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 88.2 bits (217), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 133/272 (48%), Gaps = 20/272 (7%)
Query: 3   KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
           K   A+     GH++ V  + +SP   +G +L S+S D    +     G +  T  GHK 
Sbjct: 11  KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 67
Query: 63  AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
            +    WS   D+N L SAS   D T K+WD  +G    + + H + V  C F+  ++L+
Sbjct: 68  GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 123
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
           ++G F++ +RI+D+ +     + +   S  +  V +      I+SS  D G  R+WD  S
Sbjct: 124 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 181
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
           G+ ++TL  +   PV+  + S +G+YI  A   +++K WD +    +K Y    N +   
Sbjct: 182 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 241
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
            A+     G   ++G ED  V++++  T E +
Sbjct: 242 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 273

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 88.2 bits (217), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 133/272 (48%), Gaps = 20/272 (7%)
Query: 3   KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
           K   A+     GH++ V  + +SP   +G +L S+S D    +     G +  T  GHK 
Sbjct: 15  KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 71
Query: 63  AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
            +    WS   D+N L SAS   D T K+WD  +G    + + H + V  C F+  ++L+
Sbjct: 72  GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 127
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
           ++G F++ +RI+D+ +     + +   S  +  V +      I+SS  D G  R+WD  S
Sbjct: 128 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 185
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
           G+ ++TL  +   PV+  + S +G+YI  A   +++K WD +    +K Y    N +   
Sbjct: 186 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 245
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
            A+     G   ++G ED  V++++  T E +
Sbjct: 246 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 277

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 88.2 bits (217), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 133/272 (48%), Gaps = 20/272 (7%)
Query: 3   KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
           K   A+     GH++ V  + +SP   +G +L S+S D    +     G +  T  GHK 
Sbjct: 27  KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 83
Query: 63  AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
            +    WS   D+N L SAS   D T K+WD  +G    + + H + V  C F+  ++L+
Sbjct: 84  GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 139
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
           ++G F++ +RI+D+ +     + +   S  +  V +      I+SS  D G  R+WD  S
Sbjct: 140 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 197
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
           G+ ++TL  +   PV+  + S +G+YI  A   +++K WD +    +K Y    N +   
Sbjct: 198 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 257
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
            A+     G   ++G ED  V++++  T E +
Sbjct: 258 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 289

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 87.8 bits (216), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 133/272 (48%), Gaps = 20/272 (7%)
Query: 3   KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
           K   A+     GH++ V  + +SP   +G +L S+S D    +     G +  T  GHK 
Sbjct: 10  KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 66
Query: 63  AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
            +    WS   D+N L SAS   D T K+WD  +G    + + H + V  C F+  ++L+
Sbjct: 67  GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 122
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
           ++G F++ +RI+D+ +     + +   S  +  V +      I+SS  D G  R+WD  S
Sbjct: 123 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 180
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
           G+ ++TL  +   PV+  + S +G+YI  A   +++K WD +    +K Y    N +   
Sbjct: 181 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 240
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
            A+     G   ++G ED  V++++  T E +
Sbjct: 241 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 272

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 87.8 bits (216), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 133/272 (48%), Gaps = 20/272 (7%)
Query: 3   KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
           K   A+     GH++ V  + +SP   +G +L S+S D    +     G +  T  GHK 
Sbjct: 16  KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 72
Query: 63  AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
            +    WS   D+N L SAS   D T K+WD  +G    + + H + V  C F+  ++L+
Sbjct: 73  GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 128
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
           ++G F++ +RI+D+ +     + +   S  +  V +      I+SS  D G  R+WD  S
Sbjct: 129 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 186
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
           G+ ++TL  +   PV+  + S +G+YI  A   +++K WD +    +K Y    N +   
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 246
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
            A+     G   ++G ED  V++++  T E +
Sbjct: 247 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 278

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 87.8 bits (216), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 133/272 (48%), Gaps = 20/272 (7%)
Query: 3   KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
           K   A+     GH++ V  + +SP   +G +L S+S D    +     G +  T  GHK 
Sbjct: 16  KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 72
Query: 63  AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
            +    WS   D+N L SAS   D T K+WD  +G    + + H + V  C F+  ++L+
Sbjct: 73  GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 128
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
           ++G F++ +RI+D+ +     + +   S  +  V +      I+SS  D G  R+WD  S
Sbjct: 129 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 186
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
           G+ ++TL  +   PV+  + S +G+YI  A   +++K WD +    +K Y    N +   
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 246
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
            A+     G   ++G ED  V++++  T E +
Sbjct: 247 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 278

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 87.8 bits (216), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 133/272 (48%), Gaps = 20/272 (7%)
Query: 3   KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
           K   A+     GH++ V  + +SP   +G +L S+S D    +     G +  T  GHK 
Sbjct: 9   KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 65
Query: 63  AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
            +    WS   D+N L SAS   D T K+WD  +G    + + H + V  C F+  ++L+
Sbjct: 66  GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 121
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
           ++G F++ +RI+D+ +     + +   S  +  V +      I+SS  D G  R+WD  S
Sbjct: 122 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 179
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
           G+ ++TL  +   PV+  + S +G+YI  A   +++K WD +    +K Y    N +   
Sbjct: 180 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 239
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
            A+     G   ++G ED  V++++  T E +
Sbjct: 240 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 271

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 87.8 bits (216), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 133/272 (48%), Gaps = 20/272 (7%)
Query: 3   KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
           K   A+     GH++ V  + +SP   +G +L S+S D    +     G +  T  GHK 
Sbjct: 10  KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 66
Query: 63  AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
            +    WS   D+N L SAS   D T K+WD  +G    + + H + V  C F+  ++L+
Sbjct: 67  GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 122
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
           ++G F++ +RI+D+ +     + +   S  +  V +      I+SS  D G  R+WD  S
Sbjct: 123 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 180
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
           G+ ++TL  +   PV+  + S +G+YI  A   +++K WD +    +K Y    N +   
Sbjct: 181 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 240
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
            A+     G   ++G ED  V++++  T E +
Sbjct: 241 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 272

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 87.8 bits (216), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 133/272 (48%), Gaps = 20/272 (7%)
Query: 3   KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
           K   A+     GH++ V  + +SP   +G +L S+S D    +     G +  T  GHK 
Sbjct: 6   KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 62
Query: 63  AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
            +    WS   D+N L SAS   D T K+WD  +G    + + H + V  C F+  ++L+
Sbjct: 63  GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 118
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
           ++G F++ +RI+D+ +     + +   S  +  V +      I+SS  D G  R+WD  S
Sbjct: 119 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 176
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
           G+ ++TL  +   PV+  + S +G+YI  A   +++K WD +    +K Y    N +   
Sbjct: 177 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 236
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
            A+     G   ++G ED  V++++  T E +
Sbjct: 237 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 268

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 87.8 bits (216), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 133/272 (48%), Gaps = 20/272 (7%)
Query: 3   KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
           K   A+     GH++ V  + +SP   +G +L S+S D    +     G +  T  GHK 
Sbjct: 16  KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 72
Query: 63  AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
            +    WS   D+N L SAS   D T K+WD  +G    + + H + V  C F+  ++L+
Sbjct: 73  GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 128
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
           ++G F++ +RI+D+ +     + +   S  +  V +      I+SS  D G  R+WD  S
Sbjct: 129 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 186
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
           G+ ++TL  +   PV+  + S +G+YI  A   +++K WD +    +K Y    N +   
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 246
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
            A+     G   ++G ED  V++++  T E +
Sbjct: 247 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 278

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 87.8 bits (216), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 133/272 (48%), Gaps = 20/272 (7%)
Query: 3   KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
           K   A+     GH++ V  + +SP   +G +L S+S D    +     G +  T  GHK 
Sbjct: 13  KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 69
Query: 63  AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
            +    WS   D+N L SAS   D T K+WD  +G    + + H + V  C F+  ++L+
Sbjct: 70  GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
           ++G F++ +RI+D+ +     + +   S  +  V +      I+SS  D G  R+WD  S
Sbjct: 126 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 183
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
           G+ ++TL  +   PV+  + S +G+YI  A   +++K WD +    +K Y    N +   
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 243
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
            A+     G   ++G ED  V++++  T E +
Sbjct: 244 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 275

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 87.8 bits (216), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 133/272 (48%), Gaps = 20/272 (7%)
Query: 3   KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
           K   A+     GH++ V  + +SP   +G +L S+S D    +     G +  T  GHK 
Sbjct: 34  KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 90
Query: 63  AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
            +    WS   D+N L SAS   D T K+WD  +G    + + H + V  C F+  ++L+
Sbjct: 91  GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 146
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
           ++G F++ +RI+D+ +     + +   S  +  V +      I+SS  D G  R+WD  S
Sbjct: 147 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 204
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
           G+ ++TL  +   PV+  + S +G+YI  A   +++K WD +    +K Y    N +   
Sbjct: 205 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 264
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
            A+     G   ++G ED  V++++  T E +
Sbjct: 265 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 296

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 87.8 bits (216), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 133/272 (48%), Gaps = 20/272 (7%)
Query: 3   KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
           K   A+     GH++ V  + +SP   +G +L S+S D    +     G +  T  GHK 
Sbjct: 13  KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 69
Query: 63  AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
            +    WS   D+N L SAS   D T K+WD  +G    + + H + V  C F+  ++L+
Sbjct: 70  GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
           ++G F++ +RI+D+ +     + +   S  +  V +      I+SS  D G  R+WD  S
Sbjct: 126 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 183
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
           G+ ++TL  +   PV+  + S +G+YI  A   +++K WD +    +K Y    N +   
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 243
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
            A+     G   ++G ED  V++++  T E +
Sbjct: 244 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 275

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 87.8 bits (216), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 133/272 (48%), Gaps = 20/272 (7%)
Query: 3   KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
           K   A+     GH++ V  + +SP   +G +L S+S D    +     G +  T  GHK 
Sbjct: 32  KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 88
Query: 63  AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
            +    WS   D+N L SAS   D T K+WD  +G    + + H + V  C F+  ++L+
Sbjct: 89  GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 144
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
           ++G F++ +RI+D+ +     + +   S  +  V +      I+SS  D G  R+WD  S
Sbjct: 145 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 202
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
           G+ ++TL  +   PV+  + S +G+YI  A   +++K WD +    +K Y    N +   
Sbjct: 203 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 262
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
            A+     G   ++G ED  V++++  T E +
Sbjct: 263 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 294

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 87.4 bits (215), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 133/272 (48%), Gaps = 20/272 (7%)
Query: 3   KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
           K   A+     GH++ V  + +SP   +G +L S+S D    +     G +  T  GHK 
Sbjct: 13  KPNYALMFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 69
Query: 63  AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
            +    WS   D+N L SAS   D T K+WD  +G    + + H + V  C F+  ++L+
Sbjct: 70  GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
           ++G F++ +RI+D+ +     + +   S  +  V +      I+SS  D G  R+WD  S
Sbjct: 126 VSGSFDESVRIWDV-KTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 183
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
           G+ ++TL  +   PV+  + S +G+YI  A   +++K WD +    +K Y    N +   
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 243
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
            A+     G   ++G ED  V++++  T E +
Sbjct: 244 FANFSVTGGKWIVSGSEDNMVYIWNLQTKEIV 275

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 132/272 (48%), Gaps = 20/272 (7%)
Query: 3   KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
           K   A+     GH++ V  + +SP   +G +L S+S D    +     G +  T  GHK 
Sbjct: 13  KPNYALMFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 69
Query: 63  AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
            +    WS   D+N L SAS   D T K+WD  +G    + + H + V  C F+  ++L+
Sbjct: 70  GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
           ++G F++ +RI+D+ +     + +   S  +  V +      I+SS  D G  R+WD  S
Sbjct: 126 VSGSFDESVRIWDV-KTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 183
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
           G+ ++TL  +   PV+  + S +G+YI  A   + +K WD +    +K Y    N +   
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCI 243
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
            A+     G   ++G ED  V++++  T E +
Sbjct: 244 FANFSVTGGKWIVSGSEDNMVYIWNLQTKEIV 275

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/272 (27%), Positives = 133/272 (48%), Gaps = 20/272 (7%)
Query: 3   KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
           K   A+     GH++ V  + +SP   +G +L ++S D    +     G +  T  GHK 
Sbjct: 13  KPNYALKFTLAGHTKAVSSVKFSP---NGEWLAASSADKLIKIWGAYDGKFEKTISGHKL 69
Query: 63  AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
            +    WS   D+N L SAS   D T K+WD  +G    + + H + V  C F+  ++L+
Sbjct: 70  GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
           ++G F++ +RI+D+ +     + +   S  +  V +      I+SS  D G  R+WD  S
Sbjct: 126 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 183
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
           G+ ++TL  +   PV+  + S +G+YI  A   +++K WD +    +K Y    N +   
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 243
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
            A+     G   ++G ED  V++++  T E +
Sbjct: 244 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 275

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 105/225 (46%), Gaps = 24/225 (10%)
Query: 17  RPVVD-LFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALF 75
           RP  D ++++  + DG  + S   D +  +   ETG+ +   + H+  V  C   ++  +
Sbjct: 612 RPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSY 671
Query: 76  SASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFS-EDTHLLL-TGGFEKILRIFDLN 132
            A+ SAD   K+WD+ TG   H++ EH   V  C F+ +  HLLL TG  +  L+++DLN
Sbjct: 672 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 731
Query: 133 RPDAPPREVG--NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK--- 187
           + +      G  NS    R       D  +L+SC+  G +RLWD RS    +++  K   
Sbjct: 732 QKECRNTMFGHTNSVNHCR----FSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF 787
Query: 188 ----SPVTSAEV-------SRDGRYITTADGSSVKFWDANHFGLV 221
                P    EV       S DG  I  A  + V  +D +  GL+
Sbjct: 788 LSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLL 832

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 105/225 (46%), Gaps = 24/225 (10%)
Query: 17  RPVVD-LFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALF 75
           RP  D ++++  + DG  + S   D +  +   ETG+ +   + H+  V  C   ++  +
Sbjct: 619 RPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSY 678
Query: 76  SASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFS-EDTHLLL-TGGFEKILRIFDLN 132
            A+ SAD   K+WD+ TG   H++ EH   V  C F+ +  HLLL TG  +  L+++DLN
Sbjct: 679 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 738
Query: 133 RPDAPPREVG--NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK--- 187
           + +      G  NS    R       D  +L+SC+  G +RLWD RS    +++  K   
Sbjct: 739 QKECRNTMFGHTNSVNHCR----FSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF 794
Query: 188 ----SPVTSAEV-------SRDGRYITTADGSSVKFWDANHFGLV 221
                P    EV       S DG  I  A  + V  +D +  GL+
Sbjct: 795 LSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLL 839

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 79.0 bits (193), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 71/212 (33%), Positives = 102/212 (48%), Gaps = 24/212 (11%)
Query: 14  GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA 73
           GHS  V  + +SP   DG  + SAS D +  L N   G  + T  GH  +VW      + 
Sbjct: 301 GHSSSVWGVAFSP---DGQTIASASDDKTVKLWN-RNGQHLQTLTGHSSSVWGVAFSPDG 356
Query: 74  LFSASGSADFTAKLWD-------ALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKIL 126
              AS S D T KLW+        LTG       H   VR  AFS D   + +   +K +
Sbjct: 357 QTIASASDDKTVKLWNRNGQLLQTLTG-------HSSSVRGVAFSPDGQTIASASDDKTV 409
Query: 127 RIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET 186
           +++  NR     + +   S S+  VA+   DQTI +S +D   V+LW+ R+G+++QTL  
Sbjct: 410 KLW--NRNGQLLQTLTGHSSSVWGVAFSPDDQTI-ASASDDKTVKLWN-RNGQLLQTLTG 465
Query: 187 -KSPVTSAEVSRDGRYITTA-DGSSVKFWDAN 216
             S V     S DG+ I +A D  +VK W+ N
Sbjct: 466 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 497

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 120/276 (43%), Gaps = 21/276 (7%)
Query: 2   DKRKVAVPL-VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
           D+    +P     GHS  V D+    I+ DG F +S S D +  L +  TG     F GH
Sbjct: 48  DETNYGIPQRALRGHSHFVSDVV---ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGH 104
Query: 61  KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE---HKHIVRACAFSEDTH-- 115
              V S    ++     SGS D T KLW+ L G  K++ +   H   V    FS ++   
Sbjct: 105 TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTL-GVCKYTVQDESHSEWVSCVRFSPNSSNP 163
Query: 116 LLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA 175
           ++++ G++K++++++L         +G+ +G + TV  +  D ++ +S    G   LWD 
Sbjct: 164 IIVSCGWDKLVKVWNLANCKLKTNHIGH-TGYLNTVT-VSPDGSLCASGGKDGQAMLWDL 221
Query: 176 RSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASL 235
             GK + TL+    + +   S +  ++  A G S+K WD     +V        + S+  
Sbjct: 222 NEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKA 281
Query: 236 EPKL---------GNIFIAGGEDMWVHVFDFHTGEQ 262
           EP           G    AG  D  V V+    G +
Sbjct: 282 EPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGTR 317

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 120/276 (43%), Gaps = 21/276 (7%)
Query: 2   DKRKVAVPL-VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
           D+    +P     GHS  V D+    I+ DG F +S S D +  L +  TG     F GH
Sbjct: 71  DETNYGIPQRALRGHSHFVSDVV---ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGH 127
Query: 61  KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE---HKHIVRACAFSEDTH-- 115
              V S    ++     SGS D T KLW+ L G  K++ +   H   V    FS ++   
Sbjct: 128 TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTL-GVCKYTVQDESHSEWVSCVRFSPNSSNP 186
Query: 116 LLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA 175
           ++++ G++K++++++L         +G+ +G + TV  +  D ++ +S    G   LWD 
Sbjct: 187 IIVSCGWDKLVKVWNLANCKLKTNHIGH-TGYLNTVT-VSPDGSLCASGGKDGQAMLWDL 244
Query: 176 RSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASL 235
             GK + TL+    + +   S +  ++  A G S+K WD     +V        + S+  
Sbjct: 245 NEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKA 304
Query: 236 EPKL---------GNIFIAGGEDMWVHVFDFHTGEQ 262
           EP           G    AG  D  V V+    G +
Sbjct: 305 EPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGTR 340

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 122/295 (41%), Gaps = 50/295 (16%)
Query: 9   PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC 68
           P V  GH   V+    + +   G  +VS S D++  + +  TG  + T  GH G VWS  
Sbjct: 111 PKVLKGHDDHVI----TCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQ 166
Query: 69  LDANALFSASGSADFTAKLWDALTGDEKHS-FEHKHIVRACAFSEDTHLLLTGGFEKILR 127
           +  N +   SGS D T K+W+A TG+  H+ + H   VR     E    +++G  +  LR
Sbjct: 167 MRDNIII--SGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLR 222
Query: 128 IFDLNRPDAPPREVGNSSGSIRTVAW------------------------LHSDQ----- 158
           ++D+         +G+ + ++R V +                        LH+ Q     
Sbjct: 223 VWDIETGQCLHVLMGHVA-AVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNR 281
Query: 159 ---------TILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSS 209
                     ++S   D+  +R+WD  +G  + TL     +TS    +D   ++    S+
Sbjct: 282 VYSLQFDGIHVVSGSLDT-SIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADST 340
Query: 210 VKFWDANHFGLVKGYNMPCNTESASLEPKLG-NIFIAGGEDMWVHVFDFHTGEQI 263
           VK WD      ++    P   +SA    +   N  I   +D  V ++D  TGE I
Sbjct: 341 VKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFI 395

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 67.0 bits (162), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 119/275 (43%), Gaps = 20/275 (7%)
Query: 2   DKRKVAVPLVC-HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
           D +K  VP+    GHS  V D     +T DG + +SAS D +  L +  TG+    F GH
Sbjct: 50  DDQKFGVPVRSFKGHSHIVQD---CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 61  KGAVWSCCLDANALFSASGSADFTAKLW----DALTGDEKHS--FEHKHIVRACAFSEDT 114
           K  V S  +D  A    SGS D T K+W      L     H+       +V      +D+
Sbjct: 107 KSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 166
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
             +++ G +K+++ ++LN+       +G++S +I T+     D T+++S    G + LW+
Sbjct: 167 VTIISAGNDKMVKAWNLNQFQIEADFIGHNS-NINTLT-ASPDGTLIASAGKDGEIMLWN 224
Query: 175 ARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESAS 234
             + K + TL  +  V S   S +  ++  A  + +K +  +   LV          SA+
Sbjct: 225 LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAA 284
Query: 235 LEPKL--------GNIFIAGGEDMWVHVFDFHTGE 261
            EP          G    AG  D  + V+   T  
Sbjct: 285 AEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 319

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 103/227 (45%), Gaps = 28/227 (12%)
Query: 13  HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN 72
           HGH   V  +    I P+G  +VSAS+D +  +   +TG  + TF GH+  V     + +
Sbjct: 189 HGHDHNVSSV---SIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD 245
Query: 73  ALFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTH---------------- 115
               AS S D T ++W   T + K    EH+H+V   +++ ++                 
Sbjct: 246 GTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG 305
Query: 116 ----LLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR 171
                LL+G  +K ++++D++        VG+ +  +R V   HS    + SC D   +R
Sbjct: 306 KPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW-VRGVL-FHSGGKFILSCADDKTLR 363
Query: 172 LWDARSGKIVQTLETKSP-VTSAEVSRDGRYITTAD-GSSVKFWDAN 216
           +WD ++ + ++TL      VTS +  +   Y+ T     +VK W+  
Sbjct: 364 VWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 120/275 (43%), Gaps = 20/275 (7%)
Query: 2   DKRKVAVPLVC-HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
           D +K  VP+    GHS  V D     +T DG + +SAS D +  L +  TG+    F GH
Sbjct: 44  DDQKFGVPVRSFKGHSHIVQD---CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 100
Query: 61  KGAVWSCCLDANALFSASGSADFTAKLW----DALTGDEKHS--FEHKHIVRACAFSEDT 114
           K  V S  +D  A    SGS D T K+W      L     H+       +V      +D+
Sbjct: 101 KSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 160
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
             +++ G +K+++ ++LN+       +G++S +I T+     D T+++S    G + LW+
Sbjct: 161 VTIISAGNDKMVKAWNLNQFQIEADFIGHNS-NINTLT-ASPDGTLIASAGKDGEIMLWN 218
Query: 175 ARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLV-------KGYNMP 227
             + K + TL  +  V S   S +  ++  A  + +K +  +   LV        GY+  
Sbjct: 219 LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKA 278
Query: 228 CNTESASLE-PKLGNIFIAGGEDMWVHVFDFHTGE 261
               + SL     G    AG  D  + V+   T  
Sbjct: 279 AEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 313

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 120/275 (43%), Gaps = 20/275 (7%)
Query: 2   DKRKVAVPLVC-HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
           D +K  VP+    GHS  V D     +T DG + +SAS D +  L +  TG+    F GH
Sbjct: 50  DDQKFGVPVRSFKGHSHIVQD---CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 61  KGAVWSCCLDANALFSASGSADFTAKLW----DALTGDEKHS--FEHKHIVRACAFSEDT 114
           K  V S  +D  A    SGS D T K+W      L     H+       +V      +D+
Sbjct: 107 KSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 166
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
             +++ G +K+++ ++LN+       +G++S +I T+     D T+++S    G + LW+
Sbjct: 167 VTIISAGNDKMVKAWNLNQFQIEADFIGHNS-NINTLT-ASPDGTLIASAGKDGEIMLWN 224
Query: 175 ARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLV-------KGYNMP 227
             + K + TL  +  V S   S +  ++  A  + +K +  +   LV        GY+  
Sbjct: 225 LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKA 284
Query: 228 CNTESASLE-PKLGNIFIAGGEDMWVHVFDFHTGE 261
               + SL     G    AG  D  + V+   T  
Sbjct: 285 AEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 319

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 120/275 (43%), Gaps = 20/275 (7%)
Query: 2   DKRKVAVPLVC-HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
           D +K  VP+    GHS  V D     +T DG + +SAS D +  L +  TG+    F GH
Sbjct: 50  DDQKFGVPVRSFKGHSHIVQD---CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 61  KGAVWSCCLDANALFSASGSADFTAKLW----DALTGDEKHS--FEHKHIVRACAFSEDT 114
           K  V S  +D  A    SGS D T K+W      L     H+       +V      +D+
Sbjct: 107 KSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 166
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
             +++ G +K+++ ++LN+       +G++S +I T+     D T+++S    G + LW+
Sbjct: 167 VTIISAGNDKMVKAWNLNQFQIEADFIGHNS-NINTLT-ASPDGTLIASAGKDGEIMLWN 224
Query: 175 ARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLV-------KGYNMP 227
             + K + TL  +  V S   S +  ++  A  + +K +  +   LV        GY+  
Sbjct: 225 LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKA 284
Query: 228 CNTESASLE-PKLGNIFIAGGEDMWVHVFDFHTGE 261
               + SL     G    AG  D  + V+   T  
Sbjct: 285 AEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 319

>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 115/257 (44%), Gaps = 26/257 (10%)
Query: 14  GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA 73
           GH RP+  + Y+    +G  L S SKDSS  +     G+ +GT +GH G +WS  +D   
Sbjct: 30  GHERPLTQVKYNK---EGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFT 86
Query: 74  LFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILR------ 127
            +  +GSAD++ KLWD   G    +++    V+   FS   +  L    + +++      
Sbjct: 87  KYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFL-AILDNVMKNPGSIN 145
Query: 128 IFDLNRPDA----------PPREVGNSSG-SIRTVA-WLHSDQTILSSCTDSGGVRLWDA 175
           I+++ R  A          P  ++    G    TVA W    + I++   D G +  +D 
Sbjct: 146 IYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKD-GKISKYDV 204
Query: 176 RSG-KIVQTLET-KSPVTSAEVSRDGRYITTADGSSVKFW-DANHFGLVKGYNMPCNTES 232
            +  + V +++  +  ++  + S D  Y  T+   +  F  D +   ++K Y   C   +
Sbjct: 205 SNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNT 264
Query: 233 ASLEPKLGNIFIAGGED 249
           A + P    I + GG++
Sbjct: 265 AVITPLKEFIILGGGQE 281

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 119/269 (44%), Gaps = 20/269 (7%)
Query: 2   DKRKVAVPLVC-HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
           D +K  VP+    GHS  V D     +T DG + +SAS D +  L +  TG+    F GH
Sbjct: 50  DDQKFGVPVRSFKGHSHIVQD---CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 61  KGAVWSCCLDANALFSASGSADFTAKLW----DALTGDEKHS--FEHKHIVRACAFSEDT 114
           K  V S  +D  A    SGS D T K+W      L     H+       +V      +D+
Sbjct: 107 KSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 166
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
             +++ G +K+++ ++LN+       +G++S +I T+     D T+++S    G + LW+
Sbjct: 167 VTIISAGNDKMVKAWNLNQFQIEADFIGHNS-NINTLT-ASPDGTLIASAGKDGEIMLWN 224
Query: 175 ARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLV-------KGYNMP 227
             + K + TL  +  V S   S +  ++  A  + +K +  +   LV        GY+  
Sbjct: 225 LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKA 284
Query: 228 CNTESASLE-PKLGNIFIAGGEDMWVHVF 255
               + SL     G    AG  D  + V+
Sbjct: 285 AEPHAVSLAWSADGQTLFAGYTDNVIRVW 313

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 118/275 (42%), Gaps = 20/275 (7%)
Query: 2   DKRKVAVPLVC-HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
           D +K  VP+    GHS  V D     +T DG + +SAS D +  L +  TG+    F GH
Sbjct: 50  DDQKFGVPVRSFKGHSHIVQDC---TLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 61  KGAVWSCCLDANALFSASGSADFTAKLW----DALTGDEKHS--FEHKHIVRACAFSEDT 114
           K  V S  +D  A    SGS D T K+W      L     H+       +V      +D+
Sbjct: 107 KSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 166
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
             +++ G +K ++ ++LN+       +G++S +I T+     D T+++S    G + LW+
Sbjct: 167 VTIISAGNDKXVKAWNLNQFQIEADFIGHNS-NINTLT-ASPDGTLIASAGKDGEIXLWN 224
Query: 175 ARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLV-------KGYNMP 227
             + K   TL  +  V S   S +  ++  A  + +K +  +   LV        GY+  
Sbjct: 225 LAAKKAXYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKA 284
Query: 228 CNTESASLE-PKLGNIFIAGGEDMWVHVFDFHTGE 261
               + SL     G    AG  D  + V+   T  
Sbjct: 285 AEPHAVSLAWSADGQTLFAGYTDNVIRVWQVXTAN 319

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 57.4 bits (137), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 101/226 (44%), Gaps = 13/226 (5%)
Query: 14  GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA 73
           GHS  V D+    ++ DG F +S S D    L +   G     F GH   V S     + 
Sbjct: 428 GHSHFVEDVV---LSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDN 484
Query: 74  LFSASGSADFTAKLWDALTGDEKHSFE-----HKHIVRACAFSEDT--HLLLTGGFEKIL 126
               S S D T KLW+ L G+ K++       H+  V    FS +T    +++  ++K +
Sbjct: 485 RQIVSASRDRTIKLWNTL-GECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTV 543
Query: 127 RIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET 186
           ++++L+         G++ G + TVA +  D ++ +S    G V LWD   GK + +LE 
Sbjct: 544 KVWNLSNCKLRSTLAGHT-GYVSTVA-VSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA 601
Query: 187 KSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTES 232
            S + +   S +  ++  A    +K WD     +V+   +    E+
Sbjct: 602 NSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEA 647

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 95/216 (43%), Gaps = 15/216 (6%)
Query: 13  HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN 72
            GHS  V D+    ++ +G F VSAS D S  L N + G     F GH   V S     +
Sbjct: 64  EGHSAFVSDV---ALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPD 120
Query: 73  ALFSASGSADFTAKLWDALTGDEKHSFE---HKHIVRACAFSE--DTHLLLTGGFEKILR 127
                SG  D   ++W+ + G+  H+     H   V    FS   D  ++++GG++ +++
Sbjct: 121 NRQIVSGGRDNALRVWN-VKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVK 179
Query: 128 IFDLNRPDAPPREVGNSSGSIRTV--AWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE 185
           ++DL    A  R V +  G    V    +  D ++ +S    G  RLWD   G+ +  + 
Sbjct: 180 VWDL----ATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMA 235
Query: 186 TKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLV 221
             +P+     S +  ++  A    ++ +D  +  ++
Sbjct: 236 AGAPINQICFSPNRYWMCAATEKGIRIFDLENKDII 271

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 81/191 (42%), Gaps = 32/191 (16%)
Query: 11  VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWI--GTFEGHKGAVWSCC 68
           V + H++ V  + + P       L SAS D +  L   E  DW+   T EGH+  VWS  
Sbjct: 145 VLNSHTQDVKHVVWHPSQE---LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLA 201
Query: 69  LDANALFSASGSADFTAKLW-DALTGDEKH----------------SFEHKHIVRACAFS 111
            D +    AS S D T ++W   L G+E+                 S  H   +   A+ 
Sbjct: 202 FDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWC 261
Query: 112 EDTHLLLTGGFEKILRIFDLNRPDAPPREVGNS---------SGSIRTVAWLHSDQTILS 162
           + T  L T   +  +R+F  + P++ P++   S         S  +  VAW   +  +L+
Sbjct: 262 QLTGALATACGDDAIRVFQED-PNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLA 320
Query: 163 SCTDSGGVRLW 173
           SC+D G V  W
Sbjct: 321 SCSDDGEVAFW 331

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 88/204 (43%), Gaps = 25/204 (12%)
Query: 1   MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
           ++ RK+   ++  GH + +  L Y    P G  LVS S D +  + +  TG    T    
Sbjct: 152 IENRKIV--MILQGHEQDIYSLDY---FPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE 206
Query: 61  KGAVWSCCLDANALFSASGSADFTAKLWDALTG--------DEKHSFEHKHIVRACAFSE 112
            G         +  + A+GS D   ++WD+ TG        + +    HK  V +  F+ 
Sbjct: 207 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR 266
Query: 113 DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGS-----------IRTVAWLHSDQTIL 161
           D   +++G  ++ +++++L   +        +SG+           + +VA   +D+ IL
Sbjct: 267 DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYIL 326
Query: 162 SSCTDSGGVRLWDARSGKIVQTLE 185
           S   D  GV  WD +SG  +  L+
Sbjct: 327 SGSKDR-GVLFWDKKSGNPLLMLQ 349

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 59/280 (21%), Positives = 115/280 (41%), Gaps = 34/280 (12%)
Query: 9   PLVCHGHSRPVVDLFYSPI--TPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWS 66
           P   +  S P  DL+   +  +PDG FL + ++D    + + E    +   +GH+  ++S
Sbjct: 111 PENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYS 170
Query: 67  CCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSE-DTHLLLTGGFEKI 125
                +     SGS D T ++WD  TG    +   +  V   A S  D   +  G  ++ 
Sbjct: 171 LDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRA 230
Query: 126 LRIFD------LNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK 179
           +R++D      + R D+          S+ +V +    Q+++S   D   V+LW+ ++  
Sbjct: 231 VRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR-SVKLWNLQNAN 289
Query: 180 IVQTLETKSP---------------VTSAEVSRDGRYITT-ADGSSVKFWD---ANHFGL 220
                ++K+P               V S   +++  YI + +    V FWD    N   +
Sbjct: 290 --NKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLM 347
Query: 221 VKGYNMPCNTESASLEPKLG---NIFIAGGEDMWVHVFDF 257
           ++G+     + + +    LG   N+F  G  D    ++ +
Sbjct: 348 LQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 387

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 114/279 (40%), Gaps = 27/279 (9%)
Query: 11  VCHGHSRPVVDL---FYSPITPDGFFLVSASKDSSPML-------RNGETGDWIGTFEGH 60
           +  GHS  V  +   F      D   L+S S+D + M+       +NG  G       GH
Sbjct: 16  ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGH 75
Query: 61  KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLT 119
              V    L     F+ S S D T +LWD  TG     F  H+  V + AFS D   +L+
Sbjct: 76  NHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILS 135
Query: 120 GGFEKILRIFD-LNRPDAPPREVGNSSGSIRTVAW---LHSDQTI------LSSCTDSGG 169
            G E+ +++++ L        E  N S  +  V +   + S   +       +S    G 
Sbjct: 136 AGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGR 195
Query: 170 VRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGL-VKGYNM 226
           +++W+  + +I  T +  +S V    +S +G+YI T      +  WD  +     + ++ 
Sbjct: 196 LKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDA 254
Query: 227 PCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAI 265
                  +  PKL   ++A G D  V +F+  T  +  +
Sbjct: 255 GSTINQIAFNPKLQ--WVAVGTDQGVKIFNLMTQSKAPV 291

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 95/227 (41%), Gaps = 18/227 (7%)
Query: 56  TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDT 114
           T +GH G V+S        +  S S D    +W+ALT  + H+ + H   V  CAF+ + 
Sbjct: 61  TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG 120
Query: 115 HLLLTGGFEKILRIFDL----NRPDAPP--REVGNSSGSIRTVAWLHSDQTILSSCTDSG 168
             +  GG +    IF+L    +R    P  R +    G   +  ++   +T L + +   
Sbjct: 121 QSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQ 180
Query: 169 GVRLWDARSGKIVQTLETKSP------VTSAEVS--RDGRYITTADGSSVKFWDANHFG- 219
              LWD  +G+ +    ++ P      V S  ++      +I+ +  ++V+ WD      
Sbjct: 181 TCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR 240
Query: 220 LVKGYN-MPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAI 265
            V+ Y+    +  S    P  G  F  G +D    +FD  TG Q+ +
Sbjct: 241 AVRTYHGHEGDINSVKFFPD-GQRFGTGSDDGTCRLFDMRTGHQLQV 286

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 90/202 (44%), Gaps = 10/202 (4%)
Query: 33  FLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT 92
           +++  S D    + N  TG+ +  FE H   + S  +     +  SGS D T KLW+   
Sbjct: 69  WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 93  G-DEKHSFE-HKHIVRACAFS-EDTHLLLTGGFEKILRIFDLNRPDAPPR---EVGNSSG 146
               + +FE H+H V   AF+ +D     +G  ++ ++++ L +  + P      G   G
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ--STPNFTLTTGQERG 186
Query: 147 SIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGR--YITT 204
                 +   D+  + + +D   +++WD ++   V TLE      S  V        I+ 
Sbjct: 187 VNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISG 246
Query: 205 ADGSSVKFWDANHFGLVKGYNM 226
           ++  ++K W+++ + + K  N+
Sbjct: 247 SEDGTLKIWNSSTYKVEKTLNV 268

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 90/202 (44%), Gaps = 10/202 (4%)
Query: 33  FLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT 92
           +++  S D    + N  TG+ +  FE H   + S  +     +  SGS D T KLW+   
Sbjct: 69  WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 93  G-DEKHSFE-HKHIVRACAFS-EDTHLLLTGGFEKILRIFDLNRPDAPPR---EVGNSSG 146
               + +FE H+H V   AF+ +D     +G  ++ ++++ L +  + P      G   G
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ--STPNFTLTTGQERG 186
Query: 147 SIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGR--YITT 204
                 +   D+  + + +D   +++WD ++   V TLE      S  V        I+ 
Sbjct: 187 VNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISG 246
Query: 205 ADGSSVKFWDANHFGLVKGYNM 226
           ++  ++K W+++ + + K  N+
Sbjct: 247 SEDGTLKIWNSSTYKVEKTLNV 268

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 96/207 (46%), Gaps = 20/207 (9%)
Query: 33  FLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD--- 89
           +++  S D    + N  TG+ +  FE H   + S  +     +  SGS D T KLW+   
Sbjct: 69  WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 90  --ALTGDEKHSFE-HKHIVRACAFS-EDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSS 145
             AL    + +FE H+H V   AF+ +D     +G  ++ ++++ L +   P   +  ++
Sbjct: 129 NWAL----EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ-STPNFTL--TT 181
Query: 146 GSIRTVAWLH----SDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGR- 200
           G  R V ++      D+  + + +D   +++WD ++   V TLE      S  V      
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP 241
Query: 201 -YITTADGSSVKFWDANHFGLVKGYNM 226
             I+ ++  ++K W+++ + + K  N+
Sbjct: 242 IIISGSEDGTLKIWNSSTYKVEKTLNV 268

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/296 (19%), Positives = 114/296 (38%), Gaps = 69/296 (23%)
Query: 33  FLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT 92
           ++++ + D    + +     ++    GH G VW+    A+     SGS D T ++WD   
Sbjct: 134 YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIKK 192
Query: 93  GDEKHSFE-HKHIVRACAFSE--DTHLLLTGGFEKILRIFDLNR---------------- 133
           G   H FE H   VR     E  +   ++TG  +  L ++ L +                
Sbjct: 193 GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV 252
Query: 134 ---PDAPPREVGNSSG---SIRTVA----------------------------------- 152
              P+  P  VG   G   S+RTV+                                   
Sbjct: 253 FHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDR 312
Query: 153 -----WLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADG 207
                + H  +  +S+  D+  +R+WD  +G+++ TL+  + +       D   ++ A  
Sbjct: 313 IYSTIYDHERKRCISASMDTT-IRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAAD 371
Query: 208 SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
            S++ WDAN +     Y+   N  + +      NI ++G E+ + ++++  +G+ +
Sbjct: 372 GSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGSENQF-NIYNLRSGKLV 425

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 5/168 (2%)
Query: 56  TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHI-VRACAFSEDT 114
           + EGH+  V S  +      +AS S D   +LWD   G +  S +   +     AFS D+
Sbjct: 75  SLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS 134
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
             L TG     + IF +         +      I ++A+   D   L+S    G + ++D
Sbjct: 135 QYLATGTHVGKVNIFGV-ESGKKEYSLDTRGKFILSIAY-SPDGKYLASGAIDGIINIFD 192
Query: 175 ARSGKIVQTLETKS-PVTSAEVSRDGRYITTA-DGSSVKFWDANHFGL 220
             +GK++ TLE  + P+ S   S D + + TA D   +K +D  H  L
Sbjct: 193 IATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANL 240

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 96/207 (46%), Gaps = 20/207 (9%)
Query: 33  FLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD--- 89
           +++  S D    + N  TG+ +  FE H   + S  +     +  SGS D T KLW+   
Sbjct: 69  WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 90  --ALTGDEKHSFE-HKHIVRACAFS-EDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSS 145
             AL    + +FE H+H V   AF+ +D     +G  ++ ++++ L +   P   +  ++
Sbjct: 129 NWAL----EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS-TPNFTL--TT 181
Query: 146 GSIRTVAWLH----SDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGR- 200
           G  R V ++      D+  + + +D   +++WD ++   V TLE      S  V      
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP 241
Query: 201 -YITTADGSSVKFWDANHFGLVKGYNM 226
             I+ ++  ++K W+++ + + K  N+
Sbjct: 242 IIISGSEDGTLKIWNSSTYKVEKTLNV 268

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/296 (19%), Positives = 113/296 (38%), Gaps = 69/296 (23%)
Query: 33  FLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT 92
           ++++ + D    + +     ++    GH G VW+    A+     SGS D T ++WD   
Sbjct: 134 YVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIKK 192
Query: 93  GDEKHSFE-HKHIVRACAFSE--DTHLLLTGGFEKILRIFDLNR---------------- 133
           G   H FE H   VR     E  +   ++TG  +  L ++ L +                
Sbjct: 193 GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV 252
Query: 134 ---PDAPPREVGNSSG---SIRTVA----------------------------------- 152
              P+  P  VG   G   S+RTV+                                   
Sbjct: 253 FHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDR 312
Query: 153 -----WLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADG 207
                + H  +  +S+  D+  +R+WD  +G++  TL+  + +       D   ++ A  
Sbjct: 313 IYSTIYDHERKRCISASXDTT-IRIWDLENGELXYTLQGHTALVGLLRLSDKFLVSAAAD 371
Query: 208 SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
            S++ WDAN +     Y+   N  + +      NI ++G E+ + ++++  +G+ +
Sbjct: 372 GSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGSENQF-NIYNLRSGKLV 425

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 95/222 (42%), Gaps = 16/222 (7%)
Query: 56  TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHI-VRACAFSEDT 114
           T  GH   +++     ++    S S D    +WD+ T ++ H+   +   V  CA++   
Sbjct: 61  TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 120
Query: 115 HLLLTGGFEKILRIFDLNRPDAP---PREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR 171
           + +  GG + I  I++L   +      RE+   +G +    +L  +Q + SS   +    
Sbjct: 121 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT--CA 178
Query: 172 LWDARSGKIVQTLETKS-PVTSAEVSRDGR-YITTADGSSVKFWDANHFGLVK----GYN 225
           LWD  +G+   T    +  V S  ++ D R +++ A  +S K WD    G+ +    G+ 
Sbjct: 179 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE-GMCRQTFTGHE 237
Query: 226 MPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAITS 267
              N  +    P  GN F  G +D    +FD    +++   S
Sbjct: 238 SDIN--AICFFPN-GNAFATGSDDATCRLFDLRADQELMTYS 276

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/218 (22%), Positives = 92/218 (42%), Gaps = 8/218 (3%)
Query: 56  TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHI-VRACAFSEDT 114
           T  GH   +++     ++    S S D    +WD+ T ++ H+   +   V  CA++   
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 115 HLLLTGGFEKILRIFDLNRPDAP---PREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR 171
           + +  GG + I  I++L   +      RE+   +G +    +L  +Q + SS   +    
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCA-- 167
Query: 172 LWDARSGKIVQTLETKS-PVTSAEVSRDGR-YITTADGSSVKFWDANHFGLVKGYNMPCN 229
           LWD  +G+   T    +  V S  ++ D R +++ A  +S K WD       + +    +
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 230 TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAITS 267
             +A      GN F  G +D    +FD    +++   S
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS 265

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/218 (22%), Positives = 92/218 (42%), Gaps = 8/218 (3%)
Query: 56  TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHI-VRACAFSEDT 114
           T  GH   +++     ++    S S D    +WD+ T ++ H+   +   V  CA++   
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 115 HLLLTGGFEKILRIFDLNRPDAP---PREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR 171
           + +  GG + I  I++L   +      RE+   +G +    +L  +Q + SS   +    
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCA-- 167
Query: 172 LWDARSGKIVQTLETKS-PVTSAEVSRDGR-YITTADGSSVKFWDANHFGLVKGYNMPCN 229
           LWD  +G+   T    +  V S  ++ D R +++ A  +S K WD       + +    +
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 230 TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAITS 267
             +A      GN F  G +D    +FD    +++   S
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS 265

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 48/218 (22%), Positives = 92/218 (42%), Gaps = 8/218 (3%)
Query: 56  TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHI-VRACAFSEDT 114
           T  GH   +++     ++    S S D    +WD+ T ++ H+   +   V  CA++   
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 115 HLLLTGGFEKILRIFDLNRPDAP---PREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR 171
           + +  GG + I  I++L   +      RE+   +G +    +L  +Q + SS   +    
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT--CA 167
Query: 172 LWDARSGKIVQTLETKS-PVTSAEVSRDGR-YITTADGSSVKFWDANHFGLVKGYNMPCN 229
           LWD  +G+   T    +  V S  ++ D R +++ A  +S K WD       + +    +
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 230 TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAITS 267
             +A      GN F  G +D    +FD    +++   S
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS 265

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 95/222 (42%), Gaps = 16/222 (7%)
Query: 56  TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHI-VRACAFSEDT 114
           T  GH   +++     ++    S S D    +WD+ T ++ H+   +   V  CA++   
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 115 HLLLTGGFEKILRIFDLNRPDAP---PREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR 171
           + +  GG + I  I++L   +      RE+   +G +    +L  +Q + SS   +    
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT--CA 167
Query: 172 LWDARSGKIVQTLETKS-PVTSAEVSRDGR-YITTADGSSVKFWDANHFGLVK----GYN 225
           LWD  +G+   T    +  V S  ++ D R +++ A  +S K WD    G+ +    G+ 
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE-GMCRQTFTGHE 226
Query: 226 MPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAITS 267
              N  +    P  GN F  G +D    +FD    +++   S
Sbjct: 227 SDIN--AICFFPN-GNAFATGSDDATCRLFDLRADQELMTYS 265

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 74/181 (40%), Gaps = 22/181 (12%)
Query: 11  VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW--IGTFEGHKGAVWSCC 68
           V   HS+ V  + + P       L S+S D +  +      DW  +    GH+G VWS  
Sbjct: 148 VLQEHSQDVKHVIWHPSEA---LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSD 204
Query: 69  LD-ANALFS-ASGSADFTAKLWDALTGDEKHSFE----------HKHIVRACAFSEDTHL 116
            D    +F   SGS D T ++W  +  DE    E          HK  V   A+  +  L
Sbjct: 205 FDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-L 263
Query: 117 LLTGGFEKILRIF---DLNRPDAPPREVGNSSGSIRTVAWLHSD-QTILSSCTDSGGVRL 172
           + + G + +L ++   D        R + +    I  V WL  + +TIL++  D G V  
Sbjct: 264 IASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNF 323
Query: 173 W 173
           W
Sbjct: 324 W 324

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 74/167 (44%), Gaps = 7/167 (4%)
Query: 54  IGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHS-FEHKHIVRACAFSE 112
           IGT +GH   V      ++ L  ASG  D   ++WDA +   K +   H   V+A A+  
Sbjct: 210 IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCP 269
Query: 113 -DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWL-HSDQTILSSCTDSGGV 170
             ++LL TGG     +I   N          ++   + ++ W  HS + + +       +
Sbjct: 270 WQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNL 329
Query: 171 RLWDARSGKIVQTLET---KSPVTSAEVSRDGRYITT-ADGSSVKFW 213
            +W   S  + + ++     + V  + +S DGR ++T A   ++KFW
Sbjct: 330 SIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFW 376

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/220 (20%), Positives = 85/220 (38%), Gaps = 42/220 (19%)
Query: 34  LVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG 93
           +VS  +D++  + +  T +      GH G+V   CL  +     +GS+D T ++WD  TG
Sbjct: 146 IVSGLRDNTIKIWDKNTLECKRILTGHTGSV--LCLQYDERVIITGSSDSTVRVWDVNTG 203
Query: 94  DEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRP-DAPPR------------- 139
           +  ++  H H         +  +++T   ++ + ++D+  P D   R             
Sbjct: 204 EMLNTLIH-HCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV 262
Query: 140 ----------------EVGNSS---------GSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
                           +V N+S         G  R +A L     ++ S +    +RLWD
Sbjct: 263 DFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWD 322
Query: 175 ARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWD 214
              G  ++ LE    +       + R ++ A    +K WD
Sbjct: 323 IECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWD 362

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 63/127 (49%), Gaps = 10/127 (7%)
Query: 122 FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIV 181
           + K+  I +L  P A     G ++  +  +AW H   +I++   ++G +RLW+ ++G ++
Sbjct: 85  YWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGV-ENGELRLWN-KTGALL 142
Query: 182 QTLE-TKSPVTSAEVSRDGRYITTADGSSVK-FWDA------NHFGLVKGYNMPCNTESA 233
             L   ++P+ S + ++DG +I + D  +V   W+        HF L +      N E+ 
Sbjct: 143 NVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENH 202
Query: 234 SLEPKLG 240
           S +  LG
Sbjct: 203 SGDGSLG 209

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	268
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.98
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.98
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.96
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.95
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.94
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.94
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.94
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.94
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.93
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.93
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.93
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.92
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.92
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.92
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.92
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.91
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.91
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.89
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.89
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.89
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.89
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.88
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.88
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.87
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.87
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.87
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.87
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.86
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.86
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.85
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.85
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.84
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.84
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.84
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.83
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.83
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.82
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.82
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.8
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.79
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.79
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.78
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.78
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.78
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.77
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.76
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.76
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.75
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.75
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.75
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.75
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.75
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.74
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.72
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.71
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.71
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.7
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.7
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.68
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.68
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.67
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.67
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.66
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.66
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.64
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.63
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.63
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.62
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.6
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.59
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.58
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.58
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.56
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.54
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.54
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.54
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.53
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.52
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.51
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.51
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.48
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.45
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.44
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.44
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.43
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.43
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.42
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.41
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.41
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.36
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.33
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.33
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.33
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.31
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.3
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.28
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.25
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.23
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.22
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.21
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.17
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.16
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.16
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.15
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.15
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.13
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.11
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.1
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.09
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.07
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.05
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.02
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.99
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.99
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.98
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.95
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.94
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.93
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.93
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.93
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.93
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.9
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.87
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.86
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.83
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.77
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.77
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.77
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.66
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.66
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.65
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.58
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.58
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.58
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.47
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.46
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.46
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.42
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.42
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.41
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.36
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.36
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.31
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.25
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.24
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.24
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.21
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.18
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.15
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.14
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.13
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.12
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.12
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.06
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.06
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.03
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.01
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.95
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.93
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.93
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.89
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.89
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.87
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.86
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.85
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.84
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.83
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.77
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.75
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.72
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.62
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.5
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.49
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.47
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.42
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.27
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.08
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.01
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.99
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	96.97
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.88
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.64
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.27
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.24
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	95.93
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	95.79
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	95.74
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	95.63
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	95.62
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	95.6
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	95.48
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	95.33
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.13
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	95.1
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	95.02
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.98
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	94.88
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	94.56
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	94.1
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	93.48
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	93.25
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	92.75
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	92.66
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	92.08
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	91.59
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	91.12
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	90.53
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	89.72
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	89.69
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	89.61
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	89.53
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	89.35
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	88.96
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	88.64
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	88.01
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	87.99
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	87.25
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	87.05
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	85.15

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=3e-45  Score=305.12  Aligned_cols=257  Identities=19%  Similarity=0.228  Sum_probs=222.9

Q ss_pred             eeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcE
Q 024372            6 VAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTA   85 (268)
Q Consensus         6 ~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v   85 (268)
                      +.....+.+|++.|.+++|+|   +|++|++|+.|++|++||..+++.+..+.+|..+|.+++|+|++.++++|+.|++|
T Consensus         3 l~~~~~~~~h~~~V~~~~fsp---~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i   79 (304)
T 2ynn_A            3 LDIKKTFSNRSDRVKGIDFHP---TEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRI   79 (304)
T ss_dssp             CCCEEEEEEECSCEEEEEECS---SSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEE
T ss_pred             ceeEEeecCCCCceEEEEECC---CCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEE
Confidence            344556789999999999995   89999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEe
Q 024372           86 KLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC  164 (268)
Q Consensus        86 ~iw~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  164 (268)
                      ++||+.+++....+. |...|.+++|+|++++|++|+.|++|++||++.+......+..|...|.+++|+|.++.+++++
T Consensus        80 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sg  159 (304)
T 2ynn_A           80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG  159 (304)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEE
T ss_pred             EEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEE
Confidence            999999999887775 8899999999999999999999999999999765444455667888999999999777788888


Q ss_pred             eCCCeEEEEeCCCCceEEeec--CCCCEEEEEECC--CCcEEEE-eCCCeEEEEeCCCceeeeEEeCCCCc-eeeEEcCC
Q 024372          165 TDSGGVRLWDARSGKIVQTLE--TKSPVTSAEVSR--DGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNT-ESASLEPK  238 (268)
Q Consensus       165 ~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~s~--~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~~~-~~~~~~~~  238 (268)
                      +.|++|++||+++++....+.  +...+..+.++|  ++.++++ +.|+.|++||+++.+++..+..+... ..+.++| 
T Consensus       160 s~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p-  238 (304)
T 2ynn_A          160 CLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP-  238 (304)
T ss_dssp             ETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-
T ss_pred             eCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECC-
Confidence            999999999999887665553  335688899986  6677665 57899999999999999888876554 4555666 


Q ss_pred             CCCEEEeccCCCeEEEEECCCCcEEeec
Q 024372          239 LGNIFIAGGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       239 ~~~~~~~gs~d~~i~~wd~~~g~~~~~~  266 (268)
                      ++.+|++|+.|+.|++||+.+++.+..+
T Consensus       239 ~~~~l~s~s~Dg~i~iWd~~~~~~~~~~  266 (304)
T 2ynn_A          239 TLPIIISGSEDGTLKIWNSSTYKVEKTL  266 (304)
T ss_dssp             SSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             CCCEEEEEcCCCeEEEEECCCCceeeec
Confidence            6899999999999999999999887654

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=3.2e-42  Score=298.44  Aligned_cols=251  Identities=20%  Similarity=0.338  Sum_probs=218.8

Q ss_pred             EEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEe
Q 024372           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (268)
Q Consensus        10 ~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~   89 (268)
                      ..+.+|.++|++++|+|   ++.+|++|+.|++|++||..+++++.++.+|.+.|.+++|+|++.++++|+.|++|++||
T Consensus       102 ~~l~gh~~~V~~~~~~p---~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd  178 (410)
T 1vyh_C          102 YALSGHRSPVTRVIFHP---VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD  178 (410)
T ss_dssp             CEEECCSSCEEEEEECS---SSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEE
T ss_pred             EeecccCCcEEEEEEcC---CCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Confidence            45679999999999995   889999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCC
Q 024372           90 ALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG  168 (268)
Q Consensus        90 ~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~  168 (268)
                      +.++.+...+. |...|.+++|+|+++.|++|+.|+.|++||++++.. ...+..|...+.++.+++++. ++++++.|+
T Consensus       179 ~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~-~~~~~~h~~~v~~~~~~~~g~-~l~s~s~D~  256 (410)
T 1vyh_C          179 FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC-VKTFTGHREWVRMVRPNQDGT-LIASCSNDQ  256 (410)
T ss_dssp             TTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEECTTSS-EEEEEETTS
T ss_pred             CCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE-EEEEeCCCccEEEEEECCCCC-EEEEEcCCC
Confidence            99988877764 888999999999999999999999999999987643 345567888999999987664 666778889


Q ss_pred             eEEEEeCCCCceEEeecC-CCCEEEEEECCC--------------------CcEEEE-eCCCeEEEEeCCCceeeeEEeC
Q 024372          169 GVRLWDARSGKIVQTLET-KSPVTSAEVSRD--------------------GRYITT-ADGSSVKFWDANHFGLVKGYNM  226 (268)
Q Consensus       169 ~i~iwd~~~~~~~~~~~~-~~~v~~~~~s~~--------------------g~~l~~-~~~~~v~~wd~~~~~~~~~~~~  226 (268)
                      +|++||++++++...+.. ...+.+++|+|+                    |.++++ +.|+.|++||+++..++..+..
T Consensus       257 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~  336 (410)
T 1vyh_C          257 TVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG  336 (410)
T ss_dssp             CEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             eEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEEC
Confidence            999999999999888864 456999999996                    556655 5789999999999988888876


Q ss_pred             CCCc-eeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEeec
Q 024372          227 PCNT-ESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       227 ~~~~-~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~~  266 (268)
                      +... ..+.+++ ++++|++|+.|+.|++||+.+++.+..+
T Consensus       337 h~~~v~~v~~~~-~g~~l~s~s~D~~i~vwd~~~~~~~~~~  376 (410)
T 1vyh_C          337 HDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTL  376 (410)
T ss_dssp             CSSCEEEEEECS-SSSCEEEEETTTEEEEECCTTSCCCEEE
T ss_pred             CCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceEEEE
Confidence            6554 4566666 6999999999999999999988776543

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=5.3e-42  Score=290.55  Aligned_cols=245  Identities=18%  Similarity=0.173  Sum_probs=202.1

Q ss_pred             eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEE----EeeCccCcEEEEEecCCCcEEEEeeCCCcEEEE
Q 024372           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIG----TFEGHKGAVWSCCLDANALFSASGSADFTAKLW   88 (268)
Q Consensus        13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~----~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw   88 (268)
                      ..|..+|.+++|+|   ++ +|++|+.|++|+|||+.+++.+.    .+.+|++.|.+++|+|++.+|++|+.|++|++|
T Consensus        79 ~~~~~~v~~~~~s~---d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iw  154 (344)
T 4gqb_B           79 VQTEAGVADLTWVG---ER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVW  154 (344)
T ss_dssp             EEESSCEEEEEEET---TT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             eccCCCEEEEEEeC---CC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            46788999999996   64 68899999999999999987543    345899999999999999999999999999999


Q ss_pred             eCCCCCeeeeec-cCCeEEEEEECCCC-CEEEEeeCCCeEEEEECCCCCCCCeEe-cCCcccEEEEEEeCCCCcEEEEee
Q 024372           89 DALTGDEKHSFE-HKHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAPPREV-GNSSGSIRTVAWLHSDQTILSSCT  165 (268)
Q Consensus        89 ~~~~~~~~~~~~-~~~~v~~v~~~~~~-~~l~s~~~d~~i~~~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~  165 (268)
                      |+.+++++..+. |...|.+++|++++ .+|++|+.|+.|++||+++++...... ..+...+.+++|+|++..++++++
T Consensus       155 d~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~  234 (344)
T 4gqb_B          155 DLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGD  234 (344)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEE
T ss_pred             ECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEec
Confidence            999999888875 89999999999987 588999999999999998765332221 234557899999998888999999


Q ss_pred             CCCeEEEEeCCCCceEEeecC-CCCEEEEEECCCC-cEEEE-eCCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCE
Q 024372          166 DSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDG-RYITT-ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNI  242 (268)
Q Consensus       166 ~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~s~~g-~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (268)
                      .|++|+|||+++++++.++.. ...|.+++|+|++ ++|++ +.|+.|++||++..++++...+...+.+++|+|....+
T Consensus       235 ~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~l  314 (344)
T 4gqb_B          235 ENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSL  314 (344)
T ss_dssp             TTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTE
T ss_pred             cCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeE
Confidence            999999999999999998875 4569999999998 56654 67899999999988776544444456778888865568


Q ss_pred             EEeccCCCeEEEEECCCCc
Q 024372          243 FIAGGEDMWVHVFDFHTGE  261 (268)
Q Consensus       243 ~~~gs~d~~i~~wd~~~g~  261 (268)
                      |++||.|+.|++|++.+..
T Consensus       315 las~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          315 LTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             EEEEETTSCEEEEECCC--
T ss_pred             EEEEcCCCeEEEEECCCCC
Confidence            8899999999999997644

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.3e-41  Score=285.05  Aligned_cols=245  Identities=24%  Similarity=0.312  Sum_probs=211.3

Q ss_pred             EEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEe
Q 024372           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (268)
Q Consensus        10 ~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~   89 (268)
                      ..+.+|..+|.+++|+|   +|++|++|+.|++|++||+.+++.+.++.+|.+.|.+++|+|++.++++|+.|++|++||
T Consensus        59 ~~~~~h~~~v~~~~~s~---dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd  135 (319)
T 3frx_A           59 RSFKGHSHIVQDCTLTA---DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWT  135 (319)
T ss_dssp             EEEECCSSCEEEEEECT---TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             eEEeCCcccEEEEEECC---CCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence            45679999999999985   899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCeeeeeccCCeEEEEEECCC------CCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEE
Q 024372           90 ALTGDEKHSFEHKHIVRACAFSED------THLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS  163 (268)
Q Consensus        90 ~~~~~~~~~~~~~~~v~~v~~~~~------~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  163 (268)
                      +..........|...|.++.|+|.      +..+++++.|+.|++||++... ....+..|...+.+++|+|++. ++++
T Consensus       136 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~h~~~v~~~~~sp~g~-~l~s  213 (319)
T 3frx_A          136 IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ-IEADFIGHNSNINTLTASPDGT-LIAS  213 (319)
T ss_dssp             TTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE-EEEEECCCCSCEEEEEECTTSS-EEEE
T ss_pred             CCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch-hheeecCCCCcEEEEEEcCCCC-EEEE
Confidence            975544445568889999999985      4489999999999999997643 2344556888999999998765 5667


Q ss_pred             eeCCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEeCC---------CCceeeE
Q 024372          164 CTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMP---------CNTESAS  234 (268)
Q Consensus       164 ~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~~---------~~~~~~~  234 (268)
                      ++.|++|+|||+++++++.++..+.++.+++|+|++.+++++.+..+++|++.....+..+...         ....+++
T Consensus       214 ~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  293 (319)
T 3frx_A          214 AGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLA  293 (319)
T ss_dssp             EETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEE
T ss_pred             EeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEE
Confidence            7788999999999999999998888999999999999999888888999999887666555321         2244677


Q ss_pred             EcCCCCCEEEeccCCCeEEEEECCCC
Q 024372          235 LEPKLGNIFIAGGEDMWVHVFDFHTG  260 (268)
Q Consensus       235 ~~~~~~~~~~~gs~d~~i~~wd~~~g  260 (268)
                      ++| +|++|++|+.|+.|++||+.++
T Consensus       294 ~sp-dg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          294 WSA-DGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             ECT-TSSEEEEEETTSCEEEEEEEEC
T ss_pred             ECC-CCCEEEEeecCceEEEEEEeec
Confidence            777 7999999999999999999875

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.1e-41  Score=295.16  Aligned_cols=247  Identities=22%  Similarity=0.350  Sum_probs=215.7

Q ss_pred             eecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEE
Q 024372            7 AVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAK   86 (268)
Q Consensus         7 ~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~   86 (268)
                      .....+.+|.+.|.+++|+|   +|++|++|+.|++|++||..+++++.++.+|...|.+++|+|++.++++|+.|++|+
T Consensus       141 ~~~~~l~~h~~~V~~v~~~~---~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~  217 (410)
T 1vyh_C          141 DFERTLKGHTDSVQDISFDH---SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIK  217 (410)
T ss_dssp             CCCEEECCCSSCEEEEEECT---TSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred             cEEEEEeccCCcEEEEEEcC---CCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEE
Confidence            34556789999999999985   899999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCC--------
Q 024372           87 LWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSD--------  157 (268)
Q Consensus        87 iw~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~--------  157 (268)
                      +||+.++.+...+. |...|.++.++|+++++++|+.|+.|++||+.++.. ...+..|...+.+++|+|+.        
T Consensus       218 ~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~~~~~  296 (410)
T 1vyh_C          218 MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKEC-KAELREHRHVVECISWAPESSYSSISEA  296 (410)
T ss_dssp             EEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEEEEECCSCGGGGGGGC
T ss_pred             EEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCce-eeEecCCCceEEEEEEcCcccccchhhh
Confidence            99999999887774 788999999999999999999999999999976543 34556788899999998863        


Q ss_pred             -----------CcEEEEeeCCCeEEEEeCCCCceEEeecC-CCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEE
Q 024372          158 -----------QTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGY  224 (268)
Q Consensus       158 -----------~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~  224 (268)
                                 +.++++++.|+.|++||+++++++.++.. ...+.+++|+|+|++|++ +.|+.|++||+++.+++..+
T Consensus       297 ~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~  376 (410)
T 1vyh_C          297 TGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL  376 (410)
T ss_dssp             CSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE
T ss_pred             ccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEE
Confidence                       34677888899999999999999988875 456999999999988765 57899999999998888888


Q ss_pred             eCCCC-ceeeEEcCCCCCEEEeccCCCeEEEEECC
Q 024372          225 NMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (268)
Q Consensus       225 ~~~~~-~~~~~~~~~~~~~~~~gs~d~~i~~wd~~  258 (268)
                      ..+.. +..+.+++ ++.+|++||.|+.|++|+.+
T Consensus       377 ~~h~~~v~~l~~~~-~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          377 NAHEHFVTSLDFHK-TAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             ECCSSCEEEEEECS-SSSCEEEEETTSEEEEEC--
T ss_pred             cCCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEeCC
Confidence            76654 45666666 68999999999999999863

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.5e-40  Score=277.07  Aligned_cols=252  Identities=25%  Similarity=0.452  Sum_probs=217.8

Q ss_pred             EEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEe
Q 024372           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (268)
Q Consensus        10 ~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~   89 (268)
                      ..+.+|.++|++++|+|   +|++|++|+.|+++++|+..+++....+.+|...|.+++|+|++.++++++.|+.|++||
T Consensus        17 ~~~~gh~~~v~~~~~s~---~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd   93 (312)
T 4ery_A           17 FTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD   93 (312)
T ss_dssp             EEECCCSSCEEEEEECT---TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             EEEcccCCcEEEEEECC---CCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEE
Confidence            44579999999999985   899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCC
Q 024372           90 ALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG  168 (268)
Q Consensus        90 ~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~  168 (268)
                      +.+++....+. |...|.++.|+|+++.+++|+.|+.|++||+++++ ....+..|..++.+++|+|++. ++++++.|+
T Consensus        94 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~  171 (312)
T 4ery_A           94 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDG  171 (312)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSS-EEEEEETTS
T ss_pred             CCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE-EEEEecCCCCcEEEEEEcCCCC-EEEEEeCCC
Confidence            99998877775 78899999999999999999999999999997654 2345556788999999998765 566677889


Q ss_pred             eEEEEeCCCCceEEeec--CCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCCC---ceeeEEcCCCCCE
Q 024372          169 GVRLWDARSGKIVQTLE--TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCN---TESASLEPKLGNI  242 (268)
Q Consensus       169 ~i~iwd~~~~~~~~~~~--~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  242 (268)
                      .|++||+++++++..+.  ...++..++|+|+++++++ +.|+.|++||+++.+.+..+..+..   .....+.++++.+
T Consensus       172 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (312)
T 4ery_A          172 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW  251 (312)
T ss_dssp             CEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCE
T ss_pred             cEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcE
Confidence            99999999999887764  3456899999999998876 5689999999999988888865433   2233455557899


Q ss_pred             EEeccCCCeEEEEECCCCcEEeec
Q 024372          243 FIAGGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       243 ~~~gs~d~~i~~wd~~~g~~~~~~  266 (268)
                      +++|+.|+.|++||+.+++.+..+
T Consensus       252 l~sg~~dg~i~vwd~~~~~~~~~~  275 (312)
T 4ery_A          252 IVSGSEDNLVYIWNLQTKEIVQKL  275 (312)
T ss_dssp             EEECCTTSCEEEEETTTCCEEEEE
T ss_pred             EEEECCCCEEEEEECCCchhhhhh
Confidence            999999999999999999887654

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.8e-41  Score=289.57  Aligned_cols=252  Identities=22%  Similarity=0.347  Sum_probs=202.6

Q ss_pred             eeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcE
Q 024372            6 VAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTA   85 (268)
Q Consensus         6 ~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v   85 (268)
                      ......+.+|+++|++++|+|   +|++|++|+.|++|++||..+++.+..+.+|...|.+++|+|++.++++|+.|+.+
T Consensus        56 ~~~~~~l~gH~~~V~~~~~sp---~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v  132 (380)
T 3iz6_a           56 LVCCRTLQGHSGKVYSLDWTP---EKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSAC  132 (380)
T ss_dssp             CEEEEEECCCSSCEEEEEECT---TSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCC
T ss_pred             eEEeecccccccEEEEEEEcC---CCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcE
Confidence            344456789999999999985   89999999999999999999999988898888888888888877766666666666


Q ss_pred             EEEeC--------------------------------------------------CCCCeeeee------ccCCeEEEEE
Q 024372           86 KLWDA--------------------------------------------------LTGDEKHSF------EHKHIVRACA  109 (268)
Q Consensus        86 ~iw~~--------------------------------------------------~~~~~~~~~------~~~~~v~~v~  109 (268)
                      ++|++                                                  .+++....+      .|...|.+++
T Consensus       133 ~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~  212 (380)
T 3iz6_a          133 SIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLS  212 (380)
T ss_dssp             EEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEE
T ss_pred             EEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEE
Confidence            66654                                                  333333332      2556788999


Q ss_pred             ECC-CCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCC-
Q 024372          110 FSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-  187 (268)
Q Consensus       110 ~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-  187 (268)
                      |++ +++++++|+.|+.|++||++........+..|.+.|.+++|+|++. ++++++.|++|+|||+++++++..+..+ 
T Consensus       213 ~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~lwd~~~~~~~~~~~~~~  291 (380)
T 3iz6_a          213 INSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQ-RFGTGSDDGTCRLFDMRTGHQLQVYNREP  291 (380)
T ss_dssp             ECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSS-EEEEECSSSCEEEEETTTTEEEEEECCCC
T ss_pred             eecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCC-eEEEEcCCCeEEEEECCCCcEEEEecccc
Confidence            977 8899999999999999999755455667777889999999998765 5667788899999999999998877532 


Q ss_pred             -------CCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEe----CCC-CceeeEEcCCCCCEEEeccCCCeEEE
Q 024372          188 -------SPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYN----MPC-NTESASLEPKLGNIFIAGGEDMWVHV  254 (268)
Q Consensus       188 -------~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~gs~d~~i~~  254 (268)
                             ..+.+++|+|+|++++++ .|+.|++||+...+.+..+.    .+. .+..+.++| +|.+|++||.|+.|++
T Consensus       292 ~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~D~~i~i  370 (380)
T 3iz6_a          292 DRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSS-DGSALCTGSWDKNLKI  370 (380)
T ss_dssp             SSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECS-SSSEEEEECTTSCEEE
T ss_pred             cccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECC-CCCEEEEeeCCCCEEE
Confidence                   237899999999998775 68999999998877766552    233 355677777 7999999999999999


Q ss_pred             EECCCCcE
Q 024372          255 FDFHTGEQ  262 (268)
Q Consensus       255 wd~~~g~~  262 (268)
                      |++..+++
T Consensus       371 W~~~~~~~  378 (380)
T 3iz6_a          371 WAFSGHRK  378 (380)
T ss_dssp             EECCSSSS
T ss_pred             EecCCCcc
Confidence            99986654

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=9.8e-41  Score=280.12  Aligned_cols=251  Identities=22%  Similarity=0.293  Sum_probs=212.2

Q ss_pred             eecCCCeeeEEEecC-CCCCcEEEEEeCCCCeEEeeCCCCC--eEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEe
Q 024372           13 HGHSRPVVDLFYSPI-TPDGFFLVSASKDSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (268)
Q Consensus        13 ~~h~~~v~~~~f~~~-~~dg~~l~s~s~d~~i~iw~~~~~~--~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~   89 (268)
                      .+|.++|++++|+|. .+++.+|++|+.|++|++|+...++  +...+.+|...|.++++++++.++++++.|++|++||
T Consensus        29 ~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd  108 (321)
T 3ow8_A           29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWD  108 (321)
T ss_dssp             TSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred             ccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence            589999999999874 2467899999999999999988775  3557899999999999999999999999999999999


Q ss_pred             CCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCC
Q 024372           90 ALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG  168 (268)
Q Consensus        90 ~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~  168 (268)
                      +.+++....+. +...+.+++|+|+++.|++|+.|+.+++||++.+.. ......+...+.+++|+|++. ++++++.|+
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~-~~~~~~~~~~v~~~~~spdg~-~lasg~~dg  186 (321)
T 3ow8_A          109 LENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK-EYSLDTRGKFILSIAYSPDGK-YLASGAIDG  186 (321)
T ss_dssp             TTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSE-EEEEECSSSCEEEEEECTTSS-EEEEEETTS
T ss_pred             CCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCce-eEEecCCCceEEEEEECCCCC-EEEEEcCCC
Confidence            99998877765 566788999999999999999999999999986543 334445677899999998775 566677889


Q ss_pred             eEEEEeCCCCceEEeecC-CCCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeCCCC-ceeeEEcCCCCCEEEe
Q 024372          169 GVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCN-TESASLEPKLGNIFIA  245 (268)
Q Consensus       169 ~i~iwd~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  245 (268)
                      .|++||+++++.+.++.. ..++.+++|+|++++|+++ .|+.|++||++..+.+..+..+.. +..++++| ++.+|++
T Consensus       187 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp-~~~~l~s  265 (321)
T 3ow8_A          187 IINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCP-DDTHFVS  265 (321)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEE
T ss_pred             eEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECC-CCCEEEE
Confidence            999999999999998875 4579999999999988765 689999999999888887776554 45667777 6999999


Q ss_pred             ccCCCeEEEEECCCCcEEeec
Q 024372          246 GGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       246 gs~d~~i~~wd~~~g~~~~~~  266 (268)
                      |+.|+.|++||+.+++.+..+
T Consensus       266 ~s~D~~v~iwd~~~~~~~~~~  286 (321)
T 3ow8_A          266 SSSDKSVKVWDVGTRTCVHTF  286 (321)
T ss_dssp             EETTSCEEEEETTTTEEEEEE
T ss_pred             EeCCCcEEEEeCCCCEEEEEE
Confidence            999999999999999887764

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.1e-40  Score=279.79  Aligned_cols=243  Identities=20%  Similarity=0.321  Sum_probs=213.3

Q ss_pred             cEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEE
Q 024372            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLW   88 (268)
Q Consensus         9 ~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw   88 (268)
                      ...+.+|...|.+++|+|   ++.++++++.|++|++||..+++.+..+..|...+.+++|+|++.++++|+.|+.+++|
T Consensus        73 ~~~l~gh~~~v~~~~~~~---~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~  149 (321)
T 3ow8_A           73 QWSLEGHQLGVVSVDISH---TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIF  149 (321)
T ss_dssp             EEEECCCSSCEEEEEECS---SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEE
T ss_pred             eeeeccCCCCEEEEEECC---CCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEE
Confidence            345679999999999985   78899999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCC
Q 024372           89 DALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS  167 (268)
Q Consensus        89 ~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d  167 (268)
                      ++.++.....+. +...+.+++|+|++++|++|+.|+.|++||+++++ ....+..|..+|.+++|+|++. ++++++.|
T Consensus       150 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~spd~~-~l~s~s~d  227 (321)
T 3ow8_A          150 GVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGK-LLHTLEGHAMPIRSLTFSPDSQ-LLVTASDD  227 (321)
T ss_dssp             ETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCCCEEEECTTSC-EEEEECTT
T ss_pred             EcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCc-EEEEEcccCCceeEEEEcCCCC-EEEEEcCC
Confidence            999988877664 66789999999999999999999999999997654 3345567888999999998765 56677788


Q ss_pred             CeEEEEeCCCCceEEeecCC-CCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCC-CceeeEEcCCCCCEEE
Q 024372          168 GGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPC-NTESASLEPKLGNIFI  244 (268)
Q Consensus       168 ~~i~iwd~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  244 (268)
                      ++|+|||+++++.+.++..+ ..+.+++|+|++++|++ +.|+.|++||+++.+++..+..+. .+..+.+.+ ++++|+
T Consensus       228 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~-~g~~l~  306 (321)
T 3ow8_A          228 GYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNG-NGSKIV  306 (321)
T ss_dssp             SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEE
T ss_pred             CeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECC-CCCEEE
Confidence            99999999999998888754 56999999999998775 578999999999999988886554 455677776 699999


Q ss_pred             eccCCCeEEEEEC
Q 024372          245 AGGEDMWVHVFDF  257 (268)
Q Consensus       245 ~gs~d~~i~~wd~  257 (268)
                      +++.|+.|++||.
T Consensus       307 s~~~d~~i~vwd~  319 (321)
T 3ow8_A          307 SVGDDQEIHIYDC  319 (321)
T ss_dssp             EEETTCCEEEEEC
T ss_pred             EEeCCCeEEEEeC
Confidence            9999999999996

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.5e-40  Score=279.52  Aligned_cols=251  Identities=18%  Similarity=0.323  Sum_probs=214.5

Q ss_pred             cEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEE
Q 024372            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLW   88 (268)
Q Consensus         9 ~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw   88 (268)
                      ...+.+|.++|.+++|+|   ||++|++|+.|++|++||..+++.+..+..|...|.+++|+|++.++++|+.|+.+++|
T Consensus        48 ~~~l~gH~~~v~~~~~s~---d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw  124 (340)
T 1got_B           48 RRTLRGHLAKIYAMHWGT---DSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY  124 (340)
T ss_dssp             EEEECCCSSCEEEEEECT---TSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred             heeecCCCCceEEEEECC---CCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            345679999999999985   89999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCe----eee-eccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEE
Q 024372           89 DALTGDE----KHS-FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS  163 (268)
Q Consensus        89 ~~~~~~~----~~~-~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  163 (268)
                      ++.+...    ... ..|...|.++.|++++. +++++.|+.|++||++++. ....+..|.+.|.+++|+|++. ++++
T Consensus       125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~-~~~~~~~h~~~v~~~~~~~~~~-~l~s  201 (340)
T 1got_B          125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQ-QTTTFTGHTGDVMSLSLAPDTR-LFVS  201 (340)
T ss_dssp             ETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSS-EEEE
T ss_pred             ECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCc-EEEEEcCCCCceEEEEECCCCC-EEEE
Confidence            9987542    222 34888999999998875 8899999999999997654 3345567888999999998765 6667


Q ss_pred             eeCCCeEEEEeCCCCceEEeecC-CCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCC---CceeeEEcCC
Q 024372          164 CTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPC---NTESASLEPK  238 (268)
Q Consensus       164 ~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~---~~~~~~~~~~  238 (268)
                      ++.|+.|++||+++++++.++.. ...+.+++|+|+++++++ +.|+.|++||++....+..+..+.   .+.++.++| 
T Consensus       202 g~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-  280 (340)
T 1got_B          202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-  280 (340)
T ss_dssp             EETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECT-
T ss_pred             EeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECC-
Confidence            77889999999999999998875 456999999999998876 578999999999888777776433   355677777 


Q ss_pred             CCCEEEeccCCCeEEEEECCCCcEEeec
Q 024372          239 LGNIFIAGGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       239 ~~~~~~~gs~d~~i~~wd~~~g~~~~~~  266 (268)
                      ++++|++|+.|+.|++||+.+++.+..+
T Consensus       281 ~g~~l~~g~~d~~i~vwd~~~~~~~~~~  308 (340)
T 1got_B          281 SGRLLLAGYDDFNCNVWDALKADRAGVL  308 (340)
T ss_dssp             TSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             CCCEEEEECCCCeEEEEEcccCcEeeEe
Confidence            6999999999999999999988877653

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=5.6e-40  Score=279.04  Aligned_cols=253  Identities=20%  Similarity=0.270  Sum_probs=215.8

Q ss_pred             cEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEE
Q 024372            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLW   88 (268)
Q Consensus         9 ~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw   88 (268)
                      ...+.+|.++|++++|+|   +|++|++|+.|++|++||..+++....+..|...|.+++|+|++.++++|+.|+.+++|
T Consensus        57 ~~~l~gH~~~V~~~~~s~---d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~  133 (354)
T 2pbi_B           57 RRTLKGHGNKVLCMDWCK---DKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVY  133 (354)
T ss_dssp             EEEEECCSSCEEEEEECT---TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEE
T ss_pred             EEEecCCCCeEEEEEECC---CCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEE
Confidence            456779999999999985   89999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCC-------eeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCC-CCcE
Q 024372           89 DALTGD-------EKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHS-DQTI  160 (268)
Q Consensus        89 ~~~~~~-------~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~  160 (268)
                      ++....       ......|...|.+++|+|+++.|++++.|++|++||+++++. ...+..|...+.++++.|. ++.+
T Consensus       134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~-~~~~~~h~~~v~~~~~~~~~~g~~  212 (354)
T 2pbi_B          134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQL-LQSFHGHGADVLCLDLAPSETGNT  212 (354)
T ss_dssp             ECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEECCCSSCCE
T ss_pred             EEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeE-EEEEcCCCCCeEEEEEEeCCCCCE
Confidence            986432       122234888999999999999999999999999999987643 4455677889999999875 3467


Q ss_pred             EEEeeCCCeEEEEeCCCCceEEeecC-CCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCC---CceeeEE
Q 024372          161 LSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPC---NTESASL  235 (268)
Q Consensus       161 ~~~~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~---~~~~~~~  235 (268)
                      +++++.|++|++||+++++++..+.. ...+.+++|+|++.++++ +.|++|++||++..+.+..+....   ....+.+
T Consensus       213 l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~  292 (354)
T 2pbi_B          213 FVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDF  292 (354)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEE
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEE
Confidence            78888899999999999999998875 457999999999988876 578999999999887776665432   3345666


Q ss_pred             cCCCCCEEEeccCCCeEEEEECCCCcEEeec
Q 024372          236 EPKLGNIFIAGGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       236 ~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~~  266 (268)
                      ++ +++++++|+.|+.|++||+.+++.+..+
T Consensus       293 s~-~g~~l~~g~~d~~i~vwd~~~~~~~~~l  322 (354)
T 2pbi_B          293 SL-SGRLLFAGYNDYTINVWDVLKGSRVSIL  322 (354)
T ss_dssp             CT-TSSEEEEEETTSCEEEEETTTCSEEEEE
T ss_pred             eC-CCCEEEEEECCCcEEEEECCCCceEEEE
Confidence            66 6999999999999999999999877653

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.2e-40  Score=275.70  Aligned_cols=250  Identities=19%  Similarity=0.306  Sum_probs=207.9

Q ss_pred             eecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEE
Q 024372            7 AVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAK   86 (268)
Q Consensus         7 ~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~   86 (268)
                      .....+.+|..+|.+++|+|   ++++|++|+.|++|++||..+++.+..+.+|.+.|.+++|+|++.++++|+.|++|+
T Consensus        46 ~~~~~~~~~~~~v~~~~~~~---~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~  122 (304)
T 2ynn_A           46 VEVRSIQVTETPVRAGKFIA---RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK  122 (304)
T ss_dssp             EEEEEEECCSSCEEEEEEEG---GGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEE
T ss_pred             ceeEEeeccCCcEEEEEEeC---CCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEE
Confidence            34455678999999999996   899999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCe-eeee-ccCCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCC-CCcEEE
Q 024372           87 LWDALTGDE-KHSF-EHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHS-DQTILS  162 (268)
Q Consensus        87 iw~~~~~~~-~~~~-~~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~  162 (268)
                      +||+.++.. ...+ .|...|.+++|+| ++..|++|+.|+.|++||++...........+...+..+.+.+. ++.+++
T Consensus       123 lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~  202 (304)
T 2ynn_A          123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI  202 (304)
T ss_dssp             EEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEE
T ss_pred             EEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEE
Confidence            999987744 3334 4888999999999 67899999999999999997665444445566678899998863 445777


Q ss_pred             EeeCCCeEEEEeCCCCceEEeecCC-CCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCCC-ceeeEEcCCC
Q 024372          163 SCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCN-TESASLEPKL  239 (268)
Q Consensus       163 ~~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~  239 (268)
                      +++.|++|++||+++++++.++..+ ..+.+++|+|++.+|++ +.|+.|++||++++++++.+..+.. ...++++|+.
T Consensus       203 s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (304)
T 2ynn_A          203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTG  282 (304)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTC
T ss_pred             EEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCC
Confidence            8888999999999999999998754 56999999999988776 5789999999999999988876544 4566777754


Q ss_pred             CC-EEEeccCCCeEEEEECCCC
Q 024372          240 GN-IFIAGGEDMWVHVFDFHTG  260 (268)
Q Consensus       240 ~~-~~~~gs~d~~i~~wd~~~g  260 (268)
                      +. ++++|+.|+ +.+|++.+.
T Consensus       283 ~~~~~asg~~~g-~~~~~~~~~  303 (304)
T 2ynn_A          283 RKNYIASGFDNG-FTVLSLGND  303 (304)
T ss_dssp             GGGCEEEEETTE-EEEEECC--
T ss_pred             CceEEEEecCCc-eEEEEeccC
Confidence            44 466666555 778887653

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=3.2e-40  Score=276.65  Aligned_cols=251  Identities=20%  Similarity=0.291  Sum_probs=212.9

Q ss_pred             ecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC-----CCeEEEeeCccCcEEEEEecCCCcEEEEeeCC
Q 024372            8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-----GDWIGTFEGHKGAVWSCCLDANALFSASGSAD   82 (268)
Q Consensus         8 ~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~-----~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D   82 (268)
                      ....+.+|+++|++++|+|  .++++|++|+.|++|++|+...     +..+..+.+|...|.+++|+|++.++++|+.|
T Consensus         9 l~~~l~gH~~~V~~l~~~~--~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D   86 (319)
T 3frx_A            9 LRGTLEGHNGWVTSLATSA--GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWD   86 (319)
T ss_dssp             EEEEECCCSSCEEEEEECS--SCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEEEccccceEEEEEccC--CCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCC
Confidence            3345679999999999986  2457999999999999998764     34577899999999999999999999999999


Q ss_pred             CcEEEEeCCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCC----
Q 024372           83 FTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSD----  157 (268)
Q Consensus        83 ~~v~iw~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~----  157 (268)
                      ++|++||+.+++....+. |...|.+++|+|+++++++|+.|++|++||++..  .......|...+.++.+.|..    
T Consensus        87 ~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~  164 (319)
T 3frx_A           87 KTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADD  164 (319)
T ss_dssp             SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC--EEEEECCCSSCEEEEEECCC-----
T ss_pred             CEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--eEEEEeccCCcEEEEEEccCCCCCC
Confidence            999999999998877764 8899999999999999999999999999998632  334555778899999998753    


Q ss_pred             -CcEEEEeeCCCeEEEEeCCCCceEEeec-CCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCCCceeeE
Q 024372          158 -QTILSSCTDSGGVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNTESAS  234 (268)
Q Consensus       158 -~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~~~~~~~  234 (268)
                       ..++++++.|+.|++||+++++....+. +..++.+++|+|+|++|++ +.|+.|++||++..+.+..+..+.....++
T Consensus       165 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~  244 (319)
T 3frx_A          165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLA  244 (319)
T ss_dssp             -CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEE
T ss_pred             CccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEE
Confidence             3467788889999999999999888776 4567999999999998876 578999999999999888888777777888


Q ss_pred             EcCCCCCEEEeccCCCeEEEEECCCCcEEe
Q 024372          235 LEPKLGNIFIAGGEDMWVHVFDFHTGEQIA  264 (268)
Q Consensus       235 ~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~  264 (268)
                      ++| ++.++++++.+ .+++|++..+..+.
T Consensus       245 ~sp-~~~~la~~~~~-~i~v~~~~~~~~~~  272 (319)
T 3frx_A          245 FSP-NRYWLAAATAT-GIKVFSLDPQYLVD  272 (319)
T ss_dssp             ECS-SSSEEEEEETT-EEEEEEETTEEEEE
T ss_pred             EcC-CCCEEEEEcCC-CcEEEEeCcCeeee
Confidence            887 58888877655 49999987766544

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=4.4e-40  Score=278.29  Aligned_cols=245  Identities=18%  Similarity=0.250  Sum_probs=202.2

Q ss_pred             EEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEe
Q 024372           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (268)
Q Consensus        10 ~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~   89 (268)
                      ..+.+|..+|.+++|+|   ++.+|++|+.|++|++||+.+++.+.++.+|.+.|.+++|+|++.++++++.|++|++||
T Consensus        70 ~~l~~h~~~V~~~~~~~---~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd  146 (343)
T 2xzm_R           70 KALTGHNHFVSDLALSQ---ENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWN  146 (343)
T ss_dssp             EEECCCSSCEEEEEECS---STTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEE
T ss_pred             chhccCCCceEEEEECC---CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEe
Confidence            44679999999999985   889999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCeeeee---ccCCeEEEEEECCCC----------CEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCC
Q 024372           90 ALTGDEKHSF---EHKHIVRACAFSEDT----------HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHS  156 (268)
Q Consensus        90 ~~~~~~~~~~---~~~~~v~~v~~~~~~----------~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~  156 (268)
                      +.........   .|...|.+++|+|++          .++++++.|+.|++||...  .....+..|.+.|.+++|+|+
T Consensus       147 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~h~~~v~~~~~s~~  224 (343)
T 2xzm_R          147 ILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF--QIRYTFKAHESNVNHLSISPN  224 (343)
T ss_dssp             SSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT--EEEEEEECCSSCEEEEEECTT
T ss_pred             ccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC--ceeEEEcCccccceEEEECCC
Confidence            9743332222   477789999999986          7899999999999999532  223345567889999999987


Q ss_pred             CCcEEEEeeCCCeEEEEeCC-CCceEEeecCCCCEEEEEECCCCcEEEEeCCCeEEEEeCCCceeee--EEe--------
Q 024372          157 DQTILSSCTDSGGVRLWDAR-SGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVK--GYN--------  225 (268)
Q Consensus       157 ~~~~~~~~~~d~~i~iwd~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~--~~~--------  225 (268)
                      +. ++++++.|+.|+|||++ .......+.....+.+++|+|++.+++++.|+.|++||+.+.....  .+.        
T Consensus       225 g~-~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~  303 (343)
T 2xzm_R          225 GK-YIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAE  303 (343)
T ss_dssp             SS-EEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBT
T ss_pred             CC-EEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhh
Confidence            75 56677788999999995 4455566656667999999999999998888999999997765443  222        


Q ss_pred             ----CCCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCc
Q 024372          226 ----MPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGE  261 (268)
Q Consensus       226 ----~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~  261 (268)
                          ......+++++| ++++|++|+.|+.|++|++.+|+
T Consensus       304 ~~~~~~~~v~~~~~sp-~g~~l~sg~~Dg~v~~w~~~~g~  342 (343)
T 2xzm_R          304 GQKGKNPQCTSLAWNA-LGKKLFAGFTDGVIRTFSFETSA  342 (343)
T ss_dssp             TBCCSCCCEEEEEECS-SSCCEEEEETTSEEEEEEEEEEE
T ss_pred             hhcCCCCceEEEEECC-CCCeEEEecCCceEEEEEEEccC
Confidence                112245677777 69999999999999999998765

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=5.3e-40  Score=272.53  Aligned_cols=244  Identities=18%  Similarity=0.261  Sum_probs=198.0

Q ss_pred             EeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC--CCeEEEeeCccCcEEEEEecCC--CcEEEEeeCCCcEE
Q 024372           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET--GDWIGTFEGHKGAVWSCCLDAN--ALFSASGSADFTAK   86 (268)
Q Consensus        11 ~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~--~~~~~~~~~h~~~V~~~~~~~~--~~~l~s~s~D~~v~   86 (268)
                      .+.+|.++|++++|+|   +|++||+|+.|++|++|+...  ++++.++.+|+++|.+++|+++  +.+|+||+.|++|+
T Consensus         4 ~~~~h~~~V~~~~~s~---~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~   80 (297)
T 2pm7_B            4 IANAHNEMIHDAVMDY---YGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVM   80 (297)
T ss_dssp             ECCSCSSCEEEEEECT---TSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEE
T ss_pred             eccCCcCceEEEEECC---CCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEE
Confidence            4579999999999985   899999999999999999874  4678899999999999999863  78999999999999


Q ss_pred             EEeCCCCC--eeeee-ccCCeEEEEEECCC--CCEEEEeeCCCeEEEEECCCCCC-CCeEecCCcccEEEEEEeCCC---
Q 024372           87 LWDALTGD--EKHSF-EHKHIVRACAFSED--THLLLTGGFEKILRIFDLNRPDA-PPREVGNSSGSIRTVAWLHSD---  157 (268)
Q Consensus        87 iw~~~~~~--~~~~~-~~~~~v~~v~~~~~--~~~l~s~~~d~~i~~~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~---  157 (268)
                      +||+.++.  ....+ .|...|.+++|+|+  +++|++++.|+.|++||++.... .......|...+.+++|+|..   
T Consensus        81 iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~  160 (297)
T 2pm7_B           81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE  160 (297)
T ss_dssp             EEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC---
T ss_pred             EEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccc
Confidence            99998764  33333 48889999999997  88999999999999999976532 234556788899999999863   


Q ss_pred             ---------CcEEEEeeCCCeEEEEeCCCCc----eEEeecC-CCCEEEEEECCCC---cEEEE-eCCCeEEEEeCCCce
Q 024372          158 ---------QTILSSCTDSGGVRLWDARSGK----IVQTLET-KSPVTSAEVSRDG---RYITT-ADGSSVKFWDANHFG  219 (268)
Q Consensus       158 ---------~~~~~~~~~d~~i~iwd~~~~~----~~~~~~~-~~~v~~~~~s~~g---~~l~~-~~~~~v~~wd~~~~~  219 (268)
                               ..++++++.|++|+|||+++++    ...++.. ...|.+++|+|++   .+|++ +.|++|++||++...
T Consensus       161 ~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~  240 (297)
T 2pm7_B          161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQ  240 (297)
T ss_dssp             ---------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred             cccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCC
Confidence                     3578888889999999998876    4556664 4679999999985   66665 578999999987632


Q ss_pred             ---eeeEE---eCCCCceeeEEcCCCCCEEEeccCCCeEEEEECC
Q 024372          220 ---LVKGY---NMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (268)
Q Consensus       220 ---~~~~~---~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~  258 (268)
                         ....+   .+......++++| ++++|++|+.|+.|++|+..
T Consensus       241 ~~~~~~~~~~~~~~~~v~~~~~s~-~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          241 GPWKKTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             SCCEEEESSSSCCSSCEEEEEECS-SSCCEEEEETTSCEEEEEEC
T ss_pred             CccceeeeecccCCCcEEEEEECC-CCCEEEEEcCCCcEEEEEEC
Confidence               11122   1223455677777 69999999999999999976

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=3.6e-40  Score=280.57  Aligned_cols=244  Identities=17%  Similarity=0.218  Sum_probs=201.3

Q ss_pred             eeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEE----EeeCccCcEEEEEecCCCcEEEEeeCCCcEEE
Q 024372           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIG----TFEGHKGAVWSCCLDANALFSASGSADFTAKL   87 (268)
Q Consensus        12 ~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~----~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~i   87 (268)
                      ..+|...|.+++|+|   ++. +++++.|++|++||+.+++...    ...+|.+.|.+++|+|++.+|++|+.|++|++
T Consensus        90 ~~~~~~~V~~~~~s~---d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~i  165 (357)
T 4g56_B           90 GVQTEAGVTDVAWVS---EKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKV  165 (357)
T ss_dssp             EEECSSCEEEEEEET---TTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEE
T ss_pred             cCCCCCCEEEEEEcC---CCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence            357999999999996   665 5578899999999999886442    34589999999999999999999999999999


Q ss_pred             EeCCCCCeeeeec-cCCeEEEEEECCCCC-EEEEeeCCCeEEEEECCCCCCCCe-EecCCcccEEEEEEeCCCCcEEEEe
Q 024372           88 WDALTGDEKHSFE-HKHIVRACAFSEDTH-LLLTGGFEKILRIFDLNRPDAPPR-EVGNSSGSIRTVAWLHSDQTILSSC  164 (268)
Q Consensus        88 w~~~~~~~~~~~~-~~~~v~~v~~~~~~~-~l~s~~~d~~i~~~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~  164 (268)
                      ||+.+++....+. |...|.+++|++++. ++++++.|+.|++||+++++.... ....+...+.+++|+|+++.+++++
T Consensus       166 wd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g  245 (357)
T 4g56_B          166 WDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACG  245 (357)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEE
T ss_pred             EECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEe
Confidence            9999998888775 788999999999874 789999999999999987654332 2334667899999999988889899


Q ss_pred             eCCCeEEEEeCCCCceEEeecC-CCCEEEEEECCCC-cEEEE-eCCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCC
Q 024372          165 TDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDG-RYITT-ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGN  241 (268)
Q Consensus       165 ~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~s~~g-~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (268)
                      +.|+.|++||++++++++++.. ...+.+++|+|++ ++|++ +.|+.|++||++..++++.+.+...+..++|+|.++.
T Consensus       246 ~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~  325 (357)
T 4g56_B          246 DETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHS  325 (357)
T ss_dssp             ESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTT
T ss_pred             ecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCC
Confidence            9999999999999999988875 4579999999997 56654 5789999999999888877665556778888886799


Q ss_pred             EEEeccCCCeEEEEECCC
Q 024372          242 IFIAGGEDMWVHVFDFHT  259 (268)
Q Consensus       242 ~~~~gs~d~~i~~wd~~~  259 (268)
                      +|++||.|+.|++||+.+
T Consensus       326 ~l~s~s~Dg~v~iW~~~~  343 (357)
T 4g56_B          326 KFTTVGWDHKVLHHHLPS  343 (357)
T ss_dssp             EEEEEETTSCEEEEECC-
T ss_pred             EEEEEcCCCeEEEEECCC
Confidence            999999999999999864

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=5.2e-39  Score=271.48  Aligned_cols=243  Identities=20%  Similarity=0.308  Sum_probs=208.1

Q ss_pred             eecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCC----CeEEEeeCccCcEEEEEecCCCcEEEEeeCC
Q 024372            7 AVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG----DWIGTFEGHKGAVWSCCLDANALFSASGSAD   82 (268)
Q Consensus         7 ~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~----~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D   82 (268)
                      .....+..|...|.+++|+|   +|++|++|+.|+.+++|+..++    +....+.+|.+.|.++.|++++. +++++.|
T Consensus        88 ~~~~~~~~~~~~v~~~~~s~---~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d  163 (340)
T 1got_B           88 NKVHAIPLRSSWVMTCAYAP---SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGD  163 (340)
T ss_dssp             CEEEEEECSSSCEEEEEECT---TSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETT
T ss_pred             CcceEeecCCccEEEEEECC---CCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECC
Confidence            34455678999999999985   8999999999999999999876    35677899999999999998876 7899999


Q ss_pred             CcEEEEeCCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEE
Q 024372           83 FTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTIL  161 (268)
Q Consensus        83 ~~v~iw~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  161 (268)
                      ++|++||+.++.....+. |...|.+++|+|+++++++|+.|+.|++||++++. ....+..|...|.+++|+|++. ++
T Consensus       164 ~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~-~~~~~~~h~~~v~~v~~~p~~~-~l  241 (340)
T 1got_B          164 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM-CRQTFTGHESDINAICFFPNGN-AF  241 (340)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS-EEEEECCCSSCEEEEEECTTSS-EE
T ss_pred             CcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCe-eEEEEcCCcCCEEEEEEcCCCC-EE
Confidence            999999999998887775 88899999999999999999999999999997654 3345567888999999998765 56


Q ss_pred             EEeeCCCeEEEEeCCCCceEEeecCC---CCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeCCCC-ceeeEEc
Q 024372          162 SSCTDSGGVRLWDARSGKIVQTLETK---SPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCN-TESASLE  236 (268)
Q Consensus       162 ~~~~~d~~i~iwd~~~~~~~~~~~~~---~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~~~-~~~~~~~  236 (268)
                      ++++.|++|++||+++++.+..+.+.   ..+.+++|+|+|++++++ .|+.|++||+.....+..+..+.. +..+.++
T Consensus       242 ~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s  321 (340)
T 1got_B          242 ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT  321 (340)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred             EEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEc
Confidence            67778899999999999888877643   369999999999998764 689999999998888888876554 4456666


Q ss_pred             CCCCCEEEeccCCCeEEEEE
Q 024372          237 PKLGNIFIAGGEDMWVHVFD  256 (268)
Q Consensus       237 ~~~~~~~~~gs~d~~i~~wd  256 (268)
                      + ++.+|++||.|+.|++||
T Consensus       322 ~-dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          322 D-DGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             T-TSSCEEEEETTSCEEEEC
T ss_pred             C-CCCEEEEEcCCccEEecC
Confidence            6 699999999999999997

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.3e-39  Score=275.92  Aligned_cols=245  Identities=16%  Similarity=0.174  Sum_probs=198.7

Q ss_pred             ecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC-----------CCeEEEeeCccCcEEEEEecCCCcEEEEeeCC
Q 024372           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-----------GDWIGTFEGHKGAVWSCCLDANALFSASGSAD   82 (268)
Q Consensus        14 ~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~-----------~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D   82 (268)
                      .|...|.+++|+|   ||++|++++ |+++++||...           .........|+..|.+++|+|++ .+++|+.|
T Consensus        28 ~~~~~v~~~~fs~---dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~d  102 (344)
T 4gqb_B           28 CMERQLEAARYRS---DGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDS  102 (344)
T ss_dssp             SCCSEEEEEEECT---TSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETT
T ss_pred             cccCCEEEEEECC---CCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECC
Confidence            5778899999985   999999887 88999997321           11111223467889999999986 56799999


Q ss_pred             CcEEEEeCCCCCeeeee-----ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCC
Q 024372           83 FTAKLWDALTGDEKHSF-----EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSD  157 (268)
Q Consensus        83 ~~v~iw~~~~~~~~~~~-----~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~  157 (268)
                      |+|+|||+.+++.....     .|...|++++|+|++++|++|+.|++|++||+++++ ....+..|.+.|.+++|++++
T Consensus       103 g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~-~~~~~~~h~~~V~~~~~~~~~  181 (344)
T 4gqb_B          103 GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQV-VLSSYRAHAAQVTCVAASPHK  181 (344)
T ss_dssp             SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECSSC
T ss_pred             CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc-EEEEEcCcCCceEEEEecCCC
Confidence            99999999988764433     488899999999999999999999999999998754 345566788999999999998


Q ss_pred             CcEEEEeeCCCeEEEEeCCCCceEEeecC---CCCEEEEEECCC-CcEEEE-eCCCeEEEEeCCCceeeeEEeCCCC-ce
Q 024372          158 QTILSSCTDSGGVRLWDARSGKIVQTLET---KSPVTSAEVSRD-GRYITT-ADGSSVKFWDANHFGLVKGYNMPCN-TE  231 (268)
Q Consensus       158 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~---~~~v~~~~~s~~-g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~~-~~  231 (268)
                      ..++++++.|++|+|||++++++...+..   ...+.+++|+|+ ++++++ +.|+.|++||+++.+++..+..+.. +.
T Consensus       182 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~  261 (344)
T 4gqb_B          182 DSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVT  261 (344)
T ss_dssp             TTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEE
T ss_pred             CCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEE
Confidence            88888999999999999999999887753   345899999996 466665 5789999999999998888887654 56


Q ss_pred             eeEEcCCCCCEEEeccCCCeEEEEECCCCcEEe
Q 024372          232 SASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIA  264 (268)
Q Consensus       232 ~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~  264 (268)
                      .++++|+..++|++||.|+.|++||+.+++.+.
T Consensus       262 ~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~  294 (344)
T 4gqb_B          262 GLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR  294 (344)
T ss_dssp             EEEECSSSSCCEEEEETTSCEEEECTTCCEEEE
T ss_pred             EEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE
Confidence            677777544789999999999999999888654

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.3e-38  Score=269.22  Aligned_cols=253  Identities=23%  Similarity=0.308  Sum_probs=202.1

Q ss_pred             eecEEeeecCCCeeeEEEec--CC-CCCcEEEEEeCCCCeEEeeCCCC-------CeEEEeeCccCcEEEEEecCCCcEE
Q 024372            7 AVPLVCHGHSRPVVDLFYSP--IT-PDGFFLVSASKDSSPMLRNGETG-------DWIGTFEGHKGAVWSCCLDANALFS   76 (268)
Q Consensus         7 ~~~~~~~~h~~~v~~~~f~~--~~-~dg~~l~s~s~d~~i~iw~~~~~-------~~~~~~~~h~~~V~~~~~~~~~~~l   76 (268)
                      .....+.||+++|++++|.+  .+ ++|++|++|+.|++|++|+..++       .....+.+|...|.+++|+|++.++
T Consensus        12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l   91 (343)
T 2xzm_R           12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA   91 (343)
T ss_dssp             EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEE
T ss_pred             eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEE
Confidence            34456789999999999921  11 48999999999999999998753       4567889999999999999999999


Q ss_pred             EEeeCCCcEEEEeCCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCe--EecCCcccEEEEEE
Q 024372           77 ASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR--EVGNSSGSIRTVAW  153 (268)
Q Consensus        77 ~s~s~D~~v~iw~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~--~~~~~~~~v~~~~~  153 (268)
                      ++|+.|++|++||+.++.....+. |...|.+++|+|+++.|++++.|+.|++||+... ....  ....|...+.+++|
T Consensus        92 ~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~  170 (343)
T 2xzm_R           92 ISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVRY  170 (343)
T ss_dssp             EEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEEE
T ss_pred             EEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeeee
Confidence            999999999999999998877764 8899999999999999999999999999998632 1111  11256778999999


Q ss_pred             eCCCC---------cEEEEeeCCCeEEEEeCCCCceEEeec-CCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCC-ceee
Q 024372          154 LHSDQ---------TILSSCTDSGGVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANH-FGLV  221 (268)
Q Consensus       154 ~~~~~---------~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~-~~~~  221 (268)
                      +|.+.         .++++++.|+.|++||. .++....+. +...+.+++|+|+|++|++ +.|+.|++||++. ....
T Consensus       171 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~  249 (343)
T 2xzm_R          171 SPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQ  249 (343)
T ss_dssp             CCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCS
T ss_pred             ccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccc
Confidence            98762         46777888899999994 456666665 4567999999999998876 4689999999954 3444


Q ss_pred             eEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEE
Q 024372          222 KGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (268)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~  263 (268)
                      ..+.....+..++++| ++.+++ ++.|+.|++||+.+++.+
T Consensus       250 ~~~~~~~~v~~v~~sp-~~~~la-~~~d~~v~iw~~~~~~~~  289 (343)
T 2xzm_R          250 REFDAGSTINQIAFNP-KLQWVA-VGTDQGVKIFNLMTQSKA  289 (343)
T ss_dssp             EEEECSSCEEEEEECS-SSCEEE-EEESSCEEEEESSSCCSC
T ss_pred             eeecCCCcEEEEEECC-CCCEEE-EECCCCEEEEEeCCCCCC
Confidence            5554555567778877 577665 556778999999877654

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=3e-38  Score=271.91  Aligned_cols=247  Identities=20%  Similarity=0.354  Sum_probs=202.0

Q ss_pred             eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccC------------------cEEEEEecCCCc
Q 024372           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG------------------AVWSCCLDANAL   74 (268)
Q Consensus        13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~------------------~V~~~~~~~~~~   74 (268)
                      .+|.+.|++++|+|   ||++||+|+ |+++++|+..+++.+..+..|..                  .|.+++|+|++.
T Consensus        61 ~~h~~~V~~v~fsp---dg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~  136 (393)
T 1erj_A           61 LDHTSVVCCVKFSN---DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK  136 (393)
T ss_dssp             EECSSCCCEEEECT---TSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSS
T ss_pred             cCCCCEEEEEEECC---CCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCC
Confidence            37999999999985   999999976 78999999999999988876643                  389999999999


Q ss_pred             EEEEeeCCCcEEEEeCCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEE
Q 024372           75 FSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAW  153 (268)
Q Consensus        75 ~l~s~s~D~~v~iw~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~  153 (268)
                      ++++|+.|++|++||+.+++....+. |...|.+++|+|+++.|++++.|++|++||+++++.. ... .+...+.++++
T Consensus       137 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~-~~~-~~~~~v~~~~~  214 (393)
T 1erj_A          137 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCS-LTL-SIEDGVTTVAV  214 (393)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE-EEE-ECSSCEEEEEE
T ss_pred             EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeE-EEE-EcCCCcEEEEE
Confidence            99999999999999999988877764 8889999999999999999999999999999765432 222 34567899999


Q ss_pred             eCCCCcEEEEeeCCCeEEEEeCCCCceEEeec--------CCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCce-----
Q 024372          154 LHSDQTILSSCTDSGGVRLWDARSGKIVQTLE--------TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFG-----  219 (268)
Q Consensus       154 ~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~--------~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~-----  219 (268)
                      +|.++.++++++.|+.|++||+++++.+..+.        +...+.+++|+|+|+++++ +.|+.|++||++...     
T Consensus       215 ~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~  294 (393)
T 1erj_A          215 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDS  294 (393)
T ss_dssp             CSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------
T ss_pred             ECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccc
Confidence            98667778888899999999999998887662        3457999999999998876 468999999997532     


Q ss_pred             -------eeeEEeCCCC-ceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEeec
Q 024372          220 -------LVKGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       220 -------~~~~~~~~~~-~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~~  266 (268)
                             +...+..+.. +..+++.+ ++.+|++|+.|+.|++||.++|+.+..+
T Consensus       295 ~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~iwd~~~~~~~~~l  348 (393)
T 1erj_A          295 KTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLML  348 (393)
T ss_dssp             ------CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             cCCCCCcceEEEecccCcEEEEEECC-CCCEEEEEeCCCeEEEEECCCCeEEEEE
Confidence                   2334444433 44566666 6899999999999999999999887653

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.3e-39  Score=269.22  Aligned_cols=243  Identities=16%  Similarity=0.243  Sum_probs=187.5

Q ss_pred             ecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC-------CCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEE
Q 024372           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-------GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAK   86 (268)
Q Consensus        14 ~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~-------~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~   86 (268)
                      +|.++|.+++|+|   +|++||+|+.|++|++|+...       .+.+..+.+|++.|.+++|+|++.+|++|+.|++|+
T Consensus        56 ~h~~~v~~v~~sp---~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~  132 (330)
T 2hes_X           56 AHKKAIRSVAWRP---HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVW  132 (330)
T ss_dssp             CCCSCEEEEEECT---TSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEE
T ss_pred             CccCCEEEEEECC---CCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEE
Confidence            3999999999995   899999999999999999853       456788999999999999999999999999999999


Q ss_pred             EEeCCCC----Ceeeee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCC-CCCeEecCCcccEEEEEEeCCC-Cc
Q 024372           87 LWDALTG----DEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPD-APPREVGNSSGSIRTVAWLHSD-QT  159 (268)
Q Consensus        87 iw~~~~~----~~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~-~~  159 (268)
                      +||+...    .+...+ .|...|.+++|+|++++|++|+.|++|++||...+. .....+..|.+.|.+++|+|++ ..
T Consensus       133 iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  212 (330)
T 2hes_X          133 IWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVF  212 (330)
T ss_dssp             EEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSC
T ss_pred             EEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCee
Confidence            9999432    233444 488899999999999999999999999999986432 1234556788999999999874 34


Q ss_pred             EEEEeeCCCeEEEEeCCCC--------ceEEeec--CCCCEEEEEECCCCcEEEEeCCCeEEEEeCCCce--eeeEE-eC
Q 024372          160 ILSSCTDSGGVRLWDARSG--------KIVQTLE--TKSPVTSAEVSRDGRYITTADGSSVKFWDANHFG--LVKGY-NM  226 (268)
Q Consensus       160 ~~~~~~~d~~i~iwd~~~~--------~~~~~~~--~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~--~~~~~-~~  226 (268)
                      .+++++.|++|++||++++        .+...+.  +...+.+++|++++.+++++.|+.|++||.....  .+... ..
T Consensus       213 ~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~  292 (330)
T 2hes_X          213 RLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALC  292 (330)
T ss_dssp             EEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCT
T ss_pred             EEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccccc
Confidence            6778888999999999764        3444554  4567999999998877777889999999987653  23222 22


Q ss_pred             CC--CceeeEEcCC-CCCEEEeccCCCeEEEEECCC
Q 024372          227 PC--NTESASLEPK-LGNIFIAGGEDMWVHVFDFHT  259 (268)
Q Consensus       227 ~~--~~~~~~~~~~-~~~~~~~gs~d~~i~~wd~~~  259 (268)
                      +.  ....+.+.|. ++++|++||.|+.|++||+++
T Consensus       293 h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          293 HGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             TTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             cccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            22  3456667764 578999999999999999864

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2.1e-39  Score=275.91  Aligned_cols=248  Identities=18%  Similarity=0.213  Sum_probs=197.7

Q ss_pred             eecCCCeeeEEEecCCCCCcEEEEEeC------CCCeEEeeCCCCCeE----EEeeCccCcEEEEEecCCCcEEEEeeCC
Q 024372           13 HGHSRPVVDLFYSPITPDGFFLVSASK------DSSPMLRNGETGDWI----GTFEGHKGAVWSCCLDANALFSASGSAD   82 (268)
Q Consensus        13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~------d~~i~iw~~~~~~~~----~~~~~h~~~V~~~~~~~~~~~l~s~s~D   82 (268)
                      ..|++.|++++|+|   ||++||+|+.      |+++++|+..+++..    ....+|.+.|.+++|+|++.+ ++++.|
T Consensus        39 ~~H~~~V~~v~fSp---DG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~-l~~s~d  114 (357)
T 4g56_B           39 ACMEVQIGAVRYRR---DGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGI-LVASDS  114 (357)
T ss_dssp             -CCCSEEEEEEECS---SSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEE-EEEETT
T ss_pred             ccccCCEEEEEECC---CCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCE-EEEECC
Confidence            36999999999985   9999999998      677889988777533    344578999999999999875 567889


Q ss_pred             CcEEEEeCCCCCeee-----eeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCC
Q 024372           83 FTAKLWDALTGDEKH-----SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSD  157 (268)
Q Consensus        83 ~~v~iw~~~~~~~~~-----~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~  157 (268)
                      ++|+|||+.+++...     ...|...|.+++|+|+++.|++|+.|+.|++||+++++ ....+..|.+.+.+++|++++
T Consensus       115 g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~-~~~~~~~h~~~v~~v~~s~~~  193 (357)
T 4g56_B          115 GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKA-VLKSYNAHSSEVNCVAACPGK  193 (357)
T ss_dssp             SCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTC
T ss_pred             CEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc-EEEEEcCCCCCEEEEEEccCC
Confidence            999999998876433     23578899999999999999999999999999998654 334556788899999999988


Q ss_pred             CcEEEEeeCCCeEEEEeCCCCceEEeec---CCCCEEEEEECCCC-cEEEE-eCCCeEEEEeCCCceeeeEEeCCCC-ce
Q 024372          158 QTILSSCTDSGGVRLWDARSGKIVQTLE---TKSPVTSAEVSRDG-RYITT-ADGSSVKFWDANHFGLVKGYNMPCN-TE  231 (268)
Q Consensus       158 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~s~~g-~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~~-~~  231 (268)
                      ..++++++.|++|++||+++++++..+.   +...+.+++|+|++ .++++ +.|+.|++||+++.++++.+..+.. +.
T Consensus       194 ~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~  273 (357)
T 4g56_B          194 DTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNIT  273 (357)
T ss_dssp             SSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEE
T ss_pred             CceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEE
Confidence            7778888888999999999998776553   34568999999985 56665 5789999999999988888876554 56


Q ss_pred             eeEEcCCCCCEEEeccCCCeEEEEECCCCcEEee
Q 024372          232 SASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       232 ~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~  265 (268)
                      .++++|+.+++|++|+.|+.|++||+++++.+..
T Consensus       274 ~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~  307 (357)
T 4g56_B          274 GLAYSYHSSPFLASISEDCTVAVLDADFSEVFRD  307 (357)
T ss_dssp             EEEECSSSSCCEEEEETTSCEEEECTTSCEEEEE
T ss_pred             EEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEE
Confidence            7778876557899999999999999999988764

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.8e-38  Score=267.56  Aligned_cols=206  Identities=22%  Similarity=0.354  Sum_probs=170.6

Q ss_pred             eeecEEeeecCC-CeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEE---EeeCccCcEEEEEecCCCcEEEEeeC
Q 024372            6 VAVPLVCHGHSR-PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIG---TFEGHKGAVWSCCLDANALFSASGSA   81 (268)
Q Consensus         6 ~~~~~~~~~h~~-~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~---~~~~h~~~V~~~~~~~~~~~l~s~s~   81 (268)
                      +.....+.+|.+ .|.+++|+|   +|++||+|+.|++|++|+..+++...   ...+|.+.|.+++|+|++.+|++|+.
T Consensus         5 ~~~~~~~~~h~~~~v~~l~~sp---~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~   81 (345)
T 3fm0_A            5 LVLLGRVPAHPDSRCWFLAWNP---AGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF   81 (345)
T ss_dssp             EEEEEEECCSTTSCEEEEEECT---TSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEeeeecCCCCCcEEEEEECC---CCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEEC
Confidence            344555678998 999999985   89999999999999999998886432   23689999999999999999999999


Q ss_pred             CCcEEEEeCCCCC--eeeee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCC--CeEecCCcccEEEEEEeCC
Q 024372           82 DFTAKLWDALTGD--EKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP--PREVGNSSGSIRTVAWLHS  156 (268)
Q Consensus        82 D~~v~iw~~~~~~--~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~--~~~~~~~~~~v~~~~~~~~  156 (268)
                      |+++++|+...+.  +...+ .|...|.+++|+|++++|++|+.|+.|++||++.+...  ......|...+.+++|+|+
T Consensus        82 D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~  161 (345)
T 3fm0_A           82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPS  161 (345)
T ss_dssp             TSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSS
T ss_pred             CCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCC
Confidence            9999999987764  34444 48889999999999999999999999999999764321  2345567889999999998


Q ss_pred             CCcEEEEeeCCCeEEEEeCCCCc--eEEeecC-CCCEEEEEECCCCcEEEE-eCCCeEEEEeC
Q 024372          157 DQTILSSCTDSGGVRLWDARSGK--IVQTLET-KSPVTSAEVSRDGRYITT-ADGSSVKFWDA  215 (268)
Q Consensus       157 ~~~~~~~~~~d~~i~iwd~~~~~--~~~~~~~-~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~  215 (268)
                      +.. +++++.|++|++||+++++  +..++.. ...|.+++|+|+|++|++ +.|++|++||.
T Consensus       162 ~~~-l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~  223 (345)
T 3fm0_A          162 QEL-LASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQ  223 (345)
T ss_dssp             SSC-EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred             CCE-EEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEecc
Confidence            764 5566788999999998875  3456654 467999999999998876 57899999985

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=2.9e-39  Score=270.46  Aligned_cols=244  Identities=19%  Similarity=0.228  Sum_probs=191.1

Q ss_pred             EeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC--eEEEeeCccCcEEEEEecC--CCcEEEEeeCCCcEE
Q 024372           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDA--NALFSASGSADFTAK   86 (268)
Q Consensus        11 ~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~--~~~~~~~h~~~V~~~~~~~--~~~~l~s~s~D~~v~   86 (268)
                      .+.+|+++|++++|+|   +|++||+|+.|++|++||+.+++  ++.++.+|+++|.+++|++  ++.+|+||+.|++|+
T Consensus         8 ~~~~H~~~V~~v~~s~---~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~   84 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDY---YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVI   84 (316)
T ss_dssp             ------CCEEEEEECG---GGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEE
T ss_pred             ecccccCeEEEeeEcC---CCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEE
Confidence            3468999999999985   89999999999999999998874  5788999999999999976  478999999999999


Q ss_pred             EEeCCCCC--eeeee-ccCCeEEEEEECCC--CCEEEEeeCCCeEEEEECCCCCCC--CeEecCCcccEEEEEEeCCC--
Q 024372           87 LWDALTGD--EKHSF-EHKHIVRACAFSED--THLLLTGGFEKILRIFDLNRPDAP--PREVGNSSGSIRTVAWLHSD--  157 (268)
Q Consensus        87 iw~~~~~~--~~~~~-~~~~~v~~v~~~~~--~~~l~s~~~d~~i~~~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~--  157 (268)
                      +||+.++.  ....+ .|...|.+++|+|+  +.+|++|+.|+.|++||++.+...  ......|...+.+++|+|+.  
T Consensus        85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  164 (316)
T 3bg1_A           85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP  164 (316)
T ss_dssp             EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred             EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence            99998764  33344 48889999999997  789999999999999998754211  22334577788999998863  


Q ss_pred             --------------CcEEEEeeCCCeEEEEeCCCC---ceEEeecC-CCCEEEEEECCCC----cEEEE-eCCCeEEEEe
Q 024372          158 --------------QTILSSCTDSGGVRLWDARSG---KIVQTLET-KSPVTSAEVSRDG----RYITT-ADGSSVKFWD  214 (268)
Q Consensus       158 --------------~~~~~~~~~d~~i~iwd~~~~---~~~~~~~~-~~~v~~~~~s~~g----~~l~~-~~~~~v~~wd  214 (268)
                                    ..++++++.|++|+|||++.+   +++..+.. ...|.+++|+|++    .+|++ +.|++|++||
T Consensus       165 ~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~  244 (316)
T 3bg1_A          165 GSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWT  244 (316)
T ss_dssp             ------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEE
T ss_pred             ccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEE
Confidence                          246778888999999999865   35666664 4569999999986    56654 6799999999


Q ss_pred             CCCce----eeeEE-eCCCCceeeEEcCCCCCEEEeccCCCeEEEEECC
Q 024372          215 ANHFG----LVKGY-NMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (268)
Q Consensus       215 ~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~  258 (268)
                      ++...    ..+.+ .+...+..++++| ++++|++|+.|+.|++|+..
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~v~~v~~sp-~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          245 CDDASSNTWSPKLLHKFNDVVWHVSWSI-TANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             CSSTTCCCCBCCEEEECSSCEEEEEECT-TTCCEEEEESSSCEEEEEEC
T ss_pred             ccCccccchhhhhhhcCCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEEC
Confidence            87521    11222 2234456777777 69999999999999999975

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.5e-37  Score=260.67  Aligned_cols=251  Identities=19%  Similarity=0.277  Sum_probs=209.9

Q ss_pred             EeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC-----eEEEeeCccCcEEEEEecCCCcEEEEeeCCCcE
Q 024372           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD-----WIGTFEGHKGAVWSCCLDANALFSASGSADFTA   85 (268)
Q Consensus        11 ~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~-----~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v   85 (268)
                      .|.||+++|++++|+|  .++++||||+.|++|++||+.+++     ....+.+|.+.|.+++|+|++.++++++.|+.|
T Consensus        33 tL~GH~~~V~~v~~sp--~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i  110 (340)
T 4aow_A           33 TLKGHNGWVTQIATTP--QFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTL  110 (340)
T ss_dssp             EECCCSSCEEEEEECT--TCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             EECCccCCEEEEEEeC--CCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccc
Confidence            4679999999999997  246899999999999999987654     567889999999999999999999999999999


Q ss_pred             EEEeCCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCC-cEEEE
Q 024372           86 KLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ-TILSS  163 (268)
Q Consensus        86 ~iw~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~  163 (268)
                      ++|+........... +...+..+.++++++.+++++.|+.+++||+............|...+..+++.+... .++++
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s  190 (340)
T 4aow_A          111 RLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVS  190 (340)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEE
T ss_pred             eEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEE
Confidence            999998877666554 5567888899999999999999999999998654332233345678899999987654 46777


Q ss_pred             eeCCCeEEEEeCCCCceEEeecC-CCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCC
Q 024372          164 CTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGN  241 (268)
Q Consensus       164 ~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (268)
                      ++.|+.|++||+++++++..+.. ..+|.+++|+|++++|++ +.|+.|++||++..+.+..+..+.....+.+.+  +.
T Consensus       191 ~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~--~~  268 (340)
T 4aow_A          191 CGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSP--NR  268 (340)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECS--SS
T ss_pred             EcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCC--CC
Confidence            88889999999999999888864 567999999999998876 578999999999999998888777666777766  34


Q ss_pred             EEEeccCCCeEEEEECCCCcEEee
Q 024372          242 IFIAGGEDMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       242 ~~~~gs~d~~i~~wd~~~g~~~~~  265 (268)
                      .+++++.|+.|++||+++++.+..
T Consensus       269 ~~~~~~~d~~i~iwd~~~~~~~~~  292 (340)
T 4aow_A          269 YWLCAATGPSIKIWDLEGKIIVDE  292 (340)
T ss_dssp             SEEEEEETTEEEEEETTTTEEEEE
T ss_pred             ceeeccCCCEEEEEECCCCeEEEe
Confidence            567778899999999988776654

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.6e-38  Score=264.16  Aligned_cols=249  Identities=20%  Similarity=0.241  Sum_probs=193.0

Q ss_pred             eeeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCC--CeEEEe-eC-ccCcEEEEEecCCCcEEEEee
Q 024372            5 KVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG--DWIGTF-EG-HKGAVWSCCLDANALFSASGS   80 (268)
Q Consensus         5 ~~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~--~~~~~~-~~-h~~~V~~~~~~~~~~~l~s~s   80 (268)
                      .+.....+.+|.++|.+++|+|   +  +||+|+.|++|++|++..+  +.+..+ .+ |.+.|.+++|+|++.+|++|+
T Consensus         3 ~~~~~~~~~~h~~~v~~~~~s~---~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s   77 (330)
T 2hes_X            3 SINLIKSLKLYKEKIWSFDFSQ---G--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGS   77 (330)
T ss_dssp             CCEEEEEEECCSSCEEEEEEET---T--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEE
T ss_pred             ccccceeeccCCCceeeeccCC---C--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEe
Confidence            3445566789999999999985   4  9999999999999999875  456666 44 999999999999999999999


Q ss_pred             CCCcEEEEeCCCC-------Ceeeee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCC---CeEecCCcccEE
Q 024372           81 ADFTAKLWDALTG-------DEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP---PREVGNSSGSIR  149 (268)
Q Consensus        81 ~D~~v~iw~~~~~-------~~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~---~~~~~~~~~~v~  149 (268)
                      .|++|++|++...       .....+ .|...|.+++|+|++++|++|+.|+.|++||++.....   ...+..|...|.
T Consensus        78 ~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~  157 (330)
T 2hes_X           78 FDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVK  157 (330)
T ss_dssp             TTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEE
T ss_pred             CCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceE
Confidence            9999999998532       233333 48889999999999999999999999999998533211   234557888999


Q ss_pred             EEEEeCCCCcEEEEeeCCCeEEEEeCCCC--ceEEeecC-CCCEEEEEECCC--CcEEE-EeCCCeEEEEeCCCc-----
Q 024372          150 TVAWLHSDQTILSSCTDSGGVRLWDARSG--KIVQTLET-KSPVTSAEVSRD--GRYIT-TADGSSVKFWDANHF-----  218 (268)
Q Consensus       150 ~~~~~~~~~~~~~~~~~d~~i~iwd~~~~--~~~~~~~~-~~~v~~~~~s~~--g~~l~-~~~~~~v~~wd~~~~-----  218 (268)
                      +++|+|++. ++++++.|++|++||.+++  +++..+.. ...|.+++|+|+  +.+++ ++.|++|++||++..     
T Consensus       158 ~v~~~p~~~-~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~  236 (330)
T 2hes_X          158 HVIWHPSEA-LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQ  236 (330)
T ss_dssp             EEEECSSSS-EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSC
T ss_pred             EEEECCCCC-EEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcccc
Confidence            999998765 6667788899999999876  57777764 467999999998  66665 467899999998643     


Q ss_pred             ---eeeeEEeC--CCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCc
Q 024372          219 ---GLVKGYNM--PCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGE  261 (268)
Q Consensus       219 ---~~~~~~~~--~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~  261 (268)
                         .+...+..  ...+..+++.+  +.+|++|+.|+.|++||..+++
T Consensus       237 ~~~~~~~~~~~~h~~~v~~v~~s~--~~~l~s~~~dg~v~iw~~~~~~  282 (330)
T 2hes_X          237 QEWVCEAILPDVHKRQVYNVAWGF--NGLIASVGADGVLAVYEEVDGE  282 (330)
T ss_dssp             EEEEEEEECCSCCSSCEEEEEECT--TSCEEEEETTSCEEEEEEETTE
T ss_pred             ceeEEeeecccccccceEEEEEcC--CCEEEEEeCCCEEEEEEcCCCc
Confidence               23333332  22345666664  4589999999999999988774

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=6.5e-38  Score=269.83  Aligned_cols=240  Identities=21%  Similarity=0.296  Sum_probs=201.0

Q ss_pred             CCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCee
Q 024372           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEK   96 (268)
Q Consensus        17 ~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~   96 (268)
                      ..|++++|+|   +|++|++|+.|++|++||..+++.+..+.+|...|.+++|+|++.++++++.|++|++||+.++++.
T Consensus       124 ~~v~~v~~s~---dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~  200 (393)
T 1erj_A          124 LYIRSVCFSP---DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCS  200 (393)
T ss_dssp             CBEEEEEECT---TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             eeEEEEEECC---CCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeE
Confidence            3599999985   8999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             eeeccCCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCCCeE------ecCCcccEEEEEEeCCCCcEEEEeeCCCe
Q 024372           97 HSFEHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPRE------VGNSSGSIRTVAWLHSDQTILSSCTDSGG  169 (268)
Q Consensus        97 ~~~~~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~~~~~~~~d~~  169 (268)
                      ..+.+...+.+++|+| +++++++|+.|+.|++||++++......      ...|.+.|.+++|+|++. ++++++.|+.
T Consensus       201 ~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~l~s~s~d~~  279 (393)
T 1erj_A          201 LTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ-SVVSGSLDRS  279 (393)
T ss_dssp             EEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSS-EEEEEETTSE
T ss_pred             EEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCC-EEEEEeCCCE
Confidence            8888888999999999 8999999999999999998765422111      135778999999998775 4566778899


Q ss_pred             EEEEeCCCC------------ceEEeec-CCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCCC-ceeeE
Q 024372          170 VRLWDARSG------------KIVQTLE-TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCN-TESAS  234 (268)
Q Consensus       170 i~iwd~~~~------------~~~~~~~-~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~~-~~~~~  234 (268)
                      |++||+++.            .+...+. +...+.+++++|++.++++ +.|+.|++||+++.+++..+..+.. +..++
T Consensus       280 v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~  359 (393)
T 1erj_A          280 VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVA  359 (393)
T ss_dssp             EEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred             EEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEE
Confidence            999999764            3344444 4456999999999998876 5789999999999988888876554 45556


Q ss_pred             EcC-----CCCCEEEeccCCCeEEEEECCCC
Q 024372          235 LEP-----KLGNIFIAGGEDMWVHVFDFHTG  260 (268)
Q Consensus       235 ~~~-----~~~~~~~~gs~d~~i~~wd~~~g  260 (268)
                      +.+     +++.+|++||.|+.|++|+++..
T Consensus       360 ~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          360 VANGSSLGPEYNVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             ECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred             ecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence            554     25789999999999999998654

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=6.3e-38  Score=284.43  Aligned_cols=250  Identities=15%  Similarity=0.219  Sum_probs=204.5

Q ss_pred             ecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCC--CeEEEeeCccCcEEEEEecCCCcEEEEeeCC---
Q 024372            8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG--DWIGTFEGHKGAVWSCCLDANALFSASGSAD---   82 (268)
Q Consensus         8 ~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~--~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D---   82 (268)
                      ....+.+|++.|++++|+|   ||++||+|+.|++|+|||..++  .+..++.+|.++|.+++|+|+++++++++.+   
T Consensus        51 ~~~~~~~h~~~v~~~~~sp---dg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~  127 (611)
T 1nr0_A           51 DTEIYTEHSHQTTVAKTSP---SGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRER  127 (611)
T ss_dssp             CCEEECCCSSCEEEEEECT---TSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSC
T ss_pred             cCeEecCCCCceEEEEECC---CCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCc
Confidence            4455679999999999985   9999999999999999998754  3567889999999999999999999988865   


Q ss_pred             -CcEEEEeCCCCCeeeee-ccCCeEEEEEECCCCC-EEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCc
Q 024372           83 -FTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTH-LLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQT  159 (268)
Q Consensus        83 -~~v~iw~~~~~~~~~~~-~~~~~v~~v~~~~~~~-~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  159 (268)
                       +.|++||.  +.....+ .|...|.+++|+|++. .|++|+.|++|++||....+ ....+..|.+.|.+++|+|++. 
T Consensus       128 ~~~v~~wd~--~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~-~~~~l~~H~~~V~~v~fspdg~-  203 (611)
T 1nr0_A          128 FGHVFLFDT--GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK-FKSTFGEHTKFVHSVRYNPDGS-  203 (611)
T ss_dssp             SEEEEETTT--CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE-EEEEECCCSSCEEEEEECTTSS-
T ss_pred             eeEEEEeeC--CCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCe-EeeeeccccCceEEEEECCCCC-
Confidence             47888884  3333333 4888999999999986 69999999999999976543 2345567889999999999765 


Q ss_pred             EEEEeeCCCeEEEEeCCCCceEEeec--------CCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeC----
Q 024372          160 ILSSCTDSGGVRLWDARSGKIVQTLE--------TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNM----  226 (268)
Q Consensus       160 ~~~~~~~d~~i~iwd~~~~~~~~~~~--------~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~----  226 (268)
                      ++++++.|++|+|||+++++++..+.        +...|.+++|+|+|++|++ +.|++|++||+++++++..+..    
T Consensus       204 ~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~  283 (611)
T 1nr0_A          204 LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI  283 (611)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSG
T ss_pred             EEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCc
Confidence            56677788999999999999988873        4567999999999998875 5789999999988766554431    


Q ss_pred             ---------------------------------------C-CCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEee
Q 024372          227 ---------------------------------------P-CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       227 ---------------------------------------~-~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~  265 (268)
                                                             + ..+..++++| ++++|++|+.|+.|++||+.+++....
T Consensus       284 ~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~sp-dg~~l~s~s~D~~v~~Wd~~~~~~~~~  361 (611)
T 1nr0_A          284 EDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRV  361 (611)
T ss_dssp             GGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEC
T ss_pred             cceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeee
Confidence                                                   1 1234566666 799999999999999999998876543

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=6.3e-38  Score=288.18  Aligned_cols=243  Identities=25%  Similarity=0.340  Sum_probs=208.1

Q ss_pred             EEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEe
Q 024372           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (268)
Q Consensus        10 ~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~   89 (268)
                      ..+.+|...|.+++|+|   +|++|++|+.|++|++||+.+++.+..+.+|.+.|.+++|+|++.+++||+.|++|++||
T Consensus       424 ~~~~~h~~~v~~v~~s~---~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd  500 (694)
T 3dm0_A          424 RRLTGHSHFVEDVVLSS---DGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN  500 (694)
T ss_dssp             EEEECCSSCEEEEEECT---TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             ceecCCCCcEEEEEECC---CCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEE
Confidence            35679999999999985   899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCeeeee----ccCCeEEEEEECCCC--CEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEE
Q 024372           90 ALTGDEKHSF----EHKHIVRACAFSEDT--HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS  163 (268)
Q Consensus        90 ~~~~~~~~~~----~~~~~v~~v~~~~~~--~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  163 (268)
                      ..........    .|...|.+++|+|++  ..+++|+.|+.|++||++... ....+..|.+.|.+++|+|++. ++++
T Consensus       501 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~-~~~~~~~h~~~v~~v~~spdg~-~l~s  578 (694)
T 3dm0_A          501 TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK-LRSTLAGHTGYVSTVAVSPDGS-LCAS  578 (694)
T ss_dssp             TTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSS-EEEE
T ss_pred             CCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCc-EEEEEcCCCCCEEEEEEeCCCC-EEEE
Confidence            8654333222    377789999999986  689999999999999997653 3345567889999999998765 5667


Q ss_pred             eeCCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEeCCC---------------
Q 024372          164 CTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPC---------------  228 (268)
Q Consensus       164 ~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~~~---------------  228 (268)
                      ++.|+.|+|||+++++++..+..+..+.+++|+|++.+++++.++.|++||++....+..+....               
T Consensus       579 g~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  658 (694)
T 3dm0_A          579 GGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAAT  658 (694)
T ss_dssp             EETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC--------------
T ss_pred             EeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccC
Confidence            77889999999999999998888888999999999999998888899999999988776664321               


Q ss_pred             -----CceeeEEcCCCCCEEEeccCCCeEEEEECC
Q 024372          229 -----NTESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (268)
Q Consensus       229 -----~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~  258 (268)
                           ...++.++| +|++|++|+.|+.|++||+.
T Consensus       659 ~~~~~~~~~l~~sp-dg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          659 KRKVIYCTSLNWSA-DGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             --CCCCEEEEEECT-TSSEEEEEETTSEEEEEEC-
T ss_pred             CceeEEeeeEEEcC-CCCEEEEEcCCCeEEEEecc
Confidence                 123456666 79999999999999999975

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2.1e-37  Score=263.15  Aligned_cols=243  Identities=19%  Similarity=0.261  Sum_probs=206.2

Q ss_pred             ecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCC------CeEEEeeCccCcEEEEEecCCCcEEEEeeC
Q 024372            8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG------DWIGTFEGHKGAVWSCCLDANALFSASGSA   81 (268)
Q Consensus         8 ~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~------~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~   81 (268)
                      +...+..|...|.+++|+|   +|.+|++|+.|+++++|+....      +....+.+|.+.|.+++|+|++..+++++.
T Consensus        98 ~~~~~~~~~~~v~~~~~sp---~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~  174 (354)
T 2pbi_B           98 KEHAVTMPCTWVMACAYAP---SGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASG  174 (354)
T ss_dssp             EEEEEECSSSCCCEEEECT---TSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEET
T ss_pred             cceEEecCCCCEEEEEECC---CCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeC
Confidence            3445567899999999985   8999999999999999987643      345677889999999999999999999999


Q ss_pred             CCcEEEEeCCCCCeeeeec-cCCeEEEEEECC--CCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCC
Q 024372           82 DFTAKLWDALTGDEKHSFE-HKHIVRACAFSE--DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ  158 (268)
Q Consensus        82 D~~v~iw~~~~~~~~~~~~-~~~~v~~v~~~~--~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~  158 (268)
                      |++|++||+.+++....+. |...|.+++|+|  +++.|++|+.|+.|++||++++.. ...+..|...|.+++|+|++.
T Consensus       175 D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~-~~~~~~h~~~v~~v~~~p~~~  253 (354)
T 2pbi_B          175 DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC-VQAFETHESDVNSVRYYPSGD  253 (354)
T ss_dssp             TSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEEEEECTTSS
T ss_pred             CCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcE-EEEecCCCCCeEEEEEeCCCC
Confidence            9999999999999888775 888999999987  568999999999999999987543 345567888999999998765


Q ss_pred             cEEEEeeCCCeEEEEeCCCCceEEeecCC---CCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeCCCC-ceee
Q 024372          159 TILSSCTDSGGVRLWDARSGKIVQTLETK---SPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCN-TESA  233 (268)
Q Consensus       159 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~---~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~~~-~~~~  233 (268)
                       ++++++.|++|++||+++++.+..+..+   ..+.+++|+|+|++++++ .|+.|++||+.+...+..+..+.. +..+
T Consensus       254 -~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l  332 (354)
T 2pbi_B          254 -AFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTL  332 (354)
T ss_dssp             -EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEE
T ss_pred             -EEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEE
Confidence             5667788899999999999887776543   368899999999998765 689999999998888877765554 4566


Q ss_pred             EEcCCCCCEEEeccCCCeEEEEE
Q 024372          234 SLEPKLGNIFIAGGEDMWVHVFD  256 (268)
Q Consensus       234 ~~~~~~~~~~~~gs~d~~i~~wd  256 (268)
                      .++| ++++|++|+.|+.|++|+
T Consensus       333 ~~sp-dg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          333 RVSP-DGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EECT-TSSCEEEEETTSEEEEEC
T ss_pred             EECC-CCCEEEEEcCCCCEEecC
Confidence            6776 799999999999999996

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=9.5e-39  Score=277.96  Aligned_cols=246  Identities=18%  Similarity=0.279  Sum_probs=203.4

Q ss_pred             ecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC-----------eEEEeeCcc------------CcEEEEEec
Q 024372           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD-----------WIGTFEGHK------------GAVWSCCLD   70 (268)
Q Consensus        14 ~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~-----------~~~~~~~h~------------~~V~~~~~~   70 (268)
                      .|.+.|++++|+|   +|++||+|+.|+.|++|+..+++           +...+.+|.            +.|.+++|+
T Consensus        26 ~~~~~V~~v~~s~---~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~  102 (447)
T 3dw8_B           26 AEADIISTVEFNH---SGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL  102 (447)
T ss_dssp             CGGGSEEEEEECS---SSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEEC
T ss_pred             cccCcEEEEEECC---CCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEc
Confidence            4688999999995   89999999999999999998876           588899998            889999999


Q ss_pred             CCC--cEEEEeeCCCcEEEEeCCCCCee---------------------------------------ee--eccCCeEEE
Q 024372           71 ANA--LFSASGSADFTAKLWDALTGDEK---------------------------------------HS--FEHKHIVRA  107 (268)
Q Consensus        71 ~~~--~~l~s~s~D~~v~iw~~~~~~~~---------------------------------------~~--~~~~~~v~~  107 (268)
                      |++  .++++++.|++|++||+.++...                                       ..  ..|...|.+
T Consensus       103 ~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  182 (447)
T 3dw8_B          103 PQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINS  182 (447)
T ss_dssp             CCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCE
T ss_pred             CCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEE
Confidence            998  78999999999999998664331                                       11  247889999


Q ss_pred             EEECCCCCEEEEeeCCCeEEEEECCCCCCCCe-------EecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCce
Q 024372          108 CAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR-------EVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI  180 (268)
Q Consensus       108 v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~  180 (268)
                      ++|+|++++|++| .|+.|++||++.......       ....|...+.+++|+|++..++++++.|+.|++||+++++.
T Consensus       183 ~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~  261 (447)
T 3dw8_B          183 ISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASAL  261 (447)
T ss_dssp             EEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSS
T ss_pred             EEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcc
Confidence            9999999999998 799999999873322222       23467789999999998867788888899999999999886


Q ss_pred             ----EEeecCCC-------------CEEEEEECCCCcEEEEeCCCeEEEEeCCC-ceeeeEEeCCCCcee----------
Q 024372          181 ----VQTLETKS-------------PVTSAEVSRDGRYITTADGSSVKFWDANH-FGLVKGYNMPCNTES----------  232 (268)
Q Consensus       181 ----~~~~~~~~-------------~v~~~~~s~~g~~l~~~~~~~v~~wd~~~-~~~~~~~~~~~~~~~----------  232 (268)
                          +..+..+.             .+.+++|+|+|++|++++++.|++||++. .+++..+..+.....          
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  341 (447)
T 3dw8_B          262 CDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDC  341 (447)
T ss_dssp             SCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSG
T ss_pred             ccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeeccccccccccccccccc
Confidence                67776543             79999999999998876559999999987 777777776543222          


Q ss_pred             ------eEEcCCCCCEEEeccCCCeEEEEECCCCcEEe
Q 024372          233 ------ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIA  264 (268)
Q Consensus       233 ------~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~  264 (268)
                            +++++ ++++|++|+.|+.|++||+.+++.+.
T Consensus       342 i~~~~~~~~s~-~~~~l~s~s~dg~v~iwd~~~~~~~~  378 (447)
T 3dw8_B          342 IFDKFECCWNG-SDSVVMTGSYNNFFRMFDRNTKRDIT  378 (447)
T ss_dssp             GGCCCCEEECT-TSSEEEEECSTTEEEEEETTTCCEEE
T ss_pred             cccceEEEECC-CCCEEEEeccCCEEEEEEcCCCccee
Confidence                  67777 69999999999999999999988764

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-36  Score=257.67  Aligned_cols=256  Identities=23%  Similarity=0.431  Sum_probs=221.7

Q ss_pred             eeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcE
Q 024372            6 VAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTA   85 (268)
Q Consensus         6 ~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v   85 (268)
                      ..+++.+.+|.++|++++|+|   +|++|++|+.|+.|++||..+++.+..+.+|.+.|.+++|+|++.++++++.|+.|
T Consensus        22 ~~~~~~l~~h~~~v~~~~~s~---~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i   98 (369)
T 3zwl_B           22 HMKAIKLTGHERPLTQVKYNK---EGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSI   98 (369)
T ss_dssp             SEEEEEEECCSSCEEEEEECT---TSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEE
T ss_pred             ccccEEEEEeeceEEEEEEcC---CCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence            346677889999999999985   89999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCC-----CeEEEEECCCCCC----------CCeEecCCcc--cE
Q 024372           86 KLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFE-----KILRIFDLNRPDA----------PPREVGNSSG--SI  148 (268)
Q Consensus        86 ~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d-----~~i~~~d~~~~~~----------~~~~~~~~~~--~v  148 (268)
                      ++||+.+++....+.+...+.+++|+|+++.+++++.+     +.|++||+.....          .......+.+  .+
T Consensus        99 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (369)
T 3zwl_B           99 KLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAA  178 (369)
T ss_dssp             EEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCE
T ss_pred             EEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccce
Confidence            99999999999999999999999999999999999999     9999999875432          1222333444  89


Q ss_pred             EEEEEeCCCCcEEEEeeCCCeEEEEeCCC-CceEEeec-CCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEe
Q 024372          149 RTVAWLHSDQTILSSCTDSGGVRLWDARS-GKIVQTLE-TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYN  225 (268)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~d~~i~iwd~~~-~~~~~~~~-~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~  225 (268)
                      .+++|+|++.. +++++.|+.|++||+++ ++.+..+. +...+.+++|+|+++++++ +.|+.|++||+++.+.+..+.
T Consensus       179 ~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  257 (369)
T 3zwl_B          179 TVAGWSTKGKY-IIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE  257 (369)
T ss_dssp             EEEEECGGGCE-EEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             eEEEEcCCCCE-EEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec
Confidence            99999987664 55667789999999998 67777776 4567999999999998775 468999999999999888888


Q ss_pred             CCCCceeeEEcCCCCCEEEeccCCC--------------eEEEEECCCCcEEeec
Q 024372          226 MPCNTESASLEPKLGNIFIAGGEDM--------------WVHVFDFHTGEQIAIT  266 (268)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~gs~d~--------------~i~~wd~~~g~~~~~~  266 (268)
                      .......+.+.+ +++++++++.++              .+++||..+++++..+
T Consensus       258 ~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  311 (369)
T 3zwl_B          258 TDCPLNTAVITP-LKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRV  311 (369)
T ss_dssp             CSSCEEEEEECS-SSSEEEEEECCC-------------CEEEEEETTTCCEEEEE
T ss_pred             CCCCceeEEecC-CCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhe
Confidence            776777778777 699999998887              8999999998887653

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=9.1e-38  Score=287.13  Aligned_cols=250  Identities=19%  Similarity=0.243  Sum_probs=210.2

Q ss_pred             EeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCC-----CeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcE
Q 024372           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG-----DWIGTFEGHKGAVWSCCLDANALFSASGSADFTA   85 (268)
Q Consensus        11 ~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~-----~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v   85 (268)
                      .+.+|++.|++++|+|  .++++|++|+.|++|++|+..+.     .....+.+|...|.+++|+|++.+++||+.|++|
T Consensus       377 ~l~~H~~~V~~v~~~~--~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v  454 (694)
T 3dm0_A          377 TMRAHTDMVTAIATPI--DNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGEL  454 (694)
T ss_dssp             EEECCSSCEEEEECCT--TCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             hcccCCceeEEEEecC--CCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcE
Confidence            4679999999999986  35679999999999999998763     3567889999999999999999999999999999


Q ss_pred             EEEeCCCCCeeeee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeE---ecCCcccEEEEEEeCCCC-cE
Q 024372           86 KLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE---VGNSSGSIRTVAWLHSDQ-TI  160 (268)
Q Consensus        86 ~iw~~~~~~~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~---~~~~~~~v~~~~~~~~~~-~~  160 (268)
                      ++||+.++.....+ .|...|.+++|+|+++.|++|+.|++|++||..... ....   ...|...|.+++|+|++. .+
T Consensus       455 ~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~  533 (694)
T 3dm0_A          455 RLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGEC-KYTISEGGEGHRDWVSCVRFSPNTLQPT  533 (694)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE-EEEECSSTTSCSSCEEEEEECSCSSSCE
T ss_pred             EEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCc-ceeeccCCCCCCCcEEEEEEeCCCCcce
Confidence            99999998887766 488999999999999999999999999999975321 1111   134677899999998763 46


Q ss_pred             EEEeeCCCeEEEEeCCCCceEEeecC-CCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCCCceeeEEcCC
Q 024372          161 LSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPK  238 (268)
Q Consensus       161 ~~~~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~  238 (268)
                      +++++.|++|++||++++++..++.. ...+.+++|+|+++++++ +.|+.|++||+++.+.+..+..+.....++++| 
T Consensus       534 l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp-  612 (694)
T 3dm0_A          534 IVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSP-  612 (694)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECS-
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcC-
Confidence            77888889999999999999888874 467999999999998876 578999999999998887777666677778877 


Q ss_pred             CCCEEEeccCCCeEEEEECCCCcEEee
Q 024372          239 LGNIFIAGGEDMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       239 ~~~~~~~gs~d~~i~~wd~~~g~~~~~  265 (268)
                      ++.++++++ |+.|++||+.+++.+..
T Consensus       613 ~~~~l~~~~-~~~i~iwd~~~~~~~~~  638 (694)
T 3dm0_A          613 NRYWLCAAT-EHGIKIWDLESKSIVED  638 (694)
T ss_dssp             SSSEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred             CCcEEEEEc-CCCEEEEECCCCCChhh
Confidence            577666654 56699999999887754

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=4.9e-37  Score=255.79  Aligned_cols=245  Identities=21%  Similarity=0.388  Sum_probs=204.8

Q ss_pred             cEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEE
Q 024372            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLW   88 (268)
Q Consensus         9 ~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw   88 (268)
                      ...+.+|..+|.+++|+|   +|++|++|+.|++|++||..+++.+..+.+|...|.+++|+|++.++++|+.|++|++|
T Consensus        58 ~~~~~~h~~~v~~~~~~~---~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iw  134 (312)
T 4ery_A           58 EKTISGHKLGISDVAWSS---DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW  134 (312)
T ss_dssp             EEEECCCSSCEEEEEECT---TSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred             chhhccCCCceEEEEEcC---CCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Confidence            345678999999999985   89999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCC
Q 024372           89 DALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS  167 (268)
Q Consensus        89 ~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d  167 (268)
                      |+.++.....+. |..+|.+++|+|+++.+++++.|+.|++||+++++........+...+..++|+|++.. +++++.|
T Consensus       135 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~d  213 (312)
T 4ery_A          135 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY-ILAATLD  213 (312)
T ss_dssp             ETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSE-EEEEETT
T ss_pred             ECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCE-EEEEcCC
Confidence            999988877765 77899999999999999999999999999998655433333456678899999987765 5556778


Q ss_pred             CeEEEEeCCCCceEEeecCCC-C---EEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCCC-ceeeEEcCCCCC
Q 024372          168 GGVRLWDARSGKIVQTLETKS-P---VTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCN-TESASLEPKLGN  241 (268)
Q Consensus       168 ~~i~iwd~~~~~~~~~~~~~~-~---v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~  241 (268)
                      +.|++||+++++++..+..+. .   +......+++.++++ +.|+.|++||++..+.++.+..+.. +..+.++| ++.
T Consensus       214 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p-~~~  292 (312)
T 4ery_A          214 NTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP-TEN  292 (312)
T ss_dssp             TEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECS-SSS
T ss_pred             CeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecC-cCC
Confidence            999999999999988886432 1   223334467777766 4689999999999988888876655 45566666 688


Q ss_pred             EEEecc--CCCeEEEEECC
Q 024372          242 IFIAGG--EDMWVHVFDFH  258 (268)
Q Consensus       242 ~~~~gs--~d~~i~~wd~~  258 (268)
                      ++++++  .|+.|++|+..
T Consensus       293 ~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          293 IIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             EEEEEECTTTCCEEEEECC
T ss_pred             ceEEEEccCCccEEEecCC
Confidence            999886  69999999863

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=9.5e-38  Score=283.25  Aligned_cols=245  Identities=13%  Similarity=0.146  Sum_probs=207.1

Q ss_pred             eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCC
Q 024372           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT   92 (268)
Q Consensus        13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~   92 (268)
                      ..+.+.+.+++|+|   ||++||+++ ++++++|+..+++....+.+|.+.|.+++|+|++.++|||+.|++|+|||+.+
T Consensus        15 ~~~~g~~~~~~~sp---dg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~   90 (611)
T 1nr0_A           15 RTARGTAVVLGNTP---AGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQ   90 (611)
T ss_dssp             CCCTTCCCCCEECT---TSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSS
T ss_pred             CcccCceeEEeeCC---CCCEEEeCC-CCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCC
Confidence            35778889999985   999999998 56999999999999999999999999999999999999999999999999975


Q ss_pred             CCe--eeee-ccCCeEEEEEECCCCCEEEEeeCC----CeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEee
Q 024372           93 GDE--KHSF-EHKHIVRACAFSEDTHLLLTGGFE----KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT  165 (268)
Q Consensus        93 ~~~--~~~~-~~~~~v~~v~~~~~~~~l~s~~~d----~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  165 (268)
                      +..  ...+ .|...|.+++|+|+++.|++++.+    +.+++||...   ....+..|.+.|.+++|+|+++..+++++
T Consensus        91 ~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~---~~~~l~gh~~~v~~v~f~p~~~~~l~s~s  167 (611)
T 1nr0_A           91 TTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT---SNGNLTGQARAMNSVDFKPSRPFRIISGS  167 (611)
T ss_dssp             TTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCC---BCBCCCCCSSCEEEEEECSSSSCEEEEEE
T ss_pred             CcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCC---CcceecCCCCCceEEEECCCCCeEEEEEe
Confidence            443  3333 478899999999999999998865    3788888532   23445578889999999998887788889


Q ss_pred             CCCeEEEEeCCCCceEEeecCC-CCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEe--------CCCCceeeEE
Q 024372          166 DSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYN--------MPCNTESASL  235 (268)
Q Consensus       166 ~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~--------~~~~~~~~~~  235 (268)
                      .|++|++||.++++++.++..| ..|.+++|+|+|+++++ +.|++|++||+++.+++..+.        +...+..+.+
T Consensus       168 ~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~  247 (611)
T 1nr0_A          168 DDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTW  247 (611)
T ss_dssp             TTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEE
T ss_pred             CCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEE
Confidence            9999999999999998888754 56999999999998875 578999999999888777663        2234556777


Q ss_pred             cCCCCCEEEeccCCCeEEEEECCCCcEEee
Q 024372          236 EPKLGNIFIAGGEDMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       236 ~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~  265 (268)
                      +| ++++|++|+.|+.|++||+.+++.+..
T Consensus       248 sp-dg~~l~s~s~D~~v~lWd~~~~~~~~~  276 (611)
T 1nr0_A          248 SP-DGTKIASASADKTIKIWNVATLKVEKT  276 (611)
T ss_dssp             CT-TSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             CC-CCCEEEEEeCCCeEEEEeCCCCceeee
Confidence            77 699999999999999999999887654

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=5.4e-37  Score=262.41  Aligned_cols=251  Identities=13%  Similarity=0.129  Sum_probs=204.7

Q ss_pred             ecEEeeecCCCeeeEEEecCCCCC-cEEEEEeCCCCeEEeeCCCCCeEEEee--CccCcEEEEEecC-CCcEEEEeeCCC
Q 024372            8 VPLVCHGHSRPVVDLFYSPITPDG-FFLVSASKDSSPMLRNGETGDWIGTFE--GHKGAVWSCCLDA-NALFSASGSADF   83 (268)
Q Consensus         8 ~~~~~~~h~~~v~~~~f~~~~~dg-~~l~s~s~d~~i~iw~~~~~~~~~~~~--~h~~~V~~~~~~~-~~~~l~s~s~D~   83 (268)
                      ....+.+|.+.|.+++|+|   +| ++|++|+.|++|++||..+++....+.  +|.+.|.+++|+| ++.++++++.|+
T Consensus        65 ~~~~~~~h~~~v~~~~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~  141 (383)
T 3ei3_B           65 LHRTASPFDRRVTSLEWHP---THPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRG  141 (383)
T ss_dssp             EEEEECCCSSCEEEEEECS---SCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTT
T ss_pred             eEEeccCCCCCEEEEEECC---CCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCC
Confidence            3445679999999999996   77 899999999999999999988777765  6999999999999 678999999999


Q ss_pred             cEEEEeCCCCCeeeeec---cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcE
Q 024372           84 TAKLWDALTGDEKHSFE---HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTI  160 (268)
Q Consensus        84 ~v~iw~~~~~~~~~~~~---~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  160 (268)
                      .|++||+..........   +...|.+++|+|+++.|++|+.|+.|++||++ + ........|.+.+.+++|+|++..+
T Consensus       142 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~-~~~~~~~~h~~~v~~~~~~~~~~~~  219 (383)
T 3ei3_B          142 ATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-G-HEIFKEKLHKAKVTHAEFNPRCDWL  219 (383)
T ss_dssp             EEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-S-CEEEEEECSSSCEEEEEECSSCTTE
T ss_pred             EEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-C-CEEEEeccCCCcEEEEEECCCCCCE
Confidence            99999998644333322   34679999999999999999999999999984 2 2345556788899999999988867


Q ss_pred             EEEeeCCCeEEEEeCCC----CceEEeecCCCCEEEEEECC-CCcEEEE-eCCCeEEEEeCCCceeeeEEeCCC------
Q 024372          161 LSSCTDSGGVRLWDARS----GKIVQTLETKSPVTSAEVSR-DGRYITT-ADGSSVKFWDANHFGLVKGYNMPC------  228 (268)
Q Consensus       161 ~~~~~~d~~i~iwd~~~----~~~~~~~~~~~~v~~~~~s~-~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~------  228 (268)
                      +++++.|+.|++||+++    ++++..+.+...+.+++|+| +++++++ +.|+.|++||+++.+.+..+..+.      
T Consensus       220 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  299 (383)
T 3ei3_B          220 MATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQH  299 (383)
T ss_dssp             EEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTT
T ss_pred             EEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccccc
Confidence            88888899999999998    67788887778899999999 9988875 568999999998876655554211      


Q ss_pred             -Cce-----------eeEEcCCCCCEEEeccCCCeEEEEECCCCcEEeec
Q 024372          229 -NTE-----------SASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       229 -~~~-----------~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~~  266 (268)
                       ...           .+.+.+ ++++  +|+.|+.|++||+.+++.+..+
T Consensus       300 ~~~~~~~~~p~~~~~~~~~s~-dg~~--s~s~d~~i~iwd~~~~~~~~~l  346 (383)
T 3ei3_B          300 LTPIKATWHPMYDLIVAGRYP-DDQL--LLNDKRTIDIYDANSGGLVHQL  346 (383)
T ss_dssp             SCCCCCEECSSSSEEEEECBC-CTTT--CTTCCCCEEEEETTTCCEEEEE
T ss_pred             ccceEEeccCCCCceEEEecC-Cccc--ccCCCCeEEEEecCCCceeeee
Confidence             111           123333 4554  7889999999999999987764

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.9e-36  Score=253.51  Aligned_cols=252  Identities=19%  Similarity=0.220  Sum_probs=203.7

Q ss_pred             EeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCC----CeEEEeeCccCcEEEEEecC--CCcEEEEeeCCCc
Q 024372           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG----DWIGTFEGHKGAVWSCCLDA--NALFSASGSADFT   84 (268)
Q Consensus        11 ~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~----~~~~~~~~h~~~V~~~~~~~--~~~~l~s~s~D~~   84 (268)
                      .+.+|.++|++++|+|   +|++||+|+.|++|++|+..++    +.+..+.+|.+.|.+++|+|  ++.++++++.|++
T Consensus         6 ~~~gH~~~v~~~~~~~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~   82 (351)
T 3f3f_A            6 FDSGHDDLVHDVVYDF---YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKT   82 (351)
T ss_dssp             EECCCSSCEEEEEECS---SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred             cCcccccceeEEEEcC---CCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCe
Confidence            3569999999999985   8999999999999999999876    46788899999999999999  6899999999999


Q ss_pred             EEEEeCCCCC---------eeeee-ccCCeEEEEEECCC--CCEEEEeeCCCeEEEEECCCCCCCCeEe-----------
Q 024372           85 AKLWDALTGD---------EKHSF-EHKHIVRACAFSED--THLLLTGGFEKILRIFDLNRPDAPPREV-----------  141 (268)
Q Consensus        85 v~iw~~~~~~---------~~~~~-~~~~~v~~v~~~~~--~~~l~s~~~d~~i~~~d~~~~~~~~~~~-----------  141 (268)
                      |++||+.++.         ....+ .|...|.+++|+|+  ++.+++++.|+.|++||++.++......           
T Consensus        83 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  162 (351)
T 3f3f_A           83 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIP  162 (351)
T ss_dssp             EEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCC
T ss_pred             EEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccc
Confidence            9999998763         23333 47889999999999  9999999999999999997665332211           


Q ss_pred             -cCCcccEEEEEEeCC--CCcEEEEeeCCCeEEEEeCCCCce--EEeec-CCCCEEEEEECCCC----cEEEE-eCCCeE
Q 024372          142 -GNSSGSIRTVAWLHS--DQTILSSCTDSGGVRLWDARSGKI--VQTLE-TKSPVTSAEVSRDG----RYITT-ADGSSV  210 (268)
Q Consensus       142 -~~~~~~v~~~~~~~~--~~~~~~~~~~d~~i~iwd~~~~~~--~~~~~-~~~~v~~~~~s~~g----~~l~~-~~~~~v  210 (268)
                       ..+...+.+++|+|.  ++.++++++.++.+.+|+...++.  +..+. +...+.+++|+|++    +++++ +.|+.|
T Consensus       163 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i  242 (351)
T 3f3f_A          163 PANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRI  242 (351)
T ss_dssp             CSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCE
T ss_pred             cCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeE
Confidence             145678899999986  345677777889998888887765  55555 45679999999998    66665 578999


Q ss_pred             EEEeCCCc----------------------------------------------eeeeEEeCCC-CceeeEEcCCCCCEE
Q 024372          211 KFWDANHF----------------------------------------------GLVKGYNMPC-NTESASLEPKLGNIF  243 (268)
Q Consensus       211 ~~wd~~~~----------------------------------------------~~~~~~~~~~-~~~~~~~~~~~~~~~  243 (268)
                      ++||++..                                              ..+..+..+. .+..+.+++ ++++|
T Consensus       243 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l  321 (351)
T 3f3f_A          243 RIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNL-TGTIL  321 (351)
T ss_dssp             EEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECS-SSCCE
T ss_pred             EEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcC-CCCEE
Confidence            99998753                                              3444454443 355667776 68999


Q ss_pred             EeccCCCeEEEEECCCCcEEeec
Q 024372          244 IAGGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       244 ~~gs~d~~i~~wd~~~g~~~~~~  266 (268)
                      ++|+.|+.|++||+.+++++..+
T Consensus       322 ~s~~~dg~v~iw~~~~~~~~~~~  344 (351)
T 3f3f_A          322 SSAGDDGKVRLWKATYSNEFKCM  344 (351)
T ss_dssp             EEEETTSCEEEEEECTTSCEEEE
T ss_pred             EEecCCCcEEEEecCcCcchhhe
Confidence            99999999999999988766553

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=5.8e-37  Score=262.78  Aligned_cols=256  Identities=16%  Similarity=0.146  Sum_probs=213.8

Q ss_pred             cceeeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC------eEEEeeCccCcEEEEEecCC----
Q 024372            3 KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD------WIGTFEGHKGAVWSCCLDAN----   72 (268)
Q Consensus         3 ~~~~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~------~~~~~~~h~~~V~~~~~~~~----   72 (268)
                      +..+.....+.+|.++|++++|+|     .+|++|+.|++|++|+..+++      .+..+.+|...|.+++|+|+    
T Consensus         3 ~~~~~~~~~~~~h~~~i~~~~~~~-----~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~   77 (397)
T 1sq9_A            3 KVFIATANAGKAHDADIFSVSACN-----SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERD   77 (397)
T ss_dssp             CEEEEEEEESSCSSSCEEEEEECS-----SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETT
T ss_pred             hhhhhhhhhhhhhhcCeEEEEecC-----CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccC
Confidence            334445556679999999999985     599999999999999999988      78899999999999999999    


Q ss_pred             C---cEEEEeeCCCcEEEEeCCCCCe-----eeeec-c-----CCeEEEEEEC----CCCCE-EEEeeCCCeEEEEECCC
Q 024372           73 A---LFSASGSADFTAKLWDALTGDE-----KHSFE-H-----KHIVRACAFS----EDTHL-LLTGGFEKILRIFDLNR  133 (268)
Q Consensus        73 ~---~~l~s~s~D~~v~iw~~~~~~~-----~~~~~-~-----~~~v~~v~~~----~~~~~-l~s~~~d~~i~~~d~~~  133 (268)
                      +   .++++++.|+.|++|++.++..     ...+. |     ...|.+++|+    |+++. |++++.|+.|++||++.
T Consensus        78 g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  157 (397)
T 1sq9_A           78 AFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHP  157 (397)
T ss_dssp             TEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEES
T ss_pred             CccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCc
Confidence            9   9999999999999999988775     55553 5     4889999999    99999 99999999999999976


Q ss_pred             ------CCCCC----eEe-------cCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecC-------CCC
Q 024372          134 ------PDAPP----REV-------GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-------KSP  189 (268)
Q Consensus       134 ------~~~~~----~~~-------~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-------~~~  189 (268)
                            .....    ..+       ..|...+.+++|+|++  ++++++.|+.|++||+++++.+..+..       ...
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~  235 (397)
T 1sq9_A          158 FADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNS  235 (397)
T ss_dssp             SSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCC
T ss_pred             cccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCc
Confidence                  44332    033       3467789999999977  677778889999999999999988876       677


Q ss_pred             EEEEEECCCCcEEEEe-CC---CeEEEEeCCCceeeeEEeC-------------C-CCceeeEEcCCCCCEEEeccCCCe
Q 024372          190 VTSAEVSRDGRYITTA-DG---SSVKFWDANHFGLVKGYNM-------------P-CNTESASLEPKLGNIFIAGGEDMW  251 (268)
Q Consensus       190 v~~~~~s~~g~~l~~~-~~---~~v~~wd~~~~~~~~~~~~-------------~-~~~~~~~~~~~~~~~~~~gs~d~~  251 (268)
                      +.+++|+|++++++++ .+   +.|++||+++.+.+..+..             + ..+..+.+.+ ++++|++|+.|+.
T Consensus       236 i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~  314 (397)
T 1sq9_A          236 IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGK  314 (397)
T ss_dssp             EEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSE
T ss_pred             cceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECC-CCCEEEEEeCCCe
Confidence            9999999999988765 56   8999999999888887765             3 3455677776 6999999999999


Q ss_pred             EEEEECCCCcEEeec
Q 024372          252 VHVFDFHTGEQIAIT  266 (268)
Q Consensus       252 i~~wd~~~g~~~~~~  266 (268)
                      |++||+.+++.+..+
T Consensus       315 i~iwd~~~~~~~~~~  329 (397)
T 1sq9_A          315 LRFWDVKTKERITTL  329 (397)
T ss_dssp             EEEEETTTTEEEEEE
T ss_pred             EEEEEcCCCceeEEE
Confidence            999999999887764

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.2e-37  Score=260.74  Aligned_cols=248  Identities=18%  Similarity=0.258  Sum_probs=202.5

Q ss_pred             EEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCC--CCCeEEEeeCccCcEEEEEecCC--CcEEEEeeCCCcE
Q 024372           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGE--TGDWIGTFEGHKGAVWSCCLDAN--ALFSASGSADFTA   85 (268)
Q Consensus        10 ~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~--~~~~~~~~~~h~~~V~~~~~~~~--~~~l~s~s~D~~v   85 (268)
                      ..+.+|.++|++++|+|   +|++||+|+.|++|++|+..  +++.+..+.+|.+.|.+++|+++  +.++++++.|+.|
T Consensus         5 ~~~~~h~~~v~~~~~s~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v   81 (379)
T 3jrp_A            5 VIANAHNELIHDAVLDY---YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV   81 (379)
T ss_dssp             CCEEECCCCEEEEEECS---SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred             EEecCCcccEEEEEEcC---CCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence            45679999999999985   89999999999999999988  56778899999999999999977  8999999999999


Q ss_pred             EEEeCCCCC--eeeee-ccCCeEEEEEECCC--CCEEEEeeCCCeEEEEECCCCCCCC-eEecCCcccEEEEEEeCC---
Q 024372           86 KLWDALTGD--EKHSF-EHKHIVRACAFSED--THLLLTGGFEKILRIFDLNRPDAPP-REVGNSSGSIRTVAWLHS---  156 (268)
Q Consensus        86 ~iw~~~~~~--~~~~~-~~~~~v~~v~~~~~--~~~l~s~~~d~~i~~~d~~~~~~~~-~~~~~~~~~v~~~~~~~~---  156 (268)
                      ++||+.++.  ....+ .|...|.+++|+|+  ++.+++++.|+.|++||++...... .....|...+.+++|+|.   
T Consensus        82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  161 (379)
T 3jrp_A           82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE  161 (379)
T ss_dssp             EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC--
T ss_pred             EEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccc
Confidence            999998886  44444 47889999999999  9999999999999999998654332 344567889999999985   


Q ss_pred             ---------CCcEEEEeeCCCeEEEEeCCCCc----eEEeec-CCCCEEEEEECCC---CcEEEE-eCCCeEEEEeCCCc
Q 024372          157 ---------DQTILSSCTDSGGVRLWDARSGK----IVQTLE-TKSPVTSAEVSRD---GRYITT-ADGSSVKFWDANHF  218 (268)
Q Consensus       157 ---------~~~~~~~~~~d~~i~iwd~~~~~----~~~~~~-~~~~v~~~~~s~~---g~~l~~-~~~~~v~~wd~~~~  218 (268)
                               ++.++++++.|+.|++||+++++    .+..+. +...+.+++|+|+   ++++++ +.|+.|++||++..
T Consensus       162 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~  241 (379)
T 3jrp_A          162 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE  241 (379)
T ss_dssp             --------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred             ccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence                     45567777888999999998765    334454 4567999999999   888765 56899999999875


Q ss_pred             ee---eeEEe---CCCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCc
Q 024372          219 GL---VKGYN---MPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGE  261 (268)
Q Consensus       219 ~~---~~~~~---~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~  261 (268)
                      ..   ...+.   .......+.+++ ++++|++++.|+.|++||+.++.
T Consensus       242 ~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~iw~~~~~~  289 (379)
T 3jrp_A          242 QGPWKKTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWKENLEG  289 (379)
T ss_dssp             TSCCEEEESSSSCCSSCEEEEEECS-SSCCEEEEESSSSEEEEEEEETT
T ss_pred             CccceeeeeccccCCCcEEEEEEcC-CCCEEEEecCCCcEEEEeCCCCC
Confidence            31   12221   233455677777 69999999999999999987544

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.3e-36  Score=259.62  Aligned_cols=245  Identities=22%  Similarity=0.303  Sum_probs=206.4

Q ss_pred             ecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCC-
Q 024372           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT-   92 (268)
Q Consensus        14 ~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~-   92 (268)
                      .|...|.+++|+|   +|.+|++|+.|+.+++||..+++.+..+.+|.+.|.+++|  ++.++++++.|+.|++||+.. 
T Consensus       132 ~~~~~v~~v~~s~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~  206 (401)
T 4aez_A          132 DESTYVASVKWSH---DGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIA  206 (401)
T ss_dssp             CTTCCEEEEEECT---TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSS
T ss_pred             CCCCCEEEEEECC---CCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccC
Confidence            4899999999995   8999999999999999999999999999999999999999  457899999999999999984 


Q ss_pred             CCeeeee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEee--CCCe
Q 024372           93 GDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT--DSGG  169 (268)
Q Consensus        93 ~~~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~d~~  169 (268)
                      ......+ .|...|.+++|+|+++.|++|+.|+.|++||++++. .......|...+.+++|+|++..++++++  .|+.
T Consensus       207 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~  285 (401)
T 4aez_A          207 NHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSI-PKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQ  285 (401)
T ss_dssp             SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSS-EEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCE
T ss_pred             cceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCC-ccEEecCCcceEEEEEECCCCCCEEEEecCCCCCE
Confidence            4444444 488899999999999999999999999999998643 23445567889999999998888888865  6899


Q ss_pred             EEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEE--e-CCCeEEEEeCCCceeeeEE--eCC-CCceeeEEcCCCCCEE
Q 024372          170 VRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT--A-DGSSVKFWDANHFGLVKGY--NMP-CNTESASLEPKLGNIF  243 (268)
Q Consensus       170 i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~--~-~~~~v~~wd~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~  243 (268)
                      |++||+++++++..+.+...+.+++|+|+++++++  + .++.|++||+.........  ..+ ..+..+.+++ ++.+|
T Consensus       286 i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l  364 (401)
T 4aez_A          286 IHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSP-DGRIL  364 (401)
T ss_dssp             EEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECT-TSSEE
T ss_pred             EEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECC-CCCEE
Confidence            99999999999999988888999999999998876  3 5899999999886555443  333 3456677777 69999


Q ss_pred             EeccCCCeEEEEECCCCcEEee
Q 024372          244 IAGGEDMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       244 ~~gs~d~~i~~wd~~~g~~~~~  265 (268)
                      ++|+.|+.|++||+.+++.+..
T Consensus       365 ~s~~~dg~i~iw~~~~~~~~~~  386 (401)
T 4aez_A          365 STAASDENLKFWRVYDGDHVKR  386 (401)
T ss_dssp             EEECTTSEEEEEECCC------
T ss_pred             EEEeCCCcEEEEECCCCccccc
Confidence            9999999999999999887653

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=7.6e-36  Score=249.63  Aligned_cols=252  Identities=16%  Similarity=0.183  Sum_probs=209.5

Q ss_pred             eecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCe---EEEee--CccCcEEEEEecCCCcEEEEeeC
Q 024372            7 AVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW---IGTFE--GHKGAVWSCCLDANALFSASGSA   81 (268)
Q Consensus         7 ~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~---~~~~~--~h~~~V~~~~~~~~~~~l~s~s~   81 (268)
                      ..++...+|.++|.+++|+|   +|++|++++ |+.+++|+..+++.   +..+.  +|...|.+++|+|++.++++++.
T Consensus        42 ~~~~~~~~h~~~v~~~~~~~---~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  117 (337)
T 1gxr_A           42 ARQINTLNHGEVVCAVTISN---PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE  117 (337)
T ss_dssp             EEEEEEECCSSCCCEEEECS---SSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEES
T ss_pred             cccceeccCCCceEEEEEec---CCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcC
Confidence            44455568999999999985   899999999 99999999988753   33343  79999999999999999999999


Q ss_pred             CCcEEEEeCCCCC--eeeee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCC
Q 024372           82 DFTAKLWDALTGD--EKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ  158 (268)
Q Consensus        82 D~~v~iw~~~~~~--~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~  158 (268)
                      |+.|++||+.++.  ....+ .|...+.+++|+|+++.+++++.|+.|++||+++++ .......|.+.+.+++|+|++.
T Consensus       118 d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~  196 (337)
T 1gxr_A          118 ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT-LVRQFQGHTDGASCIDISNDGT  196 (337)
T ss_dssp             SSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSS
T ss_pred             CCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc-eeeeeecccCceEEEEECCCCC
Confidence            9999999998877  33333 477789999999999999999999999999997653 3345556788999999998765


Q ss_pred             cEEEEeeCCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeCCCCceeeEEcC
Q 024372          159 TILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTESASLEP  237 (268)
Q Consensus       159 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~  237 (268)
                       .+++++.|+.|++||+++++.+..+.+...+.+++|+|++++++++ .++.|++||++..+..........+..+.+++
T Consensus       197 -~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~  275 (337)
T 1gxr_A          197 -KLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAY  275 (337)
T ss_dssp             -EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECT
T ss_pred             -EEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECC
Confidence             5556677899999999999999988888889999999999988764 68999999998876654444444566777777


Q ss_pred             CCCCEEEeccCCCeEEEEECCCCcEEee
Q 024372          238 KLGNIFIAGGEDMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       238 ~~~~~~~~gs~d~~i~~wd~~~g~~~~~  265 (268)
                       ++++|++++.|+.|++||+.+++.+..
T Consensus       276 -~~~~l~~~~~dg~i~~~~~~~~~~~~~  302 (337)
T 1gxr_A          276 -CGKWFVSTGKDNLLNAWRTPYGASIFQ  302 (337)
T ss_dssp             -TSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             -CCCEEEEecCCCcEEEEECCCCeEEEE
Confidence             699999999999999999999887643

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.5e-35  Score=257.10  Aligned_cols=249  Identities=15%  Similarity=0.255  Sum_probs=212.1

Q ss_pred             eecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEE
Q 024372            7 AVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAK   86 (268)
Q Consensus         7 ~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~   86 (268)
                      ...+.+++|...|++++|+|   +|++||+|+.|++|++||..+++.+.++.+|...|.++++.  +.++++|+.|+.++
T Consensus       138 ~~~~~~~~~~~~V~sv~fsp---dg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~  212 (420)
T 4gga_A          138 LQLLQMEQPGEYISSVAWIK---EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIH  212 (420)
T ss_dssp             EEEEECCSTTCCEEEEEECT---TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEE
T ss_pred             EEEEEecCCCCcEEEEEECC---CCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCcee
Confidence            34444568899999999985   99999999999999999999999999999999999888774  67899999999999


Q ss_pred             EEeCCCCCe-eeee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCC---CCeEecCCcccEEEEEEeCCCCcEE
Q 024372           87 LWDALTGDE-KHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDA---PPREVGNSSGSIRTVAWLHSDQTIL  161 (268)
Q Consensus        87 iw~~~~~~~-~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~  161 (268)
                      +||...... ...+ .|...+..+.++|+++.+++++.|+.+++|+...++.   .......+.+.|.+++|+|.+..++
T Consensus       213 ~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~l  292 (420)
T 4gga_A          213 HHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVL  292 (420)
T ss_dssp             EEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEE
T ss_pred             EeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEE
Confidence            999876553 3333 4888999999999999999999999999999876542   2345567888999999999888877


Q ss_pred             EE--eeCCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEe---CCCeEEEEeCCCceeeeEEeCCCC-ceeeEE
Q 024372          162 SS--CTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA---DGSSVKFWDANHFGLVKGYNMPCN-TESASL  235 (268)
Q Consensus       162 ~~--~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~---~~~~v~~wd~~~~~~~~~~~~~~~-~~~~~~  235 (268)
                      ++  |+.|++|++||+++++++..+..+..+.++.++|+++.++++   .|+.|++||+.+++++..+..+.. +..+++
T Consensus       293 a~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~  372 (420)
T 4gga_A          293 ATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTM  372 (420)
T ss_dssp             EEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred             EEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEE
Confidence            65  457899999999999999999988899999999999887643   478999999999999988887654 456677


Q ss_pred             cCCCCCEEEeccCCCeEEEEECCCCc
Q 024372          236 EPKLGNIFIAGGEDMWVHVFDFHTGE  261 (268)
Q Consensus       236 ~~~~~~~~~~gs~d~~i~~wd~~~g~  261 (268)
                      +| +|++|++||.|+.|++||+...+
T Consensus       373 sp-dg~~l~S~s~D~tvriWdv~~~~  397 (420)
T 4gga_A          373 SP-DGATVASAAADETLRLWRCFELD  397 (420)
T ss_dssp             CT-TSSCEEEEETTTEEEEECCSCSS
T ss_pred             cC-CCCEEEEEecCCeEEEEECCCCC
Confidence            76 79999999999999999986544

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.2e-35  Score=249.24  Aligned_cols=247  Identities=26%  Similarity=0.377  Sum_probs=209.1

Q ss_pred             EEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEe
Q 024372           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (268)
Q Consensus        10 ~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~   89 (268)
                      ..+.+|..+|.+++|+|   +|++|++|+.|+.+++|+...+........+...+..+.+++++.++++++.|+.+++||
T Consensus        80 ~~l~~h~~~V~~~~~s~---dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d  156 (340)
T 4aow_A           80 RALRGHSHFVSDVVISS---DGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN  156 (340)
T ss_dssp             EEECCCSSCEEEEEECT---TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEeCCCCCEEEEEECC---CCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEE
Confidence            45679999999999985   899999999999999999999998888888999999999999999999999999999999


Q ss_pred             CCCCCeeeee--ccCCeEEEEEECCCC--CEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEee
Q 024372           90 ALTGDEKHSF--EHKHIVRACAFSEDT--HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT  165 (268)
Q Consensus        90 ~~~~~~~~~~--~~~~~v~~v~~~~~~--~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  165 (268)
                      ..........  .|...+..++|++++  .++++++.|+.|++||++.... ......|.+.|.+++|+|++. ++++++
T Consensus       157 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~-~~~~~~h~~~v~~~~~s~~~~-~l~s~s  234 (340)
T 4aow_A          157 TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL-KTNHIGHTGYLNTVTVSPDGS-LCASGG  234 (340)
T ss_dssp             TTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECTTSS-EEEEEE
T ss_pred             eCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCce-eeEecCCCCcEEEEEECCCCC-EEEEEe
Confidence            8765543332  477889999998754  6788999999999999976543 345556888999999998765 566777


Q ss_pred             CCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEeC----------CCCceeeEE
Q 024372          166 DSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNM----------PCNTESASL  235 (268)
Q Consensus       166 ~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~----------~~~~~~~~~  235 (268)
                      .|+.|++||+++.+++..+..+..+.++.++|++.+++++.|+.|++||++....+..+..          ...+.++++
T Consensus       235 ~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  314 (340)
T 4aow_A          235 KDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAW  314 (340)
T ss_dssp             TTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEE
T ss_pred             CCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEE
Confidence            8899999999999999999988899999999999999999999999999998776655532          223456677


Q ss_pred             cCCCCCEEEeccCCCeEEEEECCCCcE
Q 024372          236 EPKLGNIFIAGGEDMWVHVFDFHTGEQ  262 (268)
Q Consensus       236 ~~~~~~~~~~gs~d~~i~~wd~~~g~~  262 (268)
                      +| ++++|++|+.|+.|++||+++|.+
T Consensus       315 s~-dg~~l~sgs~Dg~v~iW~~~tGtr  340 (340)
T 4aow_A          315 SA-DGQTLFAGYTDNLVRVWQVTIGTR  340 (340)
T ss_dssp             CT-TSSEEEEEETTSCEEEEEEEC---
T ss_pred             CC-CCCEEEEEeCCCEEEEEeCCCcCC
Confidence            77 699999999999999999999863

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=2.7e-36  Score=280.96  Aligned_cols=256  Identities=19%  Similarity=0.229  Sum_probs=222.4

Q ss_pred             eecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEE
Q 024372            7 AVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAK   86 (268)
Q Consensus         7 ~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~   86 (268)
                      .....+.+|++.|.+++|+|   +|.+||+|+.|++|++||..+++.+.++.+|.++|.+++|+|++.++++++.|+.|+
T Consensus         4 ~~~~~~~~h~~~v~~i~~sp---~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~   80 (814)
T 3mkq_A            4 DIKKTFSNRSDRVKGIDFHP---TEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR   80 (814)
T ss_dssp             CCEEEEEEECSCEEEEEECS---SSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEE
T ss_pred             ccceeeecCCCceEEEEECC---CCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEE
Confidence            34456789999999999995   899999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEee
Q 024372           87 LWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT  165 (268)
Q Consensus        87 iw~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  165 (268)
                      +||+.++.....+. |...|.+++|+|+++.|++++.|+.|++||+..+.........|...+.+++|+|.++..+++++
T Consensus        81 vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~  160 (814)
T 3mkq_A           81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC  160 (814)
T ss_dssp             EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEE
T ss_pred             EEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEe
Confidence            99999999887775 88899999999999999999999999999997654444556678889999999995566777788


Q ss_pred             CCCeEEEEeCCCCceEEeecC-C-CCEEEEEECC--CCcEEEEe-CCCeEEEEeCCCceeeeEEeCCCC-ceeeEEcCCC
Q 024372          166 DSGGVRLWDARSGKIVQTLET-K-SPVTSAEVSR--DGRYITTA-DGSSVKFWDANHFGLVKGYNMPCN-TESASLEPKL  239 (268)
Q Consensus       166 ~d~~i~iwd~~~~~~~~~~~~-~-~~v~~~~~s~--~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~  239 (268)
                      .||.|++||+++++....+.. + ..+.+++|+|  ++.+++++ .++.|++||++....+..+..+.. +..+.++| +
T Consensus       161 ~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~  239 (814)
T 3mkq_A          161 LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP-T  239 (814)
T ss_dssp             TTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-S
T ss_pred             CCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-C
Confidence            889999999998887766653 2 6789999999  88887765 689999999999888888876544 45666666 6


Q ss_pred             CCEEEeccCCCeEEEEECCCCcEEeec
Q 024372          240 GNIFIAGGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       240 ~~~~~~gs~d~~i~~wd~~~g~~~~~~  266 (268)
                      +.++++|+.|+.|++||+.+++.+..+
T Consensus       240 ~~~l~~~~~dg~v~vwd~~~~~~~~~~  266 (814)
T 3mkq_A          240 LPIIISGSEDGTLKIWNSSTYKVEKTL  266 (814)
T ss_dssp             SSEEEEEETTSCEEEEETTTCSEEEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence            999999999999999999988877653

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=3.9e-37  Score=268.28  Aligned_cols=250  Identities=18%  Similarity=0.164  Sum_probs=195.4

Q ss_pred             eeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC--eEEEeeCccCcEEEEEecC-CCcEEEEeeCCCcEEEE
Q 024372           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDA-NALFSASGSADFTAKLW   88 (268)
Q Consensus        12 ~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~--~~~~~~~h~~~V~~~~~~~-~~~~l~s~s~D~~v~iw   88 (268)
                      ..+|...|++|+|+|.  ++++||+|+.||+|+|||..+++  .+..+.+|.+.|.+++|+| ++.+|+|||.|++|++|
T Consensus       115 ~~~~~~~V~~l~~~P~--~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iw  192 (435)
T 4e54_B          115 AAPFDRRATSLAWHPT--HPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ  192 (435)
T ss_dssp             EEECSSCEEEEEECSS--CTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred             CCCCCCCEEEEEEeCC--CCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence            4579999999999983  56799999999999999998775  4455678999999999997 67899999999999999


Q ss_pred             eCCCCCeeeeec---cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEee
Q 024372           89 DALTGDEKHSFE---HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT  165 (268)
Q Consensus        89 ~~~~~~~~~~~~---~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  165 (268)
                      |+.++.......   +...+.+++|+|++++|++|+.|+.|++||++..  ....+..|.+.|.+++|+|.+..++++++
T Consensus       193 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~--~~~~~~~h~~~v~~v~~~p~~~~~~~s~s  270 (435)
T 4e54_B          193 DFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK--ELWNLRMHKKKVTHVALNPCCDWFLATAS  270 (435)
T ss_dssp             ETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC--BCCCSBCCSSCEEEEEECTTCSSEEEEEE
T ss_pred             eccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc--eeEEEecccceEEeeeecCCCceEEEEec
Confidence            998765444333   2335778999999999999999999999998643  23344567889999999999888998999


Q ss_pred             CCCeEEEEeCCCCceEEee----cCCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCC-------Cceee
Q 024372          166 DSGGVRLWDARSGKIVQTL----ETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPC-------NTESA  233 (268)
Q Consensus       166 ~d~~i~iwd~~~~~~~~~~----~~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~-------~~~~~  233 (268)
                      .|+.|+|||+++.+....+    .+..+|.+++|+|+|++|++ +.|+.|++||++.+.....+..+.       .....
T Consensus       271 ~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (435)
T 4e54_B          271 VDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKA  350 (435)
T ss_dssp             TTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBC
T ss_pred             CcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEE
Confidence            9999999999987654333    35567999999999998875 578999999999877655443221       11223


Q ss_pred             EEcCCCCCEEEec------------cCCCeEEEEECCCCcEEeec
Q 024372          234 SLEPKLGNIFIAG------------GEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       234 ~~~~~~~~~~~~g------------s~d~~i~~wd~~~g~~~~~~  266 (268)
                      .+.+ .+.+++++            ..++.|++||..+|+.+...
T Consensus       351 ~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l  394 (435)
T 4e54_B          351 AWHP-RYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQL  394 (435)
T ss_dssp             EECS-SSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEE
T ss_pred             EEcC-CCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEE
Confidence            3333 23333333            34568999999999987653

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1e-37  Score=266.11  Aligned_cols=247  Identities=12%  Similarity=0.101  Sum_probs=195.7

Q ss_pred             eeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCC--CeEEEeeCccCcEEEEEecCCCcEEEEeeCCC
Q 024372            6 VAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG--DWIGTFEGHKGAVWSCCLDANALFSASGSADF   83 (268)
Q Consensus         6 ~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~--~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~   83 (268)
                      |+.|.++..|.++|++++|+|   +|++||+|+.|++|++|+..++  +.+..+.+|.+.|.+++|+|++.+|++++.|+
T Consensus         1 m~~~~~~~~~~~~v~~~~~s~---~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~   77 (377)
T 3dwl_C            1 MATSQVLHILPKPSYEHAFNS---QRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDR   77 (377)
T ss_dssp             -CCEEEEEECSSCCSCCEECS---SSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTS
T ss_pred             CCcceeEecCCCcEEEEEECC---CCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCC
Confidence            356677777899999999995   8999999999999999999988  78889999999999999999999999999999


Q ss_pred             cEEEEeCCCCC---e-eeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCC--CCeEecC-CcccEEEEEEeCC
Q 024372           84 TAKLWDALTGD---E-KHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDA--PPREVGN-SSGSIRTVAWLHS  156 (268)
Q Consensus        84 ~v~iw~~~~~~---~-~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~--~~~~~~~-~~~~v~~~~~~~~  156 (268)
                      +|++||+.++.   . .....|...|.+++|+|+++.|++++.|+.|++||++.+..  ....+.. |.+.+.+++|+|+
T Consensus        78 ~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  157 (377)
T 3dwl_C           78 NAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPN  157 (377)
T ss_dssp             SEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTT
T ss_pred             eEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCC
Confidence            99999998876   3 33345888999999999999999999999999999986542  2344545 8899999999987


Q ss_pred             CCcEEEEeeCCCeEEEEeCC------------------CCceEEeecCCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCC
Q 024372          157 DQTILSSCTDSGGVRLWDAR------------------SGKIVQTLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANH  217 (268)
Q Consensus       157 ~~~~~~~~~~d~~i~iwd~~------------------~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~  217 (268)
                      +. ++++++.|+.|++||++                  .++++..+.+...+.+++|+|++++|++ +.|+.|++||++.
T Consensus       158 ~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~  236 (377)
T 3dwl_C          158 NV-LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSA  236 (377)
T ss_dssp             SS-EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECS
T ss_pred             CC-EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence            65 56667778999999985                  3556666655667999999999998765 5789999999988


Q ss_pred             cee----eeEEeCCCC-ceeeEEcCCCCCEEEeccCCCeEEEEECC
Q 024372          218 FGL----VKGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (268)
Q Consensus       218 ~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~gs~d~~i~~wd~~  258 (268)
                      .+.    +..+..+.. +..+.+++ ++++|++|+.|+.+ +|+..
T Consensus       237 ~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          237 PEQPPRALITVKLSQLPLRSLLWAN-ESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             TTSCEEECCCEECSSSCEEEEEEEE-TTEEEEEESSSSEE-EECCC
T ss_pred             CCCcceeeEeecCCCCceEEEEEcC-CCCEEEEEcCCcEE-EEEeC
Confidence            766    666665544 56677777 68999999888766 66554

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-36  Score=261.37  Aligned_cols=250  Identities=17%  Similarity=0.269  Sum_probs=209.0

Q ss_pred             cEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC----CCeEEEeeCccCcEEEEEecCC-CcEEEEeeCCC
Q 024372            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET----GDWIGTFEGHKGAVWSCCLDAN-ALFSASGSADF   83 (268)
Q Consensus         9 ~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~----~~~~~~~~~h~~~V~~~~~~~~-~~~l~s~s~D~   83 (268)
                      ++....|...|.+++|+|   +|++|++|+.|+++++|+..+    .+.+..+.+|.+.|.+++|+|+ +.++++++.|+
T Consensus        60 ~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg  136 (416)
T 2pm9_A           60 PIASLQVDSKFNDLDWSH---NNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNG  136 (416)
T ss_dssp             CSCCCCCSSCEEEEEECS---SSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSS
T ss_pred             EEEEEecCCceEEEEECC---CCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCC
Confidence            444457999999999985   899999999999999999988    4588899999999999999998 88999999999


Q ss_pred             cEEEEeCCCCC------eeee----eccCCeEEEEEECCC-CCEEEEeeCCCeEEEEECCCCCCCCeEecCC------cc
Q 024372           84 TAKLWDALTGD------EKHS----FEHKHIVRACAFSED-THLLLTGGFEKILRIFDLNRPDAPPREVGNS------SG  146 (268)
Q Consensus        84 ~v~iw~~~~~~------~~~~----~~~~~~v~~v~~~~~-~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~------~~  146 (268)
                      .|++||+.++.      ....    ..|...|.+++|+|+ +.++++++.|+.|++||++.++. ......+      ..
T Consensus       137 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~  215 (416)
T 2pm9_A          137 EIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE-VIHLSYTSPNSGIKQ  215 (416)
T ss_dssp             CEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE-EEEECCCCCSSCCCC
T ss_pred             eEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc-ceEEeccccccccCC
Confidence            99999998876      3332    247788999999998 78999999999999999986543 2333333      67


Q ss_pred             cEEEEEEeCCCCcEEEEeeCCC---eEEEEeCCCC-ceEEeec--CCCCEEEEEECC-CCcEEEE-eCCCeEEEEeCCCc
Q 024372          147 SIRTVAWLHSDQTILSSCTDSG---GVRLWDARSG-KIVQTLE--TKSPVTSAEVSR-DGRYITT-ADGSSVKFWDANHF  218 (268)
Q Consensus       147 ~v~~~~~~~~~~~~~~~~~~d~---~i~iwd~~~~-~~~~~~~--~~~~v~~~~~s~-~g~~l~~-~~~~~v~~wd~~~~  218 (268)
                      .+.+++|+|++..++++++.|+   .|++||++++ +.+..+.  +...+.+++|+| +++++++ +.|+.|++||+++.
T Consensus       216 ~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~  295 (416)
T 2pm9_A          216 QLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA  295 (416)
T ss_dssp             CEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC
T ss_pred             ceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC
Confidence            8999999998877888888888   9999999986 5666665  556799999999 8887765 56899999999999


Q ss_pred             eeeeEEeCCC-CceeeEEcCCCCCEEEeccCCCeEEEEECCCCcE
Q 024372          219 GLVKGYNMPC-NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ  262 (268)
Q Consensus       219 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~  262 (268)
                      +.+..+..+. .+..+.++|+.+.+|++++.|+.|++||+.+++.
T Consensus       296 ~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~  340 (416)
T 2pm9_A          296 EQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTN  340 (416)
T ss_dssp             CEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCC
T ss_pred             ccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCC
Confidence            8888887654 4567778874338999999999999999987653

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.7e-35  Score=265.71  Aligned_cols=236  Identities=28%  Similarity=0.440  Sum_probs=200.3

Q ss_pred             EEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEe
Q 024372           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (268)
Q Consensus        10 ~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~   89 (268)
                      ..+.+|..+|.+++|+|   +|++|++|+.|+++++|+. +++++.++.+|...|.+++|+|++.++++++.|+.|++||
T Consensus       338 ~~~~~~~~~v~~~~~s~---~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~  413 (577)
T 2ymu_A          338 QTLTGHSSSVWGVAFSP---DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN  413 (577)
T ss_dssp             EEECCCSSCEEEEEECT---TSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EEEeCCCCCEEEEEECC---CCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEe
Confidence            44568999999999985   8999999999999999994 6788999999999999999999999999999999999999


Q ss_pred             CCCCCeeee-eccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCC
Q 024372           90 ALTGDEKHS-FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG  168 (268)
Q Consensus        90 ~~~~~~~~~-~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~  168 (268)
                      .. ++.... ..|...|.+++|+|+++.|++++.|+.+++||...  ........|...+.+++|+|++. ++++++.|+
T Consensus       414 ~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~--~~~~~~~~~~~~v~~~~~spd~~-~las~~~d~  489 (577)
T 2ymu_A          414 RN-GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVRGVAFSPDGQ-TIASASDDK  489 (577)
T ss_dssp             TT-CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS--CEEEEEECCSSCEEEEEECTTSC-EEEEEETTS
T ss_pred             CC-CCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC--CEEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCC
Confidence            64 444444 45888999999999999999999999999999743  23445567888999999998775 566667889


Q ss_pred             eEEEEeCCCCceEEeecC-CCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCCC-ceeeEEcCCCCCEEEe
Q 024372          169 GVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCN-TESASLEPKLGNIFIA  245 (268)
Q Consensus       169 ~i~iwd~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  245 (268)
                      .|++||. ++++++.+.. ...|.+++|+|+|++|++ +.|+.|++||. +.+++..+..+.. +..+.++| ++++|++
T Consensus       490 ~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~-dg~~l~s  566 (577)
T 2ymu_A          490 TVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DGQTIAS  566 (577)
T ss_dssp             EEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECT-TSSCEEE
T ss_pred             EEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcC-CCCEEEE
Confidence            9999995 6788888864 467999999999998876 57899999996 5667777776554 55677776 6999999


Q ss_pred             ccCCCeEEEEE
Q 024372          246 GGEDMWVHVFD  256 (268)
Q Consensus       246 gs~d~~i~~wd  256 (268)
                      ||.|+.|++||
T Consensus       567 ~~~D~~i~~Wd  577 (577)
T 2ymu_A          567 ASSDKTVKLWN  577 (577)
T ss_dssp             EETTSCEEEEC
T ss_pred             EeCCCEEEEeC
Confidence            99999999997

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=2.6e-35  Score=252.62  Aligned_cols=253  Identities=18%  Similarity=0.221  Sum_probs=203.9

Q ss_pred             cEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEee-------------CccCcEEEEEecC-CCc
Q 024372            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE-------------GHKGAVWSCCLDA-NAL   74 (268)
Q Consensus         9 ~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~-------------~h~~~V~~~~~~~-~~~   74 (268)
                      ...+.+|.++|++++|+|  .+|++|++|+.|++|++|+..+++....+.             +|...|.+++|+| ++.
T Consensus        36 ~~~~~~h~~~v~~~~~s~--~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  113 (408)
T 4a11_B           36 RDVERIHGGGINTLDIEP--VEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTG  113 (408)
T ss_dssp             EEECCCCSSCEEEEEECT--TTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTT
T ss_pred             eeeeeccCCcEEEEEEec--CCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCc
Confidence            345568999999999984  278999999999999999999887654443             5999999999999 777


Q ss_pred             EEEEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEEECCC---CCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEE
Q 024372           75 FSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSED---THLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTV  151 (268)
Q Consensus        75 ~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~---~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~  151 (268)
                      ++++++.|+.|++||+.++.....+.+...+.++.+++.   +.++++++.|+.+++||++.+.. ...+..|.+.+.++
T Consensus       114 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-~~~~~~~~~~v~~~  192 (408)
T 4a11_B          114 MFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC-SHILQGHRQEILAV  192 (408)
T ss_dssp             CEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC-CEEECCCCSCEEEE
T ss_pred             EEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce-eeeecCCCCcEEEE
Confidence            999999999999999999999998889999999999884   45999999999999999987643 45566688899999


Q ss_pred             EEeCCCCcEEEEeeCCCeEEEEeCCCCc-eEEee----------------cCCCCEEEEEECCCCcEEEE-eCCCeEEEE
Q 024372          152 AWLHSDQTILSSCTDSGGVRLWDARSGK-IVQTL----------------ETKSPVTSAEVSRDGRYITT-ADGSSVKFW  213 (268)
Q Consensus       152 ~~~~~~~~~~~~~~~d~~i~iwd~~~~~-~~~~~----------------~~~~~v~~~~~s~~g~~l~~-~~~~~v~~w  213 (268)
                      +|+|++..++++++.||.|++||+++++ ++..+                .+...+.+++|+|+++++++ +.|+.|++|
T Consensus       193 ~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  272 (408)
T 4a11_B          193 SWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLW  272 (408)
T ss_dssp             EECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             EECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEE
Confidence            9999988878888889999999998875 44443                23456999999999998765 568999999


Q ss_pred             eCCCcee-----------------------------------------------eeEEeCCC-CceeeEEcCCCCCEEEe
Q 024372          214 DANHFGL-----------------------------------------------VKGYNMPC-NTESASLEPKLGNIFIA  245 (268)
Q Consensus       214 d~~~~~~-----------------------------------------------~~~~~~~~-~~~~~~~~~~~~~~~~~  245 (268)
                      |+++.+.                                               +..+..+. .+..+.+++ ++++|++
T Consensus       273 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s  351 (408)
T 4a11_B          273 NSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQS-NFQELYS  351 (408)
T ss_dssp             ETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEET-TTTEEEE
T ss_pred             ECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcC-CCCEEEE
Confidence            9875432                                               22233222 345566776 6999999


Q ss_pred             ccCCCeEEEEECCCCcEEee
Q 024372          246 GGEDMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       246 gs~d~~i~~wd~~~g~~~~~  265 (268)
                      |+.|+.|++||+.+++++..
T Consensus       352 ~~~dg~i~iw~~~~~~~~~~  371 (408)
T 4a11_B          352 GSRDCNILAWVPSLYEPVPD  371 (408)
T ss_dssp             EETTSCEEEEEECC------
T ss_pred             ECCCCeEEEEeCCCCCccCC
Confidence            99999999999999887654

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=4.2e-36  Score=254.90  Aligned_cols=251  Identities=16%  Similarity=0.134  Sum_probs=203.9

Q ss_pred             ecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEE--eeCccCcEEEEEecCCCcEEEEeeCCCcE
Q 024372            8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGT--FEGHKGAVWSCCLDANALFSASGSADFTA   85 (268)
Q Consensus         8 ~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~--~~~h~~~V~~~~~~~~~~~l~s~s~D~~v   85 (268)
                      ....+.+|..+|.+++|+|   +|++|++++.|+++++||..+++....  +..|...|.+++|+|++.++++++.|+.|
T Consensus        44 ~~~~~~~h~~~v~~~~~~~---~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v  120 (372)
T 1k8k_C           44 QVHELKEHNGQVTGVDWAP---DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVI  120 (372)
T ss_dssp             EEEEEECCSSCEEEEEEET---TTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSE
T ss_pred             eeeeecCCCCcccEEEEeC---CCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEE
Confidence            5556678999999999996   889999999999999999998875544  46799999999999999999999999999


Q ss_pred             EEEeCCCCCe---eee--eccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCC-----------------CCCCeEecC
Q 024372           86 KLWDALTGDE---KHS--FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRP-----------------DAPPREVGN  143 (268)
Q Consensus        86 ~iw~~~~~~~---~~~--~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~-----------------~~~~~~~~~  143 (268)
                      ++||+.....   ...  ..|...|.+++|+|+++.+++++.|+.+++||++..                 ......+..
T Consensus       121 ~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (372)
T 1k8k_C          121 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS  200 (372)
T ss_dssp             EEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC
T ss_pred             EEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCC
Confidence            9999987763   222  246789999999999999999999999999996421                 122234446


Q ss_pred             CcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCC-CCEEEEEECCCCcEEEEeCCCeEEEEeCCC--ce-
Q 024372          144 SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITTADGSSVKFWDANH--FG-  219 (268)
Q Consensus       144 ~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~--~~-  219 (268)
                      |.+.+.+++|+|++. ++++++.|+.|++||+++++++..+..+ .++.+++|+|++++++++.|+.|++||++.  .. 
T Consensus       201 ~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~  279 (372)
T 1k8k_C          201 SCGWVHGVCFSANGS-RVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKL  279 (372)
T ss_dssp             CSSCEEEEEECSSSS-EEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEE
T ss_pred             CCCeEEEEEECCCCC-EEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceE
Confidence            778999999998775 5556677899999999999999888754 579999999999999999999999999976  21 


Q ss_pred             -ee------------------------------------eEE-eCC-CCceeeEEcCCCC---CEEEeccCCCeEEEEEC
Q 024372          220 -LV------------------------------------KGY-NMP-CNTESASLEPKLG---NIFIAGGEDMWVHVFDF  257 (268)
Q Consensus       220 -~~------------------------------------~~~-~~~-~~~~~~~~~~~~~---~~~~~gs~d~~i~~wd~  257 (268)
                       .+                                    ..+ ..+ ..+..+++++++|   .+|++|+.|+.|++||+
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~  359 (372)
T 1k8k_C          280 SFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV  359 (372)
T ss_dssp             EECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEH
T ss_pred             EEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEe
Confidence             11                                    111 122 2345566676677   99999999999999999


Q ss_pred             CCCcE
Q 024372          258 HTGEQ  262 (268)
Q Consensus       258 ~~g~~  262 (268)
                      .++++
T Consensus       360 ~~~~~  364 (372)
T 1k8k_C          360 RSLES  364 (372)
T ss_dssp             HHHHH
T ss_pred             cChhH
Confidence            87664

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.3e-35  Score=251.82  Aligned_cols=244  Identities=12%  Similarity=0.140  Sum_probs=205.7

Q ss_pred             EEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC--eEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEE
Q 024372           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKL   87 (268)
Q Consensus        10 ~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~--~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~i   87 (268)
                      .++..|.++|.+++|+|   +|++|++|+.|+.|++|+..+++  .+..+.+|...|.+++|+|++.++++++.|+.|++
T Consensus         2 ~~~~~~~~~i~~~~~s~---~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~v   78 (372)
T 1k8k_C            2 AYHSFLVEPISCHAWNK---DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYV   78 (372)
T ss_dssp             CEEESCSSCCCEEEECT---TSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred             ceecccCCCeEEEEECC---CCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEE
Confidence            34566999999999985   89999999999999999999987  88999999999999999999999999999999999


Q ss_pred             EeCCCCCeeee---eccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCC---CCeEecCCcccEEEEEEeCCCCcEE
Q 024372           88 WDALTGDEKHS---FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDA---PPREVGNSSGSIRTVAWLHSDQTIL  161 (268)
Q Consensus        88 w~~~~~~~~~~---~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~  161 (268)
                      ||+.+++....   ..|...|.+++|+|+++.|++++.|+.+++||++....   .......|...+.+++|+|++. ++
T Consensus        79 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l  157 (372)
T 1k8k_C           79 WTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV-LL  157 (372)
T ss_dssp             EEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS-EE
T ss_pred             EECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCC-EE
Confidence            99988774443   35788999999999999999999999999999876542   1122245678999999998765 56


Q ss_pred             EEeeCCCeEEEEeCC------------------CCceEEeec-CCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceee
Q 024372          162 SSCTDSGGVRLWDAR------------------SGKIVQTLE-TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLV  221 (268)
Q Consensus       162 ~~~~~d~~i~iwd~~------------------~~~~~~~~~-~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~  221 (268)
                      ++++.|+.|++||++                  +++++..+. +...+.+++|+|+++++++ +.|+.|++||+++.+++
T Consensus       158 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  237 (372)
T 1k8k_C          158 AAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAV  237 (372)
T ss_dssp             EEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEE
T ss_pred             EEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCcee
Confidence            666778999999954                  678888885 4467999999999988765 57899999999998888


Q ss_pred             eEEeCCC-CceeeEEcCCCCCEEEeccCCCeEEEEECCC
Q 024372          222 KGYNMPC-NTESASLEPKLGNIFIAGGEDMWVHVFDFHT  259 (268)
Q Consensus       222 ~~~~~~~-~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~  259 (268)
                      ..+..+. ....+.+.+ ++.++++| .|+.|++||+.+
T Consensus       238 ~~~~~~~~~v~~~~~~~-~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          238 ATLASETLPLLAVTFIT-ESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             EEEECSSCCEEEEEEEE-TTEEEEEE-TTSSCEEEEEET
T ss_pred             EEEccCCCCeEEEEEec-CCCEEEEE-eCCeEEEEEccC
Confidence            8887655 456677776 58877777 899999999987

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.1e-35  Score=242.40  Aligned_cols=247  Identities=17%  Similarity=0.254  Sum_probs=205.8

Q ss_pred             eecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEE
Q 024372            7 AVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAK   86 (268)
Q Consensus         7 ~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~   86 (268)
                      .....+.+|.++|++++| |   ++.+|++|+.|++|++||..+++....+..|.+.|.+++|+|++.++++++.|+.++
T Consensus         9 ~~~~~l~~h~~~v~~~~~-~---~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~   84 (313)
T 3odt_A            9 QLSATLKGHDQDVRDVVA-V---DDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMIN   84 (313)
T ss_dssp             EEEEEECCCSSCEEEEEE-E---ETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred             HHHHHhhCCCCCcEEEEe-c---CCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEE
Confidence            344556799999999999 5   788999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCC---eeeee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEE
Q 024372           87 LWDALTGD---EKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILS  162 (268)
Q Consensus        87 iw~~~~~~---~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  162 (268)
                      +|++....   ....+ .|...|.++.|  +++.+++++.|+.+++||..   ........|...+.++.+.+.++.+++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~  159 (313)
T 3odt_A           85 GVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKEG---SLVYNLQAHNASVWDAKVVSFSENKFL  159 (313)
T ss_dssp             EEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETT---EEEEEEECCSSCEEEEEEEETTTTEEE
T ss_pred             EEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcCC---cEEEecccCCCceeEEEEccCCCCEEE
Confidence            99987653   23333 47889999999  57799999999999999932   233455567889999999985666777


Q ss_pred             EeeCCCeEEEEeCCCCceEEeec--CCCCEEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEeCCCC-ceeeEEcCCC
Q 024372          163 SCTDSGGVRLWDARSGKIVQTLE--TKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCN-TESASLEPKL  239 (268)
Q Consensus       163 ~~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~  239 (268)
                      +++.|+.|++||  .++.+..+.  +...+.+++++|++.+++++.++.|++||+++.+.+..+..+.. ...+.+.+ +
T Consensus       160 ~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~  236 (313)
T 3odt_A          160 TASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLP-N  236 (313)
T ss_dssp             EEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-T
T ss_pred             EEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEec-C
Confidence            888889999999  445555554  55679999999999977778899999999999988888875544 55667776 4


Q ss_pred             CCEEEeccCCCeEEEEECCCCcEEeec
Q 024372          240 GNIFIAGGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       240 ~~~~~~gs~d~~i~~wd~~~g~~~~~~  266 (268)
                      + .|++|+.|+.|++||+.+++.+..+
T Consensus       237 ~-~l~~~~~dg~v~iwd~~~~~~~~~~  262 (313)
T 3odt_A          237 G-DIVSCGEDRTVRIWSKENGSLKQVI  262 (313)
T ss_dssp             S-CEEEEETTSEEEEECTTTCCEEEEE
T ss_pred             C-CEEEEecCCEEEEEECCCCceeEEE
Confidence            6 5899999999999999999887654

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.2e-36  Score=260.57  Aligned_cols=247  Identities=14%  Similarity=0.167  Sum_probs=194.5

Q ss_pred             eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC---CC---eEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEE
Q 024372           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET---GD---WIGTFEGHKGAVWSCCLDANALFSASGSADFTAK   86 (268)
Q Consensus        13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~---~~---~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~   86 (268)
                      .+|+++|++++|+|  .+|.+|++|+.|++|++||..+   +.   ....+ +|.+.|.+++|+|++.++++++.|++|+
T Consensus        60 ~~h~~~V~~~~~s~--~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~  136 (437)
T 3gre_A           60 ENEPNSITSSAVSP--GETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQII  136 (437)
T ss_dssp             TTTTSCEEEEEEEC--SSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             cCCCCceEEEEECC--CCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEE
Confidence            68999999999994  1788999999999999999876   43   23333 4999999999999999999999999999


Q ss_pred             EEeCC---CCCeeeeec-------------cCCeEEEEE--ECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecC--Ccc
Q 024372           87 LWDAL---TGDEKHSFE-------------HKHIVRACA--FSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN--SSG  146 (268)
Q Consensus        87 iw~~~---~~~~~~~~~-------------~~~~v~~v~--~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~--~~~  146 (268)
                      +||+.   +++......             +...+.++.  ++++++.+++|+.|+.|++||+++++.. ..+..  |.+
T Consensus       137 vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~h~~  215 (437)
T 3gre_A          137 VLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERL-QIIENSPRHG  215 (437)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEE-EEEECCGGGC
T ss_pred             EEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeee-EEEccCCCCC
Confidence            99994   444433221             344566666  5678999999999999999999876543 33333  778


Q ss_pred             cEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeec--CCCCEEEEEEC----CCCcEEEEe-CCCeEEEEeCCCce
Q 024372          147 SIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE--TKSPVTSAEVS----RDGRYITTA-DGSSVKFWDANHFG  219 (268)
Q Consensus       147 ~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~s----~~g~~l~~~-~~~~v~~wd~~~~~  219 (268)
                      .+.+++|+|++. ++++++.||.|++||+++++++..+.  ++.++.+++++    |++++++++ .|+.|++||+++.+
T Consensus       216 ~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~  294 (437)
T 3gre_A          216 AVSSICIDEECC-VLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGH  294 (437)
T ss_dssp             CEEEEEECTTSC-EEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTE
T ss_pred             ceEEEEECCCCC-EEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCc
Confidence            999999988754 56677788999999999999998774  45679999665    467787765 67899999999988


Q ss_pred             eeeEEeCCC---------------------------CceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEeec
Q 024372          220 LVKGYNMPC---------------------------NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       220 ~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~~  266 (268)
                      ++..+..+.                           .+..+++.  ++++|++|+.|+.|++||+.+++.+..+
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~--~~~~l~s~~~d~~i~~wd~~~~~~~~~~  366 (437)
T 3gre_A          295 CQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS--NDKILLTDEATSSIVMFSLNELSSSKAV  366 (437)
T ss_dssp             EEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE--TTEEEEEEGGGTEEEEEETTCGGGCEEE
T ss_pred             EEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC--CceEEEecCCCCeEEEEECCCcccceEE
Confidence            887776331                           12334454  4689999999999999999988866543

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.7e-37  Score=272.23  Aligned_cols=245  Identities=14%  Similarity=0.116  Sum_probs=188.0

Q ss_pred             eecCCCeeeEEEecCCCC------CcEEEE-------------------EeCCCCeEEeeCCCCCe----EEEeeCccCc
Q 024372           13 HGHSRPVVDLFYSPITPD------GFFLVS-------------------ASKDSSPMLRNGETGDW----IGTFEGHKGA   63 (268)
Q Consensus        13 ~~h~~~v~~~~f~~~~~d------g~~l~s-------------------~s~d~~i~iw~~~~~~~----~~~~~~h~~~   63 (268)
                      ..+.++|.+++|+|..++      +++||+                   ++.|++|+||+..+++.    ..++.+|.+.
T Consensus       130 ~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~  209 (524)
T 2j04_B          130 YNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGE  209 (524)
T ss_dssp             EECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCS
T ss_pred             EECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCc
Confidence            346788999999885311      156655                   55788999999988764    2456778899


Q ss_pred             EEEEEecCC------CcEEEEeeCCCcEEEEeCCCCCee-----------eee-ccCCeEEEEEECCCCCEEEEeeCCCe
Q 024372           64 VWSCCLDAN------ALFSASGSADFTAKLWDALTGDEK-----------HSF-EHKHIVRACAFSEDTHLLLTGGFEKI  125 (268)
Q Consensus        64 V~~~~~~~~------~~~l~s~s~D~~v~iw~~~~~~~~-----------~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~  125 (268)
                      |..++|+|+      +.+||+++.|++|++||+..+...           ..+ .|...|.+++|++++ .|++|+.|++
T Consensus       210 V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~Dgt  288 (524)
T 2j04_B          210 VWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGF  288 (524)
T ss_dssp             EEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSE
T ss_pred             EEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCE
Confidence            999999986      579999999999999999766421           122 377889999999864 8999999999


Q ss_pred             EEEEECCCCCCCCeEecCCcccEEEEE--EeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCC---CCEEEEEECCCCc
Q 024372          126 LRIFDLNRPDAPPREVGNSSGSIRTVA--WLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK---SPVTSAEVSRDGR  200 (268)
Q Consensus       126 i~~~d~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~---~~v~~~~~s~~g~  200 (268)
                      |++||++++.........|.+.|.+++  |.+++..++++++.|++|+|||+++++++.++..+   ..+.+++|+|++.
T Consensus       289 V~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~  368 (524)
T 2j04_B          289 VAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIY  368 (524)
T ss_dssp             EEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTT
T ss_pred             EEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcC
Confidence            999999866545555667889999994  44433378888999999999999998876555432   2478899999998


Q ss_pred             EEEE-eCCCeEEEEeCCCceeeeEEeCCC-CceeeEEcCCCCCEEEeccCCCeEEEEECCC
Q 024372          201 YITT-ADGSSVKFWDANHFGLVKGYNMPC-NTESASLEPKLGNIFIAGGEDMWVHVFDFHT  259 (268)
Q Consensus       201 ~l~~-~~~~~v~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~  259 (268)
                      .+++ +.|++|++||++...++.++..+. .+.+++++| ++.+|++||.|+.|++||+..
T Consensus       369 ~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp-~g~~l~Sgs~Dgtv~lwd~~~  428 (524)
T 2j04_B          369 SYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSR-LHPMVLAGSADGSLIITNAAR  428 (524)
T ss_dssp             EEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCS-SCCBCEEEETTTEEECCBSCS
T ss_pred             eEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCC-CCCeEEEEECCCEEEEEechH
Confidence            7765 467899999999887766665544 456777776 699999999999999999753

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=7.2e-36  Score=257.95  Aligned_cols=246  Identities=15%  Similarity=0.194  Sum_probs=195.6

Q ss_pred             cEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEE
Q 024372            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLW   88 (268)
Q Consensus         9 ~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw   88 (268)
                      ...+.+|.++|++++|+|   +|++|++|+.|++|++||+.+++.+..+.+|.+.|.+++|+|++.++++++.|++|++|
T Consensus       132 ~~~~~~h~~~v~~~~~~~---~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iw  208 (420)
T 3vl1_A          132 REIDQAHVSEITKLKFFP---SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLW  208 (420)
T ss_dssp             EEETTSSSSCEEEEEECT---TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred             eeecccccCccEEEEECC---CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEe
Confidence            334468999999999985   88999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCeeeeec----cCCeE---------------------EEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecC
Q 024372           89 DALTGDEKHSFE----HKHIV---------------------RACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN  143 (268)
Q Consensus        89 ~~~~~~~~~~~~----~~~~v---------------------~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~  143 (268)
                      |+.+++....+.    +...+                     .+++|+|+++++++|+.|+.|++||++.+.........
T Consensus       209 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  288 (420)
T 3vl1_A          209 ECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSK  288 (420)
T ss_dssp             ETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCT
T ss_pred             ECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccc
Confidence            999988877764    23334                     44556889999999999999999999876544444455


Q ss_pred             CcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCce-EEeec--CCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCce
Q 024372          144 SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI-VQTLE--TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFG  219 (268)
Q Consensus       144 ~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~-~~~~~--~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~  219 (268)
                      |...+.+++|+|++..++++++.||.|++||+++++. +..+.  +...+.++.+ |+++++++ +.|+.|++||+....
T Consensus       289 ~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~  367 (420)
T 3vl1_A          289 FTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPE  367 (420)
T ss_dssp             TSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTT
T ss_pred             cCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCC
Confidence            7789999999998886777888889999999998754 55554  3455777755 56666665 568999999987631


Q ss_pred             ee---------eEE-eCCCCceeeEEcCCCCC---EEEeccCCCeEEEEECCC
Q 024372          220 LV---------KGY-NMPCNTESASLEPKLGN---IFIAGGEDMWVHVFDFHT  259 (268)
Q Consensus       220 ~~---------~~~-~~~~~~~~~~~~~~~~~---~~~~gs~d~~i~~wd~~~  259 (268)
                      ..         ..+ ........+++.+ +++   .+++++.++.+.+|++.+
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~g~l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          368 SERPAIEFETPTFLVSNDDAVSQFCYVS-DDESNGEVLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             CCSCEECTTSCEEECCSSCCCCEEEEEC-CSSSSCEEEEEETTTEEEEEESCC
T ss_pred             CCccceeccCccEEccCCcceEEEEEcc-CCCCcceEEEEcCCceEEEEeccC
Confidence            11         111 2233456677777 566   677777889999999863

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2.9e-34  Score=239.99  Aligned_cols=237  Identities=15%  Similarity=0.197  Sum_probs=205.0

Q ss_pred             ecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC--eEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCC
Q 024372           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL   91 (268)
Q Consensus        14 ~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~--~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~   91 (268)
                      +|..+|.+++|+|   +|++|++++.|+++++|+..+++  ....+.+|...|.+++|+|++.++++++.|+.|++||+.
T Consensus        95 ~~~~~v~~~~~~~---~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~  171 (337)
T 1gxr_A           95 NRDNYIRSCKLLP---DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH  171 (337)
T ss_dssp             CTTSBEEEEEECT---TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             CCCCcEEEEEEcC---CCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCC
Confidence            7999999999985   89999999999999999999887  677888999999999999999999999999999999999


Q ss_pred             CCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeE
Q 024372           92 TGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (268)
Q Consensus        92 ~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i  170 (268)
                      +++....+. |...+.+++|+|+++.+++++.|+.|++||++.++.. ... .+...+.+++|+|++.. +++++.++.|
T Consensus       172 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~-~~~-~~~~~v~~~~~s~~~~~-l~~~~~~~~i  248 (337)
T 1gxr_A          172 NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQL-QQH-DFTSQIFSLGYCPTGEW-LAVGMESSNV  248 (337)
T ss_dssp             TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE-EEE-ECSSCEEEEEECTTSSE-EEEEETTSCE
T ss_pred             CCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceE-eee-cCCCceEEEEECCCCCE-EEEEcCCCcE
Confidence            988877775 7889999999999999999999999999999765422 222 35678999999988765 5556677999


Q ss_pred             EEEeCCCCceEEeecCCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCC
Q 024372          171 RLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGED  249 (268)
Q Consensus       171 ~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d  249 (268)
                      ++||+++++......+..++.+++|+|+++++++ +.++.|++||++..+.+...........+.+.+ ++++|++++.|
T Consensus       249 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d  327 (337)
T 1gxr_A          249 EVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISV-DDKYIVTGSGD  327 (337)
T ss_dssp             EEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECT-TSCEEEEEETT
T ss_pred             EEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECC-CCCEEEEecCC
Confidence            9999999887766666778999999999998776 468999999999988776666666677777877 69999999999


Q ss_pred             CeEEEEEC
Q 024372          250 MWVHVFDF  257 (268)
Q Consensus       250 ~~i~~wd~  257 (268)
                      +.|++||+
T Consensus       328 g~i~iw~~  335 (337)
T 1gxr_A          328 KKATVYEV  335 (337)
T ss_dssp             SCEEEEEE
T ss_pred             CeEEEEEE
Confidence            99999996

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2.1e-34  Score=252.31  Aligned_cols=246  Identities=18%  Similarity=0.300  Sum_probs=204.3

Q ss_pred             ecEEeeecCCCe-eeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEE
Q 024372            8 VPLVCHGHSRPV-VDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAK   86 (268)
Q Consensus         8 ~~~~~~~h~~~v-~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~   86 (268)
                      ....+.+|...| .++.|+     +++|++|+.|++|++||..+++.+.++.+|.+.|.+++|++++ ++++|+.|++|+
T Consensus       113 ~~~~l~~h~~~v~~~~~~~-----~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~  186 (464)
T 3v7d_B          113 QRTTLRGHMTSVITCLQFE-----DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVR  186 (464)
T ss_dssp             EEEEEECCSSSCEEEEEEE-----TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEE
T ss_pred             ceEEEcCCCCCcEEEEEEC-----CCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEE
Confidence            445678999885 566663     5699999999999999999999999999999999999999988 889999999999


Q ss_pred             EEeCCCCCeeeeec-cCCeEEEEEEC--CCCCEEEEeeCCCeEEEEECCCCCCC----------------------CeEe
Q 024372           87 LWDALTGDEKHSFE-HKHIVRACAFS--EDTHLLLTGGFEKILRIFDLNRPDAP----------------------PREV  141 (268)
Q Consensus        87 iw~~~~~~~~~~~~-~~~~v~~v~~~--~~~~~l~s~~~d~~i~~~d~~~~~~~----------------------~~~~  141 (268)
                      +||+.++.....+. |...|.+++|+  ++++.+++|+.|+.|++||++.....                      ....
T Consensus       187 vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (464)
T 3v7d_B          187 VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL  266 (464)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEE
T ss_pred             EEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEc
Confidence            99999998888776 88899999998  57789999999999999999765432                      1234


Q ss_pred             cCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecC-CCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCce
Q 024372          142 GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFG  219 (268)
Q Consensus       142 ~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~  219 (268)
                      ..|...+.++.  +++ .++++++.|+.|++||+++++++..+.. ...+.+++++|+++++++ +.|+.|++||+++.+
T Consensus       267 ~~~~~~v~~~~--~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~  343 (464)
T 3v7d_B          267 RGHMASVRTVS--GHG-NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE  343 (464)
T ss_dssp             CCCSSCEEEEE--EET-TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred             cCccceEEEEc--CCC-CEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Confidence            45667777764  333 4666777889999999999999998874 467999999999988775 578999999999999


Q ss_pred             eeeEEeCCCCce-eeEEcCCCCCEEEeccCCCeEEEEECCCCcEEee
Q 024372          220 LVKGYNMPCNTE-SASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       220 ~~~~~~~~~~~~-~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~  265 (268)
                      ++..+..+.... .+.+   ++.+|++|+.|+.|++||+.+++....
T Consensus       344 ~~~~~~~h~~~v~~~~~---~~~~l~s~s~dg~v~vwd~~~~~~~~~  387 (464)
T 3v7d_B          344 LMYTLQGHTALVGLLRL---SDKFLVSAAADGSIRGWDANDYSRKFS  387 (464)
T ss_dssp             EEEEECCCSSCEEEEEE---CSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             EEEEEeCCCCcEEEEEE---cCCEEEEEeCCCcEEEEECCCCceeee
Confidence            888887655543 3443   268999999999999999988776543

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=4.2e-36  Score=254.00  Aligned_cols=241  Identities=15%  Similarity=0.179  Sum_probs=198.3

Q ss_pred             cCCCeeeEEEecCC-CCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecC-CCcEEEEeeCCCcEEEEeCCC
Q 024372           15 HSRPVVDLFYSPIT-PDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDA-NALFSASGSADFTAKLWDALT   92 (268)
Q Consensus        15 h~~~v~~~~f~~~~-~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~-~~~~l~s~s~D~~v~iw~~~~   92 (268)
                      |.+.|.+++|+|.. ++|.+|++|+.|++|++||..+++.+..+.+|...|.+++|+| ++.++++++.|+.|++||+.+
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  147 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT  147 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec
Confidence            77889999999842 2278999999999999999999999999999999999999999 899999999999999999999


Q ss_pred             CCeeeee----ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCC---------------------------eEe
Q 024372           93 GDEKHSF----EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP---------------------------REV  141 (268)
Q Consensus        93 ~~~~~~~----~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~---------------------------~~~  141 (268)
                      ++....+    .|...|.+++|+|+++.|++++.|+.|++||++.++...                           ...
T Consensus       148 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (366)
T 3k26_A          148 DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTR  227 (366)
T ss_dssp             TEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEEC
T ss_pred             CeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccc
Confidence            9888876    588899999999999999999999999999987532110                           111


Q ss_pred             cCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCce--------------EEeec-CCCCEEEEEECCC--CcEEEE
Q 024372          142 GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI--------------VQTLE-TKSPVTSAEVSRD--GRYITT  204 (268)
Q Consensus       142 ~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~--------------~~~~~-~~~~v~~~~~s~~--g~~l~~  204 (268)
                      ..|.+.+.+++|+  + .++++++.|+.|++||+++++.              +..+. +...+.+++|+|+  +++|++
T Consensus       228 ~~~~~~v~~~~~~--~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~  304 (366)
T 3k26_A          228 DIHRNYVDCVRWL--G-DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLAL  304 (366)
T ss_dssp             SSCSSCCCEEEEE--T-TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEE
T ss_pred             cCCcceEEEEEEc--C-CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEE
Confidence            1277889999998  3 3677777889999999988754              55554 3456889999999  999886


Q ss_pred             e-CCCeEEEEeCCCceee----eEEeCC---CCceeeEEcCCCCCEEEeccCCCeEEEEECCC
Q 024372          205 A-DGSSVKFWDANHFGLV----KGYNMP---CNTESASLEPKLGNIFIAGGEDMWVHVFDFHT  259 (268)
Q Consensus       205 ~-~~~~v~~wd~~~~~~~----~~~~~~---~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~  259 (268)
                      + .|+.|++||++..+..    ..+..+   ..+..+++++ ++++|++|+.|+.|++||+.+
T Consensus       305 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          305 GNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSR-DSSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             ECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECT-TSSEEEEEETTSEEEEEEC--
T ss_pred             EecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCC-CCCeEEEEeCCCEEEEEEecC
Confidence            5 6899999999886533    345443   4456677777 699999999999999999853

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-34  Score=249.15  Aligned_cols=250  Identities=16%  Similarity=0.244  Sum_probs=202.5

Q ss_pred             eeecEEeeecCCCeeeEEEecCCCCCc-EEEEEeCCCCeEEeeC----CCCC------eEEEeeC----------ccCcE
Q 024372            6 VAVPLVCHGHSRPVVDLFYSPITPDGF-FLVSASKDSSPMLRNG----ETGD------WIGTFEG----------HKGAV   64 (268)
Q Consensus         6 ~~~~~~~~~h~~~v~~~~f~~~~~dg~-~l~s~s~d~~i~iw~~----~~~~------~~~~~~~----------h~~~V   64 (268)
                      ..+.+..+.|.++|++++|+|   +|. +||+|+.|+.+++|+.    .+++      ....+..          |.+.|
T Consensus        35 ~~~~~~~~~~~~~v~~~~~s~---~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  111 (425)
T 1r5m_A           35 FVKILKEIVKLDNIVSSTWNP---LDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQV  111 (425)
T ss_dssp             CCEECEEEEECSCCSEEEECS---SCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCE
T ss_pred             hhhheeeeeccCceEEEEECC---CCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCce
Confidence            344444567889999999995   888 9999999999999999    8888      4555654          78899


Q ss_pred             EEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCC-------
Q 024372           65 WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDA-------  136 (268)
Q Consensus        65 ~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~-------  136 (268)
                      .+++|+|++.+|++++.|+.|++|| .++.....+. |...|.+++|+|+++.|++++.|+.+++||+.++..       
T Consensus       112 ~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  190 (425)
T 1r5m_A          112 TCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELK  190 (425)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC
T ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeecc
Confidence            9999999999999999999999999 5555555554 888999999999999999999999999999864321       


Q ss_pred             ------------------------------------------------CCeEecCCcccEEEEEEeCCCCcEEEEeeCCC
Q 024372          137 ------------------------------------------------PPREVGNSSGSIRTVAWLHSDQTILSSCTDSG  168 (268)
Q Consensus       137 ------------------------------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~  168 (268)
                                                                      .......|...+.+++|+|++. ++++++.|+
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~  269 (425)
T 1r5m_A          191 ETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNK-LLLSASDDG  269 (425)
T ss_dssp             ---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTT-EEEEEETTS
T ss_pred             ccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCC-EEEEEcCCC
Confidence                                                            1112334667899999998776 555667789


Q ss_pred             eEEEEeCCCCceEEeec-CCCCEEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEeCCC-CceeeEEcCCCCCEEEec
Q 024372          169 GVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPC-NTESASLEPKLGNIFIAG  246 (268)
Q Consensus       169 ~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g  246 (268)
                      .|++||+++++.+..+. +...+.+++|+|++.+++++.++.|++||+++.+.+..+..+. .+..+.+++ ++++|++|
T Consensus       270 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~  348 (425)
T 1r5m_A          270 TLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQ-DGQKYAVA  348 (425)
T ss_dssp             CEEEECSSSBSCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECT-TSSEEEEE
T ss_pred             EEEEEECCCCccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcC-CCCEEEEE
Confidence            99999999999888886 4567999999999944556789999999999998888887644 455667776 69999999


Q ss_pred             cCCCeEEEEECCCCc
Q 024372          247 GEDMWVHVFDFHTGE  261 (268)
Q Consensus       247 s~d~~i~~wd~~~g~  261 (268)
                      +.|+.|++||+.+++
T Consensus       349 ~~dg~i~i~~~~~~~  363 (425)
T 1r5m_A          349 FMDGQVNVYDLKKLN  363 (425)
T ss_dssp             ETTSCEEEEECHHHH
T ss_pred             ECCCeEEEEECCCCc
Confidence            999999999998887

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.4e-35  Score=252.68  Aligned_cols=247  Identities=16%  Similarity=0.164  Sum_probs=204.9

Q ss_pred             ecEEeeecCCCeeeEEEecCCCC----C---cEEEEEeCCCCeEEeeCCCCCe-----EEEeeCc-----cCcEEEEEec
Q 024372            8 VPLVCHGHSRPVVDLFYSPITPD----G---FFLVSASKDSSPMLRNGETGDW-----IGTFEGH-----KGAVWSCCLD   70 (268)
Q Consensus         8 ~~~~~~~h~~~v~~~~f~~~~~d----g---~~l~s~s~d~~i~iw~~~~~~~-----~~~~~~h-----~~~V~~~~~~   70 (268)
                      ....+.+|..+|.+++|+|   +    |   .+|++++.|++|++|+..+++.     +..+.+|     ...|.+++|+
T Consensus        54 ~~~~~~~h~~~v~~~~~~~---~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  130 (397)
T 1sq9_A           54 KSYSHFVHKSGLHHVDVLQ---AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWG  130 (397)
T ss_dssp             GEEEEECCTTCEEEEEEEE---EEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEE
T ss_pred             cceEEecCCCcEEEEEEec---ccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEe
Confidence            4556679999999999996   6    8   9999999999999999999887     8889999     5999999999


Q ss_pred             ----CCCcE-EEEeeCCCcEEEEeCCC------CCeee-----ee--------ccCCeEEEEEECCCCCEEEEeeCCCeE
Q 024372           71 ----ANALF-SASGSADFTAKLWDALT------GDEKH-----SF--------EHKHIVRACAFSEDTHLLLTGGFEKIL  126 (268)
Q Consensus        71 ----~~~~~-l~s~s~D~~v~iw~~~~------~~~~~-----~~--------~~~~~v~~v~~~~~~~~l~s~~~d~~i  126 (268)
                          |++.+ +++++.|+.|++||+.+      +....     .+        .|...|.+++|+|++ .+++++.|+.|
T Consensus       131 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i  209 (397)
T 1sq9_A          131 ASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTV  209 (397)
T ss_dssp             CCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEE
T ss_pred             eccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcE
Confidence                99999 99999999999999987      55443     44        257789999999999 99999999999


Q ss_pred             EEEECCCCCCCCeEecC---C---cccEEEEEEeCCCCcEEEEeeCC---CeEEEEeCCCCceEEeec------------
Q 024372          127 RIFDLNRPDAPPREVGN---S---SGSIRTVAWLHSDQTILSSCTDS---GGVRLWDARSGKIVQTLE------------  185 (268)
Q Consensus       127 ~~~d~~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~~~~~~~~d---~~i~iwd~~~~~~~~~~~------------  185 (268)
                      ++||++.... ...+..   |   ...+.+++|+|++. ++++++.|   +.|++||+++++.+..+.            
T Consensus       210 ~i~d~~~~~~-~~~~~~~~~h~~~~~~i~~i~~~~~~~-~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  287 (397)
T 1sq9_A          210 QISELSTLRP-LYNFESQHSMINNSNSIRSVKFSPQGS-LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGE  287 (397)
T ss_dssp             EEEETTTTEE-EEEEECCC---CCCCCEEEEEECSSTT-EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CC
T ss_pred             EEEECCCCce-eEEEeccccccccCCccceEEECCCCC-EEEEEecCCCCceEEEEECCCCcccceeccCcccccccccc
Confidence            9999976542 344445   6   78999999998765 55566777   899999999999988886            


Q ss_pred             --CCCCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEe------C----------------CCCceeeEEcCCCC
Q 024372          186 --TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYN------M----------------PCNTESASLEPKLG  240 (268)
Q Consensus       186 --~~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~------~----------------~~~~~~~~~~~~~~  240 (268)
                        +...+.+++|+|++++|+++ .|+.|++||++..+++..+.      .                ...+..+.+.+ ++
T Consensus       288 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~-~g  366 (397)
T 1sq9_A          288 FAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLK-KG  366 (397)
T ss_dssp             BSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEEC-TT
T ss_pred             cccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecc-cc
Confidence              45679999999999988764 68999999999999888887      4                33456777777 45


Q ss_pred             ----------CEEEeccCCCeEEEEECCCCc
Q 024372          241 ----------NIFIAGGEDMWVHVFDFHTGE  261 (268)
Q Consensus       241 ----------~~~~~gs~d~~i~~wd~~~g~  261 (268)
                                ++|++|+.|+.|++||+++|+
T Consensus       367 ~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          367 WRSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             TSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             ccccccccccceEEEecCCCcEEEEEcCCCC
Confidence                      799999999999999998874

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=5.4e-35  Score=246.53  Aligned_cols=245  Identities=18%  Similarity=0.247  Sum_probs=195.6

Q ss_pred             eeecCCCeeeEEEecCCCCC-cEEEEEeC---CCCeEEeeCCCCCeEEEe-eCccCcEEEEEecCC---CcEEEEeeCCC
Q 024372           12 CHGHSRPVVDLFYSPITPDG-FFLVSASK---DSSPMLRNGETGDWIGTF-EGHKGAVWSCCLDAN---ALFSASGSADF   83 (268)
Q Consensus        12 ~~~h~~~v~~~~f~~~~~dg-~~l~s~s~---d~~i~iw~~~~~~~~~~~-~~h~~~V~~~~~~~~---~~~l~s~s~D~   83 (268)
                      +.+|.++|.+++|+|   +| .++++|+.   |+++++|+..+++..... .+|..+|.+++|+|+   +.++++|+.|+
T Consensus        14 ~~~h~~~v~~~~~~p---~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg   90 (357)
T 3i2n_A           14 QKGFNYTVFDCKWVP---CSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG   90 (357)
T ss_dssp             EEECSSCEEEEEECT---TSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred             ccCCCCceEEEEEcC---CCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence            358999999999996   66 45566766   999999999999876444 379999999999998   68999999999


Q ss_pred             cEEEEeCCCCC-eeeee-ccCCeEEEEE------ECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcc----cEEEE
Q 024372           84 TAKLWDALTGD-EKHSF-EHKHIVRACA------FSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSG----SIRTV  151 (268)
Q Consensus        84 ~v~iw~~~~~~-~~~~~-~~~~~v~~v~------~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~----~v~~~  151 (268)
                      .|++||+.++. ....+ .|...|.++.      |+|+++.|++++.|+.|++||++.+.........+.+    .+.++
T Consensus        91 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~  170 (357)
T 3i2n_A           91 NLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTV  170 (357)
T ss_dssp             CEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEE
T ss_pred             eEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEE
Confidence            99999999887 55555 4888999995      5789999999999999999999876544555543333    78888


Q ss_pred             EE----eCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCCCEEEEEECC---CCcEEEE-eCCCeEEEEeCCCceeeeE
Q 024372          152 AW----LHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSR---DGRYITT-ADGSSVKFWDANHFGLVKG  223 (268)
Q Consensus       152 ~~----~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~---~g~~l~~-~~~~~v~~wd~~~~~~~~~  223 (268)
                      +|    +++ +.++++++.|+.|++||+++++......+...+.+++|+|   ++.++++ +.++.|++||++..+.+..
T Consensus       171 ~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  249 (357)
T 3i2n_A          171 AFGNAYNQE-ERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKG  249 (357)
T ss_dssp             EEECCCC-C-CCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTE
T ss_pred             EEEeccCCC-CCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccc
Confidence            84    454 4566777888999999999999887777788899999999   8887765 5789999999987665544


Q ss_pred             Ee-----C-CCCceeeEEcCCCCC-EEEeccCCCeEEEEECCCCc
Q 024372          224 YN-----M-PCNTESASLEPKLGN-IFIAGGEDMWVHVFDFHTGE  261 (268)
Q Consensus       224 ~~-----~-~~~~~~~~~~~~~~~-~~~~gs~d~~i~~wd~~~g~  261 (268)
                      +.     . ...+..+.++| +++ +|++|+.|+.|++||+.+++
T Consensus       250 ~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~  293 (357)
T 3i2n_A          250 FASVSEKAHKSTVWQVRHLP-QNRELFLTAGGAGGLHLWKYEYPI  293 (357)
T ss_dssp             EEEEEEECCSSCEEEEEEET-TEEEEEEEEETTSEEEEEEEECCS
T ss_pred             eeeeccCCCcCCEEEEEECC-CCCcEEEEEeCCCcEEEeecCCCc
Confidence            43     3 33456677777 466 89999999999999997653

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-34  Score=244.94  Aligned_cols=250  Identities=13%  Similarity=0.176  Sum_probs=211.0

Q ss_pred             eecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCC----
Q 024372            7 AVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD----   82 (268)
Q Consensus         7 ~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D----   82 (268)
                      .....+.+|..+|.+++|+|   ++++|++++.|++|++||..+++.+..+. |...|.+++|+|++.++++++.+    
T Consensus        65 ~~~~~~~~h~~~v~~~~~~~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~  140 (369)
T 3zwl_B           65 ERLGTLDGHTGTIWSIDVDC---FTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKN  140 (369)
T ss_dssp             CEEEEECCCSSCEEEEEECT---TSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTB
T ss_pred             hhhhhhhhcCCcEEEEEEcC---CCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCC
Confidence            34455678999999999985   89999999999999999999999999888 88999999999999999999998    


Q ss_pred             -CcEEEEeCCCCCeee------------eeccCC--eEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCccc
Q 024372           83 -FTAKLWDALTGDEKH------------SFEHKH--IVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGS  147 (268)
Q Consensus        83 -~~v~iw~~~~~~~~~------------~~~~~~--~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~  147 (268)
                       +.|++||+.......            ...+..  .+.+++|+|+++.+++++.|+.|++||++...........|...
T Consensus       141 ~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  220 (369)
T 3zwl_B          141 PGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKS  220 (369)
T ss_dssp             CCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSC
T ss_pred             CCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCc
Confidence             999999987654211            112333  89999999999999999999999999998643444556667889


Q ss_pred             EEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEe-CCC--------------eEEE
Q 024372          148 IRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-DGS--------------SVKF  212 (268)
Q Consensus       148 v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~--------------~v~~  212 (268)
                      +.+++|+|++. ++++++.|+.|++||+++++.+..+.....+.+++++|++++++++ .++              .+++
T Consensus       221 v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~  299 (369)
T 3zwl_B          221 ISDMQFSPDLT-YFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARF  299 (369)
T ss_dssp             EEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEE
T ss_pred             eeEEEECCCCC-EEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEE
Confidence            99999998765 4556677899999999999999999888889999999999998765 444              7999


Q ss_pred             EeCCCceeeeEEeCCCC-ceeeEEcCCCCCEEEeccCCCeEEEEECCCCcE
Q 024372          213 WDANHFGLVKGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ  262 (268)
Q Consensus       213 wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~  262 (268)
                      ||+...+.+..+..+.. +..+.+++ ++++|++|+.|+.|++||+.++..
T Consensus       300 ~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~v~iw~~~~~~~  349 (369)
T 3zwl_B          300 YHKIFEEEIGRVQGHFGPLNTVAISP-QGTSYASGGEDGFIRLHHFEKSYF  349 (369)
T ss_dssp             EETTTCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEEECHHHH
T ss_pred             EecCCCcchhheecccCcEEEEEECC-CCCEEEEEcCCCeEEEEECccccc
Confidence            99999988888876544 45667776 799999999999999999986653

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=5.4e-35  Score=252.50  Aligned_cols=237  Identities=12%  Similarity=0.135  Sum_probs=193.0

Q ss_pred             CeeeE-EEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCee
Q 024372           18 PVVDL-FYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEK   96 (268)
Q Consensus        18 ~v~~~-~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~   96 (268)
                      .+..+ .|+   ++|++|++|+.|++|++||..+++.+..+.+|.+.|.+++|+|++.++++++.|++|++||+.++...
T Consensus        98 ~~~~~~~~~---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~  174 (420)
T 3vl1_A           98 DYTAVDTAK---LQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP  174 (420)
T ss_dssp             CEEEEEEEC---SSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCC
T ss_pred             CceEEEEEe---cCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCc
Confidence            44444 555   58999999999999999999999999888999999999999999999999999999999999998887


Q ss_pred             eeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEec---CCcccEEEEEE-------------------
Q 024372           97 HSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG---NSSGSIRTVAW-------------------  153 (268)
Q Consensus        97 ~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~---~~~~~v~~~~~-------------------  153 (268)
                      ..+. |...|.+++|+|+++.|++++.|+.|++||+++++.. ..+.   .+...+.++++                   
T Consensus       175 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~  253 (420)
T 3vl1_A          175 RTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTI-HTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNL  253 (420)
T ss_dssp             EEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEE-EEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTT
T ss_pred             eEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCcee-EEeecCCCCCCCccEEEEecCCcceeeecccCcccce
Confidence            7765 8889999999999999999999999999999865432 2222   24455666665                   


Q ss_pred             --eCCCCcEEEEeeCCCeEEEEeCCCCceEEeec--CCCCEEEEEECCCCc-EEEE-eCCCeEEEEeCCCcee-eeEEeC
Q 024372          154 --LHSDQTILSSCTDSGGVRLWDARSGKIVQTLE--TKSPVTSAEVSRDGR-YITT-ADGSSVKFWDANHFGL-VKGYNM  226 (268)
Q Consensus       154 --~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~s~~g~-~l~~-~~~~~v~~wd~~~~~~-~~~~~~  226 (268)
                        +|+ +.++++++.||.|++||+++++.+..+.  +...+.+++|+|++. ++++ +.|+.|++||+++.+. +..+..
T Consensus       254 ~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~  332 (420)
T 3vl1_A          254 EFGTY-GKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLI  332 (420)
T ss_dssp             CSSCT-TEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEE
T ss_pred             EEcCC-CCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhc
Confidence              343 4567777888999999999998887765  346799999999998 6655 5789999999988643 566654


Q ss_pred             -CCCceeeEEcCCCCCEEEeccCCCeEEEEECCCC
Q 024372          227 -PCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTG  260 (268)
Q Consensus       227 -~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g  260 (268)
                       +.......+++ ++++|++|+.|+.|++||+...
T Consensus       333 ~~~~~v~~~~~~-~~~~l~s~~~d~~v~iw~~~~~  366 (420)
T 3vl1_A          333 NEGTPINNVYFA-AGALFVSSGFDTSIKLDIISDP  366 (420)
T ss_dssp             STTSCEEEEEEE-TTEEEEEETTTEEEEEEEECCT
T ss_pred             cCCCCceEEEeC-CCCEEEEecCCccEEEEeccCC
Confidence             34444555555 5889999999999999998753

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.4e-36  Score=258.63  Aligned_cols=250  Identities=14%  Similarity=0.155  Sum_probs=204.1

Q ss_pred             ecEEeeecCCCeeeEEEecCCCC-CcEEEEEeCCCCeEEeeCCCCC------eE---EEeeCccCcEEEEEecCC-CcEE
Q 024372            8 VPLVCHGHSRPVVDLFYSPITPD-GFFLVSASKDSSPMLRNGETGD------WI---GTFEGHKGAVWSCCLDAN-ALFS   76 (268)
Q Consensus         8 ~~~~~~~h~~~v~~~~f~~~~~d-g~~l~s~s~d~~i~iw~~~~~~------~~---~~~~~h~~~V~~~~~~~~-~~~l   76 (268)
                      ....+.+|..+|.+++|+|   + +++|++++.|++|++||..+++      ..   ..+.+|...|.+++|+|+ +.++
T Consensus       105 ~~~~~~~h~~~v~~~~~~~---~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  181 (416)
T 2pm9_A          105 SMARFSNHSSSVKTVKFNA---KQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVF  181 (416)
T ss_dssp             EEEECCCSSSCCCEEEECS---SSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEE
T ss_pred             chhhccCCccceEEEEEcC---CCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEE
Confidence            4445678999999999986   5 8899999999999999999886      33   334689999999999999 7899


Q ss_pred             EEeeCCCcEEEEeCCCCCeeeeecc-------CCeEEEEEECCCC-CEEEEeeCCC---eEEEEECCCCCCCCeEec-CC
Q 024372           77 ASGSADFTAKLWDALTGDEKHSFEH-------KHIVRACAFSEDT-HLLLTGGFEK---ILRIFDLNRPDAPPREVG-NS  144 (268)
Q Consensus        77 ~s~s~D~~v~iw~~~~~~~~~~~~~-------~~~v~~v~~~~~~-~~l~s~~~d~---~i~~~d~~~~~~~~~~~~-~~  144 (268)
                      ++++.|+.|++||+.++.....+..       ...+.+++|+|++ .++++++.|+   .|++||++.......... .|
T Consensus       182 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~  261 (416)
T 2pm9_A          182 ASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGH  261 (416)
T ss_dssp             EEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCC
T ss_pred             EEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCc
Confidence            9999999999999999888777753       6789999999986 6999999998   999999987644555555 67


Q ss_pred             cccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecC-CCCEEEEEECCCC-cEEEE-eCCCeEEEEeCCCceee
Q 024372          145 SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDG-RYITT-ADGSSVKFWDANHFGLV  221 (268)
Q Consensus       145 ~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~s~~g-~~l~~-~~~~~v~~wd~~~~~~~  221 (268)
                      ...+.+++|+|.++.++++++.|+.|++||+++++++..+.. ...+.+++|+|++ .++++ +.|+.|++||+......
T Consensus       262 ~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~  341 (416)
T 2pm9_A          262 QKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNT  341 (416)
T ss_dssp             SSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCS
T ss_pred             cCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCC
Confidence            889999999985556677778889999999999999988865 4569999999998 77765 46899999999765432


Q ss_pred             eEEe------------------------------------CCCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCc
Q 024372          222 KGYN------------------------------------MPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGE  261 (268)
Q Consensus       222 ~~~~------------------------------------~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~  261 (268)
                      ....                                    .......+++++ +|+++++|+.|+.|++|++.+++
T Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~la~~~~d~~v~~w~~~~~~  416 (416)
T 2pm9_A          342 LDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAF-GGKLVQITPDGKGVSITNPKISG  416 (416)
T ss_dssp             SCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEET-TTEEECBCTTSSCBCCBCCCCC-
T ss_pred             cccccccccccCCcccccccccccccccccccccccCCccccCCccceEEee-CCeEEEEeCCCCeEEEEEeccCC
Confidence            1110                                    111223566777 69999999999999999998753

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=2.5e-35  Score=248.60  Aligned_cols=248  Identities=17%  Similarity=0.198  Sum_probs=195.1

Q ss_pred             eeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC-eEEEeeCccCcEEEEE------ecCCCcEEEEeeCCCc
Q 024372           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD-WIGTFEGHKGAVWSCC------LDANALFSASGSADFT   84 (268)
Q Consensus        12 ~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~-~~~~~~~h~~~V~~~~------~~~~~~~l~s~s~D~~   84 (268)
                      ..+|..+|.+++|+|..++|.+|++|+.|++|++|+..+++ .+..+.+|.+.|.+++      |+|++.++++++.|+.
T Consensus        61 ~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~  140 (357)
T 3i2n_A           61 EIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGT  140 (357)
T ss_dssp             EEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSC
T ss_pred             eecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCe
Confidence            34899999999999854458999999999999999999988 8889999999999995      5788999999999999


Q ss_pred             EEEEeCCCCC-eeeeec-c----CCeEEEEE----ECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEe
Q 024372           85 AKLWDALTGD-EKHSFE-H----KHIVRACA----FSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWL  154 (268)
Q Consensus        85 v~iw~~~~~~-~~~~~~-~----~~~v~~v~----~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~  154 (268)
                      |++||+.++. ....+. +    ...+.++.    |+|+++++++++.|+.|++||++.+..  .....+...+.+++|+
T Consensus       141 i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~v~~~~~~  218 (357)
T 3i2n_A          141 VKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL--RWETNIKNGVCSLEFD  218 (357)
T ss_dssp             EEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE--EEEEECSSCEEEEEES
T ss_pred             EEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCce--eeecCCCCceEEEEcC
Confidence            9999998876 555553 2    33788888    788999999999999999999986543  3334567899999999


Q ss_pred             C---CCCcEEEEeeCCCeEEEEeCCCCceEEee------cCCCCEEEEEECCCCc-EEEE-eCCCeEEEEeCCCc-----
Q 024372          155 H---SDQTILSSCTDSGGVRLWDARSGKIVQTL------ETKSPVTSAEVSRDGR-YITT-ADGSSVKFWDANHF-----  218 (268)
Q Consensus       155 ~---~~~~~~~~~~~d~~i~iwd~~~~~~~~~~------~~~~~v~~~~~s~~g~-~l~~-~~~~~v~~wd~~~~-----  218 (268)
                      |   ++. ++++++.||.|++||+++++.+..+      .+...+.+++|+|+++ ++++ +.|+.|++||++..     
T Consensus       219 ~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  297 (357)
T 3i2n_A          219 RKDISMN-KLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSK  297 (357)
T ss_dssp             CSSSSCC-EEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--
T ss_pred             CCCCCCC-EEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccccc
Confidence            8   554 5556677899999999887654433      3556799999999998 5554 57899999998643     


Q ss_pred             --------------eeeeEEeCCC-CceeeEEcCCCCCEEE-eccCCCeEEEEECCCCcEE
Q 024372          219 --------------GLVKGYNMPC-NTESASLEPKLGNIFI-AGGEDMWVHVFDFHTGEQI  263 (268)
Q Consensus       219 --------------~~~~~~~~~~-~~~~~~~~~~~~~~~~-~gs~d~~i~~wd~~~g~~~  263 (268)
                                    ..+..+..+. .+..+.+++ ++++|+ +|+.|+.|++||+.+.+.|
T Consensus       298 ~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~s~~~d~~i~iw~~~~~~~i  357 (357)
T 3i2n_A          298 KDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSP-DKRGLCVCSSFDQTVRVLIVTKLNKI  357 (357)
T ss_dssp             CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECS-SSTTEEEEEETTSEEEEEEECC----
T ss_pred             ccCCCCccccccccceeeccccCCCCeeEEEEcC-CCCeEEEEecCCCcEEEEECCCcccC
Confidence                          3455555444 355677777 577777 8999999999999887654

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1e-33  Score=235.24  Aligned_cols=250  Identities=15%  Similarity=0.234  Sum_probs=209.2

Q ss_pred             eeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcE
Q 024372            6 VAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTA   85 (268)
Q Consensus         6 ~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v   85 (268)
                      +...+.+++|...|++++|+|   +|++||+|+.|++|++|+.++++.+.++.+|...+.++++  ++.++++++.++.+
T Consensus        57 ~~~~~~~~~~~~~V~~v~~~~---~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~  131 (318)
T 4ggc_A           57 ILQLLQMEQPGEYISSVAWIK---EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHI  131 (318)
T ss_dssp             EEEEEECCSTTCCEEEEEECT---TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEE
T ss_pred             EEEEEEecCCCCeEEEEEECC---CCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec--CCCEEEEEecCCce
Confidence            344455568999999999985   8999999999999999999999999999999999877655  56789999999999


Q ss_pred             EEEeCCCCCeee--eeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCC---CeEecCCcccEEEEEEeCCCCcE
Q 024372           86 KLWDALTGDEKH--SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP---PREVGNSSGSIRTVAWLHSDQTI  160 (268)
Q Consensus        86 ~iw~~~~~~~~~--~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~  160 (268)
                      ++|+........  ...|...+..+.++++++.+++++.|+.|++||+++++..   ......+.+.+..+.+.+.+..+
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  211 (318)
T 4ggc_A          132 HHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNV  211 (318)
T ss_dssp             EEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTE
T ss_pred             EeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcE
Confidence            999987765432  3357889999999999999999999999999999765432   23445567889999999888776


Q ss_pred             E--EEeeCCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEE-e--CCCeEEEEeCCCceeeeEEeCCCC-ceeeE
Q 024372          161 L--SSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-A--DGSSVKFWDANHFGLVKGYNMPCN-TESAS  234 (268)
Q Consensus       161 ~--~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~--~~~~v~~wd~~~~~~~~~~~~~~~-~~~~~  234 (268)
                      +  ++++.++.|++||.+.............+..+.++|++..+++ +  .|+.|++||+++++++..+..+.. +..++
T Consensus       212 ~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~  291 (318)
T 4ggc_A          212 LATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLT  291 (318)
T ss_dssp             EEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred             EEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEE
Confidence            4  4566778999999999998888888888999999999987654 2  578999999999999998886654 45667


Q ss_pred             EcCCCCCEEEeccCCCeEEEEECCCCc
Q 024372          235 LEPKLGNIFIAGGEDMWVHVFDFHTGE  261 (268)
Q Consensus       235 ~~~~~~~~~~~gs~d~~i~~wd~~~g~  261 (268)
                      ++| ++++|++||.|+.|++||+...+
T Consensus       292 ~sp-dg~~l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          292 MSP-DGATVASAAADETLRLWRCFELD  317 (318)
T ss_dssp             ECT-TSSCEEEEETTTEEEEECCSCCC
T ss_pred             EcC-CCCEEEEEecCCeEEEEECCCCC
Confidence            776 69999999999999999997654

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=5.3e-35  Score=245.57  Aligned_cols=245  Identities=11%  Similarity=0.011  Sum_probs=202.2

Q ss_pred             eeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC---eEEEeeCccCcEEEEEecCCCc-EEEEeeCCCcEEE
Q 024372           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD---WIGTFEGHKGAVWSCCLDANAL-FSASGSADFTAKL   87 (268)
Q Consensus        12 ~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~---~~~~~~~h~~~V~~~~~~~~~~-~l~s~s~D~~v~i   87 (268)
                      ..+|.+.|.+++|+|   +|++|++++.|++|++|+..+++   ....+.+|...|.+++|+|++. ++++|+.|+.|++
T Consensus         7 ~~~h~~~v~~~~~s~---~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~   83 (342)
T 1yfq_A            7 EQAPKDYISDIKIIP---SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK   83 (342)
T ss_dssp             SSCCSSCEEEEEEEG---GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred             ccCCCCcEEEEEEcC---CCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence            358999999999996   88999999999999999998887   3445668999999999999999 9999999999999


Q ss_pred             EeC-CCCCeeeeec--cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCC---------CCCCCeEecCCcccEEEEEEeC
Q 024372           88 WDA-LTGDEKHSFE--HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNR---------PDAPPREVGNSSGSIRTVAWLH  155 (268)
Q Consensus        88 w~~-~~~~~~~~~~--~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~---------~~~~~~~~~~~~~~v~~~~~~~  155 (268)
                      ||+ .++.......  |...|.+++|+| ++.+++++.|+.|++||++.         .+.. .... +.+.+.+++|++
T Consensus        84 wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~-~~~~v~~~~~~~  160 (342)
T 1yfq_A           84 VDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS-NNTK-VKNKIFTMDTNS  160 (342)
T ss_dssp             ECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCS-SSSS-SCCCEEEEEECS
T ss_pred             EEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCee-eEEe-eCCceEEEEecC
Confidence            999 8887765556  889999999999 99999999999999999875         3322 2222 678899999987


Q ss_pred             CCCcEEEEeeCCCeEEEEeCCC-CceE---EeecCCCCEEEEEECC-CCcEEEE-eCCCeEEEEeCCCc------eeeeE
Q 024372          156 SDQTILSSCTDSGGVRLWDARS-GKIV---QTLETKSPVTSAEVSR-DGRYITT-ADGSSVKFWDANHF------GLVKG  223 (268)
Q Consensus       156 ~~~~~~~~~~~d~~i~iwd~~~-~~~~---~~~~~~~~v~~~~~s~-~g~~l~~-~~~~~v~~wd~~~~------~~~~~  223 (268)
                      +.   +++++.++.|++||+++ +...   ....+...+.+++|+| +++++++ +.++.|++||++..      .....
T Consensus       161 ~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~  237 (342)
T 1yfq_A          161 SR---LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA  237 (342)
T ss_dssp             SE---EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEE
T ss_pred             Cc---EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccccccee
Confidence            65   55667789999999998 5432   2334566799999999 9988765 57899999999776      55666


Q ss_pred             EeCCC----------CceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEeec
Q 024372          224 YNMPC----------NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       224 ~~~~~----------~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~~  266 (268)
                      +..+.          .+..+++++ ++++|++|+.|+.|++||+.+++.+..+
T Consensus       238 ~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~  289 (342)
T 1yfq_A          238 FRCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQTRKKIKNF  289 (342)
T ss_dssp             EECCCCCTTCCSSCCCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEEEEC
T ss_pred             eecccccccccccceeEEEEEEcC-CCCEEEEecCCceEEEEcCccHhHhhhh
Confidence            65543          445667776 6899999999999999999999987764

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.1e-34  Score=245.59  Aligned_cols=236  Identities=21%  Similarity=0.316  Sum_probs=202.0

Q ss_pred             cCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCC
Q 024372           15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD   94 (268)
Q Consensus        15 h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~   94 (268)
                      |.+.|.+++|+|   +|++|++|+.|+.|++|+ .+++.+..+.+|...|.+++|+|++.++++++.|+.|++||+.++.
T Consensus       107 ~~~~v~~~~~s~---~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  182 (425)
T 1r5m_A          107 TTNQVTCLAWSH---DGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGT  182 (425)
T ss_dssp             -CBCEEEEEECT---TSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTE
T ss_pred             CCCceEEEEEcC---CCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCc
Confidence            788999999985   899999999999999999 7788999999999999999999999999999999999999997665


Q ss_pred             eeeee---------------------------------------------------------ccCCeEEEEEECCCCCEE
Q 024372           95 EKHSF---------------------------------------------------------EHKHIVRACAFSEDTHLL  117 (268)
Q Consensus        95 ~~~~~---------------------------------------------------------~~~~~v~~v~~~~~~~~l  117 (268)
                      ....+                                                         .|...|.+++|+|+++.|
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  262 (425)
T 1r5m_A          183 VMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLL  262 (425)
T ss_dssp             EEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEE
T ss_pred             EEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEE
Confidence            43211                                                         255678999999999999


Q ss_pred             EEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecC-CCCEEEEEEC
Q 024372          118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVS  196 (268)
Q Consensus       118 ~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~s  196 (268)
                      ++++.|+.|++||++..+ ....+..|...+.+++|+|++  ++++++.|+.|++||+++++++..+.. ..++.+++|+
T Consensus       263 ~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s  339 (425)
T 1r5m_A          263 LSASDDGTLRIWHGGNGN-SQNCFYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRIS  339 (425)
T ss_dssp             EEEETTSCEEEECSSSBS-CSEEECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEEC
T ss_pred             EEEcCCCEEEEEECCCCc-cceEecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEc
Confidence            999999999999998654 345555678899999999977  666777889999999999999888864 5679999999


Q ss_pred             CCCcEEEEe-CCCeEEEEeCCCce--------------------eeeEEeCC--C-CceeeEEcCCCCCEEEeccCCCeE
Q 024372          197 RDGRYITTA-DGSSVKFWDANHFG--------------------LVKGYNMP--C-NTESASLEPKLGNIFIAGGEDMWV  252 (268)
Q Consensus       197 ~~g~~l~~~-~~~~v~~wd~~~~~--------------------~~~~~~~~--~-~~~~~~~~~~~~~~~~~gs~d~~i  252 (268)
                      |++++++++ .++.|++||++...                    ++..+..+  . .+..+.+++ ++++|++|+.|+.|
T Consensus       340 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i  418 (425)
T 1r5m_A          340 QDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNC-AGNKISVAYSLQEG  418 (425)
T ss_dssp             TTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECT-TSSEEEEEESSSCC
T ss_pred             CCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccC-CCceEEEEecCceE
Confidence            999988764 68999999998777                    77777665  2 556677776 68999999999999


Q ss_pred             EEEECC
Q 024372          253 HVFDFH  258 (268)
Q Consensus       253 ~~wd~~  258 (268)
                      ++||++
T Consensus       419 ~iw~~~  424 (425)
T 1r5m_A          419 SVVAIP  424 (425)
T ss_dssp             EEEECC
T ss_pred             EEEeec
Confidence            999985

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=6.8e-35  Score=249.38  Aligned_cols=239  Identities=15%  Similarity=0.167  Sum_probs=190.1

Q ss_pred             eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCc---cCcEEEEEecCCCcEEEEeeCCCcEEEEe
Q 024372           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH---KGAVWSCCLDANALFSASGSADFTAKLWD   89 (268)
Q Consensus        13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h---~~~V~~~~~~~~~~~l~s~s~D~~v~iw~   89 (268)
                      .+|...|.+++|+|  .++++|++++.|++|++||... +.+..+..|   ...|.+++|+|++.++++++.|+.|++||
T Consensus       115 ~~h~~~v~~~~~~~--~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d  191 (383)
T 3ei3_B          115 MGPGDAITGMKFNQ--FNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLG  191 (383)
T ss_dssp             CSTTCBEEEEEEET--TEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEE
T ss_pred             CCcCCceeEEEeCC--CCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEE
Confidence            47999999999996  2678999999999999999985 555566544   48899999999999999999999999999


Q ss_pred             CCCCCeeeee-ccCCeEEEEEECCCCC-EEEEeeCCCeEEEEECCCCCCC--CeEecCCcccEEEEEEeC-CCCcEEEEe
Q 024372           90 ALTGDEKHSF-EHKHIVRACAFSEDTH-LLLTGGFEKILRIFDLNRPDAP--PREVGNSSGSIRTVAWLH-SDQTILSSC  164 (268)
Q Consensus        90 ~~~~~~~~~~-~~~~~v~~v~~~~~~~-~l~s~~~d~~i~~~d~~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~~~~~~  164 (268)
                      +. +.....+ .|...|.+++|+|+++ ++++++.|+.|++||++..+..  ......|.+.+.+++|+| ++. +++++
T Consensus       192 ~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-~l~~~  269 (383)
T 3ei3_B          192 LD-GHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDST-KLLTT  269 (383)
T ss_dssp             TT-SCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSC-EEEEE
T ss_pred             CC-CCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCC-EEEEE
Confidence            94 5555555 4888999999999998 9999999999999999763321  222225788999999999 554 56666


Q ss_pred             eCCCeEEEEeCCCCceEEeecC------------------CCCEEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEeC
Q 024372          165 TDSGGVRLWDARSGKIVQTLET------------------KSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNM  226 (268)
Q Consensus       165 ~~d~~i~iwd~~~~~~~~~~~~------------------~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~  226 (268)
                      +.|+.|++||+++++....+..                  ...+..++++|++++ +++.|+.|++||+++.+++..+..
T Consensus       270 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~  348 (383)
T 3ei3_B          270 DQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRD  348 (383)
T ss_dssp             ESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECB
T ss_pred             cCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCceeeeecC
Confidence            7789999999998876554431                  123455777777777 556789999999999988888875


Q ss_pred             C--CCceee-EEcCCCCCEEEeccCCCeEEEEECCC
Q 024372          227 P--CNTESA-SLEPKLGNIFIAGGEDMWVHVFDFHT  259 (268)
Q Consensus       227 ~--~~~~~~-~~~~~~~~~~~~gs~d~~i~~wd~~~  259 (268)
                      +  ...... ++++ ++++|++|+ |+.|++||+++
T Consensus       349 ~~~~~~~~~~~~s~-~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          349 PNAAGIISLNKFSP-TGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             TTBCSCCCEEEECT-TSSEEEEEE-TTEEEEEECC-
T ss_pred             CCCCceEEEEEEec-CccEEEEec-CCcEEEEecCC
Confidence            3  334444 6666 699999997 99999999864

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=6.4e-34  Score=255.35  Aligned_cols=245  Identities=28%  Similarity=0.474  Sum_probs=203.9

Q ss_pred             EEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEe
Q 024372           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (268)
Q Consensus        10 ~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~   89 (268)
                      ..+.+|..+|.+++|+|   +|.+|++++.|+++++|+.. ++.+..+.+|...|.+++|+|++.++++++.|+.+++|+
T Consensus       297 ~~~~~h~~~v~~~~~~~---~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~  372 (577)
T 2ymu_A          297 QTLTGHSSSVWGVAFSP---DGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN  372 (577)
T ss_dssp             EEECCCSSCEEEEEECT---TSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             EEEecCCCCeEEEEECC---CCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEc
Confidence            34568999999999985   89999999999999999975 455678899999999999999999999999999999999


Q ss_pred             CCCCCeeeee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCC
Q 024372           90 ALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG  168 (268)
Q Consensus        90 ~~~~~~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~  168 (268)
                      .. ++....+ .|...|++++|+|++++|++++.|+.|++||...  ........|...+.+++|+|++. ++++++.|+
T Consensus       373 ~~-~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~--~~~~~~~~~~~~v~~~~~s~d~~-~l~~~~~d~  448 (577)
T 2ymu_A          373 RN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVWGVAFSPDDQ-TIASASDDK  448 (577)
T ss_dssp             TT-CCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTC--CEEEEEECCSSCEEEEEECTTSS-EEEEEETTS
T ss_pred             CC-CCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCC--CEEEEecCCCCCeEEEEECCCCC-EEEEEcCCC
Confidence            64 4444444 5888999999999999999999999999999642  23455567888999999998776 556677889


Q ss_pred             eEEEEeCCCCceEEeec-CCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCCC-ceeeEEcCCCCCEEEe
Q 024372          169 GVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCN-TESASLEPKLGNIFIA  245 (268)
Q Consensus       169 ~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  245 (268)
                      +|++||. +++.+..+. +..++.+++|+|++++|++ +.|+.|++||. ++++++.+..+.. +..++++| ++++|++
T Consensus       449 ~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~-dg~~l~s  525 (577)
T 2ymu_A          449 TVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIAS  525 (577)
T ss_dssp             EEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECT-TSSCEEE
T ss_pred             EEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcC-CCCEEEE
Confidence            9999996 466666665 4567999999999999876 57899999996 5667777776544 55677776 6999999


Q ss_pred             ccCCCeEEEEECCCCcEEeec
Q 024372          246 GGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       246 gs~d~~i~~wd~~~g~~~~~~  266 (268)
                      |+.|+.|++||. +|+.+..+
T Consensus       526 ~~~dg~v~lwd~-~~~~~~~~  545 (577)
T 2ymu_A          526 ASDDKTVKLWNR-NGQLLQTL  545 (577)
T ss_dssp             EETTSEEEEECT-TSCEEEEE
T ss_pred             EECcCEEEEEeC-CCCEEEEE
Confidence            999999999995 68877654

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.5e-34  Score=236.67  Aligned_cols=245  Identities=20%  Similarity=0.283  Sum_probs=202.4

Q ss_pred             eecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCC---CeEEEeeCccCcEEEEEecCCCcEEEEeeCCC
Q 024372            7 AVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG---DWIGTFEGHKGAVWSCCLDANALFSASGSADF   83 (268)
Q Consensus         7 ~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~---~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~   83 (268)
                      .....+.+|...|.+++|+|   ++++|++|+.|+.+++|++...   +.+..+.+|...|.+++|  ++.++++++.|+
T Consensus        50 ~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~  124 (313)
T 3odt_A           50 WLGTVVYTGQGFLNSVCYDS---EKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDK  124 (313)
T ss_dssp             EEEEEEEECSSCEEEEEEET---TTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTS
T ss_pred             EEEEEeecCCccEEEEEECC---CCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCC
Confidence            34555678999999999995   8999999999999999987664   567888999999999999  567899999999


Q ss_pred             cEEEEeCCCCCeeeee-ccCCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCCCeEec-CCcccEEEEEEeCCCCcE
Q 024372           84 TAKLWDALTGDEKHSF-EHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVG-NSSGSIRTVAWLHSDQTI  160 (268)
Q Consensus        84 ~v~iw~~~~~~~~~~~-~~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~  160 (268)
                      .|++||  .......+ .|...+.++.|+| +++.+++++.|+.+++||...   ...... .+...+.+++|+|++.  
T Consensus       125 ~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~---~~~~~~~~~~~~i~~~~~~~~~~--  197 (313)
T 3odt_A          125 TAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK---VIKTFSGIHNDVVRHLAVVDDGH--  197 (313)
T ss_dssp             EEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE---EEEEECSSCSSCEEEEEEEETTE--
T ss_pred             CEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc---eEEEEeccCcccEEEEEEcCCCe--
Confidence            999999  44444444 4788999999988 899999999999999999432   223333 3788999999998775  


Q ss_pred             EEEeeCCCeEEEEeCCCCceEEeec-CCCCEEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEeCCCC-ceeeEEcCC
Q 024372          161 LSSCTDSGGVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCN-TESASLEPK  238 (268)
Q Consensus       161 ~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~~~~-~~~~~~~~~  238 (268)
                      +++++.|+.|++||+++++.+..+. +..++.+++|+|++++++++.|+.|++||+++.+.+..+..+.. ...+.+.+ 
T Consensus       198 ~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~-  276 (313)
T 3odt_A          198 FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMS-  276 (313)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECT-
T ss_pred             EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEcc-
Confidence            5566778999999999999998887 45679999999999877788899999999999988888877654 45666666 


Q ss_pred             CCCEEEeccCCCeEEEEECCCCcEEee
Q 024372          239 LGNIFIAGGEDMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       239 ~~~~~~~gs~d~~i~~wd~~~g~~~~~  265 (268)
                      +++ +++++.|+.|++||+.+++.+..
T Consensus       277 ~~~-~~~~~~dg~i~iw~~~~~~~~~~  302 (313)
T 3odt_A          277 NGD-IIVGSSDNLVRIFSQEKSRWASE  302 (313)
T ss_dssp             TSC-EEEEETTSCEEEEESCGGGCCC-
T ss_pred             CCC-EEEEeCCCcEEEEeCCCCceeeh
Confidence            566 67799999999999998876543

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=9.4e-34  Score=248.15  Aligned_cols=248  Identities=21%  Similarity=0.347  Sum_probs=202.0

Q ss_pred             eecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEec--CCCcEEEEeeCCCc
Q 024372            7 AVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLD--ANALFSASGSADFT   84 (268)
Q Consensus         7 ~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~--~~~~~l~s~s~D~~   84 (268)
                      .....+.+|.++|.+++|+|   ++ +|++|+.|++|++||..+++.+..+.+|.+.|.+++|.  +++.++++|+.|++
T Consensus       153 ~~~~~~~~h~~~V~~l~~~~---~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~  228 (464)
T 3v7d_B          153 KFLLQLSGHDGGVWALKYAH---GG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNT  228 (464)
T ss_dssp             EEEEEECCCSSCEEEEEECS---TT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSC
T ss_pred             cEEEEEeCCCcCEEEEEEcC---CC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCc
Confidence            34455678999999999985   55 89999999999999999999999999999999999998  57789999999999


Q ss_pred             EEEEeCCCCCeee------------------------eeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeE
Q 024372           85 AKLWDALTGDEKH------------------------SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE  140 (268)
Q Consensus        85 v~iw~~~~~~~~~------------------------~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~  140 (268)
                      |++||+.+.....                        ...|...+.++  +++++.+++|+.|+.|++||+++++. ...
T Consensus       229 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~-~~~  305 (464)
T 3v7d_B          229 LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKC-LYI  305 (464)
T ss_dssp             EEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEE-EEE
T ss_pred             EEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcE-EEE
Confidence            9999998765321                        11355566665  67788999999999999999976543 345


Q ss_pred             ecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecC-CCCEEEEEECCCCcEEEEeCCCeEEEEeCCCce
Q 024372          141 VGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTADGSSVKFWDANHFG  219 (268)
Q Consensus       141 ~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~  219 (268)
                      +..|...+.+++|+|++. .+++++.|+.|++||+++++++.++.. ...+.++.+++ ..+++++.|+.|++||+++..
T Consensus       306 ~~~~~~~v~~~~~~~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~l~s~s~dg~v~vwd~~~~~  383 (464)
T 3v7d_B          306 LSGHTDRIYSTIYDHERK-RCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD-KFLVSAAADGSIRGWDANDYS  383 (464)
T ss_dssp             ECCCSSCEEEEEEETTTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECS-SEEEEEETTSEEEEEETTTCC
T ss_pred             ecCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcC-CEEEEEeCCCcEEEEECCCCc
Confidence            556788999999998766 455667889999999999999999874 45699999984 334455689999999999877


Q ss_pred             eeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEee
Q 024372          220 LVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~  265 (268)
                      ...............+.+ +++++++|+ |+.|++||+++|+.+..
T Consensus       384 ~~~~~~~~~~~~~~~~~~-~~~~l~~~~-dg~i~iwd~~~g~~~~~  427 (464)
T 3v7d_B          384 RKFSYHHTNLSAITTFYV-SDNILVSGS-ENQFNIYNLRSGKLVHA  427 (464)
T ss_dssp             EEEEEECTTCCCEEEEEE-CSSEEEEEE-TTEEEEEETTTCCEEES
T ss_pred             eeeeecCCCCccEEEEEe-CCCEEEEec-CCeEEEEECCCCcEEeh
Confidence            666665554555566666 688999888 89999999999998864

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=3.3e-34  Score=249.44  Aligned_cols=247  Identities=18%  Similarity=0.265  Sum_probs=203.0

Q ss_pred             EEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC----------CCeEEEeeCccCcEEEEEecCCCc-EEEE
Q 024372           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET----------GDWIGTFEGHKGAVWSCCLDANAL-FSAS   78 (268)
Q Consensus        10 ~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~----------~~~~~~~~~h~~~V~~~~~~~~~~-~l~s   78 (268)
                      ....+|.+.|++++|+|  .++.+||+++.|+.|++|+..+          .+.+..+.+|...|.+++|+|++. +|++
T Consensus       122 ~~~~~h~~~v~~l~~~p--~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s  199 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMP--QNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLS  199 (430)
T ss_dssp             EEEEEESSCCSEEEEET--TEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEE
T ss_pred             EEEEcCCCcEEEEEECC--CCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEE
Confidence            33458999999999996  2378999999999999999876          577888999999999999999988 9999


Q ss_pred             eeCCCcEEEEeCCCCCe-------eeee-ccCCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCC--CCCeEecCCccc
Q 024372           79 GSADFTAKLWDALTGDE-------KHSF-EHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPD--APPREVGNSSGS  147 (268)
Q Consensus        79 ~s~D~~v~iw~~~~~~~-------~~~~-~~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~--~~~~~~~~~~~~  147 (268)
                      |+.||+|++|++.++..       ...+ .|...|.+++|+| ++.+|++++.|+.|++||++...  ........|...
T Consensus       200 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  279 (430)
T 2xyi_A          200 ASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAE  279 (430)
T ss_dssp             ECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSC
T ss_pred             EeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCC
Confidence            99999999999987432       2222 5788999999999 78899999999999999998653  334455577889


Q ss_pred             EEEEEEeCCCCcEEEEeeCCCeEEEEeCCC-CceEEeec-CCCCEEEEEECCCCc-EEE-EeCCCeEEEEeCCCc-----
Q 024372          148 IRTVAWLHSDQTILSSCTDSGGVRLWDARS-GKIVQTLE-TKSPVTSAEVSRDGR-YIT-TADGSSVKFWDANHF-----  218 (268)
Q Consensus       148 v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~-~~~~~~~~-~~~~v~~~~~s~~g~-~l~-~~~~~~v~~wd~~~~-----  218 (268)
                      +++++|+|.+..++++++.||.|++||+++ +..+..+. +...+.+++|+|+++ +++ ++.|+.|++||+...     
T Consensus       280 v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~  359 (430)
T 2xyi_A          280 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS  359 (430)
T ss_dssp             EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCC
T ss_pred             eEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccC
Confidence            999999999888888889999999999998 55677776 556799999999985 444 457899999999762     


Q ss_pred             ---------eeeeEEeCCC-CceeeEEcCCCCC-EEEeccCCCeEEEEECCC
Q 024372          219 ---------GLVKGYNMPC-NTESASLEPKLGN-IFIAGGEDMWVHVFDFHT  259 (268)
Q Consensus       219 ---------~~~~~~~~~~-~~~~~~~~~~~~~-~~~~gs~d~~i~~wd~~~  259 (268)
                               .++..+..+. .+..+.+++. +. +|++++.|+.|++|++..
T Consensus       360 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~-~~~~l~s~s~dg~i~iw~~~~  410 (430)
T 2xyi_A          360 TEDAEDGPPELLFIHGGHTAKISDFSWNPN-EPWIICSVSEDNIMQVWQMAE  410 (430)
T ss_dssp             HHHHHHCCTTEEEECCCCSSCEEEEEECSS-STTEEEEEETTSEEEEEEECH
T ss_pred             ccccccCCcceEEEcCCCCCCceEEEECCC-CCCEEEEEECCCCEEEeEccc
Confidence                     3444444443 3667788874 66 899999999999999863

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-35  Score=272.78  Aligned_cols=248  Identities=19%  Similarity=0.268  Sum_probs=199.1

Q ss_pred             EEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCC--CCCeEEEeeCccCcEEEEEecCC--CcEEEEeeCCCcE
Q 024372           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGE--TGDWIGTFEGHKGAVWSCCLDAN--ALFSASGSADFTA   85 (268)
Q Consensus        10 ~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~--~~~~~~~~~~h~~~V~~~~~~~~--~~~l~s~s~D~~v   85 (268)
                      .++.+|.++|++++|+|   +|++|++|+.||+|++|+..  +++.+..+.+|.++|.+++|+++  +.++++|+.||+|
T Consensus         3 ~~l~gH~~~V~~l~~s~---dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I   79 (753)
T 3jro_A            3 VIANAHNELIHDAVLDY---YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV   79 (753)
T ss_dssp             -----CCCCEEEECCCS---SSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCE
T ss_pred             eecccCcceeEEEEECC---CCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeE
Confidence            35679999999999985   89999999999999999987  55778899999999999999987  8999999999999


Q ss_pred             EEEeCCCCC--eeeee-ccCCeEEEEEECCC--CCEEEEeeCCCeEEEEECCCCCC-CCeEecCCcccEEEEEEeCC---
Q 024372           86 KLWDALTGD--EKHSF-EHKHIVRACAFSED--THLLLTGGFEKILRIFDLNRPDA-PPREVGNSSGSIRTVAWLHS---  156 (268)
Q Consensus        86 ~iw~~~~~~--~~~~~-~~~~~v~~v~~~~~--~~~l~s~~~d~~i~~~d~~~~~~-~~~~~~~~~~~v~~~~~~~~---  156 (268)
                      ++||+.++.  ....+ .|...|.+++|+|+  ++.+++|+.|+.|++||++.... .......|...+.++.|+|.   
T Consensus        80 ~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~  159 (753)
T 3jro_A           80 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE  159 (753)
T ss_dssp             EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC--
T ss_pred             EEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccc
Confidence            999998875  33333 48889999999999  99999999999999999986533 23445567889999999985   


Q ss_pred             ---------CCcEEEEeeCCCeEEEEeCCCC----ceEEeec-CCCCEEEEEECCC---CcEEEE-eCCCeEEEEeCCCc
Q 024372          157 ---------DQTILSSCTDSGGVRLWDARSG----KIVQTLE-TKSPVTSAEVSRD---GRYITT-ADGSSVKFWDANHF  218 (268)
Q Consensus       157 ---------~~~~~~~~~~d~~i~iwd~~~~----~~~~~~~-~~~~v~~~~~s~~---g~~l~~-~~~~~v~~wd~~~~  218 (268)
                               ++.++++++.||.|++||++++    .+...+. +..++.+++|+|+   ++++++ +.|+.|++||++..
T Consensus       160 ~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~  239 (753)
T 3jro_A          160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE  239 (753)
T ss_dssp             -------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSS
T ss_pred             cccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCC
Confidence                     3456667778899999999887    3445555 4567999999999   888765 56899999999875


Q ss_pred             ee-----eeEE-eCCCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCc
Q 024372          219 GL-----VKGY-NMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGE  261 (268)
Q Consensus       219 ~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~  261 (268)
                      ..     +... .....+..++++| ++++|++|+.|+.|++||+.++.
T Consensus       240 ~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~l~s~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          240 QGPWKKTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWKENLEG  287 (753)
T ss_dssp             SSCCBCCBSSSSCCSSCCCCEEECT-TTCCEEEECSSSCEECCBCCSSS
T ss_pred             CCcceeEEeccCCCCCceEEEEEcC-CCCEEEEEcCCCEEEEEecCCCC
Confidence            31     1111 1233455677777 69999999999999999997543

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.2e-34  Score=244.87  Aligned_cols=246  Identities=20%  Similarity=0.254  Sum_probs=194.7

Q ss_pred             EEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC-CCeE-EEeeCccCcEEEEEecCCCcEEEEeeCCCcEEE
Q 024372           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-GDWI-GTFEGHKGAVWSCCLDANALFSASGSADFTAKL   87 (268)
Q Consensus        10 ~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~-~~~~-~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~i   87 (268)
                      ..+.+|.+.|++++|+|...+|++|++|+.|++|++|+..+ ++.+ ..+.+|.+.|.+++|+|++.++++++.|+.|++
T Consensus        33 ~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~i  112 (368)
T 3mmy_A           33 EVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKM  112 (368)
T ss_dssp             ECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             EeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEE
Confidence            34568999999999997322379999999999999999997 5554 788999999999999999999999999999999


Q ss_pred             EeCCCCCeeeeeccCCeEEEEEE--CCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCc--------------------
Q 024372           88 WDALTGDEKHSFEHKHIVRACAF--SEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSS--------------------  145 (268)
Q Consensus        88 w~~~~~~~~~~~~~~~~v~~v~~--~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~--------------------  145 (268)
                      ||+.++.......|...|.+++|  ++++++|++++.|+.|++||+++++.. .....+.                    
T Consensus       113 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (368)
T 3mmy_A          113 WDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPM-MVLQLPERCYCADVIYPMAVVATAERG  191 (368)
T ss_dssp             EETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCS-EEEECSSCEEEEEEETTEEEEEEGGGC
T ss_pred             EEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEE-EEEecCCCceEEEecCCeeEEEeCCCc
Confidence            99999998888889999999999  899999999999999999999865432 2222111                    


Q ss_pred             ---------------------ccEEEEEEeCCCC---cEEEEeeCCCeEEEEeCCCC---ceEEeecCCC----------
Q 024372          146 ---------------------GSIRTVAWLHSDQ---TILSSCTDSGGVRLWDARSG---KIVQTLETKS----------  188 (268)
Q Consensus       146 ---------------------~~v~~~~~~~~~~---~~~~~~~~d~~i~iwd~~~~---~~~~~~~~~~----------  188 (268)
                                           ....++.+.+...   ..+++++.|+.|++||++..   +.+..+..+.          
T Consensus       192 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (368)
T 3mmy_A          192 LIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQ  271 (368)
T ss_dssp             EEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCE
T ss_pred             EEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccc
Confidence                                 1233333333222   22667778899999999887   4455555433          


Q ss_pred             ---CEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCC-CceeeEEcCCCCCEEEeccCCCeEEEEEC
Q 024372          189 ---PVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPC-NTESASLEPKLGNIFIAGGEDMWVHVFDF  257 (268)
Q Consensus       189 ---~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gs~d~~i~~wd~  257 (268)
                         ++.+++|+|++++|++ +.|+.|++||+++.+++..+..+. .+..++++| ++++|++|+.|+..+.|++
T Consensus       272 ~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~s~d~~~~~~~~  344 (368)
T 3mmy_A          272 DIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNH-NGNIFAYASSYDWSKGHEF  344 (368)
T ss_dssp             EECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECT-TSSCEEEEECCCSTTCGGG
T ss_pred             cccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECC-CCCeEEEEecccccccccc
Confidence               6999999999988776 478999999999998888877644 455677776 6999999998875554443

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.7e-35  Score=252.32  Aligned_cols=204  Identities=13%  Similarity=0.101  Sum_probs=160.9

Q ss_pred             ecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC---eEEEeeCccCcEEEEEecCCCcEEEEeeCCCc
Q 024372            8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD---WIGTFEGHKGAVWSCCLDANALFSASGSADFT   84 (268)
Q Consensus         8 ~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~---~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~   84 (268)
                      ....+.+|.++|.+++|+|   +|++|++++.|++|++||..+++   ....+.+|...|.+++|+|++.++++++.|++
T Consensus        47 ~~~~~~~h~~~v~~~~~s~---~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  123 (377)
T 3dwl_C           47 HARTFSDHDKIVTCVDWAP---KSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARV  123 (377)
T ss_dssp             ECCCBCCCSSCEEEEEECT---TTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSC
T ss_pred             EEEEEecCCceEEEEEEeC---CCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCe
Confidence            3445668999999999985   88999999999999999999887   67778899999999999999999999999999


Q ss_pred             EEEEeCCCCCe---eeeec--cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCC-----------------CCeEec
Q 024372           85 AKLWDALTGDE---KHSFE--HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDA-----------------PPREVG  142 (268)
Q Consensus        85 v~iw~~~~~~~---~~~~~--~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~-----------------~~~~~~  142 (268)
                      |++||+.++..   ...+.  |...|.+++|+|++++|++++.|+.|++||++....                 ....+ 
T Consensus       124 i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  202 (377)
T 3dwl_C          124 ISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-  202 (377)
T ss_dssp             EEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-
T ss_pred             EEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-
Confidence            99999988762   44443  788999999999999999999999999999853210                 11122 


Q ss_pred             CCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCce----EEeecC-CCCEEEEEECCCCcEEEEeCCCeEEEEeCC
Q 024372          143 NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI----VQTLET-KSPVTSAEVSRDGRYITTADGSSVKFWDAN  216 (268)
Q Consensus       143 ~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~----~~~~~~-~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~  216 (268)
                      .|.+.+.+++|+|++.. +++++.|+.|++||++++++    +..+.. ..++.+++|+|++++|+++.++.+.+|+..
T Consensus       203 ~~~~~v~~~~~sp~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~  280 (377)
T 3dwl_C          203 PSGGWVHAVGFSPSGNA-LAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGN  280 (377)
T ss_dssp             CCSSSEEEEEECTTSSC-EEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCC
T ss_pred             cCCceEEEEEECCCCCE-EEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeC
Confidence            67788999999998764 55667789999999999887    566654 456999999999999998877677788764

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=8.4e-35  Score=253.51  Aligned_cols=249  Identities=12%  Similarity=0.101  Sum_probs=184.6

Q ss_pred             EEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeC--ccCcEEEEEecCCCcEEEEeeCCCcEEE
Q 024372           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG--HKGAVWSCCLDANALFSASGSADFTAKL   87 (268)
Q Consensus        10 ~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~--h~~~V~~~~~~~~~~~l~s~s~D~~v~i   87 (268)
                      +.+.+|.++|++++|+|  .++++|++|+.|++|++||++++........  +...+.+++|++++.++++|+.|+.|++
T Consensus       158 ~~~~gH~~~V~~l~f~p--~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~  235 (435)
T 4e54_B          158 IKGIGAGGSITGLKFNP--LNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVIL  235 (435)
T ss_dssp             ECCCSSSCCCCEEEECS--SCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEE
T ss_pred             EEccCCCCCEEEEEEeC--CCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEee
Confidence            33468999999999997  3688999999999999999987654433333  3446788999999999999999999999


Q ss_pred             EeCCCCCeeeeeccCCeEEEEEECCCCC-EEEEeeCCCeEEEEECCCCCCCCe--EecCCcccEEEEEEeCCCCcEEEEe
Q 024372           88 WDALTGDEKHSFEHKHIVRACAFSEDTH-LLLTGGFEKILRIFDLNRPDAPPR--EVGNSSGSIRTVAWLHSDQTILSSC  164 (268)
Q Consensus        88 w~~~~~~~~~~~~~~~~v~~v~~~~~~~-~l~s~~~d~~i~~~d~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~  164 (268)
                      ||+..........|...|.+++|+|++. ++++|+.|+.|++||++.......  ....|...|.+++|+|++. +++++
T Consensus       236 wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~-~l~s~  314 (435)
T 4e54_B          236 LNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGA-RLLTT  314 (435)
T ss_dssp             EESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSS-EEEEE
T ss_pred             eccCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCC-eeEEE
Confidence            9987554433345888999999999875 788999999999999976543322  2245778999999998775 45566


Q ss_pred             eCCCeEEEEeCCCCceEEeecCC-------CCEEEEEECCCCcEEEEe-------------CCCeEEEEeCCCceeeeEE
Q 024372          165 TDSGGVRLWDARSGKIVQTLETK-------SPVTSAEVSRDGRYITTA-------------DGSSVKFWDANHFGLVKGY  224 (268)
Q Consensus       165 ~~d~~i~iwd~~~~~~~~~~~~~-------~~v~~~~~s~~g~~l~~~-------------~~~~v~~wd~~~~~~~~~~  224 (268)
                      +.|+.|+|||++++++...+..+       ..+..+.++|++.+++++             +++.|++||..+++.+..+
T Consensus       315 ~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l  394 (435)
T 4e54_B          315 DQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQL  394 (435)
T ss_dssp             ESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEE
T ss_pred             cCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEE
Confidence            77899999999998877655322       123345566666554432             2357999999998887766


Q ss_pred             eCC--CCceeeE-EcCCCCCEEEeccCCCeEEEEECCCCcEE
Q 024372          225 NMP--CNTESAS-LEPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (268)
Q Consensus       225 ~~~--~~~~~~~-~~~~~~~~~~~gs~d~~i~~wd~~~g~~~  263 (268)
                      ..+  ..+.++. ++| +|++|++|+ |+.|++||+++|+..
T Consensus       395 ~~~~~~~v~s~~~fsp-dg~~lasg~-d~~i~iW~~~~gk~r  434 (435)
T 4e54_B          395 YDPESSGISSLNEFNP-MGDTLASAM-GYHILIWSQQEARTR  434 (435)
T ss_dssp             CCSSCCCCCCEEEECT-TSSCEEEEC-SSEEEECCCC-----
T ss_pred             eCCCCCcEEEEEEECC-CCCEEEEEc-CCcEEEEECCcCeee
Confidence            432  2344443 555 799998876 778999999998864

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=2.5e-34  Score=247.78  Aligned_cols=246  Identities=19%  Similarity=0.288  Sum_probs=200.3

Q ss_pred             EeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCC-------CeEEEeeCccCcEEEEEecCCC-cEEEEeeCC
Q 024372           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG-------DWIGTFEGHKGAVWSCCLDANA-LFSASGSAD   82 (268)
Q Consensus        11 ~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~-------~~~~~~~~h~~~V~~~~~~~~~-~~l~s~s~D   82 (268)
                      .+.+|.++|++++|+|.  ++++|++|+.|++|++|+..++       +.+..+.+|...|.+++|+|++ .++++++.|
T Consensus        76 ~~~~h~~~V~~~~~~p~--~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~d  153 (402)
T 2aq5_A           76 LVCGHTAPVLDIAWCPH--NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD  153 (402)
T ss_dssp             CBCCCSSCEEEEEECTT--CTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETT
T ss_pred             eEecCCCCEEEEEeCCC--CCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCC
Confidence            35689999999999852  7889999999999999999988       6678899999999999999998 699999999


Q ss_pred             CcEEEEeCCCCCeeeee---ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCccc-EEEEEEeCCCC
Q 024372           83 FTAKLWDALTGDEKHSF---EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGS-IRTVAWLHSDQ  158 (268)
Q Consensus        83 ~~v~iw~~~~~~~~~~~---~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~-v~~~~~~~~~~  158 (268)
                      ++|++||+.+++....+   .|...|.+++|+|+++.|++++.|+.|++||+++++........|.+. +.++.|++++ 
T Consensus       154 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  232 (402)
T 2aq5_A          154 NVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEG-  232 (402)
T ss_dssp             SCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTT-
T ss_pred             CEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCC-
Confidence            99999999999888877   388899999999999999999999999999998754332221445544 7889999865 


Q ss_pred             cEEEEe---eCCCeEEEEeCCCCce---EEeecCCCCEEEEEECCCCcEEE-Ee-CCCeEEEEeCCCce----eeeEEeC
Q 024372          159 TILSSC---TDSGGVRLWDARSGKI---VQTLETKSPVTSAEVSRDGRYIT-TA-DGSSVKFWDANHFG----LVKGYNM  226 (268)
Q Consensus       159 ~~~~~~---~~d~~i~iwd~~~~~~---~~~~~~~~~v~~~~~s~~g~~l~-~~-~~~~v~~wd~~~~~----~~~~~~~  226 (268)
                      .+++++   +.|+.|++||+++++.   ...+.+...+.+++|+|++++++ ++ .|+.|++||+...+    .+..+..
T Consensus       233 ~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~  312 (402)
T 2aq5_A          233 KILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSS  312 (402)
T ss_dssp             EEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECC
T ss_pred             cEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeeccccc
Confidence            466666   5779999999998764   33445667799999999999875 45 58999999998766    3344444


Q ss_pred             CCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcE
Q 024372          227 PCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ  262 (268)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~  262 (268)
                      ......+++.| ++.++++  .|+.+++|++.+++.
T Consensus       313 ~~~v~~~~~sp-~~~~~~s--~~~~~~~~~l~~~~~  345 (402)
T 2aq5_A          313 KESQRGMGYMP-KRGLEVN--KCEIARFYKLHERKC  345 (402)
T ss_dssp             SSCCSEEEECC-GGGSCGG--GTEEEEEEEEETTEE
T ss_pred             CCcccceEEec-cccccee--cceeEEEEEcCCCcE
Confidence            45667788887 5776554  566899999987654

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2e-34  Score=243.62  Aligned_cols=246  Identities=11%  Similarity=0.211  Sum_probs=196.1

Q ss_pred             eeecCCCeeeEEEecCCCC-CcEEEEEeCCCCeEEeeCCCCCeEEEeeC-----ccCcEEEEEecCC----CcEEEEeeC
Q 024372           12 CHGHSRPVVDLFYSPITPD-GFFLVSASKDSSPMLRNGETGDWIGTFEG-----HKGAVWSCCLDAN----ALFSASGSA   81 (268)
Q Consensus        12 ~~~h~~~v~~~~f~~~~~d-g~~l~s~s~d~~i~iw~~~~~~~~~~~~~-----h~~~V~~~~~~~~----~~~l~s~s~   81 (268)
                      ..+|.++|.+++|+|.+++ ..++++++.++.|++|+..+++.+..+..     |...|.+++|+|+    +.++++|+.
T Consensus        14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~   93 (366)
T 3k26_A           14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS   93 (366)
T ss_dssp             ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred             ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence            4589999999999985333 34566666677999999998887777764     4577999999998    679999999


Q ss_pred             CCcEEEEeCCCCCeeeeec-cCCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCCCeEe---cCCcccEEEEEEeCC
Q 024372           82 DFTAKLWDALTGDEKHSFE-HKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREV---GNSSGSIRTVAWLHS  156 (268)
Q Consensus        82 D~~v~iw~~~~~~~~~~~~-~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~---~~~~~~v~~~~~~~~  156 (268)
                      |+.|++||+.+++....+. |...|.+++|+| +++.|++|+.|+.|++||++.++. ....   ..|...+.+++|+|+
T Consensus        94 dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~  172 (366)
T 3k26_A           94 RGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL-VAIFGGVEGHRDEVLSADYDLL  172 (366)
T ss_dssp             TCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEE-EEEECSTTSCSSCEEEEEECTT
T ss_pred             CCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeE-EEEecccccccCceeEEEECCC
Confidence            9999999999999888776 889999999999 999999999999999999976543 2333   467889999999987


Q ss_pred             CCcEEEEeeCCCeEEEEeCCCCceEEeec-----------------------------CCCCEEEEEECCCCcEEE-EeC
Q 024372          157 DQTILSSCTDSGGVRLWDARSGKIVQTLE-----------------------------TKSPVTSAEVSRDGRYIT-TAD  206 (268)
Q Consensus       157 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-----------------------------~~~~v~~~~~s~~g~~l~-~~~  206 (268)
                      +. ++++++.|+.|++||+++++.+..+.                             +...+.+++|+  +++++ ++.
T Consensus       173 ~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~  249 (366)
T 3k26_A          173 GE-KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSC  249 (366)
T ss_dssp             SS-EEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECS
T ss_pred             CC-EEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEec
Confidence            65 45566778999999999876554332                             55678999998  44555 457


Q ss_pred             CCeEEEEeCCCcee--------------eeEEeCCC-CceeeEEcCCC--CCEEEeccCCCeEEEEECCCCcE
Q 024372          207 GSSVKFWDANHFGL--------------VKGYNMPC-NTESASLEPKL--GNIFIAGGEDMWVHVFDFHTGEQ  262 (268)
Q Consensus       207 ~~~v~~wd~~~~~~--------------~~~~~~~~-~~~~~~~~~~~--~~~~~~gs~d~~i~~wd~~~g~~  262 (268)
                      |+.|++||++....              +..+..+. .+..+.+++ +  +++|++|+.|+.|++||+.+++.
T Consensus       250 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~~l~~~~~dg~i~vwd~~~~~~  321 (366)
T 3k26_A          250 ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSM-DFWQKMLALGNQVGKLYVWDLEVEDP  321 (366)
T ss_dssp             SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEE-CTTSSEEEEECTTSCEEEEECCSSSG
T ss_pred             CCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcC-CCCCcEEEEEecCCcEEEEECCCCCC
Confidence            89999999876533              55555433 345566665 5  89999999999999999998764

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.2e-33  Score=254.69  Aligned_cols=245  Identities=18%  Similarity=0.198  Sum_probs=210.2

Q ss_pred             eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCC----CeEEEeeCccCc-EEEEEecC--CCcEEEEeeCCCcE
Q 024372           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG----DWIGTFEGHKGA-VWSCCLDA--NALFSASGSADFTA   85 (268)
Q Consensus        13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~----~~~~~~~~h~~~-V~~~~~~~--~~~~l~s~s~D~~v   85 (268)
                      ..|.+.|.+++|+|   +|++|++++ ++.+++|+..++    +.+..+.+|.+. |.+++|+|  ++.++++++.|++|
T Consensus        15 ~~~~~~v~~~~~sp---dg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v   90 (615)
T 1pgu_A           15 STQRNFTTHLSYDP---TTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKV   90 (615)
T ss_dssp             CCCTTCCCCCEEET---TTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEE
T ss_pred             CCccCceeEEEECC---CCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEE
Confidence            47999999999995   899999998 889999999999    899999999999 99999999  99999999999999


Q ss_pred             EEEeCCCC--------Ceeeeec-cCCeEEEEEECCCCCEEEEeeCC----CeEEEEECCCCCCCCeEecCCcccEEEEE
Q 024372           86 KLWDALTG--------DEKHSFE-HKHIVRACAFSEDTHLLLTGGFE----KILRIFDLNRPDAPPREVGNSSGSIRTVA  152 (268)
Q Consensus        86 ~iw~~~~~--------~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d----~~i~~~d~~~~~~~~~~~~~~~~~v~~~~  152 (268)
                      ++||+.++        .....+. |...|.+++|+|+++.|++++.+    +.|++||..   ........|.+.+.+++
T Consensus        91 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~---~~~~~~~~~~~~v~~~~  167 (615)
T 1pgu_A           91 IVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG---NSLGEVSGHSQRINACH  167 (615)
T ss_dssp             EEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTC---CEEEECCSCSSCEEEEE
T ss_pred             EEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECC---CcceeeecCCccEEEEE
Confidence            99999754        3444443 78899999999999999999988    688888842   23445567888999999


Q ss_pred             EeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecC-CC---CEEEEEECCC-CcEEEE-eCCCeEEEEeCCCceeeeEE-e
Q 024372          153 WLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KS---PVTSAEVSRD-GRYITT-ADGSSVKFWDANHFGLVKGY-N  225 (268)
Q Consensus       153 ~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-~~---~v~~~~~s~~-g~~l~~-~~~~~v~~wd~~~~~~~~~~-~  225 (268)
                      |+|++..++++++.|+.|++||+++++.+..+.. ..   .+.+++|+|+ ++++++ +.++.|++||+++.+.+..+ .
T Consensus       168 ~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  247 (615)
T 1pgu_A          168 LKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIED  247 (615)
T ss_dssp             ECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCB
T ss_pred             ECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecc
Confidence            9999887788888899999999999999988874 44   6999999999 988775 56899999999998888887 3


Q ss_pred             ----CCCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEeec
Q 024372          226 ----MPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       226 ----~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~~  266 (268)
                          ....+..+.+.  ++++|++++.|+.|++||+.+++.+..+
T Consensus       248 ~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~  290 (615)
T 1pgu_A          248 DQEPVQGGIFALSWL--DSQKFATVGADATIRVWDVTTSKCVQKW  290 (615)
T ss_dssp             TTBCCCSCEEEEEES--SSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             cccccCCceEEEEEc--CCCEEEEEcCCCcEEEEECCCCcEEEEE
Confidence                33445566666  6999999999999999999998887653

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.9e-34  Score=266.78  Aligned_cols=240  Identities=12%  Similarity=0.096  Sum_probs=197.6

Q ss_pred             eeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCC
Q 024372           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL   91 (268)
Q Consensus        12 ~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~   91 (268)
                      ..||.+.|++++|+|   +|++||+|+.|++|++|+...++.+..+. |..+|.+++|+| +.+|++++.|++|++||+.
T Consensus        13 ~~gh~~~V~~lafsp---dg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~   87 (902)
T 2oaj_A           13 KYGMSSKPIAAAFDF---TQNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLY   87 (902)
T ss_dssp             EEECSSCEEEEEEET---TTTEEEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEET-TTEEEEEETTCEEEEEETT
T ss_pred             ccCCCCCcEEEEECC---CCCEEEEEeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcC-CCEEEEEECcCeEEEEECC
Confidence            359999999999995   89999999999999999998887766554 888999999999 7899999999999999999


Q ss_pred             CCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCC----------eEecCCcccEEEEEEeCCCCcEE
Q 024372           92 TGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP----------REVGNSSGSIRTVAWLHSDQTIL  161 (268)
Q Consensus        92 ~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~~~  161 (268)
                      ++++...+.+...|.+++|+|+++++++|+.|+.|++||++.+....          .....|.+.|.+++|+|.+..++
T Consensus        88 ~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l  167 (902)
T 2oaj_A           88 SQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTV  167 (902)
T ss_dssp             TCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEE
T ss_pred             CCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEE
Confidence            99998888888899999999999999999999999999997653210          11234778999999999776677


Q ss_pred             EEeeCCCeEEEEeCCCCceEEeecCC-------------------CCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceee
Q 024372          162 SSCTDSGGVRLWDARSGKIVQTLETK-------------------SPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLV  221 (268)
Q Consensus       162 ~~~~~d~~i~iwd~~~~~~~~~~~~~-------------------~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~  221 (268)
                      ++++.|+.| +||++++++++.+..+                   ..|.+++|+|+|++|++ +.|+.|++||+++++++
T Consensus       168 ~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~  246 (902)
T 2oaj_A          168 LISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMI  246 (902)
T ss_dssp             EEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEE
T ss_pred             EEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEE
Confidence            788889999 9999999998887654                   56999999999998876 57899999999988776


Q ss_pred             eEEeC-----C-------------C-CceeeEEcC---CC-CCEEEeccCCC-----eEEEEEC
Q 024372          222 KGYNM-----P-------------C-NTESASLEP---KL-GNIFIAGGEDM-----WVHVFDF  257 (268)
Q Consensus       222 ~~~~~-----~-------------~-~~~~~~~~~---~~-~~~~~~gs~d~-----~i~~wd~  257 (268)
                      .....     +             . .+..++|.+   ++ +.++++|+.|.     .+.+|++
T Consensus       247 ~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~  310 (902)
T 2oaj_A          247 MARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDL  310 (902)
T ss_dssp             EEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEE
T ss_pred             EEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEec
Confidence            53221     1             1 244566643   12 35777887763     7889984

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=2.7e-33  Score=271.80  Aligned_cols=252  Identities=25%  Similarity=0.451  Sum_probs=217.2

Q ss_pred             cEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEE
Q 024372            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLW   88 (268)
Q Consensus         9 ~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw   88 (268)
                      .+.+.+|.+.|++++|+|   +|++||+|+.|++|++||..+++.+.++.+|.+.|.+++|+|++.++++++.|++|++|
T Consensus       608 ~~~~~~h~~~v~~~~~s~---~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vw  684 (1249)
T 3sfz_A          608 RLVVRPHTDAVYHACFSQ---DGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIW  684 (1249)
T ss_dssp             SEEECCCSSCEEEEEECT---TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             eEEEecccccEEEEEECC---CCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEE
Confidence            345679999999999985   89999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCeeeeec-cCCeEEEEEECC--CCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEee
Q 024372           89 DALTGDEKHSFE-HKHIVRACAFSE--DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT  165 (268)
Q Consensus        89 ~~~~~~~~~~~~-~~~~v~~v~~~~--~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  165 (268)
                      |+.++.....+. |...|.+++|+|  ++.++++|+.|+.|++||++++.. ......|.+.|.+++|+|++. ++++++
T Consensus       685 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~-~~~~~~h~~~v~~~~~sp~~~-~l~s~s  762 (1249)
T 3sfz_A          685 DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC-RNTMFGHTNSVNHCRFSPDDE-LLASCS  762 (1249)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE-EEEECCCSSCEEEEEECSSTT-EEEEEE
T ss_pred             ECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcch-hheecCCCCCEEEEEEecCCC-EEEEEE
Confidence            999999888774 888999999999  567999999999999999987543 345557888999999998776 566677


Q ss_pred             CCCeEEEEeCCCCceEEeecCC--------------CCEEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEeC--CCC
Q 024372          166 DSGGVRLWDARSGKIVQTLETK--------------SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNM--PCN  229 (268)
Q Consensus       166 ~d~~i~iwd~~~~~~~~~~~~~--------------~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~--~~~  229 (268)
                      .||.|++||+++++....+...              ..+.+++|+|+|++++++.++.+.+||+.+...+..+..  ...
T Consensus       763 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~  842 (1249)
T 3sfz_A          763 ADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHST  842 (1249)
T ss_dssp             SSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSC
T ss_pred             CCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCc
Confidence            7899999999999887665421              257789999999999888889999999998887776653  334


Q ss_pred             ceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEeec
Q 024372          230 TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       230 ~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~~  266 (268)
                      ...+.+++ +++++++|+.|+.|++||+.+++.+...
T Consensus       843 v~~~~~sp-~~~~l~~~~~dg~v~vwd~~~~~~~~~~  878 (1249)
T 3sfz_A          843 IQYCDFSP-YDHLAVIALSQYCVELWNIDSRLKVADC  878 (1249)
T ss_dssp             CCEEEECS-STTEEEEECSSSCEEEEETTTTEEEEEE
T ss_pred             eEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCceeeec
Confidence            56677776 6999999999999999999988877653

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6e-34  Score=253.23  Aligned_cols=246  Identities=11%  Similarity=0.020  Sum_probs=187.6

Q ss_pred             EeeecCCCeeeEEEecC---CCCCcEEEEEeCCCCeEEeeCCCCCe-----------EEEeeCccCcEEEEEecCCCcEE
Q 024372           11 VCHGHSRPVVDLFYSPI---TPDGFFLVSASKDSSPMLRNGETGDW-----------IGTFEGHKGAVWSCCLDANALFS   76 (268)
Q Consensus        11 ~~~~h~~~v~~~~f~~~---~~dg~~l~s~s~d~~i~iw~~~~~~~-----------~~~~~~h~~~V~~~~~~~~~~~l   76 (268)
                      .+.+|.+.|.+++|+|.   .+++.+||+|+.|++|++||+.+++.           ..++.+|...|.+++|++++ .|
T Consensus       202 ~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~l  280 (524)
T 2j04_B          202 TIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TV  280 (524)
T ss_dssp             EEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EE
T ss_pred             EEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eE
Confidence            35578899999999984   23578999999999999999987642           24788999999999999865 78


Q ss_pred             EEeeCCCcEEEEeCCCCC-eeeee-ccCCeEEEE--EECCCC-CEEEEeeCCCeEEEEECCCCCCCCeEecCCc-ccEEE
Q 024372           77 ASGSADFTAKLWDALTGD-EKHSF-EHKHIVRAC--AFSEDT-HLLLTGGFEKILRIFDLNRPDAPPREVGNSS-GSIRT  150 (268)
Q Consensus        77 ~s~s~D~~v~iw~~~~~~-~~~~~-~~~~~v~~v--~~~~~~-~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~-~~v~~  150 (268)
                      ++|+.||+|++||+.++. +...+ .|...|.++  .|+|++ ++|+||+.|++|++||+++++.......+.. +.+.+
T Consensus       281 asgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~  360 (524)
T 2j04_B          281 VCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVP  360 (524)
T ss_dssp             EEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCC
T ss_pred             EEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccc
Confidence            999999999999998764 33333 588899999  578887 8999999999999999976543322222222 34788


Q ss_pred             EEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeec-CCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCc-----e----
Q 024372          151 VAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHF-----G----  219 (268)
Q Consensus       151 ~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~-----~----  219 (268)
                      ++|+|++.. ++++++|++|+|||++++.++.++. +...|.+++|+|+|++|++ +.|++|++||+...     +    
T Consensus       361 v~fsp~~~~-l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~  439 (524)
T 2j04_B          361 VVYCPQIYS-YIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSA  439 (524)
T ss_dssp             EEEETTTTE-EEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC-----
T ss_pred             eEeCCCcCe-EEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCcc
Confidence            999998765 5566677999999999999877665 5567999999999988765 57899999986321     0    


Q ss_pred             -----eeeEEe-------------------------------CCCCceeeEEcCCC--CCEEEeccCCCeEEEEECC
Q 024372          220 -----LVKGYN-------------------------------MPCNTESASLEPKL--GNIFIAGGEDMWVHVFDFH  258 (268)
Q Consensus       220 -----~~~~~~-------------------------------~~~~~~~~~~~~~~--~~~~~~gs~d~~i~~wd~~  258 (268)
                           .+....                               ....+.+++|+|+.  +.++++|+.|+.|+||++.
T Consensus       440 ~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~  516 (524)
T 2j04_B          440 TQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLS  516 (524)
T ss_dssp             -CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECS
T ss_pred             ceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcc
Confidence                 010000                               01123456777742  4599999999999999986

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.7e-34  Score=246.13  Aligned_cols=226  Identities=23%  Similarity=0.380  Sum_probs=188.8

Q ss_pred             CCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeec-cCCeEEEEEECCCCCEEE
Q 024372           40 DSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLL  118 (268)
Q Consensus        40 d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~  118 (268)
                      +..+..|+..+..+.++|.+|.+.|.+++|+|++.+|+||+.|++|++||+.+++....+. |...|.+++|+|+++.|+
T Consensus        45 ~~~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~la  124 (380)
T 3iz6_a           45 GRTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVA  124 (380)
T ss_dssp             GGGCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEE
T ss_pred             cccccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEE
Confidence            3445568888888899999999999999999999999999999999999999988877765 777899999999999999


Q ss_pred             EeeCCCeEEEEECCCCC------CCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeec------C
Q 024372          119 TGGFEKILRIFDLNRPD------APPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE------T  186 (268)
Q Consensus       119 s~~~d~~i~~~d~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~------~  186 (268)
                      +|+.|+.+++||+....      ........|.+.+.++.|.|++...+++++.|++|++||+++++++..+.      +
T Consensus       125 s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h  204 (380)
T 3iz6_a          125 CGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGH  204 (380)
T ss_dssp             ECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSC
T ss_pred             EeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCC
Confidence            99999999999986421      12234557888899999999877777788889999999999999988762      3


Q ss_pred             CCCEEEEEECC-CCcEEEE-eCCCeEEEEeCCC-ceeeeEEeCCC-CceeeEEcCCCCCEEEeccCCCeEEEEECCCCcE
Q 024372          187 KSPVTSAEVSR-DGRYITT-ADGSSVKFWDANH-FGLVKGYNMPC-NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ  262 (268)
Q Consensus       187 ~~~v~~~~~s~-~g~~l~~-~~~~~v~~wd~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~  262 (268)
                      ...+.++.++| ++.++++ +.|+.|++||++. ...+..+..+. .+..+.++| ++++|++||.|+.|++||+++|+.
T Consensus       205 ~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~lwd~~~~~~  283 (380)
T 3iz6_a          205 TADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFP-DGQRFGTGSDDGTCRLFDMRTGHQ  283 (380)
T ss_dssp             CSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECT-TSSEEEEECSSSCEEEEETTTTEE
T ss_pred             ccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEec-CCCeEEEEcCCCeEEEEECCCCcE
Confidence            45699999987 7777765 5789999999984 45666776554 456777777 699999999999999999999988


Q ss_pred             Eeec
Q 024372          263 IAIT  266 (268)
Q Consensus       263 ~~~~  266 (268)
                      +..+
T Consensus       284 ~~~~  287 (380)
T 3iz6_a          284 LQVY  287 (380)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            7654

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.1e-32  Score=237.68  Aligned_cols=243  Identities=16%  Similarity=0.208  Sum_probs=203.3

Q ss_pred             ecCCCe--eeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeC-ccCcEEEEEecCCCcEEEEeeCCCcEEEEeC
Q 024372           14 GHSRPV--VDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG-HKGAVWSCCLDANALFSASGSADFTAKLWDA   90 (268)
Q Consensus        14 ~h~~~v--~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~-h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~   90 (268)
                      +|...+  .+++|++     ..+++++.|++|++|+..+++....+.. |...|.+++|+|++.++++|+.|+.|++||+
T Consensus        89 ~~~~~~~~~~~~~s~-----~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~  163 (401)
T 4aez_A           89 GIIDDYYLNLLDWSN-----LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDV  163 (401)
T ss_dssp             TCCCCTTCBCEEECT-----TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             CCcCCceEEEEeecC-----CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEEC
Confidence            566553  4566652     4578899999999999999998887776 8899999999999999999999999999999


Q ss_pred             CCCCeeeee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCe
Q 024372           91 LTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG  169 (268)
Q Consensus        91 ~~~~~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~  169 (268)
                      .+++....+ .|...|.+++|  +++.+++|+.|+.|++||++...........|.+.+.+++|+|++. ++++++.|+.
T Consensus       164 ~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~  240 (401)
T 4aez_A          164 ESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGL-QLASGGNDNV  240 (401)
T ss_dssp             TTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSC
T ss_pred             cCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCC-EEEEEeCCCe
Confidence            998887777 48889999999  4679999999999999999855544556667889999999998654 5667778899


Q ss_pred             EEEEeCCCCceEEeec-CCCCEEEEEECCCC-cEEEEe---CCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEE
Q 024372          170 VRLWDARSGKIVQTLE-TKSPVTSAEVSRDG-RYITTA---DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFI  244 (268)
Q Consensus       170 i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~g-~~l~~~---~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (268)
                      |++||+++++.+..+. +...+.+++|+|++ .+++++   .|+.|++||+++.+.+..+..+.....+.+++ ++++++
T Consensus       241 v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~  319 (401)
T 4aez_A          241 VQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSP-HSKEIM  319 (401)
T ss_dssp             EEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECS-SSSEEE
T ss_pred             EEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECC-CCCeEE
Confidence            9999999999988875 45679999999976 455554   48999999999999998888777778888887 588888


Q ss_pred             e--ccCCCeEEEEECCCCcEEee
Q 024372          245 A--GGEDMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       245 ~--gs~d~~i~~wd~~~g~~~~~  265 (268)
                      +  |+.|+.|++||+.+++....
T Consensus       320 ~~~g~~dg~i~v~~~~~~~~~~~  342 (401)
T 4aez_A          320 STHGFPDNNLSIWSYSSSGLTKQ  342 (401)
T ss_dssp             EEECTTTCEEEEEEEETTEEEEE
T ss_pred             EEeecCCCcEEEEecCCccceeE
Confidence            7  56899999999988766543

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=8.1e-34  Score=242.13  Aligned_cols=242  Identities=11%  Similarity=0.115  Sum_probs=183.9

Q ss_pred             EeeecCCCeeeEEEecCCCCCcEEEEE-----------eCCCCeEEeeCCCCC-eE---EEe-----eCccCcEEEEEec
Q 024372           11 VCHGHSRPVVDLFYSPITPDGFFLVSA-----------SKDSSPMLRNGETGD-WI---GTF-----EGHKGAVWSCCLD   70 (268)
Q Consensus        11 ~~~~h~~~v~~~~f~~~~~dg~~l~s~-----------s~d~~i~iw~~~~~~-~~---~~~-----~~h~~~V~~~~~~   70 (268)
                      .|.+|+..|.+++|+     +..+++|           +.|+++++|+..+.+ .+   ...     ..+...++.++|+
T Consensus        68 ~l~~~~~~v~s~~~~-----~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fS  142 (365)
T 4h5i_A           68 ALEDNDDSPTAIDAS-----KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYIS  142 (365)
T ss_dssp             ECCTTSCCCCEEEEE-----TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEEC
T ss_pred             EccCCCCceEEEEeC-----CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEc
Confidence            356788889988885     3456655           567889999876543 11   111     2345568999999


Q ss_pred             CCCcEEE--EeeCCCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCe-EecCCccc
Q 024372           71 ANALFSA--SGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR-EVGNSSGS  147 (268)
Q Consensus        71 ~~~~~l~--s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~-~~~~~~~~  147 (268)
                      ||+++++  +++.|++|+|||+.++.++..+.|...|.+++|+|+++++++++.++. .+|+..++..... ....|...
T Consensus       143 pDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~-~~~~~~~~~~~~~~~~~~~~~~  221 (365)
T 4h5i_A          143 REGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGSSL-EVISTVTGSCIARKTDFDKNWS  221 (365)
T ss_dssp             TTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSSCE-EEEETTTCCEEEEECCCCTTEE
T ss_pred             CCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccceeE-EEEEeccCcceeeeecCCCCCC
Confidence            9999865  566899999999999999999999999999999999999999986655 5555544433222 23456778


Q ss_pred             EEEEEEeCCCCcEEEEeeCCC---eEEEEeCCCCceE----Eeec-CCCCEEEEEECCCCcEEEEe-CCCeEEEEeCCCc
Q 024372          148 IRTVAWLHSDQTILSSCTDSG---GVRLWDARSGKIV----QTLE-TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHF  218 (268)
Q Consensus       148 v~~~~~~~~~~~~~~~~~~d~---~i~iwd~~~~~~~----~~~~-~~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~  218 (268)
                      +.+++|+|++..+++++.+.+   .+++||+......    ..+. +..+|.+++|+|+|++|+++ .|+.|++||++++
T Consensus       222 v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~  301 (365)
T 4h5i_A          222 LSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDL  301 (365)
T ss_dssp             EEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTT
T ss_pred             EEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCC
Confidence            999999998876665554422   6899998876542    2333 45679999999999998864 7899999999999


Q ss_pred             eeeeEE-eCCC-CceeeEEcCCCCCEEEeccCCCeEEEEECCC
Q 024372          219 GLVKGY-NMPC-NTESASLEPKLGNIFIAGGEDMWVHVFDFHT  259 (268)
Q Consensus       219 ~~~~~~-~~~~-~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~  259 (268)
                      ++++.+ ..+. .+.+++|+| +|++|++||.|++|+|||+..
T Consensus       302 ~~~~~~~~gH~~~V~~v~fSp-dg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          302 SMSKIFKQAHSFAITEVTISP-DSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             EEEEEETTSSSSCEEEEEECT-TSCEEEEEETTSEEEEEECCT
T ss_pred             cEEEEecCcccCCEEEEEECC-CCCEEEEEeCCCeEEEEEcCC
Confidence            988876 4444 456777777 799999999999999999853

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=2.5e-32  Score=237.69  Aligned_cols=231  Identities=18%  Similarity=0.317  Sum_probs=194.1

Q ss_pred             ecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCC
Q 024372           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG   93 (268)
Q Consensus        14 ~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~   93 (268)
                      +|..+|.+++|     +|++|++|+.|++|++||..+++.+..+.+|.+.|.+++|  ++.++++|+.||+|++||+.++
T Consensus       131 ~~~~~v~~~~~-----d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~  203 (435)
T 1p22_A          131 ETSKGVYCLQY-----DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG  203 (435)
T ss_dssp             SSCCCEEEEEC-----CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSC
T ss_pred             CCCCcEEEEEE-----CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCC
Confidence            57778998877     6789999999999999999999999999999999999988  6789999999999999999999


Q ss_pred             Ceeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCC--eEecCCcccEEEEEEeCCCCcEEEEeeCCCeE
Q 024372           94 DEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP--REVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (268)
Q Consensus        94 ~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i  170 (268)
                      +....+. |...|.++.|++  ..+++|+.|+.|++||++.+....  .....|.+.+.++++.   +.++++++.|+.|
T Consensus       204 ~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i  278 (435)
T 1p22_A          204 EMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTI  278 (435)
T ss_dssp             CEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE---TTEEEEEETTSEE
T ss_pred             cEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC---CCEEEEEeCCCeE
Confidence            8877774 778899999974  589999999999999998655432  4455788899999982   3466777788999


Q ss_pred             EEEeCCCCceEEeecC-CCCEEEEEECCCCcEEE-EeCCCeEEEEeCCCceeeeEEeCCCCce-eeEEcCCCCCEEEecc
Q 024372          171 RLWDARSGKIVQTLET-KSPVTSAEVSRDGRYIT-TADGSSVKFWDANHFGLVKGYNMPCNTE-SASLEPKLGNIFIAGG  247 (268)
Q Consensus       171 ~iwd~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~-~~~~~~v~~wd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~gs  247 (268)
                      ++||+++++++..+.. ...+.++.++  +++++ ++.|+.|++||+++++++..+..+.... .+.+   ++.+|++|+
T Consensus       279 ~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~---~~~~l~sg~  353 (435)
T 1p22_A          279 KVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF---DNKRIVSGA  353 (435)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC---CSSEEEEEE
T ss_pred             EEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe---cCCEEEEEe
Confidence            9999999999998874 4568888884  45555 5678999999999998888887655433 3333   588999999


Q ss_pred             CCCeEEEEECCCCc
Q 024372          248 EDMWVHVFDFHTGE  261 (268)
Q Consensus       248 ~d~~i~~wd~~~g~  261 (268)
                      .|+.|++||+.+++
T Consensus       354 ~dg~i~vwd~~~~~  367 (435)
T 1p22_A          354 YDGKIKVWDLVAAL  367 (435)
T ss_dssp             TTSCEEEEEHHHHT
T ss_pred             CCCcEEEEECCCCC
Confidence            99999999997665

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=5.7e-33  Score=230.16  Aligned_cols=208  Identities=19%  Similarity=0.246  Sum_probs=169.9

Q ss_pred             ecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC--eEEEeeCccCcEEEEEecCC--CcEEEEeeCCC
Q 024372            8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDAN--ALFSASGSADF   83 (268)
Q Consensus         8 ~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~--~~~~~~~h~~~V~~~~~~~~--~~~l~s~s~D~   83 (268)
                      ....+.+|+++|.+++|+|. .+|++||+|+.|++|++||..+++  .+..+.+|...|.+++|+|+  +.++++++.|+
T Consensus        45 ~~~~l~gH~~~V~~v~~s~~-~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~  123 (297)
T 2pm7_B           45 LIDTLTGHEGPVWRVDWAHP-KFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDG  123 (297)
T ss_dssp             CCEEECCCSSCEEEEEECCG-GGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred             EEEEEccccCCeEEEEecCC-CcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCC
Confidence            34567799999999999752 248899999999999999999874  56778899999999999997  78999999999


Q ss_pred             cEEEEeCCCCCe---eeeeccCCeEEEEEECCC-------------CCEEEEeeCCCeEEEEECCCCCC---CCeEecCC
Q 024372           84 TAKLWDALTGDE---KHSFEHKHIVRACAFSED-------------THLLLTGGFEKILRIFDLNRPDA---PPREVGNS  144 (268)
Q Consensus        84 ~v~iw~~~~~~~---~~~~~~~~~v~~v~~~~~-------------~~~l~s~~~d~~i~~~d~~~~~~---~~~~~~~~  144 (268)
                      +|++||+.++..   .....|...|.+++|+|+             ++.|++|+.|+.|++||++.+..   ....+..|
T Consensus       124 ~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H  203 (297)
T 2pm7_B          124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH  203 (297)
T ss_dssp             EEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC
T ss_pred             cEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCC
Confidence            999999987532   223358889999999996             57999999999999999875432   12345578


Q ss_pred             cccEEEEEEeCCC--CcEEEEeeCCCeEEEEeCCCCc---eEEee---cCCCCEEEEEECCCCcEEEE-eCCCeEEEEeC
Q 024372          145 SGSIRTVAWLHSD--QTILSSCTDSGGVRLWDARSGK---IVQTL---ETKSPVTSAEVSRDGRYITT-ADGSSVKFWDA  215 (268)
Q Consensus       145 ~~~v~~~~~~~~~--~~~~~~~~~d~~i~iwd~~~~~---~~~~~---~~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~  215 (268)
                      .+.|.+++|+|++  +.++++++.|++|+|||+++++   ....+   .+...+.+++|+|+|++|++ +.|+.|++|+.
T Consensus       204 ~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~  283 (297)
T 2pm7_B          204 SDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE  283 (297)
T ss_dssp             SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred             CCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEE
Confidence            8899999999975  5678888999999999998753   12233   23456999999999998875 57899999997


Q ss_pred             C
Q 024372          216 N  216 (268)
Q Consensus       216 ~  216 (268)
                      .
T Consensus       284 ~  284 (297)
T 2pm7_B          284 N  284 (297)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-33  Score=244.17  Aligned_cols=240  Identities=13%  Similarity=0.107  Sum_probs=188.9

Q ss_pred             eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCC---CCCeEEEeeCc------------cCcEEEEE--ecCCCcE
Q 024372           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGE---TGDWIGTFEGH------------KGAVWSCC--LDANALF   75 (268)
Q Consensus        13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~---~~~~~~~~~~h------------~~~V~~~~--~~~~~~~   75 (268)
                      .+|..+|.+++|+|   ++++|++|+.|++|++||+.   +++.+..+.+|            ...+.++.  +++++.+
T Consensus       108 ~~h~~~v~~~~~~~---~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (437)
T 3gre_A          108 YDCSSTVTQITMIP---NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSL  184 (437)
T ss_dssp             EECSSCEEEEEECT---TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEE
T ss_pred             ccCCCCEEEEEEeC---CCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCE
Confidence            37999999999995   88999999999999999984   67666555543            33444444  4577999


Q ss_pred             EEEeeCCCcEEEEeCCCCCeeeeec---cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEE
Q 024372           76 SASGSADFTAKLWDALTGDEKHSFE---HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVA  152 (268)
Q Consensus        76 l~s~s~D~~v~iw~~~~~~~~~~~~---~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~  152 (268)
                      +++++.|+.|++||+.+++....+.   |...|.+++|+|++++|++|+.|+.|++||++.+.........+...|.+++
T Consensus       185 l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~  264 (437)
T 3gre_A          185 LVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVE  264 (437)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEE
T ss_pred             EEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEE
Confidence            9999999999999999999888775   6789999999999999999999999999999865432222225667899998


Q ss_pred             EeCC---CCcEEEEeeCCCeEEEEeCCCCceEEeecC---------------------------CCCEEEEEECCCCcEE
Q 024372          153 WLHS---DQTILSSCTDSGGVRLWDARSGKIVQTLET---------------------------KSPVTSAEVSRDGRYI  202 (268)
Q Consensus       153 ~~~~---~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~---------------------------~~~v~~~~~s~~g~~l  202 (268)
                      |+|.   ++.++++++.|+.|++||+++++++..+..                           ...+.+++++ ++++|
T Consensus       265 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l  343 (437)
T 3gre_A          265 VCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKIL  343 (437)
T ss_dssp             ECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEE
T ss_pred             eccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEE
Confidence            7753   455788888899999999999998877652                           2237788999 66766


Q ss_pred             EE-eCCCeEEEEeCCCceeeeEEeC--------------------------------------CCCceeeEEcCC-CCCE
Q 024372          203 TT-ADGSSVKFWDANHFGLVKGYNM--------------------------------------PCNTESASLEPK-LGNI  242 (268)
Q Consensus       203 ~~-~~~~~v~~wd~~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~-~~~~  242 (268)
                      ++ +.|+.|++||+++.+.+..+..                                      ...+..+.+.+. .+.+
T Consensus       344 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~  423 (437)
T 3gre_A          344 LTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPL  423 (437)
T ss_dssp             EEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEE
T ss_pred             EecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceE
Confidence            65 4689999999988776655543                                      223445566653 3779


Q ss_pred             EEeccCCCeEEEEE
Q 024372          243 FIAGGEDMWVHVFD  256 (268)
Q Consensus       243 ~~~gs~d~~i~~wd  256 (268)
                      |++|+.||.|++|+
T Consensus       424 l~s~~~dG~I~iw~  437 (437)
T 3gre_A          424 LVACDNSGLIGIFQ  437 (437)
T ss_dssp             EEEEETTSCEEEEC
T ss_pred             EEEEcCCceEEEeC
Confidence            99999999999995

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.2e-32  Score=248.31  Aligned_cols=254  Identities=13%  Similarity=0.194  Sum_probs=209.1

Q ss_pred             eecEEeeecCCC-eeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCC--------CeEEEeeCccCcEEEEEecCCCcEEE
Q 024372            7 AVPLVCHGHSRP-VVDLFYSPITPDGFFLVSASKDSSPMLRNGETG--------DWIGTFEGHKGAVWSCCLDANALFSA   77 (268)
Q Consensus         7 ~~~~~~~~h~~~-v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~--------~~~~~~~~h~~~V~~~~~~~~~~~l~   77 (268)
                      .....+.+|.+. |.+++|+|. ++|++|++|+.|++|++|+..++        +.+..+.+|..+|.+++|+|++.+++
T Consensus        54 ~~~~~~~~h~~~~v~~~~~sp~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  132 (615)
T 1pgu_A           54 PPVVQFTGHGSSVVTTVKFSPI-KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLC  132 (615)
T ss_dssp             CSEEEECTTTTSCEEEEEECSS-TTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             ccceEEecCCCceEEEEEECcC-CCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEE
Confidence            455667799999 999999831 18899999999999999999755        67888999999999999999999999


Q ss_pred             EeeCC----CcEEEEeCCCCCeeeee-ccCCeEEEEEECCCCC-EEEEeeCCCeEEEEECCCCCCCCeEecCCcc---cE
Q 024372           78 SGSAD----FTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTH-LLLTGGFEKILRIFDLNRPDAPPREVGNSSG---SI  148 (268)
Q Consensus        78 s~s~D----~~v~iw~~~~~~~~~~~-~~~~~v~~v~~~~~~~-~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~---~v  148 (268)
                      +++.|    +.|++||  .+.....+ .|...|.+++|+|+++ .+++++.|+.|++||+...+ ....+..|.+   .+
T Consensus       133 ~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~-~~~~~~~~~~~~~~v  209 (615)
T 1pgu_A          133 VVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK-FSASDRTHHKQGSFV  209 (615)
T ss_dssp             EEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE-EEEEECSSSCTTCCE
T ss_pred             EeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc-eeeeecccCCCCceE
Confidence            99988    6899998  44454444 4888999999999997 89999999999999987643 2344556777   89


Q ss_pred             EEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEee-----cCCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeee
Q 024372          149 RTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL-----ETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVK  222 (268)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~-----~~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~  222 (268)
                      .+++|+|+++.++++++.|+.|++||+++++.+..+     .+..++.+++|+ +++++++ +.|+.|++||+++.+.+.
T Consensus       210 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~  288 (615)
T 1pgu_A          210 RDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQ  288 (615)
T ss_dssp             EEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             EEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEE
Confidence            999999983456667777899999999999999988     556779999999 9888765 568999999999998888


Q ss_pred             EEeCCC----CceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEeec
Q 024372          223 GYNMPC----NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       223 ~~~~~~----~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~~  266 (268)
                      .+..+.    ........+ ++.++++|+.|+.|++||+.+++.+..+
T Consensus       289 ~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~  335 (615)
T 1pgu_A          289 KWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTI  335 (615)
T ss_dssp             EEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEE
T ss_pred             EEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEE
Confidence            887652    222222334 6899999999999999999988876654

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=4.9e-33  Score=239.67  Aligned_cols=238  Identities=19%  Similarity=0.286  Sum_probs=189.7

Q ss_pred             CeeeEEEecCCCCC-cEEEEEeCCCCeEEeeCCCC----CeEEEeeCccCcEEEEEecC-CCcEEEEeeCCCcEEEEeCC
Q 024372           18 PVVDLFYSPITPDG-FFLVSASKDSSPMLRNGETG----DWIGTFEGHKGAVWSCCLDA-NALFSASGSADFTAKLWDAL   91 (268)
Q Consensus        18 ~v~~~~f~~~~~dg-~~l~s~s~d~~i~iw~~~~~----~~~~~~~~h~~~V~~~~~~~-~~~~l~s~s~D~~v~iw~~~   91 (268)
                      ....++++|   +. .++++++.||.|+||+..+.    +.+..+.+|.+.|.+++|+| ++.++++|+.|++|++||+.
T Consensus        36 ~~~~~~~~~---~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~  112 (402)
T 2aq5_A           36 DSGFCAVNP---KFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIP  112 (402)
T ss_dssp             SSCSEEECS---SEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECC
T ss_pred             CCCcEEECC---CeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEcc
Confidence            444577775   33 34556899999999998654    34556889999999999999 89999999999999999998


Q ss_pred             CC-------Ceeeee-ccCCeEEEEEECCCC-CEEEEeeCCCeEEEEECCCCCCCCeEe--cCCcccEEEEEEeCCCCcE
Q 024372           92 TG-------DEKHSF-EHKHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAPPREV--GNSSGSIRTVAWLHSDQTI  160 (268)
Q Consensus        92 ~~-------~~~~~~-~~~~~v~~v~~~~~~-~~l~s~~~d~~i~~~d~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~  160 (268)
                      ++       .....+ .|...|.+++|+|++ ++|++++.|+.|++||+++++. ...+  ..|.+.+.+++|+|++.. 
T Consensus       113 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~-  190 (402)
T 2aq5_A          113 DGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAA-VLTLGPDVHPDTIYSVDWSRDGAL-  190 (402)
T ss_dssp             TTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEE-EEEECTTTCCSCEEEEEECTTSSC-
T ss_pred             CCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCc-cEEEecCCCCCceEEEEECCCCCE-
Confidence            87       344444 488899999999998 6999999999999999986543 3344  567889999999997665 


Q ss_pred             EEEeeCCCeEEEEeCCCCceEEee-cCC-CC-EEEEEECCCCcEEEEe----CCCeEEEEeCCCcee-eeEEe--CCCCc
Q 024372          161 LSSCTDSGGVRLWDARSGKIVQTL-ETK-SP-VTSAEVSRDGRYITTA----DGSSVKFWDANHFGL-VKGYN--MPCNT  230 (268)
Q Consensus       161 ~~~~~~d~~i~iwd~~~~~~~~~~-~~~-~~-v~~~~~s~~g~~l~~~----~~~~v~~wd~~~~~~-~~~~~--~~~~~  230 (268)
                      +++++.|+.|++||+++++.+..+ ..+ .. +.++.|+|++++++++    .++.|++||++..+. +....  .....
T Consensus       191 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v  270 (402)
T 2aq5_A          191 ICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGV  270 (402)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSC
T ss_pred             EEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCce
Confidence            555667799999999999998887 433 33 7899999999999876    689999999988654 33333  34456


Q ss_pred             eeeEEcCCCCCEEE-eccCCCeEEEEECCCCc
Q 024372          231 ESASLEPKLGNIFI-AGGEDMWVHVFDFHTGE  261 (268)
Q Consensus       231 ~~~~~~~~~~~~~~-~gs~d~~i~~wd~~~g~  261 (268)
                      ..+.+++ ++++++ +|+.|+.|++||+.+++
T Consensus       271 ~~~~~s~-~~~~l~~~g~~dg~i~i~d~~~~~  301 (402)
T 2aq5_A          271 LLPFFDP-DTNIVYLCGKGDSSIRYFEITSEA  301 (402)
T ss_dssp             EEEEEET-TTTEEEEEETTCSCEEEEEECSST
T ss_pred             eEEEEcC-CCCEEEEEEcCCCeEEEEEecCCC
Confidence            6777777 577765 66789999999999887

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=6.8e-32  Score=235.47  Aligned_cols=244  Identities=26%  Similarity=0.412  Sum_probs=201.2

Q ss_pred             eeecEEeeecCCCe-eeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCc
Q 024372            6 VAVPLVCHGHSRPV-VDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFT   84 (268)
Q Consensus         6 ~~~~~~~~~h~~~v-~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~   84 (268)
                      +..+..+.+|.+.| .++.|     +|++|++|+.|++|++||..+++.+.++.+|.+.|.+++|+  +.++++|+.|++
T Consensus       108 ~~~~~~l~~h~~~v~~~~~~-----~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~  180 (445)
T 2ovr_B          108 LKSPKVLKGHDDHVITCLQF-----CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRT  180 (445)
T ss_dssp             CCCCEEEECSTTSCEEEEEE-----ETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSC
T ss_pred             cceeEEecccCCCcEEEEEE-----cCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCe
Confidence            34556788999976 55554     57899999999999999999999999999999999999997  568999999999


Q ss_pred             EEEEeCCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEE
Q 024372           85 AKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS  163 (268)
Q Consensus        85 v~iw~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  163 (268)
                      |++||+.+++....+. |...|.++.|+  ++.+++|+.|+.|++||+++++. ......|...+.++.+  ++ .++++
T Consensus       181 i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~--~~-~~l~~  254 (445)
T 2ovr_B          181 LKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQC-LHVLMGHVAAVRCVQY--DG-RRVVS  254 (445)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCE-EEEEECCSSCEEEEEE--CS-SCEEE
T ss_pred             EEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcE-EEEEcCCcccEEEEEE--CC-CEEEE
Confidence            9999999998877775 78899999985  56899999999999999986543 3455567889999998  33 45666


Q ss_pred             eeCCCeEEEEeCCCCceEEeecC-CCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCC
Q 024372          164 CTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGN  241 (268)
Q Consensus       164 ~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (268)
                      ++.|+.|++||+++++++..+.. ...+.++.+  ++.++++ +.|+.|++||+++.+++..+..+..... ++.+ +++
T Consensus       255 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~-~~~~-~~~  330 (445)
T 2ovr_B          255 GAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS-GMEL-KDN  330 (445)
T ss_dssp             EETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEE-EEEE-ETT
T ss_pred             EcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEE-EEEE-eCC
Confidence            77889999999999999998874 456889988  6666654 5789999999999988888876544332 2233 478


Q ss_pred             EEEeccCCCeEEEEECCCCcEEeec
Q 024372          242 IFIAGGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       242 ~~~~gs~d~~i~~wd~~~g~~~~~~  266 (268)
                      ++++|+.|+.|++||+.+++.+..+
T Consensus       331 ~l~~~~~dg~i~vwd~~~~~~~~~~  355 (445)
T 2ovr_B          331 ILVSGNADSTVKIWDIKTGQCLQTL  355 (445)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEE
Confidence            9999999999999999999887654

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-33  Score=238.23  Aligned_cols=225  Identities=10%  Similarity=0.054  Sum_probs=178.8

Q ss_pred             CCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCC---------CCCeeeee
Q 024372           29 PDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL---------TGDEKHSF   99 (268)
Q Consensus        29 ~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~---------~~~~~~~~   99 (268)
                      +++.+|++|+.|++|++||..+++.+.++.  ...|.++.++|+   +++++.|+++++|+..         ++......
T Consensus        46 ~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~  120 (343)
T 3lrv_A           46 YDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREI  120 (343)
T ss_dssp             EEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEE
T ss_pred             CCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEe
Confidence            578999999999999999999999888886  567888888887   8999999999999765         44433333


Q ss_pred             --ccCCeEEEEEECC--CCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeC
Q 024372          100 --EHKHIVRACAFSE--DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA  175 (268)
Q Consensus       100 --~~~~~v~~v~~~~--~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~  175 (268)
                        .|...|.+++|+|  +++++++++.|+.|++||+++++........+...+.+++|+|++. ++++|+.||.|+|||+
T Consensus       121 ~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~-~lasg~~dg~i~iwd~  199 (343)
T 3lrv_A          121 EVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSL-LLALYSPDGILDVYNL  199 (343)
T ss_dssp             ECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSC-EEEEECTTSCEEEEES
T ss_pred             ecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCC-EEEEEcCCCEEEEEEC
Confidence              3557899999999  9999999999999999999876542222244566799999998764 6777778899999999


Q ss_pred             CCCceE-EeecC--CCCEEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEeC---CCC---ceeeEEcCCCCCEEEec
Q 024372          176 RSGKIV-QTLET--KSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNM---PCN---TESASLEPKLGNIFIAG  246 (268)
Q Consensus       176 ~~~~~~-~~~~~--~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~g  246 (268)
                      ++++.+ ..+..  ..+|.+++|+|+|.+|+++.++.|++||+++.+.+..+..   +..   ...++++| ++++|++|
T Consensus       200 ~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~  278 (343)
T 3lrv_A          200 SSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDD-SGKNMIAY  278 (343)
T ss_dssp             SCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECT-TSSEEEEE
T ss_pred             CCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECC-CCCEEEEe
Confidence            999887 66764  5679999999999999877666999999998766543331   111   12477777 69999998


Q ss_pred             cC-CCeEEEEECCCC
Q 024372          247 GE-DMWVHVFDFHTG  260 (268)
Q Consensus       247 s~-d~~i~~wd~~~g  260 (268)
                      +. |+.|++|++.++
T Consensus       279 s~~d~~i~v~~~~~~  293 (343)
T 3lrv_A          279 SNESNSLTIYKFDKK  293 (343)
T ss_dssp             ETTTTEEEEEEECTT
T ss_pred             cCCCCcEEEEEEccc
Confidence            87 999999998654

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.1e-32  Score=239.58  Aligned_cols=243  Identities=14%  Similarity=0.171  Sum_probs=188.5

Q ss_pred             ecEEeeecC------------CCeeeEEEecCCCCC--cEEEEEeCCCCeEEeeCCCCCeE-------------------
Q 024372            8 VPLVCHGHS------------RPVVDLFYSPITPDG--FFLVSASKDSSPMLRNGETGDWI-------------------   54 (268)
Q Consensus         8 ~~~~~~~h~------------~~v~~~~f~~~~~dg--~~l~s~s~d~~i~iw~~~~~~~~-------------------   54 (268)
                      ....+.+|.            ++|.+++|+|   ++  .+|++++.|++|++|+..+++..                   
T Consensus        73 ~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~---~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~  149 (447)
T 3dw8_B           73 VYSTFQSHEPEFDYLKSLEIEEKINKIRWLP---QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTV  149 (447)
T ss_dssp             EEEEEECCCCEEEGGGTEEECCCCCEEEECC---CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCC
T ss_pred             EecccccccccccccccccccCceEEEEEcC---CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccc
Confidence            344567898            8999999996   55  78999999999999998764432                   


Q ss_pred             --------------------EE-eeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCC-CCeeeee--------ccCCe
Q 024372           55 --------------------GT-FEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT-GDEKHSF--------EHKHI  104 (268)
Q Consensus        55 --------------------~~-~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~-~~~~~~~--------~~~~~  104 (268)
                                          .. +.+|...|.+++|+|++.++++| .|++|++||+.+ ......+        .|...
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  228 (447)
T 3dw8_B          150 TTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEV  228 (447)
T ss_dssp             CSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCC
T ss_pred             cceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcc
Confidence                                12 36899999999999999999998 799999999984 3343322        47788


Q ss_pred             EEEEEECCCC-CEEEEeeCCCeEEEEECCCCCCC---CeEecCCcc------------cEEEEEEeCCCCcEEEEeeCCC
Q 024372          105 VRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAP---PREVGNSSG------------SIRTVAWLHSDQTILSSCTDSG  168 (268)
Q Consensus       105 v~~v~~~~~~-~~l~s~~~d~~i~~~d~~~~~~~---~~~~~~~~~------------~v~~~~~~~~~~~~~~~~~~d~  168 (268)
                      |.+++|+|++ ++|++|+.|+.|++||++.+...   ...+..+..            .+.+++|+|++. +++++++ +
T Consensus       229 v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~-~  306 (447)
T 3dw8_B          229 ITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGR-YMMTRDY-L  306 (447)
T ss_dssp             EEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSS-EEEEEES-S
T ss_pred             eEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCC-EEEEeeC-C
Confidence            9999999998 99999999999999999876531   345555554            899999999765 4556677 9


Q ss_pred             eEEEEeCCC-CceEEeecCCCC----------------EEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEE------
Q 024372          169 GVRLWDARS-GKIVQTLETKSP----------------VTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGY------  224 (268)
Q Consensus       169 ~i~iwd~~~-~~~~~~~~~~~~----------------v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~------  224 (268)
                      .|+|||+++ ++++..+..+..                +..++|+|++++|+++ .|+.|++||++..+.+...      
T Consensus       307 ~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~  386 (447)
T 3dw8_B          307 SVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENN  386 (447)
T ss_dssp             EEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTC
T ss_pred             eEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeeccccc
Confidence            999999997 888777765543                2348999999988764 6899999999887655311      


Q ss_pred             ---------------------------eCCCCceeeEEcCCCCCEEEeccCCCeEEEEECC
Q 024372          225 ---------------------------NMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (268)
Q Consensus       225 ---------------------------~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~  258 (268)
                                                 .....+..++++| ++.+|++|+.|+ +++|..+
T Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p-~~~~la~~~~~~-~~~~~~~  445 (447)
T 3dw8_B          387 KPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHP-KENIIAVATTNN-LYIFQDK  445 (447)
T ss_dssp             CTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECS-SSSEEEEECSSC-EEEEECC
T ss_pred             ccccccCCccccccCCcccccccccccccCCceeEEEECC-CCCEEEEEecce-eeeeccc
Confidence                                       1122344577777 699999998887 8888754

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=2.4e-32  Score=237.88  Aligned_cols=241  Identities=18%  Similarity=0.300  Sum_probs=192.0

Q ss_pred             eeeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCc
Q 024372            5 KVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFT   84 (268)
Q Consensus         5 ~~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~   84 (268)
                      .......+.+|.++|.+++|     ++++|++|+.|++|++||..+++.+.++.+|.+.|.+++|++  .++++|+.|++
T Consensus       162 ~~~~~~~~~~h~~~v~~l~~-----~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~  234 (435)
T 1p22_A          162 TLECKRILTGHTGSVLCLQY-----DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRS  234 (435)
T ss_dssp             SCCEEEEECCCSSCEEEEEC-----CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSC
T ss_pred             CCeEEEEEcCCCCcEEEEEE-----CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCc
Confidence            33445567799999999998     567999999999999999999999999999999999999974  58899999999


Q ss_pred             EEEEeCCCCCee---e-eeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcE
Q 024372           85 AKLWDALTGDEK---H-SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTI  160 (268)
Q Consensus        85 v~iw~~~~~~~~---~-~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  160 (268)
                      |++||+.++...   . ...|...|.+++|  +++.+++|+.|+.|++||+++++. ...+..|...+.++.+.   +.+
T Consensus       235 i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~---~~~  308 (435)
T 1p22_A          235 IAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEF-VRTLNGHKRGIACLQYR---DRL  308 (435)
T ss_dssp             EEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEEE---TTE
T ss_pred             EEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcE-EEEEcCCCCcEEEEEeC---CCE
Confidence            999999887654   2 2347889999998  788999999999999999987643 44555678899999884   346


Q ss_pred             EEEeeCCCeEEEEeCCCCceEEeecC-CCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCce---------eeeEEeCCCC
Q 024372          161 LSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFG---------LVKGYNMPCN  229 (268)
Q Consensus       161 ~~~~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~---------~~~~~~~~~~  229 (268)
                      +++++.||.|++||+++++++.++.. ...+.++++  ++.++++ +.|+.|++||++...         ++..+..+..
T Consensus       309 l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~  386 (435)
T 1p22_A          309 VVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG  386 (435)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSS
T ss_pred             EEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCC
Confidence            77778889999999999999998875 456888888  6666655 578999999986654         5666655443


Q ss_pred             -ceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEE
Q 024372          230 -TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (268)
Q Consensus       230 -~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~  263 (268)
                       +..+.+   ++.+|++|+.|+.|++||+.++...
T Consensus       387 ~v~~l~~---~~~~l~s~s~Dg~i~iwd~~~~~~~  418 (435)
T 1p22_A          387 RVFRLQF---DEFQIVSSSHDDTILIWDFLNDPAA  418 (435)
T ss_dssp             CCCCEEE---CSSCEEECCSSSEEEEEC-------
T ss_pred             CeEEEEe---CCCEEEEEeCCCEEEEEECCCCCCc
Confidence             444555   5788999999999999999876543

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=8.8e-32  Score=234.74  Aligned_cols=242  Identities=23%  Similarity=0.354  Sum_probs=199.2

Q ss_pred             eecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEE
Q 024372            7 AVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAK   86 (268)
Q Consensus         7 ~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~   86 (268)
                      .....+.+|.++|.+++|+     +.+|++|+.|++|++||..+++.+.++.+|...|.+++++  +.++++|+.|++|+
T Consensus       150 ~~~~~~~~h~~~v~~~~~~-----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~  222 (445)
T 2ovr_B          150 KCLRTLVGHTGGVWSSQMR-----DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLR  222 (445)
T ss_dssp             CEEEECCCCSSCEEEEEEE-----TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEE
T ss_pred             cEEEEEcCCCCCEEEEEec-----CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEE
Confidence            3445567899999999996     3599999999999999999999999999999999999995  56799999999999


Q ss_pred             EEeCCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEee
Q 024372           87 LWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT  165 (268)
Q Consensus        87 iw~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  165 (268)
                      +||+.+++....+. |...|.++.|  +++.+++|+.|+.|++||+++++ .......|.+.+.++.+  + +..+++++
T Consensus       223 ~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~--~-~~~l~~~~  296 (445)
T 2ovr_B          223 VWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETET-CLHTLQGHTNRVYSLQF--D-GIHVVSGS  296 (445)
T ss_dssp             EEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTE-EEEEECCCSSCEEEEEE--C-SSEEEEEE
T ss_pred             EEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCc-EeEEecCCCCceEEEEE--C-CCEEEEEe
Confidence            99999988877764 7889999998  67889999999999999987654 23445567789999998  3 34566777


Q ss_pred             CCCeEEEEeCCCCceEEeecCC-CCEEEEEECCCCcEEE-EeCCCeEEEEeCCCceeeeEEeCC---C-CceeeEEcCCC
Q 024372          166 DSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYIT-TADGSSVKFWDANHFGLVKGYNMP---C-NTESASLEPKL  239 (268)
Q Consensus       166 ~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~-~~~~~~v~~wd~~~~~~~~~~~~~---~-~~~~~~~~~~~  239 (268)
                      .|+.|++||+++++++..+..+ ..+.++.++  +++++ ++.|+.|++||+++.+.+..+..+   . .+..+.+   +
T Consensus       297 ~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~  371 (445)
T 2ovr_B          297 LDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF---N  371 (445)
T ss_dssp             TTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE---C
T ss_pred             CCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEE---C
Confidence            8899999999999999988754 457666664  45655 567899999999998888888652   2 2334444   3


Q ss_pred             CCEEEeccCCCeEEEEECCCCcEEeec
Q 024372          240 GNIFIAGGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       240 ~~~~~~gs~d~~i~~wd~~~g~~~~~~  266 (268)
                      ++++++|+.|+.|++||+.+|+.+..+
T Consensus       372 ~~~l~s~~~dg~v~iwd~~~~~~~~~~  398 (445)
T 2ovr_B          372 KNFVITSSDDGTVKLWDLKTGEFIRNL  398 (445)
T ss_dssp             SSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCceeeee
Confidence            789999999999999999999987654

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=1.8e-31  Score=228.39  Aligned_cols=247  Identities=15%  Similarity=0.120  Sum_probs=205.0

Q ss_pred             EeeecCCCeeeEEEecCCCCCcEE-EEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEE-EEeeCCCcEEEE
Q 024372           11 VCHGHSRPVVDLFYSPITPDGFFL-VSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFS-ASGSADFTAKLW   88 (268)
Q Consensus        11 ~~~~h~~~v~~~~f~~~~~dg~~l-~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l-~s~s~D~~v~iw   88 (268)
                      .+.+| ..+.+++|+|   +|.+| ++++.|++|++||..+++.+..+..|. .+..++|+|++.++ ++++.|+.|++|
T Consensus        27 ~~~~~-~~~~~~~~s~---dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~  101 (391)
T 1l0q_A           27 TIPVG-SNPMGAVISP---DGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVI  101 (391)
T ss_dssp             EEECS-SSEEEEEECT---TSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             EeecC-CCcceEEECC---CCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEE
Confidence            34445 4589999985   88776 677899999999999999998888665 89999999999877 466678999999


Q ss_pred             eCCCCCeeeeeccCCeEEEEEECCCCCEE-EEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCC
Q 024372           89 DALTGDEKHSFEHKHIVRACAFSEDTHLL-LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS  167 (268)
Q Consensus        89 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~l-~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d  167 (268)
                      |+.+++....+.+...+.+++|+|+++.+ ++++.++.|++||+.+++.. .....+ ..+..++|+|++..+++++..+
T Consensus       102 d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~-~~~~~~-~~~~~~~~~~dg~~l~~~~~~~  179 (391)
T 1l0q_A          102 DTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVI-NTVSVG-RSPKGIAVTPDGTKVYVANFDS  179 (391)
T ss_dssp             ETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE-EEEECC-SSEEEEEECTTSSEEEEEETTT
T ss_pred             ECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEE-EEEecC-CCcceEEECCCCCEEEEEeCCC
Confidence            99999988888877788999999999977 68888999999998765432 233333 4568899999888887788888


Q ss_pred             CeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEe----CCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEE
Q 024372          168 GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA----DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIF  243 (268)
Q Consensus       168 ~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~----~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (268)
                      +.|++||+++++++..+.....+.+++++|+|++++++    .++.|++||+++.+.+..+..+..+..+.+.+ +++++
T Consensus       180 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~l  258 (391)
T 1l0q_A          180 MSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTP-DGKKV  258 (391)
T ss_dssp             TEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECT-TSSEE
T ss_pred             CEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEcc-CCCEE
Confidence            99999999999999888877789999999999877643    47899999999988888887766666777887 47655


Q ss_pred             -EeccCCCeEEEEECCCCcEEee
Q 024372          244 -IAGGEDMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       244 -~~gs~d~~i~~wd~~~g~~~~~  265 (268)
                       ++++.|+.|++||+.+++.+..
T Consensus       259 ~~s~~~d~~v~v~d~~~~~~~~~  281 (391)
T 1l0q_A          259 YVALSFXNTVSVIDTATNTITAT  281 (391)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEE
T ss_pred             EEEcCCCCEEEEEECCCCcEEEE
Confidence             6788999999999999988765

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=3.6e-32  Score=253.17  Aligned_cols=251  Identities=20%  Similarity=0.314  Sum_probs=208.2

Q ss_pred             eecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEE
Q 024372            7 AVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAK   86 (268)
Q Consensus         7 ~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~   86 (268)
                      .....+.+|..+|.+++|+|   +|++|++|+.|++|++|+..+++.+.++.+|.+.|.+++|+|++.++++++.|++|+
T Consensus        46 ~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  122 (814)
T 3mkq_A           46 VEVRSIQVTETPVRAGKFIA---RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK  122 (814)
T ss_dssp             EEEEEEECCSSCEEEEEEEG---GGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred             ceEEEEecCCCcEEEEEEeC---CCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEE
Confidence            34455678999999999996   899999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCC-Ceeeee-ccCCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeC--CCCcEE
Q 024372           87 LWDALTG-DEKHSF-EHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLH--SDQTIL  161 (268)
Q Consensus        87 iw~~~~~-~~~~~~-~~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~  161 (268)
                      +||+.++ .....+ .|...|.+++|+| +++.+++++.|+.|++||++.+........++...+.+++|+|  ++ .++
T Consensus       123 vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l  201 (814)
T 3mkq_A          123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDK-PYM  201 (814)
T ss_dssp             EEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTC-CEE
T ss_pred             EEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCC-CEE
Confidence            9999876 344444 4788999999999 8899999999999999999776554444455557899999988  54 456


Q ss_pred             EEeeCCCeEEEEeCCCCceEEeecC-CCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCC-CceeeEEcCC
Q 024372          162 SSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPC-NTESASLEPK  238 (268)
Q Consensus       162 ~~~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~-~~~~~~~~~~  238 (268)
                      ++++.||.|++||+++++++..+.. ...+.+++|+|++.++++ +.|+.|++||+.+++.+..+..+. ....++++|+
T Consensus       202 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~  281 (814)
T 3mkq_A          202 ITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPT  281 (814)
T ss_dssp             EEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTT
T ss_pred             EEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccC
Confidence            6777889999999999999988874 467999999999988776 468999999999988888877654 4566777774


Q ss_pred             CCCEEEeccCCCeEEEEECCCCc
Q 024372          239 LGNIFIAGGEDMWVHVFDFHTGE  261 (268)
Q Consensus       239 ~~~~~~~gs~d~~i~~wd~~~g~  261 (268)
                      ....+++++.|+.+.+|++..+.
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~  304 (814)
T 3mkq_A          282 GRKNYIASGFDNGFTVLSLGNDE  304 (814)
T ss_dssp             CGGGEEEEEETTEEEEEECSCCS
T ss_pred             CCceEEEEEeCCCEEEEEcCCCC
Confidence            33444555556678899976443

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1e-31  Score=225.48  Aligned_cols=238  Identities=13%  Similarity=0.060  Sum_probs=195.8

Q ss_pred             cEEeeecCCCeeeEEEecCCCCCc-EEEEEeCCCCeEEeeC-CCCCeEEEeeC--ccCcEEEEEecCCCcEEEEeeCCCc
Q 024372            9 PLVCHGHSRPVVDLFYSPITPDGF-FLVSASKDSSPMLRNG-ETGDWIGTFEG--HKGAVWSCCLDANALFSASGSADFT   84 (268)
Q Consensus         9 ~~~~~~h~~~v~~~~f~~~~~dg~-~l~s~s~d~~i~iw~~-~~~~~~~~~~~--h~~~V~~~~~~~~~~~l~s~s~D~~   84 (268)
                      +..+.+|..+|.+++|+|   +|+ +|++|+.|++|++|+. .+++. ..+.+  |...|.+++|+| +.++++++.|+.
T Consensus        49 ~~~~~~~~~~v~~~~~~~---~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~  123 (342)
T 1yfq_A           49 LLQSLRYKHPLLCCNFID---NTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGL  123 (342)
T ss_dssp             EEEEEECSSCEEEEEEEE---SSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSE
T ss_pred             ceeeeecCCceEEEEECC---CCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCe
Confidence            455568999999999996   799 9999999999999999 87765 67888  999999999999 999999999999


Q ss_pred             EEEEeCCC---------CCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCC-CCCCC-eEecCCcccEEEEEE
Q 024372           85 AKLWDALT---------GDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNR-PDAPP-REVGNSSGSIRTVAW  153 (268)
Q Consensus        85 v~iw~~~~---------~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~-~~~~~-~~~~~~~~~v~~~~~  153 (268)
                      |++||+.+         +++...+.+...+.+++|+|++  +++++.|+.|++||++. ..... .....+...+.+++|
T Consensus       124 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~  201 (342)
T 1yfq_A          124 IEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVAL  201 (342)
T ss_dssp             EEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEE
T ss_pred             EEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEE
Confidence            99999987         7777777788899999999887  88999999999999986 44322 234456778999999


Q ss_pred             eC-CCCcEEEEeeCCCeEEEEeCCCC------ceEEeecCC----------CCEEEEEECCCCcEEEE-eCCCeEEEEeC
Q 024372          154 LH-SDQTILSSCTDSGGVRLWDARSG------KIVQTLETK----------SPVTSAEVSRDGRYITT-ADGSSVKFWDA  215 (268)
Q Consensus       154 ~~-~~~~~~~~~~~d~~i~iwd~~~~------~~~~~~~~~----------~~v~~~~~s~~g~~l~~-~~~~~v~~wd~  215 (268)
                      +| ++. ++++++.||.|++||++..      +....+..+          ..+.+++|+|++++|++ +.|+.|++||+
T Consensus       202 ~~~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~  280 (342)
T 1yfq_A          202 LPKEQE-GYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL  280 (342)
T ss_dssp             CSGGGC-EEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred             CCCCCC-EEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcC
Confidence            98 665 5566677899999999876      666666543          27999999999988765 56899999999


Q ss_pred             CCceeeeEEeCC-CCceeeEEcCCCCCEEEeccCCCe-EEEEE
Q 024372          216 NHFGLVKGYNMP-CNTESASLEPKLGNIFIAGGEDMW-VHVFD  256 (268)
Q Consensus       216 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~gs~d~~-i~~wd  256 (268)
                      ++.+++..+..+ ........ + ++++|++|+.|+. .+.|.
T Consensus       281 ~~~~~~~~~~~~h~~~v~~~~-~-~~~~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          281 QTRKKIKNFAKFNEDSVVKIA-C-SDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             TTTEEEEECCCCSSSEEEEEE-E-CSSEEEEEEECTHHHHCSS
T ss_pred             ccHhHhhhhhcccCCCceEec-C-CCCeEEEEecCCccccccc
Confidence            999888887765 44333222 4 7999999999998 44444

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-31  Score=232.22  Aligned_cols=239  Identities=10%  Similarity=0.069  Sum_probs=193.4

Q ss_pred             CCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC---eEEEeeCc--------------------------------
Q 024372           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD---WIGTFEGH--------------------------------   60 (268)
Q Consensus        16 ~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~---~~~~~~~h--------------------------------   60 (268)
                      ..|+.+++|+|   +|++|+++ .++.|++||..+|+   .+..+..|                                
T Consensus         4 ~~p~~~v~~s~---dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (450)
T 2vdu_B            4 IHPLQNLLTSR---DGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSN   79 (450)
T ss_dssp             ECCCCEEEECS---SSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-------------------------------
T ss_pred             cccEEEEEecC---CCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccC
Confidence            45889999985   89866655 67899999999998   77766643                                


Q ss_pred             ----------------------cCcEEEEEecCCCcEE-EEeeCCCcEEEEeCC--CCCeeeee---ccCCeEEEEEECC
Q 024372           61 ----------------------KGAVWSCCLDANALFS-ASGSADFTAKLWDAL--TGDEKHSF---EHKHIVRACAFSE  112 (268)
Q Consensus        61 ----------------------~~~V~~~~~~~~~~~l-~s~s~D~~v~iw~~~--~~~~~~~~---~~~~~v~~v~~~~  112 (268)
                                            .+.|.+++|+|++.+| ++++.|++|++||+.  ++.....+   .+...|.+++|+|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp  159 (450)
T 2vdu_B           80 KGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE  159 (450)
T ss_dssp             --------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT
T ss_pred             cCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC
Confidence                                  3379999999999986 899999999999998  77777766   4678899999999


Q ss_pred             CCCEEEEeeCCCeEEEEECCCCCCCC---eEecCCcccEEEEEEeCC--CCcEEEEeeCCCeEEEEeCCCCceEEeec--
Q 024372          113 DTHLLLTGGFEKILRIFDLNRPDAPP---REVGNSSGSIRTVAWLHS--DQTILSSCTDSGGVRLWDARSGKIVQTLE--  185 (268)
Q Consensus       113 ~~~~l~s~~~d~~i~~~d~~~~~~~~---~~~~~~~~~v~~~~~~~~--~~~~~~~~~~d~~i~iwd~~~~~~~~~~~--  185 (268)
                      +++.|++|+.++.+++|++.......   .....|.+.+.+++|+|+  ++.++++++.|+.|++||+++++++..+.  
T Consensus       160 ~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~  239 (450)
T 2vdu_B          160 DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFG  239 (450)
T ss_dssp             TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCC
T ss_pred             CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecC
Confidence            99999999999999999987654321   234457789999999997  24466677788999999999999887743  


Q ss_pred             CCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCC--------------------------CCceeeEEcCC
Q 024372          186 TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMP--------------------------CNTESASLEPK  238 (268)
Q Consensus       186 ~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~--------------------------~~~~~~~~~~~  238 (268)
                      +...+.+++|+ ++++|++ +.|+.|++||+++++++..+...                          .....+.+.+ 
T Consensus       240 h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-  317 (450)
T 2vdu_B          240 HKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK-  317 (450)
T ss_dssp             CSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS-
T ss_pred             CCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC-
Confidence            55679999999 9988876 57899999999998888777532                          1234556666 


Q ss_pred             CCCEEEecc-CCCeEEEEEC--CCC
Q 024372          239 LGNIFIAGG-EDMWVHVFDF--HTG  260 (268)
Q Consensus       239 ~~~~~~~gs-~d~~i~~wd~--~~g  260 (268)
                      +++++++++ .|+.|++||+  .++
T Consensus       318 ~~~~l~~~~~~d~~i~iw~~~~~~~  342 (450)
T 2vdu_B          318 NLPFVAFFVEATKCIIILEMSEKQK  342 (450)
T ss_dssp             SSSEEEEEETTCSEEEEEEECSSST
T ss_pred             CCCEEEEEECCCCeEEEEEeccCCC
Confidence            688888887 8999999999  555

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=2.3e-31  Score=226.09  Aligned_cols=242  Identities=13%  Similarity=0.171  Sum_probs=183.5

Q ss_pred             eeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEE-EEeeCCCcEEEEeC
Q 024372           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFS-ASGSADFTAKLWDA   90 (268)
Q Consensus        12 ~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l-~s~s~D~~v~iw~~   90 (268)
                      +.+|.++|++++|+|   ||++||+|+.|+ +++|+..+++.+.....  ..+..+++.+++..+ ++++.|++|++||.
T Consensus        15 ~~~h~~~V~~v~fs~---dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~   88 (355)
T 3vu4_A           15 ENHVSNPVTDYEFNQ---DQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGVKEVVHIWDD   88 (355)
T ss_dssp             ----CCCCCEEEECT---TSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSSTTEEEEEET
T ss_pred             cccCCCceEEEEECC---CCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECCccEEEEEEC
Confidence            468999999999985   999999998775 78999988876654432  347778888877766 57888999999999


Q ss_pred             CCCCeeeeeccCCeEEEEEECCCC-----------------------------------CEEEE--eeCCCeEEEEECCC
Q 024372           91 LTGDEKHSFEHKHIVRACAFSEDT-----------------------------------HLLLT--GGFEKILRIFDLNR  133 (268)
Q Consensus        91 ~~~~~~~~~~~~~~v~~v~~~~~~-----------------------------------~~l~s--~~~d~~i~~~d~~~  133 (268)
                      .+++.+..+.+...|.++.++++.                                   ..++.  |+.|+.|++||++.
T Consensus        89 ~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~  168 (355)
T 3vu4_A           89 VKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQS  168 (355)
T ss_dssp             TTTEEEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEECCC
T ss_pred             CCCcEEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEECCC
Confidence            999998888888888888887653                                   23333  57888899999875


Q ss_pred             CCC--------------C-CeEecCCcccEEEEEEeCCCCcEEEEeeCCCe-EEEEeCCCCceEEeec---CCCCEEEEE
Q 024372          134 PDA--------------P-PREVGNSSGSIRTVAWLHSDQTILSSCTDSGG-VRLWDARSGKIVQTLE---TKSPVTSAE  194 (268)
Q Consensus       134 ~~~--------------~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~-i~iwd~~~~~~~~~~~---~~~~v~~~~  194 (268)
                      +..              + ...+..|.+.|.+++|+|++ .++++++.|++ |+|||+++++++.++.   +...+.+++
T Consensus       169 ~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g-~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~  247 (355)
T 3vu4_A          169 SGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS-DMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMK  247 (355)
T ss_dssp             ------------------CCEEECCCSSCEEEEEECTTS-SEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEE
T ss_pred             CCccccccccccccccCcccEEEEccCCceEEEEECCCC-CEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEE
Confidence            430              1 45667789999999999866 46777788898 9999999999999987   567799999


Q ss_pred             ECCCCcEEEE-eCCCeEEEEeCCCceeee--------------------EEeCCC----CceeeEEcCCCCCEEEeccCC
Q 024372          195 VSRDGRYITT-ADGSSVKFWDANHFGLVK--------------------GYNMPC----NTESASLEPKLGNIFIAGGED  249 (268)
Q Consensus       195 ~s~~g~~l~~-~~~~~v~~wd~~~~~~~~--------------------~~~~~~----~~~~~~~~~~~~~~~~~gs~d  249 (268)
                      |+|+|++|++ +.|+.|++||++.....+                    .+..+.    ....+++.+ +++++++++.|
T Consensus       248 ~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-d~~~l~~~~~d  326 (355)
T 3vu4_A          248 WSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWIS-ESSLVVVWPHT  326 (355)
T ss_dssp             ECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESS-SSEEEEEETTT
T ss_pred             ECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeC-CCCEEEEEeCC
Confidence            9999998876 578999999996542111                    111111    113455665 68999999999


Q ss_pred             CeEEEEECCCCc
Q 024372          250 MWVHVFDFHTGE  261 (268)
Q Consensus       250 ~~i~~wd~~~g~  261 (268)
                      +.+++|++..++
T Consensus       327 g~~~~~~~~~~~  338 (355)
T 3vu4_A          327 RMIETFKVVFDD  338 (355)
T ss_dssp             TEEEEEEEEEET
T ss_pred             CeEEEEEEEcCC
Confidence            999999986544

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.6e-33  Score=261.68  Aligned_cols=250  Identities=15%  Similarity=0.110  Sum_probs=192.1

Q ss_pred             eeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeE--EEe----e-----CccCcEEEEEecCCCcEEEEee
Q 024372           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWI--GTF----E-----GHKGAVWSCCLDANALFSASGS   80 (268)
Q Consensus        12 ~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~--~~~----~-----~h~~~V~~~~~~~~~~~l~s~s   80 (268)
                      +.||...+.+++|+   |+|++||+|+.|++|++||..++++.  ..+    .     +|...|.+++|+|++++||+|+
T Consensus       431 l~G~~~~v~sv~~s---pdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs  507 (902)
T 2oaj_A          431 LKGGVRTKRQKLPA---EYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSI  507 (902)
T ss_dssp             CCCSBCCCCCCCCC---SEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEE
T ss_pred             ccCCcCCCCccccc---ccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEe
Confidence            45666677777776   49999999999999999999887532  111    2     8999999999999999999999


Q ss_pred             CCCcEEEEeCCCCC---------------------------------------------eeeeec-cCCeEEEEEECCCC
Q 024372           81 ADFTAKLWDALTGD---------------------------------------------EKHSFE-HKHIVRACAFSEDT  114 (268)
Q Consensus        81 ~D~~v~iw~~~~~~---------------------------------------------~~~~~~-~~~~v~~v~~~~~~  114 (268)
                      .|++|+||++.+++                                             +...+. |...|.+++|+|+|
T Consensus       508 ~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG  587 (902)
T 2oaj_A          508 ETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG  587 (902)
T ss_dssp             TTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS
T ss_pred             cCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc
Confidence            99999999987652                                             233343 88899999999999


Q ss_pred             CEEEEeeCCCeEEEEECCCCCCCC----eEec-CCcccEEEEEEe-----CCC--CcEEEEeeCCCeEEEEeC---CCCc
Q 024372          115 HLLLTGGFEKILRIFDLNRPDAPP----REVG-NSSGSIRTVAWL-----HSD--QTILSSCTDSGGVRLWDA---RSGK  179 (268)
Q Consensus       115 ~~l~s~~~d~~i~~~d~~~~~~~~----~~~~-~~~~~v~~~~~~-----~~~--~~~~~~~~~d~~i~iwd~---~~~~  179 (268)
                       +||+|+.|++|++||++.+....    +... .|.+.|++++|+     |++  +..+++++.|++|++||+   .+|+
T Consensus       588 -~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~  666 (902)
T 2oaj_A          588 -FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGK  666 (902)
T ss_dssp             -EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGC
T ss_pred             -EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCc
Confidence             99999999999999987543211    1222 677889999999     876  356778889999999999   7888


Q ss_pred             eEEeecC------CCCEEEEE-EC----------------------CCCcEEEEeCCCeEEEEeCCCceeeeEEeCCC-C
Q 024372          180 IVQTLET------KSPVTSAE-VS----------------------RDGRYITTADGSSVKFWDANHFGLVKGYNMPC-N  229 (268)
Q Consensus       180 ~~~~~~~------~~~v~~~~-~s----------------------~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~~~-~  229 (268)
                      ++.++..      ..++..++ |+                      +++.+|+++ +..||+|++.+.++.+....+. .
T Consensus       667 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~-~~~ir~~~~~~~k~~~k~~~~~~~  745 (902)
T 2oaj_A          667 FDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG-FDDIRLITLGKSKSTHKGFKYPLA  745 (902)
T ss_dssp             EEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC-SSEEEEECTTCCCEEEEECSSCEE
T ss_pred             EEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe-ccceEEEeCccccceeeEccccee
Confidence            7766643      34566666 54                      566666666 6699999999888776553222 2


Q ss_pred             ceee--EE------cCCCCCEEEeccCCCeEEEEECCCCcEEeec
Q 024372          230 TESA--SL------EPKLGNIFIAGGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       230 ~~~~--~~------~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~~  266 (268)
                      ..++  ..      ....+..|++++.|+.|++|++.+++++...
T Consensus       746 ~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~  790 (902)
T 2oaj_A          746 ATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQMSE  790 (902)
T ss_dssp             EEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             eeEEEEEEeccccccccCceEEEEEeCCCcEEEEECcchHHHhhc
Confidence            2222  11      2335789999999999999999999988764

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-31  Score=231.99  Aligned_cols=239  Identities=11%  Similarity=0.105  Sum_probs=193.4

Q ss_pred             eecCCCeeeEEEecCCCCCcEE-EEEeCCCCeEEeeCC--CCCeEEEee--CccCcEEEEEecCCCcEEEEeeCCCcEEE
Q 024372           13 HGHSRPVVDLFYSPITPDGFFL-VSASKDSSPMLRNGE--TGDWIGTFE--GHKGAVWSCCLDANALFSASGSADFTAKL   87 (268)
Q Consensus        13 ~~h~~~v~~~~f~~~~~dg~~l-~s~s~d~~i~iw~~~--~~~~~~~~~--~h~~~V~~~~~~~~~~~l~s~s~D~~v~i   87 (268)
                      .+|.+.|++++|+|   +|++| ++|+.|++|++|+..  +++.+..+.  .|...|.+++|+|++.+|++|+.|+.+++
T Consensus        99 ~~~~~~v~~~~~s~---d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~  175 (450)
T 2vdu_B           99 PPIYSYIRNLRLTS---DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYS  175 (450)
T ss_dssp             -CCCCCEEEEEECT---TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             CccCCceEEEEEcC---CCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEE
Confidence            46888999999985   88886 999999999999999  888888886  56789999999999999999999999999


Q ss_pred             EeCCCCCeee----e-eccCCeEEEEEECCC---CCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCc
Q 024372           88 WDALTGDEKH----S-FEHKHIVRACAFSED---THLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQT  159 (268)
Q Consensus        88 w~~~~~~~~~----~-~~~~~~v~~v~~~~~---~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  159 (268)
                      |++.++....    . ..|...|.+++|+|+   +++|++|+.|+.|++||++.+.........|.+.|.+++|+ ++ .
T Consensus       176 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~-~  253 (450)
T 2vdu_B          176 IDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KD-Y  253 (450)
T ss_dssp             EETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-ST-T
T ss_pred             EecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CC-C
Confidence            9998776543    3 348889999999999   99999999999999999987654333345688899999998 44 5


Q ss_pred             EEEEeeCCCeEEEEeCCCCceEEeecC--------------------------CCCEEEEEECCCCcEEEEe--CCCeEE
Q 024372          160 ILSSCTDSGGVRLWDARSGKIVQTLET--------------------------KSPVTSAEVSRDGRYITTA--DGSSVK  211 (268)
Q Consensus       160 ~~~~~~~d~~i~iwd~~~~~~~~~~~~--------------------------~~~v~~~~~s~~g~~l~~~--~~~~v~  211 (268)
                      ++++++.|+.|++||+++++++..+..                          ...+.+++++|++++++++  .++.|+
T Consensus       254 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~  333 (450)
T 2vdu_B          254 LLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCII  333 (450)
T ss_dssp             EEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEE
T ss_pred             EEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEE
Confidence            666777889999999999998877752                          2358899999999988754  579999


Q ss_pred             EEeC--CCc---eeeeEEeCCCCceeeEEcCCCCCEEEe-ccC------CCeEEEEECC
Q 024372          212 FWDA--NHF---GLVKGYNMPCNTESASLEPKLGNIFIA-GGE------DMWVHVFDFH  258 (268)
Q Consensus       212 ~wd~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-gs~------d~~i~~wd~~  258 (268)
                      +||+  ...   ..+..+..+..+..+++.+  +.++++ ++.      +..|.+|.+.
T Consensus       334 iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~--~~~~v~~~~~~~~~~~~~~i~v~~~~  390 (450)
T 2vdu_B          334 ILEMSEKQKGDLALKQIITFPYNVISLSAHN--DEFQVTLDNKESSGVQKNFAKFIEYN  390 (450)
T ss_dssp             EEEECSSSTTCEEEEEEEECSSCEEEEEEET--TEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred             EEEeccCCCCceeeccEeccCCceEEEEecC--CcEEEEEecccCCCCCCcceEEEEEE
Confidence            9999  444   6667777666677788877  345554 443      4557888754

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.4e-30  Score=225.88  Aligned_cols=239  Identities=15%  Similarity=0.228  Sum_probs=194.3

Q ss_pred             eeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEee--CccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCee
Q 024372           19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE--GHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEK   96 (268)
Q Consensus        19 v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~--~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~   96 (268)
                      .+.|+|++   + ++||+|. |++|+|||..+|+.+..+.  +|...|.+++|+|++.+|++|+.|++|++||+.+++.+
T Consensus       108 ~~~l~wS~---~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~  182 (420)
T 4gga_A          108 LNLVDWSS---G-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL  182 (420)
T ss_dssp             CBCEEECT---T-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             ceeEEECC---C-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEE
Confidence            45688873   3 4777765 9999999999999877664  67788999999999999999999999999999999887


Q ss_pred             eeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeC
Q 024372           97 HSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA  175 (268)
Q Consensus        97 ~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~  175 (268)
                      ..+. |...+.++++  ++..+++|+.|+.+++||.............|...+..+.+.+.+. ++++++.|+.+++||.
T Consensus       183 ~~~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~-~l~s~~~D~~v~i~~~  259 (420)
T 4gga_A          183 RNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR-HLASGGNDNLVNVWPS  259 (420)
T ss_dssp             EEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEES
T ss_pred             EEEeCCCCceEEEee--CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCC-eeeeeeccccceEEee
Confidence            7764 7778888776  4679999999999999998765555556667888999999988775 5566677899999999


Q ss_pred             CCCce----EEee-cCCCCEEEEEECCCCc-EEEE---eCCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEec
Q 024372          176 RSGKI----VQTL-ETKSPVTSAEVSRDGR-YITT---ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAG  246 (268)
Q Consensus       176 ~~~~~----~~~~-~~~~~v~~~~~s~~g~-~l~~---~~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  246 (268)
                      ++++.    +... .+...|.+++|+|++. ++++   +.|+.|++||++++.++..+..+.......+.+. ++.++++
T Consensus       260 ~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~-~~~lv~~  338 (420)
T 4gga_A          260 APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPH-YKELISG  338 (420)
T ss_dssp             SCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETT-TTEEEEE
T ss_pred             ccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCC-CCeEEEE
Confidence            88753    2333 3556799999999764 4443   2579999999999999988888878888888875 5555543


Q ss_pred             --cCCCeEEEEECCCCcEEeec
Q 024372          247 --GEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       247 --s~d~~i~~wd~~~g~~~~~~  266 (268)
                        +.|+.|++||+.+++++..+
T Consensus       339 sg~~d~~I~iwd~~~~~~v~~l  360 (420)
T 4gga_A          339 HGFAQNQLVIWKYPTMAKVAEL  360 (420)
T ss_dssp             ECTTTCCEEEEETTTCCEEEEE
T ss_pred             EecCCCEEEEEECCCCcEEEEE
Confidence              47999999999999998765

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=3.4e-31  Score=257.06  Aligned_cols=207  Identities=24%  Similarity=0.386  Sum_probs=173.6

Q ss_pred             eeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecC--CCcEEEEeeCCC
Q 024372            6 VAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDA--NALFSASGSADF   83 (268)
Q Consensus         6 ~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~--~~~~l~s~s~D~   83 (268)
                      ......+.+|.+.|.+++|+|   +|++|++|+.|++|++||..+++.+.++.+|...|.+++|+|  ++.++++|+.|+
T Consensus       647 ~~~~~~~~~h~~~v~~~~~s~---~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~  723 (1249)
T 3sfz_A          647 GEKLLDIKAHEDEVLCCAFSS---DDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDF  723 (1249)
T ss_dssp             CCEEEEECCCSSCEEEEEECT---TSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTS
T ss_pred             CCEEEEeccCCCCEEEEEEec---CCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCC
Confidence            344556679999999999985   899999999999999999999999999999999999999999  556899999999


Q ss_pred             cEEEEeCCCCCeeeee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCC------------------------
Q 024372           84 TAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP------------------------  138 (268)
Q Consensus        84 ~v~iw~~~~~~~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~------------------------  138 (268)
                      .|++||+.++.+...+ .|...|.+++|+|+++.+++++.|+.|++||+..+....                        
T Consensus       724 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  803 (1249)
T 3sfz_A          724 FLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKC  803 (1249)
T ss_dssp             CEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCC
T ss_pred             eEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEE
Confidence            9999999999887766 488899999999999999999999999999986432100                        


Q ss_pred             ------------------------------eEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCC-
Q 024372          139 ------------------------------REVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-  187 (268)
Q Consensus       139 ------------------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-  187 (268)
                                                    .....|.+.+.+++|+|++. ++++++.++.|++||+++++.+..+..+ 
T Consensus       804 ~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~h~  882 (1249)
T 3sfz_A          804 CSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDH-LAVIALSQYCVELWNIDSRLKVADCRGHL  882 (1249)
T ss_dssp             CCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTT-EEEEECSSSCEEEEETTTTEEEEEECCCS
T ss_pred             EEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCceeeecCCCc
Confidence                                          00114566788899988766 4556667799999999999998888654 


Q ss_pred             CCEEEEEECCCCcEEEE-eCCCeEEEEeCC
Q 024372          188 SPVTSAEVSRDGRYITT-ADGSSVKFWDAN  216 (268)
Q Consensus       188 ~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~  216 (268)
                      ..+.+++|+|+|+++++ +.|+.|++||+.
T Consensus       883 ~~v~~v~~spdg~~l~s~s~dg~v~vw~~~  912 (1249)
T 3sfz_A          883 SWVHGVMFSPDGSSFLTASDDQTIRVWETK  912 (1249)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEEHH
T ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEEcc
Confidence            56999999999987765 568899999853

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.9e-31  Score=224.46  Aligned_cols=212  Identities=18%  Similarity=0.271  Sum_probs=166.2

Q ss_pred             eecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC---eEEEeeCccCcEEEEEecCCCcEEEEeeCCC
Q 024372            7 AVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD---WIGTFEGHKGAVWSCCLDANALFSASGSADF   83 (268)
Q Consensus         7 ~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~---~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~   83 (268)
                      .....+.+|..+|.+++|+|   +|++|++|+.|++|++||+.+++   ++..+.+|...|.+++|+|++.+|++++.|+
T Consensus        96 ~~~~~~~~h~~~v~~v~~sp---~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~  172 (345)
T 3fm0_A           96 ECVTTLEGHENEVKSVAWAP---SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDD  172 (345)
T ss_dssp             EEEEEECCCSSCEEEEEECT---TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTS
T ss_pred             EEEEEccCCCCCceEEEEeC---CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCC
Confidence            34556779999999999985   89999999999999999998763   5677889999999999999999999999999


Q ss_pred             cEEEEeCCCCCee--eee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCC---------------eEecCCc
Q 024372           84 TAKLWDALTGDEK--HSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP---------------REVGNSS  145 (268)
Q Consensus        84 ~v~iw~~~~~~~~--~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~---------------~~~~~~~  145 (268)
                      +|++||..++...  ..+ .|...|.+++|+|++++|++|+.|++|++||...+....               .....|.
T Consensus       173 ~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  252 (345)
T 3fm0_A          173 TVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHS  252 (345)
T ss_dssp             CEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCS
T ss_pred             cEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCC
Confidence            9999999876532  333 488899999999999999999999999999964322110               1112367


Q ss_pred             ccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCce---------EEeec-CCCCEEEEEECCCC-cEEEE-eCCCeEEEE
Q 024372          146 GSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI---------VQTLE-TKSPVTSAEVSRDG-RYITT-ADGSSVKFW  213 (268)
Q Consensus       146 ~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~---------~~~~~-~~~~v~~~~~s~~g-~~l~~-~~~~~v~~w  213 (268)
                      ..|.+++|++.+..++ +++.|+.|++||.+.+..         .+.+. +...|.+++|+|++ .+|++ +.|+.|++|
T Consensus       253 ~~v~~v~~~~~~~~l~-s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W  331 (345)
T 3fm0_A          253 RTIYDIAWCQLTGALA-TACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFW  331 (345)
T ss_dssp             SCEEEEEECTTTCCEE-EEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEE
T ss_pred             CcEEEEEEecCCCEEE-EEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEE
Confidence            7899999999887655 555679999999876431         12222 44679999999997 46654 679999999


Q ss_pred             eCCCceeee
Q 024372          214 DANHFGLVK  222 (268)
Q Consensus       214 d~~~~~~~~  222 (268)
                      +++..+...
T Consensus       332 ~~~~~~~~~  340 (345)
T 3fm0_A          332 KYQRPEGLH  340 (345)
T ss_dssp             EECC-----
T ss_pred             EecCCCCcc
Confidence            998765443

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=2.7e-32  Score=228.15  Aligned_cols=206  Identities=20%  Similarity=0.322  Sum_probs=165.6

Q ss_pred             EEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC--eEEEeeCccCcEEEEEecCC--CcEEEEeeCCCcE
Q 024372           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDAN--ALFSASGSADFTA   85 (268)
Q Consensus        10 ~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~--~~~~~~~h~~~V~~~~~~~~--~~~l~s~s~D~~v   85 (268)
                      ..+.+|.++|.+++|+|. .+|++|++|+.|++|++||..+++  .+..+.+|.+.|.+++|+|+  +.++++|+.|++|
T Consensus        51 ~~l~gH~~~V~~v~~~~~-~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i  129 (316)
T 3bg1_A           51 ADLRGHEGPVWQVAWAHP-MYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAI  129 (316)
T ss_dssp             EEEECCSSCEEEEEECCG-GGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCE
T ss_pred             EEEcCCCccEEEEEeCCC-CCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCE
Confidence            456799999999999751 257899999999999999999874  67788999999999999998  7899999999999


Q ss_pred             EEEeCCCCCee---ee-eccCCeEEEEEECCC-----------------CCEEEEeeCCCeEEEEECCCCCC--CCeEec
Q 024372           86 KLWDALTGDEK---HS-FEHKHIVRACAFSED-----------------THLLLTGGFEKILRIFDLNRPDA--PPREVG  142 (268)
Q Consensus        86 ~iw~~~~~~~~---~~-~~~~~~v~~v~~~~~-----------------~~~l~s~~~d~~i~~~d~~~~~~--~~~~~~  142 (268)
                      ++||+......   .. ..|...|.+++|+|+                 ++.|++|+.|+.|++||++....  ....+.
T Consensus       130 ~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~  209 (316)
T 3bg1_A          130 SLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLE  209 (316)
T ss_dssp             EEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCB
T ss_pred             EEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecc
Confidence            99999765321   22 237778999999997                 47899999999999999864321  223445


Q ss_pred             CCcccEEEEEEeCCC---CcEEEEeeCCCeEEEEeCCCC---c-eEEee-cCCCCEEEEEECCCCcEEEE-eCCCeEEEE
Q 024372          143 NSSGSIRTVAWLHSD---QTILSSCTDSGGVRLWDARSG---K-IVQTL-ETKSPVTSAEVSRDGRYITT-ADGSSVKFW  213 (268)
Q Consensus       143 ~~~~~v~~~~~~~~~---~~~~~~~~~d~~i~iwd~~~~---~-~~~~~-~~~~~v~~~~~s~~g~~l~~-~~~~~v~~w  213 (268)
                      .|.+.|.+++|+|++   ..++++++.|++|+|||+++.   + ....+ .+...+.+++|+|++++|++ +.|+.|++|
T Consensus       210 ~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw  289 (316)
T 3bg1_A          210 AHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLW  289 (316)
T ss_dssp             CCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEE
T ss_pred             cCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEE
Confidence            688899999999875   357888889999999999763   1 11122 24567999999999988765 578999999


Q ss_pred             eCC
Q 024372          214 DAN  216 (268)
Q Consensus       214 d~~  216 (268)
                      +..
T Consensus       290 ~~~  292 (316)
T 3bg1_A          290 KES  292 (316)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            975

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9e-32  Score=236.49  Aligned_cols=232  Identities=11%  Similarity=0.105  Sum_probs=176.8

Q ss_pred             cCCCeeeEEEecCCCCCcEEEEEeCCCCeE-----------------E----------eeCCCCCeEEEee-CccCcEEE
Q 024372           15 HSRPVVDLFYSPITPDGFFLVSASKDSSPM-----------------L----------RNGETGDWIGTFE-GHKGAVWS   66 (268)
Q Consensus        15 h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~-----------------i----------w~~~~~~~~~~~~-~h~~~V~~   66 (268)
                      -...|.+++|+|   ||+++|+|+.|++|+                 +          |++.+++....+. +|.+.|.+
T Consensus        14 ~~~~v~sv~~Sp---DG~~iASas~D~TV~d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~   90 (588)
T 2j04_A           14 FEDWKNNLTWAR---DGTLYLTTFPDISIGQPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRV   90 (588)
T ss_dssp             CSSSSCCEEECT---TSCEEEECSSSEEEEEECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEE
T ss_pred             hhccEEEEEECC---CCCEEEEEcCCceeecccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEE
Confidence            356889999985   999999999999983                 1          2222222222233 56788999


Q ss_pred             EEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeeccCC-----eEEEEEECCCCCEEEEeeCCCeEEEEECCCCCC-----
Q 024372           67 CCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKH-----IVRACAFSEDTHLLLTGGFEKILRIFDLNRPDA-----  136 (268)
Q Consensus        67 ~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~-----~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~-----  136 (268)
                      |+|+|+|+++|+++.||+|++||...  +...+.|..     .+.+++|||+|++|++|+.||+|++||+..+..     
T Consensus        91 vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~  168 (588)
T 2j04_A           91 CKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEF  168 (588)
T ss_dssp             EEECSSSSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCC
T ss_pred             EEECCCCCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccc
Confidence            99999999999999999999999644  444445443     499999999999999999999999999976532     


Q ss_pred             -CCeEe----cCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCce---EEeec-C-CCCEEEEEECCCCcEEEEeC
Q 024372          137 -PPREV----GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI---VQTLE-T-KSPVTSAEVSRDGRYITTAD  206 (268)
Q Consensus       137 -~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~---~~~~~-~-~~~v~~~~~s~~g~~l~~~~  206 (268)
                       ....+    ..|.+.|.+++|+|++  ++ +++.|++|++||+..++.   .+++. . ...|.+++|+  |..++++.
T Consensus       169 i~l~ti~~~~~gh~~~V~sVawSPdg--La-ass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~  243 (588)
T 2j04_A          169 YFESSIRLSDAGSKDWVTHIVWYEDV--LV-AALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC  243 (588)
T ss_dssp             EEEEEEECSCTTCCCCEEEEEEETTE--EE-EEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC
T ss_pred             eeeeeeecccccccccEEEEEEcCCc--EE-EEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe
Confidence             12333    4567899999999977  44 556679999999988773   35563 3 3579999999  57777766


Q ss_pred             CCeEEEEeCCCcee-eeEEeCCCCceeeEE--cCCCCCEEEeccCCCeEEEEECC
Q 024372          207 GSSVKFWDANHFGL-VKGYNMPCNTESASL--EPKLGNIFIAGGEDMWVHVFDFH  258 (268)
Q Consensus       207 ~~~v~~wd~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~gs~d~~i~~wd~~  258 (268)
                      +++|++||+..... ...+.+......+.+  ++ ++..++++++||. ++|...
T Consensus       244 ~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~-d~~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          244 PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEK-ESTILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCS-SCEEEEECSSCEE-EEEESS
T ss_pred             CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCC-CCCEEEEEcCCCC-EEEeec
Confidence            79999999988766 333343444566677  55 6889999999999 999874

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=8.1e-32  Score=231.85  Aligned_cols=227  Identities=15%  Similarity=0.137  Sum_probs=163.6

Q ss_pred             CCCcEEEEEeCCCCeEEeeCCCCCeE-----EEeeCccCcEEEEEecC--------CCcEEEEeeCCCcEEEEeCCCCCe
Q 024372           29 PDGFFLVSASKDSSPMLRNGETGDWI-----GTFEGHKGAVWSCCLDA--------NALFSASGSADFTAKLWDALTGDE   95 (268)
Q Consensus        29 ~dg~~l~s~s~d~~i~iw~~~~~~~~-----~~~~~h~~~V~~~~~~~--------~~~~l~s~s~D~~v~iw~~~~~~~   95 (268)
                      +++.+||+|+.|++|++||..+++..     ..+.||++.|.+++|+|        ++.+|||||.|++|||||+.++.+
T Consensus        99 ~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~  178 (393)
T 4gq1_A           99 VYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGP  178 (393)
T ss_dssp             EEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEE
T ss_pred             CCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCce
Confidence            46789999999999999999988643     45689999999999987        788999999999999999977665


Q ss_pred             -eeeeccCCeEEEEEECCCC-CEEEEeeCCCeEEEEECCCCCCCCeE------------------------ecCCcccEE
Q 024372           96 -KHSFEHKHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAPPRE------------------------VGNSSGSIR  149 (268)
Q Consensus        96 -~~~~~~~~~v~~v~~~~~~-~~l~s~~~d~~i~~~d~~~~~~~~~~------------------------~~~~~~~v~  149 (268)
                       ...+.|..++.+++|+|++ .+|++|+.|++|++||++++......                        ...|...+.
T Consensus       179 ~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~  258 (393)
T 4gq1_A          179 ILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLA  258 (393)
T ss_dssp             EEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCS
T ss_pred             eeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccce
Confidence             4455788999999999987 48999999999999998765422111                        123456778


Q ss_pred             EEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCC-CCEE------------------EEEECC--CCcEEEEe-CC
Q 024372          150 TVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVT------------------SAEVSR--DGRYITTA-DG  207 (268)
Q Consensus       150 ~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~v~------------------~~~~s~--~g~~l~~~-~~  207 (268)
                      ++.|.+.++..+++++.|+++++||+++++....+..+ ..+.                  ...++|  ++.+++++ .|
T Consensus       259 ~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~D  338 (393)
T 4gq1_A          259 NVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQH  338 (393)
T ss_dssp             EEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTT
T ss_pred             eeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCC
Confidence            88988666667778888899999999887765544321 1111                  223333  34455655 58


Q ss_pred             CeEEEEeCCCceeeeEEe-CCCCceeeEEcCCCCCEEEeccCCCeEEEEEC
Q 024372          208 SSVKFWDANHFGLVKGYN-MPCNTESASLEPKLGNIFIAGGEDMWVHVFDF  257 (268)
Q Consensus       208 ~~v~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~  257 (268)
                      +.|++||+.....+.... ....+.+++|+| +|++|++|+.|+ +.+|++
T Consensus       339 g~V~lwd~~~~~~~~~~~~~~~~V~svafsp-dG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          339 GLIQLINTYEKDSNSIPIQLGMPIVDFCWHQ-DGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             TEEEEEETTCTTCCEEEEECSSCEEEEEECT-TSSEEEEEESSE-EEEEEE
T ss_pred             CEEEEEECCCCcEEEEecCCCCcEEEEEEcC-CCCEEEEEeCCC-eEEEEE
Confidence            999999998876665543 444567788887 799999998877 556654

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=7.5e-30  Score=211.86  Aligned_cols=239  Identities=15%  Similarity=0.199  Sum_probs=189.3

Q ss_pred             eeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEee--CccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCee
Q 024372           19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE--GHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEK   96 (268)
Q Consensus        19 v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~--~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~   96 (268)
                      .+.|+|+|   ++ +||+| .|++|+|||..+|+++..+.  +|...|.+++|+|++.++++|+.|++|++|++.+++..
T Consensus        28 ~~~l~WS~---~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~  102 (318)
T 4ggc_A           28 LNLVDWSS---GN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL  102 (318)
T ss_dssp             CBCEEECT---TS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             ceEEEECC---CC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeE
Confidence            46799984   54 67765 59999999999999888775  67788999999999999999999999999999999887


Q ss_pred             eeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeC
Q 024372           97 HSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA  175 (268)
Q Consensus        97 ~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~  175 (268)
                      ..+. |...+.++  ++++..+++++.++.+++|+.............|...+..+.+.+.+. ++++++.|+.|++||+
T Consensus       103 ~~~~~h~~~~~~~--~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~  179 (318)
T 4ggc_A          103 RNMTSHSARVGSL--SWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR-HLASGGNDNLVNVWPS  179 (318)
T ss_dssp             EEEECCSSCEEEE--EEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEES
T ss_pred             EEecCccceEEEe--ecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCC-EEEEEecCcceeEEEC
Confidence            7764 66666654  455779999999999999998765555556667888899999887765 5566778899999999


Q ss_pred             CCCceE----E-eecCCCCEEEEEECCCCcE-EE--Ee-CCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEe-
Q 024372          176 RSGKIV----Q-TLETKSPVTSAEVSRDGRY-IT--TA-DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIA-  245 (268)
Q Consensus       176 ~~~~~~----~-~~~~~~~v~~~~~s~~g~~-l~--~~-~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  245 (268)
                      ++++..    . ...+...+.++.++|++.. +.  ++ .++.|++||.+..................+.+. +..+++ 
T Consensus       180 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~  258 (318)
T 4ggc_A          180 APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPH-YKELISG  258 (318)
T ss_dssp             SCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETT-TTEEEEE
T ss_pred             CCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeeccc-ccceEEE
Confidence            987642    2 2234567999999998643 32  22 468999999998887777777767777777775 555544 


Q ss_pred             -ccCCCeEEEEECCCCcEEeec
Q 024372          246 -GGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       246 -gs~d~~i~~wd~~~g~~~~~~  266 (268)
                       |+.|+.|++||+.+++++..+
T Consensus       259 sg~~d~~i~iwd~~~~~~~~~l  280 (318)
T 4ggc_A          259 HGFAQNQLVIWKYPTMAKVAEL  280 (318)
T ss_dssp             ECTTTCCEEEEETTTCCEEEEE
T ss_pred             EEcCCCEEEEEECCCCcEEEEE
Confidence             457999999999999998765

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=4.4e-30  Score=222.65  Aligned_cols=240  Identities=13%  Similarity=0.090  Sum_probs=204.6

Q ss_pred             eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEE-EEeeCCCcEEEEeCC
Q 024372           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFS-ASGSADFTAKLWDAL   91 (268)
Q Consensus        13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l-~s~s~D~~v~iw~~~   91 (268)
                      .+|.+.|.+++|+|   +|.++++++.|+.+++||..+++.+.++..|...+..++|+|++.++ ++++.|+.|++||+.
T Consensus       166 ~~~~~~v~~~~~~~---~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~  242 (433)
T 3bws_A          166 KKKLGFVETISIPE---HNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRK  242 (433)
T ss_dssp             HTTCCEEEEEEEGG---GTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             cccCCceeEEEEcC---CCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECC
Confidence            47899999999974   89999999999999999999999999999999999999999999877 566689999999999


Q ss_pred             CCCeeeeeccCCeEEEEEECCCCCEEEEee--------CCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEE
Q 024372           92 TGDEKHSFEHKHIVRACAFSEDTHLLLTGG--------FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS  163 (268)
Q Consensus        92 ~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~--------~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  163 (268)
                      ++.....+.....+..++|+|+++.+++++        .|+.|++||+.+++. .... .+.+.+..++|+|++..++++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~-~~~~-~~~~~~~~~~~~~~g~~l~~~  320 (433)
T 3bws_A          243 TKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKL-IDTI-GPPGNKRHIVSGNTENKIYVS  320 (433)
T ss_dssp             TTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEE-EEEE-EEEECEEEEEECSSTTEEEEE
T ss_pred             CCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcE-Eeec-cCCCCcceEEECCCCCEEEEE
Confidence            998888887777899999999999999888        488999999976532 2222 334578889999988888888


Q ss_pred             eeCCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEe-C---------------CCeEEEEeCCCceeeeEEeCC
Q 024372          164 CTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-D---------------GSSVKFWDANHFGLVKGYNMP  227 (268)
Q Consensus       164 ~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~---------------~~~v~~wd~~~~~~~~~~~~~  227 (268)
                      ++.++.|++||+++++.+..+.....+.+++++|+|++++++ .               |+.|++||+.+.+.+..+...
T Consensus       321 ~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~  400 (433)
T 3bws_A          321 DMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG  400 (433)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS
T ss_pred             ecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC
Confidence            888899999999999999888877789999999999876544 3               359999999999888888776


Q ss_pred             CCceeeEEcCCCCCEEEecc-CCCeEEEEECC
Q 024372          228 CNTESASLEPKLGNIFIAGG-EDMWVHVFDFH  258 (268)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~gs-~d~~i~~wd~~  258 (268)
                      ..+..+.++| +++++++++ .|+.|++|++.
T Consensus       401 ~~~~~~~~s~-dg~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          401 NQPTGLDVSP-DNRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             SSEEEEEECT-TSCEEEEEETTTTEEEEEEET
T ss_pred             CCCceEEEcC-CCCEEEEEECCCCeEEEEEec
Confidence            6667778877 588877765 59999999975

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=4.5e-31  Score=225.10  Aligned_cols=197  Identities=12%  Similarity=0.174  Sum_probs=160.0

Q ss_pred             ecCCCeeeEEEecCCCCCcEEEEEe--CCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCC
Q 024372           14 GHSRPVVDLFYSPITPDGFFLVSAS--KDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL   91 (268)
Q Consensus        14 ~h~~~v~~~~f~~~~~dg~~l~s~s--~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~   91 (268)
                      .++..+.+++|+|   ||++||+|+  .|++|+|||..+++.+.++. |.+.|.+++|+|++.++++++.| .+++|+..
T Consensus       131 ~~~~~~~~v~fSp---Dg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~  205 (365)
T 4h5i_A          131 NADDYTKLVYISR---EGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTV  205 (365)
T ss_dssp             CTTCCEEEEEECT---TSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETT
T ss_pred             CcccCEEEEEEcC---CCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEec
Confidence            4556688999985   999987554  78999999999999998886 77889999999999999999855 56666666


Q ss_pred             CCCeeee---eccCCeEEEEEECCCCCEEEEeeCCC----eEEEEECCCCCCC---CeEecCCcccEEEEEEeCCCCcEE
Q 024372           92 TGDEKHS---FEHKHIVRACAFSEDTHLLLTGGFEK----ILRIFDLNRPDAP---PREVGNSSGSIRTVAWLHSDQTIL  161 (268)
Q Consensus        92 ~~~~~~~---~~~~~~v~~v~~~~~~~~l~s~~~d~----~i~~~d~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~  161 (268)
                      ++.....   ..|...|.+++|+|+++.+++++.|+    .++.|++......   ......|...|++++|+|++. ++
T Consensus       206 ~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~-~l  284 (365)
T 4h5i_A          206 TGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGE-LA  284 (365)
T ss_dssp             TCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSC-EE
T ss_pred             cCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCC-ce
Confidence            6665433   23677899999999999999999887    6888887543221   123456778899999999775 56


Q ss_pred             EEeeCCCeEEEEeCCCCceEEee-c-CCCCEEEEEECCCCcEEEE-eCCCeEEEEeCC
Q 024372          162 SSCTDSGGVRLWDARSGKIVQTL-E-TKSPVTSAEVSRDGRYITT-ADGSSVKFWDAN  216 (268)
Q Consensus       162 ~~~~~d~~i~iwd~~~~~~~~~~-~-~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~  216 (268)
                      ++++.|++|+|||++++++++++ . |..+|.+++|+|||++|++ +.|++||+||+.
T Consensus       285 asgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip  342 (365)
T 4h5i_A          285 VLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLP  342 (365)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECC
T ss_pred             EEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence            67788899999999999999876 4 4567999999999999876 579999999984

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.98  E-value=3.3e-29  Score=214.38  Aligned_cols=232  Identities=12%  Similarity=0.103  Sum_probs=194.3

Q ss_pred             CcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEE-EEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEE
Q 024372           31 GFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFS-ASGSADFTAKLWDALTGDEKHSFEHKHIVRACA  109 (268)
Q Consensus        31 g~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l-~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~  109 (268)
                      +.++++++.|++|++||..+++++..+.+|.. +.+++|+|++.++ ++++.|++|++||+.+++....+.+...+.+++
T Consensus         2 ~~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~   80 (391)
T 1l0q_A            2 TFAYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVA   80 (391)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEE
T ss_pred             CEEEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceE
Confidence            35788999999999999999999999988754 8999999999876 788899999999999999988888777999999


Q ss_pred             ECCCCCEEE-EeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCC
Q 024372          110 FSEDTHLLL-TGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS  188 (268)
Q Consensus       110 ~~~~~~~l~-s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~  188 (268)
                      |+|+++.++ +++.++.|++||+.+++. ...... ...+.+++|+|++..++++++.++.|++||+++++.+..+..+.
T Consensus        81 ~spdg~~l~~~~~~~~~v~v~d~~~~~~-~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~  158 (391)
T 1l0q_A           81 VSPDGKQVYVTNMASSTLSVIDTTSNTV-AGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR  158 (391)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS
T ss_pred             ECCCCCEEEEEECCCCEEEEEECCCCeE-EEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCC
Confidence            999999775 555779999999976543 223333 34678999999888787788888999999999999999888777


Q ss_pred             CEEEEEECCCCcEE-EEe-CCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEecc---CCCeEEEEECCCCcEE
Q 024372          189 PVTSAEVSRDGRYI-TTA-DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGG---EDMWVHVFDFHTGEQI  263 (268)
Q Consensus       189 ~v~~~~~s~~g~~l-~~~-~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs---~d~~i~~wd~~~g~~~  263 (268)
                      .+..++|+|+++++ +++ .++.|++||+++.+.+..+........+.+.+ +++++++++   .|+.|++||+.+++.+
T Consensus       159 ~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~~~~~~~v~~~d~~~~~~~  237 (391)
T 1l0q_A          159 SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNP-EGTKAYVTNVDKYFNTVSMIDTGTNKIT  237 (391)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECT-TSSEEEEEEECSSCCEEEEEETTTTEEE
T ss_pred             CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECC-CCCEEEEEecCcCCCcEEEEECCCCeEE
Confidence            88999999999876 444 57899999999988888777766666777777 588777776   6899999999998876


Q ss_pred             eec
Q 024372          264 AIT  266 (268)
Q Consensus       264 ~~~  266 (268)
                      ...
T Consensus       238 ~~~  240 (391)
T 1l0q_A          238 ARI  240 (391)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            653

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.98  E-value=5.6e-30  Score=216.22  Aligned_cols=230  Identities=11%  Similarity=0.028  Sum_probs=173.3

Q ss_pred             CCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCC---------CCCeEEEee-CccCcEEEEEecC--CCcEEEEeeCCCc
Q 024372           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGE---------TGDWIGTFE-GHKGAVWSCCLDA--NALFSASGSADFT   84 (268)
Q Consensus        17 ~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~---------~~~~~~~~~-~h~~~V~~~~~~~--~~~~l~s~s~D~~   84 (268)
                      ..|.++.|+|   +   +++++.|+++++|+..         +++.+..+. +|.++|.+++|+|  ++.++++++.|++
T Consensus        77 ~~v~~~~~~~---~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~  150 (343)
T 3lrv_A           77 PNPRTGGEHP---A---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGT  150 (343)
T ss_dssp             ECCCTTCCCC---S---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCC
T ss_pred             CCceeeeeCC---c---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCc
Confidence            5677777775   3   8999999999999655         566555554 7888999999999  9999999999999


Q ss_pred             EEEEeCCCCCeeeee--ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecC-CcccEEEEEEeCCCCcEE
Q 024372           85 AKLWDALTGDEKHSF--EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN-SSGSIRTVAWLHSDQTIL  161 (268)
Q Consensus        85 v~iw~~~~~~~~~~~--~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~  161 (268)
                      |++||+.++......  .+...+.+++|+|++++|++|+.|+.|++||++++......+.. |.++|.+++|+|++.. +
T Consensus       151 i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~-l  229 (343)
T 3lrv_A          151 IGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYW-M  229 (343)
T ss_dssp             EEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSE-E
T ss_pred             EEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCE-E
Confidence            999999998886655  34557999999999999999999999999999887655345555 8899999999987765 4


Q ss_pred             EEeeCCCeEEEEeCCCCceEEeecC---C-CCE--EEEEECCCCcEEEE-eC-CCeEEEEeCCCceeeeEEeCCCCceee
Q 024372          162 SSCTDSGGVRLWDARSGKIVQTLET---K-SPV--TSAEVSRDGRYITT-AD-GSSVKFWDANHFGLVKGYNMPCNTESA  233 (268)
Q Consensus       162 ~~~~~d~~i~iwd~~~~~~~~~~~~---~-~~v--~~~~~s~~g~~l~~-~~-~~~v~~wd~~~~~~~~~~~~~~~~~~~  233 (268)
                      +++++ +.|++||++++++++.+..   + .++  .+++|+|+|+++++ +. ++.|++|++.........   ......
T Consensus       230 ~s~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~---~~~~~~  305 (343)
T 3lrv_A          230 VVECD-QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK---DEESAL  305 (343)
T ss_dssp             EEEES-SBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE---EEEEEC
T ss_pred             EEEeC-CeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe---cCceeE
Confidence            45555 5999999999887665542   1 223  36999999999887 34 889999998654322111   111222


Q ss_pred             EEcC--CCCCEEEeccCCCeEEEEEC
Q 024372          234 SLEP--KLGNIFIAGGEDMWVHVFDF  257 (268)
Q Consensus       234 ~~~~--~~~~~~~~gs~d~~i~~wd~  257 (268)
                      .+.+  .+...+++++.|+.++++-.
T Consensus       306 ~~~~~~~~~~~l~~~~~d~~~~~~~~  331 (343)
T 3lrv_A          306 CLQSDTADFTDMDVVCGDGGIAAILK  331 (343)
T ss_dssp             CC----CCCCEEEEEEETTEEEEEEE
T ss_pred             ecCccccccceeEEEecCCceEEEEe
Confidence            3322  25778999999999888853

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.97  E-value=1.7e-29  Score=216.31  Aligned_cols=240  Identities=15%  Similarity=0.257  Sum_probs=166.4

Q ss_pred             ecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCC---CcEEEEeeCCCcEEEEeC
Q 024372           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN---ALFSASGSADFTAKLWDA   90 (268)
Q Consensus        14 ~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~---~~~l~s~s~D~~v~iw~~   90 (268)
                      +|..+|.+++|+|  .++++|++++.|+.+++||..+++.+..+. |...+..+++.+.   +.++++++.|+.|++||+
T Consensus        97 ~~~~~v~~~~~~~--~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~  173 (408)
T 4a11_B           97 VHRYSVETVQWYP--HDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDL  173 (408)
T ss_dssp             CCSSCEEEEEECT--TCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEES
T ss_pred             cCCCcEEEEEEcc--CCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeC
Confidence            5999999999986  367899999999999999999999888877 7788999999874   449999999999999999


Q ss_pred             CCCCeeeeec-cCCeEEEEEECCCCC-EEEEeeCCCeEEEEECCCCCCCCeEe---------------cCCcccEEEEEE
Q 024372           91 LTGDEKHSFE-HKHIVRACAFSEDTH-LLLTGGFEKILRIFDLNRPDAPPREV---------------GNSSGSIRTVAW  153 (268)
Q Consensus        91 ~~~~~~~~~~-~~~~v~~v~~~~~~~-~l~s~~~d~~i~~~d~~~~~~~~~~~---------------~~~~~~v~~~~~  153 (268)
                      .++.....+. |...|.+++|+|+++ ++++|+.|+.|++||++.........               ..|.+.+.+++|
T Consensus       174 ~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  253 (408)
T 4a11_B          174 KSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCF  253 (408)
T ss_dssp             SSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEE
T ss_pred             CCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEE
Confidence            9888777775 888999999999988 69999999999999997654333322               457788999999


Q ss_pred             eCCCCcEEEEeeCCCeEEEEeCCCCc-----------------------------------------------eEEeec-
Q 024372          154 LHSDQTILSSCTDSGGVRLWDARSGK-----------------------------------------------IVQTLE-  185 (268)
Q Consensus       154 ~~~~~~~~~~~~~d~~i~iwd~~~~~-----------------------------------------------~~~~~~-  185 (268)
                      +|++.. +++++.|+.|++||+++++                                               .+..+. 
T Consensus       254 ~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~  332 (408)
T 4a11_B          254 TSDGLH-LLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKG  332 (408)
T ss_dssp             CTTSSE-EEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECC
T ss_pred             cCCCCE-EEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeecc
Confidence            987654 5566677999999987653                                               334444 


Q ss_pred             CCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEECCC
Q 024372          186 TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHT  259 (268)
Q Consensus       186 ~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~  259 (268)
                      +...+.+++|+|++++|++ +.|+.|++||++..+.+........  ...+.+.....+.+++.|+.+++|+...
T Consensus       333 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~W~~~~  405 (408)
T 4a11_B          333 HYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTT--KSQLNPAFEDAWSSSDEEGGTSAWSHPQ  405 (408)
T ss_dssp             CSSCEEEEEEETTTTEEEEEETTSCEEEEEECC------------------------------------------
T ss_pred             CCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEe--ccccccccceeecccCccCceeecCCcc
Confidence            3457999999999998876 4689999999998877655443222  2233443456677788899999998653

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.3e-29  Score=214.97  Aligned_cols=210  Identities=19%  Similarity=0.252  Sum_probs=173.0

Q ss_pred             eecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC--eEEEeeCccCcEEEEEecCC--CcEEEEeeCC
Q 024372            7 AVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDAN--ALFSASGSAD   82 (268)
Q Consensus         7 ~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~--~~~~~~~h~~~V~~~~~~~~--~~~l~s~s~D   82 (268)
                      .....+.+|..+|++++|+|. .++++|++|+.|++|++||..+++  .+..+.+|...|.+++|+|+  +.++++++.|
T Consensus        46 ~~~~~~~~h~~~v~~~~~~~~-~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d  124 (379)
T 3jrp_A           46 KLIDTLTGHEGPVWRVDWAHP-KFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD  124 (379)
T ss_dssp             EEEEEECCCSSCEEEEEECCG-GGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             eeeeEecCCCCcEEEEEeCCC-CCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCC
Confidence            344456789999999999852 238899999999999999999987  77888899999999999999  8999999999


Q ss_pred             CcEEEEeCCCCCee---eeeccCCeEEEEEECC-------------CCCEEEEeeCCCeEEEEECCCCCCC---CeEecC
Q 024372           83 FTAKLWDALTGDEK---HSFEHKHIVRACAFSE-------------DTHLLLTGGFEKILRIFDLNRPDAP---PREVGN  143 (268)
Q Consensus        83 ~~v~iw~~~~~~~~---~~~~~~~~v~~v~~~~-------------~~~~l~s~~~d~~i~~~d~~~~~~~---~~~~~~  143 (268)
                      +.|++||+.+....   ....|...|.+++|+|             +++.+++++.|+.|++||++.+...   ......
T Consensus       125 ~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  204 (379)
T 3jrp_A          125 GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG  204 (379)
T ss_dssp             SEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECC
T ss_pred             CcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEec
Confidence            99999999877432   2335788999999999             6999999999999999998765422   234456


Q ss_pred             CcccEEEEEEeCCC--CcEEEEeeCCCeEEEEeCCCCc---eEEeec---CCCCEEEEEECCCCcEEEE-eCCCeEEEEe
Q 024372          144 SSGSIRTVAWLHSD--QTILSSCTDSGGVRLWDARSGK---IVQTLE---TKSPVTSAEVSRDGRYITT-ADGSSVKFWD  214 (268)
Q Consensus       144 ~~~~v~~~~~~~~~--~~~~~~~~~d~~i~iwd~~~~~---~~~~~~---~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd  214 (268)
                      |.+.+.+++|+|++  +.++++++.||.|++||+++++   ....+.   +...+.+++|+|+|++|++ +.|+.|++||
T Consensus       205 h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~  284 (379)
T 3jrp_A          205 HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK  284 (379)
T ss_dssp             CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEE
T ss_pred             ccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEe
Confidence            78899999999984  5677788888999999999874   222222   4567999999999988765 5789999999


Q ss_pred             CCC
Q 024372          215 ANH  217 (268)
Q Consensus       215 ~~~  217 (268)
                      +..
T Consensus       285 ~~~  287 (379)
T 3jrp_A          285 ENL  287 (379)
T ss_dssp             EEE
T ss_pred             CCC
Confidence            863

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=1.3e-29  Score=211.77  Aligned_cols=214  Identities=17%  Similarity=0.262  Sum_probs=174.4

Q ss_pred             ecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCC---------CeEEEeeCccCcEEEEEecCC--CcEE
Q 024372            8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG---------DWIGTFEGHKGAVWSCCLDAN--ALFS   76 (268)
Q Consensus         8 ~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~---------~~~~~~~~h~~~V~~~~~~~~--~~~l   76 (268)
                      ....+.+|..+|.+++|+|. .++++|++|+.|++|++||..++         +.+..+.+|.+.|.+++|+|+  +.++
T Consensus        49 ~~~~~~~~~~~v~~~~~~~~-~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  127 (351)
T 3f3f_A           49 LSDSWRAHDSSIVAIDWASP-EYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKL  127 (351)
T ss_dssp             EEEEEECCSSCEEEEEECCG-GGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEE
T ss_pred             ecceeccCCCcEEEEEEcCC-CCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEE
Confidence            34445689999999999862 15889999999999999999887         567888999999999999999  9999


Q ss_pred             EEeeCCCcEEEEeCCCCCeeeee--------------ccCCeEEEEEECCC---CCEEEEeeCCCeEEEEECCCCCCC-C
Q 024372           77 ASGSADFTAKLWDALTGDEKHSF--------------EHKHIVRACAFSED---THLLLTGGFEKILRIFDLNRPDAP-P  138 (268)
Q Consensus        77 ~s~s~D~~v~iw~~~~~~~~~~~--------------~~~~~v~~v~~~~~---~~~l~s~~~d~~i~~~d~~~~~~~-~  138 (268)
                      ++++.|+.|++||+.++.....+              .+...+.++.|+|+   +..+++++.++.+.+|+...+... .
T Consensus       128 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  207 (351)
T 3f3f_A          128 ACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVA  207 (351)
T ss_dssp             EEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEE
T ss_pred             EEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeee
Confidence            99999999999999877654332              25567899999997   899999999999988876544321 2


Q ss_pred             eEecCCcccEEEEEEeCCCC---cEEEEeeCCCeEEEEeCCCC-------------------------------------
Q 024372          139 REVGNSSGSIRTVAWLHSDQ---TILSSCTDSGGVRLWDARSG-------------------------------------  178 (268)
Q Consensus       139 ~~~~~~~~~v~~~~~~~~~~---~~~~~~~~d~~i~iwd~~~~-------------------------------------  178 (268)
                      .....|.+.|.+++|+|++.   .++++++.||.|++||++++                                     
T Consensus       208 ~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (351)
T 3f3f_A          208 AKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEK  287 (351)
T ss_dssp             EECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC------------------------------------
T ss_pred             eecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccccccccccccccccee
Confidence            34456788999999999873   67888888999999999875                                     


Q ss_pred             ---------ceEEeec-CCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeee
Q 024372          179 ---------KIVQTLE-TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVK  222 (268)
Q Consensus       179 ---------~~~~~~~-~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~  222 (268)
                               +.+..+. +...+.+++|+|++++|++ +.|+.|++||+...+.++
T Consensus       288 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~  342 (351)
T 3f3f_A          288 AELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFK  342 (351)
T ss_dssp             ---CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEE
T ss_pred             eeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchh
Confidence                     4455555 3467999999999988765 578999999998765443

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=7.2e-29  Score=215.01  Aligned_cols=245  Identities=11%  Similarity=0.085  Sum_probs=200.0

Q ss_pred             CCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEE-----EeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeC
Q 024372           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIG-----TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA   90 (268)
Q Consensus        16 ~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~-----~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~   90 (268)
                      ...+.+++|+|   ++.++++++.|++|++||..+++.+.     .+.+|.+.|.+++|++++.++++++.|+.|++||+
T Consensus       122 ~~~~~~~~~s~---~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~  198 (433)
T 3bws_A          122 GFQPKSVRFID---NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDL  198 (433)
T ss_dssp             SSCBCCCEESS---SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEET
T ss_pred             CCCceEEEEeC---CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEEC
Confidence            34566899986   78899999999999999999999887     45689999999999999999999999999999999


Q ss_pred             CCCCeeeeec-cCCeEEEEEECCCCCEEE-EeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEee---
Q 024372           91 LTGDEKHSFE-HKHIVRACAFSEDTHLLL-TGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT---  165 (268)
Q Consensus        91 ~~~~~~~~~~-~~~~v~~v~~~~~~~~l~-s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---  165 (268)
                      .+++....+. |...+.+++|+|+++.++ +++.|+.|++||+++++. ..... ..+.+.+++|+|++..+++++.   
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~-~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~  276 (433)
T 3bws_A          199 KTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLE-IRKTD-KIGLPRGLLLSKDGKELYIAQFSAS  276 (433)
T ss_dssp             TTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEE-EEECC-CCSEEEEEEECTTSSEEEEEEEESC
T ss_pred             CCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcE-EEEec-CCCCceEEEEcCCCCEEEEEECCCC
Confidence            9988877775 677899999999998775 555899999999876532 22222 3456889999998877666653   


Q ss_pred             ----CCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEE-EE-eCCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCC
Q 024372          166 ----DSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYI-TT-ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKL  239 (268)
Q Consensus       166 ----~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l-~~-~~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  239 (268)
                          .|+.|++||+++++.+..+.+...+.+++|+|+++.+ ++ +.++.|++||+++.+.+..+.....+..+++++ +
T Consensus       277 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~-d  355 (433)
T 3bws_A          277 NQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSP-D  355 (433)
T ss_dssp             TTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECT-T
T ss_pred             ccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcC-C
Confidence                4689999999999988877665678899999999754 44 468999999999988888887766677788887 5


Q ss_pred             CCEEEeccC---------------CCeEEEEECCCCcEEeec
Q 024372          240 GNIFIAGGE---------------DMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       240 ~~~~~~gs~---------------d~~i~~wd~~~g~~~~~~  266 (268)
                      ++++++++.               |+.|++||..+++.+..+
T Consensus       356 g~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~  397 (433)
T 3bws_A          356 GKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFW  397 (433)
T ss_dssp             SSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEE
T ss_pred             CCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEe
Confidence            877776655               569999999999887653

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=4.7e-30  Score=213.09  Aligned_cols=173  Identities=12%  Similarity=0.005  Sum_probs=132.2

Q ss_pred             CCCeEEeeC-CCCCeEEEeeCccCcEEEEEecC---CCcEEEEeeCCCcEEEEeCCCCCeeeeec-cC---CeEEEEEEC
Q 024372           40 DSSPMLRNG-ETGDWIGTFEGHKGAVWSCCLDA---NALFSASGSADFTAKLWDALTGDEKHSFE-HK---HIVRACAFS  111 (268)
Q Consensus        40 d~~i~iw~~-~~~~~~~~~~~h~~~V~~~~~~~---~~~~l~s~s~D~~v~iw~~~~~~~~~~~~-~~---~~v~~v~~~  111 (268)
                      |++|++|++ .+|+.+..+.+|...+..++|++   ++.+|+|++.|++|||||+.++++++++. |.   ..+.+++|+
T Consensus       156 d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafS  235 (356)
T 2w18_A          156 DQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYS  235 (356)
T ss_dssp             TCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEE
T ss_pred             CCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEEC
Confidence            888889988 44888888888888888888888   67899999999999999999999988885 32   357778999


Q ss_pred             CCCCEE------------EEeeCCCeEEEEECCCCCCCCeE----ecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeC
Q 024372          112 EDTHLL------------LTGGFEKILRIFDLNRPDAPPRE----VGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA  175 (268)
Q Consensus       112 ~~~~~l------------~s~~~d~~i~~~d~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~  175 (268)
                      |+++++            ++|+.|++|++||..++......    ...|.+.+.+..+.   +.++++++.|++|+|||+
T Consensus       236 pdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s---g~~lASgS~DgTIkIWDl  312 (356)
T 2w18_A          236 EMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK---DHCAAAILTSGTIAIWDL  312 (356)
T ss_dssp             ETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE---TTEEEEEETTSCEEEEET
T ss_pred             CCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC---CCEEEEEcCCCcEEEEEC
Confidence            999876            66889999999998765322111    12333344433332   346788888999999999


Q ss_pred             CCCceEEeecCC-CC-EEEEEECCCCcEEEEe-CCCeEEEEeC
Q 024372          176 RSGKIVQTLETK-SP-VTSAEVSRDGRYITTA-DGSSVKFWDA  215 (268)
Q Consensus       176 ~~~~~~~~~~~~-~~-v~~~~~s~~g~~l~~~-~~~~v~~wd~  215 (268)
                      +++++++++..+ .. +.+++|+|||++|+++ .|++|++||+
T Consensus       313 ~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          313 LLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             TTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             CCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            999999999854 33 4468999999998765 6899999995

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=1e-30  Score=224.98  Aligned_cols=206  Identities=12%  Similarity=0.014  Sum_probs=156.2

Q ss_pred             eeecCCCeeeEEEecC-----CCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCc-EEEEeeCCCcE
Q 024372           12 CHGHSRPVVDLFYSPI-----TPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANAL-FSASGSADFTA   85 (268)
Q Consensus        12 ~~~h~~~v~~~~f~~~-----~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~-~l~s~s~D~~v   85 (268)
                      +.||++.|++++|+|.     ..||++||+|+.|++|+|||+.++..+..+.+|.++|.+++|+|++. ++++++.|++|
T Consensus       132 ~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v  211 (393)
T 4gq1_A          132 KSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNI  211 (393)
T ss_dssp             TTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEE
T ss_pred             cCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEE
Confidence            4699999999999973     23899999999999999999999888888888999999999999874 79999999999


Q ss_pred             EEEeCCCCCeeeee--------------------------ccCCeEEEEEEC-CCCCEEEEeeCCCeEEEEECCCCCCCC
Q 024372           86 KLWDALTGDEKHSF--------------------------EHKHIVRACAFS-EDTHLLLTGGFEKILRIFDLNRPDAPP  138 (268)
Q Consensus        86 ~iw~~~~~~~~~~~--------------------------~~~~~v~~v~~~-~~~~~l~s~~~d~~i~~~d~~~~~~~~  138 (268)
                      ++||+.+++.....                          .|...+.++.|+ ++++.+++++.|+.+++||+...... 
T Consensus       212 ~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~-  290 (393)
T 4gq1_A          212 RIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDY-  290 (393)
T ss_dssp             EEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------
T ss_pred             EEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCC-
Confidence            99999876543221                          244567788875 79999999999999999998654321 


Q ss_pred             eEecCCcccE------------------EEEEEeC-CCCcEEEEeeCCCeEEEEeCCCCceEEee-cCCCCEEEEEECCC
Q 024372          139 REVGNSSGSI------------------RTVAWLH-SDQTILSSCTDSGGVRLWDARSGKIVQTL-ETKSPVTSAEVSRD  198 (268)
Q Consensus       139 ~~~~~~~~~v------------------~~~~~~~-~~~~~~~~~~~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~s~~  198 (268)
                      ..+..+...+                  ....+.+ .+..++++++.||.|+|||+.+++++..+ .++.+|.+++|+||
T Consensus       291 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspd  370 (393)
T 4gq1_A          291 NEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQD  370 (393)
T ss_dssp             -------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTT
T ss_pred             ceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCC
Confidence            1111111111                  1223333 34556778888999999999999877654 46678999999999


Q ss_pred             CcEEEEeCCCeEEEEeCCCc
Q 024372          199 GRYITTADGSSVKFWDANHF  218 (268)
Q Consensus       199 g~~l~~~~~~~v~~wd~~~~  218 (268)
                      |++|++++++.+.+|.+..+
T Consensus       371 G~~LA~as~~Gv~lvrL~gf  390 (393)
T 4gq1_A          371 GSHLAIATEGSVLLTRLMGF  390 (393)
T ss_dssp             SSEEEEEESSEEEEEEEGGG
T ss_pred             CCEEEEEeCCCeEEEEEeCc
Confidence            99999888888998887554

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=3e-29  Score=218.15  Aligned_cols=209  Identities=19%  Similarity=0.313  Sum_probs=175.3

Q ss_pred             eeecEEeeecCCCeeeEEEecCCCCCc-EEEEEeCCCCeEEeeCCCCCe-------EEEeeCccCcEEEEEecC-CCcEE
Q 024372            6 VAVPLVCHGHSRPVVDLFYSPITPDGF-FLVSASKDSSPMLRNGETGDW-------IGTFEGHKGAVWSCCLDA-NALFS   76 (268)
Q Consensus         6 ~~~~~~~~~h~~~v~~~~f~~~~~dg~-~l~s~s~d~~i~iw~~~~~~~-------~~~~~~h~~~V~~~~~~~-~~~~l   76 (268)
                      ......+.+|..+|.+++|+|   ++. +|++|+.|++|++|++.++..       ...+.+|...|.+++|+| ++.++
T Consensus       171 ~~~~~~~~~h~~~v~~l~~~~---~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l  247 (430)
T 2xyi_A          171 CQPDLRLRGHQKEGYGLSWNP---NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLF  247 (430)
T ss_dssp             CCCSEEEECCSSCCCCEEECT---TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEE
T ss_pred             CCCcEEecCCCCCeEEEEeCC---CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEE
Confidence            455666789999999999996   555 999999999999999988432       456779999999999999 67889


Q ss_pred             EEeeCCCcEEEEeCCCC---Ceeeee-ccCCeEEEEEECCCCC-EEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEE
Q 024372           77 ASGSADFTAKLWDALTG---DEKHSF-EHKHIVRACAFSEDTH-LLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTV  151 (268)
Q Consensus        77 ~s~s~D~~v~iw~~~~~---~~~~~~-~~~~~v~~v~~~~~~~-~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~  151 (268)
                      ++++.|+.|++||+.+.   .....+ .|...|++++|+|+++ ++++|+.|+.|++||++........+..|.+.+.++
T Consensus       248 ~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i  327 (430)
T 2xyi_A          248 GSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV  327 (430)
T ss_dssp             EEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEE
T ss_pred             EEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEE
Confidence            99999999999999876   344444 5888999999999886 789999999999999987555566776788999999


Q ss_pred             EEeCCCCcEEEEeeCCCeEEEEeCCC--------------CceEEeecC-CCCEEEEEECCCCc-EEE-EeCCCeEEEEe
Q 024372          152 AWLHSDQTILSSCTDSGGVRLWDARS--------------GKIVQTLET-KSPVTSAEVSRDGR-YIT-TADGSSVKFWD  214 (268)
Q Consensus       152 ~~~~~~~~~~~~~~~d~~i~iwd~~~--------------~~~~~~~~~-~~~v~~~~~s~~g~-~l~-~~~~~~v~~wd  214 (268)
                      +|+|++..++++++.|+.|+|||++.              .+.+..+.. ...+.+++|+|++. +++ ++.|+.|++|+
T Consensus       328 ~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~  407 (430)
T 2xyi_A          328 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ  407 (430)
T ss_dssp             EECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred             EECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence            99999888888888899999999987              245555554 45699999999998 555 46789999999


Q ss_pred             CCC
Q 024372          215 ANH  217 (268)
Q Consensus       215 ~~~  217 (268)
                      +..
T Consensus       408 ~~~  410 (430)
T 2xyi_A          408 MAE  410 (430)
T ss_dssp             ECH
T ss_pred             ccc
Confidence            864

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.1e-30  Score=227.81  Aligned_cols=190  Identities=13%  Similarity=0.076  Sum_probs=156.3

Q ss_pred             ecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccC-----cEEEEEecCCCcEEEEeeCCCcEEEE
Q 024372           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG-----AVWSCCLDANALFSASGSADFTAKLW   88 (268)
Q Consensus        14 ~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~-----~V~~~~~~~~~~~l~s~s~D~~v~iw   88 (268)
                      +|...|.+++|+|   ||++||+++.||++++|+...  ++..+. |..     .|.+++|+|+|++||+|+.||+|++|
T Consensus        83 ~~~~~V~~vawSP---dG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIW  156 (588)
T 2j04_A           83 QPVCYPRVCKPSP---IDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFF  156 (588)
T ss_dssp             SCSCCEEEEEECS---SSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEE
T ss_pred             CCCCcEEEEEECC---CCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEE
Confidence            6788999999995   999999999999999999644  777788 766     49999999999999999999999999


Q ss_pred             eCCCCCe-------eeee-----ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCC--CeEe-cCCcccEEEEEE
Q 024372           89 DALTGDE-------KHSF-----EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP--PREV-GNSSGSIRTVAW  153 (268)
Q Consensus        89 ~~~~~~~-------~~~~-----~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~--~~~~-~~~~~~v~~~~~  153 (268)
                      |+.++..       ..++     .|...|.+++|+|++  +++++.|+.+++||+......  .+.+ ..|...|.+++|
T Consensus       157 d~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaF  234 (588)
T 2j04_A          157 SIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKI  234 (588)
T ss_dssp             ECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEE
T ss_pred             ECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEE
Confidence            9988752       3443     366789999999999  788899999999998765432  1233 467788999999


Q ss_pred             eCCCCcEEEEeeCCCeEEEEeCCCCce-EEeecCCCCEEEEEE--CCCCcEEEEeC-CCeEEEEeCC
Q 024372          154 LHSDQTILSSCTDSGGVRLWDARSGKI-VQTLETKSPVTSAEV--SRDGRYITTAD-GSSVKFWDAN  216 (268)
Q Consensus       154 ~~~~~~~~~~~~~d~~i~iwd~~~~~~-~~~~~~~~~v~~~~~--s~~g~~l~~~~-~~~v~~wd~~  216 (268)
                      +  +. .++++++ ++|++||+.+++. ...+.+...+..+++  +|++..++++. +++ ++|...
T Consensus       235 s--g~-~LASa~~-~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          235 V--DY-KVVLTCP-GYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             E--TT-EEEEECS-SEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred             E--CC-EEEEEeC-CeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence            8  44 4555554 9999999998887 444566778999999  99998887764 788 999975

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=1.3e-28  Score=204.46  Aligned_cols=229  Identities=10%  Similarity=0.028  Sum_probs=159.0

Q ss_pred             cCCCCCcEEEEEeCCCCeEEeeCCCC---CeEEEeeCccCcE-------------------------EEEEecCC----C
Q 024372           26 PITPDGFFLVSASKDSSPMLRNGETG---DWIGTFEGHKGAV-------------------------WSCCLDAN----A   73 (268)
Q Consensus        26 ~~~~dg~~l~s~s~d~~i~iw~~~~~---~~~~~~~~h~~~V-------------------------~~~~~~~~----~   73 (268)
                      +...-...++...-..+|++|+..++   ++++++..|+.+|                         ++++++|+    +
T Consensus        48 ~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~  127 (356)
T 2w18_A           48 ERAGCKEPCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEK  127 (356)
T ss_dssp             C----CEEEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CC
T ss_pred             ccCCCCccEEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccc
Confidence            43333445666666788999999999   8899999988654                         55666777    7


Q ss_pred             cEEEEeeC--------------------CCcEEEEeCCC-CCeeeee-ccCCeEEEEEECC---CCCEEEEeeCCCeEEE
Q 024372           74 LFSASGSA--------------------DFTAKLWDALT-GDEKHSF-EHKHIVRACAFSE---DTHLLLTGGFEKILRI  128 (268)
Q Consensus        74 ~~l~s~s~--------------------D~~v~iw~~~~-~~~~~~~-~~~~~v~~v~~~~---~~~~l~s~~~d~~i~~  128 (268)
                      +++++++.                    |++|++|++.. ++.+... .|+..++.++|++   ++..|++|+.|++||+
T Consensus       128 ~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkI  207 (356)
T 2w18_A          128 QVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVI  207 (356)
T ss_dssp             EEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEE
T ss_pred             cEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEE
Confidence            77777653                    77788888743 5444433 4666777788887   6689999999999999


Q ss_pred             EECCCCCCCCeEecCC--cccEEEEEEeCCCCcE-----------EEEeeCCCeEEEEeCCCCceEEeec-----CC-CC
Q 024372          129 FDLNRPDAPPREVGNS--SGSIRTVAWLHSDQTI-----------LSSCTDSGGVRLWDARSGKIVQTLE-----TK-SP  189 (268)
Q Consensus       129 ~d~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~-----------~~~~~~d~~i~iwd~~~~~~~~~~~-----~~-~~  189 (268)
                      ||+.+++.......++  ...+.+++|+|++..+           +++|+.|++|++||+.+++++..+.     .+ ..
T Consensus       208 WDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~  287 (356)
T 2w18_A          208 WNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGR  287 (356)
T ss_dssp             EETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCC
T ss_pred             EECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcce
Confidence            9998876433333222  2356777898877544           3677888999999999999887652     22 22


Q ss_pred             EEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCCC-cee-eEEcCCCCCEEEeccCCCeEEEEEC
Q 024372          190 VTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCN-TES-ASLEPKLGNIFIAGGEDMWVHVFDF  257 (268)
Q Consensus       190 v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~gs~d~~i~~wd~  257 (268)
                      +.+..+  ++.++++ +.|++|+|||+.+++++.++..+.. ... ++|+| +|++|++|+.|++|++||+
T Consensus       288 ~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSP-DG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          288 FLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSG-TDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECS-SSSEEEEECTTSCEEEEEE
T ss_pred             eEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECC-CCCEEEEEECCCcEEEecC
Confidence            333333  3666665 4689999999999999999875543 343 57777 7999999999999999995

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=4.1e-28  Score=204.82  Aligned_cols=217  Identities=14%  Similarity=0.216  Sum_probs=168.1

Q ss_pred             eeCCCCCeEEEeeCccCcEEEEEecCC---CcEEEEeeCCCcEEEEeCCC-CCee-eee-ccCCeEEEEEECCCCCEEEE
Q 024372           46 RNGETGDWIGTFEGHKGAVWSCCLDAN---ALFSASGSADFTAKLWDALT-GDEK-HSF-EHKHIVRACAFSEDTHLLLT  119 (268)
Q Consensus        46 w~~~~~~~~~~~~~h~~~V~~~~~~~~---~~~l~s~s~D~~v~iw~~~~-~~~~-~~~-~~~~~v~~v~~~~~~~~l~s  119 (268)
                      ++....+.+..+.+|.+.|.+++|+|+   +.+|++|+.|+.|++||+.+ +... ..+ .|...|.+++|+|+++.|++
T Consensus        24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s  103 (368)
T 3mmy_A           24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFT  103 (368)
T ss_dssp             CSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred             CCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEE
Confidence            445566778889999999999999999   59999999999999999987 4443 333 48899999999999999999


Q ss_pred             eeCCCeEEEEECCCCCCCCeEecCCcccEEEEEE--eCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCCC--------
Q 024372          120 GGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAW--LHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSP--------  189 (268)
Q Consensus       120 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~--------  189 (268)
                      ++.|+.|++||++++..  .....|.+.+.+++|  .+++ .++++++.|+.|++||+++++.+..+..+..        
T Consensus       104 ~~~dg~v~iwd~~~~~~--~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  180 (368)
T 3mmy_A          104 ASCDKTAKMWDLSSNQA--IQIAQHDAPVKTIHWIKAPNY-SCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY  180 (368)
T ss_dssp             EETTSEEEEEETTTTEE--EEEEECSSCEEEEEEEECSSC-EEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEET
T ss_pred             EcCCCcEEEEEcCCCCc--eeeccccCceEEEEEEeCCCC-CEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecC
Confidence            99999999999986542  234457889999999  5544 5666778889999999999887766654332        


Q ss_pred             ----------------------------------EEEEEECCCCc-----EEEEeCCCeEEEEeCCCc---eeeeEEeCC
Q 024372          190 ----------------------------------VTSAEVSRDGR-----YITTADGSSVKFWDANHF---GLVKGYNMP  227 (268)
Q Consensus       190 ----------------------------------v~~~~~s~~g~-----~l~~~~~~~v~~wd~~~~---~~~~~~~~~  227 (268)
                                                        ..++.+.++..     +++++.++.|++||++..   ..+..+..+
T Consensus       181 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~  260 (368)
T 3mmy_A          181 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCH  260 (368)
T ss_dssp             TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECS
T ss_pred             CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeee
Confidence                                              23333333322     445667899999999875   344455443


Q ss_pred             C-------------CceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEeec
Q 024372          228 C-------------NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       228 ~-------------~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~~  266 (268)
                      .             .+..++++| ++++|++|+.|+.|++||+.+++++..+
T Consensus       261 ~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~i~iwd~~~~~~~~~~  311 (368)
T 3mmy_A          261 RSNGTNTSAPQDIYAVNGIAFHP-VHGTLATVGSDGRFSFWDKDARTKLKTS  311 (368)
T ss_dssp             EEC----CCCEEECCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEEEEC
T ss_pred             ecccccccccccccceEEEEEec-CCCEEEEEccCCeEEEEECCCCcEEEEe
Confidence            3             355677777 6899999999999999999999887764

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.8e-28  Score=227.25  Aligned_cols=211  Identities=18%  Similarity=0.235  Sum_probs=173.1

Q ss_pred             eeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC--eEEEeeCccCcEEEEEecCC--CcEEEEeeC
Q 024372            6 VAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDAN--ALFSASGSA   81 (268)
Q Consensus         6 ~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~--~~~~~~~h~~~V~~~~~~~~--~~~l~s~s~   81 (268)
                      ......+.+|.++|++++|+|. ++|++|++|+.|++|++||..+++  .+..+.+|...|.+++|+|+  +.++++|+.
T Consensus        43 ~~~~~~l~~h~~~V~~l~~s~~-~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~  121 (753)
T 3jro_A           43 HKLIDTLTGHEGPVWRVDWAHP-KFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS  121 (753)
T ss_dssp             EEEEEEECCCSSCEEEEEECCT-TSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred             CccceeccCCcCceEEEEecCC-CCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeC
Confidence            3444556799999999999862 238999999999999999999987  77888999999999999999  999999999


Q ss_pred             CCcEEEEeCCCCCe---eeeeccCCeEEEEEECC-------------CCCEEEEeeCCCeEEEEECCCCCCC---CeEec
Q 024372           82 DFTAKLWDALTGDE---KHSFEHKHIVRACAFSE-------------DTHLLLTGGFEKILRIFDLNRPDAP---PREVG  142 (268)
Q Consensus        82 D~~v~iw~~~~~~~---~~~~~~~~~v~~v~~~~-------------~~~~l~s~~~d~~i~~~d~~~~~~~---~~~~~  142 (268)
                      |+.|++||+.++..   .....|...|.++.|+|             +++.+++|+.|+.|++||++.+...   .....
T Consensus       122 dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~  201 (753)
T 3jro_A          122 DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE  201 (753)
T ss_dssp             TSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEEC
T ss_pred             CCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeec
Confidence            99999999987733   23335788999999999             5899999999999999998765322   23445


Q ss_pred             CCcccEEEEEEeCCC--CcEEEEeeCCCeEEEEeCCCCce-----EEee-cCCCCEEEEEECCCCcEEEE-eCCCeEEEE
Q 024372          143 NSSGSIRTVAWLHSD--QTILSSCTDSGGVRLWDARSGKI-----VQTL-ETKSPVTSAEVSRDGRYITT-ADGSSVKFW  213 (268)
Q Consensus       143 ~~~~~v~~~~~~~~~--~~~~~~~~~d~~i~iwd~~~~~~-----~~~~-~~~~~v~~~~~s~~g~~l~~-~~~~~v~~w  213 (268)
                      .|.+.|.+++|+|++  +.++++++.||.|++||+++++.     +... .+...+.+++|+|+|+++++ +.|+.|++|
T Consensus       202 ~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vw  281 (753)
T 3jro_A          202 GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW  281 (753)
T ss_dssp             CCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECC
T ss_pred             CCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEE
Confidence            688899999999984  56777888889999999998742     1111 24456899999999988776 468999999


Q ss_pred             eCCC
Q 024372          214 DANH  217 (268)
Q Consensus       214 d~~~  217 (268)
                      |++.
T Consensus       282 d~~~  285 (753)
T 3jro_A          282 KENL  285 (753)
T ss_dssp             BCCS
T ss_pred             ecCC
Confidence            9874

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=4.3e-26  Score=197.59  Aligned_cols=248  Identities=14%  Similarity=0.056  Sum_probs=188.0

Q ss_pred             EEeeecCCCeeeEEEecC-----------CCCCcEEEEEeCC------CCeEEeeCCCCCeEEEeeCccCcEEEEEecCC
Q 024372           10 LVCHGHSRPVVDLFYSPI-----------TPDGFFLVSASKD------SSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN   72 (268)
Q Consensus        10 ~~~~~h~~~v~~~~f~~~-----------~~dg~~l~s~s~d------~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~   72 (268)
                      ..+.+|...+..+++++.           .+.+..++.++.+      ++|++||.. ++....+.+|.+.|.+++|+|+
T Consensus       111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spd  189 (415)
T 2hqs_A          111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPD  189 (415)
T ss_dssp             EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTT
T ss_pred             eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCC
Confidence            446688888887777641           1125567777665      789999997 4456678889999999999999


Q ss_pred             CcEEEEeeCCC---cEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEE-EeeCCC--eEEEEECCCCCCCCeEecCCcc
Q 024372           73 ALFSASGSADF---TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL-TGGFEK--ILRIFDLNRPDAPPREVGNSSG  146 (268)
Q Consensus        73 ~~~l~s~s~D~---~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~-s~~~d~--~i~~~d~~~~~~~~~~~~~~~~  146 (268)
                      ++++++++.|+   .|++||+.+++......+...+.+++|+|+++.|+ +++.++  .|++||+.+++  ...+..+.+
T Consensus       190 g~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~--~~~l~~~~~  267 (415)
T 2hqs_A          190 GSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ--IRQVTDGRS  267 (415)
T ss_dssp             SSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC--EEECCCCSS
T ss_pred             CCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC--EEeCcCCCC
Confidence            99999999885   99999999998876666888899999999999777 666555  48999987653  244555667


Q ss_pred             cEEEEEEeCCCCcEEEEeeCCC--eEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEe-C---CCeEEEEeCCCcee
Q 024372          147 SIRTVAWLHSDQTILSSCTDSG--GVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-D---GSSVKFWDANHFGL  220 (268)
Q Consensus       147 ~v~~~~~~~~~~~~~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~---~~~v~~wd~~~~~~  220 (268)
                      .+.+++|+|++..++.++.+++  .|.+||+.+++......+...+.+++|+|+|++|+.+ .   +..|.+||+.+.+.
T Consensus       268 ~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~  347 (415)
T 2hqs_A          268 NNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV  347 (415)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE
T ss_pred             cccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE
Confidence            8999999999887776665445  6888899988755433344568899999999988654 2   25899999988765


Q ss_pred             eeEEeCCCCceeeEEcCCCCCEEEeccCCC---eEEEEECCCCcE
Q 024372          221 VKGYNMPCNTESASLEPKLGNIFIAGGEDM---WVHVFDFHTGEQ  262 (268)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~---~i~~wd~~~g~~  262 (268)
                      .. +..........++| +|++|+.++.|+   .|++||+..++.
T Consensus       348 ~~-l~~~~~~~~~~~sp-dg~~l~~~s~~~~~~~l~~~d~~g~~~  390 (415)
T 2hqs_A          348 QV-LSSTFLDETPSLAP-NGTMVIYSSSQGMGSVLNLVSTDGRFK  390 (415)
T ss_dssp             EE-CCCSSSCEEEEECT-TSSEEEEEEEETTEEEEEEEETTSCCE
T ss_pred             EE-ecCCCCcCCeEEcC-CCCEEEEEEcCCCccEEEEEECCCCcE
Confidence            33 33333556777777 699999888776   899999875443

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.96  E-value=8.8e-27  Score=197.79  Aligned_cols=212  Identities=10%  Similarity=0.138  Sum_probs=147.4

Q ss_pred             EeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEE-EEeeCC
Q 024372           45 LRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLL-LTGGFE  123 (268)
Q Consensus        45 iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l-~s~~~d  123 (268)
                      +|+..+.+.+.++..|.+.|.+++|+|++.++++|+.|+ +++|++.+........+. .+..+.+.++++.+ ++++.|
T Consensus         3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d   80 (355)
T 3vu4_A            3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR-HLSKVRMLHRTNYVAFVTGVK   80 (355)
T ss_dssp             ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS-CCCEEEECTTSSEEEEECSST
T ss_pred             cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC-CeEEEEEcCCCCEEEEEECCc
Confidence            456666777777889999999999999999999988775 789999877665554433 47778888888777 567888


Q ss_pred             CeEEEEECCCCCCCCeEecCCcccEEEEEEeCCC-----------------------------------CcEEEE-eeCC
Q 024372          124 KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSD-----------------------------------QTILSS-CTDS  167 (268)
Q Consensus       124 ~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------------------------------~~~~~~-~~~d  167 (268)
                      +.|++||+.+++.. .... +...+.++.++++.                                   ..++++ ++.+
T Consensus        81 ~~v~iWd~~~~~~~-~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~  158 (355)
T 3vu4_A           81 EVVHIWDDVKKQDV-SRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNL  158 (355)
T ss_dssp             TEEEEEETTTTEEE-EEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCT
T ss_pred             cEEEEEECCCCcEE-EEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcC
Confidence            99999998765432 2222 34466666665421                                   122222 5677


Q ss_pred             CeEEEEeCCCCc----------------eEEeec-CCCCEEEEEECCCCcEEEE-eCCCe-EEEEeCCCceeeeEEe---
Q 024372          168 GGVRLWDARSGK----------------IVQTLE-TKSPVTSAEVSRDGRYITT-ADGSS-VKFWDANHFGLVKGYN---  225 (268)
Q Consensus       168 ~~i~iwd~~~~~----------------~~~~~~-~~~~v~~~~~s~~g~~l~~-~~~~~-v~~wd~~~~~~~~~~~---  225 (268)
                      |.|++||+++++                ++..+. +..+|.+++|+|+|++|++ +.|++ |++||+++++++..+.   
T Consensus       159 g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~  238 (355)
T 3vu4_A          159 GQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGL  238 (355)
T ss_dssp             TCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTT
T ss_pred             cEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC
Confidence            899999998765                145555 4567999999999998876 56888 9999999999998887   


Q ss_pred             CCCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCc
Q 024372          226 MPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGE  261 (268)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~  261 (268)
                      +...+..++++| ++++|++|+.|+.|++||+.++.
T Consensus       239 h~~~v~~~~~s~-~~~~l~s~s~d~~v~iw~~~~~~  273 (355)
T 3vu4_A          239 DRADVVDMKWST-DGSKLAVVSDKWTLHVFEIFNDQ  273 (355)
T ss_dssp             CCSCEEEEEECT-TSCEEEEEETTCEEEEEESSCCS
T ss_pred             CCCcEEEEEECC-CCCEEEEEECCCEEEEEEccCCC
Confidence            344566777777 69999999999999999997653

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.95  E-value=2.7e-25  Score=198.63  Aligned_cols=235  Identities=13%  Similarity=0.162  Sum_probs=187.7

Q ss_pred             CCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeC--CCCCeeeeeccCCeEE
Q 024372           29 PDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA--LTGDEKHSFEHKHIVR  106 (268)
Q Consensus        29 ~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~--~~~~~~~~~~~~~~v~  106 (268)
                      |++.++++++.|++|.+||..+++++.++..+.. +..++|+|+++++++++.|++|++||+  .+++.+..+.+...++
T Consensus       147 p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~  225 (543)
T 1nir_A          147 LPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEAR  225 (543)
T ss_dssp             GGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEE
T ss_pred             CCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcc
Confidence            4889999999999999999999999999984333 889999999999999999999999999  8888888888888889


Q ss_pred             EEEECC----CCCEEEEee-CCCeEEEEECCCCCCCCeEecC-----------CcccEEEEEEeCCCCcEEEEeeCCCeE
Q 024372          107 ACAFSE----DTHLLLTGG-FEKILRIFDLNRPDAPPREVGN-----------SSGSIRTVAWLHSDQTILSSCTDSGGV  170 (268)
Q Consensus       107 ~v~~~~----~~~~l~s~~-~d~~i~~~d~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~~~~~~~~d~~i  170 (268)
                      .++|+|    +++++++++ .+++|.+||..+.+.. ..+..           ....+..+.++|++..++++..++++|
T Consensus       226 ~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~-~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i  304 (543)
T 1nir_A          226 SVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPK-QIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKV  304 (543)
T ss_dssp             EEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEE-EEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred             eEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccc-eeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeE
Confidence            999999    999999988 4899999998765432 22211           223678899999888888888889999


Q ss_pred             EEEeCCCCceEE--eecCCCCEEEEEECCCCcEEE-Ee-CCCeEEEEeCCCceeeeEEeCC---CCceeeE-EcCCCCCE
Q 024372          171 RLWDARSGKIVQ--TLETKSPVTSAEVSRDGRYIT-TA-DGSSVKFWDANHFGLVKGYNMP---CNTESAS-LEPKLGNI  242 (268)
Q Consensus       171 ~iwd~~~~~~~~--~~~~~~~v~~~~~s~~g~~l~-~~-~~~~v~~wd~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~  242 (268)
                      .+||+.+.+.+.  .+.....+..+.|+|+|+++. ++ .+++|.+||+.+++++..+...   ....... ++|+.+..
T Consensus       305 ~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~  384 (543)
T 1nir_A          305 LLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPV  384 (543)
T ss_dssp             EEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEE
T ss_pred             EEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccE
Confidence            999998876544  555555577899999999765 43 4689999999999988877642   1111222 34545777


Q ss_pred             EEecc-CCCeEEEEECCC-------CcEEee
Q 024372          243 FIAGG-EDMWVHVFDFHT-------GEQIAI  265 (268)
Q Consensus       243 ~~~gs-~d~~i~~wd~~~-------g~~~~~  265 (268)
                      +++++ .|+.|.+||+.+       ++.+..
T Consensus       385 ~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~  415 (543)
T 1nir_A          385 WSTSHLGDGSISLIGTDPKNHPQYAWKKVAE  415 (543)
T ss_dssp             EEEEBSSSSEEEEEECCTTTCTTTBTSEEEE
T ss_pred             EEeccCCCceEEEEEeCCCCCchhcCeEEEE
Confidence            88876 689999999987       666554

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.94  E-value=3.1e-24  Score=179.41  Aligned_cols=244  Identities=11%  Similarity=0.043  Sum_probs=181.8

Q ss_pred             eecCCCeeeEEEecCCCCCcEEEEEeC-CCCeEEeeCCCCCe-EEEeeCccCcEEEEEecCCCcEEEEeeCC-C--cEEE
Q 024372           13 HGHSRPVVDLFYSPITPDGFFLVSASK-DSSPMLRNGETGDW-IGTFEGHKGAVWSCCLDANALFSASGSAD-F--TAKL   87 (268)
Q Consensus        13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~-d~~i~iw~~~~~~~-~~~~~~h~~~V~~~~~~~~~~~l~s~s~D-~--~v~i   87 (268)
                      ..+..++ .++|+|   +|++|++++. ++.+.+||..+++. ...+..+..+...++|+|++++++++..+ +  .|++
T Consensus        37 ~~~~~~~-~~~~s~---dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v  112 (331)
T 3u4y_A           37 TLGYDFV-DTAITS---DCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQS  112 (331)
T ss_dssp             ECCCCEE-EEEECS---SSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEE
T ss_pred             EccCCcc-eEEEcC---CCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEE
Confidence            3445556 899985   8886766666 88999999999998 77787777777669999999988855555 3  8999


Q ss_pred             EeCCCCCeeeeeccCCeEEEEEECCCCCEEE-EeeCCCe-EEEEECCCCCCCC---eEecCCcccEEEEEEeCCCCcEEE
Q 024372           88 WDALTGDEKHSFEHKHIVRACAFSEDTHLLL-TGGFEKI-LRIFDLNRPDAPP---REVGNSSGSIRTVAWLHSDQTILS  162 (268)
Q Consensus        88 w~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~-s~~~d~~-i~~~d~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~  162 (268)
                      ||+.+++....+........++|+|+++.++ +...++. +.+|++.......   ............++|+|++..+++
T Consensus       113 ~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v  192 (331)
T 3u4y_A          113 YSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFV  192 (331)
T ss_dssp             EETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEE
T ss_pred             EECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEE
Confidence            9999998888887777778999999998555 4456577 9999987433221   111122345788999999887888


Q ss_pred             EeeCCCeEEEEeCCCCce---EEeecCCCCEEEEEECCCCcEEEEe--CCCeEEEEeCCCcee--eeEEeCC----CCc-
Q 024372          163 SCTDSGGVRLWDARSGKI---VQTLETKSPVTSAEVSRDGRYITTA--DGSSVKFWDANHFGL--VKGYNMP----CNT-  230 (268)
Q Consensus       163 ~~~~d~~i~iwd~~~~~~---~~~~~~~~~v~~~~~s~~g~~l~~~--~~~~v~~wd~~~~~~--~~~~~~~----~~~-  230 (268)
                      ++..++.|++||+++++.   +..+.....+..++|+|+|+++..+  .++.|.+||+.+.+.  +..+...    ... 
T Consensus       193 ~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~  272 (331)
T 3u4y_A          193 ANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPL  272 (331)
T ss_dssp             EETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGG
T ss_pred             EeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCc
Confidence            877789999999999988   7777776778899999999976543  357899999988766  4443322    111 


Q ss_pred             ---eeeEEcCCCCCEEE-eccCCCeEEEEECCCCc
Q 024372          231 ---ESASLEPKLGNIFI-AGGEDMWVHVFDFHTGE  261 (268)
Q Consensus       231 ---~~~~~~~~~~~~~~-~gs~d~~i~~wd~~~g~  261 (268)
                         ..+.+++ ++++++ ++..++.|++||+.+.+
T Consensus       273 ~~~~~~~~sp-dg~~l~v~~~~~~~v~v~d~~~~~  306 (331)
T 3u4y_A          273 FGANQMALNK-TETKLFISANISRELKVFTISGKV  306 (331)
T ss_dssp             TTCCCEEECT-TSSEEEEEETTTTEEEEEETTSCE
T ss_pred             ccccceEECC-CCCEEEEecCCCCcEEEEEecCCc
Confidence               1247777 577665 55667799999997544

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.94  E-value=7.4e-24  Score=189.37  Aligned_cols=238  Identities=12%  Similarity=0.103  Sum_probs=186.7

Q ss_pred             eeeEEEecCCCCCcEEEEEeCCCCeEEeeC--CCCCeEEEeeCccCcEEEEEecC----CCcEEEEee-CCCcEEEEeCC
Q 024372           19 VVDLFYSPITPDGFFLVSASKDSSPMLRNG--ETGDWIGTFEGHKGAVWSCCLDA----NALFSASGS-ADFTAKLWDAL   91 (268)
Q Consensus        19 v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~--~~~~~~~~~~~h~~~V~~~~~~~----~~~~l~s~s-~D~~v~iw~~~   91 (268)
                      +..++|+|   ||++|++++.|++|.+||.  .+++.+.++.. ...++.++|+|    +++++++++ .+++|.+||..
T Consensus       181 ~~~v~~sp---dg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~  256 (543)
T 1nir_A          181 VHISRMSA---SGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGE  256 (543)
T ss_dssp             EEEEEECT---TSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETT
T ss_pred             cceEEECC---CCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecc
Confidence            88899985   9999999999999999999  88999999984 45679999999    999998887 58999999999


Q ss_pred             CCCeeeeecc-----------CC-eEEEEEECCCCC-EEEEeeCCCeEEEEECCCCCCCCe-EecCCcccEEEEEEeCCC
Q 024372           92 TGDEKHSFEH-----------KH-IVRACAFSEDTH-LLLTGGFEKILRIFDLNRPDAPPR-EVGNSSGSIRTVAWLHSD  157 (268)
Q Consensus        92 ~~~~~~~~~~-----------~~-~v~~v~~~~~~~-~l~s~~~d~~i~~~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~  157 (268)
                      +++++..+..           .. .+..+.++|++. ++++...++.|.+||..+.+.... .+ .+......+.|+|++
T Consensus       257 t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg  335 (543)
T 1nir_A          257 TLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSH  335 (543)
T ss_dssp             TCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTS
T ss_pred             ccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCC
Confidence            9988777642           22 578899999665 556677889999999876543321 22 233456678999999


Q ss_pred             CcEEEEeeCCCeEEEEeCCCCceEEeecC----C-CCEEEEEECCC-CcEEEEe--CCCeEEEEeCCC-------ceeee
Q 024372          158 QTILSSCTDSGGVRLWDARSGKIVQTLET----K-SPVTSAEVSRD-GRYITTA--DGSSVKFWDANH-------FGLVK  222 (268)
Q Consensus       158 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~----~-~~v~~~~~s~~-g~~l~~~--~~~~v~~wd~~~-------~~~~~  222 (268)
                      ..+++++..+++|.+||+++++++.++..    + .....+ ++|+ |.+++++  .+++|.+||+.+       +++++
T Consensus       336 ~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~  414 (543)
T 1nir_A          336 RYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVA  414 (543)
T ss_dssp             CEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEE
T ss_pred             CEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEE
Confidence            88888887789999999999999887763    2 222232 5787 5656665  468999999988       88899


Q ss_pred             EEeCCCC-ceeeEEcCCCCCEEEecc-------CCCeEEEEECCCCcEE
Q 024372          223 GYNMPCN-TESASLEPKLGNIFIAGG-------EDMWVHVFDFHTGEQI  263 (268)
Q Consensus       223 ~~~~~~~-~~~~~~~~~~~~~~~~gs-------~d~~i~~wd~~~g~~~  263 (268)
                      ++..+.. ...+.++| ++++|++++       .+..|.+||+.+++.+
T Consensus       415 ~l~~~g~~~~~v~~~p-dg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~  462 (543)
T 1nir_A          415 ELQGQGGGSLFIKTHP-KSSHLYVDTTFNPDARISQSVAVFDLKNLDAK  462 (543)
T ss_dssp             EEECSCSCCCCEECCT-TCCEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred             EEEcCCCCceEEEcCC-CCCcEEEecCCCCCcccCceEEEEECCCCCCC
Confidence            9987654 35566666 688888887       2679999999988765

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.94  E-value=1.8e-23  Score=174.98  Aligned_cols=245  Identities=14%  Similarity=0.143  Sum_probs=176.6

Q ss_pred             eecCCCeeeEEEecCCCCCcEEEEEeCC-CCeEEeeCC--CCC--eEEEeeCccCcEEEEEecCCCcEEEEee-CCCcEE
Q 024372           13 HGHSRPVVDLFYSPITPDGFFLVSASKD-SSPMLRNGE--TGD--WIGTFEGHKGAVWSCCLDANALFSASGS-ADFTAK   86 (268)
Q Consensus        13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d-~~i~iw~~~--~~~--~~~~~~~h~~~V~~~~~~~~~~~l~s~s-~D~~v~   86 (268)
                      ..|...+.+++|+|   +|++|++++.+ +.+.+|++.  +++  .+..+..+. .+..++|+|++.+++.++ .++.|+
T Consensus        34 ~~~~~~~~~~~~sp---dg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~  109 (343)
T 1ri6_A           34 VDVPGQVQPMVVSP---DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVS  109 (343)
T ss_dssp             EECSSCCCCEEECT---TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEE
T ss_pred             EecCCCCceEEECC---CCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEE
Confidence            46888899999985   89989988887 899999987  565  345565544 788899999999776555 588999


Q ss_pred             EEeCC---CCCeeeeeccCCeEEEEEECCCCCEEEEee-CCCeEEEEECCC-CCCCC----eEecCCcccEEEEEEeCCC
Q 024372           87 LWDAL---TGDEKHSFEHKHIVRACAFSEDTHLLLTGG-FEKILRIFDLNR-PDAPP----REVGNSSGSIRTVAWLHSD  157 (268)
Q Consensus        87 iw~~~---~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~-~d~~i~~~d~~~-~~~~~----~~~~~~~~~v~~~~~~~~~  157 (268)
                      +||+.   .......+.....+..++|+|+++.+++++ .++.+++||+.. +....    .........+..++|+|++
T Consensus       110 ~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg  189 (343)
T 1ri6_A          110 VTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNE  189 (343)
T ss_dssp             EEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTS
T ss_pred             EEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCC
Confidence            99994   333444455555688899999999888777 899999999975 32111    1111233467789999988


Q ss_pred             CcEEEEeeCCCeEEEEeCCC--Cce--EEee---cC----CCCEEEEEECCCCcEEE-Ee-CCCeEEEEeCC----Ccee
Q 024372          158 QTILSSCTDSGGVRLWDARS--GKI--VQTL---ET----KSPVTSAEVSRDGRYIT-TA-DGSSVKFWDAN----HFGL  220 (268)
Q Consensus       158 ~~~~~~~~~d~~i~iwd~~~--~~~--~~~~---~~----~~~v~~~~~s~~g~~l~-~~-~~~~v~~wd~~----~~~~  220 (268)
                      ..+++++..++.|++||+..  ++.  ...+   ..    ...+..++|+|+|++++ +. .++.|++||+.    ..+.
T Consensus       190 ~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~  269 (343)
T 1ri6_A          190 QYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSK  269 (343)
T ss_dssp             SEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEE
T ss_pred             CEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEE
Confidence            87777776779999999953  432  2222   21    23467899999998775 44 57899999997    3344


Q ss_pred             eeEEeCCCCceeeEEcCCCCCEEEecc-CCCeEEEEE--CCCCcE
Q 024372          221 VKGYNMPCNTESASLEPKLGNIFIAGG-EDMWVHVFD--FHTGEQ  262 (268)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~gs-~d~~i~~wd--~~~g~~  262 (268)
                      +..+.....+..+.+++ +++++++++ .|+.|.+|+  .++|+.
T Consensus       270 ~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~v~~~d~~~g~~  313 (343)
T 1ri6_A          270 EGFQPTETQPRGFNVDH-SGKYLIAAGQKSHHISVYEIVGEQGLL  313 (343)
T ss_dssp             EEEEECSSSCCCEEECT-TSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred             eeeecCCCccceEEECC-CCCEEEEecCCCCeEEEEEEcCCCcee
Confidence            55555544566778877 577666665 689999994  446653

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.94  E-value=2.2e-23  Score=180.53  Aligned_cols=223  Identities=10%  Similarity=0.091  Sum_probs=172.4

Q ss_pred             ecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCC---CeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEE-EeeCCC
Q 024372            8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDS---SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSA-SGSADF   83 (268)
Q Consensus         8 ~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~---~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~-s~s~D~   83 (268)
                      .+..+.+|...|.+++|+|   ||++|++++.|+   +|++||+.+++.. .+..|.+.+.+++|+|++++|+ +++.|+
T Consensus       170 ~~~~l~~~~~~v~~~~~Sp---dg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g  245 (415)
T 2hqs_A          170 NQFVVHRSPQPLMSPAWSP---DGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTG  245 (415)
T ss_dssp             SCEEEEEESSCEEEEEECT---TSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTS
T ss_pred             CCEEEeCCCCcceeeEEcC---CCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCC
Confidence            4566778999999999985   999999999886   8999999999875 5777889999999999999877 777665


Q ss_pred             c--EEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeC-CC--eEEEEECCCCCCCCeEecCCcccEEEEEEeCCCC
Q 024372           84 T--AKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGF-EK--ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ  158 (268)
Q Consensus        84 ~--v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~-d~--~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~  158 (268)
                      .  |++||+.+++......+...+..++|+|+++.|++++. ++  .|.+||+.++.  ......+...+..++|+|++.
T Consensus       246 ~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~spdG~  323 (415)
T 2hqs_A          246 SLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA--PQRITWEGSQNQDADVSSDGK  323 (415)
T ss_dssp             SCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC--CEECCCSSSEEEEEEECTTSS
T ss_pred             CceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC--EEEEecCCCcccCeEECCCCC
Confidence            5  99999998887665667788999999999998888775 44  67777887543  334444556788999999988


Q ss_pred             cEEEEeeCC--CeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEE-eCCC---eEEEEeCCCceeeeEEeCC-CCce
Q 024372          159 TILSSCTDS--GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-ADGS---SVKFWDANHFGLVKGYNMP-CNTE  231 (268)
Q Consensus       159 ~~~~~~~~d--~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~~---~v~~wd~~~~~~~~~~~~~-~~~~  231 (268)
                      .++.++.++  ..|++||+.+++... +..+..+.+++|+|+|++|+. +.++   .|.+||+... ..+.+..+ ....
T Consensus       324 ~l~~~~~~~g~~~i~~~d~~~~~~~~-l~~~~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~-~~~~l~~~~~~v~  401 (415)
T 2hqs_A          324 FMVMVSSNGGQQHIAKQDLATGGVQV-LSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR-FKARLPATDGQVK  401 (415)
T ss_dssp             EEEEEEECSSCEEEEEEETTTCCEEE-CCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC-CEEECCCSSSEEE
T ss_pred             EEEEEECcCCceEEEEEECCCCCEEE-ecCCCCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC-cEEEeeCCCCCCc
Confidence            777766653  489999999988754 443347899999999998764 3333   7999998743 34444443 3456


Q ss_pred             eeEEcCC
Q 024372          232 SASLEPK  238 (268)
Q Consensus       232 ~~~~~~~  238 (268)
                      ..+++|.
T Consensus       402 ~~~~~~~  408 (415)
T 2hqs_A          402 FPAWSPY  408 (415)
T ss_dssp             EEEECCC
T ss_pred             CCccccc
Confidence            6677663

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.93  E-value=1.8e-23  Score=174.47  Aligned_cols=228  Identities=14%  Similarity=0.123  Sum_probs=177.7

Q ss_pred             cEEEEEeCCCCeEEeeCCCCCeEEEeeCcc-C-cEEEEEecCCCcEE-EEeeCCCcEEEEeCCCCCeeeeeccCC-----
Q 024372           32 FFLVSASKDSSPMLRNGETGDWIGTFEGHK-G-AVWSCCLDANALFS-ASGSADFTAKLWDALTGDEKHSFEHKH-----  103 (268)
Q Consensus        32 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~-~-~V~~~~~~~~~~~l-~s~s~D~~v~iw~~~~~~~~~~~~~~~-----  103 (268)
                      ++|++++.+++|.+||..+++.+..+.... . .+..++|+|++.++ ++++.++.|.+||+.+++....+....     
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   81 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence            479999999999999999999888886332 2 47789999999654 667778999999999988877665433     


Q ss_pred             -eEEEEEECCCCCEEEEee------------CCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeE
Q 024372          104 -IVRACAFSEDTHLLLTGG------------FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (268)
Q Consensus       104 -~v~~v~~~~~~~~l~s~~------------~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i  170 (268)
                       .+..++|+|+++.++++.            .++.|.+||+.+++.. ..... ...+..++|+|++..++++   ++.|
T Consensus        82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~-~~~~~-~~~~~~~~~s~dg~~l~~~---~~~i  156 (337)
T 1pby_B           82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRR-KAFEA-PRQITMLAWARDGSKLYGL---GRDL  156 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEE-EEEEC-CSSCCCEEECTTSSCEEEE---SSSE
T ss_pred             ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEE-EEEeC-CCCcceeEECCCCCEEEEe---CCeE
Confidence             567899999999888886            5799999998754322 22222 3356678899988776665   4789


Q ss_pred             EEEeCCCCceEEeecCCC--------------------------------------------------------------
Q 024372          171 RLWDARSGKIVQTLETKS--------------------------------------------------------------  188 (268)
Q Consensus       171 ~iwd~~~~~~~~~~~~~~--------------------------------------------------------------  188 (268)
                      .+||+++++.+..+....                                                              
T Consensus       157 ~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~  236 (337)
T 1pby_B          157 HVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREV  236 (337)
T ss_dssp             EEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEE
T ss_pred             EEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeec
Confidence            999999887765443211                                                              


Q ss_pred             -----CEEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEE
Q 024372          189 -----PVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (268)
Q Consensus       189 -----~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~  263 (268)
                           .+.+++++|+|+++.++ ++.|.+||+.+.+.+..+.....+..+.+++ +++++++++.++.|++||+++++.+
T Consensus       237 ~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~i~v~d~~~~~~~  314 (337)
T 1pby_B          237 RIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPLPHSYYSVNVST-DGSTVWLGGALGDLAAYDAETLEKK  314 (337)
T ss_dssp             EECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEECSSCCCEEEECT-TSCEEEEESBSSEEEEEETTTCCEE
T ss_pred             CCCCCceeeEEECCCCCEEEEe-CCeEEEEECCCCcCcceecCCCceeeEEECC-CCCEEEEEcCCCcEEEEECcCCcEE
Confidence                 23458999999988777 6899999999988888887766677788887 5888888888999999999999887


Q ss_pred             eec
Q 024372          264 AIT  266 (268)
Q Consensus       264 ~~~  266 (268)
                      ...
T Consensus       315 ~~~  317 (337)
T 1pby_B          315 GQV  317 (337)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            653

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.93  E-value=2.7e-23  Score=174.39  Aligned_cols=231  Identities=12%  Similarity=0.034  Sum_probs=178.6

Q ss_pred             CCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCcc-CcEEEEEecCCCcEE-EEeeCCCcEEEEeCCCCCeeeeeccC----
Q 024372           29 PDGFFLVSASKDSSPMLRNGETGDWIGTFEGHK-GAVWSCCLDANALFS-ASGSADFTAKLWDALTGDEKHSFEHK----  102 (268)
Q Consensus        29 ~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~-~~V~~~~~~~~~~~l-~s~s~D~~v~iw~~~~~~~~~~~~~~----  102 (268)
                      +++.++++++.+++|.+||..+++.+.++..+. ..+..++|+|+++++ +++..++.|.+||+.+++....+...    
T Consensus         9 ~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~   88 (349)
T 1jmx_B            9 AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPG   88 (349)
T ss_dssp             TTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTT
T ss_pred             CCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccc
Confidence            578899999999999999999999988887554 257789999999754 56667899999999988877666532    


Q ss_pred             ---CeEEEEEECCCCCEEEEeeCC------------CeEEEEECCCCCC--CCeEecCCcccEEEEEEeCCCCcEEEEee
Q 024372          103 ---HIVRACAFSEDTHLLLTGGFE------------KILRIFDLNRPDA--PPREVGNSSGSIRTVAWLHSDQTILSSCT  165 (268)
Q Consensus       103 ---~~v~~v~~~~~~~~l~s~~~d------------~~i~~~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  165 (268)
                         ..+..++|+|+++.+++++.+            +.|.+||+.+++.  .......+ ..+.+++|+|++. ++++ +
T Consensus        89 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~-l~~~-~  165 (349)
T 1jmx_B           89 EVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP-RQVYLMRAADDGS-LYVA-G  165 (349)
T ss_dssp             EEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC-SSCCCEEECTTSC-EEEE-S
T ss_pred             cccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC-CcccceeECCCCc-EEEc-c
Confidence               236788999999999998865            8999999875321  12223222 3577888999887 6553 2


Q ss_pred             CCCeEEEEeCCCCceEEeecCCC---------------------------------------------------------
Q 024372          166 DSGGVRLWDARSGKIVQTLETKS---------------------------------------------------------  188 (268)
Q Consensus       166 ~d~~i~iwd~~~~~~~~~~~~~~---------------------------------------------------------  188 (268)
                        +.|++||+++++.+..+....                                                         
T Consensus       166 --~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  243 (349)
T 1jmx_B          166 --PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTG  243 (349)
T ss_dssp             --SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTC
T ss_pred             --CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCC
Confidence              449999999998877654321                                                         


Q ss_pred             ------------CEEEEEECC-CCcEEEEeCCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEE
Q 024372          189 ------------PVTSAEVSR-DGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVF  255 (268)
Q Consensus       189 ------------~v~~~~~s~-~g~~l~~~~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~w  255 (268)
                                  .+..++++| +|+++..+ ++.|.+||+.+.+.++.+.....+..+.+++ ++++|++++.++.|++|
T Consensus       244 ~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~v~v~  321 (349)
T 1jmx_B          244 KTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLDHTYYCVAFDK-KGDKLYLGGTFNDLAVF  321 (349)
T ss_dssp             CEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEECSSCCCEEEECS-SSSCEEEESBSSEEEEE
T ss_pred             cEEecccccCCCcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEEEEcCCCCccceEECC-CCCEEEEecCCCeEEEE
Confidence                        234667789 99988777 7899999999988888887666667778887 57777777888999999


Q ss_pred             ECCCCcEEeec
Q 024372          256 DFHTGEQIAIT  266 (268)
Q Consensus       256 d~~~g~~~~~~  266 (268)
                      |.++++++...
T Consensus       322 d~~~~~~~~~~  332 (349)
T 1jmx_B          322 NPDTLEKVKNI  332 (349)
T ss_dssp             ETTTTEEEEEE
T ss_pred             eccccceeeee
Confidence            99999887653

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.93  E-value=1.5e-23  Score=171.31  Aligned_cols=236  Identities=12%  Similarity=0.079  Sum_probs=173.5

Q ss_pred             cEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC-CCeEEEeeCc-cCcEEEEEecCCCcEEEEee--CCCc
Q 024372            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-GDWIGTFEGH-KGAVWSCCLDANALFSASGS--ADFT   84 (268)
Q Consensus         9 ~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~-~~~~~~~~~h-~~~V~~~~~~~~~~~l~s~s--~D~~   84 (268)
                      +..+..|...|.+++|+|   +|++|++++ ++.+.+||..+ ++....+.+| ...|..++|+|++.++++++  .++.
T Consensus        34 ~~~~~~~~~~v~~~~~sp---dg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~  109 (297)
T 2ojh_A           34 MRVVWQTPELFEAPNWSP---DGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGK  109 (297)
T ss_dssp             EEEEEEESSCCEEEEECT---TSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSS
T ss_pred             eeeeccCCcceEeeEECC---CCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCc
Confidence            344567999999999985   899999887 78999999999 8887777666 46788999999999999888  4455


Q ss_pred             EEEEe--CCCCCeeeeeccCCeEEEEEECCCCCEEE-EeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEE
Q 024372           85 AKLWD--ALTGDEKHSFEHKHIVRACAFSEDTHLLL-TGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTIL  161 (268)
Q Consensus        85 v~iw~--~~~~~~~~~~~~~~~v~~v~~~~~~~~l~-s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  161 (268)
                      .+||.  ..++. ...+.....+..++|+|+++.++ ++..++.+++|+++...........+...+.++.|+|++..++
T Consensus       110 ~~l~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~  188 (297)
T 2ojh_A          110 SAIYLLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIY  188 (297)
T ss_dssp             CEEEEEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEE
T ss_pred             ceEEEEECCCCc-eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEE
Confidence            66654  44444 34444444588899999999777 7888999999986433333344455667899999999888777


Q ss_pred             EEeeCCCeEEEEeCC-CCceEEeecC-CCCEEEEEECCCCcEEEEe-CC-----------CeEEEEeCCCceeeeEE---
Q 024372          162 SSCTDSGGVRLWDAR-SGKIVQTLET-KSPVTSAEVSRDGRYITTA-DG-----------SSVKFWDANHFGLVKGY---  224 (268)
Q Consensus       162 ~~~~~d~~i~iwd~~-~~~~~~~~~~-~~~v~~~~~s~~g~~l~~~-~~-----------~~v~~wd~~~~~~~~~~---  224 (268)
                      +++..++.++||+++ .+..+..+.. ...+..+.|+|+|++|+.+ .+           ..|.+||+...+.....   
T Consensus       189 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~  268 (297)
T 2ojh_A          189 FNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLF  268 (297)
T ss_dssp             EEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEE
T ss_pred             EEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccC
Confidence            776667899999886 4555555543 3458889999999987643 32           46999999876543333   


Q ss_pred             eCCCCceeeEEcCCCCCEEEeccCCC
Q 024372          225 NMPCNTESASLEPKLGNIFIAGGEDM  250 (268)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~gs~d~  250 (268)
                      ........+.++| ++++|++++.|.
T Consensus       269 ~~~~~~~~~~~sp-dg~~l~~~~~~~  293 (297)
T 2ojh_A          269 GGQGTMNSPNWSP-DGDEFAYVRYFP  293 (297)
T ss_dssp             ESTTTSCSCCBCT-TSSEEEEEEECC
T ss_pred             CCCcccccceECC-CCCEEEEEEecc
Confidence            2333455667776 688888776653

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.92  E-value=2.4e-22  Score=167.90  Aligned_cols=229  Identities=9%  Similarity=0.030  Sum_probs=174.3

Q ss_pred             CCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEee-CCCcEEEEeCCCCCe-eeeeccCCeEEE
Q 024372           30 DGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS-ADFTAKLWDALTGDE-KHSFEHKHIVRA  107 (268)
Q Consensus        30 dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s-~D~~v~iw~~~~~~~-~~~~~~~~~v~~  107 (268)
                      .+..+++++.+++|.+||..+++.+..+..+...+ .++|+|++++++.++ .++.|++||..++.. ...+........
T Consensus         9 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~   87 (331)
T 3u4y_A            9 SNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMA   87 (331)
T ss_dssp             CCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCC
T ss_pred             CCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCcc
Confidence            45568888999999999999999988888776667 999999998665554 589999999998886 566554444444


Q ss_pred             -EEECCCCCEEEEeeCCC---eEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCe-EEEEeCCCCceE-
Q 024372          108 -CAFSEDTHLLLTGGFEK---ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG-VRLWDARSGKIV-  181 (268)
Q Consensus       108 -v~~~~~~~~l~s~~~d~---~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~-i~iwd~~~~~~~-  181 (268)
                       ++|+|+++.++++..++   .|.+||+.+++. ...... ......++|+|++..+++++..++. |.+|++.....+ 
T Consensus        88 ~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~-~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~  165 (331)
T 3u4y_A           88 DVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKF-ISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLF  165 (331)
T ss_dssp             CEEECTTSSEEEECCCSSSSCEEEEEETTTTEE-EEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEE
T ss_pred             ceEECCCCCEEEEecCCCCcccEEEEECCCCCe-EEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEe
Confidence             99999999998655553   899999876543 233322 3356889999998888888777778 999998754332 


Q ss_pred             ----EeecCCCCEEEEEECCCCcEE-EEe-CCCeEEEEeCCCcee---eeEEeCCCCceeeEEcCCCCCEEE-eccCCCe
Q 024372          182 ----QTLETKSPVTSAEVSRDGRYI-TTA-DGSSVKFWDANHFGL---VKGYNMPCNTESASLEPKLGNIFI-AGGEDMW  251 (268)
Q Consensus       182 ----~~~~~~~~v~~~~~s~~g~~l-~~~-~~~~v~~wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~gs~d~~  251 (268)
                          ..+.....+..++|+|+|+++ ++. .++.|++||+.+.+.   +..+.....+..+.++| +|++++ +...++.
T Consensus       166 ~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~  244 (331)
T 3u4y_A          166 DTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSR-DGSTVYVLTESTVD  244 (331)
T ss_dssp             EEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECT-TSSEEEEECSSEEE
T ss_pred             ecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECC-CCCEEEEEEcCCCE
Confidence                233444568899999999865 444 478999999988877   77777666667778887 577554 5556888


Q ss_pred             EEEEECCCCcE
Q 024372          252 VHVFDFHTGEQ  262 (268)
Q Consensus       252 i~~wd~~~g~~  262 (268)
                      |.+||.++|+.
T Consensus       245 i~~~d~~~~~~  255 (331)
T 3u4y_A          245 VFNFNQLSGTL  255 (331)
T ss_dssp             EEEEETTTTEE
T ss_pred             EEEEECCCCce
Confidence            99999998887

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.92  E-value=6.7e-22  Score=166.26  Aligned_cols=243  Identities=12%  Similarity=0.098  Sum_probs=185.3

Q ss_pred             cCCCeeeEEEecCCCCCcEEEEEeC-------CCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEE-EEeeCCCcEE
Q 024372           15 HSRPVVDLFYSPITPDGFFLVSASK-------DSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFS-ASGSADFTAK   86 (268)
Q Consensus        15 h~~~v~~~~f~~~~~dg~~l~s~s~-------d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l-~s~s~D~~v~   86 (268)
                      ....+..++|+|   +|++|+.++.       ++++.+||..+++.+..+... ..+..+++++++.++ ++...++.|.
T Consensus        39 ~~~~~~~~~~s~---dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~  114 (353)
T 3vgz_A           39 VGKGAYEMAYSQ---QENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVT  114 (353)
T ss_dssp             EESSEEEEEEET---TTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEE
T ss_pred             hccCccceEECC---CCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEE
Confidence            345677899985   8888888875       467999999999988888643 446788999999854 5666789999


Q ss_pred             EEeCCCCCeeeeeccCC----------eEEEEEECCCCCEEEEee--CCCeEEEEECCCCCCCCeEecCCcccEEEEEEe
Q 024372           87 LWDALTGDEKHSFEHKH----------IVRACAFSEDTHLLLTGG--FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWL  154 (268)
Q Consensus        87 iw~~~~~~~~~~~~~~~----------~v~~v~~~~~~~~l~s~~--~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~  154 (268)
                      +||..+++....+....          .+..+.|+|+++.+++++  .++.|.+||+.+.+. ......+...+..++|+
T Consensus       115 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~s  193 (353)
T 3vgz_A          115 AIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKL-KTAIQNTGKMSTGLALD  193 (353)
T ss_dssp             EEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEE-EEEECCCCTTCCCCEEE
T ss_pred             EEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCce-EEEecCCCCccceEEEC
Confidence            99999998877765422          267899999999777765  478899999876542 23333233446778999


Q ss_pred             CCCCcEEEEeeCCCeEEEEeCCCCceEEeecC-----CCCEEEEEECCCCcEEEE-e-CCCeEEEEeCCCceeeeEEeCC
Q 024372          155 HSDQTILSSCTDSGGVRLWDARSGKIVQTLET-----KSPVTSAEVSRDGRYITT-A-DGSSVKFWDANHFGLVKGYNMP  227 (268)
Q Consensus       155 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-----~~~v~~~~~s~~g~~l~~-~-~~~~v~~wd~~~~~~~~~~~~~  227 (268)
                      |++..++++. .++.|.+||+++++.+..+..     ...+..++++|+|+++.. . .++.|.+||+.+.+.+..+...
T Consensus       194 ~dg~~l~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~  272 (353)
T 3vgz_A          194 SEGKRLYTTN-ADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAP  272 (353)
T ss_dssp             TTTTEEEEEC-TTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECS
T ss_pred             CCCCEEEEEc-CCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcC
Confidence            9888766654 569999999999998877653     234778999999986654 3 4589999999998888877765


Q ss_pred             CCceeeEEcCCCCC-EEEeccCCCeEEEEECCCCcEEee
Q 024372          228 CNTESASLEPKLGN-IFIAGGEDMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       228 ~~~~~~~~~~~~~~-~~~~gs~d~~i~~wd~~~g~~~~~  265 (268)
                      .. ..+.+++ +++ ++++...++.|.+||..+++.+..
T Consensus       273 ~~-~~~~~s~-dg~~l~v~~~~~~~v~~~d~~~~~~~~~  309 (353)
T 3vgz_A          273 ES-LAVLFNP-ARNEAYVTHRQAGKVSVIDAKSYKVVKT  309 (353)
T ss_dssp             SC-CCEEEET-TTTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CC-ceEEECC-CCCEEEEEECCCCeEEEEECCCCeEEEE
Confidence            43 4567777 466 556666799999999999988764

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.92  E-value=3.9e-22  Score=168.02  Aligned_cols=248  Identities=11%  Similarity=0.118  Sum_probs=172.7

Q ss_pred             eecCCCeeeEEEecCCCCCcEEEEEeC---CCCeEEeeCCCCC--eEEEeeCccCcEEEEEecCCCcEEEEee-CCCcEE
Q 024372           13 HGHSRPVVDLFYSPITPDGFFLVSASK---DSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDANALFSASGS-ADFTAK   86 (268)
Q Consensus        13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~---d~~i~iw~~~~~~--~~~~~~~h~~~V~~~~~~~~~~~l~s~s-~D~~v~   86 (268)
                      ..+...+..++|+|   ||+ |++++.   ++.|.+|++.+++  .+..+..|...+..++|+|+++++++++ .++.++
T Consensus        36 ~~~~~~p~~~a~sp---dg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~  111 (347)
T 3hfq_A           36 LAATQNPTYLALSA---KDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAE  111 (347)
T ss_dssp             EEECSCCCCEEECT---TCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEE
T ss_pred             eeccCCcceEEEcc---CCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEE
Confidence            35566777899985   888 555554   6899999997775  4555566777888999999999888777 789999


Q ss_pred             EEeCCC-CCe--eeeeccC----------CeEEEEEECCCCCEEEEeeCCCeEEEEECCC-CCCCC-eE-ecCCcccEEE
Q 024372           87 LWDALT-GDE--KHSFEHK----------HIVRACAFSEDTHLLLTGGFEKILRIFDLNR-PDAPP-RE-VGNSSGSIRT  150 (268)
Q Consensus        87 iw~~~~-~~~--~~~~~~~----------~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~-~~~~~-~~-~~~~~~~v~~  150 (268)
                      +|++.. +..  ...+.+.          ..+.+++|+|+++++++...++.+++|++.. +.... .. ..........
T Consensus       112 v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~  191 (347)
T 3hfq_A          112 VMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRH  191 (347)
T ss_dssp             EEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEE
T ss_pred             EEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCce
Confidence            999963 222  2222221          2378899999999777777789999999873 22111 11 1122235677


Q ss_pred             EEEeCCCCcEEEEeeCCCeEEEEeCCC--Cce--EEeecC-------CCCEEEEEECCCCcEEE-Ee-CCCeEEEEeCCC
Q 024372          151 VAWLHSDQTILSSCTDSGGVRLWDARS--GKI--VQTLET-------KSPVTSAEVSRDGRYIT-TA-DGSSVKFWDANH  217 (268)
Q Consensus       151 ~~~~~~~~~~~~~~~~d~~i~iwd~~~--~~~--~~~~~~-------~~~v~~~~~s~~g~~l~-~~-~~~~v~~wd~~~  217 (268)
                      ++|+|++..+++++..++.|++|++..  ++.  +..+..       ...+..++|+|||++|. +. .++.|.+||+..
T Consensus       192 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~  271 (347)
T 3hfq_A          192 LVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA  271 (347)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence            999999887777777789999999874  543  222221       13478899999999763 43 478999999873


Q ss_pred             ---ceeeeEEeC-CCCceeeEEcCCCCCEEEecc-CCCeEEEE--ECCCCcEEee
Q 024372          218 ---FGLVKGYNM-PCNTESASLEPKLGNIFIAGG-EDMWVHVF--DFHTGEQIAI  265 (268)
Q Consensus       218 ---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gs-~d~~i~~w--d~~~g~~~~~  265 (268)
                         ...+..+.. ...+..++++| +|++|++++ .++.|.+|  |.++|+...+
T Consensus       272 ~g~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~d~~tg~l~~~  325 (347)
T 3hfq_A          272 DGHLTLIQQISTEGDFPRDFDLDP-TEAFVVVVNQNTDNATLYARDLTSGKLSLL  325 (347)
T ss_dssp             GGCEEEEEEEECSSSCCCEEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEE
T ss_pred             CCcEEEeEEEecCCCCcCeEEECC-CCCEEEEEEcCCCcEEEEEEeCCCCeEEec
Confidence               244444544 23456778877 688777665 45899999  5667877643

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.92  E-value=1.2e-22  Score=165.98  Aligned_cols=224  Identities=13%  Similarity=0.052  Sum_probs=163.0

Q ss_pred             EEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCC-CCeeeeecc--CCeEEEEEECC
Q 024372           36 SASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT-GDEKHSFEH--KHIVRACAFSE  112 (268)
Q Consensus        36 s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~-~~~~~~~~~--~~~v~~v~~~~  112 (268)
                      .++.|++|++||..+++.. .+..|...|.+++|+|++.++++++ ++.|++||+.+ ++.......  ...+.+++|+|
T Consensus        17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp   94 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP   94 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT
T ss_pred             CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC
Confidence            4578899999999998766 4556899999999999999998876 78999999998 776655532  35788899999


Q ss_pred             CCCEEEEee--CCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeC--CCCceEEeecCCC
Q 024372          113 DTHLLLTGG--FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA--RSGKIVQTLETKS  188 (268)
Q Consensus       113 ~~~~l~s~~--~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~--~~~~~~~~~~~~~  188 (268)
                      +++.+++++  .++..++|.++........+..+ ..+..++|+|++..++.++..++.++||++  .+++......+..
T Consensus        95 dg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  173 (297)
T 2ojh_A           95 DGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEG  173 (297)
T ss_dssp             TSSEEEEEECTTTSSCEEEEEETTCCCCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSS
T ss_pred             CCCEEEEEEeCCCCcceEEEEECCCCceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCC
Confidence            999999988  33455666543222223444333 348889999998887767777799999985  4455544444556


Q ss_pred             CEEEEEECCCCcEEEE-e-CCCeEEEEeCC-CceeeeEEeCCC-CceeeEEcCCCCCEEEeccCC-----------CeEE
Q 024372          189 PVTSAEVSRDGRYITT-A-DGSSVKFWDAN-HFGLVKGYNMPC-NTESASLEPKLGNIFIAGGED-----------MWVH  253 (268)
Q Consensus       189 ~v~~~~~s~~g~~l~~-~-~~~~v~~wd~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gs~d-----------~~i~  253 (268)
                      .+.++.|+|+|++++. + .++.+++|++. ....+..+..+. ....+.++| ++++|++++.+           ..|+
T Consensus       174 ~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~l~  252 (297)
T 2ojh_A          174 RNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSP-SGDKVVFVSYDADVFDHPRDLDVRVQ  252 (297)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECT-TSSEEEEEEEETTCCSCCSSEEEEEE
T ss_pred             ccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECC-CCCEEEEEEcCCCCCcccccCceEEE
Confidence            7999999999997654 4 47889999875 334444443322 234556666 68888887765           5699


Q ss_pred             EEECCCCcEE
Q 024372          254 VFDFHTGEQI  263 (268)
Q Consensus       254 ~wd~~~g~~~  263 (268)
                      +||+.+++..
T Consensus       253 ~~d~~~~~~~  262 (297)
T 2ojh_A          253 LMDMDGGNVE  262 (297)
T ss_dssp             EEETTSCSCE
T ss_pred             EEecCCCCce
Confidence            9999888653

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.91  E-value=8.4e-23  Score=188.56  Aligned_cols=235  Identities=10%  Similarity=-0.004  Sum_probs=176.1

Q ss_pred             CCCeeeEEEecCCCCCcEEEEEeC-CC-----CeEEeeCCCCCeEEEeeCccCc------------------------EE
Q 024372           16 SRPVVDLFYSPITPDGFFLVSASK-DS-----SPMLRNGETGDWIGTFEGHKGA------------------------VW   65 (268)
Q Consensus        16 ~~~v~~~~f~~~~~dg~~l~s~s~-d~-----~i~iw~~~~~~~~~~~~~h~~~------------------------V~   65 (268)
                      .+.|.+++|+|   ||++|++++. |+     +|.+||..+++....+..|...                        |.
T Consensus        36 ~~~~~~~~~Sp---dG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  112 (741)
T 2ecf_A           36 GPTLMKPKVAP---DGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIV  112 (741)
T ss_dssp             CCCCEEEEECT---TSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESC
T ss_pred             CCCCCCceEec---CCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcc
Confidence            44688999985   9999999998 88     8999999999887777655433                        78


Q ss_pred             EEEecCCCcEEEEeeCCCcEEEEeCCCC---CeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEec
Q 024372           66 SCCLDANALFSASGSADFTAKLWDALTG---DEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG  142 (268)
Q Consensus        66 ~~~~~~~~~~l~s~s~D~~v~iw~~~~~---~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~  142 (268)
                      .++|+||++++++++. +.|++||+.++   .......+...+..++|+|||+.|+.++ ++.|++||+.++... +...
T Consensus       113 ~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~-~~~~  189 (741)
T 2ecf_A          113 DYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQM-QLTA  189 (741)
T ss_dssp             CCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEE-ECCC
T ss_pred             eeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEE-Eecc
Confidence            8999999999998886 99999999988   5555555777899999999999999887 468999998754321 1111


Q ss_pred             CCccc----------------EEEEEEeCCCCcEEEEeeCCC--------------------------------eEEEEe
Q 024372          143 NSSGS----------------IRTVAWLHSDQTILSSCTDSG--------------------------------GVRLWD  174 (268)
Q Consensus       143 ~~~~~----------------v~~~~~~~~~~~~~~~~~~d~--------------------------------~i~iwd  174 (268)
                      .+...                +..+.|+|++..++.++.+.+                                .|++||
T Consensus       190 ~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d  269 (741)
T 2ecf_A          190 DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVIS  269 (741)
T ss_dssp             CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEEC
T ss_pred             CCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEE
Confidence            11111                367899999988777655432                                789999


Q ss_pred             CCC-CceEEeec---CCCCEEEEEECCCCcEEEEe------CCCeEEEEeCCCceeeeEEeCCC-----CceeeEEcCCC
Q 024372          175 ARS-GKIVQTLE---TKSPVTSAEVSRDGRYITTA------DGSSVKFWDANHFGLVKGYNMPC-----NTESASLEPKL  239 (268)
Q Consensus       175 ~~~-~~~~~~~~---~~~~v~~~~~s~~g~~l~~~------~~~~v~~wd~~~~~~~~~~~~~~-----~~~~~~~~~~~  239 (268)
                      +.+ ++......   +...+..++| |||++|+.+      .+..|++||+.+.+....+..+.     ......+++ +
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~sp-d  347 (741)
T 2ecf_A          270 PAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLD-D  347 (741)
T ss_dssp             SSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECT-T
T ss_pred             CCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECC-C
Confidence            998 87655442   3345889999 999987643      13579999998877665554332     123567777 5


Q ss_pred             CCEEEeccCCCeEEEEECC
Q 024372          240 GNIFIAGGEDMWVHVFDFH  258 (268)
Q Consensus       240 ~~~~~~gs~d~~i~~wd~~  258 (268)
                      |+++++++.|+.+++|.+.
T Consensus       348 g~~~~~~~~~g~~~l~~~~  366 (741)
T 2ecf_A          348 GSILWSSERTGFQHLYRID  366 (741)
T ss_dssp             SCEEEEECTTSSCEEEEEC
T ss_pred             CeEEEEecCCCccEEEEEc
Confidence            8888888889877777654

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.91  E-value=7.5e-22  Score=165.97  Aligned_cols=227  Identities=13%  Similarity=0.093  Sum_probs=177.0

Q ss_pred             CCCeeeEEEecCCCCCcEE-EEEeCCCCeEEeeCCCCCeEEEeeCccCc---------EEEEEecCCCcEEEEee--CCC
Q 024372           16 SRPVVDLFYSPITPDGFFL-VSASKDSSPMLRNGETGDWIGTFEGHKGA---------VWSCCLDANALFSASGS--ADF   83 (268)
Q Consensus        16 ~~~v~~~~f~~~~~dg~~l-~s~s~d~~i~iw~~~~~~~~~~~~~h~~~---------V~~~~~~~~~~~l~s~s--~D~   83 (268)
                      ...+.+++|+|   +|+++ ++...++.+.+||..+++.+..+..+...         +..++|+|++.+++.++  .++
T Consensus        88 ~~~~~~~~~s~---dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~  164 (353)
T 3vgz_A           88 DLKPFGATINN---TTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKES  164 (353)
T ss_dssp             SSCCCSEEEET---TTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSC
T ss_pred             CCCcceEEECC---CCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCc
Confidence            34567899985   78755 45566789999999999998888765432         68899999998766554  588


Q ss_pred             cEEEEeCCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEec---CCcccEEEEEEeCCCCc
Q 024372           84 TAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG---NSSGSIRTVAWLHSDQT  159 (268)
Q Consensus        84 ~v~iw~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~  159 (268)
                      .|.+||..+++....+. +...+..+.|+|+++.+++++.++.+.+||+.+++.......   .+...+..++|+|++..
T Consensus       165 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~  244 (353)
T 3vgz_A          165 VIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQR  244 (353)
T ss_dssp             EEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTE
T ss_pred             eEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCE
Confidence            99999999998888877 555678899999999999999999999999876543222221   13445778999999888


Q ss_pred             EEEEeeCCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEE-EEe-CCCeEEEEeCCCceeeeEEeCCCCceeeEEcC
Q 024372          160 ILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYI-TTA-DGSSVKFWDANHFGLVKGYNMPCNTESASLEP  237 (268)
Q Consensus       160 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l-~~~-~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~  237 (268)
                      +++++..++.|.+||+++++.+..+....+ ..++|+|+|+++ ++. .++.|.+||+.+.+.+..+.....+..+.+.+
T Consensus       245 l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~  323 (353)
T 3vgz_A          245 AFITDSKAAEVLVVDTRNGNILAKVAAPES-LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSA  323 (353)
T ss_dssp             EEEEESSSSEEEEEETTTCCEEEEEECSSC-CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEEEEEEECT
T ss_pred             EEEEeCCCCEEEEEECCCCcEEEEEEcCCC-ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCCCeEEEcC
Confidence            887777779999999999998887775443 579999999854 444 57899999999998888888776777788887


Q ss_pred             CCCCEEEecc
Q 024372          238 KLGNIFIAGG  247 (268)
Q Consensus       238 ~~~~~~~~gs  247 (268)
                       +|++++.+.
T Consensus       324 -dg~~l~v~~  332 (353)
T 3vgz_A          324 -DGKTLYVSV  332 (353)
T ss_dssp             -TSCEEEEEE
T ss_pred             -CCCEEEEEE
Confidence             577555443

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.89  E-value=4e-22  Score=183.45  Aligned_cols=237  Identities=11%  Similarity=-0.020  Sum_probs=170.0

Q ss_pred             CeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccC---cEEEEEecCCCcEEEEeeCC---------CcE
Q 024372           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG---AVWSCCLDANALFSASGSAD---------FTA   85 (268)
Q Consensus        18 ~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~---~V~~~~~~~~~~~l~s~s~D---------~~v   85 (268)
                      .+.+++|+|   ||+++++ +.|+++++||..+++....+.+|..   .|..++|+||++++++++.+         +.+
T Consensus        18 ~~~~~~~sp---dg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i   93 (723)
T 1xfd_A           18 HDPEAKWIS---DTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYY   93 (723)
T ss_dssp             CCCCCCBSS---SSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEE
T ss_pred             cccccEEcC---CCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeE
Confidence            356788885   8997776 7899999999999998888887765   49999999999999998765         778


Q ss_pred             EEEeCCCCCeeeeec---cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcc----------------
Q 024372           86 KLWDALTGDEKHSFE---HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSG----------------  146 (268)
Q Consensus        86 ~iw~~~~~~~~~~~~---~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~----------------  146 (268)
                      ++||+.++.......   +...+..++|+|||+.|+.++. +.|++||+.+++. .+....+..                
T Consensus        94 ~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~-~~~~~~~~~~~~~~g~~~~v~~ee~  171 (723)
T 1xfd_A           94 VLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQA-IRVVSTGKEGVIYNGLSDWLYEEEI  171 (723)
T ss_dssp             EEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCC-EEEECCCBTTTEEEEECCHHHHHTT
T ss_pred             EEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCce-EEEecCCCCCceECcccceeEEEEe
Confidence            899999887632222   2334788999999999998876 7999999876543 222222222                


Q ss_pred             --cEEEEEEeCCCCcEEEEeeCC---------------------------------CeEEEEeCCCCceEEeecC-----
Q 024372          147 --SIRTVAWLHSDQTILSSCTDS---------------------------------GGVRLWDARSGKIVQTLET-----  186 (268)
Q Consensus       147 --~v~~~~~~~~~~~~~~~~~~d---------------------------------~~i~iwd~~~~~~~~~~~~-----  186 (268)
                        .+..++|+|++..++.++.++                                 ..|++||+.+++....+..     
T Consensus       172 ~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~  251 (723)
T 1xfd_A          172 LKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPR  251 (723)
T ss_dssp             SSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGG
T ss_pred             ccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCC
Confidence              226899999988776665432                                 2799999999886555543     


Q ss_pred             --CCCEEEEEECCCCcEEEEe-C----CCeEEEEeCCCceeeeEEeCC-CCc-----eeeEEcCCCCCEEEe--ccCCC-
Q 024372          187 --KSPVTSAEVSRDGRYITTA-D----GSSVKFWDANHFGLVKGYNMP-CNT-----ESASLEPKLGNIFIA--GGEDM-  250 (268)
Q Consensus       187 --~~~v~~~~~s~~g~~l~~~-~----~~~v~~wd~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~--gs~d~-  250 (268)
                        ...+..++|+|||++++.. .    +..|++||+.+.++...+... ...     ....++| +|+.|+.  +..|+ 
T Consensus       252 ~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~  330 (723)
T 1xfd_A          252 MREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSK-DGRKFFFIRAIPQGG  330 (723)
T ss_dssp             GSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECT-TSCSEEEEEEECCSS
T ss_pred             CccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcC-CCCeEEEEEecccCC
Confidence              2357899999999988543 2    247999999887765554321 111     2567777 5765553  44566 


Q ss_pred             -----eEEEEE-CCCCc
Q 024372          251 -----WVHVFD-FHTGE  261 (268)
Q Consensus       251 -----~i~~wd-~~~g~  261 (268)
                           .|++|| ..+++
T Consensus       331 ~~~~~~l~~~d~~~~~~  347 (723)
T 1xfd_A          331 RGKFYHITVSSSQPNSS  347 (723)
T ss_dssp             SSCEEEEEEECSSCCSS
T ss_pred             CcceeEEEEEeccCCCC
Confidence                 577788 34444

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.89  E-value=5.4e-22  Score=183.16  Aligned_cols=236  Identities=11%  Similarity=0.068  Sum_probs=169.1

Q ss_pred             CeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC--eEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCe
Q 024372           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE   95 (268)
Q Consensus        18 ~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~--~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~   95 (268)
                      .|.+++|+|   ||++|++++. +++.+||+.+++  .+..+..|...+..++|+|||++++.++ ++.|++||+.++..
T Consensus       110 ~v~~~~~Sp---Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~  184 (741)
T 2ecf_A          110 GIVDYQWSP---DAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQ  184 (741)
T ss_dssp             ESCCCEECT---TSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEE
T ss_pred             CcceeEECC---CCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCE
Confidence            378999985   9999999987 999999999883  3446777888999999999999999887 46999999988776


Q ss_pred             eeeeccC-Ce----------------EEEEEECCCCCEEEEeeCCC---------------------------------e
Q 024372           96 KHSFEHK-HI----------------VRACAFSEDTHLLLTGGFEK---------------------------------I  125 (268)
Q Consensus        96 ~~~~~~~-~~----------------v~~v~~~~~~~~l~s~~~d~---------------------------------~  125 (268)
                      ....... ..                +..+.|+||++.|++++.|+                                 .
T Consensus       185 ~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~  264 (741)
T 2ecf_A          185 MQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVK  264 (741)
T ss_dssp             EECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEE
T ss_pred             EEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeE
Confidence            5543322 21                46799999999999987765                                 7


Q ss_pred             EEEEECCC-CCCCCeEec-CCcccEEEEEEeCCCCcEEEEee----CCCeEEEEeCCCCceEEeecCCC-----CEEEEE
Q 024372          126 LRIFDLNR-PDAPPREVG-NSSGSIRTVAWLHSDQTILSSCT----DSGGVRLWDARSGKIVQTLETKS-----PVTSAE  194 (268)
Q Consensus       126 i~~~d~~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~----~d~~i~iwd~~~~~~~~~~~~~~-----~v~~~~  194 (268)
                      |.+||+.+ ++....... .+...+..++| |++..+++++.    .+..|++||++++++...+..+.     .+..++
T Consensus       265 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~  343 (741)
T 2ecf_A          265 LGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLR  343 (741)
T ss_dssp             EEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCE
T ss_pred             EEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceE
Confidence            88889876 542211111 35667899999 98887776654    24689999999998876664322     345789


Q ss_pred             ECCCCcEEEEe-CCCeEEEEeCC-CceeeeEEeCCCC-ceee-EEcCCCCCEEE-eccCCC--eEEEEECCC-Cc
Q 024372          195 VSRDGRYITTA-DGSSVKFWDAN-HFGLVKGYNMPCN-TESA-SLEPKLGNIFI-AGGEDM--WVHVFDFHT-GE  261 (268)
Q Consensus       195 ~s~~g~~l~~~-~~~~v~~wd~~-~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~-~gs~d~--~i~~wd~~~-g~  261 (268)
                      |+|||++++++ .++.+++|.+. ..+ ...+..... ...+ .+++ +++.++ +++.|+  .+++|++.. |+
T Consensus       344 ~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~-dg~~l~~~~~~~~~~~~~l~~~~~~g~  416 (741)
T 2ecf_A          344 FLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDE-KAGLAYFRAGIESARESQIYAVPLQGG  416 (741)
T ss_dssp             ECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEET-TTTEEEEEECSSCTTCBEEEEEETTCC
T ss_pred             ECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeC-CCCEEEEEEeCCCCceEEEEEEEcCCC
Confidence            99999977665 46767777654 233 444433322 3344 3666 576554 566665  899998864 44

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.89  E-value=1.8e-19  Score=152.57  Aligned_cols=245  Identities=14%  Similarity=0.108  Sum_probs=166.8

Q ss_pred             cCCCeeeEEEecCCCCCcEEEEEeCC----CCeEEeeCCC--CC--eEEEeeCccCcEEEEEecCCCcEEEEee-CCCcE
Q 024372           15 HSRPVVDLFYSPITPDGFFLVSASKD----SSPMLRNGET--GD--WIGTFEGHKGAVWSCCLDANALFSASGS-ADFTA   85 (268)
Q Consensus        15 h~~~v~~~~f~~~~~dg~~l~s~s~d----~~i~iw~~~~--~~--~~~~~~~h~~~V~~~~~~~~~~~l~s~s-~D~~v   85 (268)
                      |......++|+|   ||++|++++.+    +.+.+|++..  ++  .+..+..+......+++  ++.+++.++ .++.+
T Consensus        48 ~~~~p~~l~~sp---dg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v  122 (361)
T 3scy_A           48 EVANPSYLIPSA---DGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSI  122 (361)
T ss_dssp             ECSCCCSEEECT---TSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEE
T ss_pred             cCCCCceEEECC---CCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEE
Confidence            667777899985   99999999986    7899997654  54  34445545556777777  677665555 68999


Q ss_pred             EEEeCCCCCeeeee----cc-----------CCeEEEEEECCCCCEEEEee-CCCeEEEEECCCCCC----C-C------
Q 024372           86 KLWDALTGDEKHSF----EH-----------KHIVRACAFSEDTHLLLTGG-FEKILRIFDLNRPDA----P-P------  138 (268)
Q Consensus        86 ~iw~~~~~~~~~~~----~~-----------~~~v~~v~~~~~~~~l~s~~-~d~~i~~~d~~~~~~----~-~------  138 (268)
                      .+|++.........    .+           ...+.+++|+|+++.+++++ .++.+++|++.....    . .      
T Consensus       123 ~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~  202 (361)
T 3scy_A          123 TVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTP  202 (361)
T ss_dssp             EEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEE
T ss_pred             EEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccc
Confidence            99999754332211    11           12357899999999665544 588999999875432    1 1      


Q ss_pred             -eEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCce--EEeecC----CCCEEEEEECCCCcEEEE-eC--CC
Q 024372          139 -REVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI--VQTLET----KSPVTSAEVSRDGRYITT-AD--GS  208 (268)
Q Consensus       139 -~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~--~~~~~~----~~~v~~~~~s~~g~~l~~-~~--~~  208 (268)
                       ............++|+|++..+++++..++.|.+||+++++.  +..+..    ......++|+|||++|.. ..  ++
T Consensus       203 ~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~  282 (361)
T 3scy_A          203 EAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKAD  282 (361)
T ss_dssp             EEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSC
T ss_pred             cceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCC
Confidence             112233345678999999887777776679999999987754  333321    234679999999998754 43  47


Q ss_pred             eEEEEeCC--Cce--eeeEEeCCCCceeeEEcCCCCCEEEecc-CCCeEEEE--ECCCCcEEee
Q 024372          209 SVKFWDAN--HFG--LVKGYNMPCNTESASLEPKLGNIFIAGG-EDMWVHVF--DFHTGEQIAI  265 (268)
Q Consensus       209 ~v~~wd~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~gs-~d~~i~~w--d~~~g~~~~~  265 (268)
                      .|.+|++.  ...  .+..+.....+..++++| +|++|++++ .++.|.+|  |.++|+...+
T Consensus       283 ~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~  345 (361)
T 3scy_A          283 GVAIFKVDETNGTLTKVGYQLTGIHPRNFIITP-NGKYLLVACRDTNVIQIFERDQATGLLTDI  345 (361)
T ss_dssp             EEEEEEECTTTCCEEEEEEEECSSCCCEEEECT-TSCEEEEEETTTTEEEEEEECTTTCCEEEC
T ss_pred             EEEEEEEcCCCCcEEEeeEecCCCCCceEEECC-CCCEEEEEECCCCCEEEEEEECCCCcEeec
Confidence            89999985  233  344444433456777887 688777665 67889996  5557776544

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.89  E-value=5.2e-21  Score=175.73  Aligned_cols=245  Identities=13%  Similarity=0.133  Sum_probs=173.5

Q ss_pred             EEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC-----CCeEEEeeCccCc--------------EEEEEec
Q 024372           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-----GDWIGTFEGHKGA--------------VWSCCLD   70 (268)
Q Consensus        10 ~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~-----~~~~~~~~~h~~~--------------V~~~~~~   70 (268)
                      ..+..|...+.+++|+|   ||++||. +.|++|.+|++.+     ++.......+...              +..++|+
T Consensus       114 ~~l~~~~~~~~~~~~Sp---dG~~la~-~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~S  189 (706)
T 2z3z_A          114 TYLFDTNEETASLDFSP---VGDRVAY-VRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWS  189 (706)
T ss_dssp             EEEECCTTCCTTCEECT---TSSEEEE-EETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEEC
T ss_pred             EEccCCcccccCCcCCC---CCCEEEE-EECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEEC
Confidence            34456778899999985   9999998 4789999999998     8766555444443              4789999


Q ss_pred             CCCcEEEEee---------------------------------CCCcEEEEeCCCCCeeeee---ccCCeEEEEEECCCC
Q 024372           71 ANALFSASGS---------------------------------ADFTAKLWDALTGDEKHSF---EHKHIVRACAFSEDT  114 (268)
Q Consensus        71 ~~~~~l~s~s---------------------------------~D~~v~iw~~~~~~~~~~~---~~~~~v~~v~~~~~~  114 (268)
                      ||+++|++++                                 .+..|++||+.++......   .+...+..++|+||+
T Consensus       190 pDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg  269 (706)
T 2z3z_A          190 PKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDE  269 (706)
T ss_dssp             TTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTS
T ss_pred             CCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCC
Confidence            9999999887                                 4467999999888765443   355679999999999


Q ss_pred             CEEEEeeCCC-----eEEEEECCCCCCCCeEe-cCCcc---cEEEEEEeC--CCCcEEEEeeCCCeEEEEeCC-CCceEE
Q 024372          115 HLLLTGGFEK-----ILRIFDLNRPDAPPREV-GNSSG---SIRTVAWLH--SDQTILSSCTDSGGVRLWDAR-SGKIVQ  182 (268)
Q Consensus       115 ~~l~s~~~d~-----~i~~~d~~~~~~~~~~~-~~~~~---~v~~~~~~~--~~~~~~~~~~~d~~i~iwd~~-~~~~~~  182 (268)
                      +.|++++.++     .|.+||+.+++...... .....   .+..+.|+|  ++. +++++..++.++||++. ++..+.
T Consensus       270 ~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~-~l~~~~~~g~~~l~~~~~~~~~~~  348 (706)
T 2z3z_A          270 NILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQ-FIWQSRRDGWNHLYLYDTTGRLIR  348 (706)
T ss_dssp             SEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSE-EEEEECTTSSCEEEEEETTSCEEE
T ss_pred             CEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCE-EEEEEccCCccEEEEEECCCCEEE
Confidence            9999887775     89999987652211111 11221   235678888  765 56666777899999876 566666


Q ss_pred             eecC-CCCEEE-EEECCCCcEEE-EeC-CC----eEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEecc-CC---C
Q 024372          183 TLET-KSPVTS-AEVSRDGRYIT-TAD-GS----SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGG-ED---M  250 (268)
Q Consensus       183 ~~~~-~~~v~~-~~~s~~g~~l~-~~~-~~----~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs-~d---~  250 (268)
                      .+.. ...+.. ++|+|+|+.|+ ++. ++    .|..||+.... .+.+........+.++| +|++++..+ .+   .
T Consensus       349 ~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~sp-dg~~l~~~~~~~~~p~  426 (706)
T 2z3z_A          349 QVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLTPESGMHRTQLSP-DGSAIIDIFQSPTVPR  426 (706)
T ss_dssp             ECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESCCSSSEEEEEECT-TSSEEEEEEECSSCSC
T ss_pred             ecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceeccCCCceEEEEECC-CCCEEEEEecCCCCCc
Confidence            6654 344665 79999998764 333 33    66777776654 33333334455677777 688777653 33   5


Q ss_pred             eEEEEECCCCc
Q 024372          251 WVHVFDFHTGE  261 (268)
Q Consensus       251 ~i~~wd~~~g~  261 (268)
                      .|++||+.+++
T Consensus       427 ~i~l~d~~~~~  437 (706)
T 2z3z_A          427 KVTVTNIGKGS  437 (706)
T ss_dssp             EEEEEESSSCE
T ss_pred             EEEEEECCCCe
Confidence            69999998876

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.88  E-value=3e-21  Score=173.73  Aligned_cols=235  Identities=13%  Similarity=0.063  Sum_probs=162.2

Q ss_pred             cCCCeeeEEEecCCCCCcEEEEEeC-CCCeEEeeCCCCCeEEEeeCcc-CcEEEEEecCCCcEEEEeeC---CCcEEEEe
Q 024372           15 HSRPVVDLFYSPITPDGFFLVSASK-DSSPMLRNGETGDWIGTFEGHK-GAVWSCCLDANALFSASGSA---DFTAKLWD   89 (268)
Q Consensus        15 h~~~v~~~~f~~~~~dg~~l~s~s~-d~~i~iw~~~~~~~~~~~~~h~-~~V~~~~~~~~~~~l~s~s~---D~~v~iw~   89 (268)
                      +..+|.+++|+|   ||++||.++. |++++||++..++.. .+..|. ..|..++|+|| +++++++.   +...++|.
T Consensus        20 ~~~~~~~~~~~~---DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~   94 (582)
T 3o4h_A           20 IAVEKYSLQGVV---DGDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFK   94 (582)
T ss_dssp             HHSCEEEEEEEE---TTTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEE
T ss_pred             hccchheeecCC---CCCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC-eEEEEeccCCCCcceEEEE
Confidence            356899999996   9999999887 999999998666554 454454 68999999999 77777665   56667765


Q ss_pred             CCC--CCeeeeeccCCeEEEEEECCCCC--EEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEee
Q 024372           90 ALT--GDEKHSFEHKHIVRACAFSEDTH--LLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT  165 (268)
Q Consensus        90 ~~~--~~~~~~~~~~~~v~~v~~~~~~~--~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  165 (268)
                      +..  ......+.........+|+|+++  .+++++.++. .+||+.+++.  .....+..  ..++|+|++..++.++.
T Consensus        95 ~~~~~~g~~~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~-~l~d~~~g~~--~~l~~~~~--~~~~~spDG~~la~~~~  169 (582)
T 3o4h_A           95 VNTSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRV-ALYALDGGGL--RELARLPG--FGFVSDIRGDLIAGLGF  169 (582)
T ss_dssp             EETTSTTCCEECTTSCSBEEEEEEECSSCEEEEEECSSCE-EEEEEETTEE--EEEEEESS--CEEEEEEETTEEEEEEE
T ss_pred             EeccCCCccccccCCCCceeeeeCCCCCeEEEEecCCCCc-eEEEccCCcE--EEeecCCC--ceEEECCCCCEEEEEEE
Confidence            533  22222333333344567777764  4555555554 5999876532  22222222  67889998877664443


Q ss_pred             CC---CeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEe-CCC--eEEEEeCCCceeeeEEeCCC-CceeeE----
Q 024372          166 DS---GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-DGS--SVKFWDANHFGLVKGYNMPC-NTESAS----  234 (268)
Q Consensus       166 ~d---~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~--~v~~wd~~~~~~~~~~~~~~-~~~~~~----  234 (268)
                      +.   +.|++||+.+++......+...+..++|||||++|+++ .++  .|++||+...+.. ...... ......    
T Consensus       170 ~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~  248 (582)
T 3o4h_A          170 FGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAI  248 (582)
T ss_dssp             EETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEE
T ss_pred             cCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccc
Confidence            21   67999999998876544455668999999999998764 456  7999999877655 333222 223344    


Q ss_pred             ----EcCCCCCEEEeccCCCeEEEEECCCCcEE
Q 024372          235 ----LEPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (268)
Q Consensus       235 ----~~~~~~~~~~~gs~d~~i~~wd~~~g~~~  263 (268)
                          ++| +|.++++++.|+.+++|++  |+.+
T Consensus       249 ~~~~~sp-dg~~~~~~~~~g~~~l~~~--g~~~  278 (582)
T 3o4h_A          249 TWLGYLP-DGRLAVVARREGRSAVFID--GERV  278 (582)
T ss_dssp             EEEEECT-TSCEEEEEEETTEEEEEET--TEEE
T ss_pred             cceeEcC-CCcEEEEEEcCCcEEEEEE--CCee
Confidence                777 5788899999999999998  7655

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.88  E-value=7.7e-22  Score=171.77  Aligned_cols=196  Identities=9%  Similarity=-0.004  Sum_probs=145.0

Q ss_pred             cCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC-----------CCeE-----EEeeCccCcEEEEEecCCCcEEE-
Q 024372           15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-----------GDWI-----GTFEGHKGAVWSCCLDANALFSA-   77 (268)
Q Consensus        15 h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~-----------~~~~-----~~~~~h~~~V~~~~~~~~~~~l~-   77 (268)
                      +...++.++++|   ++.++++++.|+ +++|+...           ....     ..+ .|.+.|.+++|+|++.+|+ 
T Consensus        35 ~~~~~n~lavs~---~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~spdg~~lav  109 (434)
T 2oit_A           35 PKERSSLLAVSN---KYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV-PMKFPIHHLALSCDNLTLSA  109 (434)
T ss_dssp             CCSCCBCEEEET---TTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEE-CCSSCEEEEEECTTSCEEEE
T ss_pred             CCCCccEEEEec---CCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccc-cCCCcccEEEEcCCCCEEEE
Confidence            344688899985   677899999998 88875321           1111     112 3567899999999999998 


Q ss_pred             ---EeeCCCcEEEEeCCCC--------Ce---eeee-ccCCeEEEEEECCC-CCEEEEeeCCCeEEEEECCCCCCCCeEe
Q 024372           78 ---SGSADFTAKLWDALTG--------DE---KHSF-EHKHIVRACAFSED-THLLLTGGFEKILRIFDLNRPDAPPREV  141 (268)
Q Consensus        78 ---s~s~D~~v~iw~~~~~--------~~---~~~~-~~~~~v~~v~~~~~-~~~l~s~~~d~~i~~~d~~~~~~~~~~~  141 (268)
                         +|+.|++|++||+.+.        +.   ...+ .|...|.+++|+|+ +++|++++.|++|++||++++.. ....
T Consensus       110 ~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~-~~~~  188 (434)
T 2oit_A          110 CMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK-VCAT  188 (434)
T ss_dssp             EEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE-EEEE
T ss_pred             EEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc-eeec
Confidence               8999999999998654        11   1222 37889999999997 88999999999999999986532 2223


Q ss_pred             cCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCC--------CCEEEEEECCCCcEEEEe--CC----
Q 024372          142 GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK--------SPVTSAEVSRDGRYITTA--DG----  207 (268)
Q Consensus       142 ~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~--------~~v~~~~~s~~g~~l~~~--~~----  207 (268)
                      ..|...+.+++|+|++.. +++++.||.|++||++ ++....+..+        ..+.++.|++++.++++.  .+    
T Consensus       189 ~~~~~~v~~v~wspdg~~-lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~  266 (434)
T 2oit_A          189 LPSTVAVTSVCWSPKGKQ-LAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLE  266 (434)
T ss_dssp             ECGGGCEEEEEECTTSSC-EEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSS
T ss_pred             cCCCCceeEEEEcCCCCE-EEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccC
Confidence            346778999999998665 5566678999999999 6655554321        268899999999888542  22    


Q ss_pred             --CeEEEEeCCCc
Q 024372          208 --SSVKFWDANHF  218 (268)
Q Consensus       208 --~~v~~wd~~~~  218 (268)
                        ..+++||+++.
T Consensus       267 ~~~~v~i~~l~~~  279 (434)
T 2oit_A          267 TSPDVVMALLPKK  279 (434)
T ss_dssp             SCCEEEEEECCCT
T ss_pred             CCCceEEEEeccC
Confidence              24899999754

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.87  E-value=8.7e-21  Score=174.58  Aligned_cols=243  Identities=15%  Similarity=0.098  Sum_probs=165.5

Q ss_pred             EEeeecCC---CeeeEEEecCCCCCcEEEEEeCC---------CCeEEeeCCCCCeEEEe---eCccCcEEEEEecCCCc
Q 024372           10 LVCHGHSR---PVVDLFYSPITPDGFFLVSASKD---------SSPMLRNGETGDWIGTF---EGHKGAVWSCCLDANAL   74 (268)
Q Consensus        10 ~~~~~h~~---~v~~~~f~~~~~dg~~l~s~s~d---------~~i~iw~~~~~~~~~~~---~~h~~~V~~~~~~~~~~   74 (268)
                      ..+.+|..   .|.+++|+|   ||++|++++.+         +.+.+||+.+++. ..+   .+|...+..++|+|||+
T Consensus        51 ~~~~~~~~~~~~v~~~~~Sp---Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~  126 (723)
T 1xfd_A           51 VLIEGKKIESLRAIRYEISP---DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ  126 (723)
T ss_dssp             EEECTTTTTTTTCSEEEECT---TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT
T ss_pred             EEeccccccccccceEEECC---CCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC
Confidence            33445554   489999985   99999999886         5666999999876 334   34555688999999999


Q ss_pred             EEEEeeCCCcEEEEeCCCCCeeeeecc-CCe------------------EEEEEECCCCCEEEEeeCCC-----------
Q 024372           75 FSASGSADFTAKLWDALTGDEKHSFEH-KHI------------------VRACAFSEDTHLLLTGGFEK-----------  124 (268)
Q Consensus        75 ~l~s~s~D~~v~iw~~~~~~~~~~~~~-~~~------------------v~~v~~~~~~~~l~s~~~d~-----------  124 (268)
                      ++|.++. +.|++||+.+++....... ...                  +..++|+||++.|++++.++           
T Consensus       127 ~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~  205 (723)
T 1xfd_A          127 QLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTY  205 (723)
T ss_dssp             CEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCC
T ss_pred             EEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeecc
Confidence            9998876 7999999988876554432 222                  26899999999999887553           


Q ss_pred             -----------------------eEEEEECCCCCCCCeEecC------CcccEEEEEEeCCCCcEEEEeeC---CCeEEE
Q 024372          125 -----------------------ILRIFDLNRPDAPPREVGN------SSGSIRTVAWLHSDQTILSSCTD---SGGVRL  172 (268)
Q Consensus       125 -----------------------~i~~~d~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~---d~~i~i  172 (268)
                                             .+++||+.+++.. ..+..      +...+..++|+|++..+++....   +..|++
T Consensus       206 ~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~-~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~  284 (723)
T 1xfd_A          206 TGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHD-LEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTL  284 (723)
T ss_dssp             SSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCC-EECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEE
T ss_pred             CCcCCCcceeccCCCCCCCCCeeEEEEEECCCCcee-EEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEE
Confidence                                   7999998765432 22222      25678899999988755444332   257999


Q ss_pred             EeCCCCceEEeecC--CCCE----EEEEECCCCcEEEE--e-CCC------eEEEEe-CCCce--eeeEEeC-CCCcee-
Q 024372          173 WDARSGKIVQTLET--KSPV----TSAEVSRDGRYITT--A-DGS------SVKFWD-ANHFG--LVKGYNM-PCNTES-  232 (268)
Q Consensus       173 wd~~~~~~~~~~~~--~~~v----~~~~~s~~g~~l~~--~-~~~------~v~~wd-~~~~~--~~~~~~~-~~~~~~-  232 (268)
                      ||+.++++...+..  ...+    ..++|+|||+.++.  + .++      .|.+|| .....  +.+.+.. ...... 
T Consensus       285 ~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~  364 (723)
T 1xfd_A          285 CDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKI  364 (723)
T ss_dssp             EETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEE
T ss_pred             EeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEee
Confidence            99999987765532  2222    37899999985542  3 455      466777 33333  0333322 222223 


Q ss_pred             eEEcCCCCCEEEecc-CC--CeEEEEECCC
Q 024372          233 ASLEPKLGNIFIAGG-ED--MWVHVFDFHT  259 (268)
Q Consensus       233 ~~~~~~~~~~~~~gs-~d--~~i~~wd~~~  259 (268)
                      ..+++ +|+.|+..+ .+  +.+++|++..
T Consensus       365 ~~~sp-dg~~l~~~~~~~~~~~~~l~~~~~  393 (723)
T 1xfd_A          365 LAYDE-KGNKIYFLSTEDLPRRRQLYSANT  393 (723)
T ss_dssp             EEEET-TTTEEEEEESSSCTTCCEEEEECS
T ss_pred             eEEcC-CCCEEEEEEcCCCCcceEEEEEeC
Confidence            46676 687776544 44  7899999764

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.87  E-value=1.5e-19  Score=153.74  Aligned_cols=241  Identities=9%  Similarity=0.076  Sum_probs=165.4

Q ss_pred             cCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCC-CCCeEEEeeCcc--CcEEEEEecCCCcE--EEEee---------
Q 024372           15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGE-TGDWIGTFEGHK--GAVWSCCLDANALF--SASGS---------   80 (268)
Q Consensus        15 h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~-~~~~~~~~~~h~--~~V~~~~~~~~~~~--l~s~s---------   80 (268)
                      +...+..++|+|   ||++|++++.+ ++.+|++. ++++..... |.  +....++|+|++++  +++++         
T Consensus        38 ~~~~~~~~a~sp---dg~~l~~~~~~-~v~~~~~~~~g~~~~~~~-~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~  112 (365)
T 1jof_A           38 QDEPISWMTFDH---ERKNIYGAAMK-KWSSFAVKSPTEIVHEAS-HPIGGHPRANDADTNTRAIFLLAAKQPPYAVYAN  112 (365)
T ss_dssp             TTCCCSEEEECT---TSSEEEEEEBT-EEEEEEEEETTEEEEEEE-EECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEE
T ss_pred             CCCCCcEEEECC---CCCEEEEEccc-eEEEEEECCCCCEEEeeE-eecCCCCccEEECCCCCEEEEEEecCCcceeccc
Confidence            344677899985   99999999998 89999987 787654332 21  23445789999984  55553         


Q ss_pred             ----CCCcEEEEeCCC-CCeeeeec-----cCCeEEEEEECCCCCEEEEee-CCCeEEEEECC-CCCCCC-eEec--CCc
Q 024372           81 ----ADFTAKLWDALT-GDEKHSFE-----HKHIVRACAFSEDTHLLLTGG-FEKILRIFDLN-RPDAPP-REVG--NSS  145 (268)
Q Consensus        81 ----~D~~v~iw~~~~-~~~~~~~~-----~~~~v~~v~~~~~~~~l~s~~-~d~~i~~~d~~-~~~~~~-~~~~--~~~  145 (268)
                          .++++++|++.. +.....+.     +...+..++|+|+++.++++. .++.|++||+. +++... ....  .+.
T Consensus       113 ~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g  192 (365)
T 1jof_A          113 PFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPG  192 (365)
T ss_dssp             EESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTT
T ss_pred             eeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCC
Confidence                689999999973 55433332     345788999999999888765 46899999987 443211 1121  124


Q ss_pred             ccEEEEEEeCCCCcEEEEeeCCCeEEEEeCC--CCceE---E---eecCC----C-------CEEEEE-ECCCCcEEEEe
Q 024372          146 GSIRTVAWLHSDQTILSSCTDSGGVRLWDAR--SGKIV---Q---TLETK----S-------PVTSAE-VSRDGRYITTA  205 (268)
Q Consensus       146 ~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~--~~~~~---~---~~~~~----~-------~v~~~~-~s~~g~~l~~~  205 (268)
                      .....++|+|++..+++++..++.|.+|++.  +++..   +   .+...    .       .+..++ |+|||++|.++
T Consensus       193 ~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~  272 (365)
T 1jof_A          193 DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFAS  272 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred             CCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEE
Confidence            4578899999988777776667899999764  56542   1   22211    2       478899 99999987543


Q ss_pred             C--CC-----eEEEEeCC-Cceeee---EEe-CCCCceeeEEcCC--CCCEEEeccC-CCeEEEEECCCC
Q 024372          206 D--GS-----SVKFWDAN-HFGLVK---GYN-MPCNTESASLEPK--LGNIFIAGGE-DMWVHVFDFHTG  260 (268)
Q Consensus       206 ~--~~-----~v~~wd~~-~~~~~~---~~~-~~~~~~~~~~~~~--~~~~~~~gs~-d~~i~~wd~~~g  260 (268)
                      .  ++     .|.+|++. +++...   ... .......++++|.  +|+++++++. ++.|.+|++...
T Consensus       273 ~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          273 SRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            2  23     89999986 444332   122 2234556677774  5888888776 589999998755

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.87  E-value=1.6e-20  Score=172.47  Aligned_cols=237  Identities=11%  Similarity=0.071  Sum_probs=164.8

Q ss_pred             CCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCC----
Q 024372           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT----   92 (268)
Q Consensus        17 ~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~----   92 (268)
                      ..|.+++|+|   |+ +++.+ .|+++.+||..+++... +..|...+..++|+||+++++++ .|+.|++|++.+    
T Consensus        82 ~~v~~~~~sp---d~-~~~~~-~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~  154 (706)
T 2z3z_A           82 FPSFRTLDAG---RG-LVVLF-TQGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEG  154 (706)
T ss_dssp             CCCEEEEETT---TT-EEEEE-ETTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSC
T ss_pred             cCceeEEECC---CC-eEEEE-ECCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCccccc
Confidence            5699999985   74 44444 46999999999887654 45567788899999999999884 689999999988    


Q ss_pred             -CCeeeeeccC-Ce--------------EEEEEECCCCCEEEEee---------------------------------CC
Q 024372           93 -GDEKHSFEHK-HI--------------VRACAFSEDTHLLLTGG---------------------------------FE  123 (268)
Q Consensus        93 -~~~~~~~~~~-~~--------------v~~v~~~~~~~~l~s~~---------------------------------~d  123 (268)
                       ++........ ..              +..+.|+||++.|++++                                 .+
T Consensus       155 ~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~  234 (706)
T 2z3z_A          155 MSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHH  234 (706)
T ss_dssp             CCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCE
T ss_pred             CCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCe
Confidence             7665433322 21              47899999999999987                                 44


Q ss_pred             CeEEEEECCCCCCCCeEe-cCCcccEEEEEEeCCCCcEEEEeeCC----CeEEEEeCCCCceEEeec---CCC---CEEE
Q 024372          124 KILRIFDLNRPDAPPREV-GNSSGSIRTVAWLHSDQTILSSCTDS----GGVRLWDARSGKIVQTLE---TKS---PVTS  192 (268)
Q Consensus       124 ~~i~~~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~d----~~i~iwd~~~~~~~~~~~---~~~---~v~~  192 (268)
                      ..|.+||+.+++...... ..+...+..++|+|++..+++++.+.    ..|++||+++++....+.   ...   .+..
T Consensus       235 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~  314 (706)
T 2z3z_A          235 VTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHP  314 (706)
T ss_dssp             EEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSC
T ss_pred             eEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCC
Confidence            679999987653211111 13456789999999888776655432    289999999984433321   111   2357


Q ss_pred             EEECC--CCcEEEEe-CCCeEEEEeCC-CceeeeEEeCCCC-cee-eEEcCCCCCEEE-eccCCC----eEEEEECCCCc
Q 024372          193 AEVSR--DGRYITTA-DGSSVKFWDAN-HFGLVKGYNMPCN-TES-ASLEPKLGNIFI-AGGEDM----WVHVFDFHTGE  261 (268)
Q Consensus       193 ~~~s~--~g~~l~~~-~~~~v~~wd~~-~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~-~gs~d~----~i~~wd~~~g~  261 (268)
                      +.|+|  ||++++++ .++.+++|++. ..+.++.+..... ... ..+++ +++.|+ +++.++    .|+.||..+++
T Consensus       315 ~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~~~  393 (706)
T 2z3z_A          315 LTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDP-KGTRLYFESTEASPLERHFYCIDIKGGK  393 (706)
T ss_dssp             CEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECT-TSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred             ceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcC-CCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence            89999  99988765 56788888775 4455555543332 223 46666 576655 455554    78888887765

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.87  E-value=1.8e-19  Score=150.51  Aligned_cols=217  Identities=9%  Similarity=0.078  Sum_probs=151.0

Q ss_pred             CCeeeEEEecCCCCCcEEEEEeC-CCCeEEeeCC---CCCeEEEeeCccCcEEEEEecCCCcEEEEee-CCCcEEEEeCC
Q 024372           17 RPVVDLFYSPITPDGFFLVSASK-DSSPMLRNGE---TGDWIGTFEGHKGAVWSCCLDANALFSASGS-ADFTAKLWDAL   91 (268)
Q Consensus        17 ~~v~~~~f~~~~~dg~~l~s~s~-d~~i~iw~~~---~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s-~D~~v~iw~~~   91 (268)
                      ..+..++|+|   +|++|++++. ++.+.+|+..   +++.+..+..+ ..+..++|+|++.++++++ .++.|++||+.
T Consensus        84 ~~~~~~~~s~---dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~  159 (343)
T 1ri6_A           84 GSLTHISTDH---QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVS  159 (343)
T ss_dssp             SCCSEEEECT---TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             CCCcEEEEcC---CCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEec
Confidence            3788999985   8888877665 7889999984   44455555544 3588899999998777666 89999999998


Q ss_pred             C-CCeee------eeccCCeEEEEEECCCCCEEEEe-eCCCeEEEEECCCCCCCCe---Eec-CC-----cccEEEEEEe
Q 024372           92 T-GDEKH------SFEHKHIVRACAFSEDTHLLLTG-GFEKILRIFDLNRPDAPPR---EVG-NS-----SGSIRTVAWL  154 (268)
Q Consensus        92 ~-~~~~~------~~~~~~~v~~v~~~~~~~~l~s~-~~d~~i~~~d~~~~~~~~~---~~~-~~-----~~~v~~~~~~  154 (268)
                      + +....      .......+..++|+|+++.++.+ ..++.+++|+++.......   ... ..     ...+..++|+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s  239 (343)
T 1ri6_A          160 DDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHIT  239 (343)
T ss_dssp             TTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEEC
T ss_pred             CCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEEC
Confidence            7 54422      12234568889999999966554 4889999999853221111   111 01     2245679999


Q ss_pred             CCCCcEEEEeeCCCeEEEEeCC--C--CceEEeecCCCCEEEEEECCCCcEEEEe--CCCeEEEEeC--CCc--eeeeEE
Q 024372          155 HSDQTILSSCTDSGGVRLWDAR--S--GKIVQTLETKSPVTSAEVSRDGRYITTA--DGSSVKFWDA--NHF--GLVKGY  224 (268)
Q Consensus       155 ~~~~~~~~~~~~d~~i~iwd~~--~--~~~~~~~~~~~~v~~~~~s~~g~~l~~~--~~~~v~~wd~--~~~--~~~~~~  224 (268)
                      |++..+++++..++.|++||++  +  .+.+..+.....+..++|+|+|++++.+  .++.|.+|++  ++.  +.+..+
T Consensus       240 ~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~  319 (343)
T 1ri6_A          240 PDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRY  319 (343)
T ss_dssp             TTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEE
T ss_pred             CCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcccc
Confidence            9888887777778999999998  3  3445555554558899999999977654  4689999954  444  334445


Q ss_pred             eCCCCceeeEEcC
Q 024372          225 NMPCNTESASLEP  237 (268)
Q Consensus       225 ~~~~~~~~~~~~~  237 (268)
                      .....+..+++.+
T Consensus       320 ~~g~~p~~i~~~~  332 (343)
T 1ri6_A          320 AVGQGPMWVVVNA  332 (343)
T ss_dssp             ECSSSCCEEEEEE
T ss_pred             ccCCCCeeEEEEc
Confidence            5444455555554

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.86  E-value=4.3e-21  Score=167.03  Aligned_cols=160  Identities=13%  Similarity=0.066  Sum_probs=127.6

Q ss_pred             ecCCCeeeEEEecCCCCCcEEE----EEeCCCCeEEeeCCCC--------C---eEEEeeCccCcEEEEEecCC-CcEEE
Q 024372           14 GHSRPVVDLFYSPITPDGFFLV----SASKDSSPMLRNGETG--------D---WIGTFEGHKGAVWSCCLDAN-ALFSA   77 (268)
Q Consensus        14 ~h~~~v~~~~f~~~~~dg~~l~----s~s~d~~i~iw~~~~~--------~---~~~~~~~h~~~V~~~~~~~~-~~~l~   77 (268)
                      .|...|.+++|+|   +|++||    +|+.|++|++||+.++        +   .+..+.+|.+.|.+++|+|+ +.+++
T Consensus        90 ~~~~~v~~l~~sp---dg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~la  166 (434)
T 2oit_A           90 PMKFPIHHLALSC---DNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVA  166 (434)
T ss_dssp             CCSSCEEEEEECT---TSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEE
T ss_pred             cCCCcccEEEEcC---CCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEE
Confidence            5777899999985   899999    8999999999997654        2   24667789999999999998 78999


Q ss_pred             EeeCCCcEEEEeCCCCCeee-eeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEec-------CCcccEE
Q 024372           78 SGSADFTAKLWDALTGDEKH-SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG-------NSSGSIR  149 (268)
Q Consensus        78 s~s~D~~v~iw~~~~~~~~~-~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~-------~~~~~v~  149 (268)
                      +++.|++|++||+.++.... ...|...|.+++|+|+++.|++|+.|+.|++||++ +.. .....       .|...+.
T Consensus       167 s~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~-~~~~~~~~~~~~~~~~~v~  244 (434)
T 2oit_A          167 VCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQE-KKVIPCPPFYESDHPVRVL  244 (434)
T ss_dssp             EEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCE-EEEECCCTTCCTTSCEEEE
T ss_pred             EEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccc-cccccCCcccCCCCceeEE
Confidence            99999999999998876543 33477899999999999999999999999999986 221 12221       1233789


Q ss_pred             EEEEeCCCCcEEEEeeCCC------eEEEEeCCCC
Q 024372          150 TVAWLHSDQTILSSCTDSG------GVRLWDARSG  178 (268)
Q Consensus       150 ~~~~~~~~~~~~~~~~~d~------~i~iwd~~~~  178 (268)
                      ++.|++++..+++.+..+|      .+++||+++.
T Consensus       245 ~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          245 DVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             EEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             EEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            9999987665555555543      3999999865

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.86  E-value=5.6e-21  Score=175.96  Aligned_cols=236  Identities=12%  Similarity=0.018  Sum_probs=161.5

Q ss_pred             eEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccC---cEEEEEecCCCcEEEEeeC---------CCcEEEE
Q 024372           21 DLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG---AVWSCCLDANALFSASGSA---------DFTAKLW   88 (268)
Q Consensus        21 ~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~---~V~~~~~~~~~~~l~s~s~---------D~~v~iw   88 (268)
                      +++|+|   ||+++++ +.|+++++||..+++....+.+|..   .|..++|+|||+++++++.         |+++++|
T Consensus        20 ~~~~s~---dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~   95 (719)
T 1z68_A           20 FPNWIS---GQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIY   95 (719)
T ss_dssp             CCEESS---SSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             ccEECC---CCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEE
Confidence            678875   8876654 4699999999999998877776654   4899999999999988876         7899999


Q ss_pred             eCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccE-----------------EEE
Q 024372           89 DALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSI-----------------RTV  151 (268)
Q Consensus        89 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v-----------------~~~  151 (268)
                      |+.+++..........+..++|+|||+.|+.+. ++.|++||+.++.........+...+                 ..+
T Consensus        96 d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~  174 (719)
T 1z68_A           96 DLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYAL  174 (719)
T ss_dssp             ETTTTEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCE
T ss_pred             ECCCCccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccE
Confidence            998887632122235678899999999999885 78999999876542111111111112                 478


Q ss_pred             EEeCCCCcEEEEeeCCC---------------------------------eEEEEeCCCCceE---Ee-----ec-CCCC
Q 024372          152 AWLHSDQTILSSCTDSG---------------------------------GVRLWDARSGKIV---QT-----LE-TKSP  189 (268)
Q Consensus       152 ~~~~~~~~~~~~~~~d~---------------------------------~i~iwd~~~~~~~---~~-----~~-~~~~  189 (268)
                      +|+|++..++.++.+++                                 .|++||+.+++..   ..     +. +...
T Consensus       175 ~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~  254 (719)
T 1z68_A          175 WWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYY  254 (719)
T ss_dssp             EECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEE
T ss_pred             EECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcce
Confidence            99999887766654422                                 7899999988753   21     11 2345


Q ss_pred             EEEEEECCCCcEEEEeC--C---CeEEEEe----CCCceeeeEE----eCCCC-ce-----eeEEcCCCCCEEE--eccC
Q 024372          190 VTSAEVSRDGRYITTAD--G---SSVKFWD----ANHFGLVKGY----NMPCN-TE-----SASLEPKLGNIFI--AGGE  248 (268)
Q Consensus       190 v~~~~~s~~g~~l~~~~--~---~~v~~wd----~~~~~~~~~~----~~~~~-~~-----~~~~~~~~~~~~~--~gs~  248 (268)
                      +..++|+||++++++..  +   ..|.+||    +.++++....    ..+.. ..     ...+++ +|+.++  ++..
T Consensus       255 ~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~  333 (719)
T 1z68_A          255 FSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSY-DAISYYKIFSDK  333 (719)
T ss_dssp             EEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECT-TSSCEEEEEECT
T ss_pred             EEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECC-CCCeEEEEEEcc
Confidence            78999999998776532  1   2488899    7766554433    12222 22     456777 576443  3334


Q ss_pred             CC--eEEEEECCCCcE
Q 024372          249 DM--WVHVFDFHTGEQ  262 (268)
Q Consensus       249 d~--~i~~wd~~~g~~  262 (268)
                      ++  .|++||+.+++.
T Consensus       334 ~g~~~l~~~~~~~~~~  349 (719)
T 1z68_A          334 DGYKHIHYIKDTVENA  349 (719)
T ss_dssp             TSCEEEEEESSCSTTC
T ss_pred             CCceEEEEEECCCCce
Confidence            44  688888876653

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.85  E-value=3.6e-19  Score=148.35  Aligned_cols=202  Identities=15%  Similarity=0.130  Sum_probs=154.0

Q ss_pred             CeeeEEEecCCCCCcEE-EEEeCCCCeEEeeCCCCCeEEEeeC-c----cCcEEEEEecCCCcEEEEee-----------
Q 024372           18 PVVDLFYSPITPDGFFL-VSASKDSSPMLRNGETGDWIGTFEG-H----KGAVWSCCLDANALFSASGS-----------   80 (268)
Q Consensus        18 ~v~~~~f~~~~~dg~~l-~s~s~d~~i~iw~~~~~~~~~~~~~-h----~~~V~~~~~~~~~~~l~s~s-----------   80 (268)
                      .+..++|+|   +|+++ ++++.++.|.+||..+++.+..+.. +    ...+..++|+|++++++.++           
T Consensus        35 ~~~~~~~s~---dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~  111 (337)
T 1pby_B           35 TPMVPMVAP---GGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFE  111 (337)
T ss_dssp             CCCCEEECT---TSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred             CccceEEcC---CCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEeccccccccccc
Confidence            478899985   88655 5566678999999999998877763 2    22567889999998887775           


Q ss_pred             -CCCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEe------------------
Q 024372           81 -ADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV------------------  141 (268)
Q Consensus        81 -~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~------------------  141 (268)
                       .++.|++||+.+++....+.....+..+.|+|+++.++++  ++.+.+||+.+++......                  
T Consensus       112 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~  189 (337)
T 1pby_B          112 VQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVW  189 (337)
T ss_dssp             ECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCC
T ss_pred             ccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEe
Confidence             5799999999988887777766677889999999988877  5789999986532110000                  


Q ss_pred             -----------------------------------------------cCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEe
Q 024372          142 -----------------------------------------------GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD  174 (268)
Q Consensus       142 -----------------------------------------------~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd  174 (268)
                                                                     ..+...+..++|+|++..++++   ++.|.+||
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~---~~~v~~~d  266 (337)
T 1pby_B          190 NQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA---YNVLESFD  266 (337)
T ss_dssp             CCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE---ESEEEEEE
T ss_pred             eeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe---CCeEEEEE
Confidence                                                           0001123457888887765554   48999999


Q ss_pred             CCCCceEEeecCCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCC
Q 024372          175 ARSGKIVQTLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMP  227 (268)
Q Consensus       175 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~  227 (268)
                      +++++.+..+.....+.+++|+|+|+++.+ +.++.|++||+.+.+.+..+..+
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~  320 (337)
T 1pby_B          267 LEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP  320 (337)
T ss_dssp             TTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred             CCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence            999998888876666789999999987654 45789999999998888777664

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.85  E-value=1e-19  Score=174.21  Aligned_cols=235  Identities=11%  Similarity=0.005  Sum_probs=177.5

Q ss_pred             ecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeC-----------ccCcEEEEEec-CCCcEEEEeeC
Q 024372           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG-----------HKGAVWSCCLD-ANALFSASGSA   81 (268)
Q Consensus        14 ~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~-----------h~~~V~~~~~~-~~~~~l~s~s~   81 (268)
                      +|. .+...+|+|   ||++|+.+ .++.+.+|+....++. .+.+           |.+.+..++|+ |+++++++++ 
T Consensus       243 ~~~-~~~~~~~Sp---DG~~la~~-~~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-  315 (1045)
T 1k32_A          243 SFT-DYYPRHLNT---DGRRILFS-KGGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-  315 (1045)
T ss_dssp             CCC-SSCEEEEEE---SSSCEEEE-ETTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-
T ss_pred             CCC-CcceeeEcC---CCCEEEEE-eCCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE-
Confidence            344 456778885   89988887 5899999999554443 6655           44578999999 9999988887 


Q ss_pred             CCcEEEEeCCCCCeeeeeccCC-eEEEEEECCCCCEEEEeeCCCeEE-EEECCCCCCCCeEecCCcccEEEEEEeCCCCc
Q 024372           82 DFTAKLWDALTGDEKHSFEHKH-IVRACAFSEDTHLLLTGGFEKILR-IFDLNRPDAPPREVGNSSGSIRTVAWLHSDQT  159 (268)
Q Consensus        82 D~~v~iw~~~~~~~~~~~~~~~-~v~~v~~~~~~~~l~s~~~d~~i~-~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  159 (268)
                      ++.+++|+...+.......+.. .+..+.|+ +++.++.++.+..+. +||+..+.  ......+...+..++|+|++..
T Consensus       316 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~--~~~l~~~~~~~~~~~~SpDG~~  392 (1045)
T 1k32_A          316 RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK--AEKFEENLGNVFAMGVDRNGKF  392 (1045)
T ss_dssp             TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC--EEECCCCCCSEEEEEECTTSSE
T ss_pred             cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC--ceEecCCccceeeeEECCCCCE
Confidence            7899999998877665555666 78999999 999999988888888 88986543  2233356678899999998876


Q ss_pred             EEEEeeCCCeEEEEeCCCCceEEee-cCCCCEEEEEECCCCcEEEEe-CC----------CeEEEEeCCCceeeeEEeC-
Q 024372          160 ILSSCTDSGGVRLWDARSGKIVQTL-ETKSPVTSAEVSRDGRYITTA-DG----------SSVKFWDANHFGLVKGYNM-  226 (268)
Q Consensus       160 ~~~~~~~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~~-~~----------~~v~~wd~~~~~~~~~~~~-  226 (268)
                      ++ +++.++.|++||+++++....+ .+...+.+++|+|||++++.+ .+          ..|++||+...+ +..+.. 
T Consensus       393 la-~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~  470 (1045)
T 1k32_A          393 AV-VANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTE  470 (1045)
T ss_dssp             EE-EEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCS
T ss_pred             EE-EECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCC
Confidence            55 4566799999999999987777 345567899999999988653 32          489999998876 333332 


Q ss_pred             CCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCc
Q 024372          227 PCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGE  261 (268)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~  261 (268)
                      ........|++ +|++|+.++.++...+|+....+
T Consensus       471 ~~~~~~~~~sp-dG~~l~~~s~~~~~~~~~~~~~~  504 (1045)
T 1k32_A          471 NSHDYAPAFDA-DSKNLYYLSYRSLDPSPDRVVLN  504 (1045)
T ss_dssp             SSBEEEEEECT-TSCEEEEEESCCCCCEECSSSSC
T ss_pred             CcccCCceEcC-CCCEEEEEecccCCcCcchhccc
Confidence            22344566776 69999998888888888865443

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.84  E-value=4.7e-19  Score=169.65  Aligned_cols=240  Identities=13%  Similarity=0.036  Sum_probs=177.9

Q ss_pred             EeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC-CCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEe
Q 024372           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (268)
Q Consensus        11 ~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~-~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~   89 (268)
                      .+.+|...+.++.|+|   + .++++++.|+++++|.... +.....+..|.. +...+|+|++++++.+ .++.|++|+
T Consensus       198 ~l~~~~~~v~~~~~s~---d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~-~~~~~~SpDG~~la~~-~~~~i~~~d  271 (1045)
T 1k32_A          198 KIVDMSTHVSSPVIVG---H-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTD-YYPRHLNTDGRRILFS-KGGSIYIFN  271 (1045)
T ss_dssp             EEECCSSCCEEEEEET---T-EEEEEECTTSSCEEEEEETTSCSCEECCCCCS-SCEEEEEESSSCEEEE-ETTEEEEEC
T ss_pred             ECcCCCCcccceEEeC---C-EEEEEEeccCceEEEEEeCCCCcceEecCCCC-cceeeEcCCCCEEEEE-eCCEEEEec
Confidence            3468999999999984   5 6778888999999997643 444556666653 5667999999988887 489999999


Q ss_pred             CCCCCeeeeec------------cCCeEEEEEEC-CCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcc-cEEEEEEeC
Q 024372           90 ALTGDEKHSFE------------HKHIVRACAFS-EDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSG-SIRTVAWLH  155 (268)
Q Consensus        90 ~~~~~~~~~~~------------~~~~v~~v~~~-~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~-~v~~~~~~~  155 (268)
                      +...... .+.            +...+..++|+ |+++.+++++ ++.+.+|++..+.  ......+.+ .+..++|+ 
T Consensus       272 ~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~s-  346 (1045)
T 1k32_A          272 PDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTY--VLKVPEPLRIRYVRRGGD-  346 (1045)
T ss_dssp             TTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSB--EEECSCCSCEEEEEECSS-
T ss_pred             CCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCc--eEEccCCCcceEEeeeEc-
Confidence            8544333 332            22358899999 9999888887 7899999986543  223334555 78889998 


Q ss_pred             CCCcEEEEeeCCCeEE-EEeCCCCceEEeecCCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCC-Ccee
Q 024372          156 SDQTILSSCTDSGGVR-LWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPC-NTES  232 (268)
Q Consensus       156 ~~~~~~~~~~~d~~i~-iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~-~~~~  232 (268)
                      ++..++ .+++++.+. +||+.+++......+...+..++|+|||++|+. +.++.|++||+.+.+.......+. ....
T Consensus       347 dg~~l~-~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~  425 (1045)
T 1k32_A          347 TKVAFI-HGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITD  425 (1045)
T ss_dssp             SEEEEE-EEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCC
T ss_pred             CCCeEE-EEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccc
Confidence            665554 445568888 999988876554444467899999999998875 467899999999887766664433 3466


Q ss_pred             eEEcCCCCCEEEeccCC----------CeEEEEECCCCcEE
Q 024372          233 ASLEPKLGNIFIAGGED----------MWVHVFDFHTGEQI  263 (268)
Q Consensus       233 ~~~~~~~~~~~~~gs~d----------~~i~~wd~~~g~~~  263 (268)
                      +.++| +|++|++++.+          ..|++||+.+++..
T Consensus       426 ~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~  465 (1045)
T 1k32_A          426 FTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF  465 (1045)
T ss_dssp             EEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEE
T ss_pred             eEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCcEE
Confidence            77777 69988887664          38999999988743

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.84  E-value=1.6e-19  Score=167.07  Aligned_cols=242  Identities=10%  Similarity=-0.006  Sum_probs=166.2

Q ss_pred             CCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcE-----EEEEecCCCcEEEEeeCC--------
Q 024372           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAV-----WSCCLDANALFSASGSAD--------   82 (268)
Q Consensus        16 ~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V-----~~~~~~~~~~~l~s~s~D--------   82 (268)
                      .....++.|+|   ||++++++  |++|++|+..+++....+.+|....     ..++|+||+++++.++.+        
T Consensus        16 ~~~~~~~~w~~---dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~   90 (740)
T 4a5s_A           16 RLKLYSLRWIS---DHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSY   90 (740)
T ss_dssp             CCCCCCEEECS---SSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCE
T ss_pred             cccccccEECC---CCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEcc
Confidence            33466889985   89999886  9999999999999888888886432     336789999999988876        


Q ss_pred             -CcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccE-------------
Q 024372           83 -FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSI-------------  148 (268)
Q Consensus        83 -~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v-------------  148 (268)
                       +.+.+||+.+++......+...+...+|||||+.||.+. ++.|++||+.++....-....+...+             
T Consensus        91 ~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~  169 (740)
T 4a5s_A           91 TASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEV  169 (740)
T ss_dssp             EEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHT
T ss_pred             ceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchh
Confidence             456799999988766555677899999999999998874 68999999876542111111111112             


Q ss_pred             ----EEEEEeCCCCcEEEEeeCCC-----------------------------------eEEEEeCCC---C---ceEEe
Q 024372          149 ----RTVAWLHSDQTILSSCTDSG-----------------------------------GVRLWDARS---G---KIVQT  183 (268)
Q Consensus       149 ----~~~~~~~~~~~~~~~~~~d~-----------------------------------~i~iwd~~~---~---~~~~~  183 (268)
                          ..+.|+|++..++.+..++.                                   +|++||+.+   +   +....
T Consensus       170 ~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l  249 (740)
T 4a5s_A          170 FSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQI  249 (740)
T ss_dssp             SSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEE
T ss_pred             cCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEe
Confidence                34789999887766543322                                   588899998   7   33332


Q ss_pred             ec------CCCCEEEEEECCCCcEEEEe--C---CCeEEEEeCCCce----ee--eEE--eCCCC------ceeeEEcCC
Q 024372          184 LE------TKSPVTSAEVSRDGRYITTA--D---GSSVKFWDANHFG----LV--KGY--NMPCN------TESASLEPK  238 (268)
Q Consensus       184 ~~------~~~~v~~~~~s~~g~~l~~~--~---~~~v~~wd~~~~~----~~--~~~--~~~~~------~~~~~~~~~  238 (268)
                      ..      +...+..++|+|||+.++..  .   +..|++||+.+++    +.  ...  ..+..      .....++| 
T Consensus       250 ~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fsp-  328 (740)
T 4a5s_A          250 TAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTL-  328 (740)
T ss_dssp             CCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECT-
T ss_pred             cCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcC-
Confidence            21      23347899999999965532  1   2369999987765    22  111  11111      22456776 


Q ss_pred             CCCEEE-eccC-C--CeEEEEECCCCcEEe
Q 024372          239 LGNIFI-AGGE-D--MWVHVFDFHTGEQIA  264 (268)
Q Consensus       239 ~~~~~~-~gs~-d--~~i~~wd~~~g~~~~  264 (268)
                      +|+.|+ ..+. +  ..|++||..+++...
T Consensus       329 DG~~l~~~~s~~~G~~~l~~~~~~~~~~~~  358 (740)
T 4a5s_A          329 DGNSFYKIISNEEGYRHICYFQIDKKDCTF  358 (740)
T ss_dssp             TSSEEEEEEECTTSCEEEEEEETTCSSCEE
T ss_pred             CCCEEEEEEEcCCCceEEEEEECCCCceEe
Confidence            687766 5553 3  469999988776544

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.84  E-value=1.5e-17  Score=136.20  Aligned_cols=238  Identities=10%  Similarity=0.152  Sum_probs=172.7

Q ss_pred             ecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEee------CccCcEEEEEe-cCCCcEEEEeeC-CCcE
Q 024372           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE------GHKGAVWSCCL-DANALFSASGSA-DFTA   85 (268)
Q Consensus        14 ~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~------~h~~~V~~~~~-~~~~~~l~s~s~-D~~v   85 (268)
                      +|.....+++++|   +|+++++.+.++.|.+|+.. ++.+..+.      +|...+..+++ .+++.++++... ++.|
T Consensus        27 g~~~~p~~v~~~~---~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i  102 (286)
T 1q7f_A           27 GQFTEPSGVAVNA---QNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQI  102 (286)
T ss_dssp             TCBSCEEEEEECT---TCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEE
T ss_pred             CccCCCceEEECC---CCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEE
Confidence            4556788999974   88888888999999999977 77776664      34567889999 577877776643 8899


Q ss_pred             EEEeCCCCCeeeeec--cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEec--CCcccEEEEEEeCCCCcEE
Q 024372           86 KLWDALTGDEKHSFE--HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG--NSSGSIRTVAWLHSDQTIL  161 (268)
Q Consensus        86 ~iw~~~~~~~~~~~~--~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~  161 (268)
                      ++|+ .++.....+.  +...+..++++++++++++...++.|.+||... . ......  .+......+++.+++. ++
T Consensus       103 ~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~-~~~~~~~~~~~~~p~~i~~~~~g~-l~  178 (286)
T 1q7f_A          103 QIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-N-VLHKFGCSKHLEFPNGVVVNDKQE-IF  178 (286)
T ss_dssp             EEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-C-EEEEEECTTTCSSEEEEEECSSSE-EE
T ss_pred             EEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-C-EEEEeCCCCccCCcEEEEECCCCC-EE
Confidence            9999 5566665554  234678999999999888888889999999642 2 222222  2334578899888654 66


Q ss_pred             EEeeCCCeEEEEeCCCCceEEeecCC---CCEEEEEECCCCcEEEEeC-CC-eEEEEeCCCceeeeEEeCCC---Cceee
Q 024372          162 SSCTDSGGVRLWDARSGKIVQTLETK---SPVTSAEVSRDGRYITTAD-GS-SVKFWDANHFGLVKGYNMPC---NTESA  233 (268)
Q Consensus       162 ~~~~~d~~i~iwd~~~~~~~~~~~~~---~~v~~~~~s~~g~~l~~~~-~~-~v~~wd~~~~~~~~~~~~~~---~~~~~  233 (268)
                      ++...++.|++||.. ++.+..+...   ..+..++++|+|+++++.. ++ .|.+||.. .+.+..+....   .+..+
T Consensus       179 v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~i  256 (286)
T 1q7f_A          179 ISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFDV  256 (286)
T ss_dssp             EEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEEE
T ss_pred             EEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEEEEEcccCCCCcceeE
Confidence            666667899999974 5666666533   4588999999999887764 44 99999964 45555554432   24466


Q ss_pred             EEcCCCCCEEEeccCCCeEEEEECCCCcEE
Q 024372          234 SLEPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (268)
Q Consensus       234 ~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~  263 (268)
                      ++.+ +|+++++ +.|+.|++|+.....++
T Consensus       257 ~~~~-~g~l~vs-~~~~~v~v~~~~~~~pv  284 (286)
T 1q7f_A          257 ALMD-DGSVVLA-SKDYRLYIYRYVQLAPV  284 (286)
T ss_dssp             EEET-TTEEEEE-ETTTEEEEEECSCCCCT
T ss_pred             EECC-CCcEEEE-CCCCeEEEEEccccccc
Confidence            7776 6887777 56899999998765443

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.83  E-value=1.5e-18  Score=145.30  Aligned_cols=200  Identities=10%  Similarity=0.044  Sum_probs=146.6

Q ss_pred             CeeeEEEecCCCCCcEEE-EEeCCCCeEEeeCCCCCeEEEeeCcc------CcEEEEEecCCCcEEEEeeCC--------
Q 024372           18 PVVDLFYSPITPDGFFLV-SASKDSSPMLRNGETGDWIGTFEGHK------GAVWSCCLDANALFSASGSAD--------   82 (268)
Q Consensus        18 ~v~~~~f~~~~~dg~~l~-s~s~d~~i~iw~~~~~~~~~~~~~h~------~~V~~~~~~~~~~~l~s~s~D--------   82 (268)
                      .+..++|+|   +|++++ ++..++.|.+||..+++.+..+..+.      ..+..++|+|+++++++++.+        
T Consensus        44 ~~~~~~~s~---dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~  120 (349)
T 1jmx_B           44 GPGTAMMAP---DNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHY  120 (349)
T ss_dssp             SSCEEEECT---TSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCE
T ss_pred             CCceeEECC---CCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEccccccccccc
Confidence            567899985   887654 55678899999999999887776432      237788999999998888765        


Q ss_pred             ----CcEEEEeCCCCC---eeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCC-----------
Q 024372           83 ----FTAKLWDALTGD---EKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNS-----------  144 (268)
Q Consensus        83 ----~~v~iw~~~~~~---~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~-----------  144 (268)
                          +.|.+||+.+++   ....+.+...+.+++|+|+++ +++++.  .|.+||+.+++.. ......           
T Consensus       121 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~  196 (349)
T 1jmx_B          121 VVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYT-VALPLRNWNRKGYSAPD  196 (349)
T ss_dssp             EECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEE-EEECSTTCCCTTBCCCB
T ss_pred             ccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEEccC--cEEEEeCCCCcee-ccccccccCCccccCcc
Confidence                899999998744   334455555688899999999 555543  4999998755321 111100           


Q ss_pred             ---------------------------------------------------------cccEEEEEEeC-CCCcEEEEeeC
Q 024372          145 ---------------------------------------------------------SGSIRTVAWLH-SDQTILSSCTD  166 (268)
Q Consensus       145 ---------------------------------------------------------~~~v~~~~~~~-~~~~~~~~~~~  166 (268)
                                                                               ...+..++++| ++..++++   
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~---  273 (349)
T 1jmx_B          197 VLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV---  273 (349)
T ss_dssp             CCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE---
T ss_pred             ceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE---
Confidence                                                                     01234556667 66655544   


Q ss_pred             CCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCC
Q 024372          167 SGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMP  227 (268)
Q Consensus       167 d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~  227 (268)
                      ++.|.+||+++++.+..+.....+.+++++|+|++|.+ +.++.|++||+++.+.+..+..+
T Consensus       274 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~  335 (349)
T 1jmx_B          274 LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP  335 (349)
T ss_dssp             ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred             cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence            58999999999998888876566779999999976654 45789999999999888877765

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.83  E-value=8.6e-18  Score=141.35  Aligned_cols=206  Identities=10%  Similarity=0.110  Sum_probs=143.8

Q ss_pred             eecCCCeeeEEEecCCCCCcEEEEEe-CCCCeEEeeCC-CCC--eEEEeeC---------ccCcEEEEEecCCCcEEEEe
Q 024372           13 HGHSRPVVDLFYSPITPDGFFLVSAS-KDSSPMLRNGE-TGD--WIGTFEG---------HKGAVWSCCLDANALFSASG   79 (268)
Q Consensus        13 ~~h~~~v~~~~f~~~~~dg~~l~s~s-~d~~i~iw~~~-~~~--~~~~~~~---------h~~~V~~~~~~~~~~~l~s~   79 (268)
                      ..|...+..++|+|   ||++|++++ .++++.+|+.. +++  .+..+..         +...+..++|+|+++++++.
T Consensus        82 ~~~~~~p~~~a~sp---dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~  158 (347)
T 3hfq_A           82 VAPGTPPAYVAVDE---ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVID  158 (347)
T ss_dssp             EEESCCCSEEEEET---TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEE
T ss_pred             ecCCCCCEEEEECC---CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEe
Confidence            45777888999985   899888888 77899999985 333  3333322         12348889999999977777


Q ss_pred             eCCCcEEEEeCC-CCCeeee----eccCCeEEEEEECCCCCEEEE-eeCCCeEEEEECCCCCCCC---eEecCCc-----
Q 024372           80 SADFTAKLWDAL-TGDEKHS----FEHKHIVRACAFSEDTHLLLT-GGFEKILRIFDLNRPDAPP---REVGNSS-----  145 (268)
Q Consensus        80 s~D~~v~iw~~~-~~~~~~~----~~~~~~v~~v~~~~~~~~l~s-~~~d~~i~~~d~~~~~~~~---~~~~~~~-----  145 (268)
                      ..++.|++|++. ++.....    .........++|+|+++.+++ ...++.+.+|++.......   .......     
T Consensus       159 ~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~  238 (347)
T 3hfq_A          159 LGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTA  238 (347)
T ss_dssp             TTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCS
T ss_pred             CCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCC
Confidence            788999999998 4443221    123335778999999996555 5678999999986421111   1111111     


Q ss_pred             -ccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCC---CceEEeecC-CCCEEEEEECCCCcEEEEe--CCCeEEEE--eCC
Q 024372          146 -GSIRTVAWLHSDQTILSSCTDSGGVRLWDARS---GKIVQTLET-KSPVTSAEVSRDGRYITTA--DGSSVKFW--DAN  216 (268)
Q Consensus       146 -~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~---~~~~~~~~~-~~~v~~~~~s~~g~~l~~~--~~~~v~~w--d~~  216 (268)
                       .....++|+|++..+++++..++.|.+||+..   .+.+..+.. ...+..++|+|+|++|+.+  .++.|.+|  |.+
T Consensus       239 ~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~  318 (347)
T 3hfq_A          239 HNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLT  318 (347)
T ss_dssp             CCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             CCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCC
Confidence             34778999999988877777789999999973   244555554 3347799999999977554  35899999  445


Q ss_pred             Cceee
Q 024372          217 HFGLV  221 (268)
Q Consensus       217 ~~~~~  221 (268)
                      ++++.
T Consensus       319 tg~l~  323 (347)
T 3hfq_A          319 SGKLS  323 (347)
T ss_dssp             TCCEE
T ss_pred             CCeEE
Confidence            55443

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.82  E-value=3e-18  Score=146.05  Aligned_cols=251  Identities=14%  Similarity=0.041  Sum_probs=167.3

Q ss_pred             ecEEeeecCCCeee-----EEEecCCCCCcEEEEEeC-CCC--eEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEe
Q 024372            8 VPLVCHGHSRPVVD-----LFYSPITPDGFFLVSASK-DSS--PMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASG   79 (268)
Q Consensus         8 ~~~~~~~h~~~v~~-----~~f~~~~~dg~~l~s~s~-d~~--i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~   79 (268)
                      .+..+..|......     .+|+   |||++|+.++. ++.  +.+||..+++......+|...+..++|+|+++.|+.+
T Consensus        22 ~~~~lt~~~~~~~~~~~~~~~~S---pDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~   98 (388)
T 3pe7_A           22 QVTRLTPPDVTCHRNYFYQKCFT---RDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYV   98 (388)
T ss_dssp             EEEECSCTTSCEECCCTTSCCBC---TTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEE
T ss_pred             ceEEecCCcccccchhhcCccCC---CCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEE
Confidence            34445556655554     5666   59999999988 675  6667999998877777777776677899999999999


Q ss_pred             eCCCcEEEEeCCCCCeeeeecc-CCeEEEE--EECCCCCEEEEe----------------------eCCCeEEEEECCCC
Q 024372           80 SADFTAKLWDALTGDEKHSFEH-KHIVRAC--AFSEDTHLLLTG----------------------GFEKILRIFDLNRP  134 (268)
Q Consensus        80 s~D~~v~iw~~~~~~~~~~~~~-~~~v~~v--~~~~~~~~l~s~----------------------~~d~~i~~~d~~~~  134 (268)
                      +.++.+++||+.+++....... ...+...  .++++++.++..                      ..+..|.+||+.++
T Consensus        99 ~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g  178 (388)
T 3pe7_A           99 KDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG  178 (388)
T ss_dssp             ETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC
T ss_pred             eCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC
Confidence            9999999999999887665543 3334333  348999988742                      24577999998765


Q ss_pred             CCCCeEecCCcccEEEEEEeC-CCCcEEEEeeC-----CCeEEEEeCCCCceEEeecCCC--CEEEEEECCCCcEEE-Ee
Q 024372          135 DAPPREVGNSSGSIRTVAWLH-SDQTILSSCTD-----SGGVRLWDARSGKIVQTLETKS--PVTSAEVSRDGRYIT-TA  205 (268)
Q Consensus       135 ~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~-----d~~i~iwd~~~~~~~~~~~~~~--~v~~~~~s~~g~~l~-~~  205 (268)
                      +  ......+...+..+.|+| ++..++.+...     ...|.++|+..++.........  .+....|+|||+.|+ .+
T Consensus       179 ~--~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~  256 (388)
T 3pe7_A          179 E--STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVS  256 (388)
T ss_dssp             C--EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEE
T ss_pred             c--eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEe
Confidence            3  233334455688899999 77665544432     2378888887665544333332  477889999998664 33


Q ss_pred             C--CC---eEEEEeCCCceeeeEEeCCC------CceeeEEcCCCCCEEEec---------cCCCeEEEEECCCCcEEe
Q 024372          206 D--GS---SVKFWDANHFGLVKGYNMPC------NTESASLEPKLGNIFIAG---------GEDMWVHVFDFHTGEQIA  264 (268)
Q Consensus       206 ~--~~---~v~~wd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~g---------s~d~~i~~wd~~~g~~~~  264 (268)
                      .  +.   .|.+||+.+.+.......+.      ......++| +|+.++..         ..+..|++||+.+|+...
T Consensus       257 ~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~  334 (388)
T 3pe7_A          257 YLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVG-DGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHR  334 (388)
T ss_dssp             EETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEE-EECCC------------CCCCEEEEEETTTTEEEE
T ss_pred             cCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEcc-CCCcceeEeeeccccccCCCCEEEEEeccCCceEE
Confidence            2  22   39999998775433222221      011224666 56666643         456789999998877543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.82  E-value=4.9e-17  Score=136.23  Aligned_cols=236  Identities=8%  Similarity=0.064  Sum_probs=177.3

Q ss_pred             CCCeeeEEEecCCCCCcEEEEEeCC------------------------CCeEEeeCCCCCeEEEee-CccCcEEEEEec
Q 024372           16 SRPVVDLFYSPITPDGFFLVSASKD------------------------SSPMLRNGETGDWIGTFE-GHKGAVWSCCLD   70 (268)
Q Consensus        16 ~~~v~~~~f~~~~~dg~~l~s~s~d------------------------~~i~iw~~~~~~~~~~~~-~h~~~V~~~~~~   70 (268)
                      .+.+.+++++|   +|+++++.+.+                        ++|.+||..+++.+..+. ++-.....++++
T Consensus        23 l~~v~~va~d~---~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d   99 (329)
T 3fvz_A           23 PGQVSGVALDS---KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSID   99 (329)
T ss_dssp             CSCEEEEEECT---TCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEEC
T ss_pred             cCCceEEEECC---CCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEEC
Confidence            45789999985   89999988888                        479999999999887765 455678899999


Q ss_pred             CCCcEEEEeeCCCcEEEEeCCCCC-eeeeec----------cCCeEEEEEECC-CCCEEEEee-CCCeEEEEECCCCCCC
Q 024372           71 ANALFSASGSADFTAKLWDALTGD-EKHSFE----------HKHIVRACAFSE-DTHLLLTGG-FEKILRIFDLNRPDAP  137 (268)
Q Consensus        71 ~~~~~l~s~s~D~~v~iw~~~~~~-~~~~~~----------~~~~v~~v~~~~-~~~~l~s~~-~d~~i~~~d~~~~~~~  137 (268)
                      +++.++++...++.|++|+..... .+..+.          +-.....++++| ++.++++.+ .++.|++||.. +.. 
T Consensus       100 ~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g~~-  177 (329)
T 3fvz_A          100 TDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-GKF-  177 (329)
T ss_dssp             TTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-SCE-
T ss_pred             CCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-CCE-
Confidence            999988998899999999986542 344432          222578899999 888888876 68999999943 322 


Q ss_pred             CeEecC----------CcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecC---CCCEEEEEECCCCcEEEE
Q 024372          138 PREVGN----------SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET---KSPVTSAEVSRDGRYITT  204 (268)
Q Consensus       138 ~~~~~~----------~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~---~~~v~~~~~s~~g~~l~~  204 (268)
                      ...+..          +......+++.++++.++++...++.|++||..+++.+.++..   ...+..++++| +..+..
T Consensus       178 ~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~  256 (329)
T 3fvz_A          178 VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAV  256 (329)
T ss_dssp             EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEE
T ss_pred             EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEe
Confidence            222221          1123678999988677888888889999999999999888742   34578999999 433332


Q ss_pred             e--------CCCeEEEEeCCCceeeeEEeC----CCCceeeEEcCCCCCEEEeccCCCeEEEEECC
Q 024372          205 A--------DGSSVKFWDANHFGLVKGYNM----PCNTESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (268)
Q Consensus       205 ~--------~~~~v~~wd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~  258 (268)
                      .        .+..|++||..+++.+..+..    -..+..+++.+ +|.++++...++.|++|+..
T Consensus       257 ~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~~~  321 (329)
T 3fvz_A          257 NGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASE-DGTVYIGDAHTNTVWKFTLT  321 (329)
T ss_dssp             ECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECT-TSEEEEEESSSCCEEEEEEE
T ss_pred             CCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECC-CCCEEEEECCCCEEEEEeCC
Confidence            2        234899999999888887742    22355677777 58888898999999999975

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.80  E-value=6.6e-18  Score=143.93  Aligned_cols=239  Identities=10%  Similarity=0.015  Sum_probs=160.4

Q ss_pred             eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEE--ecCCCcEEEE------------
Q 024372           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC--LDANALFSAS------------   78 (268)
Q Consensus        13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~--~~~~~~~l~s------------   78 (268)
                      .+|...+.++.|+|   ||++|+.++.++.+.+||+.+++....+..+.+.+....  +++++.+++.            
T Consensus        77 ~~~~~~~~~~~~sp---dg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~  153 (388)
T 3pe7_A           77 EGRGDNTFGGFLSP---DDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLT  153 (388)
T ss_dssp             CSSCBCSSSCEECT---TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC
T ss_pred             eCCCCCccceEEcC---CCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCccccccc
Confidence            45555666778884   999999999999999999999987766766666664444  4899988763            


Q ss_pred             ----------eeCCCcEEEEeCCCCCeeeeeccCCeEEEEEECC-CCCEEEEeeCC------CeEEEEECCCCCCCCeEe
Q 024372           79 ----------GSADFTAKLWDALTGDEKHSFEHKHIVRACAFSE-DTHLLLTGGFE------KILRIFDLNRPDAPPREV  141 (268)
Q Consensus        79 ----------~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~s~~~d------~~i~~~d~~~~~~~~~~~  141 (268)
                                .+.+..|++||+.+++......+...+..+.|+| +++.|+....+      ..|.++|+....  ...+
T Consensus       154 ~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~--~~~l  231 (388)
T 3pe7_A          154 DWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN--MRKV  231 (388)
T ss_dssp             SHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC--CEES
T ss_pred             ccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc--eEEe
Confidence                      2245789999999988776667777889999999 99988876653      367777765432  2333


Q ss_pred             cCCc--ccEEEEEEeCCCCcEEEEeeCCC----eEEEEeCCCCceEE--eecCCCC----EEEEEECCCCcEEEE-----
Q 024372          142 GNSS--GSIRTVAWLHSDQTILSSCTDSG----GVRLWDARSGKIVQ--TLETKSP----VTSAEVSRDGRYITT-----  204 (268)
Q Consensus       142 ~~~~--~~v~~~~~~~~~~~~~~~~~~d~----~i~iwd~~~~~~~~--~~~~~~~----v~~~~~s~~g~~l~~-----  204 (268)
                      ..+.  ..+....|+|++..++..+..++    .|.+||+.+++...  .+.....    .....|+|||+.++.     
T Consensus       232 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  311 (388)
T 3pe7_A          232 KTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDD  311 (388)
T ss_dssp             CCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-------
T ss_pred             eeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeec
Confidence            2222  24677899999987755544322    39999999987533  2322000    112368999987653     


Q ss_pred             -----eCCCeEEEEeCCCceeeeEEeCCC-----------CceeeEEcCCCCCEEEecc-CCCeEEEEEC
Q 024372          205 -----ADGSSVKFWDANHFGLVKGYNMPC-----------NTESASLEPKLGNIFIAGG-EDMWVHVFDF  257 (268)
Q Consensus       205 -----~~~~~v~~wd~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~gs-~d~~i~~wd~  257 (268)
                           ..+..|.+||+...+.........           ......++| +|+.|+..+ .++...+|.+
T Consensus       312 ~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sp-Dg~~l~~~s~~~g~~~l~~~  380 (388)
T 3pe7_A          312 SGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTP-DDKQILFTSDVHGKPALYLA  380 (388)
T ss_dssp             -----CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECT-TSSEEEEEECTTSSCEEEEE
T ss_pred             cccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCC-CCCEEEEEecCCCceeEEEE
Confidence                 234689999998765533333322           244567777 687776544 4665555543

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.79  E-value=5.3e-18  Score=152.56  Aligned_cols=198  Identities=11%  Similarity=0.013  Sum_probs=140.3

Q ss_pred             ccCcEEEEEecCCCcEEEEeeC-CCcEEEEeCCCCCeeeeeccC-CeEEEEEECCCCCEEEEeeC---CCeEEEEECCC-
Q 024372           60 HKGAVWSCCLDANALFSASGSA-DFTAKLWDALTGDEKHSFEHK-HIVRACAFSEDTHLLLTGGF---EKILRIFDLNR-  133 (268)
Q Consensus        60 h~~~V~~~~~~~~~~~l~s~s~-D~~v~iw~~~~~~~~~~~~~~-~~v~~v~~~~~~~~l~s~~~---d~~i~~~d~~~-  133 (268)
                      +..+|++++|+|||++||+++. |++++||++.++...+...+. ..+..+.|+|+ +++++++.   +...++|.++. 
T Consensus        20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~   98 (582)
T 3o4h_A           20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS   98 (582)
T ss_dssp             HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred             hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence            3568999999999999998886 999999998766665555555 58999999999 78877765   55567765533 


Q ss_pred             -CCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEE-eCC----
Q 024372          134 -PDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-ADG----  207 (268)
Q Consensus       134 -~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~----  207 (268)
                       .... ....... .....+|+|++..++.++..++.+.|||+.+++.........  .+++|+|||+++++ +.+    
T Consensus        99 ~~g~~-~~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~  174 (582)
T 3o4h_A           99 RPGEE-QRLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGR  174 (582)
T ss_dssp             STTCC-EECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTE
T ss_pred             CCCcc-ccccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCC
Confidence             2222 2222222 234567888876644443444566699999988766554433  78999999999874 333    


Q ss_pred             CeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCCC--eEEEEECCCCcEE
Q 024372          208 SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDM--WVHVFDFHTGEQI  263 (268)
Q Consensus       208 ~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~--~i~~wd~~~g~~~  263 (268)
                      ..|++||+.+.+...............++| +|++|+++..++  .|++||+.+|+..
T Consensus       175 ~~i~~~d~~~g~~~~l~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~i~~~d~~~~~~~  231 (582)
T 3o4h_A          175 VSLFTSNLSSGGLRVFDSGEGSFSSASISP-GMKVTAGLETAREARLVTVDPRDGSVE  231 (582)
T ss_dssp             EEEEEEETTTCCCEEECCSSCEEEEEEECT-TSCEEEEEECSSCEEEEEECTTTCCEE
T ss_pred             eEEEEEcCCCCCceEeecCCCccccceECC-CCCEEEEccCCCeeEEEEEcCCCCcEE
Confidence            679999998766543222233345677777 699999777788  8999999988876

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.79  E-value=3.3e-17  Score=149.38  Aligned_cols=251  Identities=11%  Similarity=-0.028  Sum_probs=161.8

Q ss_pred             EEeeecCCCee---------eEEEecCCCCCcE-EEEEeC-CCCeEEeeCC--C-CCeEEEeeC-----ccCcEEEEEec
Q 024372           10 LVCHGHSRPVV---------DLFYSPITPDGFF-LVSASK-DSSPMLRNGE--T-GDWIGTFEG-----HKGAVWSCCLD   70 (268)
Q Consensus        10 ~~~~~h~~~v~---------~~~f~~~~~dg~~-l~s~s~-d~~i~iw~~~--~-~~~~~~~~~-----h~~~V~~~~~~   70 (268)
                      ..+.+|...+.         ...|+ .+|||++ |+.++. +..|.+++..  . ++ ...+..     |...+..++|+
T Consensus        61 ~~l~~~~~~~~~~~~~~~~~~~~~~-~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~s  138 (662)
T 3azo_A           61 ESALPAPWNVRNRVFEYSGFPWAGV-PRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLL  138 (662)
T ss_dssp             EESSCTTCCBCCCGGGTCCCCEEEE-CCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEE
T ss_pred             ceeCCCCccccccccccCCccceee-eecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEEC
Confidence            33445665655         55565 1258988 665543 3444455554  2 43 445655     67789999999


Q ss_pred             CCCcEEEEeeCC----------CcEEEEeCCC------CCeeeee-ccCCeEEEEEECCCCCEEEEeeCC--------Ce
Q 024372           71 ANALFSASGSAD----------FTAKLWDALT------GDEKHSF-EHKHIVRACAFSEDTHLLLTGGFE--------KI  125 (268)
Q Consensus        71 ~~~~~l~s~s~D----------~~v~iw~~~~------~~~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d--------~~  125 (268)
                      ||++.|++++.|          ..|++||+.+      +...... .+...+..+.|+|||+.|+.++.+        ..
T Consensus       139 pDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~  218 (662)
T 3azo_A          139 PERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTE  218 (662)
T ss_dssp             TTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEE
T ss_pred             CCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcE
Confidence            999999988877          5899999988      5555444 455678889999999999987755        37


Q ss_pred             EEEEECC-CCC--CCCeEecCCcccEEEEEEeCCCCcEEEEeeCCC--eEEEEeCCCCceEEeecCCCC---------EE
Q 024372          126 LRIFDLN-RPD--APPREVGNSSGSIRTVAWLHSDQTILSSCTDSG--GVRLWDARSGKIVQTLETKSP---------VT  191 (268)
Q Consensus       126 i~~~d~~-~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~---------v~  191 (268)
                      |.+||+. ++.  ........+...+..+.|+|++. +++++..++  .|.+||+.+++.......+..         +.
T Consensus       219 i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~  297 (662)
T 3azo_A          219 LKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMR  297 (662)
T ss_dssp             EEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCC
T ss_pred             EEEEEECCCCcccccEEeCCCCCceEcceEECCCCe-EEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCc
Confidence            9999987 331  12222333456788999999888 666666667  677788877776554443221         45


Q ss_pred             EEEECCCCcEEEEeCCCeEEEE--eCCCceeeeEEeCCCCceeeEEcCCCCCEEEe-ccCCC--eEEEEECCCCcEEe
Q 024372          192 SAEVSRDGRYITTADGSSVKFW--DANHFGLVKGYNMPCNTESASLEPKLGNIFIA-GGEDM--WVHVFDFHTGEQIA  264 (268)
Q Consensus       192 ~~~~s~~g~~l~~~~~~~v~~w--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gs~d~--~i~~wd~~~g~~~~  264 (268)
                      .++++|++++++++..+.+++|  |+...+ ++.+..+.......+.++.+.++++ ++.+.  .|++||+.+|+...
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~  374 (662)
T 3azo_A          298 WFAPLANGLIAVVHGKGAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRART  374 (662)
T ss_dssp             SEEECTTSCEEEEEBSSSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEE
T ss_pred             eEeEeCCCEEEEEEEcCccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEE
Confidence            7889999998876533788888  655444 4445444332222213333344444 44454  46666777777544

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.78  E-value=4.7e-16  Score=131.48  Aligned_cols=228  Identities=11%  Similarity=0.069  Sum_probs=149.3

Q ss_pred             CcEEEEEe----CCCCeEEee--CCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCC----CcEEEEeCCC--CCee--
Q 024372           31 GFFLVSAS----KDSSPMLRN--GETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD----FTAKLWDALT--GDEK--   96 (268)
Q Consensus        31 g~~l~s~s----~d~~i~iw~--~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D----~~v~iw~~~~--~~~~--   96 (268)
                      ..+++.|+    .++.|.+|.  ..++++......|......++|+|+++++++++.+    +.+.+|++..  +...  
T Consensus        13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~   92 (361)
T 3scy_A           13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL   92 (361)
T ss_dssp             EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE
T ss_pred             ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe
Confidence            44566664    456788874  46676543222266777889999999999888875    7999998865  3322  


Q ss_pred             eeec-cCCeEEEEEECCCCCEEEEee-CCCeEEEEECCCCCCCC---eEecC----------CcccEEEEEEeCCCCcEE
Q 024372           97 HSFE-HKHIVRACAFSEDTHLLLTGG-FEKILRIFDLNRPDAPP---REVGN----------SSGSIRTVAWLHSDQTIL  161 (268)
Q Consensus        97 ~~~~-~~~~v~~v~~~~~~~~l~s~~-~d~~i~~~d~~~~~~~~---~~~~~----------~~~~v~~~~~~~~~~~~~  161 (268)
                      .... +......+++  +++.+++++ .++.+.+|++.......   .....          +...+.+++|+|++..++
T Consensus        93 ~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~  170 (361)
T 3scy_A           93 NTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLL  170 (361)
T ss_dssp             EEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEE
T ss_pred             eEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEE
Confidence            2222 3345566677  777777666 67899999986432211   11110          122357799999988788


Q ss_pred             EEeeCCCeEEEEeCCCCc-------e-------EEeecCCCCEEEEEECCCCcEEEE-e-CCCeEEEEeCCCcee--eeE
Q 024372          162 SSCTDSGGVRLWDARSGK-------I-------VQTLETKSPVTSAEVSRDGRYITT-A-DGSSVKFWDANHFGL--VKG  223 (268)
Q Consensus       162 ~~~~~d~~i~iwd~~~~~-------~-------~~~~~~~~~v~~~~~s~~g~~l~~-~-~~~~v~~wd~~~~~~--~~~  223 (268)
                      +++..++.|++|++....       .       .........+..++|+|+|+++.. . .++.|.+||+.....  +..
T Consensus       171 ~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~  250 (361)
T 3scy_A          171 ADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQT  250 (361)
T ss_dssp             EEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEE
T ss_pred             EEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEE
Confidence            777777899999886533       1       222334456789999999997654 4 478999999876543  333


Q ss_pred             EeCC----CCceeeEEcCCCCCEEEecc-C-CCeEEEEECC--CCc
Q 024372          224 YNMP----CNTESASLEPKLGNIFIAGG-E-DMWVHVFDFH--TGE  261 (268)
Q Consensus       224 ~~~~----~~~~~~~~~~~~~~~~~~gs-~-d~~i~~wd~~--~g~  261 (268)
                      ....    .....+.++| +|++|+++. . ++.|.+|++.  +|+
T Consensus       251 ~~~~~~~~~~~~~i~~sp-dg~~l~v~~~~~~~~i~v~~~~~~~g~  295 (361)
T 3scy_A          251 VAADTVNAQGSGDIHLSP-DGKYLYASNRLKADGVAIFKVDETNGT  295 (361)
T ss_dssp             EESCSSCCCCEEEEEECT-TSSEEEEEECSSSCEEEEEEECTTTCC
T ss_pred             EecCCCCCCCcccEEECC-CCCEEEEECCCCCCEEEEEEEcCCCCc
Confidence            3221    1234667777 688776554 4 5889999985  555

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.78  E-value=1.3e-15  Score=125.35  Aligned_cols=241  Identities=10%  Similarity=0.018  Sum_probs=172.7

Q ss_pred             EEeeecCCCeeeEEEecCCCCCc-EEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEE
Q 024372           10 LVCHGHSRPVVDLFYSPITPDGF-FLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLW   88 (268)
Q Consensus        10 ~~~~~h~~~v~~~~f~~~~~dg~-~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw   88 (268)
                      ..+..+.....+++|+|   +|+ +++++..++.|..|+..++  ...+..+...+..+++++++.++++...++.|.+|
T Consensus        21 ~~l~~~~~~~eg~~~d~---~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~   95 (296)
T 3e5z_A           21 RRLADGFTWTEGPVYVP---ARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQ   95 (296)
T ss_dssp             EEEECCCSSEEEEEEEG---GGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEE
T ss_pred             EEEecCCccccCCeEeC---CCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEE
Confidence            33445667778999986   787 7888999999999999887  66777788889999999999988887778999999


Q ss_pred             eCCCCCeeeeecc-----CCeEEEEEECCCCCEEEE----eeC-------------CCeEEEEECCCCCCCCeEecCCcc
Q 024372           89 DALTGDEKHSFEH-----KHIVRACAFSEDTHLLLT----GGF-------------EKILRIFDLNRPDAPPREVGNSSG  146 (268)
Q Consensus        89 ~~~~~~~~~~~~~-----~~~v~~v~~~~~~~~l~s----~~~-------------d~~i~~~d~~~~~~~~~~~~~~~~  146 (268)
                      |..++........     ...+..++++|+|+++++    |..             .+.|..++.. +  ..........
T Consensus        96 d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g--~~~~~~~~~~  172 (296)
T 3e5z_A           96 REPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G--TLSAPIRDRV  172 (296)
T ss_dssp             CSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S--CEEEEECCCS
T ss_pred             cCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-C--CEEEeecCCC
Confidence            9987775443321     123567899999998887    331             2355555543 2  2233333445


Q ss_pred             cEEEEEEeCCCCcEEEEeeCCCeEEEEeCC-CCce---EEeec-CCCCEEEEEECCCCcEEEEeCCCeEEEEeCCCceee
Q 024372          147 SIRTVAWLHSDQTILSSCTDSGGVRLWDAR-SGKI---VQTLE-TKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLV  221 (268)
Q Consensus       147 ~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~-~~~~---~~~~~-~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~  221 (268)
                      ....++|+|++..+ ++.+.++.|.+||+. +++.   ...+. ....+..++++++|+++++. ++.|.+||.. .+.+
T Consensus       173 ~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~-g~~~  249 (296)
T 3e5z_A          173 KPNGLAFLPSGNLL-VSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPD-GDEL  249 (296)
T ss_dssp             SEEEEEECTTSCEE-EEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTT-SCEE
T ss_pred             CCccEEECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCC-CCEE
Confidence            56889999988776 666777899999986 5554   23332 12335689999999988777 7899999986 5667


Q ss_pred             eEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcE
Q 024372          222 KGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ  262 (268)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~  262 (268)
                      ..+..+..+..+++..++++.|++++.++ +..++.++.+.
T Consensus       250 ~~~~~~~~~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~~  289 (296)
T 3e5z_A          250 GRVLTPQTTSNLCFGGPEGRTLYMTVSTE-FWSIETNVRGL  289 (296)
T ss_dssp             EEEECSSCCCEEEEESTTSCEEEEEETTE-EEEEECSCCBC
T ss_pred             EEEECCCCceeEEEECCCCCEEEEEcCCe-EEEEEcccccc
Confidence            77776655566666544677777777664 66667766543

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.78  E-value=8.5e-19  Score=161.40  Aligned_cols=231  Identities=10%  Similarity=0.058  Sum_probs=154.6

Q ss_pred             CeeeEEEecCCCCCcEEEEEeC---------CCCeEEeeCCCCCeE--EEeeCccCcEEEEEecCCCcEEEEeeCCCcEE
Q 024372           18 PVVDLFYSPITPDGFFLVSASK---------DSSPMLRNGETGDWI--GTFEGHKGAVWSCCLDANALFSASGSADFTAK   86 (268)
Q Consensus        18 ~v~~~~f~~~~~dg~~l~s~s~---------d~~i~iw~~~~~~~~--~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~   86 (268)
                      .|.+++|+|   ||++|+.++.         |+++.+||+.+++.+  ..+   ...+..++|+|||++||.++ |+.|+
T Consensus        61 ~~~~~~~Sp---Dg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~  133 (719)
T 1z68_A           61 NASNYGLSP---DRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIY  133 (719)
T ss_dssp             TCSEEEECT---TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEE
T ss_pred             ceeeEEECC---CCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEE
Confidence            488999985   9999999987         789999999998763  223   35688899999999998875 78999


Q ss_pred             EEeCCCCCeeeeec--cCCeE-----------------EEEEECCCCCEEEEeeCCC-----------------------
Q 024372           87 LWDALTGDEKHSFE--HKHIV-----------------RACAFSEDTHLLLTGGFEK-----------------------  124 (268)
Q Consensus        87 iw~~~~~~~~~~~~--~~~~v-----------------~~v~~~~~~~~l~s~~~d~-----------------------  124 (268)
                      +|++.++.......  +...+                 ..++|+|||+.|++++.|.                       
T Consensus       134 ~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  213 (719)
T 1z68_A          134 LKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIP  213 (719)
T ss_dssp             EESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEE
T ss_pred             EEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeec
Confidence            99998877654321  11212                 4799999999999987652                       


Q ss_pred             -----------eEEEEECCCCCCC----C---eEecCCcccEEEEEEeCCCCcEEEEeeCC----CeEEEEe----CCCC
Q 024372          125 -----------ILRIFDLNRPDAP----P---REVGNSSGSIRTVAWLHSDQTILSSCTDS----GGVRLWD----ARSG  178 (268)
Q Consensus       125 -----------~i~~~d~~~~~~~----~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~d----~~i~iwd----~~~~  178 (268)
                                 .+++||+.++...    .   ..+..+...+..++|+|++ .++++..+.    ..|.+||    +.++
T Consensus       214 yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~-~~~~~~~~~~~~~~~l~~~d~~~~~~~g  292 (719)
T 1z68_A          214 YPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDE-RVCLQWLKRVQNVSVLSICDFREDWQTW  292 (719)
T ss_dssp             CCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSS-EEEEEEEESSTTEEEEEEEEECSSSSSE
T ss_pred             CCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCC-eEEEEEeccccCeEEEEEEcccCCCCCC
Confidence                       7889998754321    0   1122466678999999985 455443321    2488899    8887


Q ss_pred             ceEEee----cC-CCCEE-----EEEECCCCcEEE--Ee-CCC--eEEEEeCCCceeeeEEeCC-CCceeeEEcCCCCCE
Q 024372          179 KIVQTL----ET-KSPVT-----SAEVSRDGRYIT--TA-DGS--SVKFWDANHFGLVKGYNMP-CNTESASLEPKLGNI  242 (268)
Q Consensus       179 ~~~~~~----~~-~~~v~-----~~~~s~~g~~l~--~~-~~~--~v~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  242 (268)
                      ++...+    .. ...+.     .+.|+|||+.++  ++ .++  .|.+||+...+ .+.+... .......++  +++.
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~--d~~~  369 (719)
T 1z68_A          293 DCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV--TQDS  369 (719)
T ss_dssp             ECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE--CSSE
T ss_pred             ceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE--eCCE
Confidence            765544    22 23344     789999998543  33 333  57788886654 2233222 223334444  3555


Q ss_pred             EE-eccC----CCeEEEEECCC
Q 024372          243 FI-AGGE----DMWVHVFDFHT  259 (268)
Q Consensus       243 ~~-~gs~----d~~i~~wd~~~  259 (268)
                      ++ ++..    ++.+++|.+..
T Consensus       370 i~~~~~~~~~~~~~~~l~~~~~  391 (719)
T 1z68_A          370 LFYSSNEFEEYPGRRNIYRISI  391 (719)
T ss_dssp             EEEEESCGGGCTTCBEEEEEEC
T ss_pred             EEEEEecCCCCCceEEEEEEeC
Confidence            55 4444    47788887653

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.77  E-value=1.9e-16  Score=144.43  Aligned_cols=245  Identities=11%  Similarity=-0.024  Sum_probs=165.1

Q ss_pred             eeecCCCeeeEEEecCCCCCcEEEEE--eCCCCeEEeeCCCCCeEEEeeCccCcEE---------EEEec--CCCcE-EE
Q 024372           12 CHGHSRPVVDLFYSPITPDGFFLVSA--SKDSSPMLRNGETGDWIGTFEGHKGAVW---------SCCLD--ANALF-SA   77 (268)
Q Consensus        12 ~~~h~~~v~~~~f~~~~~dg~~l~s~--s~d~~i~iw~~~~~~~~~~~~~h~~~V~---------~~~~~--~~~~~-l~   77 (268)
                      +.+|...+..++|++   ++.++++.  +.++...||....+.....+..|...+.         ...++  ||++. ++
T Consensus        19 ~~~~~~~~~~~~~s~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la   95 (662)
T 3azo_A           19 VASRSGRPACVGAVG---DEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLV   95 (662)
T ss_dssp             HHHTCSCCEEEEEET---TEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred             HhhcCCccceeEEcC---CeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEE
Confidence            347999999999984   77677776  5588889998555555666777766655         55555  99987 76


Q ss_pred             Eee-CCCcEEEEeCC--C-CCeeeeec-----cCCeEEEEEECCCCCEEEEeeCC----------CeEEEEECCCCC---
Q 024372           78 SGS-ADFTAKLWDAL--T-GDEKHSFE-----HKHIVRACAFSEDTHLLLTGGFE----------KILRIFDLNRPD---  135 (268)
Q Consensus        78 s~s-~D~~v~iw~~~--~-~~~~~~~~-----~~~~v~~v~~~~~~~~l~s~~~d----------~~i~~~d~~~~~---  135 (268)
                      ..+ .+..|.+|++.  . +.......     +...+..++|+||++.|++++.+          ..|.+||+....   
T Consensus        96 ~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  175 (662)
T 3azo_A           96 FTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAAD  175 (662)
T ss_dssp             EEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTC
T ss_pred             EEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcccc
Confidence            554 35677777775  3 44333223     45568899999999999988876          589999987610   


Q ss_pred             -CCCeEec-CCcccEEEEEEeCCCCcEEEEeeCC-------CeEEEEeCC-CC---ceEEeecC-CCCEEEEEECCCCcE
Q 024372          136 -APPREVG-NSSGSIRTVAWLHSDQTILSSCTDS-------GGVRLWDAR-SG---KIVQTLET-KSPVTSAEVSRDGRY  201 (268)
Q Consensus       136 -~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~d-------~~i~iwd~~-~~---~~~~~~~~-~~~v~~~~~s~~g~~  201 (268)
                       .....+. .+...+..++|+|++..++.++.+.       ..|++||+. ++   +....... ...+..+.|+|||++
T Consensus       176 ~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l  255 (662)
T 3azo_A          176 RSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSL  255 (662)
T ss_dssp             GGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCE
T ss_pred             CCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeE
Confidence             1233333 3445677789999988776665443       479999998 57   44443333 456889999999997


Q ss_pred             EEEeC-CC--eEEEEeCCCceeeeEEeCCCC---------ceeeEEcCCCCCEEEeccCCCeEEEE--ECCCCc
Q 024372          202 ITTAD-GS--SVKFWDANHFGLVKGYNMPCN---------TESASLEPKLGNIFIAGGEDMWVHVF--DFHTGE  261 (268)
Q Consensus       202 l~~~~-~~--~v~~wd~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~gs~d~~i~~w--d~~~g~  261 (268)
                      +++++ ++  .|.+||+...+.......+..         ...+.+++ +++++++++. +.+++|  |..+++
T Consensus       256 ~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~-~~~~~~~~~~-~~~~l~~~d~~~~~  327 (662)
T 3azo_A          256 IVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLA-NGLIAVVHGK-GAAVLGILDPESGE  327 (662)
T ss_dssp             EEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECT-TSCEEEEEBS-SSCEEEEEETTTTE
T ss_pred             EEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeC-CCEEEEEEEc-CccEEEEEECCCCc
Confidence            66653 45  677777755544332222211         22445555 5888888888 888888  655555

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.76  E-value=2.2e-17  Score=140.73  Aligned_cols=237  Identities=13%  Similarity=0.057  Sum_probs=154.1

Q ss_pred             eeeEEEecCCCCCcEEEEEeCC-C--CeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCe
Q 024372           19 VVDLFYSPITPDGFFLVSASKD-S--SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE   95 (268)
Q Consensus        19 v~~~~f~~~~~dg~~l~s~s~d-~--~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~   95 (268)
                      +.+++|+   |||++|+..... +  .+.+|+..+++......++......+.|+|++++|+..+.++.+++|++.+++.
T Consensus        38 ~~~~~~S---pdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~  114 (396)
T 3c5m_A           38 FYQKCFT---QDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEE  114 (396)
T ss_dssp             TTSCCBC---TTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCE
T ss_pred             eecCcCC---CCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCc
Confidence            6777787   599998877553 3  566779888876544333332233367999999999999999999999988876


Q ss_pred             eeeec-cCCeEEE-------------------EEECCCCCEEEEe-----eCCCeEEEEECCCCCCCCeEecCCcccEEE
Q 024372           96 KHSFE-HKHIVRA-------------------CAFSEDTHLLLTG-----GFEKILRIFDLNRPDAPPREVGNSSGSIRT  150 (268)
Q Consensus        96 ~~~~~-~~~~v~~-------------------v~~~~~~~~l~s~-----~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~  150 (268)
                      ..... +......                   +.++|+++.++.+     ..+..|.+||+.+++.  .....+...+..
T Consensus       115 ~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~--~~~~~~~~~~~~  192 (396)
T 3c5m_A          115 QVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGEL--EVIHQDTAWLGH  192 (396)
T ss_dssp             EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCE--EEEEEESSCEEE
T ss_pred             EEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcE--EeeccCCccccc
Confidence            55544 2222222                   3467777766544     3567899999876542  222234456788


Q ss_pred             EEEeC-CCCcEEEEeeCC-----CeEEEEeCCCCceEEeecCC--CCEEEEEECCCCcEEEE-eC---C--CeEEEEeCC
Q 024372          151 VAWLH-SDQTILSSCTDS-----GGVRLWDARSGKIVQTLETK--SPVTSAEVSRDGRYITT-AD---G--SSVKFWDAN  216 (268)
Q Consensus       151 ~~~~~-~~~~~~~~~~~d-----~~i~iwd~~~~~~~~~~~~~--~~v~~~~~s~~g~~l~~-~~---~--~~v~~wd~~  216 (268)
                      +.|+| ++..++......     ..|.+||+..++........  ..+..+.|+|+|++|+. +.   .  +.|.+||+.
T Consensus       193 ~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~  272 (396)
T 3c5m_A          193 PIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPE  272 (396)
T ss_dssp             EEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTT
T ss_pred             ceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECC
Confidence            99999 555454443221     36889998776544433322  24778899999986543 32   1  349999998


Q ss_pred             CceeeeEEeCCCCceeeEEcCCCCCEEEecc----------------CCCeEEEEECCCCcE
Q 024372          217 HFGLVKGYNMPCNTESASLEPKLGNIFIAGG----------------EDMWVHVFDFHTGEQ  262 (268)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs----------------~d~~i~~wd~~~g~~  262 (268)
                      +.+.......+. . ...+++++|++++.++                .+..|++||+.+++.
T Consensus       273 ~g~~~~l~~~~~-~-~~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~  332 (396)
T 3c5m_A          273 TLENEEVMVMPP-C-SHLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA  332 (396)
T ss_dssp             TCCEEEEEECCS-E-EEEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC
T ss_pred             CCCeEEeeeCCC-C-CCCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce
Confidence            765443333332 2 2566663688877654                347899999987764

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.76  E-value=1.3e-15  Score=140.33  Aligned_cols=241  Identities=9%  Similarity=-0.041  Sum_probs=162.6

Q ss_pred             cCCCeeeEEEecCCCCCcEEEEEeCCC-----CeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCc-----
Q 024372           15 HSRPVVDLFYSPITPDGFFLVSASKDS-----SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFT-----   84 (268)
Q Consensus        15 h~~~v~~~~f~~~~~dg~~l~s~s~d~-----~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~-----   84 (268)
                      |+..+.+++|+   |||++||.++.++     +|++||+.+++.+.....+ ..+..++|+||++.|+.++.++.     
T Consensus       123 ~~~~~~~~~~S---PDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~  198 (710)
T 2xdw_A          123 GTVALRGYAFS---EDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSD  198 (710)
T ss_dssp             SCEEEEEEEEC---TTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCS
T ss_pred             CCEEEEEEEEC---CCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccc
Confidence            44457788888   4999999776644     8999999999876533222 23667899999999988887766     


Q ss_pred             -----------EEEEeCCCCCee--eeec---cCCeEEEEEECCCCCEEEEeeC-----CCeEEEEECCC------CCCC
Q 024372           85 -----------AKLWDALTGDEK--HSFE---HKHIVRACAFSEDTHLLLTGGF-----EKILRIFDLNR------PDAP  137 (268)
Q Consensus        85 -----------v~iw~~~~~~~~--~~~~---~~~~v~~v~~~~~~~~l~s~~~-----d~~i~~~d~~~------~~~~  137 (268)
                                 |++|++.+++..  ..+.   +...+..+.|+||++.|+.++.     +..+.+||+.+      +...
T Consensus       199 ~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~  278 (710)
T 2xdw_A          199 GTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILK  278 (710)
T ss_dssp             SSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCC
T ss_pred             ccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccc
Confidence                       999999887632  2222   3445778999999998887664     67899999875      3323


Q ss_pred             CeEecCCcccEEEEEEeCCCCcEEEEeeCC---CeEEEEeCCCCc--eEEe-ecCCC--CEEEEEECCCCcEEEEe-CCC
Q 024372          138 PREVGNSSGSIRTVAWLHSDQTILSSCTDS---GGVRLWDARSGK--IVQT-LETKS--PVTSAEVSRDGRYITTA-DGS  208 (268)
Q Consensus       138 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d---~~i~iwd~~~~~--~~~~-~~~~~--~v~~~~~s~~g~~l~~~-~~~  208 (268)
                      ...+..+...+.. .|++++..++..+..+   ..|.+||+.+++  ..+. +.+..  .+..+.+++++.++++. .++
T Consensus       279 ~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g  357 (710)
T 2xdw_A          279 WVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDV  357 (710)
T ss_dssp             CEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETT
T ss_pred             eEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECC
Confidence            3444444444444 4677787776665443   369999998764  2233 33333  47788998777776654 455


Q ss_pred             --eEEEEeCCCceeeeEEeCCCCc-eeeEEcCCCCC-EEEecc---CCCeEEEEECCCCc
Q 024372          209 --SVKFWDANHFGLVKGYNMPCNT-ESASLEPKLGN-IFIAGG---EDMWVHVFDFHTGE  261 (268)
Q Consensus       209 --~v~~wd~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~gs---~d~~i~~wd~~~g~  261 (268)
                        .|.+||+.+++.++.+..+... ..+.+.+ +++ ++++.+   ..+.|++||+.+|+
T Consensus       358 ~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~-d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          358 KNTLQLHDLATGALLKIFPLEVGSVVGYSGQK-KDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEEEEEETTTCCEEEEECCCSSEEEEEECCT-TCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEEEEEECCCCCEEEecCCCCceEEEEecCC-CCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence              4677888666666666655332 2344455 454 444433   35789999998887

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.75  E-value=2.4e-14  Score=119.50  Aligned_cols=240  Identities=10%  Similarity=0.027  Sum_probs=164.8

Q ss_pred             eeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCC----CcEEE
Q 024372           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD----FTAKL   87 (268)
Q Consensus        12 ~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D----~~v~i   87 (268)
                      +.++...+.+++|+   ++|+++++++.++.|.+||..+++....+..+...+..+++++++.++++...+    +.|.+
T Consensus        40 ~~~~~~~~~~~~~~---~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~  116 (333)
T 2dg1_A           40 ISKKGLQLEGLNFD---RQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFA  116 (333)
T ss_dssp             EESSCCCEEEEEEC---TTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEE
T ss_pred             EeccCccccCcEEC---CCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEE
Confidence            44566777899997   488888888999999999999888765554567789999999999888777666    68999


Q ss_pred             EeCCCCCeeeeec---cCCeEEEEEECCCCCEEEEeeC------CCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCC
Q 024372           88 WDALTGDEKHSFE---HKHIVRACAFSEDTHLLLTGGF------EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ  158 (268)
Q Consensus        88 w~~~~~~~~~~~~---~~~~v~~v~~~~~~~~l~s~~~------d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~  158 (268)
                      ||..++.....+.   ....+..+.++|+++++++...      .+.+..+|...++  .............+++++++.
T Consensus       117 ~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~i~~~~dg~  194 (333)
T 2dg1_A          117 ATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT--VTPIIQNISVANGIALSTDEK  194 (333)
T ss_dssp             ECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC--EEEEEEEESSEEEEEECTTSS
T ss_pred             EeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCE--EEEeecCCCcccceEECCCCC
Confidence            9998776543332   3456889999999998877653      2445555544322  222212223467889998877


Q ss_pred             cEEEEeeCCCeEEEEeCCC-CceEEe--------ecCCCCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeCCC
Q 024372          159 TILSSCTDSGGVRLWDARS-GKIVQT--------LETKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPC  228 (268)
Q Consensus       159 ~~~~~~~~d~~i~iwd~~~-~~~~~~--------~~~~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~~  228 (268)
                      .++++...++.|.+||+++ +..+..        +.....+..++++++|+++++. .++.|.+||.. .+.+..+..+.
T Consensus       195 ~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~  273 (333)
T 2dg1_A          195 VLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQILIPG  273 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEEEEECTT
T ss_pred             EEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCC-CCEEEEEEcCC
Confidence            6766666668999999964 333221        1222357889999999987765 56899999984 55666676553


Q ss_pred             -------CceeeEEcCCCCCEEEeccCC------CeEEEEECC
Q 024372          229 -------NTESASLEPKLGNIFIAGGED------MWVHVFDFH  258 (268)
Q Consensus       229 -------~~~~~~~~~~~~~~~~~gs~d------~~i~~wd~~  258 (268)
                             .+..+++.+ +++.|+.++.+      +.|+..+..
T Consensus       274 ~~~g~~~~~~~~~~~~-dg~~L~v~~~~g~~~~~~~l~~~~~~  315 (333)
T 2dg1_A          274 RDEGHMLRSTHPQFIP-GTNQLIICSNDIEMGGGSMLYTVNGF  315 (333)
T ss_dssp             GGGTCSCBCCEEEECT-TSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred             CccccccCcceEEECC-CCCEEEEEeCccCCCCCceEEEEecc
Confidence                   355667765 56555544333      245555543

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.75  E-value=2.9e-16  Score=133.37  Aligned_cols=243  Identities=10%  Similarity=-0.018  Sum_probs=166.4

Q ss_pred             eeecCCCeeeEEEecCCCCCcEEEEEe----------CCCCeEEeeCCCCCeEEEeeCc------cCcEEEEEecCCCcE
Q 024372           12 CHGHSRPVVDLFYSPITPDGFFLVSAS----------KDSSPMLRNGETGDWIGTFEGH------KGAVWSCCLDANALF   75 (268)
Q Consensus        12 ~~~h~~~v~~~~f~~~~~dg~~l~s~s----------~d~~i~iw~~~~~~~~~~~~~h------~~~V~~~~~~~~~~~   75 (268)
                      +..+..+  .++|+|   ||++|+.+.          .+++|.+||..+++.+.++..+      ......++++|++++
T Consensus        47 i~~g~~p--~i~~sp---dg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~  121 (361)
T 2oiz_A           47 VPTAFNG--HVQVSN---DGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKF  121 (361)
T ss_dssp             EECCEEE--EEEECT---TSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSE
T ss_pred             ecCCCCC--ceEECC---CCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCE
Confidence            3344445  788884   999999886          3677999999999988888632      234567899999999


Q ss_pred             EEEeeC--CCcEEEEeCCCCCeeee-eccCCeEEEEEECCCC-CEEEEeeCCCeEEEEECCCCCCCC-e-----EecCCc
Q 024372           76 SASGSA--DFTAKLWDALTGDEKHS-FEHKHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAPP-R-----EVGNSS  145 (268)
Q Consensus        76 l~s~s~--D~~v~iw~~~~~~~~~~-~~~~~~v~~v~~~~~~-~~l~s~~~d~~i~~~d~~~~~~~~-~-----~~~~~~  145 (268)
                      ++.++.  +++|.+||+.+++.+.. +....... +.+.|++ ..+++.+.|+.+.+|+........ .     .+....
T Consensus       122 l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~-v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~  200 (361)
T 2oiz_A          122 IVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWS-VIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKD  200 (361)
T ss_dssp             EEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEE-EEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTT
T ss_pred             EEEECCCCCCeEEEEECCCCcEEEEEecCCCcce-eEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCC
Confidence            887763  68999999999988877 76654422 4566754 677888889999988875322111 0     011111


Q ss_pred             ccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCce--EEeecCC-----------CCEEEEEECCCCcEEEEe-C-----
Q 024372          146 GSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI--VQTLETK-----------SPVTSAEVSRDGRYITTA-D-----  206 (268)
Q Consensus       146 ~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~--~~~~~~~-----------~~v~~~~~s~~g~~l~~~-~-----  206 (268)
                      .++ .+...+++..++.. +.++.|.++|+.....  +..+...           .....++++|+++.+... .     
T Consensus       201 ~~~-~~~~~~~g~~~~~~-~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~  278 (361)
T 2oiz_A          201 DPI-FIAPALDKDKAHFV-SYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKE  278 (361)
T ss_dssp             SCB-CSCCEECSSEEEEE-BTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCT
T ss_pred             Cce-EEEecccCCEEEEE-eCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCc
Confidence            111 11223444444444 4568999999975532  2222110           111237899997765432 2     


Q ss_pred             ------CCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEECCCC--cEEee
Q 024372          207 ------GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTG--EQIAI  265 (268)
Q Consensus       207 ------~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g--~~~~~  265 (268)
                            ...|.+||+.+.+.++++.... +..+.+++ +|+++++++. +.|++||.+++  +.++.
T Consensus       279 ~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~sp-dg~~l~v~n~-~~v~v~D~~t~~l~~~~~  342 (361)
T 2oiz_A          279 GTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQ-QRNLMLTLDG-GNVNVYDISQPEPKLLRT  342 (361)
T ss_dssp             TCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEET-TTTEEEEECS-SCEEEEECSSSSCEEEEE
T ss_pred             ccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECC-CCCEEEEeCC-CeEEEEECCCCcceeeEE
Confidence                  2489999999999999998877 88888888 5888887776 89999999999  88765

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.75  E-value=9.9e-16  Score=128.31  Aligned_cols=237  Identities=8%  Similarity=0.011  Sum_probs=168.2

Q ss_pred             CeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeee
Q 024372           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKH   97 (268)
Q Consensus        18 ~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~   97 (268)
                      ...++.+.    ++++.++...++++.++|..+++.+.++.. ......+++++++...++...++.|.+||..+++...
T Consensus        45 ~~~~i~~~----~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~  119 (328)
T 3dsm_A           45 VAQSMVIR----DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITG  119 (328)
T ss_dssp             CEEEEEEE----TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEE
T ss_pred             cceEEEEE----CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEE
Confidence            34567775    456666777789999999999999988863 4567889998888666666589999999999988777


Q ss_pred             eeccCC------eEEEEEECCCCCEEEEee--CCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCC--
Q 024372           98 SFEHKH------IVRACAFSEDTHLLLTGG--FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS--  167 (268)
Q Consensus        98 ~~~~~~------~v~~v~~~~~~~~l~s~~--~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d--  167 (268)
                      .+....      ....+++ .++ .++.+.  .++.|.++|+.+.+.. ..+... .....+.+.+++. +++++..+  
T Consensus       120 ~i~~g~~~~~~~~p~~i~~-~~~-~lyv~~~~~~~~v~viD~~t~~~~-~~i~~g-~~p~~i~~~~dG~-l~v~~~~~~~  194 (328)
T 3dsm_A          120 YIECPDMDMESGSTEQMVQ-YGK-YVYVNCWSYQNRILKIDTETDKVV-DELTIG-IQPTSLVMDKYNK-MWTITDGGYE  194 (328)
T ss_dssp             EEECTTCCTTTCBCCCEEE-ETT-EEEEEECTTCCEEEEEETTTTEEE-EEEECS-SCBCCCEECTTSE-EEEEBCCBCT
T ss_pred             EEEcCCccccCCCcceEEE-ECC-EEEEEcCCCCCEEEEEECCCCeEE-EEEEcC-CCccceEEcCCCC-EEEEECCCcc
Confidence            665443      4455666 344 444444  4889999998765432 222211 2234567777665 55555443  


Q ss_pred             --------CeEEEEeCCCCceEEeecC--CCCEEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEE--eC-CCCceeeE
Q 024372          168 --------GGVRLWDARSGKIVQTLET--KSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGY--NM-PCNTESAS  234 (268)
Q Consensus       168 --------~~i~iwd~~~~~~~~~~~~--~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~--~~-~~~~~~~~  234 (268)
                              +.|.++|.++++....+..  ...+..++++|+++++..++. .|.+||..+.+.....  .. ...+..++
T Consensus       195 ~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~gi~  273 (328)
T 3dsm_A          195 GSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVRPFLEFRDTKYYGLT  273 (328)
T ss_dssp             TCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSSCSBCCCSSCEEEEE
T ss_pred             CCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc-EEEEEECCCCceeeeeeecCCCCceEEEE
Confidence                    7899999999988777654  235789999999988766654 8999999876543211  11 13456677


Q ss_pred             EcCCCCCEEEec----cCCCeEEEEECCCCcEEeec
Q 024372          235 LEPKLGNIFIAG----GEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       235 ~~~~~~~~~~~g----s~d~~i~~wd~~~g~~~~~~  266 (268)
                      +.|..+.++++.    ..++.|++||.. |+.+..+
T Consensus       274 vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i  308 (328)
T 3dsm_A          274 VNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEF  308 (328)
T ss_dssp             ECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEE
T ss_pred             EcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEE
Confidence            777678888887    778999999987 8887653

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.75  E-value=1.2e-15  Score=129.48  Aligned_cols=229  Identities=12%  Similarity=0.133  Sum_probs=147.7

Q ss_pred             EEEEEeCC--CCeEEe--eCCCCCeE--EEee-CccCcEEEEEecCCCcEEEEeeCCCcEEEEeCC-CCCeeeeeccC--
Q 024372           33 FLVSASKD--SSPMLR--NGETGDWI--GTFE-GHKGAVWSCCLDANALFSASGSADFTAKLWDAL-TGDEKHSFEHK--  102 (268)
Q Consensus        33 ~l~s~s~d--~~i~iw--~~~~~~~~--~~~~-~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~-~~~~~~~~~~~--  102 (268)
                      +|+.|+..  +.|.+|  |..+|++.  .... ++...+..++|+|+++++++++.+ .+.+|++. +++......+.  
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~   82 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG   82 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence            34555543  446655  45566543  2221 233467789999999999888888 99999987 66654433321  


Q ss_pred             CeEEEEEECCCCCE--EEEee-------------CCCeEEEEECCCCCCCCeEec----CCcccEEEEEEeCCCCcEEEE
Q 024372          103 HIVRACAFSEDTHL--LLTGG-------------FEKILRIFDLNRPDAPPREVG----NSSGSIRTVAWLHSDQTILSS  163 (268)
Q Consensus       103 ~~v~~v~~~~~~~~--l~s~~-------------~d~~i~~~d~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~  163 (268)
                      .....++|+|+++.  ++++.             .++.+.+|++...........    .+...+..++|+|++..++++
T Consensus        83 g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~  162 (365)
T 1jof_A           83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA  162 (365)
T ss_dssp             SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred             CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEE
Confidence            22445789999984  55553             689999999863222212221    234568899999998877666


Q ss_pred             eeCCCeEEEEeCC-CCceE--Eeec---CCCCEEEEEECCCCcEEEE-e-CCCeEEEEeCC--Cceee---eEEe-CCC-
Q 024372          164 CTDSGGVRLWDAR-SGKIV--QTLE---TKSPVTSAEVSRDGRYITT-A-DGSSVKFWDAN--HFGLV---KGYN-MPC-  228 (268)
Q Consensus       164 ~~~d~~i~iwd~~-~~~~~--~~~~---~~~~v~~~~~s~~g~~l~~-~-~~~~v~~wd~~--~~~~~---~~~~-~~~-  228 (268)
                      ...++.|++||+. +++..  ..+.   +...+..++|+|+|+++.. . .++.|.+|++.  +++..   ..+. .+. 
T Consensus       163 ~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~  242 (365)
T 1jof_A          163 DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPG  242 (365)
T ss_dssp             ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTT
T ss_pred             cCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCC
Confidence            5556899999998 77643  3343   2345889999999988754 3 36799999764  34332   2222 221 


Q ss_pred             ------------CceeeE-EcCCCCCEEEeccCC-C-----eEEEEECC-CCcEE
Q 024372          229 ------------NTESAS-LEPKLGNIFIAGGED-M-----WVHVFDFH-TGEQI  263 (268)
Q Consensus       229 ------------~~~~~~-~~~~~~~~~~~gs~d-~-----~i~~wd~~-~g~~~  263 (268)
                                  ....+. ++| +|++|+++..+ .     .|.+|++. +|+..
T Consensus       243 ~~g~~~~~~~~~~~~~i~~~sp-dG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~  296 (365)
T 1jof_A          243 IPDRDPETGKGLYRADVCALTF-SGKYMFASSRANKFELQGYIAGFKLRDCGSIE  296 (365)
T ss_dssp             CCCBCTTTSSBSEEEEEEEECT-TSSEEEEEEEESSTTSCCEEEEEEECTTSCEE
T ss_pred             cCCcccccccccccccEEEECC-CCCEEEEECCCCCCCCCCeEEEEEECCCCCEE
Confidence                        234566 666 68877765432 2     89999986 67654

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.75  E-value=9.1e-16  Score=128.18  Aligned_cols=239  Identities=14%  Similarity=0.063  Sum_probs=167.4

Q ss_pred             CCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCee
Q 024372           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEK   96 (268)
Q Consensus        17 ~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~   96 (268)
                      ..|.+++|+|   ++..++..+.+++++.|   .++....+..+...+..++|++++.+++++..++.|.+||..++...
T Consensus         6 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~   79 (333)
T 2dg1_A            6 QDLPTLFYSG---KSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK   79 (333)
T ss_dssp             CCCCBCCSCG---GGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE
T ss_pred             cccceeeecC---CccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEE
Confidence            4578888986   66677777889999999   45667778778788899999999998888888999999999887765


Q ss_pred             eee-ccCCeEEEEEECCCCCEEEEeeCC----CeEEEEECCCCCCCCeEec--CCcccEEEEEEeCCCCcEEEEeeC---
Q 024372           97 HSF-EHKHIVRACAFSEDTHLLLTGGFE----KILRIFDLNRPDAPPREVG--NSSGSIRTVAWLHSDQTILSSCTD---  166 (268)
Q Consensus        97 ~~~-~~~~~v~~v~~~~~~~~l~s~~~d----~~i~~~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~---  166 (268)
                      ... .+...+..++++++++++++...+    +.|.+||....... ....  .....+..+++.+++. ++++...   
T Consensus        80 ~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~  157 (333)
T 2dg1_A           80 RPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ-DIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYS  157 (333)
T ss_dssp             EEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE-EEECSSSSCCCEEEEEECTTSC-EEEEECCCBT
T ss_pred             EEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEE-EEEccCccCCcccceEECCCCC-EEEEeccccc
Confidence            544 456679999999999988877666    68999998654321 1211  2334678899888765 4444432   


Q ss_pred             ---CCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEE-EEe-CCCeEEEEeCCC-ceeeeEE------eCC--CCcee
Q 024372          167 ---SGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYI-TTA-DGSSVKFWDANH-FGLVKGY------NMP--CNTES  232 (268)
Q Consensus       167 ---d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l-~~~-~~~~v~~wd~~~-~~~~~~~------~~~--~~~~~  232 (268)
                         .+.|..+|..+++..........+..++++|+|+++ ++. .++.|.+||+.. ...+..+      ...  ..+..
T Consensus       158 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~  237 (333)
T 2dg1_A          158 TNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDS  237 (333)
T ss_dssp             TBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEE
T ss_pred             cCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCc
Confidence               256777777766554433333457899999999854 343 467999999853 2222211      111  12344


Q ss_pred             eEEcCCCCCEEEeccCCCeEEEEECCCCcEEee
Q 024372          233 ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       233 ~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~  265 (268)
                      +++.+ +|.++++...++.|++||. +|+.+..
T Consensus       238 i~~d~-~G~l~v~~~~~~~v~~~d~-~g~~~~~  268 (333)
T 2dg1_A          238 CCIDS-DDNLYVAMYGQGRVLVFNK-RGYPIGQ  268 (333)
T ss_dssp             EEEBT-TCCEEEEEETTTEEEEECT-TSCEEEE
T ss_pred             eEECC-CCCEEEEEcCCCEEEEECC-CCCEEEE
Confidence            56666 5888888777889999998 4665544

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.74  E-value=2.7e-16  Score=133.93  Aligned_cols=234  Identities=9%  Similarity=0.001  Sum_probs=155.1

Q ss_pred             eEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEE-------------------EEecCCCcEEEEe--
Q 024372           21 DLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWS-------------------CCLDANALFSASG--   79 (268)
Q Consensus        21 ~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~-------------------~~~~~~~~~l~s~--   79 (268)
                      .+.|+   |||++|+.++.++.+.+|+..+++....+..+.+....                   +.++|++..++..  
T Consensus        85 ~~~~s---pdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~  161 (396)
T 3c5m_A           85 GGFIS---TDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEF  161 (396)
T ss_dssp             TCEEC---TTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHH
T ss_pred             cceEC---CCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeee
Confidence            36777   59999999999999999999998876655555543333                   3456777665433  


Q ss_pred             ---eCCCcEEEEeCCCCCeeeeeccCCeEEEEEECC-CCCEEEEeeCC------CeEEEEECCCCCCCCeEecCC--ccc
Q 024372           80 ---SADFTAKLWDALTGDEKHSFEHKHIVRACAFSE-DTHLLLTGGFE------KILRIFDLNRPDAPPREVGNS--SGS  147 (268)
Q Consensus        80 ---s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~s~~~d------~~i~~~d~~~~~~~~~~~~~~--~~~  147 (268)
                         ..+..|++||+.+++......+...+..+.|+| +++.++..+.+      ..|.+||+..+.  ......+  ...
T Consensus       162 ~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~--~~~l~~~~~~~~  239 (396)
T 3c5m_A          162 YHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN--VRKIKEHAEGES  239 (396)
T ss_dssp             HHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC--CEESSCCCTTEE
T ss_pred             ccCCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc--eeEeeccCCCcc
Confidence               456789999999888766666777788999999 78767665543      357788875432  2222222  235


Q ss_pred             EEEEEEeCCCCcEEEEeeCC----CeEEEEeCCCCceEEeecCCCCEEEEEECC-CCcEEEEe-----------------
Q 024372          148 IRTVAWLHSDQTILSSCTDS----GGVRLWDARSGKIVQTLETKSPVTSAEVSR-DGRYITTA-----------------  205 (268)
Q Consensus       148 v~~~~~~~~~~~~~~~~~~d----~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~-----------------  205 (268)
                      +..+.|+|++..++.++.++    +.|++||+.+++........ ... +.|+| +|++++.+                 
T Consensus       240 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~  317 (396)
T 3c5m_A          240 CTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIE  317 (396)
T ss_dssp             EEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC-SEE-EEEECSSSSEEEEEECCC----------CCC
T ss_pred             ccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC-CCC-CCccCCCCceEEEecCCcceeeccccccccC
Confidence            77789999988776654432    34999999988765433222 233 88999 99987653                 


Q ss_pred             CCCeEEEEeCCCceeeeEEeCCC-----------CceeeEEcCCCCCEEEeccC-CC--eEEEEECCCCcE
Q 024372          206 DGSSVKFWDANHFGLVKGYNMPC-----------NTESASLEPKLGNIFIAGGE-DM--WVHVFDFHTGEQ  262 (268)
Q Consensus       206 ~~~~v~~wd~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~gs~-d~--~i~~wd~~~g~~  262 (268)
                      .+..|.+||+.............           ......+++ +|+.|+.++. ++  .|+++|+.++++
T Consensus       318 ~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~s~~~~~~~l~~~~~~~~~~  387 (396)
T 3c5m_A          318 NDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTP-NDDGVLFTSDFEGVPAIYIADVPESYK  387 (396)
T ss_dssp             CCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECT-TSSEEEEEECTTSSCEEEEEECCTTCC
T ss_pred             CCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEcc-CCCeEEEEecCCCCceEEEEEEccccc
Confidence            23689999997765433222222           133456676 5877776543 44  466666665554

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.72  E-value=5.4e-16  Score=143.46  Aligned_cols=246  Identities=10%  Similarity=0.003  Sum_probs=155.0

Q ss_pred             EeeecCCCe-----eeEEEecCCCCCcEEEEEeCCCC---------eEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEE
Q 024372           11 VCHGHSRPV-----VDLFYSPITPDGFFLVSASKDSS---------PMLRNGETGDWIGTFEGHKGAVWSCCLDANALFS   76 (268)
Q Consensus        11 ~~~~h~~~v-----~~~~f~~~~~dg~~l~s~s~d~~---------i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l   76 (268)
                      ++.+|....     .+++|+   |||++|+.++.+++         +.+||+.++++. .+..|.+.+...+|+|||+.|
T Consensus        51 ~~~~~~~~~~~~~~~~~~~S---pdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~l  126 (740)
T 4a5s_A           51 FLENSTFDEFGHSINDYSIS---PDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKL  126 (740)
T ss_dssp             EECTTTTTTCCSCCCEEEEC---TTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCE
T ss_pred             EEechhhhhhcccccceEEC---CCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEE
Confidence            345565432     236666   59999999998754         459999999765 477788899999999999999


Q ss_pred             EEeeCCCcEEEEeCCCCCeeeeec--cCCeE-----------------EEEEECCCCCEEEEeeCCC-------------
Q 024372           77 ASGSADFTAKLWDALTGDEKHSFE--HKHIV-----------------RACAFSEDTHLLLTGGFEK-------------  124 (268)
Q Consensus        77 ~s~s~D~~v~iw~~~~~~~~~~~~--~~~~v-----------------~~v~~~~~~~~l~s~~~d~-------------  124 (268)
                      |.++ |+.|++|++.++...+...  +...+                 ..+.|||||+.|+.++.|.             
T Consensus       127 a~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~  205 (740)
T 4a5s_A          127 AYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSD  205 (740)
T ss_dssp             EEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCS
T ss_pred             EEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecC
Confidence            8874 7899999998877544221  11112                 3488999999999875332             


Q ss_pred             -----------------------eEEEEECCC---CCC-CCeEec------CCcccEEEEEEeCCCCcEEEEeeC---CC
Q 024372          125 -----------------------ILRIFDLNR---PDA-PPREVG------NSSGSIRTVAWLHSDQTILSSCTD---SG  168 (268)
Q Consensus       125 -----------------------~i~~~d~~~---~~~-~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~~---d~  168 (268)
                                             .+++||+.+   ++. ......      .+...+..++|+|++..++.....   +.
T Consensus       206 ~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~  285 (740)
T 4a5s_A          206 ESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYS  285 (740)
T ss_dssp             TTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEE
T ss_pred             CCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEE
Confidence                                   477888876   421 122222      256678899999988754444322   23


Q ss_pred             eEEEEeCCCCc----eEEe--e--c-CCCCE-----EEEEECCCCcEEE--EeC-C--CeEEEEeCCCceeeeEEeCCCC
Q 024372          169 GVRLWDARSGK----IVQT--L--E-TKSPV-----TSAEVSRDGRYIT--TAD-G--SSVKFWDANHFGLVKGYNMPCN  229 (268)
Q Consensus       169 ~i~iwd~~~~~----~~~~--~--~-~~~~v-----~~~~~s~~g~~l~--~~~-~--~~v~~wd~~~~~~~~~~~~~~~  229 (268)
                      .|++||+.+++    +...  +  + +...+     ....|+|||+.++  .++ +  ..|.+||+........-...-.
T Consensus       286 ~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~  365 (740)
T 4a5s_A          286 VMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWE  365 (740)
T ss_dssp             EEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSC
T ss_pred             EEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccCCEE
Confidence            79999999887    3221  1  2 22222     3678999998654  332 3  4688899876543332222222


Q ss_pred             ceeeEEcCCCCCEEEeccC--C----CeEEEEECCCCcE
Q 024372          230 TESASLEPKLGNIFIAGGE--D----MWVHVFDFHTGEQ  262 (268)
Q Consensus       230 ~~~~~~~~~~~~~~~~gs~--d----~~i~~wd~~~g~~  262 (268)
                      .... ..++.+.++.+++.  +    ..|+..++..++.
T Consensus       366 v~~~-~~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~  403 (740)
T 4a5s_A          366 VIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTK  403 (740)
T ss_dssp             EEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTEEEE
T ss_pred             EEEE-EEEeCCEEEEEEecCCCCCceeEEEEEECCCCCc
Confidence            2222 22333444445554  2    3565556554443

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.71  E-value=1e-14  Score=119.21  Aligned_cols=195  Identities=12%  Similarity=0.214  Sum_probs=143.6

Q ss_pred             cCCCeeeEEEecCCCCCcEEEEEeC-CCCeEEeeCCCCCeEEEeeC-ccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCC
Q 024372           15 HSRPVVDLFYSPITPDGFFLVSASK-DSSPMLRNGETGDWIGTFEG-HKGAVWSCCLDANALFSASGSADFTAKLWDALT   92 (268)
Q Consensus        15 h~~~v~~~~f~~~~~dg~~l~s~s~-d~~i~iw~~~~~~~~~~~~~-h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~   92 (268)
                      |...+.++++.+  ++|.++++... ++.|.+|+ .+++.+..+.. +...+..+++++++.++++...++.|++|+.. 
T Consensus        75 ~~~~p~~i~~~~--~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-  150 (286)
T 1q7f_A           75 QLLYPNRVAVVR--NSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-  150 (286)
T ss_dssp             CBSSEEEEEEET--TTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred             cccCceEEEEEc--CCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-
Confidence            445778899853  47777766643 88999999 67887777753 44678999999999988888888999999964 


Q ss_pred             CCeeeeec---cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCC--cccEEEEEEeCCCCcEEEEeeCC
Q 024372           93 GDEKHSFE---HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNS--SGSIRTVAWLHSDQTILSSCTDS  167 (268)
Q Consensus        93 ~~~~~~~~---~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~d  167 (268)
                      +.....+.   +...+..++++++++++++...++.|++||... . ....+...  ......+++.+++ .++++...+
T Consensus       151 g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~-~~~~~~~~g~~~~p~~i~~d~~G-~l~v~~~~~  227 (286)
T 1q7f_A          151 GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG-Q-YLRQIGGEGITNYPIGVGINSNG-EILIADNHN  227 (286)
T ss_dssp             SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC-C-EEEEESCTTTSCSEEEEEECTTC-CEEEEECSS
T ss_pred             CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCC-C-EEEEEccCCccCCCcEEEECCCC-CEEEEeCCC
Confidence            45555553   334578999999999888888899999999743 2 22233222  2457788988876 566666655


Q ss_pred             C-eEEEEeCCCCceEEeecCC---CCEEEEEECCCCcEEEEeCCCeEEEEeCCC
Q 024372          168 G-GVRLWDARSGKIVQTLETK---SPVTSAEVSRDGRYITTADGSSVKFWDANH  217 (268)
Q Consensus       168 ~-~i~iwd~~~~~~~~~~~~~---~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~  217 (268)
                      + .|++||. +++.+..+...   ..+..++++|+|++++++.++.|++|+...
T Consensus       228 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~~  280 (286)
T 1q7f_A          228 NFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQ  280 (286)
T ss_dssp             SCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECSC
T ss_pred             CEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEECCCCeEEEEEccc
Confidence            5 9999995 46666665432   237799999999988887789999999754

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.71  E-value=9.8e-15  Score=119.36  Aligned_cols=228  Identities=12%  Similarity=0.089  Sum_probs=163.9

Q ss_pred             CCcEEEEEeCCCCeEEeeCCCCCeEEEeeCcc-CcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeeccC--CeEE
Q 024372           30 DGFFLVSASKDSSPMLRNGETGDWIGTFEGHK-GAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHK--HIVR  106 (268)
Q Consensus        30 dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~-~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~--~~v~  106 (268)
                      .+++|++++.|+.|.+||.++|+.+-++..+. ..+..+.+.|++.+++  +.++.|+.||. +++.+..+...  ..+.
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~   80 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ   80 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence            36799999999999999999999999998776 4788899999999988  35788999999 78888887643  4788


Q ss_pred             EEEECCCCCEEEEeeC-CCeEEEEECCCCCCCCeEec-----CCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCce
Q 024372          107 ACAFSEDTHLLLTGGF-EKILRIFDLNRPDAPPREVG-----NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI  180 (268)
Q Consensus       107 ~v~~~~~~~~l~s~~~-d~~i~~~d~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~  180 (268)
                      ++.+.++++++++.+. ++.+..+|. .++.......     .+......+...+++. ++++...++.|..||.. |+.
T Consensus        81 ~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~-~lv~~~~~~~v~~~d~~-G~~  157 (276)
T 3no2_A           81 TARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGN-YLVPLFATSEVREIAPN-GQL  157 (276)
T ss_dssp             EEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSC-EEEEETTTTEEEEECTT-SCE
T ss_pred             ccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCC-EEEEecCCCEEEEECCC-CCE
Confidence            8999999999998876 666766765 3332111110     1111233345566554 56666778999999998 999


Q ss_pred             EEeecCCCCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeCCC-C------ceeeEEcCCCCCEEEeccCC---
Q 024372          181 VQTLETKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPC-N------TESASLEPKLGNIFIAGGED---  249 (268)
Q Consensus       181 ~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~gs~d---  249 (268)
                      +.++.....+.++.+.++|++++++ .++.|..+|..+++.+..+.... .      +......+ +|.++++.+..   
T Consensus       158 ~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~-~G~i~v~~~~g~~~  236 (276)
T 3no2_A          158 LNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQ-NGGLYICNWQGHDR  236 (276)
T ss_dssp             EEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECT-TSCEEEEEECTTCT
T ss_pred             EEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcC-CCCEEEEeccCccc
Confidence            9988766566778889999988765 45689999999898888876321 1      22333344 68888876321   


Q ss_pred             -----CeEEEEEC-CCCcEEe
Q 024372          250 -----MWVHVFDF-HTGEQIA  264 (268)
Q Consensus       250 -----~~i~~wd~-~~g~~~~  264 (268)
                           +..+++++ .+|+.+=
T Consensus       237 ~~~~~~~~~~~~~~~~g~~~W  257 (276)
T 3no2_A          237 EAGKGKHPQLVEIDSEGKVVW  257 (276)
T ss_dssp             TGGGSCCCSEEEECTTSBEEE
T ss_pred             cccccCCceEEEECCCCCEEE
Confidence                 23455555 4566653

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.70  E-value=5.5e-15  Score=135.80  Aligned_cols=238  Identities=10%  Similarity=-0.049  Sum_probs=154.0

Q ss_pred             ecCCCeeeEEEecCCCCCcEEE-----EEeCCCCeEEeeCCCCCeEEEeeCccCcE--EEEEecCCCcEEEEeeCCCc--
Q 024372           14 GHSRPVVDLFYSPITPDGFFLV-----SASKDSSPMLRNGETGDWIGTFEGHKGAV--WSCCLDANALFSASGSADFT--   84 (268)
Q Consensus        14 ~h~~~v~~~~f~~~~~dg~~l~-----s~s~d~~i~iw~~~~~~~~~~~~~h~~~V--~~~~~~~~~~~l~s~s~D~~--   84 (268)
                      +|+..+.+++|+   |||++||     .|+.+.+|++||+.+|+.+.  ..+...+  ..++|+||++.|+.++.|..  
T Consensus       118 ~~~~~~~~~~~S---PDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~  192 (695)
T 2bkl_A          118 DGTVSLGTWAVS---WDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPS  192 (695)
T ss_dssp             SSCEEEEEEEEC---TTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTT
T ss_pred             CCCEEEEEEEEC---CCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCC
Confidence            455568888998   4999999     55666789999999998651  1122222  57889999999999888776  


Q ss_pred             -----------EEEEeCCCCCe--eeeec---cCCeEEEEEECCCCCEEEEeeCCC----eEEEEECCCCCCCCeEecCC
Q 024372           85 -----------AKLWDALTGDE--KHSFE---HKHIVRACAFSEDTHLLLTGGFEK----ILRIFDLNRPDAPPREVGNS  144 (268)
Q Consensus        85 -----------v~iw~~~~~~~--~~~~~---~~~~v~~v~~~~~~~~l~s~~~d~----~i~~~d~~~~~~~~~~~~~~  144 (268)
                                 |++|++.++..  ...+.   +...+..+.|+|+|+.|+.++.++    .+.+++...+  ....+..+
T Consensus       193 ~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~--~~~~l~~~  270 (695)
T 2bkl_A          193 IKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK--DFRLLVKG  270 (695)
T ss_dssp             SCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS--SCEEEEEC
T ss_pred             CccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC--ceEEeecC
Confidence                       99999988763  22222   335688899999999888877665    5666665433  23333333


Q ss_pred             cccEEEEEEeCCCCcEEEEee---CCCeEEEEeCCCCce---EEeecC--CCCEEEEEECCCCcEEEE-eCCCeEEEEeC
Q 024372          145 SGSIRTVAWLHSDQTILSSCT---DSGGVRLWDARSGKI---VQTLET--KSPVTSAEVSRDGRYITT-ADGSSVKFWDA  215 (268)
Q Consensus       145 ~~~v~~~~~~~~~~~~~~~~~---~d~~i~iwd~~~~~~---~~~~~~--~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~  215 (268)
                      ...+....+ +++. +++.+.   .++.|.+||+.+++.   ...+.+  ...+..++++ ++.++++ ..++..++|.+
T Consensus       271 ~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~  347 (695)
T 2bkl_A          271 VGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVA  347 (695)
T ss_dssp             SSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred             CCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEE
Confidence            344455555 5566 555544   247899999987753   333333  2347778888 5555554 46777777654


Q ss_pred             C-CceeeeEEeCCC-C-ceeeEEcCCCCCEEE-e---ccCCCeEEEEECCCCcE
Q 024372          216 N-HFGLVKGYNMPC-N-TESASLEPKLGNIFI-A---GGEDMWVHVFDFHTGEQ  262 (268)
Q Consensus       216 ~-~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~-~---gs~d~~i~~wd~~~g~~  262 (268)
                      . .++.++.+..+. . ...+.+.+ +++.++ +   ....+.|++||+.+|+.
T Consensus       348 ~~~g~~~~~l~~~~~~~v~~~~~s~-d~~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          348 TLKGKPVRTVQLPGVGAASNLMGLE-DLDDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             ETTCCEEEECCCSSSSEECCCBSCT-TCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             eCCCCeeEEecCCCCeEEEEeecCC-CCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            3 234444444432 2 22334455 465555 3   33467899999988874

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.70  E-value=3.4e-14  Score=114.92  Aligned_cols=238  Identities=10%  Similarity=-0.078  Sum_probs=159.4

Q ss_pred             CeeeEEEecCCCCCcEEE-EEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCee
Q 024372           18 PVVDLFYSPITPDGFFLV-SASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEK   96 (268)
Q Consensus        18 ~v~~~~f~~~~~dg~~l~-s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~   96 (268)
                      ...+++++|   +|++.+ +.+.++.|.+|+..++........+...+..+++++++.++++.. ++.|.+||.......
T Consensus        25 ~p~~i~~~~---~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~  100 (270)
T 1rwi_B           25 SPSGVAVDS---AGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT  100 (270)
T ss_dssp             CEEEEEECT---TCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE
T ss_pred             CccceEECC---CCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe
Confidence            566888874   788777 557888999998766543322223345677899999988777666 889999998765443


Q ss_pred             eee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeC
Q 024372           97 HSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA  175 (268)
Q Consensus        97 ~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~  175 (268)
                      ... .....+..+.++++++++++...++.|..|+....... ............+++.+++. ++++...++.|.+||.
T Consensus       101 ~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~-~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~  178 (270)
T 1rwi_B          101 VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT-VLPFTGLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEA  178 (270)
T ss_dssp             ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCE-ECCCCSCCSCCCEEECTTCC-EEEEEGGGTEEEEECT
T ss_pred             eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeE-eeccccCCCceeEEEeCCCC-EEEEECCCCEEEEEec
Confidence            222 12246788999999998887777889999976432211 11111122456788887665 6666555689999999


Q ss_pred             CCCceEEeecC-CCCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeCC-CCceeeEEcCCCCCEEEeccCCCeE
Q 024372          176 RSGKIVQTLET-KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMP-CNTESASLEPKLGNIFIAGGEDMWV  252 (268)
Q Consensus       176 ~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~gs~d~~i  252 (268)
                      ........... ...+..++++++|.++++. .++.|..||............. ..+..+++.+ +|+++++.+.++.|
T Consensus       179 ~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~v  257 (270)
T 1rwi_B          179 ESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDS-DRTVYVADRGNDRV  257 (270)
T ss_dssp             TTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECT-TCCEEEEEGGGTEE
T ss_pred             CCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECC-CCCEEEEECCCCEE
Confidence            87765543322 2568899999999877765 4678999998654322211111 2345666666 58888898999999


Q ss_pred             EEEECCCCcE
Q 024372          253 HVFDFHTGEQ  262 (268)
Q Consensus       253 ~~wd~~~g~~  262 (268)
                      ++|+....+.
T Consensus       258 ~~~~~~~~~~  267 (270)
T 1rwi_B          258 VKLTSLEHHH  267 (270)
T ss_dssp             EEECCCGGGS
T ss_pred             EEEcCCCccc
Confidence            9999876554

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.68  E-value=2.8e-13  Score=121.26  Aligned_cols=228  Identities=14%  Similarity=0.139  Sum_probs=168.9

Q ss_pred             CCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCC--CCCeeeeeccCCeEEE
Q 024372           30 DGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL--TGDEKHSFEHKHIVRA  107 (268)
Q Consensus        30 dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~--~~~~~~~~~~~~~v~~  107 (268)
                      ++.++++...++++.++|..+++.+.++... ..+..+.|+||+++++.++.|+.|.+||+.  +.+.+..+........
T Consensus       166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~  244 (567)
T 1qks_A          166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARS  244 (567)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEE
T ss_pred             CceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCce
Confidence            5567778888999999999999999988743 356689999999999989999999999995  7777777776666788


Q ss_pred             EEEC----CCCCEEEEee-CCCeEEEEECCCCCCCCeEecC-----------CcccEEEEEEeCCCCcEEEEeeCCCeEE
Q 024372          108 CAFS----EDTHLLLTGG-FEKILRIFDLNRPDAPPREVGN-----------SSGSIRTVAWLHSDQTILSSCTDSGGVR  171 (268)
Q Consensus       108 v~~~----~~~~~l~s~~-~d~~i~~~d~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~~~~~~~~d~~i~  171 (268)
                      +.|+    |+++++++++ .++.+.++|..+.+.. ..+..           ....+..+..+++++.+++...+.|.|.
T Consensus       245 ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~-~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~  323 (567)
T 1qks_A          245 IETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPK-KIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKIL  323 (567)
T ss_dssp             EEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEE-EEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred             eEEccccCCCCCEEEEEEccCCeEEEEECCCCcEE-EEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEE
Confidence            9999    6999888776 4599999997654322 22211           1124566777787777777777779999


Q ss_pred             EEeCCCCceE--EeecCCCCEEEEEECCCCcEEEEe--CCCeEEEEeCCCceeeeEEeC-CCCc---eeeEE-cCCCCCE
Q 024372          172 LWDARSGKIV--QTLETKSPVTSAEVSRDGRYITTA--DGSSVKFWDANHFGLVKGYNM-PCNT---ESASL-EPKLGNI  242 (268)
Q Consensus       172 iwd~~~~~~~--~~~~~~~~v~~~~~s~~g~~l~~~--~~~~v~~wd~~~~~~~~~~~~-~~~~---~~~~~-~~~~~~~  242 (268)
                      ++|....+.+  ..+........+.|+|+|+++..+  .++.|.++|+.+++.+..... ...+   ....+ .|+.+..
T Consensus       324 ~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v  403 (567)
T 1qks_A          324 LVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPV  403 (567)
T ss_dssp             EEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEE
T ss_pred             EEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcE
Confidence            9999876543  334444457789999999987543  467999999999988777765 2221   22233 4534566


Q ss_pred             EEecc-CCCeEEEEECCC
Q 024372          243 FIAGG-EDMWVHVFDFHT  259 (268)
Q Consensus       243 ~~~gs-~d~~i~~wd~~~  259 (268)
                      ++++. .++.|.++|..+
T Consensus       404 ~~t~~~g~~~Vsvid~~~  421 (567)
T 1qks_A          404 WATSHMGDDSVALIGTDP  421 (567)
T ss_dssp             EEEEBSSSSEEEEEECCT
T ss_pred             EEeCCCCCCeEEEecCCC
Confidence            66654 468899999877

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.68  E-value=2e-14  Score=120.50  Aligned_cols=224  Identities=12%  Similarity=0.053  Sum_probs=142.6

Q ss_pred             CeeeEEEecCCCCCcEEEEEeCCC---C--eEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCC----------
Q 024372           18 PVVDLFYSPITPDGFFLVSASKDS---S--PMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD----------   82 (268)
Q Consensus        18 ~v~~~~f~~~~~dg~~l~s~s~d~---~--i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D----------   82 (268)
                      .+..+.|+   |||++||.++.+.   .  +.+|+..+++.......+ . +..++|+|+++.|+.++.+          
T Consensus        60 ~~~~~~~S---pDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~  134 (347)
T 2gop_A           60 NATMPRIS---PDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFE  134 (347)
T ss_dssp             SCEEEEEC---TTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC-------
T ss_pred             cCCCeEEC---CCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEE
Confidence            46678887   4999999887653   3  666788888765544433 3 9999999999988877632          


Q ss_pred             -----------------CcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCC-------eEEEEECCCCCCCC
Q 024372           83 -----------------FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEK-------ILRIFDLNRPDAPP  138 (268)
Q Consensus        83 -----------------~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~-------~i~~~d~~~~~~~~  138 (268)
                                       ..|++||+.+++....+..+ .+..+.|+|++ +++++..+.       ...+|.+.+++  .
T Consensus       135 ~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~--~  210 (347)
T 2gop_A          135 DDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK--E  210 (347)
T ss_dssp             --CCCC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE--E
T ss_pred             cccceeecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCc--e
Confidence                             57889999887763333333 67788999999 887776542       34555443222  2


Q ss_pred             eEecCCcccEEEEEEeCCCCcEEEEeeCC-------CeEEEEeCCCCceEEeecC-CCCEEE-EEECCCCcEEE-EeCCC
Q 024372          139 REVGNSSGSIRTVAWLHSDQTILSSCTDS-------GGVRLWDARSGKIVQTLET-KSPVTS-AEVSRDGRYIT-TADGS  208 (268)
Q Consensus       139 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~d-------~~i~iwd~~~~~~~~~~~~-~~~v~~-~~~s~~g~~l~-~~~~~  208 (268)
                      ..+..+ ..+..+  +|++..++..+.++       ..|.+||  +++....... ...+.. +.|+ ++ +++ ++.++
T Consensus       211 ~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~  283 (347)
T 2gop_A          211 EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEG  283 (347)
T ss_dssp             EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETT
T ss_pred             EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCC
Confidence            222222 444444  78887776655432       4788888  6665554444 345665 8899 88 554 45678


Q ss_pred             eEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCCCe-EEEEECCCCcE
Q 024372          209 SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMW-VHVFDFHTGEQ  262 (268)
Q Consensus       209 ~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~-i~~wd~~~g~~  262 (268)
                      .+++| +...+.............+.+++   .++++++.+.. ..+|.+. |+.
T Consensus       284 ~~~l~-~~~g~~~~~~~~~~~v~~~~~s~---~~~~~~~~~~~~~~l~~~~-g~~  333 (347)
T 2gop_A          284 SVNLY-IWDGEIKPIAKGRHWIMGFDVDE---IVVYLKETATRLRELFTWD-GEE  333 (347)
T ss_dssp             EEEEE-EESSSEEEEECSSSEEEEEEESS---SEEEEEECSSSCCEEEEES-SSE
T ss_pred             cEEEE-EcCCceEEEecCCCeEEeeeeeC---cEEEEEcCCCChHHheEeC-CcE
Confidence            99999 86544433333322334555554   67777666554 3666665 553

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.67  E-value=2.8e-13  Score=113.29  Aligned_cols=205  Identities=17%  Similarity=0.150  Sum_probs=146.6

Q ss_pred             cCcEEEEEecCCCcEEEEeeCC------------------------CcEEEEeCCCCCeeeeecc--CCeEEEEEECCCC
Q 024372           61 KGAVWSCCLDANALFSASGSAD------------------------FTAKLWDALTGDEKHSFEH--KHIVRACAFSEDT  114 (268)
Q Consensus        61 ~~~V~~~~~~~~~~~l~s~s~D------------------------~~v~iw~~~~~~~~~~~~~--~~~v~~v~~~~~~  114 (268)
                      -+.+..+++++++.++++.+.+                        ++|.+||..+++....+..  -.....+++++++
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            3678999999999988888777                        4799999988887766643  2367889999999


Q ss_pred             CEEEEeeCCCeEEEEECCCCCCCCeEec---------CCcccEEEEEEeCCCCcEEEEee-CCCeEEEEeCCCCceEEee
Q 024372          115 HLLLTGGFEKILRIFDLNRPDAPPREVG---------NSSGSIRTVAWLHSDQTILSSCT-DSGGVRLWDARSGKIVQTL  184 (268)
Q Consensus       115 ~~l~s~~~d~~i~~~d~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~  184 (268)
                      +++++...++.|+.||..........+.         .+......+++.|+++.++++.+ .++.|++|| ..++.+..+
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~  181 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW  181 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred             CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence            9988888899999999754322333332         22335778999885566776765 578999999 567777766


Q ss_pred             cCC-----------CCEEEEEECCC-CcEEEEe-CCCeEEEEeCCCceeeeEEeCC---CCceeeEEcCC-----CCCEE
Q 024372          185 ETK-----------SPVTSAEVSRD-GRYITTA-DGSSVKFWDANHFGLVKGYNMP---CNTESASLEPK-----LGNIF  243 (268)
Q Consensus       185 ~~~-----------~~v~~~~~s~~-g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~  243 (268)
                      ...           ..+..++++|+ ++++++. .++.|++||..+++.+..+..+   .....+.+.|.     ++..+
T Consensus       182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~  261 (329)
T 3fvz_A          182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPY  261 (329)
T ss_dssp             CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCC
T ss_pred             ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEE
Confidence            421           23789999998 6666664 5689999999877777777533   22344444440     23333


Q ss_pred             EeccCCCeEEEEECCCCcEEeec
Q 024372          244 IAGGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       244 ~~gs~d~~i~~wd~~~g~~~~~~  266 (268)
                      ++.+.+..|++||..+|+.+..+
T Consensus       262 v~~~~~~~v~~~~~~~g~~~~~~  284 (329)
T 3fvz_A          262 FGDQEPVQGFVMNFSSGEIIDVF  284 (329)
T ss_dssp             TTCSCCCCEEEEETTTCCEEEEE
T ss_pred             eccCCCcEEEEEEcCCCeEEEEE
Confidence            34445568999999999887764

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.67  E-value=2.8e-14  Score=119.46  Aligned_cols=219  Identities=13%  Similarity=0.058  Sum_probs=156.8

Q ss_pred             eCCCCeEEeeCCCCCeEEEee----C--ccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEEEC
Q 024372           38 SKDSSPMLRNGETGDWIGTFE----G--HKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFS  111 (268)
Q Consensus        38 s~d~~i~iw~~~~~~~~~~~~----~--h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~  111 (268)
                      +.+++|.++|..+++....+.    +  .......+++.. +.+.++...++.|.+||..+++.+..+........++++
T Consensus        14 ~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~-~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~   92 (328)
T 3dsm_A           14 YSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRD-GIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFL   92 (328)
T ss_dssp             SCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEET-TEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEE
T ss_pred             CCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEEC-CEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEe
Confidence            348899999999998776541    1  123356677753 455566667899999999999998888766678889998


Q ss_pred             CCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCc-----ccEEEEEEeCCCCcEEEEee-CCCeEEEEeCCCCceEEeec
Q 024372          112 EDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSS-----GSIRTVAWLHSDQTILSSCT-DSGGVRLWDARSGKIVQTLE  185 (268)
Q Consensus       112 ~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~  185 (268)
                      +++++.++...++.|.+||+.+.+.. ..+....     .....+++  +++.++++.. .++.|.++|+++++.+.++.
T Consensus        93 ~~g~lyv~~~~~~~v~~iD~~t~~~~-~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~  169 (328)
T 3dsm_A           93 SDEKAYVTQIWDYRIFIINPKTYEIT-GYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELT  169 (328)
T ss_dssp             ETTEEEEEEBSCSEEEEEETTTTEEE-EEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEE
T ss_pred             CCCeEEEEECCCCeEEEEECCCCeEE-EEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEE
Confidence            88865555448999999998765322 2221111     02344555  3556666654 36899999999999888887


Q ss_pred             CCCCEEEEEECCCCcEEEEeCC-----------CeEEEEeCCCceeeeEEeCCC--CceeeEEcCCCCCEEEeccCCCeE
Q 024372          186 TKSPVTSAEVSRDGRYITTADG-----------SSVKFWDANHFGLVKGYNMPC--NTESASLEPKLGNIFIAGGEDMWV  252 (268)
Q Consensus       186 ~~~~v~~~~~s~~g~~l~~~~~-----------~~v~~wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~gs~d~~i  252 (268)
                      .......+.++|+|++++++.+           +.|.++|..+.+.++.+..+.  .+..++++++ ++.++.+..  .|
T Consensus       170 ~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d-~~~lyv~~~--~v  246 (328)
T 3dsm_A          170 IGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGT-RDTLYWINN--DI  246 (328)
T ss_dssp             CSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTT-SCEEEEESS--SE
T ss_pred             cCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecC-CCEEEEEcc--EE
Confidence            6555678999999998776532           689999999888887777643  4677888874 555555433  79


Q ss_pred             EEEECCCCcEE
Q 024372          253 HVFDFHTGEQI  263 (268)
Q Consensus       253 ~~wd~~~g~~~  263 (268)
                      ++||..+++..
T Consensus       247 ~~~d~~t~~~~  257 (328)
T 3dsm_A          247 WRMPVEADRVP  257 (328)
T ss_dssp             EEEETTCSSCC
T ss_pred             EEEECCCCcee
Confidence            99999888753

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.66  E-value=6.6e-13  Score=109.56  Aligned_cols=237  Identities=12%  Similarity=0.140  Sum_probs=161.7

Q ss_pred             ecCCCeeeEEEecCCCCCcEEEE-------EeCCCCeEEeeCCCCCeEEEee----CccCcEEEEEecCC-CcEEEEeeC
Q 024372           14 GHSRPVVDLFYSPITPDGFFLVS-------ASKDSSPMLRNGETGDWIGTFE----GHKGAVWSCCLDAN-ALFSASGSA   81 (268)
Q Consensus        14 ~h~~~v~~~~f~~~~~dg~~l~s-------~s~d~~i~iw~~~~~~~~~~~~----~h~~~V~~~~~~~~-~~~l~s~s~   81 (268)
                      +......+++|.   ++|.++++       ++.++.|..|+..+++......    ++...+..++++++ +.++++.. 
T Consensus        15 ~~~~~~~~~~~~---~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-   90 (314)
T 1pjx_A           15 EDIPGAEGPVFD---KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-   90 (314)
T ss_dssp             CCCTTCEEEEEC---TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-
T ss_pred             ccCCCccCceEC---CCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-
Confidence            344556789997   48888887       6888999999988887653222    25577899999999 77655544 


Q ss_pred             CCcEEEEeCCCCCeeee-ecc-----CCeEEEEEECCCCCEEEEeeCC---------------CeEEEEECCCCCCCCeE
Q 024372           82 DFTAKLWDALTGDEKHS-FEH-----KHIVRACAFSEDTHLLLTGGFE---------------KILRIFDLNRPDAPPRE  140 (268)
Q Consensus        82 D~~v~iw~~~~~~~~~~-~~~-----~~~v~~v~~~~~~~~l~s~~~d---------------~~i~~~d~~~~~~~~~~  140 (268)
                      ...|.+||.. ++.... ...     ...+..+.+++++++.++...+               +.+..||.. ++  ...
T Consensus        91 ~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~--~~~  166 (314)
T 1pjx_A           91 RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ--MIQ  166 (314)
T ss_dssp             TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC--EEE
T ss_pred             CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CC--EEE
Confidence            3478899987 655433 221     1347889999999988776654               456666654 22  122


Q ss_pred             ecCCcccEEEEEEe----CCCCcEEEEeeCCCeEEEEeCC-CCc-----eEEeecCC--CCEEEEEECCCCcEEEEe-CC
Q 024372          141 VGNSSGSIRTVAWL----HSDQTILSSCTDSGGVRLWDAR-SGK-----IVQTLETK--SPVTSAEVSRDGRYITTA-DG  207 (268)
Q Consensus       141 ~~~~~~~v~~~~~~----~~~~~~~~~~~~d~~i~iwd~~-~~~-----~~~~~~~~--~~v~~~~~s~~g~~l~~~-~~  207 (268)
                      ..........++++    +++..++++...++.|.+||++ +++     ....+...  ..+..++++++|+++++. .+
T Consensus       167 ~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~  246 (314)
T 1pjx_A          167 VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGS  246 (314)
T ss_dssp             EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETT
T ss_pred             eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCC
Confidence            21222345678888    8776666666667899999986 454     22333332  457889999999987765 57


Q ss_pred             CeEEEEeCCCceeeeEEeCC-CCceeeEEcCCCCC-EEEeccCCCeEEEEECCC
Q 024372          208 SSVKFWDANHFGLVKGYNMP-CNTESASLEPKLGN-IFIAGGEDMWVHVFDFHT  259 (268)
Q Consensus       208 ~~v~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~gs~d~~i~~wd~~~  259 (268)
                      +.|..||.++.+.+..+..+ ..+..+++.+ +++ ++++...++.|..|++..
T Consensus       247 ~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~-dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          247 SHIEVFGPDGGQPKMRIRCPFEKPSNLHFKP-QTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             TEEEEECTTCBSCSEEEECSSSCEEEEEECT-TSSEEEEEETTTTEEEEEECSS
T ss_pred             CEEEEEcCCCCcEeEEEeCCCCCceeEEECC-CCCEEEEEeCCCCeEEEEeCCC
Confidence            89999999866666666665 3455666655 577 556666778899999864

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.66  E-value=7.5e-13  Score=112.74  Aligned_cols=227  Identities=12%  Similarity=0.037  Sum_probs=151.7

Q ss_pred             CCCcEEEEEeC--CC---CeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEee----------CCCcEEEEeCCCC
Q 024372           29 PDGFFLVSASK--DS---SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS----------ADFTAKLWDALTG   93 (268)
Q Consensus        29 ~dg~~l~s~s~--d~---~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s----------~D~~v~iw~~~~~   93 (268)
                      ++++++..+..  ..   ++.++|..+++.+.++..-..+  .++++||+++++.+.          .++.|.++|..+.
T Consensus        30 ~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~  107 (373)
T 2mad_H           30 ADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF  107 (373)
T ss_pred             CCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC
Confidence            67777777654  22   7899999999999888754444  789999999887664          3678999999988


Q ss_pred             CeeeeeccC--------CeEEEEEECCCCCEEEEeeC--CCeEEEEECCCCCCCCeE-ecCCcccEEEEEEeCCCCcEEE
Q 024372           94 DEKHSFEHK--------HIVRACAFSEDTHLLLTGGF--EKILRIFDLNRPDAPPRE-VGNSSGSIRTVAWLHSDQTILS  162 (268)
Q Consensus        94 ~~~~~~~~~--------~~v~~v~~~~~~~~l~s~~~--d~~i~~~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~  162 (268)
                      +....+...        ..-..+.++|++++|+.++.  ++.|.++| .+.+.. .. .... +   ++.+.+.+...++
T Consensus       108 ~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~-~~~i~~~-~---~~~~~~~~~~~~~  181 (373)
T 2mad_H          108 LPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSD-DQLLSSP-T---CYHIHPGAPSTFY  181 (373)
T ss_pred             cEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEE-eEEcCCC-c---eEEEEeCCCceEE
Confidence            877766432        22447889999999998874  47899999 765432 22 2111 1   1222333333333


Q ss_pred             EeeCCCeEEEEeCCCCceE--------------------------------------------------EeecC------
Q 024372          163 SCTDSGGVRLWDARSGKIV--------------------------------------------------QTLET------  186 (268)
Q Consensus       163 ~~~~d~~i~iwd~~~~~~~--------------------------------------------------~~~~~------  186 (268)
                      +...||.+.++|. +++.+                                                  ..+..      
T Consensus       182 ~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~  260 (373)
T 2mad_H          182 LLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRK  260 (373)
T ss_pred             EEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCccc
Confidence            3333444444444 33222                                                  11110      


Q ss_pred             -----CCCEEEEEECCCCcEEEE-eC----------CCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCC-EEEecc-C
Q 024372          187 -----KSPVTSAEVSRDGRYITT-AD----------GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGN-IFIAGG-E  248 (268)
Q Consensus       187 -----~~~v~~~~~s~~g~~l~~-~~----------~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~gs-~  248 (268)
                           ......+.++|+++.+.. ..          ++.|.+.|+.+++.++.+.....+..+.+++ +|+ +++++. .
T Consensus       261 ~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~-Dg~~~l~v~~~~  339 (373)
T 2mad_H          261 ADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQ-DGGPDLYALSAG  339 (373)
T ss_pred             ccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECC-CCCeEEEEEcCC
Confidence                 011233678888875543 21          2479999999999999998877788888888 576 677766 5


Q ss_pred             CCeEEEEECCCCcEEee
Q 024372          249 DMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       249 d~~i~~wd~~~g~~~~~  265 (268)
                      ++.|.+||+++++.+..
T Consensus       340 ~~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          340 TEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             CCeEEEEECCCCCEEee
Confidence            88999999999998765

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.64  E-value=7.2e-12  Score=102.31  Aligned_cols=237  Identities=8%  Similarity=-0.003  Sum_probs=165.0

Q ss_pred             eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEE-eeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCC
Q 024372           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGT-FEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL   91 (268)
Q Consensus        13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~-~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~   91 (268)
                      ..+...+.++++.|   +|++.++...++.+.+|+.. ++.... +..+...+..+++.+++.+.++...++.|..|+..
T Consensus        11 ~~~~~~~~~i~~d~---~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~   86 (299)
T 2z2n_A           11 TNQDTGPYGITVSD---KGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK   86 (299)
T ss_dssp             CSSSCCEEEEEECT---TSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             CCcCCCccceEECC---CCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC
Confidence            34566889999984   88888776668899999988 664432 22345678999999999988877778899999976


Q ss_pred             CCCeeeeec---cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCC
Q 024372           92 TGDEKHSFE---HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG  168 (268)
Q Consensus        92 ~~~~~~~~~---~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~  168 (268)
                       +.. ..+.   ....+..+.+.+++++.++...++.+..||. ++.............+..+++.+++ .+.++...++
T Consensus        87 -g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~  162 (299)
T 2z2n_A           87 -GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDN-ALWFTENQNN  162 (299)
T ss_dssp             -SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTS-CEEEEETTTT
T ss_pred             -CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCC-CEEEEeCCCC
Confidence             332 2222   3346788999999998888777889999997 3322111112233457788887766 4555555568


Q ss_pred             eEEEEeCCCCceEEe-ec-CCCCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeCC---CCceeeEEcCCCCCE
Q 024372          169 GVRLWDARSGKIVQT-LE-TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMP---CNTESASLEPKLGNI  242 (268)
Q Consensus       169 ~i~iwd~~~~~~~~~-~~-~~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  242 (268)
                      .|..||. +++.... +. ....+..++++++|+++++. .++.|..||. +.. +..+..+   ..+..+.+.+ +|.+
T Consensus       163 ~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~-~~~~~~~~~~~~~~~i~~~~-~g~l  238 (299)
T 2z2n_A          163 AIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGE-ITEFKIPTPNARPHAITAGA-GIDL  238 (299)
T ss_dssp             EEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC-EEEEECSSTTCCEEEEEECS-TTCE
T ss_pred             EEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCc-EEEEECCCCCCCceeEEECC-CCCE
Confidence            9999999 6765443 22 23457899999999887765 4678999998 544 3334333   3345566666 5887


Q ss_pred             EEeccCCCeEEEEECCCCcE
Q 024372          243 FIAGGEDMWVHVFDFHTGEQ  262 (268)
Q Consensus       243 ~~~gs~d~~i~~wd~~~g~~  262 (268)
                      +++...++.|..||. +|+.
T Consensus       239 ~v~~~~~~~i~~~d~-~g~~  257 (299)
T 2z2n_A          239 WFTEWGANKIGRLTS-NNII  257 (299)
T ss_dssp             EEEETTTTEEEEEET-TTEE
T ss_pred             EEeccCCceEEEECC-CCce
Confidence            777767888999997 4543

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.63  E-value=9.2e-14  Score=117.89  Aligned_cols=233  Identities=12%  Similarity=0.088  Sum_probs=154.4

Q ss_pred             CCCcEEEEEe------CCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEee----------CCCcEEEEeCCC
Q 024372           29 PDGFFLVSAS------KDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS----------ADFTAKLWDALT   92 (268)
Q Consensus        29 ~dg~~l~s~s------~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s----------~D~~v~iw~~~~   92 (268)
                      ++++++....      .|+++.+||..+++.+.++..+..+  .++|+|++++++.++          .+++|.+||..+
T Consensus        13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t   90 (361)
T 2oiz_A           13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK   90 (361)
T ss_dssp             CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT
T ss_pred             CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC
Confidence            4667776654      4779999999999999999877766  899999999887765          367899999998


Q ss_pred             CCeeeeecc-------CCeEEEEEECCCCCEEEEeeC--CCeEEEEECCCCCCCCeE-ecCCcccEEEEEEeCCCCcEEE
Q 024372           93 GDEKHSFEH-------KHIVRACAFSEDTHLLLTGGF--EKILRIFDLNRPDAPPRE-VGNSSGSIRTVAWLHSDQTILS  162 (268)
Q Consensus        93 ~~~~~~~~~-------~~~v~~v~~~~~~~~l~s~~~--d~~i~~~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~  162 (268)
                      .+....+..       ......+.++|++++|+++..  ++.|.+||+.+.+. ... +.. . ....+.+.|.+...++
T Consensus        91 ~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~-~~~~i~~-~-~~~~v~~~p~~~~~~~  167 (361)
T 2oiz_A           91 LTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDY-VEDVTAA-A-GCWSVIPQPNRPRSFM  167 (361)
T ss_dssp             CCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEE-EEEEGGG-T-TEEEEEECTTSSSEEE
T ss_pred             CcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcE-EEEEecC-C-CcceeEEcCCCCeeEE
Confidence            888776642       234557889999999998874  58899999976532 222 221 1 2223456777656666


Q ss_pred             EeeCCCeEEEEeCCC-CceEE------eecCCCCEEEEEECCCCcEE-EEeCCCeEEEEeCCCce--eeeEEeC------
Q 024372          163 SCTDSGGVRLWDARS-GKIVQ------TLETKSPVTSAEVSRDGRYI-TTADGSSVKFWDANHFG--LVKGYNM------  226 (268)
Q Consensus       163 ~~~~d~~i~iwd~~~-~~~~~------~~~~~~~v~~~~~s~~g~~l-~~~~~~~v~~wd~~~~~--~~~~~~~------  226 (268)
                      +.+.||.+.+|++.. ++...      .+........+.++|++..+ ..+.++.|.++|+....  .+..+..      
T Consensus       168 ~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~  247 (361)
T 2oiz_A          168 TICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDK  247 (361)
T ss_dssp             EEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHH
T ss_pred             EECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccc
Confidence            677789999999865 55542      12221112233345666443 44567789999986432  2233322      


Q ss_pred             -----CCCceeeEEcCCCCCEEEecc----------CCCeEEEEECCCCcEEeec
Q 024372          227 -----PCNTESASLEPKLGNIFIAGG----------EDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       227 -----~~~~~~~~~~~~~~~~~~~gs----------~d~~i~~wd~~~g~~~~~~  266 (268)
                           +.....+.++++.++.+++.+          ....|.+||+++++.+...
T Consensus       248 ~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i  302 (361)
T 2oiz_A          248 AKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARI  302 (361)
T ss_dssp             HTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEE
T ss_pred             ccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEE
Confidence                 112223566764445555443          1347999999999988753

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.63  E-value=6.7e-14  Score=117.32  Aligned_cols=221  Identities=16%  Similarity=0.171  Sum_probs=140.8

Q ss_pred             CCeeeEEEecCCCCCcEEEEEe---------CCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCC---C-
Q 024372           17 RPVVDLFYSPITPDGFFLVSAS---------KDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD---F-   83 (268)
Q Consensus        17 ~~v~~~~f~~~~~dg~~l~s~s---------~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D---~-   83 (268)
                      ..+....+     ||++++...         .+..+.+|+..+++.. .+    ..+..++|+|||++++..+.+   + 
T Consensus        15 ~~~~~~~~-----dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l----~~~~~~~~SpDg~~la~~~~~~~~~~   84 (347)
T 2gop_A           15 AYLSDPRT-----KGELVAYVLTKANLKDNKYENTIVIENLKNNARR-FI----ENATMPRISPDGKKIAFMRANEEKKV   84 (347)
T ss_dssp             CEEEEEEE-----ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE-EE----ESCEEEEECTTSSEEEEEEEETTTTE
T ss_pred             EEcccceE-----CCcEEEEEEeecCcccCCccceEEEEeCCCCceE-Ec----ccCCCeEECCCCCEEEEEEeccCCCc
Confidence            34555555     677777653         2567888999888754 34    567889999999998877654   3 


Q ss_pred             -cEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCC---------------------------CeEEEEECCCCC
Q 024372           84 -TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFE---------------------------KILRIFDLNRPD  135 (268)
Q Consensus        84 -~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d---------------------------~~i~~~d~~~~~  135 (268)
                       .|.+|++.+++......... +..+.|+|+++.|+.++.+                           ..|.+||+.+++
T Consensus        85 ~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~  163 (347)
T 2gop_A           85 SEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE  163 (347)
T ss_dssp             EEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTE
T ss_pred             ceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe
Confidence             37778888877666555555 8899999999988887642                           568889987654


Q ss_pred             CCCeEecCCcccEEEEEEeCCCCcEEEEeeCC---------CeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEE-e
Q 024372          136 APPREVGNSSGSIRTVAWLHSDQTILSSCTDS---------GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-A  205 (268)
Q Consensus       136 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d---------~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~  205 (268)
                      .. ..+.. . .+..+.|+|++  ++.++..+         ..|.++|  +++....... ..+..+  +|+|++++. +
T Consensus       164 ~~-~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~-~~~~~~--spdg~~l~~~~  233 (347)
T 2gop_A          164 VI-EEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK-VSFYAV--DSDGERILLYG  233 (347)
T ss_dssp             EE-EEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE-ESEEEE--EECSSCEEEEE
T ss_pred             EE-eeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeC--CCceEEeccC-cceeeE--CCCCCEEEEEE
Confidence            21 22222 2 56788999987  44444332         1455555  5554433333 444443  999987653 3


Q ss_pred             CC--------CeEEEEeCCCceeeeEEeCCCC-cee-eEEcCCCCCEEEeccCCCeEEEEECCCCcEEe
Q 024372          206 DG--------SSVKFWDANHFGLVKGYNMPCN-TES-ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIA  264 (268)
Q Consensus       206 ~~--------~~v~~wd~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~  264 (268)
                      .+        ..|.+||  ..+.......... ... ..+.  ++ ++++++.++.+++| +.+|+...
T Consensus       234 ~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s--dg-~~~~~~~~~~~~l~-~~~g~~~~  296 (347)
T 2gop_A          234 KPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD--GK-VYFTLFEEGSVNLY-IWDGEIKP  296 (347)
T ss_dssp             CCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET--TE-EEEEEEETTEEEEE-EESSSEEE
T ss_pred             ccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc--Cc-EEEEEecCCcEEEE-EcCCceEE
Confidence            22        3688888  3333222222222 222 4454  56 88889999999999 87666543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.62  E-value=1.9e-13  Score=111.72  Aligned_cols=188  Identities=11%  Similarity=0.152  Sum_probs=141.6

Q ss_pred             CcEEEEeeCCCcEEEEeCCCCCeeeeeccCC--eEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEE
Q 024372           73 ALFSASGSADFTAKLWDALTGDEKHSFEHKH--IVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRT  150 (268)
Q Consensus        73 ~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~--~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~  150 (268)
                      +.++++++.|+.|++||.++++.+..+....  .+.++.+.|++++++  +.++.+..||. +++...+........+..
T Consensus         5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~   81 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQT   81 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEE
T ss_pred             CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccc
Confidence            5778999999999999999999988886543  678899999999988  45778999997 554333332222346778


Q ss_pred             EEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecC-------CCCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeee
Q 024372          151 VAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-------KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVK  222 (268)
Q Consensus       151 ~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-------~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~  222 (268)
                      +.+.+++..+++.+.+.+.|..+|. +|+.+.++..       +.....+.+.++|+++++. .++.|..||.. ++.+.
T Consensus        82 ~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w  159 (276)
T 3no2_A           82 ARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLN  159 (276)
T ss_dssp             EEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEE
T ss_pred             cEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEE
Confidence            8888877665554432578888885 6887766542       1234456789999998775 57899999998 88888


Q ss_pred             EEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEeec
Q 024372          223 GYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~~  266 (268)
                      .+..+..+......+ +|.++++++.++.|+.+|.++|+.+-.+
T Consensus       160 ~~~~~~~~~~~~~~~-~g~~~v~~~~~~~v~~~d~~tG~~~w~~  202 (276)
T 3no2_A          160 SVKLSGTPFSSAFLD-NGDCLVACGDAHCFVQLNLESNRIVRRV  202 (276)
T ss_dssp             EEECSSCCCEEEECT-TSCEEEECBTTSEEEEECTTTCCEEEEE
T ss_pred             EEECCCCccceeEcC-CCCEEEEeCCCCeEEEEeCcCCcEEEEe
Confidence            888765555666655 6899999888889999999999987554

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.60  E-value=3.1e-13  Score=124.10  Aligned_cols=232  Identities=9%  Similarity=-0.009  Sum_probs=149.1

Q ss_pred             CCCcEEEEEeCCC---CeEEee--CCCCCeEEEe------eCccCcEEEEEecCCCcEEE-----EeeCCCcEEEEeCCC
Q 024372           29 PDGFFLVSASKDS---SPMLRN--GETGDWIGTF------EGHKGAVWSCCLDANALFSA-----SGSADFTAKLWDALT   92 (268)
Q Consensus        29 ~dg~~l~s~s~d~---~i~iw~--~~~~~~~~~~------~~h~~~V~~~~~~~~~~~l~-----s~s~D~~v~iw~~~~   92 (268)
                      |+|.+++-...++   .-.+|-  ...++...-+      .+|...+..++|+|||++||     +|+.+.+|++||+.+
T Consensus        77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t  156 (695)
T 2bkl_A           77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS  156 (695)
T ss_dssp             EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT
T ss_pred             EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC
Confidence            5888888777665   355664  3344433222      24666789999999999988     555668999999998


Q ss_pred             CCee-eeeccCCeEEEEEECCCCCEEEEeeCCCe-------------EEEEECCCCCCCCeEe-c--CCcccEEEEEEeC
Q 024372           93 GDEK-HSFEHKHIVRACAFSEDTHLLLTGGFEKI-------------LRIFDLNRPDAPPREV-G--NSSGSIRTVAWLH  155 (268)
Q Consensus        93 ~~~~-~~~~~~~~v~~v~~~~~~~~l~s~~~d~~-------------i~~~d~~~~~~~~~~~-~--~~~~~v~~~~~~~  155 (268)
                      ++.. ...........++|+||++.|+.++.|..             |++|++.++....... .  .+...+..+.|+|
T Consensus       157 g~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp  236 (695)
T 2bkl_A          157 GEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR  236 (695)
T ss_dssp             CCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT
T ss_pred             CCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC
Confidence            8765 21111111257889999999999988776             9999997654221222 1  2334678899999


Q ss_pred             CCCcEEEEeeCC---CeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEeC----CCeEEEEeCCCcee---eeEEe
Q 024372          156 SDQTILSSCTDS---GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTAD----GSSVKFWDANHFGL---VKGYN  225 (268)
Q Consensus       156 ~~~~~~~~~~~d---~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~----~~~v~~wd~~~~~~---~~~~~  225 (268)
                      ++..+++++.+.   ..|.+||..+++...............+ |+|.+++.++    +..|.+||+.+...   .....
T Consensus       237 DG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~  315 (695)
T 2bkl_A          237 DGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVP  315 (695)
T ss_dssp             TSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEEC
T ss_pred             CCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEec
Confidence            998887776553   2788887766655444444444445555 5665555443    47899999976542   22222


Q ss_pred             CC-CC-ceeeEEcCCCCCEEEeccCCCeEEEEECC-CCcEE
Q 024372          226 MP-CN-TESASLEPKLGNIFIAGGEDMWVHVFDFH-TGEQI  263 (268)
Q Consensus       226 ~~-~~-~~~~~~~~~~~~~~~~gs~d~~i~~wd~~-~g~~~  263 (268)
                      .. .. ...+.+.  .+.++++...|+..++|.+. +|+.+
T Consensus       316 ~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~  354 (695)
T 2bkl_A          316 EDSSASLLSVSIV--GGHLSLEYLKDATSEVRVATLKGKPV  354 (695)
T ss_dssp             CCSSCEEEEEEEE--TTEEEEEEEETTEEEEEEEETTCCEE
T ss_pred             CCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCee
Confidence            22 11 2334444  47788888899988887654 35543

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.59  E-value=5.8e-13  Score=123.22  Aligned_cols=242  Identities=10%  Similarity=-0.001  Sum_probs=149.0

Q ss_pred             ecCCCeeeEEEecCCCCCcEEEEEeCC-----CCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCc----
Q 024372           14 GHSRPVVDLFYSPITPDGFFLVSASKD-----SSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFT----   84 (268)
Q Consensus        14 ~h~~~v~~~~f~~~~~dg~~l~s~s~d-----~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~----   84 (268)
                      +|+..+.+++|+   |||++||.++.+     .+|++||+.+|+.+.. ..+...+..++|+|| +.|+.++.|..    
T Consensus       160 ~~~~~~~~~~~S---PDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~  234 (741)
T 1yr2_A          160 DGATALDAWAAS---DDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQ  234 (741)
T ss_dssp             ---EEEEEEEEC---TTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC----
T ss_pred             CCCEEEEeEEEC---CCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCccccc
Confidence            344467788888   499999887655     4589999999987643 112222356789999 88887776654    


Q ss_pred             ----------EEEEeCCCCCe--eeeec---cCCeEEEEEECCCCCEEEEeeCC-----CeEEEEECCCCCCC-CeEecC
Q 024372           85 ----------AKLWDALTGDE--KHSFE---HKHIVRACAFSEDTHLLLTGGFE-----KILRIFDLNRPDAP-PREVGN  143 (268)
Q Consensus        85 ----------v~iw~~~~~~~--~~~~~---~~~~v~~v~~~~~~~~l~s~~~d-----~~i~~~d~~~~~~~-~~~~~~  143 (268)
                                |++|++.++..  ...+.   +...+..+.|+|||+.|+..+.+     ..+.+||+.++... ...+..
T Consensus       235 ~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~  314 (741)
T 1yr2_A          235 AFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIP  314 (741)
T ss_dssp             ----CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEEC
T ss_pred             ccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecC
Confidence                      88999987763  22332   22357889999999988877654     48999998765212 333333


Q ss_pred             CcccEEEEEEeCCCCcEEEEeeC---CCeEEEEeCCCC--ceEEeecCCC-CEEEEEECCCCcEEEE-eCCCeEEEEeCC
Q 024372          144 SSGSIRTVAWLHSDQTILSSCTD---SGGVRLWDARSG--KIVQTLETKS-PVTSAEVSRDGRYITT-ADGSSVKFWDAN  216 (268)
Q Consensus       144 ~~~~v~~~~~~~~~~~~~~~~~~---d~~i~iwd~~~~--~~~~~~~~~~-~v~~~~~s~~g~~l~~-~~~~~v~~wd~~  216 (268)
                      +........ .+++..++..+..   .+.|.+||+.++  +....+.... .+..+.++ ++.++++ ..++..++|.+.
T Consensus       315 ~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~  392 (741)
T 1yr2_A          315 DLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFD  392 (741)
T ss_dssp             SSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEE
T ss_pred             CCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence            333344433 4777776665443   346999999875  3333344333 35567777 4455544 456766666443


Q ss_pred             -CceeeeEEeCCCC--ceeeEEcCCCCCEEEec---cCCCeEEEEECCCCcE
Q 024372          217 -HFGLVKGYNMPCN--TESASLEPKLGNIFIAG---GEDMWVHVFDFHTGEQ  262 (268)
Q Consensus       217 -~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g---s~d~~i~~wd~~~g~~  262 (268)
                       .++.++.+..+..  ...+.+.++...++++.   ...+.|++||+.+|+.
T Consensus       393 ~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~  444 (741)
T 1yr2_A          393 LDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT  444 (741)
T ss_dssp             TTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred             CCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence             3444555554322  23344555333444433   3467899999988773

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.58  E-value=3.8e-11  Score=97.94  Aligned_cols=233  Identities=9%  Similarity=0.023  Sum_probs=157.2

Q ss_pred             cCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEee--CccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCC
Q 024372           15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE--GHKGAVWSCCLDANALFSASGSADFTAKLWDALT   92 (268)
Q Consensus        15 h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~--~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~   92 (268)
                      +...+.++++.|   +|.+.++...++.+..|+.. ++. ..+.  .+...+..+++.+++.++++...++.|..||. +
T Consensus        55 ~~~~~~~i~~~~---~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~  128 (299)
T 2z2n_A           55 PDAKVMCLTISS---DGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-D  128 (299)
T ss_dssp             TTCCEEEEEECT---TSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-T
T ss_pred             ccCceeeEEECC---CCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-C
Confidence            456788898874   78888777778889999876 543 2332  34557889999999988888777889999998 5


Q ss_pred             CCeeeee-c-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeE
Q 024372           93 GDEKHSF-E-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (268)
Q Consensus        93 ~~~~~~~-~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i  170 (268)
                      +...... . ....+..+.+.+++++.++...++.+..||. +++............+..+++.+++. +.++...++.|
T Consensus       129 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i  206 (299)
T 2z2n_A          129 GKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDA-LWFVEIIGNKI  206 (299)
T ss_dssp             CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTEE
T ss_pred             CCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCC-EEEEccCCceE
Confidence            5443322 1 3346788999999988887777789999997 43321111222234567888877654 55555556899


Q ss_pred             EEEeCCCCceEEe-ec-CCCCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeCC---CCceeeEEcCCCCCEEE
Q 024372          171 RLWDARSGKIVQT-LE-TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMP---CNTESASLEPKLGNIFI  244 (268)
Q Consensus       171 ~iwd~~~~~~~~~-~~-~~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  244 (268)
                      .+||. +++.... .. ....+.+++++++|+++++. .++.|..||.. . .+..+..+   ..+..+.+  +++.+++
T Consensus       207 ~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g-~~~~~~~~~~~~~~~~i~~--~~g~l~v  281 (299)
T 2z2n_A          207 GRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN-N-IIEEYPIQIKSAEPHGICF--DGETIWF  281 (299)
T ss_dssp             EEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT-T-EEEEEECSSSSCCEEEEEE--CSSCEEE
T ss_pred             EEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC-C-ceEEEeCCCCCCccceEEe--cCCCEEE
Confidence            99999 6664432 22 23568899999999987776 56899999983 3 34455433   23445555  4688777


Q ss_pred             eccCCCeEEEEECCCCc
Q 024372          245 AGGEDMWVHVFDFHTGE  261 (268)
Q Consensus       245 ~gs~d~~i~~wd~~~g~  261 (268)
                      +.+ .+.|..+|.++++
T Consensus       282 ~~~-~~~l~~~~~~~~~  297 (299)
T 2z2n_A          282 AME-CDKIGKLTLIKDN  297 (299)
T ss_dssp             EET-TTEEEEEEEC---
T ss_pred             Eec-CCcEEEEEcCccc
Confidence            665 4557777776654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.58  E-value=1.4e-12  Score=107.10  Aligned_cols=200  Identities=14%  Similarity=0.106  Sum_probs=134.8

Q ss_pred             eeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCc----cCcEEEEEecCCCcEEEE----eeC--
Q 024372           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH----KGAVWSCCLDANALFSAS----GSA--   81 (268)
Q Consensus        12 ~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h----~~~V~~~~~~~~~~~l~s----~s~--   81 (268)
                      +..+...+.+++|+|   +|+++++...++.|.+|+..+++........    ...+..+++++++.++++    |..  
T Consensus        64 ~~~~~~~~~~l~~~~---dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~  140 (296)
T 3e5z_A           64 EMHPSHHQNGHCLNK---QGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKP  140 (296)
T ss_dssp             EESSCSSEEEEEECT---TCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCG
T ss_pred             EECCCCCcceeeECC---CCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccc
Confidence            445667788999985   8988887777889999999888865433221    124567899999998887    331  


Q ss_pred             -----------CCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECC-CCCC-C-CeEecCCccc
Q 024372           82 -----------DFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLN-RPDA-P-PREVGNSSGS  147 (268)
Q Consensus        82 -----------D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~-~~~~-~-~~~~~~~~~~  147 (268)
                                 .+.|..++.. +.......+......++|+|+++.+++.+.++.|.+|++. .+.. . ...+....+.
T Consensus       141 ~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~  219 (296)
T 3e5z_A          141 EEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGK  219 (296)
T ss_dssp             GGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSC
T ss_pred             cccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCC
Confidence                       2345555544 4443334455567889999999988777888999999986 2221 0 1122223344


Q ss_pred             EEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCCCEEEEEE-CCCCcEEEEeCCCeEEEEeCCCce
Q 024372          148 IRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEV-SRDGRYITTADGSSVKFWDANHFG  219 (268)
Q Consensus       148 v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~-s~~g~~l~~~~~~~v~~wd~~~~~  219 (268)
                      ...+++.+++. +.++.  ++.|.+||.. ++.+..+.....+.+++| +|+++.|..++.+.+..++.++.+
T Consensus       220 p~~i~~d~~G~-l~v~~--~~~v~~~~~~-g~~~~~~~~~~~~~~~~f~~~d~~~L~v~t~~~l~~~~~~~~~  288 (296)
T 3e5z_A          220 TDGLRVDAGGL-IWASA--GDGVHVLTPD-GDELGRVLTPQTTSNLCFGGPEGRTLYMTVSTEFWSIETNVRG  288 (296)
T ss_dssp             CCSEEEBTTSC-EEEEE--TTEEEEECTT-SCEEEEEECSSCCCEEEEESTTSCEEEEEETTEEEEEECSCCB
T ss_pred             CCeEEECCCCC-EEEEc--CCeEEEECCC-CCEEEEEECCCCceeEEEECCCCCEEEEEcCCeEEEEEccccc
Confidence            56688887765 55444  5899999987 777777764434788899 689887655544556556665543

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.56  E-value=6.5e-13  Score=122.28  Aligned_cols=234  Identities=12%  Similarity=0.028  Sum_probs=147.4

Q ss_pred             CCCcEEEEEeCCCC---eEEee--CCCCCeEEEe------eCccCcEEEEEecCCCcEEEEeeCCC-----cEEEEeCCC
Q 024372           29 PDGFFLVSASKDSS---PMLRN--GETGDWIGTF------EGHKGAVWSCCLDANALFSASGSADF-----TAKLWDALT   92 (268)
Q Consensus        29 ~dg~~l~s~s~d~~---i~iw~--~~~~~~~~~~------~~h~~~V~~~~~~~~~~~l~s~s~D~-----~v~iw~~~~   92 (268)
                      |+|.+++-...++.   -.+|-  ...++....+      .+|...+..++|+||++++|.++.++     +|++||+.+
T Consensus        81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t  160 (710)
T 2xdw_A           81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG  160 (710)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred             EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence            57877776654432   14553  3344432112      23545688899999999988665433     899999999


Q ss_pred             CCeeeeeccCCeEEEEEECCCCCEEEEeeCCCe----------------EEEEECCCCCCCCeEe-c--CCcccEEEEEE
Q 024372           93 GDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKI----------------LRIFDLNRPDAPPREV-G--NSSGSIRTVAW  153 (268)
Q Consensus        93 ~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~----------------i~~~d~~~~~~~~~~~-~--~~~~~v~~~~~  153 (268)
                      ++..........+..++|+||++.|+.++.++.                |++|++.++....... .  .+...+..+.|
T Consensus       161 g~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~  240 (710)
T 2xdw_A          161 AKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAEL  240 (710)
T ss_dssp             TEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE
T ss_pred             CCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEE
Confidence            887653322222567899999999998887765                9999997654221222 1  13345678899


Q ss_pred             eCCCCcEEEEeeC----CCeEEEEeCCC------Cc-eEEeec-CCCCEEEEEECCCCcEEE-EeC----CCeEEEEeCC
Q 024372          154 LHSDQTILSSCTD----SGGVRLWDARS------GK-IVQTLE-TKSPVTSAEVSRDGRYIT-TAD----GSSVKFWDAN  216 (268)
Q Consensus       154 ~~~~~~~~~~~~~----d~~i~iwd~~~------~~-~~~~~~-~~~~v~~~~~s~~g~~l~-~~~----~~~v~~wd~~  216 (268)
                      +|++..++.++..    +..|++||+.+      ++ ....+. ....... .++|+|+.++ .+.    ...|.+||+.
T Consensus       241 SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~  319 (710)
T 2xdw_A          241 SDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFT  319 (710)
T ss_dssp             CTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETT
T ss_pred             cCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCC
Confidence            9999887766542    46899999986      43 344443 3333333 5888887654 333    2469999997


Q ss_pred             Cce--eeeEEeCC-C--CceeeEEcCCCCCEEEeccCCC--eEEEEECCCCcEEe
Q 024372          217 HFG--LVKGYNMP-C--NTESASLEPKLGNIFIAGGEDM--WVHVFDFHTGEQIA  264 (268)
Q Consensus       217 ~~~--~~~~~~~~-~--~~~~~~~~~~~~~~~~~gs~d~--~i~~wd~~~g~~~~  264 (268)
                      +..  ..+.+..+ .  ....+.+.+ .+.+++++..|+  .|++||..+|+.+.
T Consensus       320 ~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~lv~~~~~~g~~~l~~~~~~~g~~~~  373 (710)
T 2xdw_A          320 DPEESKWKVLVPEHEKDVLEWVACVR-SNFLVLCYLHDVKNTLQLHDLATGALLK  373 (710)
T ss_dssp             SCCGGGCEEEECCCSSCEEEEEEEET-TTEEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred             CCCcccceeccCCCCCCeEEEEEEEc-CCEEEEEEEECCEEEEEEEECCCCCEEE
Confidence            653  12333222 2  223445553 577788888887  46777876777544

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.54  E-value=1.7e-11  Score=105.60  Aligned_cols=233  Identities=12%  Similarity=0.040  Sum_probs=156.6

Q ss_pred             CCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCC--cEEEEeCCCCC
Q 024372           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADF--TAKLWDALTGD   94 (268)
Q Consensus        17 ~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~--~v~iw~~~~~~   94 (268)
                      .....++|+   ++|+++++...++.|+.||..+++......... ... +++++++..++.+..++  .|.+++...+.
T Consensus       131 ~~P~~la~d---~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~-~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~  205 (409)
T 3hrp_A          131 KYMWGIAAV---GNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK-GGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGW  205 (409)
T ss_dssp             CCEEEEEEC---STTEEEEEETTTTEEEEEETTTTEEEEEEETCC-BCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred             CCceEEEEe---CCCCEEEEecCCCcEEEEECCCCEEEEeeccCC-CCc-eeEecCCCcEEEEecCCCceEEEEEcCCCc
Confidence            356688887   488888888888999999998887665544432 233 88999999888777655  78888887655


Q ss_pred             eeeee----c-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeE---ecCCcccE--EEEEEeCCCCcEEEEe
Q 024372           95 EKHSF----E-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE---VGNSSGSI--RTVAWLHSDQTILSSC  164 (268)
Q Consensus        95 ~~~~~----~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~---~~~~~~~v--~~~~~~~~~~~~~~~~  164 (268)
                      ....+    . ....+..++++|++..|+.+..++.|..||..........   .....+..  ..+++.|.++.++++.
T Consensus       206 ~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d  285 (409)
T 3hrp_A          206 APTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSD  285 (409)
T ss_dssp             CEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEE
T ss_pred             eeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEe
Confidence            43333    2 3345678999995445555677889999998754321110   11111222  2789999777788777


Q ss_pred             eCCCeEEEEeCCCCceEEeecC---------------CCCEEEEEECCCCcEEEEe--CCCeEEEEeCCCceeeeEEeCC
Q 024372          165 TDSGGVRLWDARSGKIVQTLET---------------KSPVTSAEVSRDGRYITTA--DGSSVKFWDANHFGLVKGYNMP  227 (268)
Q Consensus       165 ~~d~~i~iwd~~~~~~~~~~~~---------------~~~v~~~~~s~~g~~l~~~--~~~~v~~wd~~~~~~~~~~~~~  227 (268)
                      ...+.|+.||.... .......               -.....++++|+|+++++.  .++.|+.||+..+.. .++...
T Consensus       286 ~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~  363 (409)
T 3hrp_A          286 QNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQ  363 (409)
T ss_dssp             TTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEEC
T ss_pred             CCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCC
Confidence            77789999997643 2221111               1247899999999877664  468999999766543 333221


Q ss_pred             ----------------CCceeeEEcCCCCCEEEeccCCCeEEEEEC
Q 024372          228 ----------------CNTESASLEPKLGNIFIAGGEDMWVHVFDF  257 (268)
Q Consensus       228 ----------------~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~  257 (268)
                                      ..+..+++.++ |.++++-..+..|+.+++
T Consensus       364 ~~~~g~~~g~~~~~~~~~P~giavd~~-g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          364 VDVASQIDGTPLEATFNYPYDICYDGE-GGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             TTCBSCCCBSTTTCCBSSEEEEEECSS-SEEEEEESTTCEEEEEEE
T ss_pred             CCCCCcCCCChhceEeCCceEEEEcCC-CCEEEEECCCCeEEEEEe
Confidence                            12455666764 888888888888888764

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.54  E-value=5.4e-12  Score=115.88  Aligned_cols=239  Identities=16%  Similarity=0.088  Sum_probs=150.7

Q ss_pred             ecCCCeeeEEEecCCCCCcEEEE-----EeCCCCeEEeeCCCCCeEEE-eeCccCcEEEEEecCCCcEEEEeeCCC----
Q 024372           14 GHSRPVVDLFYSPITPDGFFLVS-----ASKDSSPMLRNGETGDWIGT-FEGHKGAVWSCCLDANALFSASGSADF----   83 (268)
Q Consensus        14 ~h~~~v~~~~f~~~~~dg~~l~s-----~s~d~~i~iw~~~~~~~~~~-~~~h~~~V~~~~~~~~~~~l~s~s~D~----   83 (268)
                      +|...+.+++|+   |||++||-     |+...+|++||+.+|+.+.. +.+.  ....++|+ |++.|+.++.+.    
T Consensus       126 ~~~~~l~~~~~S---pDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~  199 (693)
T 3iuj_A          126 DGTTALDQLSFS---RDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDV--KFSGISWL-GNEGFFYSSYDKPDGS  199 (693)
T ss_dssp             TSCCEEEEEEEC---TTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEE--ESCCCEEE-TTTEEEEEESSCCC--
T ss_pred             CCcEEEEEEEEC---CCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCc--eeccEEEe-CCCEEEEEEecCcccc
Confidence            455567788887   59998883     34446789999999986543 2211  12467899 999888877764    


Q ss_pred             ---------cEEEEeCCCCCe--eeeec----cCCeEEEEEECCCCCEEEEee----CCCeEEEEECCCCCCCCeEecCC
Q 024372           84 ---------TAKLWDALTGDE--KHSFE----HKHIVRACAFSEDTHLLLTGG----FEKILRIFDLNRPDAPPREVGNS  144 (268)
Q Consensus        84 ---------~v~iw~~~~~~~--~~~~~----~~~~v~~v~~~~~~~~l~s~~----~d~~i~~~d~~~~~~~~~~~~~~  144 (268)
                               .|++|++.+...  ...+.    +......+.++||++.|+...    ..+.+.++|+..+......+..+
T Consensus       200 ~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~  279 (693)
T 3iuj_A          200 ELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGD  279 (693)
T ss_dssp             -----CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECS
T ss_pred             cccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCC
Confidence                     399999987653  22232    233467889999999775432    33589999987664344444444


Q ss_pred             cccEEEEEEeCCCCcEEEEeeCC---CeEEEEeCCCCce--EEee-cCCCCEEEEEECCCCcEEEEe--CCC--eEEEEe
Q 024372          145 SGSIRTVAWLHSDQTILSSCTDS---GGVRLWDARSGKI--VQTL-ETKSPVTSAEVSRDGRYITTA--DGS--SVKFWD  214 (268)
Q Consensus       145 ~~~v~~~~~~~~~~~~~~~~~~d---~~i~iwd~~~~~~--~~~~-~~~~~v~~~~~s~~g~~l~~~--~~~--~v~~wd  214 (268)
                      ....... +.++++.++.....+   +.|..+|+.++..  .+.+ .+...+.  .++++++.|+..  .++  .|++||
T Consensus       280 ~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d  356 (693)
T 3iuj_A          280 LDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFD  356 (693)
T ss_dssp             SSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEEC
T ss_pred             CCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEE
Confidence            4444443 456666666555443   5799999988754  2333 3333444  899998876543  343  688999


Q ss_pred             CCCceeeeEEeCCCCc--eeeEEcCCCCCEEEeccC---CCeEEEEECCCCcE
Q 024372          215 ANHFGLVKGYNMPCNT--ESASLEPKLGNIFIAGGE---DMWVHVFDFHTGEQ  262 (268)
Q Consensus       215 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~gs~---d~~i~~wd~~~g~~  262 (268)
                      +... ..+....+...  ..+...++.+.++++.+.   -..|+.||+.+|+.
T Consensus       357 ~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~  408 (693)
T 3iuj_A          357 YEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI  408 (693)
T ss_dssp             TTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred             CCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence            8743 34444443322  223334443445444433   27899999987764

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.54  E-value=1.3e-11  Score=110.40  Aligned_cols=192  Identities=16%  Similarity=0.129  Sum_probs=143.7

Q ss_pred             CCCcEEEEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECC--CCCCCCeEecCCcccE
Q 024372           71 ANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLN--RPDAPPREVGNSSGSI  148 (268)
Q Consensus        71 ~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~--~~~~~~~~~~~~~~~v  148 (268)
                      +.+.++++...+++|.++|..+++.+..+.....+..+.|+|+++++++++.|+.|.+||+.  +.+. ...+.. ....
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~-v~~i~~-G~~P  242 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT-VAEIKI-GSEA  242 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE-EEEEEC-CSEE
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcE-eEEEec-CCCC
Confidence            44567788889999999999999999888877778899999999999999999999999985  3322 223322 2235


Q ss_pred             EEEEEe----CCCCcEEEEeeCCCeEEEEeCCCCceEEeecCC------------CCEEEEEECCCCcEEE-E-eCCCeE
Q 024372          149 RTVAWL----HSDQTILSSCTDSGGVRLWDARSGKIVQTLETK------------SPVTSAEVSRDGRYIT-T-ADGSSV  210 (268)
Q Consensus       149 ~~~~~~----~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~------------~~v~~~~~s~~g~~l~-~-~~~~~v  210 (268)
                      ..++++    |++..+++++..+++|.++|..+.+.++++...            ..+..+..++++..++ . .+.+.|
T Consensus       243 ~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v  322 (567)
T 1qks_A          243 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI  322 (567)
T ss_dssp             EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred             ceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeE
Confidence            678998    588888888888899999999999998876531            2577888899876543 3 356899


Q ss_pred             EEEeCCCceee--eEEeCCCCceeeEEcCCCCCEEEec-cCCCeEEEEECCCCcEEee
Q 024372          211 KFWDANHFGLV--KGYNMPCNTESASLEPKLGNIFIAG-GEDMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       211 ~~wd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g-s~d~~i~~wd~~~g~~~~~  265 (268)
                      .++|....+.+  ..+..........+.+ ++++|+++ ..+..|.++|+++++.+..
T Consensus       323 ~~vd~~~~~~~~v~~i~~~~~~~d~~~~p-dgr~~~va~~~sn~V~ViD~~t~kl~~~  379 (567)
T 1qks_A          323 LLVDYTDLNNLKTTEISAERFLHDGGLDG-SHRYFITAANARNKLVVIDTKEGKLVAI  379 (567)
T ss_dssp             EEEETTCSSEEEEEEEECCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred             EEEecCCCccceeeeeeccccccCceECC-CCCEEEEEeCCCCeEEEEECCCCcEEEE
Confidence            99998765433  2333333344566777 67776654 4677899999999987654

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.53  E-value=2.7e-12  Score=108.81  Aligned_cols=239  Identities=14%  Similarity=0.088  Sum_probs=156.8

Q ss_pred             eEEEecCCCCCcEEEEEe----------CCCCeEEeeCCCCCeEEEeeCcc-------CcEEEEEecCCCcEEEEeeC--
Q 024372           21 DLFYSPITPDGFFLVSAS----------KDSSPMLRNGETGDWIGTFEGHK-------GAVWSCCLDANALFSASGSA--   81 (268)
Q Consensus        21 ~~~f~~~~~dg~~l~s~s----------~d~~i~iw~~~~~~~~~~~~~h~-------~~V~~~~~~~~~~~l~s~s~--   81 (268)
                      .++++|   ||++|..+.          .+..|.+||..+++.+.++.-..       ..-..++++||+++++.+..  
T Consensus        82 ~va~sp---DG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~  158 (386)
T 3sjl_D           82 NPVVAD---DGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSP  158 (386)
T ss_dssp             EEEECT---TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSS
T ss_pred             cEEECC---CCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCC
Confidence            388874   999887775          36789999999999988885211       13345789999998876653  


Q ss_pred             CCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecC----CcccEE-EEEEeCC
Q 024372           82 DFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN----SSGSIR-TVAWLHS  156 (268)
Q Consensus        82 D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~----~~~~v~-~~~~~~~  156 (268)
                      ++.|.++|+.+++.+.++..+...  ..+....+.+++.+.||.+-+.++............    ...++. ...|...
T Consensus       159 ~~~VsVID~~t~~vv~tI~v~g~~--~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~  236 (386)
T 3sjl_D          159 APAVGVVDLEGKAFKRMLDVPDCY--HIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQK  236 (386)
T ss_dssp             SCEEEEEETTTTEEEEEEECCSEE--EEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETT
T ss_pred             CCeEEEEECCCCcEEEEEECCCcc--eeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcC
Confidence            689999999999998888654431  112223445556667777777776542111111100    111221 1344444


Q ss_pred             CCcEEEEeeCCCeEEEEeCCCCc--eEEeec--------C---CCCEEEEEECCCCcEEEEe--C---------CCeEEE
Q 024372          157 DQTILSSCTDSGGVRLWDARSGK--IVQTLE--------T---KSPVTSAEVSRDGRYITTA--D---------GSSVKF  212 (268)
Q Consensus       157 ~~~~~~~~~~d~~i~iwd~~~~~--~~~~~~--------~---~~~v~~~~~s~~g~~l~~~--~---------~~~v~~  212 (268)
                      ++.++.. +.+|+|.+.|+.++.  .+..+.        .   ......++++|+++.+...  .         ...|-+
T Consensus       237 dG~~~~v-s~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~v  315 (386)
T 3sjl_D          237 AGRLVWP-TYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVV  315 (386)
T ss_dssp             TTEEEEE-BTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEE
T ss_pred             CCcEEEE-eCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEE
Confidence            4544433 346899999997664  333322        0   1223457789988765432  1         247999


Q ss_pred             EeCCCceeeeEEeCCCCceeeEEcCCCCC-EEEe-ccCCCeEEEEECCCCcEEeec
Q 024372          213 WDANHFGLVKGYNMPCNTESASLEPKLGN-IFIA-GGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       213 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-gs~d~~i~~wd~~~g~~~~~~  266 (268)
                      .|+.+++.++.+........+.++++ ++ +|++ ...++.|.++|..+++.+...
T Consensus       316 iD~~t~kv~~~i~vg~~~~~lavs~D-~~~~ly~tn~~~~~VsViD~~t~k~~~~i  370 (386)
T 3sjl_D          316 LDAKTGERLAKFEMGHEIDSINVSQD-EKPLLYALSTGDKTLYIHDAESGEELRSV  370 (386)
T ss_dssp             EETTTCCEEEEEEEEEEECEEEECSS-SSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             EECCCCeEEEEEECCCCcceEEECCC-CCeEEEEEcCCCCeEEEEECCCCcEEEEe
Confidence            99999999999888767778888884 54 5554 566889999999999988753

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.52  E-value=4.2e-10  Score=91.74  Aligned_cols=237  Identities=8%  Similarity=-0.009  Sum_probs=162.6

Q ss_pred             ecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEE-EeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCC
Q 024372           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIG-TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT   92 (268)
Q Consensus        14 ~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~-~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~   92 (268)
                      .....+.++++.+   +|++.++...++.|.+++.. ++... .+..+...+..+++.+++.+.++...++.|..+|.. 
T Consensus        17 ~~~~~p~~i~~d~---~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-   91 (300)
T 2qc5_A           17 IPDSGPYGITSSE---DGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-   91 (300)
T ss_dssp             STTCCEEEEEECT---TSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred             CCCCCcceeeECC---CCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-
Confidence            4456778998874   88888877788999999988 76543 223344678899999999887777778899999987 


Q ss_pred             CCeeee-ec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeE
Q 024372           93 GDEKHS-FE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (268)
Q Consensus        93 ~~~~~~-~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i  170 (268)
                      +..... .. ....+..+.+.+++++.++...++.|..+|.. ++...............+++.+++. +.++...++.|
T Consensus        92 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i  169 (300)
T 2qc5_A           92 GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNA-LWFTENQNNSI  169 (300)
T ss_dssp             SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTEE
T ss_pred             CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCC-EEEEecCCCeE
Confidence            544322 11 23567889999999988877778889999875 3321111122334577888877665 55555556899


Q ss_pred             EEEeCCCCceEEe-ec-CCCCEEEEEECCCCcEEEEeC-CCeEEEEeCCCceeeeEEeCC---CCceeeEEcCCCCCEEE
Q 024372          171 RLWDARSGKIVQT-LE-TKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMP---CNTESASLEPKLGNIFI  244 (268)
Q Consensus       171 ~iwd~~~~~~~~~-~~-~~~~v~~~~~s~~g~~l~~~~-~~~v~~wd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  244 (268)
                      ..+|. +++.... .. ....+..++++++|++.++.. ++.|..||. ... +..+..+   ..+..+.+.+ +|++++
T Consensus       170 ~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~-~~~~~~~~~~~~~~~i~~d~-~g~l~v  245 (300)
T 2qc5_A          170 GRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGE-ISEYDIPTPNARPHAITAGK-NSEIWF  245 (300)
T ss_dssp             EEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC-EEEEECSSTTCCEEEEEECS-TTCEEE
T ss_pred             EEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCc-EEEEECCCCCCCceEEEECC-CCCEEE
Confidence            99998 5655432 21 234588999999998877764 568999998 333 2233322   2345566666 588777


Q ss_pred             eccCCCeEEEEECCCCcE
Q 024372          245 AGGEDMWVHVFDFHTGEQ  262 (268)
Q Consensus       245 ~gs~d~~i~~wd~~~g~~  262 (268)
                      +...++.|..||. +|+.
T Consensus       246 ~~~~~~~i~~~~~-~g~~  262 (300)
T 2qc5_A          246 TEWGANQIGRITN-DNTI  262 (300)
T ss_dssp             EETTTTEEEEECT-TSCE
T ss_pred             eccCCCeEEEECC-CCcE
Confidence            7777788999997 4554

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.51  E-value=1.1e-10  Score=95.97  Aligned_cols=226  Identities=11%  Similarity=0.046  Sum_probs=151.6

Q ss_pred             cCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCC
Q 024372           15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD   94 (268)
Q Consensus        15 h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~   94 (268)
                      +..---+..|+|  .++.++++...++.|..|+..+++.. .+. ....+..+++++++.++++.  +..|.+||..++.
T Consensus        11 ~~~~~Egp~w~~--~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~   84 (297)
T 3g4e_A           11 NCRCGESPVWEE--VSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVALRQSGGYVATI--GTKFCALNWKEQS   84 (297)
T ss_dssp             CCSBEEEEEEET--TTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTE
T ss_pred             CCccccCCeEEC--CCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCCceEEEEECCCCCEEEEE--CCeEEEEECCCCc
Confidence            333444788886  35677888888899999999888653 333 34678999999999966554  5689999998776


Q ss_pred             eeeeecc-----CCeEEEEEECCCCCEEEEeeCC---------CeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcE
Q 024372           95 EKHSFEH-----KHIVRACAFSEDTHLLLTGGFE---------KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTI  160 (268)
Q Consensus        95 ~~~~~~~-----~~~v~~v~~~~~~~~l~s~~~d---------~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  160 (268)
                      .......     ...++.+.++|++++.++....         ..-.+|.+.... ............+.++|+|++..+
T Consensus        85 ~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~~~~~pngi~~spdg~~l  163 (297)
T 3g4e_A           85 AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH-HVKKYFDQVDISNGLDWSLDHKIF  163 (297)
T ss_dssp             EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-CEEEEEEEESBEEEEEECTTSCEE
T ss_pred             EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-CEEEEeeccccccceEEcCCCCEE
Confidence            5433321     2347889999999977654321         223455443221 122222222345788999988877


Q ss_pred             EEEeeCCCeEEEEeC--CCCceE-----EeecC-CCCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeCCC-Cc
Q 024372          161 LSSCTDSGGVRLWDA--RSGKIV-----QTLET-KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPC-NT  230 (268)
Q Consensus       161 ~~~~~~d~~i~iwd~--~~~~~~-----~~~~~-~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~~-~~  230 (268)
                      +++.+.++.|.+||+  .+++..     ..+.. ...+..++++++|++.++. .++.|..||..+++.+..+..+. .+
T Consensus       164 yv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~  243 (297)
T 3g4e_A          164 YYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKT  243 (297)
T ss_dssp             EEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBE
T ss_pred             EEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCc
Confidence            777777789999987  555432     22221 2457889999999887765 56789999998888888888773 56


Q ss_pred             eeeEEc-CCCCCEEEecc
Q 024372          231 ESASLE-PKLGNIFIAGG  247 (268)
Q Consensus       231 ~~~~~~-~~~~~~~~~gs  247 (268)
                      .++++. ++.+.++++.+
T Consensus       244 t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          244 TSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             EEEEEESGGGCEEEEEEB
T ss_pred             eEEEEeCCCCCEEEEEcC
Confidence            677776 43345556544

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.51  E-value=6.2e-12  Score=101.50  Aligned_cols=198  Identities=8%  Similarity=-0.077  Sum_probs=136.7

Q ss_pred             cCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEee-CccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCC
Q 024372           15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE-GHKGAVWSCCLDANALFSASGSADFTAKLWDALTG   93 (268)
Q Consensus        15 h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~   93 (268)
                      +...+.++++.|   +|+++++.. ++.|.+|+...+... .+. .....+..+++.+++.++++...++.|.+|+..+.
T Consensus        65 ~~~~p~~i~~~~---~g~l~v~~~-~~~i~~~d~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~  139 (270)
T 1rwi_B           65 GLYQPQGLAVDG---AGTVYVTDF-NNRVVTLAAGSNNQT-VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSK  139 (270)
T ss_dssp             SCCSCCCEEECT---TCCEEEEET-TTEEEEECTTCSCCE-ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCC
T ss_pred             CcCCcceeEECC---CCCEEEEcC-CCEEEEEeCCCceEe-eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCc
Confidence            334677899974   787666555 888999998765433 333 23356889999999988888777889999986554


Q ss_pred             Ceeeee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEE
Q 024372           94 DEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRL  172 (268)
Q Consensus        94 ~~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~i  172 (268)
                      ...... .....+..++++++++++++...++.|..||....... ............+++.+++ .++++...++.|.+
T Consensus       140 ~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~-~~~~~~~~~p~~i~~d~~g-~l~v~~~~~~~v~~  217 (270)
T 1rwi_B          140 TQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV-VLPFTDITAPWGIAVDEAG-TVYVTEHNTNQVVK  217 (270)
T ss_dssp             SCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEE-ECCCSSCCSEEEEEECTTC-CEEEEETTTSCEEE
T ss_pred             eeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceE-eecccCCCCceEEEECCCC-CEEEEECCCCcEEE
Confidence            433222 12235678899999998877777889999997643211 1111222457788888776 66666666689999


Q ss_pred             EeCCCCceEEeecC-CCCEEEEEECCCCcEEEEe-CCCeEEEEeCCCce
Q 024372          173 WDARSGKIVQTLET-KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFG  219 (268)
Q Consensus       173 wd~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~  219 (268)
                      ||............ ...+.+++++|+|+++++. .++.|+++++...+
T Consensus       218 ~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          218 LLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             ECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred             EcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence            99976554332222 2458899999999876664 57899999986543

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.48  E-value=7.5e-11  Score=97.38  Aligned_cols=234  Identities=12%  Similarity=0.077  Sum_probs=153.7

Q ss_pred             EEeeecCCCeeeEEEecCCCCCc-EEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEE
Q 024372           10 LVCHGHSRPVVDLFYSPITPDGF-FLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLW   88 (268)
Q Consensus        10 ~~~~~h~~~v~~~~f~~~~~dg~-~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw   88 (268)
                      ..+..+....-+..|+|   +|+ ++++...++.+..|+. +++ ...+..+...+..+++++++.++++...++.|.+|
T Consensus        38 ~~l~~~~~~~egp~~~~---~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~  112 (305)
T 3dr2_A           38 LTLYDQATWSEGPAWWE---AQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRS  112 (305)
T ss_dssp             EEEECCCSSEEEEEEEG---GGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred             EEEecCCcCccCCeEeC---CCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEE
Confidence            33444555666888985   777 6778888899999987 565 34555566788999999999977766666889999


Q ss_pred             eCCCCCeeeeecc-----CCeEEEEEECCCCCEEEE----eeC-------------CCeEEEEECCCCCCCCeEecCCcc
Q 024372           89 DALTGDEKHSFEH-----KHIVRACAFSEDTHLLLT----GGF-------------EKILRIFDLNRPDAPPREVGNSSG  146 (268)
Q Consensus        89 ~~~~~~~~~~~~~-----~~~v~~v~~~~~~~~l~s----~~~-------------d~~i~~~d~~~~~~~~~~~~~~~~  146 (268)
                      +.. +........     ...++.+.+++++++.++    |..             .+.|..||..+++.  .... ...
T Consensus       113 ~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~--~~~~-~~~  188 (305)
T 3dr2_A          113 DAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL--QRMA-DLD  188 (305)
T ss_dssp             CTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC--EEEE-EES
T ss_pred             CCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE--EEEe-cCC
Confidence            975 443222211     123567899999998886    432             24577777644432  2222 233


Q ss_pred             cEEEEEEeCCCCcEEEEeeC-----CCeEEEEeCCCCce--EEeec--CCCCEEEEEECCCCcEEEEeCCCeEEEEeCCC
Q 024372          147 SIRTVAWLHSDQTILSSCTD-----SGGVRLWDARSGKI--VQTLE--TKSPVTSAEVSRDGRYITTADGSSVKFWDANH  217 (268)
Q Consensus       147 ~v~~~~~~~~~~~~~~~~~~-----d~~i~iwd~~~~~~--~~~~~--~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~  217 (268)
                      ....++|+|++..++++.+.     .+.|.+||+..+..  ...+.  .......++++++|++.++.. +.|.+||.. 
T Consensus       189 ~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~-~gv~~~~~~-  266 (305)
T 3dr2_A          189 HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSSG-TGVCVFDSD-  266 (305)
T ss_dssp             SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECCS-SEEEEECTT-
T ss_pred             CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEecC-CcEEEECCC-
Confidence            45778999988766665544     26899999875431  11111  123356789999999776664 469999984 


Q ss_pred             ceeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEE
Q 024372          218 FGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFD  256 (268)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd  256 (268)
                      .+.+..+..+..+..+++.+ +++.|..++.++ ++.++
T Consensus       267 g~~~~~~~~~~~~~~~~f~~-d~~~L~it~~~~-l~~~~  303 (305)
T 3dr2_A          267 GQLLGHIPTPGTASNCTFDQ-AQQRLFITGGPC-LWMLP  303 (305)
T ss_dssp             SCEEEEEECSSCCCEEEECT-TSCEEEEEETTE-EEEEE
T ss_pred             CCEEEEEECCCceeEEEEeC-CCCEEEEEcCCe-EEEEE
Confidence            56677777766666777775 566666555554 44443

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.45  E-value=1.8e-09  Score=87.94  Aligned_cols=231  Identities=7%  Similarity=0.015  Sum_probs=154.9

Q ss_pred             cCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEE-EeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCC
Q 024372           15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIG-TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG   93 (268)
Q Consensus        15 h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~-~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~   93 (268)
                      +...+.++++.   ++|++.++...++.|..+|.. ++... .+......+..+++.+++.+.++...++.|..++.. +
T Consensus        60 ~~~~~~~i~~~---~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g  134 (300)
T 2qc5_A           60 PDAKVMCLIVS---SLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-G  134 (300)
T ss_dssp             TTCCEEEEEEC---TTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-S
T ss_pred             CCCcceeEEEC---CCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-C
Confidence            34567888887   478877777667889999987 66532 222244678899999999888877778899999987 5


Q ss_pred             Ceeee-ec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEE
Q 024372           94 DEKHS-FE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR  171 (268)
Q Consensus        94 ~~~~~-~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~  171 (268)
                      ..... .. ....+..+.+.+++++.++...++.|..||. .++...............+++.+++ .+.++....+.|.
T Consensus       135 ~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~  212 (300)
T 2qc5_A          135 TIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDG-ALWFVEIMGNKIG  212 (300)
T ss_dssp             CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTS-SEEEEETTTTEEE
T ss_pred             CEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCC-CEEEEccCCCEEE
Confidence            44322 22 2346788999999997777666788999987 3322111111223457788887765 5655555557899


Q ss_pred             EEeCCCCceEEe-ec-CCCCEEEEEECCCCcEEEEeC-CCeEEEEeCCCceeeeEEeCC---CCceeeEEcCCCCCEEEe
Q 024372          172 LWDARSGKIVQT-LE-TKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMP---CNTESASLEPKLGNIFIA  245 (268)
Q Consensus       172 iwd~~~~~~~~~-~~-~~~~v~~~~~s~~g~~l~~~~-~~~v~~wd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  245 (268)
                      +||. +++.... +. ....+.+++++++|+++++.. ++.|..||.. . .+..+..+   ..+..+...+ +|.++++
T Consensus       213 ~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g-~~~~~~~~~~~~~~~~i~~~~-~g~l~v~  288 (300)
T 2qc5_A          213 RITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND-N-TIQEYQLQTENAEPHGITFGK-DGSVWFA  288 (300)
T ss_dssp             EECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-S-CEEEEECCSTTCCCCCEEECT-TSCEEEE
T ss_pred             EEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC-C-cEEEEECCccCCccceeEeCC-CCCEEEE
Confidence            9998 5554432 22 234588999999998777663 5899999984 3 33345443   2345566665 5887776


Q ss_pred             ccCCCeEEEEECC
Q 024372          246 GGEDMWVHVFDFH  258 (268)
Q Consensus       246 gs~d~~i~~wd~~  258 (268)
                      .. + .|..+|.+
T Consensus       289 ~~-~-~i~~~~p~  299 (300)
T 2qc5_A          289 LK-C-KIGKLNLN  299 (300)
T ss_dssp             CS-S-EEEEEEEC
T ss_pred             cc-C-ceEEeCCC
Confidence            65 5 67777753

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.44  E-value=3.8e-11  Score=111.02  Aligned_cols=231  Identities=12%  Similarity=0.038  Sum_probs=140.4

Q ss_pred             CCCcEEEEEeCCCC---eEEeeC--C---CCCeEEEe------eCccCcEEEEEecCCCcEEEEeeCC-----CcEEEEe
Q 024372           29 PDGFFLVSASKDSS---PMLRNG--E---TGDWIGTF------EGHKGAVWSCCLDANALFSASGSAD-----FTAKLWD   89 (268)
Q Consensus        29 ~dg~~l~s~s~d~~---i~iw~~--~---~~~~~~~~------~~h~~~V~~~~~~~~~~~l~s~s~D-----~~v~iw~   89 (268)
                      |+|.+++-...++.   -.+|..  .   .++...-+      .+|...+..++|+|||+++|.++.+     .+|++||
T Consensus       116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d  195 (741)
T 1yr2_A          116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG  195 (741)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred             EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence            68888887776654   566743  2   33322211      2344468889999999998876543     4699999


Q ss_pred             CCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCe--------------EEEEECCCCCCCCeEe-cC--CcccEEEEE
Q 024372           90 ALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKI--------------LRIFDLNRPDAPPREV-GN--SSGSIRTVA  152 (268)
Q Consensus        90 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~--------------i~~~d~~~~~~~~~~~-~~--~~~~v~~~~  152 (268)
                      +.+++......+...+..++|+|| +.|+.++.++.              |++|++.++....... ..  +...+..+.
T Consensus       196 l~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~  274 (741)
T 1yr2_A          196 VADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGAS  274 (741)
T ss_dssp             TTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEE
T ss_pred             CCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEE
Confidence            999887554222222356889999 88888776654              8889987553211222 21  222477889


Q ss_pred             EeCCCCcEEEEeeC----CCeEEEEeCCCC--ceEEee-cCCCCEEEEEECCCCcEEE-EeC----CCeEEEEeCCCc--
Q 024372          153 WLHSDQTILSSCTD----SGGVRLWDARSG--KIVQTL-ETKSPVTSAEVSRDGRYIT-TAD----GSSVKFWDANHF--  218 (268)
Q Consensus       153 ~~~~~~~~~~~~~~----d~~i~iwd~~~~--~~~~~~-~~~~~v~~~~~s~~g~~l~-~~~----~~~v~~wd~~~~--  218 (268)
                      |+|++..++.++.+    ...|++||+.++  ++...+ ......... ++|+|+.++ .++    ...|.+||+...  
T Consensus       275 ~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~  353 (741)
T 1yr2_A          275 VSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTP  353 (741)
T ss_dssp             ECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSC
T ss_pred             ECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCcc
Confidence            99998877766643    248999999877  413333 333333333 348887654 343    346999998764  


Q ss_pred             eeeeEEeCCCCce-eeEEcCCCCCEEEeccCCCeEEEEECC-CCcEE
Q 024372          219 GLVKGYNMPCNTE-SASLEPKLGNIFIAGGEDMWVHVFDFH-TGEQI  263 (268)
Q Consensus       219 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~gs~d~~i~~wd~~-~g~~~  263 (268)
                      .....+....... .+.+.  .+.++++...|+..++|.+. +|+.+
T Consensus       354 ~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~  398 (741)
T 1yr2_A          354 RFDTVVPESKDNLESVGIA--GNRLFASYIHDAKSQVLAFDLDGKPA  398 (741)
T ss_dssp             EEEEEECCCSSEEEEEEEE--BTEEEEEEEETTEEEEEEEETTSCEE
T ss_pred             ccEEEecCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCce
Confidence            2222232222222 23333  46777888888877776543 35543

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.44  E-value=3.4e-11  Score=102.15  Aligned_cols=230  Identities=16%  Similarity=0.165  Sum_probs=155.3

Q ss_pred             CCCcEEEEEeC-----CCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEee----------CCCcEEEEeCCCC
Q 024372           29 PDGFFLVSASK-----DSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS----------ADFTAKLWDALTG   93 (268)
Q Consensus        29 ~dg~~l~s~s~-----d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s----------~D~~v~iw~~~~~   93 (268)
                      |+|+.+..+..     ++.+.+.|..+++.+.++..-..+ . ++++||+++++.++          .++.|.+||..+.
T Consensus        42 pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~  119 (386)
T 3sjl_D           42 PDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL  119 (386)
T ss_dssp             CCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC
Confidence            68888888866     678999999999999999755555 4 99999998776554          4678999999999


Q ss_pred             CeeeeeccC--------CeEEEEEECCCCCEEEEeeC--CCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEE
Q 024372           94 DEKHSFEHK--------HIVRACAFSEDTHLLLTGGF--EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS  163 (268)
Q Consensus        94 ~~~~~~~~~--------~~v~~v~~~~~~~~l~s~~~--d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  163 (268)
                      +....+...        ..-..+.|+||+++++.+..  ++.+.++|+.+.+.. ..+... +   |....|.+...+++
T Consensus       120 ~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv-~tI~v~-g---~~~~~P~g~~~~~~  194 (386)
T 3sjl_D          120 LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFK-RMLDVP-D---CYHIFPTAPDTFFM  194 (386)
T ss_dssp             CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEE-EEEECC-S---EEEEEEEETTEEEE
T ss_pred             eEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEE-EEEECC-C---cceeecCCCceeEE
Confidence            988877532        13446889999999988864  689999999865432 233211 1   11223545444445


Q ss_pred             eeCCCeEEEEeCCC-CceEEeecC-----CCCE-EEEEE-CCCCcEEEEeCCCeEEEEeCCCc--eeeeEEeC-------
Q 024372          164 CTDSGGVRLWDARS-GKIVQTLET-----KSPV-TSAEV-SRDGRYITTADGSSVKFWDANHF--GLVKGYNM-------  226 (268)
Q Consensus       164 ~~~d~~i~iwd~~~-~~~~~~~~~-----~~~v-~~~~~-s~~g~~l~~~~~~~v~~wd~~~~--~~~~~~~~-------  226 (268)
                      .+.||++.+.++.+ ++...+...     ..++ ....| .++|+++..+.++.|.+.|+...  ..++.+..       
T Consensus       195 ~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~  274 (386)
T 3sjl_D          195 HCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERA  274 (386)
T ss_dssp             EETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHH
T ss_pred             ECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceecccccccc
Confidence            55679999999976 565332211     1122 22355 57898877777889999999654  23444431       


Q ss_pred             ----CCCceeeEEcCCCCCEEEeccC---------CCeEEEEECCCCcEEee
Q 024372          227 ----PCNTESASLEPKLGNIFIAGGE---------DMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       227 ----~~~~~~~~~~~~~~~~~~~gs~---------d~~i~~wd~~~g~~~~~  265 (268)
                          +.......+++..++++++-..         ...|.+.|+++++.+..
T Consensus       275 ~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~  326 (386)
T 3sjl_D          275 DGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAK  326 (386)
T ss_dssp             TTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEE
T ss_pred             ccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEE
Confidence                2334456666655566665321         25699999999998765

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.43  E-value=4.4e-12  Score=107.88  Aligned_cols=168  Identities=11%  Similarity=0.053  Sum_probs=123.0

Q ss_pred             CeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC-----------eEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEE
Q 024372           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD-----------WIGTFEGHKGAVWSCCLDANALFSASGSADFTAK   86 (268)
Q Consensus        18 ~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~-----------~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~   86 (268)
                      +++.++++|   .+.++++|+.++. ++|+.++.+           ..... .+.. |..++|  ++.+|+.+ .++.|+
T Consensus        39 ~~nlLais~---~~gll~a~~~~~l-~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~  109 (388)
T 1xip_A           39 SLQNLDISN---SKSLFVAASGSKA-VVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALY  109 (388)
T ss_dssp             CCBCEEEET---TTTEEEEEETTEE-EEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEE
T ss_pred             cccEEEEcC---CCCEEEEeCCCEE-EEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEE
Confidence            688999985   6678999999855 558644322           11122 3556 999999  88888888 889999


Q ss_pred             EEeCCCCCeeeee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEee
Q 024372           87 LWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT  165 (268)
Q Consensus        87 iw~~~~~~~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  165 (268)
                      +||+.+....... .+...+..+.+.+.  .+++++.||.+.+||+.....  ..   +...+++++|+|.+  ++ .+.
T Consensus       110 v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~--~~---~~~~Vs~v~WSpkG--~~-vg~  179 (388)
T 1xip_A          110 SLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKST--KQ---LAQNVTSFDVTNSQ--LA-VLL  179 (388)
T ss_dssp             EEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCE--EE---EEESEEEEEECSSE--EE-EEE
T ss_pred             EEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcc--cc---ccCCceEEEEcCCc--eE-EEE
Confidence            9998766543333 45666777776554  288889999999999975432  11   34579999999988  34 455


Q ss_pred             CCCeEEEEeCCCCce--EEee------c----CCCCEEEEEECCCCcEEEE
Q 024372          166 DSGGVRLWDARSGKI--VQTL------E----TKSPVTSAEVSRDGRYITT  204 (268)
Q Consensus       166 ~d~~i~iwd~~~~~~--~~~~------~----~~~~v~~~~~s~~g~~l~~  204 (268)
                      .||.+++|+...+++  ..++      .    +...|.++.|.+++.++++
T Consensus       180 ~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          180 KDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             TTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             cCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            679999999988775  5555      2    3456999999999999875

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.43  E-value=6.4e-10  Score=94.60  Aligned_cols=199  Identities=14%  Similarity=0.054  Sum_probs=127.0

Q ss_pred             eEEEecCCCCCcEEEEEe----------CCCCeEEeeCCCCCeEEEeeCc-------cCcEEEEEecCCCcEEEEeeC--
Q 024372           21 DLFYSPITPDGFFLVSAS----------KDSSPMLRNGETGDWIGTFEGH-------KGAVWSCCLDANALFSASGSA--   81 (268)
Q Consensus        21 ~~~f~~~~~dg~~l~s~s----------~d~~i~iw~~~~~~~~~~~~~h-------~~~V~~~~~~~~~~~l~s~s~--   81 (268)
                      .++|+|   ||++|..+.          .+..+.++|..+++.+.++.--       ...-..++++||+++++.++.  
T Consensus        70 ~i~~sp---Dg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~  146 (373)
T 2mad_H           70 NPVAAH---SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAA  146 (373)
T ss_pred             CeEECC---CCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCC
Confidence            888884   999999886          3678999999999888777432       122347889999999887764  


Q ss_pred             CCcEEEEeCCCCCeeee-eccCCeEEE--------EEECCCCCEEEE---------------------------------
Q 024372           82 DFTAKLWDALTGDEKHS-FEHKHIVRA--------CAFSEDTHLLLT---------------------------------  119 (268)
Q Consensus        82 D~~v~iw~~~~~~~~~~-~~~~~~v~~--------v~~~~~~~~l~s---------------------------------  119 (268)
                      +..|.++| .+++.... +..+..+..        +.+++++++++.                                 
T Consensus       147 ~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  225 (373)
T 2mad_H          147 GPAVGLVV-QGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSG  225 (373)
T ss_pred             CCeEEEEE-CCCCEEeEEcCCCceEEEEeCCCceEEEEcCCCCEEEEECCCcEEEEEeccccccCCcceeecceeEecCC
Confidence            57899999 99988777 654332111        112222221111                                 


Q ss_pred             ----eeCCCeEEEEECCCCCCCC-eEecC----------CcccEEEEEEeCCCCcEEEEee---------CCCeEEEEeC
Q 024372          120 ----GGFEKILRIFDLNRPDAPP-REVGN----------SSGSIRTVAWLHSDQTILSSCT---------DSGGVRLWDA  175 (268)
Q Consensus       120 ----~~~d~~i~~~d~~~~~~~~-~~~~~----------~~~~v~~~~~~~~~~~~~~~~~---------~d~~i~iwd~  175 (268)
                          .+..+.+.+.|+....... ..+..          .......+.+++++..++++..         ..+.|.+.|+
T Consensus       226 ~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~  305 (373)
T 2mad_H          226 RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTG  305 (373)
T ss_pred             EEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEEC
Confidence                1122233333332111000 00000          0011222566677666666543         1358999999


Q ss_pred             CCCceEEeecCCCCEEEEEECCCCc-EEEEe--CCCeEEEEeCCCceeeeE
Q 024372          176 RSGKIVQTLETKSPVTSAEVSRDGR-YITTA--DGSSVKFWDANHFGLVKG  223 (268)
Q Consensus       176 ~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~--~~~~v~~wd~~~~~~~~~  223 (268)
                      .+++.+.++........++|+|||+ ++.++  .++.|.++|+.+++.++.
T Consensus       306 ~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          306 LVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             CCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence            9999999987666688999999998 55554  378999999999988876

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.42  E-value=2.1e-11  Score=105.02  Aligned_cols=232  Identities=16%  Similarity=0.128  Sum_probs=149.7

Q ss_pred             CCCcEEEEEeCC-----CCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEee----------CCCcEEEEeCCCC
Q 024372           29 PDGFFLVSASKD-----SSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS----------ADFTAKLWDALTG   93 (268)
Q Consensus        29 ~dg~~l~s~s~d-----~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s----------~D~~v~iw~~~~~   93 (268)
                      +++..+..+...     ++|.+.|..+++.+.++..-..+  .++++||+++++.+.          .++.|.++|..++
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~  159 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF  159 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence            566666666553     58999999999999999754455  789999998776554          4679999999999


Q ss_pred             CeeeeeccC--------CeEEEEEECCCCCEEEEeeC--CCeEEEEECCCCCCCCeEecCCcc-------cEEEEEEeCC
Q 024372           94 DEKHSFEHK--------HIVRACAFSEDTHLLLTGGF--EKILRIFDLNRPDAPPREVGNSSG-------SIRTVAWLHS  156 (268)
Q Consensus        94 ~~~~~~~~~--------~~v~~v~~~~~~~~l~s~~~--d~~i~~~d~~~~~~~~~~~~~~~~-------~v~~~~~~~~  156 (268)
                      +....+...        .....+.|+||+++++.+..  ++.|.+.|+.+.+.. ..+.-...       ....+.++++
T Consensus       160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv-~~I~v~g~~~~~p~g~~~~v~~~~d  238 (426)
T 3c75_H          160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFD-RMLDVPDCYHIFPASPTVFYMNCRD  238 (426)
T ss_dssp             CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEE-EEEECCSEEEEEEEETTEEEEEETT
T ss_pred             cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEE-EEEEcCCceeeccCCCcEEEEEcCC
Confidence            988776532        22346789999999998874  578999998765432 22211000       0000122222


Q ss_pred             CC-------------------------------------cEEEEeeCCCeEEEEeCCCCceE--EeecC-----------
Q 024372          157 DQ-------------------------------------TILSSCTDSGGVRLWDARSGKIV--QTLET-----------  186 (268)
Q Consensus       157 ~~-------------------------------------~~~~~~~~d~~i~iwd~~~~~~~--~~~~~-----------  186 (268)
                      +.                                     .++... ..+.+.+.|...+...  ..+..           
T Consensus       239 G~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s-~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~  317 (426)
T 3c75_H          239 GSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPT-YTGKIFQADLTAEGATFRAPIEALTEAERADDWR  317 (426)
T ss_dssp             SSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEB-TTSEEEEEEECSSCEEECCCEESSCTTTGGGTEE
T ss_pred             CCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEe-CCCcEEEEeccCCceEEeeeeeeccccccccccc
Confidence            22                                     122221 2234444444332211  11100           


Q ss_pred             CCCEEEEEECCCCcEEEEe-C----------CCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCC-EEEecc-CCCeEE
Q 024372          187 KSPVTSAEVSRDGRYITTA-D----------GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGN-IFIAGG-EDMWVH  253 (268)
Q Consensus       187 ~~~v~~~~~s~~g~~l~~~-~----------~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~gs-~d~~i~  253 (268)
                      ......++++|+++.+... .          ++.|.+.|+.+.+.++++.....+..+.+.+ +|+ ++++.. .++.|.
T Consensus       318 p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~sp-Dg~~~lyv~n~~s~~Vs  396 (426)
T 3c75_H          318 PGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQ-DAEPLLYALSAGTQTLH  396 (426)
T ss_dssp             ECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECC-SSSCEEEEEETTTTEEE
T ss_pred             cCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEcc-CCCEEEEEEcCCCCeEE
Confidence            0011226889997754332 1          2479999999999999998776677888888 466 666655 689999


Q ss_pred             EEECCCCcEEee
Q 024372          254 VFDFHTGEQIAI  265 (268)
Q Consensus       254 ~wd~~~g~~~~~  265 (268)
                      ++|+.+++.+..
T Consensus       397 VID~~t~kvv~t  408 (426)
T 3c75_H          397 IYDAATGEELRS  408 (426)
T ss_dssp             EEETTTCCEEEE
T ss_pred             EEECCCCCEEEE
Confidence            999999998865

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.41  E-value=1.7e-09  Score=90.10  Aligned_cols=220  Identities=9%  Similarity=-0.022  Sum_probs=144.0

Q ss_pred             eeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeee
Q 024372           19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHS   98 (268)
Q Consensus        19 v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~   98 (268)
                      .-+..|+|  .++.++++...++.|..|+..+++.. .+. +...+.++++++++.++++. . ..|.+||..++.....
T Consensus        51 ~egp~~~~--~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~~  124 (326)
T 2ghs_A           51 GEGPTFDP--ASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTLH  124 (326)
T ss_dssp             EEEEEEET--TTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEEE
T ss_pred             CcCCeEeC--CCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEEE
Confidence            34778886  23667777888899999999887643 333 34678999999999887754 3 3499999887775433


Q ss_pred             ecc-----CCeEEEEEECCCCCEEEEeeC------CCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCC
Q 024372           99 FEH-----KHIVRACAFSEDTHLLLTGGF------EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS  167 (268)
Q Consensus        99 ~~~-----~~~v~~v~~~~~~~~l~s~~~------d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d  167 (268)
                      ...     ...++.+.++|++++.++...      .+.|..++  .++  .............++|++++..++++.+.+
T Consensus       125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~--~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~  200 (326)
T 2ghs_A          125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGK--VTKLFADISIPNSICFSPDGTTGYFVDTKV  200 (326)
T ss_dssp             ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTE--EEEEEEEESSEEEEEECTTSCEEEEEETTT
T ss_pred             eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCc--EEEeeCCCcccCCeEEcCCCCEEEEEECCC
Confidence            321     135788999999997765432      23454555  222  122211223456789999887776666666


Q ss_pred             CeEEEEeCC--CC-c-----eEEeecC-CCCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeCCCC-ceeeEEc
Q 024372          168 GGVRLWDAR--SG-K-----IVQTLET-KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCN-TESASLE  236 (268)
Q Consensus       168 ~~i~iwd~~--~~-~-----~~~~~~~-~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~~~-~~~~~~~  236 (268)
                      +.|.+||+.  ++ +     .+..+.. ...+..++++++|+++++. .++.|..||. ..+.+..+..+.. +..+++.
T Consensus       201 ~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~  279 (326)
T 2ghs_A          201 NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFI  279 (326)
T ss_dssp             CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEE
T ss_pred             CEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEe
Confidence            899999986  55 3     2223322 2346789999999887765 4578999998 4566677776653 5566666


Q ss_pred             CCCCC-EEEeccCC
Q 024372          237 PKLGN-IFIAGGED  249 (268)
Q Consensus       237 ~~~~~-~~~~gs~d  249 (268)
                      .++++ ++++...+
T Consensus       280 g~d~~~L~vt~~~~  293 (326)
T 2ghs_A          280 GPDASRLLVTSARE  293 (326)
T ss_dssp             STTSCEEEEEEBCT
T ss_pred             cCCCCEEEEEecCC
Confidence            23454 44554433

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.41  E-value=9.8e-12  Score=105.72  Aligned_cols=169  Identities=13%  Similarity=0.060  Sum_probs=122.0

Q ss_pred             cEEEEEecCCCcEEEEeeCCCcEEEEeCCCCC-----------eeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEEC
Q 024372           63 AVWSCCLDANALFSASGSADFTAKLWDALTGD-----------EKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDL  131 (268)
Q Consensus        63 ~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~-----------~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~  131 (268)
                      ++..+++++...++++|+.+ .+++|++....           ......++. |..++|  ++++|+++ .++.|++||+
T Consensus        39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv  113 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL  113 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred             cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence            68889999999999999987 55569864322           223445667 999999  89999998 8899999998


Q ss_pred             CCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEeCCCeEE
Q 024372          132 NRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVK  211 (268)
Q Consensus       132 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~  211 (268)
                      .+-. .......+...+..+.+.++.   ++.++.||.|.+||+..++...   ....|.+++|||+| .+++..|+.++
T Consensus       114 ~sl~-~~~~~~~~~~~v~~i~~~~p~---~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG-~~vg~~dg~i~  185 (388)
T 1xip_A          114 EELS-EFRTVTSFEKPVFQLKNVNNT---LVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ-LAVLLKDRSFQ  185 (388)
T ss_dssp             SSTT-CEEEEEECSSCEEEEEECSSE---EEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE-EEEEETTSCEE
T ss_pred             hhhh-ccCccceeecceeeEEecCCC---EEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc-eEEEEcCCcEE
Confidence            7543 223333455678888777653   5556778999999999887654   23469999999999 55667789999


Q ss_pred             EEeCCCcee--eeEEe----------CCCCceeeEEcCCCCCEEEe
Q 024372          212 FWDANHFGL--VKGYN----------MPCNTESASLEPKLGNIFIA  245 (268)
Q Consensus       212 ~wd~~~~~~--~~~~~----------~~~~~~~~~~~~~~~~~~~~  245 (268)
                      +|+......  .+++.          ....+.++.|.+ .+.++++
T Consensus       186 ~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~-~~~flv~  230 (388)
T 1xip_A          186 SFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILS-PQDFLAV  230 (388)
T ss_dssp             EEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESS-SSEEEEE
T ss_pred             EEcCCCccccccceecCCcccccccCCCeeEEEEEEec-CCeEEEE
Confidence            998876654  44442          123355667776 4777775

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.36  E-value=4.9e-11  Score=101.01  Aligned_cols=226  Identities=8%  Similarity=-0.045  Sum_probs=145.8

Q ss_pred             EEEEEeCCC----CeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEee----------CCCcEEEEeCCCCCeeee
Q 024372           33 FLVSASKDS----SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS----------ADFTAKLWDALTGDEKHS   98 (268)
Q Consensus        33 ~l~s~s~d~----~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s----------~D~~v~iw~~~~~~~~~~   98 (268)
                      ..++-..+.    ++.+.|..+++.+.++..-..+  .+.++||+++++.+.          .+++|.+||..+++....
T Consensus        34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~  111 (368)
T 1mda_H           34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIAD  111 (368)
T ss_dssp             EEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEE
T ss_pred             EEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEE
Confidence            444444454    6679999999999999754456  699999998876664          478999999999999888


Q ss_pred             eccC--------CeEEEEEECCCCCEEEEeeC--CCeEEE--EECCCCCCCCeEecC------------------CcccE
Q 024372           99 FEHK--------HIVRACAFSEDTHLLLTGGF--EKILRI--FDLNRPDAPPREVGN------------------SSGSI  148 (268)
Q Consensus        99 ~~~~--------~~v~~v~~~~~~~~l~s~~~--d~~i~~--~d~~~~~~~~~~~~~------------------~~~~v  148 (268)
                      +...        .....+.++||+++++.+..  ++.+.+  +|+.+    ...+.-                  ..+.+
T Consensus       112 I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t----v~~i~v~~~~~~~p~g~~~~~~~~~dg~~  187 (368)
T 1mda_H          112 IELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD----DQLTKSASCFHIHPGAAATHYLGSCPASL  187 (368)
T ss_dssp             EEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE----EEEEECSSCCCCEEEETTEEECCCCTTSC
T ss_pred             EECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh----ceEEECCCceEEccCCCeEEEEEcCCCCE
Confidence            7543        23457889999999998874  467888  88743    111100                  00000


Q ss_pred             EEEEE--------------------------eCCCCcEEEEeeCCCeEEEEeCCCCc--eEEeecCC-----------CC
Q 024372          149 RTVAW--------------------------LHSDQTILSSCTDSGGVRLWDARSGK--IVQTLETK-----------SP  189 (268)
Q Consensus       149 ~~~~~--------------------------~~~~~~~~~~~~~d~~i~iwd~~~~~--~~~~~~~~-----------~~  189 (268)
                      ..+..                          .++++.++.+. . +.+.+.|+.+..  .+..+...           ..
T Consensus       188 ~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs-~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g  265 (368)
T 1mda_H          188 AASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV-A-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAG  265 (368)
T ss_dssp             EEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB-S-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECS
T ss_pred             EEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEc-C-CEEEEEECCCCcceEEEEEEeccccccccccccCc
Confidence            00100                          22222222222 2 556666765432  22222110           01


Q ss_pred             EEEEEECCCCcEEEE--e-C-------CCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEecc-CCCeEEEEECC
Q 024372          190 VTSAEVSRDGRYITT--A-D-------GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGG-EDMWVHVFDFH  258 (268)
Q Consensus       190 v~~~~~s~~g~~l~~--~-~-------~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs-~d~~i~~wd~~  258 (268)
                      ...++++|+++.+..  . .       +..+.++|+.+.+.++.+.....+..+.+.++...++++.. .++.|.++|+.
T Consensus       266 ~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~  345 (368)
T 1mda_H          266 FQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAA  345 (368)
T ss_dssp             SSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESS
T ss_pred             ceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECC
Confidence            112789999876543  2 1       23566999999998888877666778888874334677777 68999999999


Q ss_pred             CCcEEeec
Q 024372          259 TGEQIAIT  266 (268)
Q Consensus       259 ~g~~~~~~  266 (268)
                      +++.+...
T Consensus       346 t~kvv~~I  353 (368)
T 1mda_H          346 SDQDQSSV  353 (368)
T ss_dssp             SCEEEEEC
T ss_pred             CCcEEEEE
Confidence            99988653

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.33  E-value=1.9e-09  Score=92.75  Aligned_cols=197  Identities=13%  Similarity=0.118  Sum_probs=133.8

Q ss_pred             CcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCC--eEEEEECCCCCCCCe
Q 024372           62 GAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEK--ILRIFDLNRPDAPPR  139 (268)
Q Consensus        62 ~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~--~i~~~d~~~~~~~~~  139 (268)
                      .....+++++++.++++...++.|++||..++............. ++|+++++.|+.+..++  .|..++...... ..
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~-~~  208 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA-PT  208 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC-EE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce-eE
Confidence            356789999999988888888999999998877655544433334 88999999888888765  788888754332 12


Q ss_pred             Ee----cCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEe----ecCCCCE---EEEEECCC-CcEEEEe-C
Q 024372          140 EV----GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQT----LETKSPV---TSAEVSRD-GRYITTA-D  206 (268)
Q Consensus       140 ~~----~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~----~~~~~~v---~~~~~s~~-g~~l~~~-~  206 (268)
                      ..    .........+++.|+++.++++ ..++.|+.||..++.....    .......   ..++++|+ +.++++. .
T Consensus       209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~-d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~  287 (409)
T 3hrp_A          209 RIGQLGSTFSGKIGAVALDETEEWLYFV-DSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN  287 (409)
T ss_dssp             EEEECCTTSCSCCCBCEECTTSSEEEEE-CTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT
T ss_pred             EeeeccchhcCCcEEEEEeCCCCeEEEE-ECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC
Confidence            22    1123455678888866777664 4568999999987764332    2112112   28999995 6555554 4


Q ss_pred             CCeEEEEeCCCceeeeEEeCC----------------CCceeeEEcCCCCCEEEecc-CCCeEEEEECCCCcEEe
Q 024372          207 GSSVKFWDANHFGLVKGYNMP----------------CNTESASLEPKLGNIFIAGG-EDMWVHVFDFHTGEQIA  264 (268)
Q Consensus       207 ~~~v~~wd~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~gs-~d~~i~~wd~~~g~~~~  264 (268)
                      .+.|+.||....  +..+...                ..+..+++.+ +|+++++-+ .+..|+.|+..+|+...
T Consensus       288 ~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~-dG~lyvad~~~~~~I~~~~~~~G~v~~  359 (409)
T 3hrp_A          288 LSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDE-DGNFYIVDGFKGYCLRKLDILDGYVST  359 (409)
T ss_dssp             TTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECT-TCCEEEEETTTTCEEEEEETTTTEEEE
T ss_pred             CCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeC-CCCEEEEeCCCCCEEEEEECCCCEEEE
Confidence            678999997643  2222111                1245566776 588888888 89999999987777543

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.33  E-value=4.7e-10  Score=92.31  Aligned_cols=196  Identities=10%  Similarity=0.087  Sum_probs=128.7

Q ss_pred             cCCCeeeEEEecCCCC-CcEEEEEeCCCCeEEeeCCCCCeEEE-eeC----ccCcEEEEEecCCCcEEEEeeCC------
Q 024372           15 HSRPVVDLFYSPITPD-GFFLVSASKDSSPMLRNGETGDWIGT-FEG----HKGAVWSCCLDANALFSASGSAD------   82 (268)
Q Consensus        15 h~~~v~~~~f~~~~~d-g~~l~s~s~d~~i~iw~~~~~~~~~~-~~~----h~~~V~~~~~~~~~~~l~s~s~D------   82 (268)
                      +...+.+++++|   + |+++++.. ...+.+|+.. ++.... ...    +...+..+++++++.+.++...+      
T Consensus        69 ~~~~~~~i~~~~---~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~  143 (314)
T 1pjx_A           69 YGGIPAGCQCDR---DANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPAD  143 (314)
T ss_dssp             EECCEEEEEECS---SSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSC
T ss_pred             CCCCCceEEEec---CCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCccccccc
Confidence            446688899874   7 76555444 4478889988 776533 221    12357899999999887776655      


Q ss_pred             ---------CcEEEEeCCCCCeeeeeccCCeEEEEEEC----CCCCEEEE-eeCCCeEEEEECC-CCCCC----CeEecC
Q 024372           83 ---------FTAKLWDALTGDEKHSFEHKHIVRACAFS----EDTHLLLT-GGFEKILRIFDLN-RPDAP----PREVGN  143 (268)
Q Consensus        83 ---------~~v~iw~~~~~~~~~~~~~~~~v~~v~~~----~~~~~l~s-~~~d~~i~~~d~~-~~~~~----~~~~~~  143 (268)
                               +.|..++.. +..............++++    ++++.++. ...++.|.+||+. .+...    ......
T Consensus       144 ~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~  222 (314)
T 1pjx_A          144 YTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG  222 (314)
T ss_dssp             CCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCC
T ss_pred             ccccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCC
Confidence                     466667765 4443333333456788899    99865544 4567899999975 22110    011111


Q ss_pred             Cc-ccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCC-CCEEEEEECCCCcEE-EEe-CCCeEEEEeCCC
Q 024372          144 SS-GSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYI-TTA-DGSSVKFWDANH  217 (268)
Q Consensus       144 ~~-~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~s~~g~~l-~~~-~~~~v~~wd~~~  217 (268)
                      +. +....+++.+++ .+.++...++.|.+||.++++.+..+... ..+.+++++|+|+.| +++ .++.|..|++..
T Consensus       223 ~~~~~p~~i~~d~~G-~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          223 THEGGADGMDFDEDN-NLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             CSSCEEEEEEEBTTC-CEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CCCCCCCceEECCCC-CEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            22 456778888766 56656556689999999877776666543 568899999999844 444 356899999764

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.33  E-value=1.6e-12  Score=110.58  Aligned_cols=192  Identities=11%  Similarity=0.022  Sum_probs=110.4

Q ss_pred             CCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeeccC--CeEEE
Q 024372           30 DGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHK--HIVRA  107 (268)
Q Consensus        30 dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~--~~v~~  107 (268)
                      ++.++++++.|+.+..||..+|+.+-++..  +.+.+..+..++..+++++.|+.++.||..+++.+..+...  ..+.+
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            567899999999999999999998877765  45554445566767778889999999999888876555321  11110


Q ss_pred             -EEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecC
Q 024372          108 -CAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET  186 (268)
Q Consensus       108 -v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~  186 (268)
                       ..+. .+..+++++.++.+..||..+++........ .    ....+|.++.+++ ++.++.|+.||.++|+.+..+..
T Consensus        86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~-~----~~~~~p~~~~v~~-~~~dg~v~a~d~~tG~~~W~~~~  158 (369)
T 2hz6_A           86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSA-F----ADSLSPSTSLLYL-GRTEYTITMYDTKTRELRWNATY  158 (369)
T ss_dssp             CSCC------CCCCEEEEEEEEECCC---------------------------EEE-EEEEEEEECCCSSSSSCCCEEEE
T ss_pred             CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCC-C----cccccccCCEEEE-EecCCEEEEEECCCCCEEEeEec
Confidence             0011 3456778888999999999877654332211 1    1233455555554 45569999999999987655432


Q ss_pred             CCCEEEEEECCC----CcEEEEeCCCeEEEEeCCCceeeeEEeCCCCce
Q 024372          187 KSPVTSAEVSRD----GRYITTADGSSVKFWDANHFGLVKGYNMPCNTE  231 (268)
Q Consensus       187 ~~~v~~~~~s~~----g~~l~~~~~~~v~~wd~~~~~~~~~~~~~~~~~  231 (268)
                      .. .....++++    +.+++++.++.|..||.++++.+..+.......
T Consensus       159 ~~-~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~  206 (369)
T 2hz6_A          159 FD-YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVV  206 (369)
T ss_dssp             EE-ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEE
T ss_pred             cc-ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceE
Confidence            11 112233332    566777788999999999988887776554433

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.31  E-value=6.3e-10  Score=101.79  Aligned_cols=233  Identities=11%  Similarity=0.050  Sum_probs=152.9

Q ss_pred             CcEEEEEeCCCCeEEeeCCCCCeEEEeeCc-c----CcEEE-EEecCCCcEEEEee-----CCCcEEEEeCCCCCeeeee
Q 024372           31 GFFLVSASKDSSPMLRNGETGDWIGTFEGH-K----GAVWS-CCLDANALFSASGS-----ADFTAKLWDALTGDEKHSF   99 (268)
Q Consensus        31 g~~l~s~s~d~~i~iw~~~~~~~~~~~~~h-~----~~V~~-~~~~~~~~~l~s~s-----~D~~v~iw~~~~~~~~~~~   99 (268)
                      +..++.++.|+.+..+|..+|+.+-++..+ .    ..+.. ..+ .++..++..+     .++.|+.+|..+++.+..+
T Consensus       128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~  206 (677)
T 1kb0_A          128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW  206 (677)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEe
Confidence            457888999999999999999988766654 1    11111 111 1344444332     2799999999999987665


Q ss_pred             ccCCe---------------------------------EEEEEECCCCCEEEEeeCCC-------------------eEE
Q 024372          100 EHKHI---------------------------------VRACAFSEDTHLLLTGGFEK-------------------ILR  127 (268)
Q Consensus       100 ~~~~~---------------------------------v~~v~~~~~~~~l~s~~~d~-------------------~i~  127 (268)
                      .....                                 ...+.+++++.+++.+..++                   .|.
T Consensus       207 ~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~  286 (677)
T 1kb0_A          207 FSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIV  286 (677)
T ss_dssp             ESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred             ccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEE
Confidence            42110                                 12467888888888877654                   488


Q ss_pred             EEECCCCCCCCeEecC-Cc--------ccEEEEEEeCCCC--cEEEEeeCCCeEEEEeCCCCceEEeecCCC--------
Q 024372          128 IFDLNRPDAPPREVGN-SS--------GSIRTVAWLHSDQ--TILSSCTDSGGVRLWDARSGKIVQTLETKS--------  188 (268)
Q Consensus       128 ~~d~~~~~~~~~~~~~-~~--------~~v~~~~~~~~~~--~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~--------  188 (268)
                      .+|..+++........ +.        .++. +....++.  .+++.++.+|.+.++|.++|+.+..+....        
T Consensus       287 AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l-~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d  365 (677)
T 1kb0_A          287 ALDPDTGKYKWHYQETPGDNWDYTSTQPMIL-ADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYD  365 (677)
T ss_dssp             EECTTTCCEEEEEESSTTCCSCCCCCSCCEE-EEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEC
T ss_pred             EEECCCCCEEEEEecCCCcccccccCCCcEE-EecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccC
Confidence            8888877654433221 11        1211 22222332  456677788999999999999886654210        


Q ss_pred             ---C-------------------------EEEEEECCCCcEEEEe-C---------------------------------
Q 024372          189 ---P-------------------------VTSAEVSRDGRYITTA-D---------------------------------  206 (268)
Q Consensus       189 ---~-------------------------v~~~~~s~~g~~l~~~-~---------------------------------  206 (268)
                         .                         ...++++|+..++... .                                 
T Consensus       366 ~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~  445 (677)
T 1kb0_A          366 KHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKF  445 (677)
T ss_dssp             TTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEE
T ss_pred             CCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccc
Confidence               0                         1246788887665432 1                                 


Q ss_pred             ----------CCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEeec
Q 024372          207 ----------GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       207 ----------~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~~  266 (268)
                                .+.|..||+.+++.+-.+..........+.. .+.+++.++.|+.+++||.++|+++..+
T Consensus       446 ~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~-~g~~v~~g~~dg~l~a~D~~tG~~lw~~  514 (677)
T 1kb0_A          446 FNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEA  514 (677)
T ss_dssp             ECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEe-CCCEEEEECCCCcEEEEECCCCceeeee
Confidence                      1679999999998887776654444444444 4667777899999999999999998754

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.30  E-value=7.1e-10  Score=95.51  Aligned_cols=201  Identities=15%  Similarity=0.070  Sum_probs=132.3

Q ss_pred             eEEEecCCCCCcEEEEEe----------CCCCeEEeeCCCCCeEEEeeCc-------cCcEEEEEecCCCcEEEEeeC--
Q 024372           21 DLFYSPITPDGFFLVSAS----------KDSSPMLRNGETGDWIGTFEGH-------KGAVWSCCLDANALFSASGSA--   81 (268)
Q Consensus        21 ~~~f~~~~~dg~~l~s~s----------~d~~i~iw~~~~~~~~~~~~~h-------~~~V~~~~~~~~~~~l~s~s~--   81 (268)
                      .++++|   ||++|..+.          .++.|.++|..+++.++++.--       ...-..+.++||+++++.+..  
T Consensus       122 gia~Sp---Dgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~  198 (426)
T 3c75_H          122 HPVAAE---DGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSP  198 (426)
T ss_dssp             EEEECT---TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSS
T ss_pred             ceEECC---CCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCC
Confidence            788885   899888876          4678999999999998887521       122345689999998877664  


Q ss_pred             CCcEEEEeCCCCCeeeeeccCCeE--------EEEEECCCCCEEEEee--------------------------------
Q 024372           82 DFTAKLWDALTGDEKHSFEHKHIV--------RACAFSEDTHLLLTGG--------------------------------  121 (268)
Q Consensus        82 D~~v~iw~~~~~~~~~~~~~~~~v--------~~v~~~~~~~~l~s~~--------------------------------  121 (268)
                      ++.|.+.|+.+++.+..+.....+        ..+.+++++++++...                                
T Consensus       199 ~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~  278 (426)
T 3c75_H          199 APAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGR  278 (426)
T ss_dssp             SCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCE
T ss_pred             CCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCE
Confidence            578999999998887766543211        1133444444443332                                


Q ss_pred             -----CCCeEEEEECCCCCCCC-eEec----------CCcccEEEEEEeCCCCcEEEEee---------CCCeEEEEeCC
Q 024372          122 -----FEKILRIFDLNRPDAPP-REVG----------NSSGSIRTVAWLHSDQTILSSCT---------DSGGVRLWDAR  176 (268)
Q Consensus       122 -----~d~~i~~~d~~~~~~~~-~~~~----------~~~~~v~~~~~~~~~~~~~~~~~---------~d~~i~iwd~~  176 (268)
                           ..+.+.+.|........ ..+.          ........+++++++..++++..         ..+.|.+.|+.
T Consensus       279 ~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~  358 (426)
T 3c75_H          279 LVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAE  358 (426)
T ss_dssp             EEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETT
T ss_pred             EEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECC
Confidence                 23333444432111000 0000          00001112567777777766643         13589999999


Q ss_pred             CCceEEeecCCCCEEEEEECCCCc-EEEEe--CCCeEEEEeCCCceeeeEE
Q 024372          177 SGKIVQTLETKSPVTSAEVSRDGR-YITTA--DGSSVKFWDANHFGLVKGY  224 (268)
Q Consensus       177 ~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~--~~~~v~~wd~~~~~~~~~~  224 (268)
                      +.+.+.++........++|+|||+ ++.+.  .++.|.++|+.+++.++++
T Consensus       359 T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          359 TGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             TCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             CCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            999999987655688999999998 66554  3789999999999998886

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.28  E-value=1.9e-09  Score=98.86  Aligned_cols=235  Identities=13%  Similarity=0.096  Sum_probs=151.4

Q ss_pred             CcEEEEEeCCCCeEEeeCCCCCeEEEeeC--ccCcEEEEEecC---CCcEEEEee-----CCCcEEEEeCCCCCeeeeec
Q 024372           31 GFFLVSASKDSSPMLRNGETGDWIGTFEG--HKGAVWSCCLDA---NALFSASGS-----ADFTAKLWDALTGDEKHSFE  100 (268)
Q Consensus        31 g~~l~s~s~d~~i~iw~~~~~~~~~~~~~--h~~~V~~~~~~~---~~~~l~s~s-----~D~~v~iw~~~~~~~~~~~~  100 (268)
                      +..++.++.|+.+..+|..+|+.+-++..  +......+..+|   ++..++..+     .++.|+.||..+++.+-.+.
T Consensus       121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  200 (689)
T 1yiq_A          121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFY  200 (689)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence            45788899999999999999997755543  111111111122   455544332     37899999999999876653


Q ss_pred             cC--C------------------------------eEEEEEECCCCCEEEEeeCCCe-------------------EEEE
Q 024372          101 HK--H------------------------------IVRACAFSEDTHLLLTGGFEKI-------------------LRIF  129 (268)
Q Consensus       101 ~~--~------------------------------~v~~v~~~~~~~~l~s~~~d~~-------------------i~~~  129 (268)
                      ..  .                              ....++++|+..+++.+..++.                   |..+
T Consensus       201 ~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~Al  280 (689)
T 1yiq_A          201 TVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAV  280 (689)
T ss_dssp             SSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEE
T ss_pred             ccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence            10  0                              0124678888888888887753                   8899


Q ss_pred             ECCCCCCCCeEecC-Cc-------ccEEEEEEeCCCC--cEEEEeeCCCeEEEEeCCCCceEEeecCCC-----------
Q 024372          130 DLNRPDAPPREVGN-SS-------GSIRTVAWLHSDQ--TILSSCTDSGGVRLWDARSGKIVQTLETKS-----------  188 (268)
Q Consensus       130 d~~~~~~~~~~~~~-~~-------~~v~~~~~~~~~~--~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~-----------  188 (268)
                      |..+++........ +.       .+........++.  .+++.++.+|.++++|.++|+.+...+...           
T Consensus       281 D~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~  360 (689)
T 1yiq_A          281 NADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKT  360 (689)
T ss_dssp             ETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTT
T ss_pred             EccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccC
Confidence            99887654443321 21       1111111111222  256667788999999999999874322110           


Q ss_pred             -----------------------------CEEEEEECCCCcEEEEe-C--------------------------------
Q 024372          189 -----------------------------PVTSAEVSRDGRYITTA-D--------------------------------  206 (268)
Q Consensus       189 -----------------------------~v~~~~~s~~g~~l~~~-~--------------------------------  206 (268)
                                                   ....++++|+..++... .                                
T Consensus       361 ~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p  440 (689)
T 1yiq_A          361 GRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMP  440 (689)
T ss_dssp             TEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCC
T ss_pred             CCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccC
Confidence                                         12236788876655432 1                                


Q ss_pred             -------------CCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEeec
Q 024372          207 -------------GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       207 -------------~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~~  266 (268)
                                   ++.|+.||+.+++.+-.+..........+.. .+.++++|+.|+.++.||.++|+++-.+
T Consensus       441 ~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~  512 (689)
T 1yiq_A          441 EGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLST-AGNLVFEGSADGRVIAYAADTGEKLWEQ  512 (689)
T ss_dssp             SSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceE-CCCEEEEECCCCcEEEEECCCCccceee
Confidence                         2679999999998887776655444444444 4678888999999999999999998543

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.25  E-value=3.5e-10  Score=95.76  Aligned_cols=218  Identities=13%  Similarity=-0.042  Sum_probs=135.6

Q ss_pred             EEeeecCCCeeeEEEecCCCCCcEEEEEe----------CCCCeEEeeCCCCCeEEEeeCcc-------CcEEEEEecCC
Q 024372           10 LVCHGHSRPVVDLFYSPITPDGFFLVSAS----------KDSSPMLRNGETGDWIGTFEGHK-------GAVWSCCLDAN   72 (268)
Q Consensus        10 ~~~~~h~~~v~~~~f~~~~~dg~~l~s~s----------~d~~i~iw~~~~~~~~~~~~~h~-------~~V~~~~~~~~   72 (268)
                      ..+..-..|  .+.|+|   ||++|..+.          .+++|.+||..+++.++++.-+.       ..-..++++||
T Consensus        60 ~~i~vG~~P--~i~~sp---Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpD  134 (368)
T 1mda_H           60 GHSLGAFLS--LAVAGH---SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCAS  134 (368)
T ss_dssp             EEEEECTTC--EEEECT---TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTT
T ss_pred             EEEeCCCCC--ceEECC---CCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCC
Confidence            334333345  689985   898898886          47889999999999999986331       22456789999


Q ss_pred             CcEEEEeeC--CCcEEE--EeCCCCCeeeeeccCCe-----E---EEEEECCCC--------------------------
Q 024372           73 ALFSASGSA--DFTAKL--WDALTGDEKHSFEHKHI-----V---RACAFSEDT--------------------------  114 (268)
Q Consensus        73 ~~~l~s~s~--D~~v~i--w~~~~~~~~~~~~~~~~-----v---~~v~~~~~~--------------------------  114 (268)
                      +++++.+..  +..+.+  +|..+   ...+..+..     .   ..+.+++++                          
T Consensus       135 Gk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~  211 (368)
T 1mda_H          135 SACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQN  211 (368)
T ss_dssp             SSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSC
T ss_pred             CCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeee
Confidence            998877664  467888  99866   222211100     0   001122222                          


Q ss_pred             -----------CEEEEeeCCCeEEEEECCCCCCCC-eEecC------Ccc----cEEEEEEeCCCCcEEEEee---C---
Q 024372          115 -----------HLLLTGGFEKILRIFDLNRPDAPP-REVGN------SSG----SIRTVAWLHSDQTILSSCT---D---  166 (268)
Q Consensus       115 -----------~~l~s~~~d~~i~~~d~~~~~~~~-~~~~~------~~~----~v~~~~~~~~~~~~~~~~~---~---  166 (268)
                                 ..++..+. +.+.+.|........ ..+..      ..+    ....+.+.+++..++++..   .   
T Consensus       212 vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~  290 (368)
T 1mda_H          212 CSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCL  290 (368)
T ss_dssp             BCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTT
T ss_pred             CCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCccc
Confidence                       22222223 455555553211000 00000      000    0111567888887776544   2   


Q ss_pred             --CCeEEEEeCCCCceEEeecCCCCEEEEEECCCCc-EEEE-e-CCCeEEEEeCCCceeeeEEeCCCCceeeEEc
Q 024372          167 --SGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGR-YITT-A-DGSSVKFWDANHFGLVKGYNMPCNTESASLE  236 (268)
Q Consensus       167 --d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~-~-~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~  236 (268)
                        ++.+.++|+.+++.+.++........++++|||+ ++++ . .++.|.++|+.+++.++++.....+..+.+.
T Consensus       291 ~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P~~i~~~  365 (368)
T 1mda_H          291 AAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESLSVQ  365 (368)
T ss_dssp             SCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCCEEECC
T ss_pred             ccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCCCEEEee
Confidence              2356699999999999887655688999999997 3444 4 4799999999999999988876666655554

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.23  E-value=1.9e-09  Score=99.02  Aligned_cols=199  Identities=14%  Similarity=0.068  Sum_probs=123.9

Q ss_pred             CccCcEEEEEecCCCcEEEE-----eeCCCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCC---------
Q 024372           59 GHKGAVWSCCLDANALFSAS-----GSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEK---------  124 (268)
Q Consensus        59 ~h~~~V~~~~~~~~~~~l~s-----~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~---------  124 (268)
                      +|...+..++|+||++++|-     |+.+.+|++||+.+++.+...........++|+ |++.|+.++.+.         
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~  204 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSAR  204 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCccccccccc
Confidence            45667888999999998873     334468999999998865432111112467899 999998888774         


Q ss_pred             ----eEEEEECCCCCCCCeEecC----CcccEEEEEEeCCCCcEEEEeeCC---CeEEEEeCCCCc-eEEeec-CCCCEE
Q 024372          125 ----ILRIFDLNRPDAPPREVGN----SSGSIRTVAWLHSDQTILSSCTDS---GGVRLWDARSGK-IVQTLE-TKSPVT  191 (268)
Q Consensus       125 ----~i~~~d~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~d---~~i~iwd~~~~~-~~~~~~-~~~~v~  191 (268)
                          .|++|++.++.........    +......+.++|++..++++...+   +.|+++|+.+++ ....+. ......
T Consensus       205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~  284 (693)
T 3iuj_A          205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADV  284 (693)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCE
T ss_pred             CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceE
Confidence                3899998765432222222    222467788999998876665432   589999998763 333343 223333


Q ss_pred             EEEECCCCcE-EEEeC----CCeEEEEeCCCcee--eeEEeCCCCceeeEEcCCCCCEEEecc-CCC--eEEEEECCCCc
Q 024372          192 SAEVSRDGRY-ITTAD----GSSVKFWDANHFGL--VKGYNMPCNTESASLEPKLGNIFIAGG-EDM--WVHVFDFHTGE  261 (268)
Q Consensus       192 ~~~~s~~g~~-l~~~~----~~~v~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~gs-~d~--~i~~wd~~~g~  261 (268)
                      .. ++++|.. ++.++    ...|..+|+.+...  .+.+........ .+++ +++.|+... .|+  .|++||...++
T Consensus       285 ~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~-~~s~-~g~~lv~~~~~~g~~~l~~~d~~g~~  361 (693)
T 3iuj_A          285 SL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL-TVHS-GSGYLFAEYMVDATARVEQFDYEGKR  361 (693)
T ss_dssp             EE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE-EEEE-ETTEEEEEEEETTEEEEEEECTTSCE
T ss_pred             EE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE-EEEE-ECCEEEEEEEECCeeEEEEEECCCCe
Confidence            33 6666554 44443    25799999977543  233322222222 6666 466666554 454  68999987544

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.22  E-value=3.8e-12  Score=108.24  Aligned_cols=188  Identities=13%  Similarity=0.034  Sum_probs=99.3

Q ss_pred             CCcEEEEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEE
Q 024372           72 NALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTV  151 (268)
Q Consensus        72 ~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~  151 (268)
                      ++..+++++.|+.|+.||..+++.+..+.. ..+.+..+..++.++++++.|+.++.||..+++............+.+.
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~s   86 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQAS   86 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccC
Confidence            466788899999999999999999887765 4454444556777888888999999999876654322111100011000


Q ss_pred             EEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEE-EEeCCCeEEEEeCCCceeeeEEeCCCCc
Q 024372          152 AWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYI-TTADGSSVKFWDANHFGLVKGYNMPCNT  230 (268)
Q Consensus       152 ~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l-~~~~~~~v~~wd~~~~~~~~~~~~~~~~  230 (268)
                      -....++. +.+++.++.|+.||.++|+.+..+.....   ..++|++..+ +++.++.|+.||.++++.+..+.... .
T Consensus        87 p~~~~~~~-v~~g~~dg~v~a~D~~tG~~~w~~~~~~~---~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~-~  161 (369)
T 2hz6_A           87 PCRSSDGI-LYMGKKQDIWYVIDLLTGEKQQTLSSAFA---DSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD-Y  161 (369)
T ss_dssp             SCC------CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE-E
T ss_pred             ceEecCCE-EEEEeCCCEEEEEECCCCcEEEEecCCCc---ccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc-c
Confidence            00012333 34455668999999999999887765432   3445666555 45567899999998887665554321 1


Q ss_pred             eeeEEcCC--CCCEEEeccCCCeEEEEECCCCcEEee
Q 024372          231 ESASLEPK--LGNIFIAGGEDMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       231 ~~~~~~~~--~~~~~~~gs~d~~i~~wd~~~g~~~~~  265 (268)
                      ....+..+  .+..+++++.|+.|+.||.++|+++-.
T Consensus       162 ~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~  198 (369)
T 2hz6_A          162 AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWI  198 (369)
T ss_dssp             CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEE
T ss_pred             cCccccCCccccceEEEECCCCEEEEEECCCCcEEEE
Confidence            11112211  114567788899999999999987643

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.21  E-value=2.3e-08  Score=82.00  Aligned_cols=198  Identities=10%  Similarity=0.049  Sum_probs=124.7

Q ss_pred             cEEEEEecCC-CcEEEEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEe
Q 024372           63 AVWSCCLDAN-ALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV  141 (268)
Q Consensus        63 ~V~~~~~~~~-~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~  141 (268)
                      --....|+++ +.++++...++.|..||..++.. ..+.....+.++.++++++++++ . ++.|.+||..+++......
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~   90 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLAT   90 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEE
T ss_pred             cccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEeCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEe
Confidence            3445667875 45667777889999999987665 44556678999999999996654 3 5678999986543211111


Q ss_pred             c---CCcccEEEEEEeCCCCcEEEEeeC----------CCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEE-Ee-C
Q 024372          142 G---NSSGSIRTVAWLHSDQTILSSCTD----------SGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYIT-TA-D  206 (268)
Q Consensus       142 ~---~~~~~v~~~~~~~~~~~~~~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~~-~  206 (268)
                      .   .....++.+++.+++..++.+...          .+.|..+|.. ++...........+.++|+|+++.+. +. .
T Consensus        91 ~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~pngi~~spdg~~lyv~~~~  169 (297)
T 3g4e_A           91 VDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQVDISNGLDWSLDHKIFYYIDSL  169 (297)
T ss_dssp             CCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEEESBEEEEEECTTSCEEEEEEGG
T ss_pred             cCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEeeccccccceEEcCCCCEEEEecCC
Confidence            1   112346778888877644433221          1234444443 44333333334578999999998654 33 4


Q ss_pred             CCeEEEEeCC--Cceee--eEE-eCC---CCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEee
Q 024372          207 GSSVKFWDAN--HFGLV--KGY-NMP---CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       207 ~~~v~~wd~~--~~~~~--~~~-~~~---~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~  265 (268)
                      ++.|..||+.  ++...  +.+ ...   ..+..+++.+ +|.+.++...++.|.+||.++|+.+..
T Consensus       170 ~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~-~G~lwva~~~~~~v~~~d~~tG~~~~~  235 (297)
T 3g4e_A          170 SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDA-EGKLWVACYNGGRVIRLDPVTGKRLQT  235 (297)
T ss_dssp             GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBT-TSCEEEEEETTTEEEEECTTTCCEEEE
T ss_pred             CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECC-CCCEEEEEcCCCEEEEEcCCCceEEEE
Confidence            6789999873  33321  112 111   2244556666 588888877788899999988987655

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.17  E-value=2.9e-08  Score=85.17  Aligned_cols=216  Identities=12%  Similarity=0.113  Sum_probs=140.6

Q ss_pred             CCCcEEEE-EeCCCCeEEeeCCCC----CeEEEee------C-ccCcEEEEEecCCCcEEEEeeCC------CcEEEEeC
Q 024372           29 PDGFFLVS-ASKDSSPMLRNGETG----DWIGTFE------G-HKGAVWSCCLDANALFSASGSAD------FTAKLWDA   90 (268)
Q Consensus        29 ~dg~~l~s-~s~d~~i~iw~~~~~----~~~~~~~------~-h~~~V~~~~~~~~~~~l~s~s~D------~~v~iw~~   90 (268)
                      .++++|+. +..+..|.|.|+.+.    +.+++++      . -...-..+...|++ +++++..+      +.+.+.|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            45666654 666778999998765    5667663      0 11133556778999 66665555      78999999


Q ss_pred             CCCCeeeeeccC-C---eEEEEEECCCCCEEEEee-------------------CCCeEEEEECCCCCCCCeEecC--Cc
Q 024372           91 LTGDEKHSFEHK-H---IVRACAFSEDTHLLLTGG-------------------FEKILRIFDLNRPDAPPREVGN--SS  145 (268)
Q Consensus        91 ~~~~~~~~~~~~-~---~v~~v~~~~~~~~l~s~~-------------------~d~~i~~~d~~~~~~~~~~~~~--~~  145 (268)
                      .+.+.+..++.. .   .-..+.|+|+++.+++..                   ....|.+||+.+.+. .+.+.-  ..
T Consensus       172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~-~~tI~vg~~g  250 (462)
T 2ece_A          172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKR-IHSLTLGEEN  250 (462)
T ss_dssp             TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEE-EEEEESCTTE
T ss_pred             CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcE-eeEEecCCCC
Confidence            999998888633 1   233578899999999885                   378999999976432 233322  11


Q ss_pred             ccEEEEEE--eCCCCcEEEEee-----CCCeEEEEeCCCCc--eEEee--cC-----------------CCCEEEEEECC
Q 024372          146 GSIRTVAW--LHSDQTILSSCT-----DSGGVRLWDARSGK--IVQTL--ET-----------------KSPVTSAEVSR  197 (268)
Q Consensus       146 ~~v~~~~~--~~~~~~~~~~~~-----~d~~i~iwd~~~~~--~~~~~--~~-----------------~~~v~~~~~s~  197 (268)
                      .....+.|  +|++...++++-     .+++|.+|....++  ..+.+  ..                 ......+.+||
T Consensus       251 ~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~  330 (462)
T 2ece_A          251 RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISL  330 (462)
T ss_dssp             EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECT
T ss_pred             CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECC
Confidence            23345555  788888777776     67888876654442  11211  10                 13367899999


Q ss_pred             CCcEEEEe--CCCeEEEEeCCC---ceeeeEEeCC---------------CCceeeEEcCCCCCEEEecc
Q 024372          198 DGRYITTA--DGSSVKFWDANH---FGLVKGYNMP---------------CNTESASLEPKLGNIFIAGG  247 (268)
Q Consensus       198 ~g~~l~~~--~~~~v~~wd~~~---~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~gs  247 (268)
                      ||++|-.+  ..+.|.++|+..   .+.+......               ..+..+.+++ +|++++++.
T Consensus       331 DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSp-DGk~LyVaN  399 (462)
T 2ece_A          331 DDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISR-DGRRVYVTN  399 (462)
T ss_dssp             TSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECT-TSSEEEEEC
T ss_pred             CCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcC-CCCEEEEEc
Confidence            99998665  357999999852   3445444432               1356677777 577776665

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.16  E-value=1.3e-08  Score=85.29  Aligned_cols=227  Identities=12%  Similarity=0.059  Sum_probs=141.1

Q ss_pred             CCeeeEEEecCCCCCcEEEEEeC--CCCeEEeeCCCCCeEEEe-------eCccCcEEEEEecCCCcEEEEeeC-----C
Q 024372           17 RPVVDLFYSPITPDGFFLVSASK--DSSPMLRNGETGDWIGTF-------EGHKGAVWSCCLDANALFSASGSA-----D   82 (268)
Q Consensus        17 ~~v~~~~f~~~~~dg~~l~s~s~--d~~i~iw~~~~~~~~~~~-------~~h~~~V~~~~~~~~~~~l~s~s~-----D   82 (268)
                      .....++++|   +|+++++...  ++.++||.+.++++. .+       .+|...+..+++++++.+++.-..     +
T Consensus        17 ~~p~~va~~~---~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~   92 (343)
T 2qe8_A           17 LAPGNITLTP---DGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSV   92 (343)
T ss_dssp             SCEEEEEECT---TSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSC
T ss_pred             CCcceEEECC---CCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCC
Confidence            5778999984   8988888642  343566655456543 22       235578999999999877665433     6


Q ss_pred             CcEEEEeCCCCCeeeeecc-------CCeEEEEEECCCC-CEEEEee---CCCeEEEEECCCCCCCCeEecCC-------
Q 024372           83 FTAKLWDALTGDEKHSFEH-------KHIVRACAFSEDT-HLLLTGG---FEKILRIFDLNRPDAPPREVGNS-------  144 (268)
Q Consensus        83 ~~v~iw~~~~~~~~~~~~~-------~~~v~~v~~~~~~-~~l~s~~---~d~~i~~~d~~~~~~~~~~~~~~-------  144 (268)
                      +.|.+||+.+++....+..       ...+..+.+++++ ...++-.   .++.|.+||+.+++. .+....|       
T Consensus        93 ~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~-~r~~~~~~~~~~~~  171 (343)
T 2qe8_A           93 PKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA-ARVLQGYPGIAPED  171 (343)
T ss_dssp             CEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE-EEECTTCTTTSCCS
T ss_pred             CeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE-EEEecCCCcccccc
Confidence            7899999998886665542       1346788999854 4445544   678999999864421 1111110       


Q ss_pred             ----------------------cccEEEEEEeCCCCcEEEEeeCCCeEEEEeCC---CCc--------eEEeecCCCCEE
Q 024372          145 ----------------------SGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR---SGK--------IVQTLETKSPVT  191 (268)
Q Consensus       145 ----------------------~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~---~~~--------~~~~~~~~~~v~  191 (268)
                                            ......++++|++..++.+....+.|..++..   .+.        .+..+.......
T Consensus       172 ~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pd  251 (343)
T 2qe8_A          172 IDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICD  251 (343)
T ss_dssp             CCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCS
T ss_pred             cceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCc
Confidence                                  01357789999887776665554455555532   111        011111223456


Q ss_pred             EEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeCC--CCceeeEEcCCCCCEEEeccCC
Q 024372          192 SAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMP--CNTESASLEPKLGNIFIAGGED  249 (268)
Q Consensus       192 ~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~gs~d  249 (268)
                      .++++++|+++++. .++.|.+||..+++.......+  ..+..+++.+ +++++++.+..
T Consensus       252 gia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~-~g~l~v~~~~~  311 (343)
T 2qe8_A          252 GISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGS-DGYLYFDCNQL  311 (343)
T ss_dssp             CEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECT-TSCEEEEECCG
T ss_pred             eEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECC-CCcEEEEeCcc
Confidence            78999999887765 5689999998444432222222  2345666666 58888876643

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.16  E-value=1.6e-08  Score=85.61  Aligned_cols=225  Identities=13%  Similarity=0.065  Sum_probs=140.3

Q ss_pred             CcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEE-
Q 024372           31 GFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACA-  109 (268)
Q Consensus        31 g~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~-  109 (268)
                      +..+..++.++.+..+|..+|+.+-.+............. + ..++.++.++.+..+|..+++.+.......++.... 
T Consensus       103 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~-~-~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~  180 (376)
T 3q7m_A          103 GGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS-D-GLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRG  180 (376)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE-T-TEEEEECTTSEEEEEETTTCCEEEEEECCC-----CC
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE-C-CEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecC
Confidence            4477789999999999999998775554332211111222 3 356667789999999999999877765433321000 


Q ss_pred             -ECC--CCCEEEEeeCCCeEEEEECCCCCCCCeEecCC-ccc--------E-EEEEEeCCCCcEEEEeeCCCeEEEEeCC
Q 024372          110 -FSE--DTHLLLTGGFEKILRIFDLNRPDAPPREVGNS-SGS--------I-RTVAWLHSDQTILSSCTDSGGVRLWDAR  176 (268)
Q Consensus       110 -~~~--~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~-~~~--------v-~~~~~~~~~~~~~~~~~~d~~i~iwd~~  176 (268)
                       ..|  .+..++.+..++.+..+|..+++...+..... .+.        + .....  .++.+++ ++.++.+..+|.+
T Consensus       181 ~~~~~~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~-~~~~g~l~~~d~~  257 (376)
T 3q7m_A          181 ESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFA-LAYNGNLTALDLR  257 (376)
T ss_dssp             CCCCEEETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE--ETTEEEE-ECTTSCEEEEETT
T ss_pred             CCCcEEECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEE-EecCcEEEEEECC
Confidence             011  13467778889999999987665432222110 000        0 00011  1334444 4556899999999


Q ss_pred             CCceEEeecCCCCEEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEeC-CCCc-eeeEEcCCCCCEEEeccCCCeEEE
Q 024372          177 SGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNM-PCNT-ESASLEPKLGNIFIAGGEDMWVHV  254 (268)
Q Consensus       177 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~gs~d~~i~~  254 (268)
                      +++.+...... ....+... ++++++++.++.|..+|..+++.+..+.. .... .....   .+..++.++.++.+++
T Consensus       258 tG~~~w~~~~~-~~~~~~~~-~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~---~~~~l~v~~~~g~l~~  332 (376)
T 3q7m_A          258 SGQIMWKRELG-SVNDFIVD-GNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL---YNGNLVVGDSEGYLHW  332 (376)
T ss_dssp             TCCEEEEECCC-CEEEEEEE-TTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE---ETTEEEEECTTSEEEE
T ss_pred             CCcEEeeccCC-CCCCceEE-CCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE---ECCEEEEEeCCCeEEE
Confidence            99988776543 23444443 55666677788999999998887665552 2111 12222   2567888888999999


Q ss_pred             EECCCCcEEee
Q 024372          255 FDFHTGEQIAI  265 (268)
Q Consensus       255 wd~~~g~~~~~  265 (268)
                      +|.++|+.+..
T Consensus       333 ~d~~tG~~~~~  343 (376)
T 3q7m_A          333 INVEDGRFVAQ  343 (376)
T ss_dssp             EETTTCCEEEE
T ss_pred             EECCCCcEEEE
Confidence            99999998754

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.15  E-value=1.3e-08  Score=86.20  Aligned_cols=222  Identities=9%  Similarity=-0.014  Sum_probs=138.4

Q ss_pred             CcEEEEEeCCCCeEEeeCCCCCeEEEeeCc---------cCcEE-EEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeec
Q 024372           31 GFFLVSASKDSSPMLRNGETGDWIGTFEGH---------KGAVW-SCCLDANALFSASGSADFTAKLWDALTGDEKHSFE  100 (268)
Q Consensus        31 g~~l~s~s~d~~i~iw~~~~~~~~~~~~~h---------~~~V~-~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~  100 (268)
                      +..+..++.++.+..+|..+|+.+-++...         ...+. ....  ++..+..++.++.|..+|..+++.+....
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~  130 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV--SGGHVYIGSEKAQVYALNTSDGTVAWQTK  130 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE--eCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence            457888899999999999999876444432         12222 2222  34456667789999999999999876665


Q ss_pred             cCCeEEE-EEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccE------EEEEEeCCCCcEEEEeeCCCeEEEE
Q 024372          101 HKHIVRA-CAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSI------RTVAWLHSDQTILSSCTDSGGVRLW  173 (268)
Q Consensus       101 ~~~~v~~-v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v------~~~~~~~~~~~~~~~~~~d~~i~iw  173 (268)
                      ....+.. ...  .+..++.++.++.+..+|..+++...+....  ..+      ......  ++. +..++.++.|..+
T Consensus       131 ~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~--~~~~~~~~~~~~~~~--~~~-v~~g~~~g~l~~~  203 (376)
T 3q7m_A          131 VAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLD--MPSLSLRGESAPTTA--FGA-AVVGGDNGRVSAV  203 (376)
T ss_dssp             CSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECC--C-----CCCCCCEEE--TTE-EEECCTTTEEEEE
T ss_pred             CCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCC--CCceeecCCCCcEEE--CCE-EEEEcCCCEEEEE
Confidence            4332211 111  1346777888999999998776543332211  111      111111  233 4445667899999


Q ss_pred             eCCCCceEEeecCCCCE-----E---EEEEC---CCCcEEEEeCCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCE
Q 024372          174 DARSGKIVQTLETKSPV-----T---SAEVS---RDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNI  242 (268)
Q Consensus       174 d~~~~~~~~~~~~~~~v-----~---~~~~s---~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (268)
                      |.++++.+.......+.     .   .+...   .++.+++++.++.+..+|.++++.+..+.... ......   .+..
T Consensus       204 d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~-~~~~~~---~~~~  279 (376)
T 3q7m_A          204 LMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGS-VNDFIV---DGNR  279 (376)
T ss_dssp             ETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCCC-EEEEEE---ETTE
T ss_pred             ECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCCC-CCCceE---ECCE
Confidence            99999988766532110     0   01111   24556666678899999999888776555432 122222   3566


Q ss_pred             EEeccCCCeEEEEECCCCcEEee
Q 024372          243 FIAGGEDMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       243 ~~~gs~d~~i~~wd~~~g~~~~~  265 (268)
                      ++.++.++.|+.+|.++|+.+-.
T Consensus       280 l~~~~~~g~l~~~d~~tG~~~w~  302 (376)
T 3q7m_A          280 IYLVDQNDRVMALTIDGGVTLWT  302 (376)
T ss_dssp             EEEEETTCCEEEEETTTCCEEEE
T ss_pred             EEEEcCCCeEEEEECCCCcEEEe
Confidence            77777888999999999987643

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.15  E-value=1.2e-08  Score=90.35  Aligned_cols=240  Identities=10%  Similarity=0.057  Sum_probs=160.9

Q ss_pred             eEEEecCCCCCcEEEEEeCCC-CeEEeeCCCCCeEEEeeCc-cCcEEEEEe-c-CCCcEEEEee----------------
Q 024372           21 DLFYSPITPDGFFLVSASKDS-SPMLRNGETGDWIGTFEGH-KGAVWSCCL-D-ANALFSASGS----------------   80 (268)
Q Consensus        21 ~~~f~~~~~dg~~l~s~s~d~-~i~iw~~~~~~~~~~~~~h-~~~V~~~~~-~-~~~~~l~s~s----------------   80 (268)
                      .+++-.-.+||++|.....+. .|.+-|..+.++.+.+.-- ......+++ + |++.++..++                
T Consensus        91 ~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~  170 (595)
T 1fwx_A           91 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  170 (595)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             ccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccc
Confidence            555544446888888877655 4788899999988744321 234667777 5 8888876663                


Q ss_pred             --CCCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCC----------------------------------
Q 024372           81 --ADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEK----------------------------------  124 (268)
Q Consensus        81 --~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~----------------------------------  124 (268)
                        .++.+-+.|..+.+....+.....-..+.++|+++++++.+.+.                                  
T Consensus       171 ~~~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~  250 (595)
T 1fwx_A          171 ANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDY  250 (595)
T ss_dssp             GGEEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCS
T ss_pred             cccCceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCe
Confidence              34578899999988888776533445677899999999888654                                  


Q ss_pred             ----eEEEEECCC--CCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCc------------eEEeecC
Q 024372          125 ----ILRIFDLNR--PDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK------------IVQTLET  186 (268)
Q Consensus       125 ----~i~~~d~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~------------~~~~~~~  186 (268)
                          .+.+.|..+  +......+.-. ....++.++|++.++++++..+++|.++|+++.+            .+.+.+.
T Consensus       251 ~~i~~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v  329 (595)
T 1fwx_A          251 QELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL  329 (595)
T ss_dssp             EEETTEEEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC
T ss_pred             eEECcEEEEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC
Confidence                255566554  22111222111 1234678899999999998888999999999763            4455665


Q ss_pred             CCCEEEEEECCCCcEEEEe-CCCeEEEEeCCC----------ceeeeEEeCCCCc--e----eeEEcCCCCCEEEec---
Q 024372          187 KSPVTSAEVSRDGRYITTA-DGSSVKFWDANH----------FGLVKGYNMPCNT--E----SASLEPKLGNIFIAG---  246 (268)
Q Consensus       187 ~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~----------~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~g---  246 (268)
                      ......++|+|+|...++. -+..|..||+..          ...+.+...+..+  .    .....+ +|++|+++   
T Consensus       330 G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~-DGk~l~~~Nk~  408 (595)
T 1fwx_A          330 GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDA-TNDWLVCLSKF  408 (595)
T ss_dssp             CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTC-CSSEEEEEESC
T ss_pred             CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCC-CCCEEEEcCCC
Confidence            5668899999999433343 478999999876          4456666554322  1    112344 79988875   


Q ss_pred             cCCCeE----------EEEECCCCcE
Q 024372          247 GEDMWV----------HVFDFHTGEQ  262 (268)
Q Consensus       247 s~d~~i----------~~wd~~~g~~  262 (268)
                      +.|+.+          .++|+..+++
T Consensus       409 skdr~~~~gp~~~~~~ql~dis~~~m  434 (595)
T 1fwx_A          409 SKDRFLNVGPLKPENDQLIDISGDKM  434 (595)
T ss_dssp             CTTSSCCCCSSCCEEEEEEECSSSSC
T ss_pred             CccccccCCCCCCCcceEEEcCCCcE
Confidence            447652          8899965553

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.13  E-value=1.7e-08  Score=84.58  Aligned_cols=199  Identities=11%  Similarity=0.020  Sum_probs=126.6

Q ss_pred             CcEEEEEecCCCcEEEEee--CCCcEEEEeCCCCCeeeeec--------cCCeEEEEEECCCCCEEEEeeC-----CCeE
Q 024372           62 GAVWSCCLDANALFSASGS--ADFTAKLWDALTGDEKHSFE--------HKHIVRACAFSEDTHLLLTGGF-----EKIL  126 (268)
Q Consensus        62 ~~V~~~~~~~~~~~l~s~s--~D~~v~iw~~~~~~~~~~~~--------~~~~v~~v~~~~~~~~l~s~~~-----d~~i  126 (268)
                      .....++++++++++++..  .++.++||.+.++. ...+.        +-..+..+.+++++++.++-..     +..|
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            6788999999999888864  23436666654443 23221        2246889999999886665433     5789


Q ss_pred             EEEECCCCCCCCeEecC------CcccEEEEEEeCCCCcEEEEee---CCCeEEEEeCCCCceEEeecCC----------
Q 024372          127 RIFDLNRPDAPPREVGN------SSGSIRTVAWLHSDQTILSSCT---DSGGVRLWDARSGKIVQTLETK----------  187 (268)
Q Consensus       127 ~~~d~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~----------  187 (268)
                      ..||+.+++.. .....      +......+++.++++.++++..   .++.|.+||+.+++..+.+..+          
T Consensus        96 ~~~d~~tg~~~-~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~  174 (343)
T 2qe8_A           96 VAWDTLNNQLS-RVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDL  174 (343)
T ss_dssp             EEEETTTTEEE-EEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCC
T ss_pred             EEEECCCCeEE-EEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccce
Confidence            99998765422 22211      1224567888876666666655   5689999999988776655321          


Q ss_pred             --------------------CCEEEEEECCCCcEEEEe--CCCeEEEEeCC---Cce--------eeeEEeCCCCceeeE
Q 024372          188 --------------------SPVTSAEVSRDGRYITTA--DGSSVKFWDAN---HFG--------LVKGYNMPCNTESAS  234 (268)
Q Consensus       188 --------------------~~v~~~~~s~~g~~l~~~--~~~~v~~wd~~---~~~--------~~~~~~~~~~~~~~~  234 (268)
                                          ..++.++++|+|+.|..+  .+..+..++..   ...        .+........+..++
T Consensus       175 ~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia  254 (343)
T 2qe8_A          175 VIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGIS  254 (343)
T ss_dssp             EETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEE
T ss_pred             eECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEE
Confidence                                136889999999866543  33455555431   110        011111112344566


Q ss_pred             EcCCCCCEEEeccCCCeEEEEECCCCcEE
Q 024372          235 LEPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (268)
Q Consensus       235 ~~~~~~~~~~~gs~d~~i~~wd~~~g~~~  263 (268)
                      +.+ +|.++++...++.|.+||.++|+..
T Consensus       255 ~d~-~G~l~va~~~~~~V~~~d~~~G~~~  282 (343)
T 2qe8_A          255 IDK-DHNIYVGDLAHSAIGVITSADRAYK  282 (343)
T ss_dssp             ECT-TCCEEEEEGGGTEEEEEETTTTEEE
T ss_pred             ECC-CCCEEEEccCCCeEEEEECCCCCEE
Confidence            666 5899999999999999998667643

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.11  E-value=1e-06  Score=70.87  Aligned_cols=201  Identities=5%  Similarity=-0.059  Sum_probs=126.1

Q ss_pred             CcEEEEEecCCCc-EEEEeeCCCcEEEEeCCCCCeeeeeccC-CeEEEEEECCCCCEE-EEeeCCCeEEEEECCCCCCCC
Q 024372           62 GAVWSCCLDANAL-FSASGSADFTAKLWDALTGDEKHSFEHK-HIVRACAFSEDTHLL-LTGGFEKILRIFDLNRPDAPP  138 (268)
Q Consensus        62 ~~V~~~~~~~~~~-~l~s~s~D~~v~iw~~~~~~~~~~~~~~-~~v~~v~~~~~~~~l-~s~~~d~~i~~~d~~~~~~~~  138 (268)
                      .....+++++++. +.++-..++.|..++.........+... .....+++++++..+ ++-...+.|.++++.... ..
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~-~~  114 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-RR  114 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC-EE
Confidence            3567889998654 4556667789999998766544333222 456789999865544 454567889999986322 11


Q ss_pred             eEecCCcccEEEEEEeCCCCcEEEEeeC--CCeEEEEeCCCCceEEee--cCCCCEEEEEECCCCcEE-EEe-CCCeEEE
Q 024372          139 REVGNSSGSIRTVAWLHSDQTILSSCTD--SGGVRLWDARSGKIVQTL--ETKSPVTSAEVSRDGRYI-TTA-DGSSVKF  212 (268)
Q Consensus       139 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~--d~~i~iwd~~~~~~~~~~--~~~~~v~~~~~s~~g~~l-~~~-~~~~v~~  212 (268)
                      ............+++.++++.++.+...  .+.|..+++.... ...+  ........++++|++..| ++. ..+.|..
T Consensus       115 ~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~  193 (267)
T 1npe_A          115 VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAEC  193 (267)
T ss_dssp             EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             EEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEE
Confidence            1221111345788888877777666543  3688888876432 2222  122357899999987554 343 4578999


Q ss_pred             EeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEeec
Q 024372          213 WDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       213 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~~  266 (268)
                      +|...............+..++..  .+.++++...++.|+++|..+|+.+...
T Consensus       194 ~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i  245 (267)
T 1npe_A          194 LNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTF  245 (267)
T ss_dssp             EETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EecCCCceEEEecCCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEE
Confidence            998754333323322233344432  4666776667788999999989877653

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.10  E-value=8.1e-08  Score=79.93  Aligned_cols=193  Identities=13%  Similarity=0.009  Sum_probs=119.7

Q ss_pred             EEEEecCCC-cEEEEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEec-
Q 024372           65 WSCCLDANA-LFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG-  142 (268)
Q Consensus        65 ~~~~~~~~~-~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~-  142 (268)
                      ....|++++ .++++...++.|..||..++... .+.....+.++.++++++++++. . ..+.+||..+++.. .... 
T Consensus        52 egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~-~~~~~  127 (326)
T 2ghs_A           52 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHALPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLT-LHAEL  127 (326)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEE-EEECS
T ss_pred             cCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEECCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEE-EEeeC
Confidence            446688874 55667777899999999876543 34456678999999999877754 3 45889998654421 1111 


Q ss_pred             ---CCcccEEEEEEeCCCCcEEEEeeC-----CCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEE-Ee-CCCeEEE
Q 024372          143 ---NSSGSIRTVAWLHSDQTILSSCTD-----SGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYIT-TA-DGSSVKF  212 (268)
Q Consensus       143 ---~~~~~v~~~~~~~~~~~~~~~~~~-----d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~~-~~~~v~~  212 (268)
                         .....+..+.+.+++..++.+...     .+.|..+|  +++...........+.++|+|+|+.+. +. .++.|.+
T Consensus       128 ~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~  205 (326)
T 2ghs_A          128 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMR  205 (326)
T ss_dssp             STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEE
T ss_pred             CCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEE
Confidence               112357788888877644433221     24566666  455433333334578999999998653 33 3578999


Q ss_pred             EeCC--Cc-ee--eeEE-eCC---CCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEee
Q 024372          213 WDAN--HF-GL--VKGY-NMP---CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       213 wd~~--~~-~~--~~~~-~~~---~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~  265 (268)
                      ||+.  ++ ..  .+.+ ...   ..+..+.+.+ +|.++++...++.|++||. +|+.+..
T Consensus       206 ~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~-~G~lwva~~~~~~v~~~d~-~g~~~~~  265 (326)
T 2ghs_A          206 VPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA-EGHIWNARWGEGAVDRYDT-DGNHIAR  265 (326)
T ss_dssp             EEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT-TSCEEEEEETTTEEEEECT-TCCEEEE
T ss_pred             EEcccccCCcccCceEEEECCCCCCCCCeeEECC-CCCEEEEEeCCCEEEEECC-CCCEEEE
Confidence            9985  33 21  1122 111   1233445555 5787777666778999998 5766543

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.09  E-value=3e-08  Score=81.60  Aligned_cols=193  Identities=10%  Similarity=0.053  Sum_probs=122.1

Q ss_pred             eeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCc-----cCcEEEEEecCCCcEEEE----eeC-
Q 024372           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH-----KGAVWSCCLDANALFSAS----GSA-   81 (268)
Q Consensus        12 ~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h-----~~~V~~~~~~~~~~~l~s----~s~-   81 (268)
                      +..+...+.+++++|   +|+++++...++.|..|+.. ++.. .+..+     ...+..+++.+++.+.+|    |.. 
T Consensus        81 ~~~~~~~~~gl~~d~---dG~l~v~~~~~~~v~~~~~~-g~~~-~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~  155 (305)
T 3dr2_A           81 LLDATAFTNGNAVDA---QQRLVHCEHGRRAITRSDAD-GQAH-LLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRK  155 (305)
T ss_dssp             EEESCSCEEEEEECT---TSCEEEEETTTTEEEEECTT-SCEE-EEECEETTEECSCCCCEEECTTSCEEEECCSGGGSC
T ss_pred             EeCCCCccceeeECC---CCCEEEEECCCCEEEEECCC-CCEE-EEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccc
Confidence            344566788999984   88877766666788889875 6543 23221     134567899999998886    332 


Q ss_pred             ------------CCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCC------CeEEEEECCCCCCCC-eEe-
Q 024372           82 ------------DFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFE------KILRIFDLNRPDAPP-REV-  141 (268)
Q Consensus        82 ------------D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d------~~i~~~d~~~~~~~~-~~~-  141 (268)
                                  .+.|..+|..++...... .......++|+|+++.|+.+...      +.|..|++....... ..+ 
T Consensus       156 ~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~  234 (305)
T 3dr2_A          156 PSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFA  234 (305)
T ss_dssp             GGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEE
T ss_pred             cccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEE
Confidence                        245777777666654433 33456789999999988777655      689999976432100 011 


Q ss_pred             cCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEeCCCeEEEEe
Q 024372          142 GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWD  214 (268)
Q Consensus       142 ~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~~wd  214 (268)
                      ....+....+++.+++. +.++. . +.|.+||. .++.+..+.....+.+++|+|+++.|..+..+.+..++
T Consensus       235 ~~~~~~pdgi~~d~~G~-lwv~~-~-~gv~~~~~-~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~~~l~~~~  303 (305)
T 3dr2_A          235 SVPDGLPDGFCVDRGGW-LWSSS-G-TGVCVFDS-DGQLLGHIPTPGTASNCTFDQAQQRLFITGGPCLWMLP  303 (305)
T ss_dssp             CCSSSCCCSEEECTTSC-EEECC-S-SEEEEECT-TSCEEEEEECSSCCCEEEECTTSCEEEEEETTEEEEEE
T ss_pred             ECCCCCCCeEEECCCCC-EEEec-C-CcEEEECC-CCCEEEEEECCCceeEEEEeCCCCEEEEEcCCeEEEEE
Confidence            11122334566666654 54443 4 46999998 47777776654568889999998766544334444333

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.07  E-value=1.4e-07  Score=75.89  Aligned_cols=202  Identities=11%  Similarity=0.059  Sum_probs=136.8

Q ss_pred             CCeEEEeeCcc--CcEEEEEecCCCcEEEEeeC--CCcEEEEeCCCCCeeeeeccCC--eEEEEEECCCCCEEE-EeeCC
Q 024372           51 GDWIGTFEGHK--GAVWSCCLDANALFSASGSA--DFTAKLWDALTGDEKHSFEHKH--IVRACAFSEDTHLLL-TGGFE  123 (268)
Q Consensus        51 ~~~~~~~~~h~--~~V~~~~~~~~~~~l~s~s~--D~~v~iw~~~~~~~~~~~~~~~--~v~~v~~~~~~~~l~-s~~~d  123 (268)
                      .+.+.++. |.  .....++|++++.+.++.+.  ++.|++.|+.+++....+....  ....+.+.  +..|+ +.-.+
T Consensus         9 ~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~   85 (266)
T 2iwa_A            9 VEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLK   85 (266)
T ss_dssp             EEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTC
T ss_pred             ceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecC
Confidence            34556664 43  23678999998766566553  6899999999999888875333  22234443  44444 44567


Q ss_pred             CeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCC------CCEEEEEECC
Q 024372          124 KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK------SPVTSAEVSR  197 (268)
Q Consensus       124 ~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~------~~v~~~~~s~  197 (268)
                      +.+.++|..+.+.. ..+......-..+  .++++.++++. .++.|.++|.++.+.+..+...      ..++.+.+. 
T Consensus        86 ~~v~viD~~t~~v~-~~i~~g~~~g~gl--t~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-  160 (266)
T 2iwa_A           86 NIGFIYDRRTLSNI-KNFTHQMKDGWGL--ATDGKILYGSD-GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-  160 (266)
T ss_dssp             SEEEEEETTTTEEE-EEEECCSSSCCEE--EECSSSEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred             CEEEEEECCCCcEE-EEEECCCCCeEEE--EECCCEEEEEC-CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-
Confidence            89999998765432 2332111111223  45677777765 4689999999999988877532      136778888 


Q ss_pred             CCcEEEEe-CCCeEEEEeCCCceeeeEEeCCC--------------CceeeEEcCCCCCEEEeccCCCeEEEEECCCC
Q 024372          198 DGRYITTA-DGSSVKFWDANHFGLVKGYNMPC--------------NTESASLEPKLGNIFIAGGEDMWVHVFDFHTG  260 (268)
Q Consensus       198 ~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g  260 (268)
                      +|+..+.. .++.|.+-|..+++.+..+....              ....+++.++.+++|+++.....|++.++...
T Consensus       161 dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          161 NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            77666554 46799999999999888887531              22466777766678889988888999887643

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.05  E-value=2e-06  Score=69.21  Aligned_cols=217  Identities=8%  Similarity=-0.056  Sum_probs=135.0

Q ss_pred             CCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCC-cEEEEeeCCCcEEEEeCCCCCe
Q 024372           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA-LFSASGSADFTAKLWDALTGDE   95 (268)
Q Consensus        17 ~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~-~~l~s~s~D~~v~iw~~~~~~~   95 (268)
                      ....+++|+|  .++.+.++-..++.|..++...+.....+.........+++++++ .+.++-...+.|.+++......
T Consensus        36 ~~~~gi~~d~--~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~  113 (267)
T 1npe_A           36 KVIIGLAFDC--VDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR  113 (267)
T ss_dssp             EEEEEEEEET--TTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CcEEEEEEec--CCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE
Confidence            3456888885  245555555667788889887654433333323467889999865 4455666678999999865433


Q ss_pred             eeeeccC-CeEEEEEECCCCCEEEEeeC---CCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEE
Q 024372           96 KHSFEHK-HIVRACAFSEDTHLLLTGGF---EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR  171 (268)
Q Consensus        96 ~~~~~~~-~~v~~v~~~~~~~~l~s~~~---d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~  171 (268)
                      ....... .....++++|++..|+.+..   .+.|..+++... ...............+++.++++.++++....+.|.
T Consensus       114 ~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~  192 (267)
T 1npe_A          114 RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAE  192 (267)
T ss_dssp             EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC-CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEE
Confidence            2222222 34678999996555554443   367888887532 211111122234678899888888888877778999


Q ss_pred             EEeCCCCceEEeecCCCCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeCCC--CceeeEEcC
Q 024372          172 LWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPC--NTESASLEP  237 (268)
Q Consensus       172 iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~~--~~~~~~~~~  237 (268)
                      .+|+........+........+++. ++.++++. .++.|..+|..+++.+..+....  .+..+++.|
T Consensus       193 ~~~~~g~~~~~~~~~~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~  260 (267)
T 1npe_A          193 CLNPAQPGRRKVLEGLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIAL  260 (267)
T ss_dssp             EEETTEEEEEEEEECCCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEEC
T ss_pred             EEecCCCceEEEecCCCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecC
Confidence            9999865443333333345667765 34444444 46799999998888777775432  234444444

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.02  E-value=2.1e-07  Score=74.89  Aligned_cols=197  Identities=11%  Similarity=0.026  Sum_probs=129.9

Q ss_pred             ecCC--CeeeEEEecCCCCCcEEEEEeC--CCCeEEeeCCCCCeEEEeeCcc-CcEEEEEecCCCcEEEEeeCCCcEEEE
Q 024372           14 GHSR--PVVDLFYSPITPDGFFLVSASK--DSSPMLRNGETGDWIGTFEGHK-GAVWSCCLDANALFSASGSADFTAKLW   88 (268)
Q Consensus        14 ~h~~--~v~~~~f~~~~~dg~~l~s~s~--d~~i~iw~~~~~~~~~~~~~h~-~~V~~~~~~~~~~~l~s~s~D~~v~iw   88 (268)
                      .|..  ...+++|+|   ||.+.++.+.  ++.|++.|..+++.+.++.-.. .....+++.. +.+.++.-.++.+.++
T Consensus        16 p~~~~~f~~Gl~~~~---dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~~~v~vi   91 (266)
T 2iwa_A           16 PHDPYAFTQGLVYAE---NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLKNIGFIY   91 (266)
T ss_dssp             ECCTTCCEEEEEECS---TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETTCSEEEEE
T ss_pred             ECCCCCCcccEEEeC---CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEecCCEEEEE
Confidence            4554  357999984   6655554443  5789999999999988875211 2223455553 2334555578999999


Q ss_pred             eCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecC----CcccEEEEEEeCCCCcEEEEe
Q 024372           89 DALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN----SSGSIRTVAWLHSDQTILSSC  164 (268)
Q Consensus        89 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~  164 (268)
                      |..+.+.+.++....+ ....++++++.++.+..++.+.++|..+.+........    .....+.+.|. + +.+++..
T Consensus        92 D~~t~~v~~~i~~g~~-~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-d-g~lyvn~  168 (266)
T 2iwa_A           92 DRRTLSNIKNFTHQMK-DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-N-GEVWANI  168 (266)
T ss_dssp             ETTTTEEEEEEECCSS-SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T-TEEEEEE
T ss_pred             ECCCCcEEEEEECCCC-CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-C-CEEEEec
Confidence            9999998888865411 12335567777777777899999998764422221111    11125567776 3 4667776


Q ss_pred             eCCCeEEEEeCCCCceEEeecCC--------------CCEEEEEECCCCcEE-EEe-CCCeEEEEeCCC
Q 024372          165 TDSGGVRLWDARSGKIVQTLETK--------------SPVTSAEVSRDGRYI-TTA-DGSSVKFWDANH  217 (268)
Q Consensus       165 ~~d~~i~iwd~~~~~~~~~~~~~--------------~~v~~~~~s~~g~~l-~~~-~~~~v~~wd~~~  217 (268)
                      ..++.|.+-|+++++.+.++...              ...+.++++|+++.+ +++ ....|...++..
T Consensus       169 ~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          169 WQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             TTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred             CCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence            66789999999999998887642              246899999998654 444 346777666543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.99  E-value=1.2e-07  Score=75.63  Aligned_cols=183  Identities=13%  Similarity=0.142  Sum_probs=122.8

Q ss_pred             ecCC--CeeeEEEecCCCCCcEEEEEeCCC--CeEEeeCCCCCeEEEeeCccCc-EEEEEecCCCcEEEEeeCCCcEEEE
Q 024372           14 GHSR--PVVDLFYSPITPDGFFLVSASKDS--SPMLRNGETGDWIGTFEGHKGA-VWSCCLDANALFSASGSADFTAKLW   88 (268)
Q Consensus        14 ~h~~--~v~~~~f~~~~~dg~~l~s~s~d~--~i~iw~~~~~~~~~~~~~h~~~-V~~~~~~~~~~~l~s~s~D~~v~iw   88 (268)
                      .|..  ...+|.|+    ++.+..+++.++  .|+++|..+|+.++++.-.... -..+++..+ .+....-.++.+.++
T Consensus        38 phd~~~ftqGL~~~----~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~-~ly~ltw~~~~v~v~  112 (262)
T 3nol_A           38 PHDTKAFTEGFFYR----NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKD-KIVGLTWKNGLGFVW  112 (262)
T ss_dssp             ECCTTCEEEEEEEE----TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETT-EEEEEESSSSEEEEE
T ss_pred             cCCCCcccceEEEE----CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCC-EEEEEEeeCCEEEEE
Confidence            4554  34699997    567777777776  8899999999998888643321 123444433 333444568999999


Q ss_pred             eCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEec-C---CcccEEEEEEeCCCCcEEEEe
Q 024372           89 DALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG-N---SSGSIRTVAWLHSDQTILSSC  164 (268)
Q Consensus        89 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~-~---~~~~v~~~~~~~~~~~~~~~~  164 (268)
                      |..+.+.+.++..+..-..+  .++++.|+.+..++.|.++|..+.+......- .   ....++.+.|. + +.+.+..
T Consensus       113 D~~t~~~~~ti~~~~eG~gl--t~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~-G~lyan~  188 (262)
T 3nol_A          113 NIRNLRQVRSFNYDGEGWGL--THNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-D-GEIFANV  188 (262)
T ss_dssp             ETTTCCEEEEEECSSCCCCE--EECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-T-TEEEEEE
T ss_pred             ECccCcEEEEEECCCCceEE--ecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-C-CEEEEEE
Confidence            99999999888764422233  35677777766678899999876543222111 1   11234556765 3 4677777


Q ss_pred             eCCCeEEEEeCCCCceEEeecCC-------------CCEEEEEECCCCcEEEEe
Q 024372          165 TDSGGVRLWDARSGKIVQTLETK-------------SPVTSAEVSRDGRYITTA  205 (268)
Q Consensus       165 ~~d~~i~iwd~~~~~~~~~~~~~-------------~~v~~~~~s~~g~~l~~~  205 (268)
                      ..++.|.+.|.++++.+..+...             ...+.|+++|+++.|...
T Consensus       189 w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVT  242 (262)
T 3nol_A          189 WQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVT  242 (262)
T ss_dssp             TTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEE
T ss_pred             ccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEE
Confidence            67789999999999998877542             246899999987665443

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.99  E-value=6.6e-08  Score=88.62  Aligned_cols=205  Identities=11%  Similarity=0.077  Sum_probs=130.1

Q ss_pred             CCCeEEeeCCCCCeEEEeeC--cc-----------------------------CcEEEEEecCCCcEEEEeeCCCc----
Q 024372           40 DSSPMLRNGETGDWIGTFEG--HK-----------------------------GAVWSCCLDANALFSASGSADFT----   84 (268)
Q Consensus        40 d~~i~iw~~~~~~~~~~~~~--h~-----------------------------~~V~~~~~~~~~~~l~s~s~D~~----   84 (268)
                      ++.+..+|..+|+.+=++..  +.                             ..-..++++++..+++.+..++.    
T Consensus       182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~  261 (689)
T 1yiq_A          182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDP  261 (689)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCcccc
Confidence            68899999999997755531  00                             01124678888777777776653    


Q ss_pred             ---------------EEEEeCCCCCeeeeeccC----------CeEEEEEECCCCC---EEEEeeCCCeEEEEECCCCCC
Q 024372           85 ---------------AKLWDALTGDEKHSFEHK----------HIVRACAFSEDTH---LLLTGGFEKILRIFDLNRPDA  136 (268)
Q Consensus        85 ---------------v~iw~~~~~~~~~~~~~~----------~~v~~v~~~~~~~---~l~s~~~d~~i~~~d~~~~~~  136 (268)
                                     |..+|..+++.+-.+...          .+........+++   .++.++.+|.++++|..+++.
T Consensus       262 ~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  341 (689)
T 1yiq_A          262 KWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGEL  341 (689)
T ss_dssp             HHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             CCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCE
Confidence                           999999999987766421          1121122222554   788999999999999887764


Q ss_pred             CCeEecCC---------------------------cccE-----------EEEEEeCCCCcEEEEeeC------------
Q 024372          137 PPREVGNS---------------------------SGSI-----------RTVAWLHSDQTILSSCTD------------  166 (268)
Q Consensus       137 ~~~~~~~~---------------------------~~~v-----------~~~~~~~~~~~~~~~~~~------------  166 (268)
                      ........                           ...+           ..++++|+.+.+++...+            
T Consensus       342 l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~  421 (689)
T 1yiq_A          342 LSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAP  421 (689)
T ss_dssp             EEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCC
T ss_pred             eccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccc
Confidence            31111000                           0000           115667766655543211            


Q ss_pred             --------------------------------CCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEE-EEeCCCeEEEE
Q 024372          167 --------------------------------SGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYI-TTADGSSVKFW  213 (268)
Q Consensus       167 --------------------------------d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l-~~~~~~~v~~w  213 (268)
                                                      +|.|+.||+.+++.+..++...++..-.++..+.++ +++.|+.++.|
T Consensus       422 ~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~  501 (689)
T 1yiq_A          422 KRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAY  501 (689)
T ss_dssp             CCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEE
T ss_pred             cccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEE
Confidence                                            378999999999998887765544443445454454 45568999999


Q ss_pred             eCCCceeeeEEeCCCCce--eeEEcCCCCCEEEe
Q 024372          214 DANHFGLVKGYNMPCNTE--SASLEPKLGNIFIA  245 (268)
Q Consensus       214 d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  245 (268)
                      |.++++.+..+..+....  ...+.. +|+++++
T Consensus       502 D~~tG~~lw~~~~~~~~~~~p~ty~~-~G~qyv~  534 (689)
T 1yiq_A          502 AADTGEKLWEQPAASGVMAAPVTYSV-DGEQYVT  534 (689)
T ss_dssp             ETTTCCEEEEEECSSCCCSCCEEEEE-TTEEEEE
T ss_pred             ECCCCccceeeeCCCCcccCceEEEE-CCEEEEE
Confidence            999999998888765433  233334 5665543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.98  E-value=2e-07  Score=83.62  Aligned_cols=233  Identities=12%  Similarity=0.046  Sum_probs=140.8

Q ss_pred             CcEEEEEeCCCCeEEeeCCCCCeEEEee--CccC--cEEE-EEecCCCcEEEEeeC-----CCcEEEEeCCCCCeeeeec
Q 024372           31 GFFLVSASKDSSPMLRNGETGDWIGTFE--GHKG--AVWS-CCLDANALFSASGSA-----DFTAKLWDALTGDEKHSFE  100 (268)
Q Consensus        31 g~~l~s~s~d~~i~iw~~~~~~~~~~~~--~h~~--~V~~-~~~~~~~~~l~s~s~-----D~~v~iw~~~~~~~~~~~~  100 (268)
                      +..++.++.|+.+..+|..+|+.+-++.  .+..  .+.+ ..+. ++..++..+.     ++.|+.+|..+++.+-.+.
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  193 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence            4477888899999999999998765443  2211  1110 0111 4544443332     7999999999999877654


Q ss_pred             cCCeE---------------------------------------EEEEECCCCCEEEEeeCC----------------Ce
Q 024372          101 HKHIV---------------------------------------RACAFSEDTHLLLTGGFE----------------KI  125 (268)
Q Consensus       101 ~~~~v---------------------------------------~~v~~~~~~~~l~s~~~d----------------~~  125 (268)
                      ...+.                                       ..+++.+....++.+..+                +.
T Consensus       194 ~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~  273 (571)
T 2ad6_A          194 ATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMT  273 (571)
T ss_dssp             SSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTE
T ss_pred             cCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEE
Confidence            32111                                       124455655566655432                25


Q ss_pred             EEEEECCCCCCCCeEecC-C--------cccEEEEEEeCCCC--cEEEEeeCCCeEEEEeCCCCceEEeecCCC------
Q 024372          126 LRIFDLNRPDAPPREVGN-S--------SGSIRTVAWLHSDQ--TILSSCTDSGGVRLWDARSGKIVQTLETKS------  188 (268)
Q Consensus       126 i~~~d~~~~~~~~~~~~~-~--------~~~v~~~~~~~~~~--~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~------  188 (268)
                      +..+|..+++...+.... +        ..++. +....++.  .+++.++.+|.+..+|.++|+.+..++...      
T Consensus       274 v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~  352 (571)
T 2ad6_A          274 IWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFK  352 (571)
T ss_dssp             EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred             EEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccc
Confidence            888888777644333221 1        11221 11112342  355566778999999999999876654211      


Q ss_pred             --------CE--------------------------EEEEECCCCcEEEE-e----------------------------
Q 024372          189 --------PV--------------------------TSAEVSRDGRYITT-A----------------------------  205 (268)
Q Consensus       189 --------~v--------------------------~~~~~s~~g~~l~~-~----------------------------  205 (268)
                              ++                          ..++++|+..++.. .                            
T Consensus       353 ~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~  432 (571)
T 2ad6_A          353 KVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMY  432 (571)
T ss_dssp             EECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred             cccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceec
Confidence                    11                          23567776554432 1                            


Q ss_pred             ---------CCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEeec
Q 024372          206 ---------DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       206 ---------~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~~  266 (268)
                               .++.|..||+.+++.+-.+..........+.. .+..++.++.|+.|+.||.++|+++-.+
T Consensus       433 ~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t-~gg~v~~g~~dg~l~a~D~~tG~~lw~~  501 (571)
T 2ad6_A          433 PGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYT-KGGLVWYATLDGYLKALDNKDGKELWNF  501 (571)
T ss_dssp             ECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEE-CCCEEEEEcCCCeEEEEECCCCCEEEEE
Confidence                     23679999999988877776543333332222 2556666899999999999999987553

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.95  E-value=4.1e-06  Score=69.25  Aligned_cols=238  Identities=10%  Similarity=0.048  Sum_probs=143.4

Q ss_pred             eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeC--------------------ccCcEEEEEecC-
Q 024372           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG--------------------HKGAVWSCCLDA-   71 (268)
Q Consensus        13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~--------------------h~~~V~~~~~~~-   71 (268)
                      .+.-....++++.|   +|+++.++..++.|..|+...++.. .+..                    .......+++.+ 
T Consensus        15 ~g~~~~p~~i~~d~---~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~   90 (322)
T 2fp8_A           15 EAPSYAPNSFTFDS---TNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQ   90 (322)
T ss_dssp             ECSSSCCCCEECCT---TCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETT
T ss_pred             CCccCCceEEEEcC---CCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCC
Confidence            33333445777874   7887888889999999988776543 2221                    113577889997 


Q ss_pred             CCcEEEEeeCCCcEEEEeCCCCCeeeeec-----cCCeEEEEEECC-CCCEEEEeeC-----------------CCeEEE
Q 024372           72 NALFSASGSADFTAKLWDALTGDEKHSFE-----HKHIVRACAFSE-DTHLLLTGGF-----------------EKILRI  128 (268)
Q Consensus        72 ~~~~l~s~s~D~~v~iw~~~~~~~~~~~~-----~~~~v~~v~~~~-~~~~l~s~~~-----------------d~~i~~  128 (268)
                      ++.++++. ..+.+..+|..++.......     .......+.+.+ ++++.++-..                 ++.+..
T Consensus        91 ~g~l~v~d-~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~  169 (322)
T 2fp8_A           91 NNQLYIVD-CYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIK  169 (322)
T ss_dssp             TTEEEEEE-TTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEE
T ss_pred             CCcEEEEE-CCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEE
Confidence            66655443 34457888876543222111     112467789999 9987766432                 356777


Q ss_pred             EECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCc--eEEee-cCCCCEEEEEECCCCcEEEEe
Q 024372          129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK--IVQTL-ETKSPVTSAEVSRDGRYITTA  205 (268)
Q Consensus       129 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~--~~~~~-~~~~~v~~~~~s~~g~~l~~~  205 (268)
                      ||..+++.  ............+++.+++..++++-...+.|..+|+....  ....+ .... ...+++.++|++.++.
T Consensus       170 ~d~~~~~~--~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~  246 (322)
T 2fp8_A          170 YDPSTKET--TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSS  246 (322)
T ss_dssp             EETTTTEE--EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEE
T ss_pred             EeCCCCEE--EEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEe
Confidence            88654321  11111111234578888877676665566899999987421  11111 1223 7889999999887664


Q ss_pred             -C----------CCeEEEEeCCCceeeeEEeCCC-----CceeeEEcCCCCCEEEeccCCCeEEEEECCCCc
Q 024372          206 -D----------GSSVKFWDANHFGLVKGYNMPC-----NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGE  261 (268)
Q Consensus       206 -~----------~~~v~~wd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~  261 (268)
                       .          .+.|..+|.. ++.+..+..+.     ....+.. . .++++++...+..|.+++.....
T Consensus       247 ~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~-~g~L~v~~~~~~~i~~~~~~~~~  315 (322)
T 2fp8_A          247 SEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-H-DGLLYIGTLFHGSVGILVYDKKG  315 (322)
T ss_dssp             EEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-E-TTEEEEECSSCSEEEEEEC----
T ss_pred             cCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-e-CCEEEEeecCCCceEEEeccccc
Confidence             3          2467778864 55666666542     1223333 3 57888887788889999986443

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.94  E-value=3e-07  Score=84.15  Aligned_cols=205  Identities=13%  Similarity=0.099  Sum_probs=132.2

Q ss_pred             CCCeEEeeCCCCCeEEEeeCccCc--------------------------------EEEEEecCCCcEEEEeeCCC----
Q 024372           40 DSSPMLRNGETGDWIGTFEGHKGA--------------------------------VWSCCLDANALFSASGSADF----   83 (268)
Q Consensus        40 d~~i~iw~~~~~~~~~~~~~h~~~--------------------------------V~~~~~~~~~~~l~s~s~D~----   83 (268)
                      ++.+..+|..+|+.+-++......                                ...+++++++..++.+..++    
T Consensus       189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~  268 (677)
T 1kb0_A          189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWS  268 (677)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred             CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCcccc
Confidence            688999999999987666432111                                12457788877777666553    


Q ss_pred             ---------------cEEEEeCCCCCeeeeecc--C--------CeEEEEEECCCC---CEEEEeeCCCeEEEEECCCCC
Q 024372           84 ---------------TAKLWDALTGDEKHSFEH--K--------HIVRACAFSEDT---HLLLTGGFEKILRIFDLNRPD  135 (268)
Q Consensus        84 ---------------~v~iw~~~~~~~~~~~~~--~--------~~v~~v~~~~~~---~~l~s~~~d~~i~~~d~~~~~  135 (268)
                                     .|..+|..+++.+-.+..  .        .....+....+|   ..++.++.++.+.++|..+++
T Consensus       269 ~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~  348 (677)
T 1kb0_A          269 HKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK  348 (677)
T ss_dssp             HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred             CCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCC
Confidence                           599999999998776642  1        111222333466   688899999999999988776


Q ss_pred             CCCeEecCCc---------c-cE------------------------EEEEEeCCCCcEEEEee----------------
Q 024372          136 APPREVGNSS---------G-SI------------------------RTVAWLHSDQTILSSCT----------------  165 (268)
Q Consensus       136 ~~~~~~~~~~---------~-~v------------------------~~~~~~~~~~~~~~~~~----------------  165 (268)
                      ..........         + ++                        ..++++|+.+.+++...                
T Consensus       349 ~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~  428 (677)
T 1kb0_A          349 FISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQ  428 (677)
T ss_dssp             EEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTC
T ss_pred             EeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccc
Confidence            4322211100         0 00                        13566777766555432                


Q ss_pred             --------------------------CCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEE-EEeCCCeEEEEeCCCc
Q 024372          166 --------------------------DSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYI-TTADGSSVKFWDANHF  218 (268)
Q Consensus       166 --------------------------~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l-~~~~~~~v~~wd~~~~  218 (268)
                                                ..+.|..||+.+++.+..++...++....++.++..+ +++.++.+++||.+++
T Consensus       429 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG  508 (677)
T 1kb0_A          429 AGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATG  508 (677)
T ss_dssp             CCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTC
T ss_pred             ccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCC
Confidence                                      1278999999999998877655554455555555554 4556899999999999


Q ss_pred             eeeeEEeCCCCce--eeEEcCCCCCEEEe
Q 024372          219 GLVKGYNMPCNTE--SASLEPKLGNIFIA  245 (268)
Q Consensus       219 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~  245 (268)
                      +.+..+..+....  ...+.. +|+++++
T Consensus       509 ~~lw~~~~~~~~~~~p~~y~~-~G~~~v~  536 (677)
T 1kb0_A          509 EKLWEAPTGTGVVAAPSTYMV-DGRQYVS  536 (677)
T ss_dssp             CEEEEEECSSCCCSCCEEEEE-TTEEEEE
T ss_pred             ceeeeeeCCCCcccCCEEEEe-CCEEEEE
Confidence            9999998765432  223334 4665443

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.93  E-value=5.5e-07  Score=71.84  Aligned_cols=188  Identities=13%  Similarity=0.109  Sum_probs=124.0

Q ss_pred             CeEEEeeCcc--CcEEEEEecCCCcEEEEeeCCC--cEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEe-eCCCeE
Q 024372           52 DWIGTFEGHK--GAVWSCCLDANALFSASGSADF--TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTG-GFEKIL  126 (268)
Q Consensus        52 ~~~~~~~~h~--~~V~~~~~~~~~~~l~s~s~D~--~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~-~~d~~i  126 (268)
                      +.++++. |.  .-...+.|+ ++.+..+.+.++  .|+..|+.+++.................+++..|+.. -.++.+
T Consensus        32 ~vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v  109 (262)
T 3nol_A           32 QIVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLG  109 (262)
T ss_dssp             EEEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEE
T ss_pred             EEEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEE
Confidence            4556664 43  345788888 566667777766  8999999999998887654433332223334455544 468899


Q ss_pred             EEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCC------CCEEEEEECCCCc
Q 024372          127 RIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK------SPVTSAEVSRDGR  200 (268)
Q Consensus       127 ~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~------~~v~~~~~s~~g~  200 (268)
                      .+||..+.+...+......+  ..++  ++++.++.+.. ++.|.++|..+.+.+.++...      ..++.+.+. +|+
T Consensus       110 ~v~D~~t~~~~~ti~~~~eG--~glt--~dg~~L~~SdG-s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~  183 (262)
T 3nol_A          110 FVWNIRNLRQVRSFNYDGEG--WGLT--HNDQYLIMSDG-TPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE  183 (262)
T ss_dssp             EEEETTTCCEEEEEECSSCC--CCEE--ECSSCEEECCS-SSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred             EEEECccCcEEEEEECCCCc--eEEe--cCCCEEEEECC-CCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE
Confidence            99998765433222222222  2233  45667766644 578999999999988876541      235567776 777


Q ss_pred             EEEEe-CCCeEEEEeCCCceeeeEEeCCC-------------CceeeEEcCCCCCEEEecc
Q 024372          201 YITTA-DGSSVKFWDANHFGLVKGYNMPC-------------NTESASLEPKLGNIFIAGG  247 (268)
Q Consensus       201 ~l~~~-~~~~v~~wd~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~gs  247 (268)
                      +.+.. .++.|.+.|.++++.+..+....             -...+++.+..+++|++|=
T Consensus       184 lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          184 IFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             EEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             EEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            66655 46799999999999888887631             1245777886677777774

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.93  E-value=4.3e-07  Score=82.97  Aligned_cols=234  Identities=13%  Similarity=0.106  Sum_probs=146.1

Q ss_pred             CcEEEEEeCCCCeEEeeCCCCCeEEEeeCcc----CcEEE-EEecCCCcEEEEee-----CCCcEEEEeCCCCCeeeeec
Q 024372           31 GFFLVSASKDSSPMLRNGETGDWIGTFEGHK----GAVWS-CCLDANALFSASGS-----ADFTAKLWDALTGDEKHSFE  100 (268)
Q Consensus        31 g~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~----~~V~~-~~~~~~~~~l~s~s-----~D~~v~iw~~~~~~~~~~~~  100 (268)
                      +..++.++.|+.+..+|..+|+.+-++....    ..+.. ..+ .++..++..+     .++.|+.+|..+++.+-.+.
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v-~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  195 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRV-VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY  195 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEE-ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence            4578889999999999999999775554311    01110 001 1444444322     25899999999999877664


Q ss_pred             cC--C------------------------------eEEEEEECCCCCEEEEeeCCCe-------------------EEEE
Q 024372          101 HK--H------------------------------IVRACAFSEDTHLLLTGGFEKI-------------------LRIF  129 (268)
Q Consensus       101 ~~--~------------------------------~v~~v~~~~~~~~l~s~~~d~~-------------------i~~~  129 (268)
                      ..  .                              ....+++.++..+++.+..++.                   |.-+
T Consensus       196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al  275 (668)
T 1kv9_A          196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI  275 (668)
T ss_dssp             SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred             ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence            21  0                              0123577887778888876653                   8888


Q ss_pred             ECCCCCCCCeEecC-Cc-------ccEEEEEEeCCCC--cEEEEeeCCCeEEEEeCCCCceEEeecCCC-----------
Q 024372          130 DLNRPDAPPREVGN-SS-------GSIRTVAWLHSDQ--TILSSCTDSGGVRLWDARSGKIVQTLETKS-----------  188 (268)
Q Consensus       130 d~~~~~~~~~~~~~-~~-------~~v~~~~~~~~~~--~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~-----------  188 (268)
                      |..+++...+.... +.       .+........++.  .+++.++.+|.+.++|.++|+.+...+...           
T Consensus       276 D~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~  355 (668)
T 1kv9_A          276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLAT  355 (668)
T ss_dssp             CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTT
T ss_pred             cCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccccc
Confidence            98877654443321 21       1222222222332  246677788999999999999874332110           


Q ss_pred             --------------------------CEEEEEECCCCcEEEE-e------------------------------------
Q 024372          189 --------------------------PVTSAEVSRDGRYITT-A------------------------------------  205 (268)
Q Consensus       189 --------------------------~v~~~~~s~~g~~l~~-~------------------------------------  205 (268)
                                                ....++++|+..++.. .                                    
T Consensus       356 g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~  435 (668)
T 1kv9_A          356 GRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAV  435 (668)
T ss_dssp             CCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGG
T ss_pred             CCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCC
Confidence                                      0112567776544321 0                                    


Q ss_pred             CCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEeec
Q 024372          206 DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       206 ~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~~  266 (268)
                      .++.|..||+.+++.+-.+..........+.. .+.++++|+.|+.++.||.++|+++..+
T Consensus       436 ~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t-~gg~vf~g~~dg~l~a~d~~tG~~l~~~  495 (668)
T 1kv9_A          436 VSGALLAWDPVKQKAAWKVPYPTHWNGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQF  495 (668)
T ss_dssp             CEEEEEEEETTTTEEEEEEEESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             ccceEEEEeCCCCcEEEEccCCCCCcCceeEe-CCCEEEEECCcccchhhhhhcChhheEe
Confidence            12679999999998887776544433333333 3677778899999999999999988654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.93  E-value=6.8e-07  Score=71.39  Aligned_cols=177  Identities=11%  Similarity=0.051  Sum_probs=122.3

Q ss_pred             CeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcE--EEEEecCCCcEEEEeeCCCcEEEEeCCCCCe
Q 024372           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAV--WSCCLDANALFSASGSADFTAKLWDALTGDE   95 (268)
Q Consensus        18 ~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V--~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~   95 (268)
                      ...+|.|+    ++.+..+.+.++.|+++|..+|+.++++ -. ...  ..+++..+..+ ...-.++.+.++|..+.+.
T Consensus        56 ftqGL~~~----~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g~~Ly-~ltw~~~~v~V~D~~Tl~~  128 (268)
T 3nok_A           56 FTQGLVFH----QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDGERLY-QLTWTEGLLFTWSGMPPQR  128 (268)
T ss_dssp             CEEEEEEE----TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECSSCEE-EEESSSCEEEEEETTTTEE
T ss_pred             ccceEEEE----CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeCCEEE-EEEccCCEEEEEECCcCcE
Confidence            44699997    5678888888889999999999987776 22 223  33555544333 4455789999999999999


Q ss_pred             eeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEec-CC---cccEEEEEEeCCCCcEEEEeeCCCeEE
Q 024372           96 KHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG-NS---SGSIRTVAWLHSDQTILSSCTDSGGVR  171 (268)
Q Consensus        96 ~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~-~~---~~~v~~~~~~~~~~~~~~~~~~d~~i~  171 (268)
                      +.++.....-..++  ++++.|+.+..++.|.++|..+.+...+..- ..   -..++.+.|. + +.+.+....++.|.
T Consensus       129 ~~ti~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-d-G~lyanvw~s~~I~  204 (268)
T 3nok_A          129 ERTTRYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-N-GVIYANIWHSSDVL  204 (268)
T ss_dssp             EEEEECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T-TEEEEEETTCSEEE
T ss_pred             EEEEeCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-C-CEEEEEECCCCeEE
Confidence            88887544322333  5677888777789999999876543222111 11   1234566765 3 45777776678999


Q ss_pred             EEeCCCCceEEeecCC--------------CCEEEEEECCCCc-EEEEe
Q 024372          172 LWDARSGKIVQTLETK--------------SPVTSAEVSRDGR-YITTA  205 (268)
Q Consensus       172 iwd~~~~~~~~~~~~~--------------~~v~~~~~s~~g~-~l~~~  205 (268)
                      +-|.++++.+.++...              ...+.|+++|+++ +++++
T Consensus       205 vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          205 EIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             EECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             EEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            9999999998876532              2468999999865 44554

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.93  E-value=1.2e-07  Score=81.32  Aligned_cols=177  Identities=14%  Similarity=0.167  Sum_probs=122.3

Q ss_pred             CCCcEEEEEeCC------CCeEEeeCCCCCeEEEeeCccC---cEEEEEecCCCcEEEEee-------------------
Q 024372           29 PDGFFLVSASKD------SSPMLRNGETGDWIGTFEGHKG---AVWSCCLDANALFSASGS-------------------   80 (268)
Q Consensus        29 ~dg~~l~s~s~d------~~i~iw~~~~~~~~~~~~~h~~---~V~~~~~~~~~~~l~s~s-------------------   80 (268)
                      |+| +++++..+      +.+.+.|..+++.++++.--.+   .-+.+.|+|+++.+++..                   
T Consensus       147 pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~  225 (462)
T 2ece_A          147 PDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDR  225 (462)
T ss_dssp             SSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHH
T ss_pred             CCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhc
Confidence            588 77777776      7899999999999999963222   234577899999888875                   


Q ss_pred             CCCcEEEEeCCCCCeeeeeccC---CeEEEEEE--CCCCCEEEEee------CCCeEEEEECCCCCCCC-eEe--cC---
Q 024372           81 ADFTAKLWDALTGDEKHSFEHK---HIVRACAF--SEDTHLLLTGG------FEKILRIFDLNRPDAPP-REV--GN---  143 (268)
Q Consensus        81 ~D~~v~iw~~~~~~~~~~~~~~---~~v~~v~~--~~~~~~l~s~~------~d~~i~~~d~~~~~~~~-~~~--~~---  143 (268)
                      .+.+|.+||+.+++.+.++...   ...+.+.|  +|+++.++.++      .+++|.+|..+.+.... +.+  ..   
T Consensus       226 ~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v  305 (462)
T 2ece_A          226 YGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPL  305 (462)
T ss_dssp             SCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEEC
T ss_pred             cCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccc
Confidence            3789999999988877777654   23445555  99999888776      45677655432211000 000  00   


Q ss_pred             -------------CcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCC---CceEEeecCCC---------------CEEE
Q 024372          144 -------------SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS---GKIVQTLETKS---------------PVTS  192 (268)
Q Consensus       144 -------------~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~---~~~~~~~~~~~---------------~v~~  192 (268)
                                   .......+.+++++..+.++....+.|.++|+..   .+.+..+...+               ....
T Consensus       306 ~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~  385 (462)
T 2ece_A          306 EGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQM  385 (462)
T ss_dssp             CSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCC
T ss_pred             cccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCE
Confidence                         0123567888999999999988889999999852   34555554321               2578


Q ss_pred             EEECCCCcEEEEeC
Q 024372          193 AEVSRDGRYITTAD  206 (268)
Q Consensus       193 ~~~s~~g~~l~~~~  206 (268)
                      +.++|||++|..+.
T Consensus       386 ~~lSpDGk~LyVaN  399 (462)
T 2ece_A          386 LEISRDGRRVYVTN  399 (462)
T ss_dssp             EEECTTSSEEEEEC
T ss_pred             EEEcCCCCEEEEEc
Confidence            99999999886554

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.90  E-value=6e-07  Score=74.04  Aligned_cols=213  Identities=12%  Similarity=0.035  Sum_probs=136.9

Q ss_pred             cEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeecc-CCeEEEEEE
Q 024372           32 FFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEH-KHIVRACAF  110 (268)
Q Consensus        32 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~-~~~v~~v~~  110 (268)
                      ..|..++.++.+..+|.. ++....+..+...+.++...+++.+ ..++.++.+..+|.. +.....+.. ...+.++..
T Consensus       108 ~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l-~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~  184 (330)
T 3hxj_A          108 DILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTI-YVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASI  184 (330)
T ss_dssp             TEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCE-EEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEE
T ss_pred             CEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEE-EEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEE
Confidence            357778889999999988 8777666655556666667777765 446678999999988 666555543 334556667


Q ss_pred             CCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCCC-
Q 024372          111 SEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSP-  189 (268)
Q Consensus       111 ~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~-  189 (268)
                      .+++.+.+..   +.+..+| .+++... ........+.++...+++ .+.++ +.++.|..+|. +++.+..+..... 
T Consensus       185 d~~g~l~v~t---~~l~~~d-~~g~~~~-~~~~~~~~~~~~~~~~~g-~l~v~-t~~~gl~~~~~-~g~~~~~~~~~~~~  256 (330)
T 3hxj_A          185 GKDGTIYFGS---DKVYAIN-PDGTEKW-NFYAGYWTVTRPAISEDG-TIYVT-SLDGHLYAINP-DGTEKWRFKTGKRI  256 (330)
T ss_dssp             CTTCCEEEES---SSEEEEC-TTSCEEE-EECCSSCCCSCCEECTTS-CEEEE-ETTTEEEEECT-TSCEEEEEECSSCC
T ss_pred             cCCCEEEEEe---CEEEEEC-CCCcEEE-EEccCCcceeceEECCCC-eEEEE-cCCCeEEEECC-CCCEeEEeeCCCCc
Confidence            7778765544   7788888 4433221 222222345556655544 45444 45578888884 5666655543322 


Q ss_pred             EEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEeCCCCce-eeEEcCCCCCEEEeccCCCeEEEEECC
Q 024372          190 VTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTE-SASLEPKLGNIFIAGGEDMWVHVFDFH  258 (268)
Q Consensus       190 v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~gs~d~~i~~wd~~  258 (268)
                      ...+.+.+++++.+++.++.|..+|. +++.+..+..+.... +..... +|. +..|+.++.+++...+
T Consensus       257 ~~~~~~~~~g~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~-~g~-l~~gt~~G~~~~~~~~  323 (330)
T 3hxj_A          257 ESSPVIGNTDTIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDE-NGT-IYFGTRNGKFYALFNL  323 (330)
T ss_dssp             CSCCEECTTSCEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECT-TCC-EEEECTTSCEEEEEC-
T ss_pred             cccceEcCCCeEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcC-CCE-EEEEcCCCeEEEEecc
Confidence            34566778888888888888999996 566666666554433 333323 455 6668889999888754

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.87  E-value=1.9e-06  Score=68.14  Aligned_cols=182  Identities=14%  Similarity=0.100  Sum_probs=120.8

Q ss_pred             ecCC--CeeeEEEecCCCCCcEEEEEeCCC--CeEEeeCCCCCeEEEeeCccCc-EEEEEecCCCcEEEEeeCCCcEEEE
Q 024372           14 GHSR--PVVDLFYSPITPDGFFLVSASKDS--SPMLRNGETGDWIGTFEGHKGA-VWSCCLDANALFSASGSADFTAKLW   88 (268)
Q Consensus        14 ~h~~--~v~~~~f~~~~~dg~~l~s~s~d~--~i~iw~~~~~~~~~~~~~h~~~-V~~~~~~~~~~~l~s~s~D~~v~iw   88 (268)
                      .|..  ...+|.|+    ++.+..+.+.++  .++..|..+|+.++++.-.... -..+++.. +.+....-.++.+.++
T Consensus        16 phd~~~ftqGL~~~----~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~-~~ly~ltw~~~~v~v~   90 (243)
T 3mbr_X           16 PHDTTAFTEGLFYL----RGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWR-DRLIQLTWRNHEGFVY   90 (243)
T ss_dssp             ECCTTCCEEEEEEE----TTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEESSSSEEEEE
T ss_pred             CCCCccccccEEEE----CCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeC-CEEEEEEeeCCEEEEE
Confidence            5654  56699998    356666666654  7899999999998887643221 12334443 3333445678999999


Q ss_pred             eCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEec-CC---cccEEEEEEeCCCCcEEEEe
Q 024372           89 DALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG-NS---SGSIRTVAWLHSDQTILSSC  164 (268)
Q Consensus        89 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~-~~---~~~v~~~~~~~~~~~~~~~~  164 (268)
                      |..+.+.+.++..+..-..++  ++++.|+.+..++.|.++|..+.+...+... ..   ...++.+.+.  ++.+++..
T Consensus        91 D~~tl~~~~ti~~~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~--~G~lyanv  166 (243)
T 3mbr_X           91 DLATLTPRARFRYPGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV--NGELLANV  166 (243)
T ss_dssp             ETTTTEEEEEEECSSCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEE
T ss_pred             ECCcCcEEEEEeCCCCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe--CCEEEEEE
Confidence            999999998887654323343  4566666666788999999876442211111 11   1234556654  44577776


Q ss_pred             eCCCeEEEEeCCCCceEEeecCC--------------CCEEEEEECCCCcEEEE
Q 024372          165 TDSGGVRLWDARSGKIVQTLETK--------------SPVTSAEVSRDGRYITT  204 (268)
Q Consensus       165 ~~d~~i~iwd~~~~~~~~~~~~~--------------~~v~~~~~s~~g~~l~~  204 (268)
                      ..++.|.+-|.++++.+..+...              ...+.|+++|+++.|..
T Consensus       167 w~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfV  220 (243)
T 3mbr_X          167 WLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFV  220 (243)
T ss_dssp             TTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEE
T ss_pred             CCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEE
Confidence            66789999999999998876521              23689999998765543

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.86  E-value=9.9e-07  Score=79.34  Aligned_cols=230  Identities=14%  Similarity=0.056  Sum_probs=138.3

Q ss_pred             EEEEeCCCCeEEeeCCCCCeEEEee--CccC--cEEE-EEecCCCcEEEEee-----CCCcEEEEeCCCCCeeeeeccCC
Q 024372           34 LVSASKDSSPMLRNGETGDWIGTFE--GHKG--AVWS-CCLDANALFSASGS-----ADFTAKLWDALTGDEKHSFEHKH  103 (268)
Q Consensus        34 l~s~s~d~~i~iw~~~~~~~~~~~~--~h~~--~V~~-~~~~~~~~~l~s~s-----~D~~v~iw~~~~~~~~~~~~~~~  103 (268)
                      ++.++.|+.+.-+|..+|+.+=+..  .+..  .+.+ -.+. ++..++.++     .++.|+.+|..+++.+-.+....
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~  202 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATG  202 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSS
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCC
Confidence            7778899999999999998764433  2110  1110 0111 454444332     38999999999999876654322


Q ss_pred             eE---------------------------------------EEEEECCCCCEEEEeeCC----------------CeEEE
Q 024372          104 IV---------------------------------------RACAFSEDTHLLLTGGFE----------------KILRI  128 (268)
Q Consensus       104 ~v---------------------------------------~~v~~~~~~~~l~s~~~d----------------~~i~~  128 (268)
                      +.                                       ...++.+...+++.+..+                +.+.-
T Consensus       203 ~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~A  282 (599)
T 1w6s_A          203 PDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFG  282 (599)
T ss_dssp             CHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEE
T ss_pred             CccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEE
Confidence            11                                       123455666677766654                37888


Q ss_pred             EECCCCCCCCeEecC-Cc--------ccEEEEEEe-CCCC--cEEEEeeCCCeEEEEeCCCCceEEeecCCC--------
Q 024372          129 FDLNRPDAPPREVGN-SS--------GSIRTVAWL-HSDQ--TILSSCTDSGGVRLWDARSGKIVQTLETKS--------  188 (268)
Q Consensus       129 ~d~~~~~~~~~~~~~-~~--------~~v~~~~~~-~~~~--~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~--------  188 (268)
                      +|..+++........ +.        .++. +... .++.  .+++.++.+|.+.++|.++|+.+.......        
T Consensus       283 ld~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~  361 (599)
T 1w6s_A          283 RDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSV  361 (599)
T ss_dssp             EETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEE
T ss_pred             EeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCccccccc
Confidence            888877654433322 21        1121 1211 2332  456667788999999999999876543210        


Q ss_pred             ------C--------------------------EEEEEECCCCcEEEE--------------------------------
Q 024372          189 ------P--------------------------VTSAEVSRDGRYITT--------------------------------  204 (268)
Q Consensus       189 ------~--------------------------v~~~~~s~~g~~l~~--------------------------------  204 (268)
                            +                          ...++++|+..++..                                
T Consensus       362 ~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~  441 (599)
T 1w6s_A          362 DLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPG  441 (599)
T ss_dssp             CTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEEC
T ss_pred             ccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccC
Confidence                  0                          123455665443321                                


Q ss_pred             --e------CCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEeec
Q 024372          205 --A------DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       205 --~------~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~~  266 (268)
                        +      ..+.|..||+.+++.+-.+..........+.. .+.++..|+.|+.++.||.++|+++-.+
T Consensus       442 p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~t-agg~vf~gt~dg~l~A~D~~tG~~lW~~  510 (599)
T 1w6s_A          442 PKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMAT-AGDLVFYGTLDGYLKARDSDTGDLLWKF  510 (599)
T ss_dssp             TTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEe-cCCEEEEECCCCeEEEEECCCCCEEEEe
Confidence              1      23678899999888776665433222222222 3566667899999999999999987543

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.83  E-value=1.4e-07  Score=77.95  Aligned_cols=217  Identities=17%  Similarity=0.077  Sum_probs=128.4

Q ss_pred             CCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeecc-CCeEEEE
Q 024372           30 DGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEH-KHIVRAC  108 (268)
Q Consensus        30 dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~-~~~v~~v  108 (268)
                      +|. |..++.+  +..+|. +++.+..+..+........+. ++ .+..++.++.+..+|.. +........ ...+.++
T Consensus        70 ~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~-~~-~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~  142 (330)
T 3hxj_A           70 DGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF-ED-ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATP  142 (330)
T ss_dssp             TTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE-TT-EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCC
T ss_pred             CCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE-CC-EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeee
Confidence            554 4445555  777775 565443333222222222333 34 45567778899999987 666555443 2334555


Q ss_pred             EECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCC-
Q 024372          109 AFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-  187 (268)
Q Consensus       109 ~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-  187 (268)
                      ...+++. +..++.++.+..+|.. ++... ........+.++...+++ .+.++.   +.|..+| .+++.+..+... 
T Consensus       143 ~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~-~~~~~~~~~~~~~~d~~g-~l~v~t---~~l~~~d-~~g~~~~~~~~~~  214 (330)
T 3hxj_A          143 IVSEDGT-IYVGSNDNYLYAINPD-GTEKW-RFKTNDAITSAASIGKDG-TIYFGS---DKVYAIN-PDGTEKWNFYAGY  214 (330)
T ss_dssp             EECTTSC-EEEECTTSEEEEECTT-SCEEE-EEECSSCCCSCCEECTTC-CEEEES---SSEEEEC-TTSCEEEEECCSS
T ss_pred             EEcCCCE-EEEEcCCCEEEEECCC-CCEeE-EEecCCCceeeeEEcCCC-EEEEEe---CEEEEEC-CCCcEEEEEccCC
Confidence            6666776 4556778899999976 43222 222222334444544444 455443   7799999 777777665533 


Q ss_pred             CCEEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEeCCCCce-eeEEcCCCCCEEEeccCCCeEEEEECCCCcEEee
Q 024372          188 SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTE-SASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       188 ~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~  265 (268)
                      ..+.++...++|.+.+++.++.+..+|. +.+.+..+....... .....+  +..+..++.++.|+.+|. +|+.+..
T Consensus       215 ~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~--~g~l~v~t~~ggl~~~d~-~g~~~~~  289 (330)
T 3hxj_A          215 WTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGN--TDTIYFGSYDGHLYAINP-DGTEKWN  289 (330)
T ss_dssp             CCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECT--TSCEEEECTTCEEEEECT-TSCEEEE
T ss_pred             cceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcC--CCeEEEecCCCCEEEECC-CCcEEEE
Confidence            4477888899998888887788888885 445555555433322 223322  345667777878999995 6776544

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.77  E-value=1.8e-06  Score=68.91  Aligned_cols=186  Identities=14%  Similarity=0.092  Sum_probs=124.5

Q ss_pred             CeEEEeeCcc--CcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeeccCCeEE--EEEECCCCCEEEEeeCCCeEE
Q 024372           52 DWIGTFEGHK--GAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVR--ACAFSEDTHLLLTGGFEKILR  127 (268)
Q Consensus        52 ~~~~~~~~h~--~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~--~v~~~~~~~~l~s~~~d~~i~  127 (268)
                      +.++++. |.  .-...+.|+. +.+..+.+.++.|++.|+.+++....+ ......  .+.+.. +++.+..-.++.+.
T Consensus        44 ~Vv~~~p-hd~~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g-~~Ly~ltw~~~~v~  119 (268)
T 3nok_A           44 HIIREYP-HATNAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDG-ERLYQLTWTEGLLF  119 (268)
T ss_dssp             EEEEEEE-CCTTCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECS-SCEEEEESSSCEEE
T ss_pred             EEEEEEc-CCCccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeC-CEEEEEEccCCEEE
Confidence            4556664 43  3457888874 566678888899999999999987776 443332  344433 34444556789999


Q ss_pred             EEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCC------CCEEEEEECCCCcE
Q 024372          128 IFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK------SPVTSAEVSRDGRY  201 (268)
Q Consensus       128 ~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~------~~v~~~~~s~~g~~  201 (268)
                      +||..+.+...+......+  ..++  ++++.++.+. .++.|.++|.++.+.+.++...      ..++.+.+. +|++
T Consensus       120 V~D~~Tl~~~~ti~~~~eG--wGLt--~Dg~~L~vSd-Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~l  193 (268)
T 3nok_A          120 TWSGMPPQRERTTRYSGEG--WGLC--YWNGKLVRSD-GGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVI  193 (268)
T ss_dssp             EEETTTTEEEEEEECSSCC--CCEE--EETTEEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred             EEECCcCcEEEEEeCCCce--eEEe--cCCCEEEEEC-CCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEE
Confidence            9998765433222222222  2333  4566676665 4689999999999998877532      245667777 7776


Q ss_pred             EEEe-CCCeEEEEeCCCceeeeEEeCCC--------------CceeeEEcCCCCCEEEecc
Q 024372          202 ITTA-DGSSVKFWDANHFGLVKGYNMPC--------------NTESASLEPKLGNIFIAGG  247 (268)
Q Consensus       202 l~~~-~~~~v~~wd~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~gs  247 (268)
                      .+.. .+..|.+.|.++++.+..+....              -...+++.+..+++|+||=
T Consensus       194 yanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          194 YANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             EEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             EEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            6655 46799999999998888876531              1245777887788888874

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.77  E-value=3.8e-06  Score=75.47  Aligned_cols=232  Identities=15%  Similarity=0.088  Sum_probs=139.1

Q ss_pred             CcEEEEEeCCCCeEEeeCCCCCeEEEeeCcc---------CcEEEEEec-CCCc-EEEEee------CCCcEEEEeCCCC
Q 024372           31 GFFLVSASKDSSPMLRNGETGDWIGTFEGHK---------GAVWSCCLD-ANAL-FSASGS------ADFTAKLWDALTG   93 (268)
Q Consensus        31 g~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~---------~~V~~~~~~-~~~~-~l~s~s------~D~~v~iw~~~~~   93 (268)
                      +..++.++.|+.+.-.|..+|+.+=++....         .++  +.=. .+++ .++.++      .++.|+.+|..++
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~--v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG  194 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPT--IVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTG  194 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCE--EEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTC
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCE--EeCCCcCCcEEEEEeccccccCCCCEEEEEECCCC
Confidence            3467788999999999999998764443221         122  1101 1222 444443      3789999999999


Q ss_pred             CeeeeeccCC-eE-----------------------------------------EEEEECCCCCEEEEeeC---------
Q 024372           94 DEKHSFEHKH-IV-----------------------------------------RACAFSEDTHLLLTGGF---------  122 (268)
Q Consensus        94 ~~~~~~~~~~-~v-----------------------------------------~~v~~~~~~~~l~s~~~---------  122 (268)
                      +.+-...... .+                                         ...++.|...+++.+..         
T Consensus       195 ~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~  274 (582)
T 1flg_A          195 EEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWA  274 (582)
T ss_dssp             CEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGG
T ss_pred             CEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcc
Confidence            8766543211 00                                         12345566666766552         


Q ss_pred             -----------C----CeEEEEECCCCCCCCeEec-CCc--------ccEEEEEEe-CCCC--cEEEEeeCCCeEEEEeC
Q 024372          123 -----------E----KILRIFDLNRPDAPPREVG-NSS--------GSIRTVAWL-HSDQ--TILSSCTDSGGVRLWDA  175 (268)
Q Consensus       123 -----------d----~~i~~~d~~~~~~~~~~~~-~~~--------~~v~~~~~~-~~~~--~~~~~~~~d~~i~iwd~  175 (268)
                                 |    +.+.-+|..+++....... .+.        .++. +... .++.  .+++.++.+|.+.++|.
T Consensus       275 r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~  353 (582)
T 1flg_A          275 RTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDR  353 (582)
T ss_dssp             GSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEET
T ss_pred             cccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEEC
Confidence                       2    5788889887765544332 121        1221 1211 2343  35666778899999999


Q ss_pred             CCCceEEeecCCCC----------------------------------------------EEEEEECCCCcE-EEEe---
Q 024372          176 RSGKIVQTLETKSP----------------------------------------------VTSAEVSRDGRY-ITTA---  205 (268)
Q Consensus       176 ~~~~~~~~~~~~~~----------------------------------------------v~~~~~s~~g~~-l~~~---  205 (268)
                      ++|+.+..+.....                                              ...++++|+..+ ++..   
T Consensus       354 ~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~  433 (582)
T 1flg_A          354 SNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHW  433 (582)
T ss_dssp             TTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECE
T ss_pred             CCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhc
Confidence            99998765532210                                              013455555332 2221   


Q ss_pred             ------------------------------CCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEE
Q 024372          206 ------------------------------DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVF  255 (268)
Q Consensus       206 ------------------------------~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~w  255 (268)
                                                    ..+.|..||+.+++.+-.+............. .+.+++.|+.|+.++.|
T Consensus       434 ~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~t-agglvf~g~~dg~l~A~  512 (582)
T 1flg_A          434 KEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLAT-AGNLVFTGTGDGYFKAF  512 (582)
T ss_dssp             EEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEE-TTTEEEEECTTSEEEEE
T ss_pred             ceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccceEe-CCCEEEEECCCCcEEEE
Confidence                                          14678999999988876665443332222222 35667779999999999


Q ss_pred             ECCCCcEEeec
Q 024372          256 DFHTGEQIAIT  266 (268)
Q Consensus       256 d~~~g~~~~~~  266 (268)
                      |.++|+++-.+
T Consensus       513 D~~tG~~lW~~  523 (582)
T 1flg_A          513 DAKSGKELWKF  523 (582)
T ss_dssp             ETTTCCEEEEE
T ss_pred             ECCCCCEEEEe
Confidence            99999998653

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.77  E-value=3.6e-05  Score=61.50  Aligned_cols=200  Identities=11%  Similarity=0.124  Sum_probs=132.1

Q ss_pred             eeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeC-ccCcEEEEEecCCCcEEEEeeCCCcEEEEeC
Q 024372           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG-HKGAVWSCCLDANALFSASGSADFTAKLWDA   90 (268)
Q Consensus        12 ~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~-h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~   90 (268)
                      +.|=.+.+.+++|+|.  ++.+.+..-.++.|...|.. ++.++++.- -......+++.+++.++++.-.++.+.++++
T Consensus        22 l~g~~~~lSGla~~~~--~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v   98 (255)
T 3qqz_A           22 IAGITNNISSLTWSAQ--SNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL   98 (255)
T ss_dssp             CTTCCSCEEEEEEETT--TTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred             CCCcccCcceeEEeCC--CCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence            3455567999999962  34444456667777778887 888877742 1245677888888888777667788999887


Q ss_pred             CCCCe---eeeec-------cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCC--CCCCCeEec-------CCcccEEEE
Q 024372           91 LTGDE---KHSFE-------HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNR--PDAPPREVG-------NSSGSIRTV  151 (268)
Q Consensus        91 ~~~~~---~~~~~-------~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~--~~~~~~~~~-------~~~~~v~~~  151 (268)
                      .....   .....       .......++++|.++.|+++.......+|.+..  .........       ........+
T Consensus        99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l  178 (255)
T 3qqz_A           99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA  178 (255)
T ss_dssp             CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred             CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence            65442   12221       122357899999887777766554555555431  001112111       122346789


Q ss_pred             EEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCC----------CCEEEEEECCCCcEEEEeCCCeEEEEeC
Q 024372          152 AWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK----------SPVTSAEVSRDGRYITTADGSSVKFWDA  215 (268)
Q Consensus       152 ~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~----------~~v~~~~~s~~g~~l~~~~~~~v~~wd~  215 (268)
                      ++.|..+++++.+...+.|..+|.. ++.+..+...          .....+++.|+|++.++++...+..+..
T Consensus       179 ~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f~~  251 (255)
T 3qqz_A          179 EFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFTP  251 (255)
T ss_dssp             EEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEEEC
T ss_pred             EEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCceEEEEEe
Confidence            9999998888888888899999976 6666554322          3579999999999888887766655543

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.66  E-value=1.2e-05  Score=63.59  Aligned_cols=188  Identities=12%  Similarity=0.076  Sum_probs=122.1

Q ss_pred             CeEEEeeCcc--CcEEEEEecCCCcEEEEeeCC--CcEEEEeCCCCCeeeeeccCCeEEEEEECCCCC-EEEEeeCCCeE
Q 024372           52 DWIGTFEGHK--GAVWSCCLDANALFSASGSAD--FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTH-LLLTGGFEKIL  126 (268)
Q Consensus        52 ~~~~~~~~h~--~~V~~~~~~~~~~~l~s~s~D--~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~-~l~s~~~d~~i  126 (268)
                      +.++++. |.  +-+..+.|++ +.+..|.+.+  ..|+..|+.+++.................+.+. +....-.++.+
T Consensus        10 ~v~~~~p-hd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v   87 (243)
T 3mbr_X           10 RVVKRYP-HDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEG   87 (243)
T ss_dssp             EEEEEEE-CCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEE
T ss_pred             EEEEEcC-CCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEE
Confidence            4556663 53  4567888886 5555666665  489999999999988876544333222222233 44445578899


Q ss_pred             EEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCC------CCEEEEEECCCCc
Q 024372          127 RIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK------SPVTSAEVSRDGR  200 (268)
Q Consensus       127 ~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~------~~v~~~~~s~~g~  200 (268)
                      .+||..+.+...+......+  ..++  ++++.++++-. ++.|.++|.++.+.+.+++..      ..++-+.+. +|+
T Consensus        88 ~v~D~~tl~~~~ti~~~~~G--wglt--~dg~~L~vSdg-s~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~  161 (243)
T 3mbr_X           88 FVYDLATLTPRARFRYPGEG--WALT--SDDSHLYMSDG-TAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGE  161 (243)
T ss_dssp             EEEETTTTEEEEEEECSSCC--CEEE--ECSSCEEEECS-SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred             EEEECCcCcEEEEEeCCCCc--eEEe--eCCCEEEEECC-CCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCE
Confidence            99998765432222222222  2343  45667776654 589999999999988877542      245666665 666


Q ss_pred             EEEEe-CCCeEEEEeCCCceeeeEEeCCC--------------CceeeEEcCCCCCEEEecc
Q 024372          201 YITTA-DGSSVKFWDANHFGLVKGYNMPC--------------NTESASLEPKLGNIFIAGG  247 (268)
Q Consensus       201 ~l~~~-~~~~v~~wd~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~gs  247 (268)
                      ..+.. .+..|.+.|.++++.+..+....              -...+++.+..+++|+||=
T Consensus       162 lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          162 LLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             EEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             EEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            66554 46799999999998888876431              1235677776677888874

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.66  E-value=7.6e-06  Score=75.77  Aligned_cols=237  Identities=10%  Similarity=-0.025  Sum_probs=128.5

Q ss_pred             CeeeEEEecCCCCCcEEEEEeC-CC----CeEEeeCCCC-CeEE-EeeCccCcEEEEEecCCCcEEEEeeCC-----CcE
Q 024372           18 PVVDLFYSPITPDGFFLVSASK-DS----SPMLRNGETG-DWIG-TFEGHKGAVWSCCLDANALFSASGSAD-----FTA   85 (268)
Q Consensus        18 ~v~~~~f~~~~~dg~~l~s~s~-d~----~i~iw~~~~~-~~~~-~~~~h~~~V~~~~~~~~~~~l~s~s~D-----~~v   85 (268)
                      .+.+..|+|  |||++||-+.. +|    +|.++|+.+| +.+. .+.   .....++|+||++.|+..+.|     ..|
T Consensus       175 ~~~~~~~S~--PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v  249 (751)
T 2xe4_A          175 DVMEVKPAP--PEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKV  249 (751)
T ss_dssp             EEEEEEECT--TTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEE
T ss_pred             EEeeeEecC--CCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEE
Confidence            455677762  49988875432 32    4889999998 6331 121   112356799999877666654     357


Q ss_pred             EEEeCCCCCe--eeee--ccCCeEEEEEECCCCCEEEEee---CCCeEEEEECCCCCCCC--eEe-cCCcccEEEEEEeC
Q 024372           86 KLWDALTGDE--KHSF--EHKHIVRACAFSEDTHLLLTGG---FEKILRIFDLNRPDAPP--REV-GNSSGSIRTVAWLH  155 (268)
Q Consensus        86 ~iw~~~~~~~--~~~~--~~~~~v~~v~~~~~~~~l~s~~---~d~~i~~~d~~~~~~~~--~~~-~~~~~~v~~~~~~~  155 (268)
                      +++++.+++.  ...+  ........+.|+||++.|+..+   ....+.++|+.++....  ..+ ....+....+.|..
T Consensus       250 ~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~  329 (751)
T 2xe4_A          250 WRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG  329 (751)
T ss_dssp             EEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET
T ss_pred             EEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee
Confidence            7888877642  2222  2234456788999999887654   34567888887643222  222 22334445555443


Q ss_pred             CCCcEEEEeeCC----CeEEEEeCCCCceEE--eecCCC--CEEEEEECCCCcEE-EE-eCCC--eEEEEeC-------C
Q 024372          156 SDQTILSSCTDS----GGVRLWDARSGKIVQ--TLETKS--PVTSAEVSRDGRYI-TT-ADGS--SVKFWDA-------N  216 (268)
Q Consensus       156 ~~~~~~~~~~~d----~~i~iwd~~~~~~~~--~~~~~~--~v~~~~~s~~g~~l-~~-~~~~--~v~~wd~-------~  216 (268)
                       ++.++.....+    ..|..+|+.+.....  .+....  .+..+.+.  +..+ ++ ..++  .|.++|+       .
T Consensus       330 -g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~dl~~~~~~~~  406 (751)
T 2xe4_A          330 -TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWTMMADSQDGVFK  406 (751)
T ss_dssp             -TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEEEECCTTTSCCC
T ss_pred             -CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEEEeccccccccc
Confidence             55554444332    367777876532222  233332  24455554  4443 33 3454  4566775       2


Q ss_pred             CceeeeEEeCCCCceeeEE------cCCCCCEEEeccCC---CeEEEEECCCCcE
Q 024372          217 HFGLVKGYNMPCNTESASL------EPKLGNIFIAGGED---MWVHVFDFHTGEQ  262 (268)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~gs~d---~~i~~wd~~~g~~  262 (268)
                      ..+.++.+..+.......+      ..+.+.++++.+..   ..++.+|+.+|+.
T Consensus       407 ~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~  461 (751)
T 2xe4_A          407 AGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR  461 (751)
T ss_dssp             TTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred             CCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence            2221333433333222333      23334565555432   4688888877763

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.65  E-value=9.2e-07  Score=78.41  Aligned_cols=186  Identities=11%  Similarity=0.147  Sum_probs=126.8

Q ss_pred             CCCcEE-EEeeCCCcEEEEeCCCCCeee--eeccCCeEEEEEE-C-CCCCEEEEee------------------CCCeEE
Q 024372           71 ANALFS-ASGSADFTAKLWDALTGDEKH--SFEHKHIVRACAF-S-EDTHLLLTGG------------------FEKILR  127 (268)
Q Consensus        71 ~~~~~l-~s~s~D~~v~iw~~~~~~~~~--~~~~~~~v~~v~~-~-~~~~~l~s~~------------------~d~~i~  127 (268)
                      +||+++ ++...+..|.+-|+.+.++..  .+........+.+ + |++++++.++                  +++.+.
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            377765 555567789999999999877  4444455777777 5 8998888873                  345788


Q ss_pred             EEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCC-------------------------------------CeE
Q 024372          128 IFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS-------------------------------------GGV  170 (268)
Q Consensus       128 ~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d-------------------------------------~~i  170 (268)
                      +.|..+.+...+..-.  +.-..++.++++..+++++...                                     +.|
T Consensus       179 vID~~t~~v~~qI~Vg--g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V  256 (595)
T 1fwx_A          179 AVDADKWEVAWQVLVS--GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV  256 (595)
T ss_dssp             EEETTTTEEEEEEEES--SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred             EEECCCCeEEEEEEeC--CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence            8888754332222211  1123356678887777776332                                     248


Q ss_pred             EEEeCCC--Cce-EEeecCCCCEEEEEECCCCcEEEEeC--CCeEEEEeCCCce------------eeeEEeCCCCceee
Q 024372          171 RLWDARS--GKI-VQTLETKSPVTSAEVSRDGRYITTAD--GSSVKFWDANHFG------------LVKGYNMPCNTESA  233 (268)
Q Consensus       171 ~iwd~~~--~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~v~~wd~~~~~------------~~~~~~~~~~~~~~  233 (268)
                      .+.|.++  ++. +..+.......++.++|||+++..++  +.+|.++|+.+.+            .+........+.-.
T Consensus       257 ~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~  336 (595)
T 1fwx_A          257 KVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHT  336 (595)
T ss_dssp             EEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEE
T ss_pred             EEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceE
Confidence            8888887  555 55665444567899999999987653  5799999998652            23334444566677


Q ss_pred             EEcCCCCCEEEeccCCCeEEEEECCC
Q 024372          234 SLEPKLGNIFIAGGEDMWVHVFDFHT  259 (268)
Q Consensus       234 ~~~~~~~~~~~~gs~d~~i~~wd~~~  259 (268)
                      .|.+ +|..+++...|+.|-+||+.+
T Consensus       337 aF~~-dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          337 AFDG-RGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             EECT-TSEEEEEETTTTEEEEEEHHH
T ss_pred             EECC-CCeEEEEEecCCcEEEEEhhH
Confidence            7887 476666778899999999876

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.58  E-value=5.8e-05  Score=61.88  Aligned_cols=223  Identities=11%  Similarity=0.046  Sum_probs=129.1

Q ss_pred             CCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCC--cEEEEeCCCCC
Q 024372           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADF--TAKLWDALTGD   94 (268)
Q Consensus        17 ~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~--~v~iw~~~~~~   94 (268)
                      ....+++|+|   +|+++++-..++.|..++... +....+.. .+....+++.+++.++++.....  .|..++..++.
T Consensus        32 ~~pegia~~~---~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~-~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~  106 (306)
T 2p4o_A           32 TFLENLASAP---DGTIFVTNHEVGEIVSITPDG-NQQIHATV-EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT  106 (306)
T ss_dssp             CCEEEEEECT---TSCEEEEETTTTEEEEECTTC-CEEEEEEC-SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC
T ss_pred             CCcceEEECC---CCCEEEEeCCCCeEEEECCCC-ceEEEEeC-CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCe
Confidence            3456788875   788777777888898888764 44433332 34678899999998766554322  46666766666


Q ss_pred             eeeeec--cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeE--------e-cCCcccEEEEEEeCCCCcEEEE
Q 024372           95 EKHSFE--HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE--------V-GNSSGSIRTVAWLHSDQTILSS  163 (268)
Q Consensus        95 ~~~~~~--~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~--------~-~~~~~~v~~~~~~~~~~~~~~~  163 (268)
                      ......  .......++..+++..+++-..++.|..+|...+......        . .........+  ++++..++++
T Consensus       107 ~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~  184 (306)
T 2p4o_A          107 VETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVS  184 (306)
T ss_dssp             EEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEE
T ss_pred             EEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEE
Confidence            543322  2223344454555555555446788888886532100000        0 0001123344  5667777777


Q ss_pred             eeCCCeEEEEeCCC-Cce--EEeecCCCCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceee--eEEeCC-CCceeeEEc
Q 024372          164 CTDSGGVRLWDARS-GKI--VQTLETKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLV--KGYNMP-CNTESASLE  236 (268)
Q Consensus       164 ~~~d~~i~iwd~~~-~~~--~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~--~~~~~~-~~~~~~~~~  236 (268)
                      -...+.|..+|+.. ++.  ...+........++++++|+++++. ..+.|..+|.. ++..  .....+ ..+..+++.
T Consensus       185 d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~  263 (306)
T 2p4o_A          185 NTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFG  263 (306)
T ss_dssp             ETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEEC
T ss_pred             eCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEe
Confidence            77778999999874 321  1112111235578999999887664 45789999975 3332  223333 345566666


Q ss_pred             ---CCCCCEEEecc
Q 024372          237 ---PKLGNIFIAGG  247 (268)
Q Consensus       237 ---~~~~~~~~~gs  247 (268)
                         ++.+.++++.+
T Consensus       264 g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          264 QTEGDCTAIYVVTN  277 (306)
T ss_dssp             CSTTTTTEEEEEEC
T ss_pred             cccCCCCEEEEECC
Confidence               43345555543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.58  E-value=0.00023  Score=66.16  Aligned_cols=231  Identities=10%  Similarity=0.129  Sum_probs=142.1

Q ss_pred             eeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEe-eCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeee
Q 024372           19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF-EGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKH   97 (268)
Q Consensus        19 v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~-~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~   97 (268)
                      |.++...+   +|.+. .++.++.+..|+..++++.... ..+...|.++...+++.+.+. ..++-+..||..++....
T Consensus       175 i~~i~~d~---~g~lw-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwig-t~~~Gl~~~~~~~~~~~~  249 (795)
T 4a2l_A          175 IASTLYRQ---GDQIY-IGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVA-TEGAGLFLINPKTKEIKN  249 (795)
T ss_dssp             CEEEEEEE---TTEEE-EEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEE-EBSSCEEEEETTTTEEEE
T ss_pred             eEEEEECC---CCCEE-EEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEE-ECCCCeEEEeCCCCeEEE
Confidence            67777653   56544 4777666888998877654322 123457888888777776553 334448889987655433


Q ss_pred             eec--------cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEe--------cCCcccEEEEEEeCCCCcEE
Q 024372           98 SFE--------HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV--------GNSSGSIRTVAWLHSDQTIL  161 (268)
Q Consensus        98 ~~~--------~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~~~  161 (268)
                      ...        ....|.++...+++.+.+ |+.+ -+.+||......  ...        ......|.++...+++ .+-
T Consensus       250 ~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~--~~~~~~~~~~~~l~~~~i~~i~~D~~g-~lW  324 (795)
T 4a2l_A          250 YLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSF--ASYSSNPVENGSLSQRSVRSIFMDSQG-GMW  324 (795)
T ss_dssp             ECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEE--EEECCCTTSTTSCSSSCEEEEEECTTS-CEE
T ss_pred             eecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeE--EEEecCCCCCCCCCCCcEEEEEEeCCc-CEE
Confidence            221        134689998888887655 4444 578888654321  111        1123468888766554 444


Q ss_pred             EEeeCCCeEEEEeCCCCceEEeec-------CCCCEEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEeC--------
Q 024372          162 SSCTDSGGVRLWDARSGKIVQTLE-------TKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNM--------  226 (268)
Q Consensus       162 ~~~~~d~~i~iwd~~~~~~~~~~~-------~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~--------  226 (268)
                       .|+.++.|..|+..++.......       ....|.++...++|++.++..++.|..||..+.. .+.+..        
T Consensus       325 -igt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~-~~~~~~~~~~~~~~  402 (795)
T 4a2l_A          325 -LGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQR-FTSYTLQEDESARG  402 (795)
T ss_dssp             -EEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCC-EEEECCC------C
T ss_pred             -EEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCc-EEEEecCCCCcccC
Confidence             34566789999976654322111       1345899999999999988888889999987543 222321        


Q ss_pred             -CCC-ceeeEEcCCCCCEEEeccCCCeEEEEECCCCcE
Q 024372          227 -PCN-TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ  262 (268)
Q Consensus       227 -~~~-~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~  262 (268)
                       +.. +.++...+ .+..+..|+.++-|.+||.++++.
T Consensus       403 l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~d~~~~~~  439 (795)
T 4a2l_A          403 IGSNNIKAVYVDE-KKSLVYIGTHAGGLSILHRNSGQV  439 (795)
T ss_dssp             CSCSCEEEEEEET-TTTEEEEEETTTEEEEEETTTCCE
T ss_pred             CCCccEEEEEEcC-CCCEEEEEeCcCceeEEeCCCCcE
Confidence             112 22333333 466466677766799999887664

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.58  E-value=6.4e-06  Score=75.23  Aligned_cols=190  Identities=11%  Similarity=0.094  Sum_probs=118.5

Q ss_pred             CCCeEEeeCCCCCeEEEeeCc---cC----------------------------cEEEEEecCCCcEEEEeeCCC-----
Q 024372           40 DSSPMLRNGETGDWIGTFEGH---KG----------------------------AVWSCCLDANALFSASGSADF-----   83 (268)
Q Consensus        40 d~~i~iw~~~~~~~~~~~~~h---~~----------------------------~V~~~~~~~~~~~l~s~s~D~-----   83 (268)
                      ++.+..+|..+|+.+-++..-   ..                            ....+++.++..+++.+..++     
T Consensus       177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~  256 (668)
T 1kv9_A          177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNR  256 (668)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCcccc
Confidence            578999999999987655421   00                            011357777777776666655     


Q ss_pred             --------------cEEEEeCCCCCeeeeeccC----------CeEEEEEECCCCC---EEEEeeCCCeEEEEECCCCCC
Q 024372           84 --------------TAKLWDALTGDEKHSFEHK----------HIVRACAFSEDTH---LLLTGGFEKILRIFDLNRPDA  136 (268)
Q Consensus        84 --------------~v~iw~~~~~~~~~~~~~~----------~~v~~v~~~~~~~---~l~s~~~d~~i~~~d~~~~~~  136 (268)
                                    .|..+|..+++.+-.+...          .+.....+..+++   .++.++.++.+.++|..+++.
T Consensus       257 ~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  336 (668)
T 1kv9_A          257 EVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL  336 (668)
T ss_dssp             HHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             CCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCE
Confidence                          3899999999987776421          2222222233554   688899999999999877654


Q ss_pred             CCeEecCC----------c-ccE------------------------EEEEEeCCCCcEEEEe-----------------
Q 024372          137 PPREVGNS----------S-GSI------------------------RTVAWLHSDQTILSSC-----------------  164 (268)
Q Consensus       137 ~~~~~~~~----------~-~~v------------------------~~~~~~~~~~~~~~~~-----------------  164 (268)
                      ........          . .++                        ..++++|+.+.+++..                 
T Consensus       337 l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~  416 (668)
T 1kv9_A          337 ISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTR  416 (668)
T ss_dssp             EEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCC
T ss_pred             eccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccc
Confidence            31110000          0 000                        0145555555443311                 


Q ss_pred             ------------------eCCCeEEEEeCCCCceEEeecCCCCEEEEEECCCC-cEEEEeCCCeEEEEeCCCceeeeEEe
Q 024372          165 ------------------TDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDG-RYITTADGSSVKFWDANHFGLVKGYN  225 (268)
Q Consensus       165 ------------------~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~~~v~~wd~~~~~~~~~~~  225 (268)
                                        ..+|.|.-||+.+++.+..++...+.....+...+ .+++++.++.++.||.++++.+..+.
T Consensus       417 ~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~  496 (668)
T 1kv9_A          417 KAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFE  496 (668)
T ss_dssp             SSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             cccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEec
Confidence                              12378999999999998776644443333333344 44455568999999999999998887


Q ss_pred             CCCC
Q 024372          226 MPCN  229 (268)
Q Consensus       226 ~~~~  229 (268)
                      .+..
T Consensus       497 ~~~~  500 (668)
T 1kv9_A          497 AQSG  500 (668)
T ss_dssp             CSSC
T ss_pred             CCCC
Confidence            7643

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.47  E-value=0.00035  Score=57.19  Aligned_cols=204  Identities=10%  Similarity=-0.011  Sum_probs=120.1

Q ss_pred             CCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCC-C-eEEE
Q 024372           51 GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFE-K-ILRI  128 (268)
Q Consensus        51 ~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d-~-~i~~  128 (268)
                      .+.+..|... .....+++++++.++++-..++.|..||... .....+........+++.++++++++.... + .+..
T Consensus        22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~   99 (306)
T 2p4o_A           22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVS   99 (306)
T ss_dssp             EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEE
Confidence            3455566433 3566788999988777776788999999765 333444455678889999999976655432 2 4666


Q ss_pred             EECCCCCCCCeEecC-CcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCce-EEee-------c---CCCCEEEEEEC
Q 024372          129 FDLNRPDAPPREVGN-SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI-VQTL-------E---TKSPVTSAEVS  196 (268)
Q Consensus       129 ~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~-~~~~-------~---~~~~v~~~~~s  196 (268)
                      +|..+++.. ..... .......++..+ +..++++....+.|..+|..+++. +...       .   .-...+.+  +
T Consensus       100 ~d~~~g~~~-~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s  175 (306)
T 2p4o_A          100 LVKSDGTVE-TLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--K  175 (306)
T ss_dssp             EECTTSCEE-EEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--E
T ss_pred             EcCCCCeEE-EEEeCCCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--C
Confidence            675544321 11111 111223334333 444555544568899999876532 2110       0   11235555  8


Q ss_pred             CCCcEEEEe--CCCeEEEEeCCC-cee--eeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcE
Q 024372          197 RDGRYITTA--DGSSVKFWDANH-FGL--VKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ  262 (268)
Q Consensus       197 ~~g~~l~~~--~~~~v~~wd~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~  262 (268)
                      |+++++..+  ..+.|..+|+.. ...  ...+.....+..+++.+ +|.++++-...+.|.++|.. |+.
T Consensus       176 ~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~-dG~l~va~~~~~~V~~~~~~-G~~  244 (306)
T 2p4o_A          176 RFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDV-EGNLYGATHIYNSVVRIAPD-RST  244 (306)
T ss_dssp             EETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBT-TCCEEEECBTTCCEEEECTT-CCE
T ss_pred             cCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECC-CCCEEEEeCCCCeEEEECCC-CCE
Confidence            888655433  467899999864 221  22222112345566666 58888887777789999974 765

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.46  E-value=0.00036  Score=60.27  Aligned_cols=236  Identities=11%  Similarity=0.064  Sum_probs=133.8

Q ss_pred             CeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCC---Cc-EEEEeCCCC
Q 024372           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD---FT-AKLWDALTG   93 (268)
Q Consensus        18 ~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D---~~-v~iw~~~~~   93 (268)
                      ...+++|+|.+.+|.+.+ +...+.|+.++..+++... +.........+++++++.++++....   .. +...+....
T Consensus       140 ~P~gvavd~~s~~g~Lyv-~D~~~~I~~id~~~g~v~~-~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~  217 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYW-VGQRDAFRHVDFVNQYVDI-KTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASG  217 (433)
T ss_dssp             CCCEEEECTTTTTCEEEE-ECBTSCEEEEETTTTEEEE-ECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred             CCceEEEccccCCCEEEE-EeCCCCEEEEECCCCEEEE-eecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCC
Confidence            345788875211355444 4333888889988776553 43344567889999999865554321   11 222222211


Q ss_pred             Ce-eeeeccCCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCCCeEec-CCcccEEEEEEeCCCCcEEEEeeCCCeE
Q 024372           94 DE-KHSFEHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVG-NSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (268)
Q Consensus        94 ~~-~~~~~~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~d~~i  170 (268)
                      .. ...+........++++| ++.+.++-..++.|+.+|..++........ .....-..+++.|++..++++-...+.|
T Consensus       218 ~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I  297 (433)
T 4hw6_A          218 FTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCI  297 (433)
T ss_dssp             TCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEE
T ss_pred             eeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEE
Confidence            11 01111222335577899 777666666778899998764432111111 1122234689999887677776666899


Q ss_pred             EEEeCC--CCce--EEeecC----------------CCCEEEEEE---------CCCCcEEEEe-CCCeEEEEeCCCcee
Q 024372          171 RLWDAR--SGKI--VQTLET----------------KSPVTSAEV---------SRDGRYITTA-DGSSVKFWDANHFGL  220 (268)
Q Consensus       171 ~iwd~~--~~~~--~~~~~~----------------~~~v~~~~~---------s~~g~~l~~~-~~~~v~~wd~~~~~~  220 (268)
                      +.+|..  +++.  ...+-.                -.....+++         .++|.+.++- ..+.|+.++.. + .
T Consensus       298 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~-G-~  375 (433)
T 4hw6_A          298 YRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPE-G-R  375 (433)
T ss_dssp             EEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTT-S-E
T ss_pred             EEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCC-C-C
Confidence            998764  3321  111110                123567999         7888777664 46789988853 3 3


Q ss_pred             eeEEeCC-------------------CCceeeEEcCCCCCEEEeccCCCeEEEEEC
Q 024372          221 VKGYNMP-------------------CNTESASLEPKLGNIFIAGGEDMWVHVFDF  257 (268)
Q Consensus       221 ~~~~~~~-------------------~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~  257 (268)
                      +.++...                   ..+..+++.+..|.++++=..+..|+.++.
T Consensus       376 v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  431 (433)
T 4hw6_A          376 VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP  431 (433)
T ss_dssp             EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence            3333221                   113455666445676666666677777664

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.46  E-value=0.00096  Score=62.02  Aligned_cols=232  Identities=11%  Similarity=0.126  Sum_probs=143.0

Q ss_pred             CCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeC-------ccCcEEEEEecCCCcEEEEeeCCCcEEEE
Q 024372           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG-------HKGAVWSCCLDANALFSASGSADFTAKLW   88 (268)
Q Consensus        16 ~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~-------h~~~V~~~~~~~~~~~l~s~s~D~~v~iw   88 (268)
                      ...|.++...+   +|.+. .|+.++-+..++..+++.......       ....|.++...+++.+.+. ..+ -+.+|
T Consensus       214 ~~~i~~i~~d~---~g~lw-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-t~~-Gl~~~  287 (795)
T 4a2l_A          214 TKQIQAILQQS---PTRIW-VATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIG-TFN-DLNIY  287 (795)
T ss_dssp             CCCEEEEEEEE---TTEEE-EEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEE-ESS-CEEEE
T ss_pred             CCeeEEEEEcC---CCCEE-EEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEE-eCC-hhheE
Confidence            45677777653   56544 466555588899887765432221       1356999998888876543 334 58889


Q ss_pred             eCCCCCeeeeec--------cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEe-------cCCcccEEEEEE
Q 024372           89 DALTGDEKHSFE--------HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV-------GNSSGSIRTVAW  153 (268)
Q Consensus        89 ~~~~~~~~~~~~--------~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~-------~~~~~~v~~~~~  153 (268)
                      +..++.......        ....|.++...+++.+- .|+.++-+..|+.....  ....       ......|.++..
T Consensus       288 ~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~--~~~~~~~~~~~~l~~~~V~~i~~  364 (795)
T 4a2l_A          288 HEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMW-LGTYFGGLNYYHPIRNR--FKNIRNIPYKNSLSDNVVSCIVE  364 (795)
T ss_dssp             ETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEE-EEESSSCEEEECGGGGS--SEEECCCTTSSSCSCSSEEEEEE
T ss_pred             cCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEE-EEECCCCeEEeCCCccc--ceEEcCCCCCCCCCCCeeEEEEE
Confidence            987665433221        22468999889888755 46666677888764322  1111       112345888876


Q ss_pred             eCCCCcEEEEeeCCCeEEEEeCCCCceEEeec---------CCCCEEEEEECCCCc-EEEEeCCCeEEEEeCCCceeeeE
Q 024372          154 LHSDQTILSSCTDSGGVRLWDARSGKIVQTLE---------TKSPVTSAEVSRDGR-YITTADGSSVKFWDANHFGLVKG  223 (268)
Q Consensus       154 ~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~---------~~~~v~~~~~s~~g~-~l~~~~~~~v~~wd~~~~~~~~~  223 (268)
                      .+++ .+-+ |+.++.|..||..+++..+...         ....|.++...++|+ +.++..++.|..+|.++.+ .+.
T Consensus       365 d~~g-~lWi-Gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~-~~~  441 (795)
T 4a2l_A          365 DKDK-NLWI-GTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQ-VEN  441 (795)
T ss_dssp             CTTS-CEEE-EESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCC-EEE
T ss_pred             CCCC-CEEE-EECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCc-EEE
Confidence            6544 4443 5666789999998776544321         124588999999999 7777777789999987654 333


Q ss_pred             EeC-----CC-CceeeEEcCCCCCEEEeccCCCeEEEEECCCCcE
Q 024372          224 YNM-----PC-NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ  262 (268)
Q Consensus       224 ~~~-----~~-~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~  262 (268)
                      +..     +. .+.++...+ .|.+.+.. .++ +++||.++++.
T Consensus       442 ~~~~~~~l~~~~v~~i~~d~-~g~lwigt-~~G-l~~~~~~~~~~  483 (795)
T 4a2l_A          442 FNQRNSQLVNENVYAILPDG-EGNLWLGT-LSA-LVRFNPEQRSF  483 (795)
T ss_dssp             ECTTTSCCSCSCEEEEEECS-SSCEEEEE-SSC-EEEEETTTTEE
T ss_pred             eecCCCCcCCCeeEEEEECC-CCCEEEEe-cCc-eeEEeCCCCeE
Confidence            332     11 223333333 46654443 344 88899876654

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.42  E-value=4.4e-05  Score=69.55  Aligned_cols=111  Identities=15%  Similarity=0.116  Sum_probs=70.0

Q ss_pred             eEEEecCCCCCcEEEEEeCCC-----------CeEEeeCCCCCeEE--EeeC-ccCcEEEEEecCCCcEEEEee-CCCcE
Q 024372           21 DLFYSPITPDGFFLVSASKDS-----------SPMLRNGETGDWIG--TFEG-HKGAVWSCCLDANALFSASGS-ADFTA   85 (268)
Q Consensus        21 ~~~f~~~~~dg~~l~s~s~d~-----------~i~iw~~~~~~~~~--~~~~-h~~~V~~~~~~~~~~~l~s~s-~D~~v   85 (268)
                      ++++.|  .+|++++.|+.+.           .+.+||..++++..  .+.. +.....++++..++.+++.|+ .+..+
T Consensus       190 ~~av~~--~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v  267 (656)
T 1k3i_A          190 AAAIEP--TSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT  267 (656)
T ss_dssp             EEEEET--TTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred             eEEEEe--cCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCce
Confidence            445543  2788888887654           46789999887542  2322 223333456778899888888 45689


Q ss_pred             EEEeCCCCCeeeee--ccCCeEEEEEECCCCCEEEEee-CC-----CeEEEEECCC
Q 024372           86 KLWDALTGDEKHSF--EHKHIVRACAFSEDTHLLLTGG-FE-----KILRIFDLNR  133 (268)
Q Consensus        86 ~iw~~~~~~~~~~~--~~~~~v~~v~~~~~~~~l~s~~-~d-----~~i~~~d~~~  133 (268)
                      .+||..++.-....  .....-.++...+++++++.|+ .+     ..+.+||..+
T Consensus       268 ~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t  323 (656)
T 1k3i_A          268 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS  323 (656)
T ss_dssp             EEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             EEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCC
Confidence            99998765422221  1111123445567899999988 44     5688888754

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.42  E-value=0.00062  Score=57.78  Aligned_cols=205  Identities=7%  Similarity=-0.129  Sum_probs=121.3

Q ss_pred             CeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCC-cEEEEeeCCCcEEEEeCCCCCee
Q 024372           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA-LFSASGSADFTAKLWDALTGDEK   96 (268)
Q Consensus        18 ~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~-~~l~s~s~D~~v~iw~~~~~~~~   96 (268)
                      ...+++|++  .++.+..+-...+.|..++...+.....+.........+++.+.+ .+.++-...+.|.+.++......
T Consensus       117 ~~~gl~~d~--~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~  194 (386)
T 3v65_B          117 NAIALDFHH--RRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK  194 (386)
T ss_dssp             CEEEEEEET--TTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCE
T ss_pred             ccEEEEEec--CCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE
Confidence            455788875  245555555666777777776554333333222334567787644 44456666778888887654433


Q ss_pred             eeecc-CCeEEEEEECCCCCEEEEee-CC-CeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEE
Q 024372           97 HSFEH-KHIVRACAFSEDTHLLLTGG-FE-KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLW  173 (268)
Q Consensus        97 ~~~~~-~~~v~~v~~~~~~~~l~s~~-~d-~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iw  173 (268)
                      ..+.. ....+.+++.|.+..|+.+. .. +.|..+++... ...............+++.+.++.++.+-...+.|..+
T Consensus       195 ~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~  273 (386)
T 3v65_B          195 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERA  273 (386)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred             EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC-CcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEE
Confidence            33322 23567888998665555443 33 67888887532 22222222233467899988888888777777899999


Q ss_pred             eCCCCceEEeec-CCCCEEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEe
Q 024372          174 DARSGKIVQTLE-TKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYN  225 (268)
Q Consensus       174 d~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~  225 (268)
                      |+........+. .......+++..+.-|++-...+.|..+|..+++.+..+.
T Consensus       274 d~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i~  326 (386)
T 3v65_B          274 NLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIR  326 (386)
T ss_dssp             CTTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             eCCCCeeEEEEECCCCCceEEEEECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence            987543332232 2234678888444334443456788888865554444443

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.41  E-value=0.00011  Score=60.51  Aligned_cols=195  Identities=12%  Similarity=0.055  Sum_probs=114.2

Q ss_pred             EEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeec--------------------cCCeEEEEEECC-CCCEEEEeeC
Q 024372           64 VWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE--------------------HKHIVRACAFSE-DTHLLLTGGF  122 (268)
Q Consensus        64 V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~--------------------~~~~v~~v~~~~-~~~~l~s~~~  122 (268)
                      -..+++.+++.++.++..++.|..|+..++.......                    .......+++.+ +++++ .+..
T Consensus        21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~-v~d~   99 (322)
T 2fp8_A           21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLY-IVDC   99 (322)
T ss_dssp             CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEE-EEET
T ss_pred             ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEE-EEEC
Confidence            3456688888766677788889999877654322110                    012467788987 66544 4444


Q ss_pred             CCeEEEEECCCCCCCCeEecC-----CcccEEEEEEeC-CCCcEEEEeeC-----------------CCeEEEEeCCCCc
Q 024372          123 EKILRIFDLNRPDAPPREVGN-----SSGSIRTVAWLH-SDQTILSSCTD-----------------SGGVRLWDARSGK  179 (268)
Q Consensus       123 d~~i~~~d~~~~~~~~~~~~~-----~~~~v~~~~~~~-~~~~~~~~~~~-----------------d~~i~iwd~~~~~  179 (268)
                      .+.+..+|...+..  ..+..     .......++..+ ++. +.++...                 ++.|..+|..+++
T Consensus       100 ~~~i~~~d~~~g~~--~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~  176 (322)
T 2fp8_A          100 YYHLSVVGSEGGHA--TQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE  176 (322)
T ss_dssp             TTEEEEECTTCEEC--EEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred             CCCEEEEeCCCCEE--EEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence            45578888653321  11110     112356678777 654 4444221                 3678899988776


Q ss_pred             eEEeecCCCCEEEEEECCCCcEE-EEe-CCCeEEEEeCCCc--eeeeEE-eCCCCceeeEEcCCCCCEEEeccC------
Q 024372          180 IVQTLETKSPVTSAEVSRDGRYI-TTA-DGSSVKFWDANHF--GLVKGY-NMPCNTESASLEPKLGNIFIAGGE------  248 (268)
Q Consensus       180 ~~~~~~~~~~v~~~~~s~~g~~l-~~~-~~~~v~~wd~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~gs~------  248 (268)
                      .......-...+.++++|+|+++ ++. ..+.|..+|+...  ...+.+ ..+. +..+++.+ +|.++++...      
T Consensus       177 ~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~-~G~l~va~~~~~~~~~  254 (322)
T 2fp8_A          177 TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNA-DGHFWVSSSEELDGNM  254 (322)
T ss_dssp             EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECT-TSCEEEEEEEETTSST
T ss_pred             EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECC-CCCEEEEecCcccccc
Confidence            53332222335689999999854 443 4578999988642  112222 2222 45556666 5787776544      


Q ss_pred             ----CCeEEEEECCCCcEEee
Q 024372          249 ----DMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       249 ----d~~i~~wd~~~g~~~~~  265 (268)
                          .+.|..+|. .|+.+..
T Consensus       255 ~~~~~~~v~~~d~-~G~~~~~  274 (322)
T 2fp8_A          255 HGRVDPKGIKFDE-FGNILEV  274 (322)
T ss_dssp             TSCEEEEEEEECT-TSCEEEE
T ss_pred             cCCCccEEEEECC-CCCEEEE
Confidence                466888886 4776654

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.36  E-value=8.6e-05  Score=66.49  Aligned_cols=160  Identities=16%  Similarity=0.131  Sum_probs=97.5

Q ss_pred             cEEEEeCCCCCeeeeeccC-----------CeEEEEEECCCCC---EEEEeeCCCeEEEEECCCCCCCCeEecCC-----
Q 024372           84 TAKLWDALTGDEKHSFEHK-----------HIVRACAFSEDTH---LLLTGGFEKILRIFDLNRPDAPPREVGNS-----  144 (268)
Q Consensus        84 ~v~iw~~~~~~~~~~~~~~-----------~~v~~v~~~~~~~---~l~s~~~d~~i~~~d~~~~~~~~~~~~~~-----  144 (268)
                      .|..+|..+++.+-.+...           .++. +....+++   .++.++.++.+..+|..+++.........     
T Consensus       273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~  351 (571)
T 2ad6_A          273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF  351 (571)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred             EEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccc
Confidence            5899999999987766421           2222 22224663   67778889999999987765432221111     


Q ss_pred             ------c-ccE--------------------------EEEEEeCCCCcEEEEee--------------------------
Q 024372          145 ------S-GSI--------------------------RTVAWLHSDQTILSSCT--------------------------  165 (268)
Q Consensus       145 ------~-~~v--------------------------~~~~~~~~~~~~~~~~~--------------------------  165 (268)
                            . .++                          ..++++|+.+.+++...                          
T Consensus       352 ~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~  431 (571)
T 2ad6_A          352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM  431 (571)
T ss_dssp             EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred             ccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccccccee
Confidence                  0 011                          12456666655544431                          


Q ss_pred             ----------CCCeEEEEeCCCCceEEeecCCCCEEEEE-ECCCCcEEEEeCCCeEEEEeCCCceeeeEEeCCCCcee--
Q 024372          166 ----------DSGGVRLWDARSGKIVQTLETKSPVTSAE-VSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTES--  232 (268)
Q Consensus       166 ----------~d~~i~iwd~~~~~~~~~~~~~~~v~~~~-~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~~~~~~~--  232 (268)
                                .++.|..||+++++.+.+++...++.... ...++.+++++.++.|+.+|.++++.+..+........  
T Consensus       432 ~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p  511 (571)
T 2ad6_A          432 YPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSP  511 (571)
T ss_dssp             EECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC
T ss_pred             ccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeee
Confidence                      34789999999999987776433332222 23455566666789999999999999988887544322  


Q ss_pred             eEEcCCCCCEEEe
Q 024372          233 ASLEPKLGNIFIA  245 (268)
Q Consensus       233 ~~~~~~~~~~~~~  245 (268)
                      ..+.. +|++++.
T Consensus       512 ~~~~~-~G~~yv~  523 (571)
T 2ad6_A          512 MTYSF-KGKQYIG  523 (571)
T ss_dssp             EEEEE-TTEEEEE
T ss_pred             EEEEE-CCEEEEE
Confidence            22223 4665553

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.36  E-value=0.00086  Score=56.92  Aligned_cols=223  Identities=8%  Similarity=-0.091  Sum_probs=135.4

Q ss_pred             CCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCC-cEEEEeeCCCcEEEEeCCCCCeeeeeccC-CeEEEEEECCC-CC
Q 024372           39 KDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA-LFSASGSADFTAKLWDALTGDEKHSFEHK-HIVRACAFSED-TH  115 (268)
Q Consensus        39 ~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~-~~l~s~s~D~~v~iw~~~~~~~~~~~~~~-~~v~~v~~~~~-~~  115 (268)
                      ....|+..+...++....+.+. .....++|.+.+ .++.+-...+.|+.++.........+... .....+++.+. ++
T Consensus        94 ~~~~I~~i~~~~~~~~~~~~~~-~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~  172 (386)
T 3v65_B           94 NRIDIRQVLPHRSEYTLLLNNL-ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDK  172 (386)
T ss_dssp             CBSCEEEECTTSCCCEEEECSC-SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTE
T ss_pred             cCccceeeccCCCcEEEEecCC-CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCe
Confidence            3456777777766554444433 456789998654 45556567788999998766543333221 23456778874 44


Q ss_pred             EEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCC-CeEEEEeCCCCceEEeec-CCCCEEEE
Q 024372          116 LLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS-GGVRLWDARSGKIVQTLE-TKSPVTSA  193 (268)
Q Consensus       116 ~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d-~~i~iwd~~~~~~~~~~~-~~~~v~~~  193 (268)
                      +.++-...+.|.+.++.... ..............+++.|.++.++.+-... +.|...++.......... .-...+.+
T Consensus       173 lY~~d~~~~~I~~~~~dg~~-~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGl  251 (386)
T 3v65_B          173 LYWTDSGTSRIEVANLDGAH-RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGL  251 (386)
T ss_dssp             EEEEETTTTEEEECBTTSCS-CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEE
T ss_pred             EEEEcCCCCeEEEEeCCCCc-eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeE
Confidence            44555566788888875322 2222222224567888888888887776555 678888886443333222 23347899


Q ss_pred             EECCCCcEE-EE-eCCCeEEEEeCCCceeeeEEeC-CCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEee
Q 024372          194 EVSRDGRYI-TT-ADGSSVKFWDANHFGLVKGYNM-PCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       194 ~~s~~g~~l-~~-~~~~~v~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~  265 (268)
                      +++|++..| .+ +..+.|..+|+........... ...+..+++.  .+.++++-...+.|..+|..+|+.+.+
T Consensus       252 avd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~--~~~ly~td~~~~~V~~~~~~~G~~~~~  324 (386)
T 3v65_B          252 TIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF--EDSLYWTDWHTKSINSANKFTGKNQEI  324 (386)
T ss_dssp             EEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCSCEE
T ss_pred             EEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE--CCEEEEeeCCCCeEEEEECCCCcceEE
Confidence            999866544 34 3457899999864322222221 1234455552  477788877888899998666665443

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.31  E-value=8.4e-05  Score=68.78  Aligned_cols=194  Identities=8%  Similarity=0.005  Sum_probs=108.4

Q ss_pred             cEEEEEec-CCCcEEEEee-CC----CcEEEEeCCCC-CeeeeeccCCeEEEEEECCCCCEEEEeeCC-----CeEEEEE
Q 024372           63 AVWSCCLD-ANALFSASGS-AD----FTAKLWDALTG-DEKHSFEHKHIVRACAFSEDTHLLLTGGFE-----KILRIFD  130 (268)
Q Consensus        63 ~V~~~~~~-~~~~~l~s~s-~D----~~v~iw~~~~~-~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d-----~~i~~~d  130 (268)
                      .+...+|+ |||+++|-+. .+    .+|+++|+.++ +.+.. ........+.|+||++.|+....+     ..|..++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~  253 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHV  253 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-cccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEE
Confidence            57788999 9999877432 22    35999999888 53211 001123457899999888776655     3577778


Q ss_pred             CCCCCCCCeEe-c-CCcccEEEEEEeCCCCcEEEEeeC--CCeEEEEeCCCCc-eE--Eee-cC-CCCEEEEEECCCCcE
Q 024372          131 LNRPDAPPREV-G-NSSGSIRTVAWLHSDQTILSSCTD--SGGVRLWDARSGK-IV--QTL-ET-KSPVTSAEVSRDGRY  201 (268)
Q Consensus       131 ~~~~~~~~~~~-~-~~~~~v~~~~~~~~~~~~~~~~~~--d~~i~iwd~~~~~-~~--~~~-~~-~~~v~~~~~s~~g~~  201 (268)
                      +.++....... . ........+.|+|++..++.+...  ...|.++|+.++. ..  ..+ .. .....++.++.++.+
T Consensus       254 lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l  333 (751)
T 2xe4_A          254 MGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHL  333 (751)
T ss_dssp             TTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEE
T ss_pred             CCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEE
Confidence            76543211121 1 222345677899999887766543  2468889998752 22  333 22 233455555555555


Q ss_pred             EEEeC-C----CeEEEEeCCCc-eeee-EEeCCCCceeeEEcCCCCCEEEeccCCCe--EEEEEC
Q 024372          202 ITTAD-G----SSVKFWDANHF-GLVK-GYNMPCNTESASLEPKLGNIFIAGGEDMW--VHVFDF  257 (268)
Q Consensus       202 l~~~~-~----~~v~~wd~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~gs~d~~--i~~wd~  257 (268)
                      ++.++ +    ..|..+|+.+. .... .+..........+....+.++++...|+.  |+++|.
T Consensus       334 ~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          334 VILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             EEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEEEEC
T ss_pred             EEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEEec
Confidence            55443 2    25777777642 1111 12222221222233323555666667764  566664

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.25  E-value=0.00077  Score=60.44  Aligned_cols=78  Identities=19%  Similarity=0.209  Sum_probs=52.2

Q ss_pred             CCeEEEEeCCCCceEEeecCCCCEEE-EEECCCCcEEEEeCCCeEEEEeCCCceeeeEEeCCCCcee--eEEcCCCCCEE
Q 024372          167 SGGVRLWDARSGKIVQTLETKSPVTS-AEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTES--ASLEPKLGNIF  243 (268)
Q Consensus       167 d~~i~iwd~~~~~~~~~~~~~~~v~~-~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  243 (268)
                      +|.|.-||+.+++.+.......++.. .....++..++++.|+.++.||.++++.+-.+..+.....  ..+.. +|+++
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~-~G~qY  543 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQ-DGEQY  543 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEE-TTEEE
T ss_pred             cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEE-CCEEE
Confidence            58899999999998876654333222 1223455555566789999999999999998887655432  33333 56654


Q ss_pred             Ee
Q 024372          244 IA  245 (268)
Q Consensus       244 ~~  245 (268)
                      ++
T Consensus       544 v~  545 (582)
T 1flg_A          544 LG  545 (582)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.24  E-value=0.0015  Score=54.60  Aligned_cols=199  Identities=8%  Similarity=-0.104  Sum_probs=117.4

Q ss_pred             eeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCC-CcEEEEeeCCCcEEEEeCCCCCeee
Q 024372           19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN-ALFSASGSADFTAKLWDALTGDEKH   97 (268)
Q Consensus        19 v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~-~~~l~s~s~D~~v~iw~~~~~~~~~   97 (268)
                      ..+++|++  .++.+..+-...+.|..++...+.....+.........+++.+. +.+..+-...+.|.+.++.......
T Consensus        75 ~~~l~~d~--~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~  152 (349)
T 3v64_C           75 AIALDFHH--RRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV  152 (349)
T ss_dssp             EEEEEEET--TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             eEEEEEec--cccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence            45777775  24555555556667777776655433333322234467788864 4455666667889999886544333


Q ss_pred             eec-cCCeEEEEEECCCCCEEE-EeeCC-CeEEEEECCCCCCCCeEe-cCCcccEEEEEEeCCCCcEEEEeeCCCeEEEE
Q 024372           98 SFE-HKHIVRACAFSEDTHLLL-TGGFE-KILRIFDLNRPDAPPREV-GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLW  173 (268)
Q Consensus        98 ~~~-~~~~v~~v~~~~~~~~l~-s~~~d-~~i~~~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iw  173 (268)
                      .+. .....+.++++|.+..++ +-... +.|..+++....  ...+ .........+++.+.++.++.+-...+.|..+
T Consensus       153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~--~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~  230 (349)
T 3v64_C          153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG--RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERA  230 (349)
T ss_dssp             EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS--CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC--cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEE
Confidence            332 223467889998555444 44444 678888875321  1222 11223457899998888888777777899999


Q ss_pred             eCCCCceEEeec-CCCCEEEEEECCCCcEEEEeCCCeEEEEeCCCceee
Q 024372          174 DARSGKIVQTLE-TKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLV  221 (268)
Q Consensus       174 d~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~  221 (268)
                      |+........+. .......+++..+.-|++-...+.|...|..+++.+
T Consensus       231 ~~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~  279 (349)
T 3v64_C          231 NLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQ  279 (349)
T ss_dssp             ETTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSC
T ss_pred             eCCCCceEEEEeCCCCCceEEEEECCEEEEecCCCCeEEEEEccCCCcc
Confidence            987543222232 223467788844333333345678888885444433

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.24  E-value=0.0019  Score=55.68  Aligned_cols=235  Identities=10%  Similarity=0.043  Sum_probs=130.0

Q ss_pred             CeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEE-EEeeCCC----cEEEEeCCC
Q 024372           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFS-ASGSADF----TAKLWDALT   92 (268)
Q Consensus        18 ~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l-~s~s~D~----~v~iw~~~~   92 (268)
                      ....++++|.  ++..|..+...+.|+.+|...++.. .+.........+++++++.++ ++...++    .+...+...
T Consensus       138 ~P~~lavdp~--~~g~Lyv~d~~~~I~~id~~~~~v~-~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g  214 (430)
T 3tc9_A          138 GAVWLSFDPK--NHNHLYLVGEQHPTRLIDFEKEYVS-TVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRES  214 (430)
T ss_dssp             CCCEEEEETT--EEEEEEEEEBTEEEEEEETTTTEEE-EEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGG
T ss_pred             CCCEEEECCC--CCCeEEEEeCCCcEEEEECCCCEEE-EEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCC
Confidence            3457788741  2334555555477888888776544 343344567889999999844 4443222    233333322


Q ss_pred             CCe-eeeeccCCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeE
Q 024372           93 GDE-KHSFEHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (268)
Q Consensus        93 ~~~-~~~~~~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i  170 (268)
                      ... ...+........++++| ++.++++-..++.|..++.................-..+++.|++..++++....+.|
T Consensus       215 ~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I  294 (430)
T 3tc9_A          215 GFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI  294 (430)
T ss_dssp             TSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred             ceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence            111 12222222345677899 7777777667788999998643221111111123456789999887677776667899


Q ss_pred             EEEeCCC--Cce--EEeecC----------------CCCEE-EEEEC--------CCCcEEEEe-CCCeEEEEeCCCcee
Q 024372          171 RLWDARS--GKI--VQTLET----------------KSPVT-SAEVS--------RDGRYITTA-DGSSVKFWDANHFGL  220 (268)
Q Consensus       171 ~iwd~~~--~~~--~~~~~~----------------~~~v~-~~~~s--------~~g~~l~~~-~~~~v~~wd~~~~~~  220 (268)
                      ..++...  ++.  +.++..                -.... .+++.        ++|.+.++- ..+.|+.+|.. +. 
T Consensus       295 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~-G~-  372 (430)
T 3tc9_A          295 LRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQ-GR-  372 (430)
T ss_dssp             EEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECTT-SE-
T ss_pred             EEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECCC-Cc-
Confidence            9987653  221  111110                01123 55653        456666664 45788888843 32 


Q ss_pred             eeEEeCC-------------------CCceeeEEcCCCCCEEEeccCCCeEEEEEC
Q 024372          221 VKGYNMP-------------------CNTESASLEPKLGNIFIAGGEDMWVHVFDF  257 (268)
Q Consensus       221 ~~~~~~~-------------------~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~  257 (268)
                      +.++...                   ..+..+++.+..+.++++-..+..|+.++.
T Consensus       373 v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  428 (430)
T 3tc9_A          373 VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY  428 (430)
T ss_dssp             EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence            3333211                   023455566544666666666777777764

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.21  E-value=0.0016  Score=53.62  Aligned_cols=219  Identities=7%  Similarity=-0.088  Sum_probs=131.9

Q ss_pred             CCeEEeeCCCCCeEEEeeCccCcEEEEEecCCC-cEEEEeeCCCcEEEEeCCC----CCeeeeecc-CCeEEEEEECCCC
Q 024372           41 SSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA-LFSASGSADFTAKLWDALT----GDEKHSFEH-KHIVRACAFSEDT  114 (268)
Q Consensus        41 ~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~-~~l~s~s~D~~v~iw~~~~----~~~~~~~~~-~~~v~~v~~~~~~  114 (268)
                      ..|+..+....+....+.. -.....++|++.+ .+..+-...+.|+.+++..    ......+.. -.....+++.+.+
T Consensus        10 ~~I~~i~~~~~~~~~~~~~-~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~   88 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH   88 (316)
T ss_dssp             SSEEEEETTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred             CeEEEEECCCcceEehhcC-CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecC
Confidence            4567777776665544432 3456788998765 4556666778999999875    222222221 1234678888644


Q ss_pred             -CEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCC-CeEEEEeCCCCceEEee-c-CCCCE
Q 024372          115 -HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS-GGVRLWDARSGKIVQTL-E-TKSPV  190 (268)
Q Consensus       115 -~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d-~~i~iwd~~~~~~~~~~-~-~~~~v  190 (268)
                       ++.++-...+.|.++++.... ..............++..|.++.++.+.... +.|...++.. +....+ . .-...
T Consensus        89 ~~ly~~d~~~~~I~~~~~~g~~-~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~~~~~~~P  166 (316)
T 1ijq_A           89 SNIYWTDSVLGTVSVADTKGVK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWP  166 (316)
T ss_dssp             TEEEEEETTTTEEEEEETTSSS-EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEECSSCSCE
T ss_pred             CeEEEEECCCCEEEEEeCCCCc-eEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEEECCCCCc
Confidence             444555667889999976322 1112222223567888888788777776543 6788888753 333333 2 22457


Q ss_pred             EEEEECCCCcEE-EEe-CCCeEEEEeCCCceeeeEE-eC---CCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEe
Q 024372          191 TSAEVSRDGRYI-TTA-DGSSVKFWDANHFGLVKGY-NM---PCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIA  264 (268)
Q Consensus       191 ~~~~~s~~g~~l-~~~-~~~~v~~wd~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~  264 (268)
                      +.++++|++..| .+. ..+.|..+|+.... .+.+ ..   ...+..+++.  .+.++++-...+.|..+|..+|+.+.
T Consensus       167 ~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~--~~~ly~~d~~~~~V~~~~~~~g~~~~  243 (316)
T 1ijq_A          167 NGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVN  243 (316)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCE
T ss_pred             eEEEEeccCCEEEEEECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEE--CCEEEEEECCCCeEEEEeCCCCcceE
Confidence            899999876554 343 45789999986422 2222 21   1234455553  47778887788899999987777554


Q ss_pred             e
Q 024372          265 I  265 (268)
Q Consensus       265 ~  265 (268)
                      +
T Consensus       244 ~  244 (316)
T 1ijq_A          244 L  244 (316)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.18  E-value=0.0024  Score=59.16  Aligned_cols=232  Identities=13%  Similarity=0.082  Sum_probs=140.6

Q ss_pred             CCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEee---------CccCcEEEEEecCCCcEEEEeeCCCcEE
Q 024372           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE---------GHKGAVWSCCLDANALFSASGSADFTAK   86 (268)
Q Consensus        16 ~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~---------~h~~~V~~~~~~~~~~~l~s~s~D~~v~   86 (268)
                      ...|.++...+   +|. |-.|+.++-+..++..++.+.....         .....|.++...+++.+. .|..++-+.
T Consensus       312 ~~~v~~i~~D~---~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~  386 (781)
T 3v9f_A          312 NASARYIFQDS---FNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW-IGTDGGGIN  386 (781)
T ss_dssp             SSCEEEEEECS---SCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEE-EEEBSSCEE
T ss_pred             CCeEEEEEEeC---CCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEE-EEeCCCcEE
Confidence            45678887763   565 5568888888888887665432210         123568999888877654 345456688


Q ss_pred             EEeCCCCCeeeee----ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEe---cCCcccEEEEEEeCCCCc
Q 024372           87 LWDALTGDEKHSF----EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV---GNSSGSIRTVAWLHSDQT  159 (268)
Q Consensus        87 iw~~~~~~~~~~~----~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~  159 (268)
                      .++..++......    .....|.++...+++.+.+ |+.++-+..+|..++.  ....   ......|.++...+++ .
T Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~--~~~~~~~~~~~~~v~~i~~d~~g-~  462 (781)
T 3v9f_A          387 VFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKK--FQIIELEKNELLDVRVFYEDKNK-K  462 (781)
T ss_dssp             EEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCE--EEECCSTTTCCCCEEEEEECTTS-E
T ss_pred             EEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCc--EEEeccCCCCCCeEEEEEECCCC-C
Confidence            8887654322211    1234688888888887655 6666668888865432  1111   1123567887765544 4


Q ss_pred             EEEEeeCCCeEEEEeCCCCceEEeecC------CCCEEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEeCC----CC
Q 024372          160 ILSSCTDSGGVRLWDARSGKIVQTLET------KSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMP----CN  229 (268)
Q Consensus       160 ~~~~~~~d~~i~iwd~~~~~~~~~~~~------~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~~----~~  229 (268)
                      +.+ ++. +.|..+|..+++.......      ...+.++...++|++.+++.++.+..+|.+..+ ++.+...    ..
T Consensus       463 lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~-~~~~~~~~~l~~~  539 (781)
T 3v9f_A          463 IWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQL-VRKFNQYEGFCSN  539 (781)
T ss_dssp             EEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCE-EEEECTTTTCSCS
T ss_pred             EEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCe-EEEccCCCCCCCC
Confidence            443 345 6799999987765433221      246899999999999888775567788876543 3344322    12


Q ss_pred             -ceeeEEcCCCCCEEEeccCCCeEEEEECCCCc
Q 024372          230 -TESASLEPKLGNIFIAGGEDMWVHVFDFHTGE  261 (268)
Q Consensus       230 -~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~  261 (268)
                       +.++...+ .|.+.+ |+.+|.|..||.++++
T Consensus       540 ~i~~i~~d~-~g~lWi-~T~~Glv~~~d~~~~~  570 (781)
T 3v9f_A          540 TINQIYRSS-KGQMWL-ATGEGLVCFPSARNFD  570 (781)
T ss_dssp             CEEEEEECT-TSCEEE-EETTEEEEESCTTTCC
T ss_pred             eeEEEEECC-CCCEEE-EECCCceEEECCCCCc
Confidence             22333333 466444 4446665888877654

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.15  E-value=0.0027  Score=54.08  Aligned_cols=223  Identities=6%  Similarity=-0.088  Sum_probs=133.8

Q ss_pred             CCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCc-EEEEeeCCCcEEEEeCCCC----Ceeeeec-cCCeEEEEEECC
Q 024372           39 KDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANAL-FSASGSADFTAKLWDALTG----DEKHSFE-HKHIVRACAFSE  112 (268)
Q Consensus        39 ~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~-~l~s~s~D~~v~iw~~~~~----~~~~~~~-~~~~v~~v~~~~  112 (268)
                      ....|+..++...+....+. ....+..++|++.+. +..+-...+.|+.+++...    .....+. .......+++.+
T Consensus        90 ~~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~  168 (400)
T 3p5b_L           90 NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW  168 (400)
T ss_dssp             ETTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEET
T ss_pred             ccceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEe
Confidence            34667777777665544343 345677899997554 4455556788888888652    1222222 223466788887


Q ss_pred             -CCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeC-CCeEEEEeCCCCceEEeecC-CCC
Q 024372          113 -DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTD-SGGVRLWDARSGKIVQTLET-KSP  189 (268)
Q Consensus       113 -~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-d~~i~iwd~~~~~~~~~~~~-~~~  189 (268)
                       .+++..+-...+.|.+.+++... ..............++..|.++.++.+-.. .+.|...++........... -..
T Consensus       169 ~~~~lY~~d~~~~~I~~~~~~g~~-~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~  247 (400)
T 3p5b_L          169 IHSNIYWTDSVLGTVSVADTKGVK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQW  247 (400)
T ss_dssp             TTTEEEEEETTTTEEEEECTTTCS-EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSC
T ss_pred             cCCceEEEECCCCeEEEEeCCCCc-eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCc
Confidence             45555555667889888876432 112222222346788888877777766433 36788888864433333332 245


Q ss_pred             EEEEEECCCCcEEE-E-eCCCeEEEEeCCCceeeeEEeC---CCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEe
Q 024372          190 VTSAEVSRDGRYIT-T-ADGSSVKFWDANHFGLVKGYNM---PCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIA  264 (268)
Q Consensus       190 v~~~~~s~~g~~l~-~-~~~~~v~~wd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~  264 (268)
                      .+.++++|++..|. + +..+.|..+|+...........   -..+..+++.  .+.++++-...+.|+.+|..+|+.+.
T Consensus       248 P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~--~~~lywtd~~~~~V~~~~~~~G~~~~  325 (400)
T 3p5b_L          248 PNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVN  325 (400)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE--TTEEEEEESSSCSEEEEESSSCCCCE
T ss_pred             eEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe--CCEEEEecCCCCeEEEEEcCCCCceE
Confidence            78999998765543 3 2457899999864322222222   1233445543  46778887777889999977776654


Q ss_pred             e
Q 024372          265 I  265 (268)
Q Consensus       265 ~  265 (268)
                      +
T Consensus       326 ~  326 (400)
T 3p5b_L          326 L  326 (400)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.14  E-value=0.0024  Score=53.30  Aligned_cols=223  Identities=7%  Similarity=-0.097  Sum_probs=135.1

Q ss_pred             CCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCC-cEEEEeeCCCcEEEEeCCCCCeeeeecc-CCeEEEEEECCC-CC
Q 024372           39 KDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA-LFSASGSADFTAKLWDALTGDEKHSFEH-KHIVRACAFSED-TH  115 (268)
Q Consensus        39 ~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~-~~l~s~s~D~~v~iw~~~~~~~~~~~~~-~~~v~~v~~~~~-~~  115 (268)
                      ....|+..+....+....+.+. .....++|++.+ .+..+-...+.|+.++.........+.. ......+++.+. ++
T Consensus        51 ~~~~I~~i~~~g~~~~~~~~~~-~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~  129 (349)
T 3v64_C           51 NRIDIRQVLPHRSEYTLLLNNL-ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDK  129 (349)
T ss_dssp             CBSCEEEECTTSCCEEEEECSC-SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTE
T ss_pred             cccceEEEeCCCCeeEEeecCC-CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCe
Confidence            3455777777655554444433 346788998655 4445655678899999876654333322 123456788874 44


Q ss_pred             EEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCC-CeEEEEeCCCCceEEeec-CCCCEEEE
Q 024372          116 LLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS-GGVRLWDARSGKIVQTLE-TKSPVTSA  193 (268)
Q Consensus       116 ~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d-~~i~iwd~~~~~~~~~~~-~~~~v~~~  193 (268)
                      +..+-...+.|.+.++.... ..............+++.|.++.++.+-... +.|...++.......... .-...+.+
T Consensus       130 ly~~d~~~~~I~~~~~dG~~-~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGl  208 (349)
T 3v64_C          130 LYWTDSGTSRIEVANLDGAH-RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGL  208 (349)
T ss_dssp             EEEEETTTTEEEEEETTSCS-CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEE
T ss_pred             EEEEcCCCCeEEEEcCCCCc-eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceE
Confidence            55555567889999976432 2222222223457888888788887776655 788888876433322222 22457899


Q ss_pred             EECCCCcEE-EEe-CCCeEEEEeCCCceeeeEEeC-CCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEee
Q 024372          194 EVSRDGRYI-TTA-DGSSVKFWDANHFGLVKGYNM-PCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       194 ~~s~~g~~l-~~~-~~~~v~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~  265 (268)
                      +++|++..| .+. ..+.|..+|+........... ...+..+++.  .+.++++-...+.|..+|-.+|+.+.+
T Consensus       209 a~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~--~~~ly~td~~~~~V~~~~~~~G~~~~~  281 (349)
T 3v64_C          209 TIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF--EDSLYWTDWHTKSINSANKFTGKNQEI  281 (349)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCSCEE
T ss_pred             EEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE--CCEEEEecCCCCeEEEEEccCCCccEE
Confidence            999866544 343 457899999864322222221 1234455552  477777877788899998656665443

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.13  E-value=0.00077  Score=58.10  Aligned_cols=151  Identities=9%  Similarity=0.033  Sum_probs=92.9

Q ss_pred             EEEEEecC-CCcEEEEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCC-C----eEEEEECCCCCCC
Q 024372           64 VWSCCLDA-NALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFE-K----ILRIFDLNRPDAP  137 (268)
Q Consensus        64 V~~~~~~~-~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d-~----~i~~~d~~~~~~~  137 (268)
                      ...++++| ++..|..+...+.|+.+|...+..............++++++++.|+.+... +    .+.+++.. +...
T Consensus       139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~~~  217 (430)
T 3tc9_A          139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SGFK  217 (430)
T ss_dssp             CCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GTSC
T ss_pred             CCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Ccee
Confidence            35678887 3444444433378888998776655554445567889999999966655542 1    34444432 2221


Q ss_pred             C-eEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEe--ecCCCCEEEEEECCCCcEE-EEe-CCCeEEE
Q 024372          138 P-REVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQT--LETKSPVTSAEVSRDGRYI-TTA-DGSSVKF  212 (268)
Q Consensus       138 ~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~--~~~~~~v~~~~~s~~g~~l-~~~-~~~~v~~  212 (268)
                      . ..... ......+++.|.++.++++-...+.|..+|...+.....  .........++++|+|++| ++. ..+.|..
T Consensus       218 ~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~  296 (430)
T 3tc9_A          218 VITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILR  296 (430)
T ss_dssp             SEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             eeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEE
Confidence            1 12111 122345677785667777766678999999987664232  2222347799999999844 443 4678888


Q ss_pred             EeCC
Q 024372          213 WDAN  216 (268)
Q Consensus       213 wd~~  216 (268)
                      ++..
T Consensus       297 ~~~d  300 (430)
T 3tc9_A          297 SDYD  300 (430)
T ss_dssp             EEEE
T ss_pred             EeCC
Confidence            7754

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.12  E-value=0.0024  Score=52.50  Aligned_cols=205  Identities=12%  Similarity=-0.080  Sum_probs=119.7

Q ss_pred             CCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC----CCeEEEeeCccCcEEEEEecCC-CcEEEEeeCCCcEEEEeC
Q 024372           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET----GDWIGTFEGHKGAVWSCCLDAN-ALFSASGSADFTAKLWDA   90 (268)
Q Consensus        16 ~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~----~~~~~~~~~h~~~V~~~~~~~~-~~~l~s~s~D~~v~iw~~   90 (268)
                      .....+++|++  .++....+-...+.|..++...    ......+...-.....+++.+. +.+.++-...+.|.+.+.
T Consensus        29 ~~~p~g~~~d~--~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~  106 (316)
T 1ijq_A           29 LRNVVALDTEV--ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT  106 (316)
T ss_dssp             CSSEEEEEEET--TTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             CCceEEEEEEe--CCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeC
Confidence            34456888885  2455555666667888887765    2222223222234567888764 445566667889999998


Q ss_pred             CCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCC--CeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCC
Q 024372           91 LTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFE--KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS  167 (268)
Q Consensus        91 ~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d--~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d  167 (268)
                      ........+. .....+.++++|.+..++.+...  +.|..+++.. ..........-.....+++.++++.++.+-...
T Consensus       107 ~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~  185 (316)
T 1ijq_A          107 KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL  185 (316)
T ss_dssp             TSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             CCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEEECCCCCceEEEEeccCCEEEEEECCC
Confidence            6544433332 22456788999865555544433  6788888753 211111112233567889998888888777777


Q ss_pred             CeEEEEeCCCCceEEeec---CCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEE
Q 024372          168 GGVRLWDARSGKIVQTLE---TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGY  224 (268)
Q Consensus       168 ~~i~iwd~~~~~~~~~~~---~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~  224 (268)
                      +.|..+|+..........   .-.....+++.. +.++.+ ...+.|..+|..+++.+..+
T Consensus       186 ~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~-~~ly~~d~~~~~V~~~~~~~g~~~~~i  245 (316)
T 1ijq_A          186 HSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNLL  245 (316)
T ss_dssp             TEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             CeEEEEecCCCceEEEeecCCccCCcEEEEEEC-CEEEEEECCCCeEEEEeCCCCcceEEE
Confidence            899999997432221112   123366788864 444444 35678888887555443333

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.12  E-value=0.0013  Score=54.78  Aligned_cols=190  Identities=8%  Similarity=0.124  Sum_probs=109.1

Q ss_pred             EEEEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEEECC----CCC---EEEEee-C--CCeEEEEECCCCCCCCeEecC-
Q 024372           75 FSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSE----DTH---LLLTGG-F--EKILRIFDLNRPDAPPREVGN-  143 (268)
Q Consensus        75 ~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~----~~~---~l~s~~-~--d~~i~~~d~~~~~~~~~~~~~-  143 (268)
                      +++.....+-+.++|+ +++.+..+.. ..++.|..-|    .++   ++++.. .  ++.+.+|++............ 
T Consensus        42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~  119 (355)
T 3amr_A           42 KLITTNKKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDP  119 (355)
T ss_dssp             EEEEEETTTEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCT
T ss_pred             EEEEEcCCCCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeecccc
Confidence            3444445678999999 7887777754 3344443333    232   223333 3  588999976321212222211 


Q ss_pred             -----Cc-ccEEEEEE--eCCCC-cEEEEeeCCCeEEEEeCC-------CCceEEeecCCCCEEEEEECCCCcE-EEEeC
Q 024372          144 -----SS-GSIRTVAW--LHSDQ-TILSSCTDSGGVRLWDAR-------SGKIVQTLETKSPVTSAEVSRDGRY-ITTAD  206 (268)
Q Consensus       144 -----~~-~~v~~~~~--~~~~~-~~~~~~~~d~~i~iwd~~-------~~~~~~~~~~~~~v~~~~~s~~g~~-l~~~~  206 (268)
                           .. .....+++  .+.++ .++.....+|.+..|++.       +.+.++++.....+..+...+.... +++-+
T Consensus       120 ~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eE  199 (355)
T 3amr_A          120 DHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEE  199 (355)
T ss_dssp             TSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEET
T ss_pred             ccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEecc
Confidence                 00 23444555  55444 345555667999999882       3356788887778999999986544 45556


Q ss_pred             CCeEEEEeCC-----CceeeeEEeCC---CCceeeEEcC-CCCC-EEEe-ccCCCeEEEEECC-CCcEEeec
Q 024372          207 GSSVKFWDAN-----HFGLVKGYNMP---CNTESASLEP-KLGN-IFIA-GGEDMWVHVFDFH-TGEQIAIT  266 (268)
Q Consensus       207 ~~~v~~wd~~-----~~~~~~~~~~~---~~~~~~~~~~-~~~~-~~~~-gs~d~~i~~wd~~-~g~~~~~~  266 (268)
                      +..|..+|.+     +...+..+...   ....-+.+.+ .+++ ++++ +-.+....+||.. +.+.+..+
T Consensus       200 d~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f  271 (355)
T 3amr_A          200 DEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF  271 (355)
T ss_dssp             TTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred             cceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence            6666666754     23445444322   2334444431 1333 4554 4467789999986 67776654

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.06  E-value=0.0034  Score=54.15  Aligned_cols=197  Identities=11%  Similarity=0.050  Sum_probs=113.3

Q ss_pred             EEEEEecCC---CcEEEEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCC---C-eEEEEECCCCCC
Q 024372           64 VWSCCLDAN---ALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFE---K-ILRIFDLNRPDA  136 (268)
Q Consensus        64 V~~~~~~~~---~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d---~-~i~~~d~~~~~~  136 (268)
                      -..++++++   +.+.++-.. +.|+.++..++..............++++++++++++-...   . .+..++......
T Consensus       141 P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~  219 (433)
T 4hw6_A          141 IWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFT  219 (433)
T ss_dssp             CCEEEECTTTTTCEEEEECBT-SCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTC
T ss_pred             CceEEEccccCCCEEEEEeCC-CCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCee
Confidence            457888884   554444333 88999998777766555544567889999999955443311   1 233333221111


Q ss_pred             CCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEee-c--CCCCEEEEEECCCCcEE-EEe-CCCeEE
Q 024372          137 PPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL-E--TKSPVTSAEVSRDGRYI-TTA-DGSSVK  211 (268)
Q Consensus       137 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~-~--~~~~v~~~~~s~~g~~l-~~~-~~~~v~  211 (268)
                      ....... ......+++.+.++.++++...++.|+.+|..+++....+ .  .......++++|+|++| ++. ..+.|+
T Consensus       220 ~~~~~~~-~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~  298 (433)
T 4hw6_A          220 ERLSLCN-ARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIY  298 (433)
T ss_dssp             CEEEEEE-CSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEE
T ss_pred             ccccccc-cCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEE
Confidence            0011111 1123446667756677766666689999999877763322 2  22224579999999844 443 457898


Q ss_pred             EEeCCC--cee--eeEEeCC----------------CCceeeEEc--------CCCCCEEEeccCCCeEEEEECCCCcEE
Q 024372          212 FWDANH--FGL--VKGYNMP----------------CNTESASLE--------PKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (268)
Q Consensus       212 ~wd~~~--~~~--~~~~~~~----------------~~~~~~~~~--------~~~~~~~~~gs~d~~i~~wd~~~g~~~  263 (268)
                      .+|...  ...  ...+...                ..+..+++.        ...|.++++=..+..|+.++. +|+..
T Consensus       299 ~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~  377 (433)
T 4hw6_A          299 RVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVT  377 (433)
T ss_dssp             EEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEE
T ss_pred             EEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEE
Confidence            877542  211  1122111                112335551        335777777777888999984 56544

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.06  E-value=0.0033  Score=51.82  Aligned_cols=204  Identities=7%  Similarity=-0.082  Sum_probs=120.4

Q ss_pred             CeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeE-EEeeCccCcEEEEEecCC-CcEEEEeeCCCcEEEEeCCCCCe
Q 024372           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWI-GTFEGHKGAVWSCCLDAN-ALFSASGSADFTAKLWDALTGDE   95 (268)
Q Consensus        18 ~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~-~~~~~h~~~V~~~~~~~~-~~~l~s~s~D~~v~iw~~~~~~~   95 (268)
                      ...+++|++  .++.+..+-...+.|..++...+... ..+...-.....+++.+. +.+..+-...+.|.+.++.....
T Consensus        36 ~~~~ld~d~--~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~  113 (318)
T 3sov_A           36 DAAAVDFVF--SHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR  113 (318)
T ss_dssp             EEEEEEEEG--GGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             ccEEEEEEe--CCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcE
Confidence            345788876  24555555566667777776654211 112212234456778764 45556666678899999865443


Q ss_pred             eeee-ccCCeEEEEEECCCCCEEEEeeC--CCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEE
Q 024372           96 KHSF-EHKHIVRACAFSEDTHLLLTGGF--EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRL  172 (268)
Q Consensus        96 ~~~~-~~~~~v~~v~~~~~~~~l~s~~~--d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~i  172 (268)
                      .... ......+.+++.|.+..++.+..  .+.|...++... .........-..-+.+++.++++.++.+-+..+.|..
T Consensus       114 ~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~  192 (318)
T 3sov_A          114 KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS-SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHK  192 (318)
T ss_dssp             EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC-SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC-CeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEE
Confidence            3332 22234678889986555555442  577888887532 2212222222345789999888888877777789999


Q ss_pred             EeCCCCceEEeec-CCCCEEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEE
Q 024372          173 WDARSGKIVQTLE-TKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGY  224 (268)
Q Consensus       173 wd~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~  224 (268)
                      +|+.......... .......+++..++-|++-...+.|..+|..+++.++.+
T Consensus       193 ~d~dG~~~~~~~~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G~~~~~i  245 (318)
T 3sov_A          193 SNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREI  245 (318)
T ss_dssp             EETTSCSCEEEECSCCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             EcCCCCceEEEecCCCCCceEEEEeCCEEEEEecCCCeEEEEECCCCCceEEE
Confidence            9987433222222 223467788876554555445678988898655444333

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.03  E-value=0.0086  Score=55.57  Aligned_cols=224  Identities=6%  Similarity=-0.096  Sum_probs=133.4

Q ss_pred             eCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCC-CcEEEEeeCCCcEEEEeCCCC----Ceeeeec-cCCeEEEEEEC
Q 024372           38 SKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN-ALFSASGSADFTAKLWDALTG----DEKHSFE-HKHIVRACAFS  111 (268)
Q Consensus        38 s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~-~~~l~s~s~D~~v~iw~~~~~----~~~~~~~-~~~~v~~v~~~  111 (268)
                      +....|+..++...+....+.+ ...+..++|.+. +.++.+-...+.|+.+++...    .....+. .......+++.
T Consensus       401 an~~~Ir~i~l~~~~~~~l~~~-~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD  479 (791)
T 3m0c_C          401 TNRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD  479 (791)
T ss_dssp             ECBSSEEEECTTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEE
T ss_pred             ccccceeEeeccCCcceeeecC-CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeee
Confidence            3445677777766655443433 445678899875 445556666788888888653    1222222 22345578888


Q ss_pred             CCCC-EEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCC-CeEEEEeCCCCceEEeecC-CC
Q 024372          112 EDTH-LLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS-GGVRLWDARSGKIVQTLET-KS  188 (268)
Q Consensus       112 ~~~~-~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d-~~i~iwd~~~~~~~~~~~~-~~  188 (268)
                      +.+. +.++-...+.|.+.++.... ..............|++.|..+.++.+-... +.|...++........+.. -.
T Consensus       480 ~~~~~LY~tD~~~~~I~v~~ldG~~-~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~  558 (791)
T 3m0c_C          480 WIHSNIYWTDSVLGTVSVADTKGVK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ  558 (791)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSSS-EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCS
T ss_pred             ecCCcEEEEecCCCeEEEEeCCCCe-EEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCC
Confidence            7664 44455567889999986432 2122222233467889888877777775443 6788888864443333332 24


Q ss_pred             CEEEEEECCCCcEE-EE-eCCCeEEEEeCCCceeeeEEeCC---CCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEE
Q 024372          189 PVTSAEVSRDGRYI-TT-ADGSSVKFWDANHFGLVKGYNMP---CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (268)
Q Consensus       189 ~v~~~~~s~~g~~l-~~-~~~~~v~~wd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~  263 (268)
                      ..+.|++++.+..| .+ .....|...|+............   ..+..+++.  .++++++-.....|+..|..+|+.+
T Consensus       559 ~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~  636 (791)
T 3m0c_C          559 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDV  636 (791)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred             CceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcce
Confidence            58899999765544 34 23568999998654332222221   233455543  3677777777888998887777655


Q ss_pred             ee
Q 024372          264 AI  265 (268)
Q Consensus       264 ~~  265 (268)
                      .+
T Consensus       637 ~~  638 (791)
T 3m0c_C          637 NL  638 (791)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.01  E-value=0.0043  Score=51.27  Aligned_cols=228  Identities=7%  Similarity=-0.029  Sum_probs=119.6

Q ss_pred             CCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEee---CccCcEEEEEecCCCcEEEEeeCCCcE-EEEeCC
Q 024372           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE---GHKGAVWSCCLDANALFSASGSADFTA-KLWDAL   91 (268)
Q Consensus        16 ~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~---~h~~~V~~~~~~~~~~~l~s~s~D~~v-~iw~~~   91 (268)
                      ...+.++.|.|    +...+ ++.++.+.. ....|+.=....   .+.+.+..+.+.+++..++.+. ++.+ +-.|--
T Consensus        79 ~~~~~~i~~~~----~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~g~v~~S~DgG  151 (327)
T 2xbg_A           79 DYRFNSVSFQG----NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITN-VGAIYRTKDSG  151 (327)
T ss_dssp             CCEEEEEEEET----TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEET-TCCEEEESSTT
T ss_pred             CccEEEEEecC----CeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeC-CccEEEEcCCC
Confidence            34678888873    33444 445553322 222243211121   2334577777766676666554 4443 333321


Q ss_pred             CCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEE
Q 024372           92 TGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR  171 (268)
Q Consensus        92 ~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~  171 (268)
                      ..-..........+..+.+.+++.+++.+...+..+..|-. +..-..........+..+.+.+++. +++.+ .+|.++
T Consensus       152 ~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g-G~tW~~~~~~~~~~~~~~~~~~~g~-~~~~~-~~G~~~  228 (327)
T 2xbg_A          152 KNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPG-QTAWEPHNRTTSRRLHNMGFTPDGR-LWMIV-NGGKIA  228 (327)
T ss_dssp             SSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTT-CSSCEEEECCSSSCEEEEEECTTSC-EEEEE-TTTEEE
T ss_pred             CCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCC-CCceeECCCCCCCccceeEECCCCC-EEEEe-CCceEE
Confidence            11112222234467889999998888776555544444431 1111111122334677788777664 44443 458887


Q ss_pred             EEeCCCCceEEeec-----CCCCEEEEEECCCCcEEEEeCCCeEEEEeCC---CceeeeEE-eCCCCceeeEEcCCCCCE
Q 024372          172 LWDARSGKIVQTLE-----TKSPVTSAEVSRDGRYITTADGSSVKFWDAN---HFGLVKGY-NMPCNTESASLEPKLGNI  242 (268)
Q Consensus       172 iwd~~~~~~~~~~~-----~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~  242 (268)
                      +.+...++....+.     ....+..+.+.|++.+++++.++.| ++...   ++..+... ..+.....+.+.+  +..
T Consensus       229 ~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~--~~~  305 (327)
T 2xbg_A          229 FSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFS--PDQ  305 (327)
T ss_dssp             EEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEE--TTE
T ss_pred             EecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEEC--CCc
Confidence            77533344333332     1234788999999888888777766 33333   23222211 1123444555543  445


Q ss_pred             EEeccCCCeEEEEE
Q 024372          243 FIAGGEDMWVHVFD  256 (268)
Q Consensus       243 ~~~gs~d~~i~~wd  256 (268)
                      +++++.++.|+-++
T Consensus       306 ~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          306 GFILGQKGILLRYV  319 (327)
T ss_dssp             EEEECSTTEEEEEC
T ss_pred             eEEEcCCceEEEEc
Confidence            66777888887775

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.95  E-value=0.00071  Score=60.82  Aligned_cols=190  Identities=11%  Similarity=0.034  Sum_probs=114.4

Q ss_pred             cEEEEeeC-CCcEEEEeC-CCCCeeeeeccCCe------------EEEEEECCCCCE----EEEeeCCCeEEEEECCCCC
Q 024372           74 LFSASGSA-DFTAKLWDA-LTGDEKHSFEHKHI------------VRACAFSEDTHL----LLTGGFEKILRIFDLNRPD  135 (268)
Q Consensus        74 ~~l~s~s~-D~~v~iw~~-~~~~~~~~~~~~~~------------v~~v~~~~~~~~----l~s~~~d~~i~~~d~~~~~  135 (268)
                      ..+..++. ++.|.-+|. .+++.+-.+.....            .+.+.+.|.+..    ++.++.|+.+.-+|..+++
T Consensus        63 g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~  142 (599)
T 1w6s_A           63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGE  142 (599)
T ss_dssp             TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCC
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCC
Confidence            34445555 788999999 89998776653321            123444333333    7778889999999988776


Q ss_pred             CCCeEecCC-c--ccEEE-EEEeCCCCcEEEEee-----CCCeEEEEeCCCCceEEeecCCCCE----------------
Q 024372          136 APPREVGNS-S--GSIRT-VAWLHSDQTILSSCT-----DSGGVRLWDARSGKIVQTLETKSPV----------------  190 (268)
Q Consensus       136 ~~~~~~~~~-~--~~v~~-~~~~~~~~~~~~~~~-----~d~~i~iwd~~~~~~~~~~~~~~~v----------------  190 (268)
                      ...+..... .  ..+.+ -...  ++.++++++     .++.|+-+|.++|+.+..+....+.                
T Consensus       143 ~~W~~~~~~~~~~~~~~ssP~v~--~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~  220 (599)
T 1w6s_A          143 TVWKVENSDIKVGSTLTIAPYVV--KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHY  220 (599)
T ss_dssp             EEEEEECCCGGGTCBCCSCCEEE--TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGG
T ss_pred             EEEeecCCCCCccceeecCCEEE--CCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccc
Confidence            543322111 0  01111 0111  234444432     2689999999999998766532211                


Q ss_pred             -----------------------EEEEECCCCcEEE-EeCC----------------CeEEEEeCCCceeeeEEeCCCC-
Q 024372          191 -----------------------TSAEVSRDGRYIT-TADG----------------SSVKFWDANHFGLVKGYNMPCN-  229 (268)
Q Consensus       191 -----------------------~~~~~s~~g~~l~-~~~~----------------~~v~~wd~~~~~~~~~~~~~~~-  229 (268)
                                             ...++.+...++. ...+                ..|..+|.++++.+-.++.... 
T Consensus       221 g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d  300 (599)
T 1w6s_A          221 GQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHD  300 (599)
T ss_dssp             CCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTC
T ss_pred             cccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCc
Confidence                                   1345555554443 3222                3789999999988877765321 


Q ss_pred             ---------ceeeEEcCCCC---CEEEeccCCCeEEEEECCCCcEEee
Q 024372          230 ---------TESASLEPKLG---NIFIAGGEDMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       230 ---------~~~~~~~~~~~---~~~~~gs~d~~i~~wd~~~g~~~~~  265 (268)
                               +........+|   ..++.++.++.+++.|.++|+++-.
T Consensus       301 ~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~  348 (599)
T 1w6s_A          301 EWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSA  348 (599)
T ss_dssp             SSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             cccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeec
Confidence                     11222211246   5677789999999999999998753

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.93  E-value=0.013  Score=54.24  Aligned_cols=234  Identities=11%  Similarity=-0.002  Sum_probs=136.3

Q ss_pred             CCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEee--------------CccCcEEEEEecCCCcEEEEeeCC
Q 024372           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE--------------GHKGAVWSCCLDANALFSASGSAD   82 (268)
Q Consensus        17 ~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~--------------~h~~~V~~~~~~~~~~~l~s~s~D   82 (268)
                      ..|.++...   ++|. |-.|+..+-+.+++..+++......              -....|.++...+++.+. .|..+
T Consensus       258 ~~i~~i~~d---~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lW-igt~~  332 (781)
T 3v9f_A          258 SYIFSIKQL---KDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIW-IGTWG  332 (781)
T ss_dssp             CCEEEEEEC---TTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEE-EEEBS
T ss_pred             ceEEEEEEC---CCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEE-EEecC
Confidence            457777765   3665 4557775677888887765432111              134578999888888654 45566


Q ss_pred             CcEEEEeCCCCCeeeeec----------cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCC--eEecCCcccEEE
Q 024372           83 FTAKLWDALTGDEKHSFE----------HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP--REVGNSSGSIRT  150 (268)
Q Consensus        83 ~~v~iw~~~~~~~~~~~~----------~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~--~~~~~~~~~v~~  150 (268)
                      +-|..++..+........          ....|.++...+++.+. .|+.++-+..||..+.....  .........|.+
T Consensus       333 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~  411 (781)
T 3v9f_A          333 GGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW-IGTDGGGINVFENGKRVAIYNKENRELLSNSVLC  411 (781)
T ss_dssp             SCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEE-EEEBSSCEEEEETTEEEEECC-----CCCSBEEE
T ss_pred             CeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEE-EEeCCCcEEEEECCCCeEEEccCCCCCCCcceEE
Confidence            778888876554322210          22458888888888754 45555567888865321100  000122356788


Q ss_pred             EEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeec---CCCCEEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEeCC
Q 024372          151 VAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE---TKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMP  227 (268)
Q Consensus       151 ~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~~  227 (268)
                      +...+++ .+.+ |+.++.|..+|.++++......   ....+.++...++|++.++.. +.|..+|..+.+........
T Consensus       412 i~~d~~g-~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~  488 (781)
T 3v9f_A          412 SLKDSEG-NLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTS  488 (781)
T ss_dssp             EEECTTS-CEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTT
T ss_pred             EEECCCC-CEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCc
Confidence            7765544 4444 4455789999998776543321   235689999999999887776 67888998764332211111


Q ss_pred             -----CC-ceeeEEcCCCCCEEEeccCCCeEEEEECCCCc
Q 024372          228 -----CN-TESASLEPKLGNIFIAGGEDMWVHVFDFHTGE  261 (268)
Q Consensus       228 -----~~-~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~  261 (268)
                           .. +..+...+ .|.+. .|+.++-++.||.++++
T Consensus       489 ~~~~~~~~i~~i~~d~-~g~lW-igt~~~Gl~~~~~~~~~  526 (781)
T 3v9f_A          489 NSQLLENFVRSIAQDS-EGRFW-IGTFGGGVGIYTPDMQL  526 (781)
T ss_dssp             TSSCSCSCEEEEEECT-TCCEE-EEESSSCEEEECTTCCE
T ss_pred             ccccccceeEEEEEcC-CCCEE-EEEcCCCEEEEeCCCCe
Confidence                 12 23333333 46644 44443337778876554

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.93  E-value=0.0076  Score=51.33  Aligned_cols=206  Identities=13%  Similarity=-0.061  Sum_probs=121.5

Q ss_pred             CCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCC----CeEEEeeCccCcEEEEEecC-CCcEEEEeeCCCcEEEEeC
Q 024372           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG----DWIGTFEGHKGAVWSCCLDA-NALFSASGSADFTAKLWDA   90 (268)
Q Consensus        16 ~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~----~~~~~~~~h~~~V~~~~~~~-~~~~l~s~s~D~~v~iw~~   90 (268)
                      ...+.+++|++  .++.+..+-...+.|..++....    .....+.........+++.+ .+.+.++-...+.|.+.++
T Consensus       111 ~~~~~~l~~d~--~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~  188 (400)
T 3p5b_L          111 LRNVVALDTEV--ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT  188 (400)
T ss_dssp             CSCEEEEEEET--TTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECT
T ss_pred             cCcceEEeeee--ccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeC
Confidence            34566888875  24445555555666766766542    22222332334567788887 4455566667788999988


Q ss_pred             CCCCeeeeec-cCCeEEEEEECCCCCEEEEeeC--CCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCC
Q 024372           91 LTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGF--EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS  167 (268)
Q Consensus        91 ~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~--d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d  167 (268)
                      ........+. .....+.+++.|.+..|+...+  .+.|...++... .........-.....+++.+.++.++.+-...
T Consensus       189 ~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~-~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~  267 (400)
T 3p5b_L          189 KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKL  267 (400)
T ss_dssp             TTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSC-SCEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             CCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCC-ccEEEEECCCCceEEEEEEeCCCEEEEEECCC
Confidence            7655444433 2234678999986555554442  367888887532 22222222224567899998888888776667


Q ss_pred             CeEEEEeCCCCceEEeecC---CCCEEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEE
Q 024372          168 GGVRLWDARSGKIVQTLET---KSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGY  224 (268)
Q Consensus       168 ~~i~iwd~~~~~~~~~~~~---~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~  224 (268)
                      +.|...|+...........   -.....+++..+.-|++-...+.|..+|..+++.+..+
T Consensus       268 ~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G~~~~~i  327 (400)
T 3p5b_L          268 HSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLL  327 (400)
T ss_dssp             TEEEEEETTSCCCEEEEECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSSCCCCEEE
T ss_pred             CEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCCCceEEE
Confidence            8999999875433222221   23356778755444444445678888886555444333

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.89  E-value=0.00071  Score=61.53  Aligned_cols=196  Identities=13%  Similarity=0.131  Sum_probs=102.6

Q ss_pred             EEEecC-CCcEEEEeeCCC-----------cEEEEeCCCCCeee--eec--cCCeEEEEEECCCCCEEEEee-CCCeEEE
Q 024372           66 SCCLDA-NALFSASGSADF-----------TAKLWDALTGDEKH--SFE--HKHIVRACAFSEDTHLLLTGG-FEKILRI  128 (268)
Q Consensus        66 ~~~~~~-~~~~l~s~s~D~-----------~v~iw~~~~~~~~~--~~~--~~~~v~~v~~~~~~~~l~s~~-~d~~i~~  128 (268)
                      .+++.+ ++++++.|+.+.           .+.+||..++.-..  ...  +......+++..++++++.|+ .+..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            445666 788888887543           57889988776322  121  222333467788999999988 4467999


Q ss_pred             EECCCCCCCC-eEecCCcccEEEEEEeCCCCcEEEEeeCC-----CeEEEEeCCCCceEEe-----ecCCCCEEEEEECC
Q 024372          129 FDLNRPDAPP-REVGNSSGSIRTVAWLHSDQTILSSCTDS-----GGVRLWDARSGKIVQT-----LETKSPVTSAEVSR  197 (268)
Q Consensus       129 ~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~d-----~~i~iwd~~~~~~~~~-----~~~~~~v~~~~~s~  197 (268)
                      ||..+.+... ........ -.+++..+++..++++|..+     +.+.+||+.+.+-...     ......-....+..
T Consensus       270 yd~~t~~W~~~~~~~~~R~-~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~  348 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQVARG-YQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS  348 (656)
T ss_dssp             EEGGGTEEEECCCCSSCCS-SCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT
T ss_pred             ecCcCCceeECCCCCcccc-ccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec
Confidence            9976432110 00111111 12334445665555544233     4699999988753332     00000000011223


Q ss_pred             CCcE-EEEe---------CCCeEEEEeCCCceeeeEEeCC---------C-CceeeEEcCCCCCEEEeccCCC-------
Q 024372          198 DGRY-ITTA---------DGSSVKFWDANHFGLVKGYNMP---------C-NTESASLEPKLGNIFIAGGEDM-------  250 (268)
Q Consensus       198 ~g~~-l~~~---------~~~~v~~wd~~~~~~~~~~~~~---------~-~~~~~~~~~~~~~~~~~gs~d~-------  250 (268)
                      +++. ++.+         ....+..||.............         . ...+..+....+++++.||.+.       
T Consensus       349 ~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~  428 (656)
T 1k3i_A          349 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDAT  428 (656)
T ss_dssp             TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCC
T ss_pred             CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcC
Confidence            3332 3332         2346788898765433222111         0 1112222233688899988543       


Q ss_pred             ----eEEEEECCCCcE
Q 024372          251 ----WVHVFDFHTGEQ  262 (268)
Q Consensus       251 ----~i~~wd~~~g~~  262 (268)
                          .|.+||..+++-
T Consensus       429 ~~~~~v~~yd~~~~~W  444 (656)
T 1k3i_A          429 TNAHIITLGEPGTSPN  444 (656)
T ss_dssp             CCEEEEECCSTTSCCE
T ss_pred             CcceEEEcCCCCCCCe
Confidence                688888776543

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.89  E-value=0.00026  Score=64.98  Aligned_cols=205  Identities=13%  Similarity=-0.066  Sum_probs=113.9

Q ss_pred             CeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC----CCeEEEeeCccCcEEEEEecCC-CcEEEEeeCCCcEEEEeCCC
Q 024372           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGET----GDWIGTFEGHKGAVWSCCLDAN-ALFSASGSADFTAKLWDALT   92 (268)
Q Consensus        18 ~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~----~~~~~~~~~h~~~V~~~~~~~~-~~~l~s~s~D~~v~iw~~~~   92 (268)
                      .+.+++|.+  .++.+..+-...+.|+.++...    ......+.........+++.+. +.++++-...+.|.+.++..
T Consensus       407 ~p~gla~d~--~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg  484 (699)
T 1n7d_A          407 NVVALDTEV--ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  484 (699)
T ss_dssp             TCCCCEEET--TTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSS
T ss_pred             ceEEEcccc--ccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCC
Confidence            345778875  2344444445567787777654    1211112111122345677743 44455555678899999865


Q ss_pred             CCeeeeecc-CCeEEEEEECCCCCEEEEeeC-C-CeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCe
Q 024372           93 GDEKHSFEH-KHIVRACAFSEDTHLLLTGGF-E-KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG  169 (268)
Q Consensus        93 ~~~~~~~~~-~~~v~~v~~~~~~~~l~s~~~-d-~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~  169 (268)
                      ......+.. ....+.++++|.+..|+.+.. . +.|..+++.... ..............|++.+.++.++.+-...+.
T Consensus       485 ~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~  563 (699)
T 1n7d_A          485 VKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS  563 (699)
T ss_dssp             CCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCEESCSSCSSCCCEEECTTTCCEEEEETTTTE
T ss_pred             CceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeEEEeCCCCCccEEEEeccCCEEEEEecCCCe
Confidence            544333322 233567788886554444432 2 677777764322 111111112234568888888888777777789


Q ss_pred             EEEEeCCCCceEEeecC---CCCEEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEe
Q 024372          170 VRLWDARSGKIVQTLET---KSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYN  225 (268)
Q Consensus       170 i~iwd~~~~~~~~~~~~---~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~  225 (268)
                      |..+|+........+..   ......+++..+..|++....+.|..+|..+++.++.+.
T Consensus       564 I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~~i~  622 (699)
T 1n7d_A          564 ISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLA  622 (699)
T ss_dssp             EEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred             EEEEccCCCceEEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCceEEee
Confidence            99999864332222221   122345666666444444456789999987666555543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.87  E-value=0.0077  Score=49.60  Aligned_cols=222  Identities=8%  Similarity=-0.099  Sum_probs=128.3

Q ss_pred             CCCeEEeeCCCCC--eEEEeeCccCcEEEEEecCC-CcEEEEeeCCCcEEEEeCCCCCeee-eec-cCCeEEEEEECC-C
Q 024372           40 DSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDAN-ALFSASGSADFTAKLWDALTGDEKH-SFE-HKHIVRACAFSE-D  113 (268)
Q Consensus        40 d~~i~iw~~~~~~--~~~~~~~h~~~V~~~~~~~~-~~~l~s~s~D~~v~iw~~~~~~~~~-~~~-~~~~v~~v~~~~-~  113 (268)
                      ...|+..++....  ....+.+ ......+.|.+. +.+..+-...+.|+.++........ .+. .-.....+++.+ .
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~~-~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~   90 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVGG-LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG   90 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEEE-EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTT
T ss_pred             cCeEEEEECCCCceEEEEEecC-CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCC
Confidence            3456666665542  2212222 234557888875 4455566667889889887653211 111 112345677886 4


Q ss_pred             CCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEee-CCCeEEEEeCCCCceEEeec-CCCCEE
Q 024372          114 THLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT-DSGGVRLWDARSGKIVQTLE-TKSPVT  191 (268)
Q Consensus       114 ~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~-~~~~v~  191 (268)
                      +++..+-...+.|.+++++... ..............++..|.++.++.+-. ..+.|...++.......... .-...+
T Consensus        91 g~ly~~d~~~~~I~~~~~dG~~-~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pn  169 (318)
T 3sov_A           91 EKLYWTDSETNRIEVSNLDGSL-RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPN  169 (318)
T ss_dssp             TEEEEEETTTTEEEEEETTSCS-CEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEE
T ss_pred             CeEEEEECCCCEEEEEECCCCc-EEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCcc
Confidence            4555555567889999976422 21222222334577888887777776643 24678888876332222222 224578


Q ss_pred             EEEECCCCcEE-EEe-CCCeEEEEeCCCceeeeEEe-CCCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEee
Q 024372          192 SAEVSRDGRYI-TTA-DGSSVKFWDANHFGLVKGYN-MPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       192 ~~~~s~~g~~l-~~~-~~~~v~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~  265 (268)
                      .++++|++..| .+- ..+.|..+|+.......... ....+..+++.  .+.++++-...+.|..+|..+|+.+.+
T Consensus       170 glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~--~~~lywtd~~~~~V~~~~~~~G~~~~~  244 (318)
T 3sov_A          170 GLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF--EDILYWTDWSTHSILACNKYTGEGLRE  244 (318)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE--TTEEEEEETTTTEEEEEETTTCCSCEE
T ss_pred             EEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe--CCEEEEEecCCCeEEEEECCCCCceEE
Confidence            99999965544 443 45789999986422211112 11233445554  367777877788999999877775443

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.86  E-value=0.0077  Score=52.63  Aligned_cols=198  Identities=10%  Similarity=0.008  Sum_probs=115.2

Q ss_pred             EEEEEecCC-Cc-EEEEeeCCCcEEEEeCCCCCeeeeeccC----CeEEEEEE-------CCCCCEEEEeeCCC------
Q 024372           64 VWSCCLDAN-AL-FSASGSADFTAKLWDALTGDEKHSFEHK----HIVRACAF-------SEDTHLLLTGGFEK------  124 (268)
Q Consensus        64 V~~~~~~~~-~~-~l~s~s~D~~v~iw~~~~~~~~~~~~~~----~~v~~v~~-------~~~~~~l~s~~~d~------  124 (268)
                      -..++|+|. .. ++++-...+.|++.|..++.........    .....++|       +++++.|+.+...+      
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~  220 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES  220 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence            457888883 43 4444444467888898877665544322    24788999       99999666665543      


Q ss_pred             -eEEEEECCC-CCCCC----eEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCC-------CCce-----------
Q 024372          125 -ILRIFDLNR-PDAPP----REVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR-------SGKI-----------  180 (268)
Q Consensus       125 -~i~~~d~~~-~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~-------~~~~-----------  180 (268)
                       .+.+++-.. +....    +....-. ....++..|.++.++++....+.|..+|+.       ++..           
T Consensus       221 ~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~  299 (496)
T 3kya_A          221 PSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT  299 (496)
T ss_dssp             EEEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred             ceEEEEecCCCCceeecccceeeccCC-CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence             255665322 12210    1111111 224567778778888887777899999987       5543           


Q ss_pred             ---EEeecCCCCEEEEEECCCCcEE-EE-eCCCeEEEEeC--CCcee--eeEEeCC----------------CCceeeEE
Q 024372          181 ---VQTLETKSPVTSAEVSRDGRYI-TT-ADGSSVKFWDA--NHFGL--VKGYNMP----------------CNTESASL  235 (268)
Q Consensus       181 ---~~~~~~~~~v~~~~~s~~g~~l-~~-~~~~~v~~wd~--~~~~~--~~~~~~~----------------~~~~~~~~  235 (268)
                         +...........++++|+|++| ++ .....|+.+|.  .....  ..++...                ..+....+
T Consensus       300 ~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~  379 (496)
T 3kya_A          300 FKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVF  379 (496)
T ss_dssp             EEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEE
T ss_pred             cceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEE
Confidence               2223333446799999999843 33 34678888654  32211  0122110                01221223


Q ss_pred             cC-------CCCCEEEeccCCCeEEEEECCCCcEE
Q 024372          236 EP-------KLGNIFIAGGEDMWVHVFDFHTGEQI  263 (268)
Q Consensus       236 ~~-------~~~~~~~~gs~d~~i~~wd~~~g~~~  263 (268)
                      ..       ..+.++++=..+..|+.++ .+|...
T Consensus       380 vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v~  413 (496)
T 3kya_A          380 VKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIVS  413 (496)
T ss_dssp             EECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBEE
T ss_pred             EccccccccCCCeEEEEECCCCEEEEEe-CCCCEE
Confidence            22       3467777777888999998 467543

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.85  E-value=0.00027  Score=64.85  Aligned_cols=224  Identities=6%  Similarity=-0.104  Sum_probs=124.0

Q ss_pred             CCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEE-EEeeCCCcEEEEeCCC----CCeeeeecc-CCeEEEEEECC
Q 024372           39 KDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFS-ASGSADFTAKLWDALT----GDEKHSFEH-KHIVRACAFSE  112 (268)
Q Consensus        39 ~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l-~s~s~D~~v~iw~~~~----~~~~~~~~~-~~~v~~v~~~~  112 (268)
                      ....|+..+....+....+... ..+..++|.+.+..| ++-...+.|+.+++..    ......+.. ......+++.+
T Consensus       384 ~~~~I~~id~~~~~~~~~~~~~-~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~  462 (699)
T 1n7d_A          384 NRHEVRKMTLDRSEYTSLIPNL-RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW  462 (699)
T ss_dssp             CTTC-CEECTTSCCEECCSCCC-TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCC
T ss_pred             CccceEEEeCCCCcceeeeccC-cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEe
Confidence            3456777777666655444332 345567888765544 4445668899888865    222222211 11234577775


Q ss_pred             C-CCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCC-CeEEEEeCCCCceEEeec-CCCC
Q 024372          113 D-THLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS-GGVRLWDARSGKIVQTLE-TKSP  189 (268)
Q Consensus       113 ~-~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d-~~i~iwd~~~~~~~~~~~-~~~~  189 (268)
                      . ++++++-...+.|.++++.... ..............+++.|.++.++.+-... +.|...++........+. .-..
T Consensus       463 ~~g~LY~tD~~~~~I~v~d~dg~~-~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~  541 (699)
T 1n7d_A          463 IHSNIYWTDSVLGTVSVADTKGVK-RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQW  541 (699)
T ss_dssp             SSSBCEECCTTTSCEEEEBSSSCC-EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSS
T ss_pred             eCCcEEEEeccCCeEEEEecCCCc-eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCC
Confidence            4 4444554566788888875322 1111111112345677777667666654332 577777765322211121 1234


Q ss_pred             EEEEEECCCCc-EEEEe-CCCeEEEEeCCCceeeeEEeC---CCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEe
Q 024372          190 VTSAEVSRDGR-YITTA-DGSSVKFWDANHFGLVKGYNM---PCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIA  264 (268)
Q Consensus       190 v~~~~~s~~g~-~l~~~-~~~~v~~wd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~  264 (268)
                      .+.|+++|++. +..+. ..+.|..+|+...........   -..+..+++..  +.++++....+.|..+|..+|+.+.
T Consensus       542 PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~--~~lywtd~~~~~V~~~d~~~G~~~~  619 (699)
T 1n7d_A          542 PNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE--DKVFWTDIINEAIFSANRLTGSDVN  619 (699)
T ss_dssp             CCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEET--TEEEEECSTTTCEEEEETTTEEEEE
T ss_pred             ccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEEC--CEEEEEeCCCCeEEEEEccCCCceE
Confidence            67899998754 43443 457899999864322211111   12234455543  5777787778889999988888776


Q ss_pred             ec
Q 024372          265 IT  266 (268)
Q Consensus       265 ~~  266 (268)
                      ++
T Consensus       620 ~i  621 (699)
T 1n7d_A          620 LL  621 (699)
T ss_dssp             CC
T ss_pred             Ee
Confidence            54

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.84  E-value=0.005  Score=49.85  Aligned_cols=225  Identities=13%  Similarity=0.127  Sum_probs=109.1

Q ss_pred             CCcEEEEEe-CC-----CCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCC-----CcEEEEeCCCCC---e
Q 024372           30 DGFFLVSAS-KD-----SSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD-----FTAKLWDALTGD---E   95 (268)
Q Consensus        30 dg~~l~s~s-~d-----~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D-----~~v~iw~~~~~~---~   95 (268)
                      ++.+++.|+ .+     ..+.++|..++++...-..........+...++.+++.|+.+     ..+.++|..+..   -
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W   93 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVW   93 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCC
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCee
Confidence            445666666 33     356778988887553211111111111112356667777755     468888987765   2


Q ss_pred             eeee--ccCCe-EEEEEECCCCCEEEEeeCC-----CeEEEEECCCCCCCCe-EecCCcccEEEEEEeCCCCcEEEEeeC
Q 024372           96 KHSF--EHKHI-VRACAFSEDTHLLLTGGFE-----KILRIFDLNRPDAPPR-EVGNSSGSIRTVAWLHSDQTILSSCTD  166 (268)
Q Consensus        96 ~~~~--~~~~~-v~~v~~~~~~~~l~s~~~d-----~~i~~~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~  166 (268)
                      ....  ..+.. -..+.+  ++++++.|+.+     ..+.+||+.+.+.... ........-..+. . ++ .+++.|+.
T Consensus        94 ~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~-~iyv~GG~  168 (301)
T 2vpj_A           94 YSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV-A-SG-VIYCLGGY  168 (301)
T ss_dssp             EEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE-E-TT-EEEEECCB
T ss_pred             EECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE-E-CC-EEEEECCC
Confidence            2221  11111 112222  56777777654     3577888764321111 1111111111222 2 33 44444433


Q ss_pred             C-----CeEEEEeCCCCceEEe--ecCCCCEEEEEECCCCcEEE-EeC-----CCeEEEEeCCCceeeeEEeCCCCc--e
Q 024372          167 S-----GGVRLWDARSGKIVQT--LETKSPVTSAEVSRDGRYIT-TAD-----GSSVKFWDANHFGLVKGYNMPCNT--E  231 (268)
Q Consensus       167 d-----~~i~iwd~~~~~~~~~--~~~~~~v~~~~~s~~g~~l~-~~~-----~~~v~~wd~~~~~~~~~~~~~~~~--~  231 (268)
                      +     +.+.+||+.+.+=...  +.....-.++... ++++++ ++.     -..+.+||+++..-...-..+...  .
T Consensus       169 ~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~  247 (301)
T 2vpj_A          169 DGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL-NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYV  247 (301)
T ss_dssp             CSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSC
T ss_pred             CCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE-CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccce
Confidence            2     4688999987653322  2111111122222 455544 443     246889999765433222222221  1


Q ss_pred             eeEEcCCCCCEEEeccCC-----CeEEEEECCCCcE
Q 024372          232 SASLEPKLGNIFIAGGED-----MWVHVFDFHTGEQ  262 (268)
Q Consensus       232 ~~~~~~~~~~~~~~gs~d-----~~i~~wd~~~g~~  262 (268)
                      .....  ++++++.||.+     ..|.+||.++++-
T Consensus       248 ~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  281 (301)
T 2vpj_A          248 GATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDSW  281 (301)
T ss_dssp             EEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTEE
T ss_pred             eEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCeE
Confidence            22222  57888888765     4688999877653

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.83  E-value=0.0097  Score=49.46  Aligned_cols=196  Identities=15%  Similarity=0.260  Sum_probs=120.1

Q ss_pred             ecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecC----CCc---EE-EEeeC--CCcEEEEeC--CC
Q 024372           25 SPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDA----NAL---FS-ASGSA--DFTAKLWDA--LT   92 (268)
Q Consensus        25 ~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~----~~~---~l-~s~s~--D~~v~iw~~--~~   92 (268)
                      +|..|...+++.....+-+.++|. +|+.++.+..  +.+..+.+-|    .+.   ++ +|.-.  +++|.++++  .+
T Consensus        34 ~~~dp~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~  110 (355)
T 3amr_A           34 DPKTPQNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN  110 (355)
T ss_dssp             CSSCGGGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTT
T ss_pred             CCCCCCccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCC
Confidence            465566677777777888999999 8999988864  4555555444    222   23 33334  589999966  34


Q ss_pred             CCeeeeecc-------C-CeEEEEEE--CCC-CC-EEEEeeCCCeEEEEECCC---CCC---CCeEecCCcccEEEEEEe
Q 024372           93 GDEKHSFEH-------K-HIVRACAF--SED-TH-LLLTGGFEKILRIFDLNR---PDA---PPREVGNSSGSIRTVAWL  154 (268)
Q Consensus        93 ~~~~~~~~~-------~-~~v~~v~~--~~~-~~-~l~s~~~d~~i~~~d~~~---~~~---~~~~~~~~~~~v~~~~~~  154 (268)
                      +. +..+..       . ..+..+++  +|. ++ +++....++.+..|++..   +..   ..+.+.. .+.+..+...
T Consensus       111 ~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvD  188 (355)
T 3amr_A          111 GT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAAD  188 (355)
T ss_dssp             CC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEE
T ss_pred             Cc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEc
Confidence            33 333311       1 34455666  674 44 566777889998888732   111   1223322 2345555666


Q ss_pred             CCCCcEEEEeeCCCeEEEEeCC-----CCceEEeecC---CCCEEEEEE--CCCCc-EEE-Ee-CCCeEEEEeCC-Ccee
Q 024372          155 HSDQTILSSCTDSGGVRLWDAR-----SGKIVQTLET---KSPVTSAEV--SRDGR-YIT-TA-DGSSVKFWDAN-HFGL  220 (268)
Q Consensus       155 ~~~~~~~~~~~~d~~i~iwd~~-----~~~~~~~~~~---~~~v~~~~~--s~~g~-~l~-~~-~~~~v~~wd~~-~~~~  220 (268)
                      +..+.++++ -++..|..+|.+     +++.+..+..   ...+..+++  .++++ +|+ ++ .+....+||.+ +.+.
T Consensus       189 d~~g~Lyv~-eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~  267 (355)
T 3amr_A          189 DEYGRLYIA-EEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKY  267 (355)
T ss_dssp             TTTTEEEEE-ETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCE
T ss_pred             CCCCeEEEe-cccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcE
Confidence            666666654 566667777755     3456655532   245788887  56665 554 44 35799999996 6677


Q ss_pred             eeEEeC
Q 024372          221 VKGYNM  226 (268)
Q Consensus       221 ~~~~~~  226 (268)
                      +..|..
T Consensus       268 vg~f~I  273 (355)
T 3amr_A          268 VADFRI  273 (355)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            777754

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.77  E-value=0.021  Score=51.60  Aligned_cols=223  Identities=9%  Similarity=-0.090  Sum_probs=134.7

Q ss_pred             CCCCeEEeeCCCCCeEEEee-CccCcEEEEEecCCCc-EEEEeeCCCcEEEEeCCCCCeeeeeccC-CeEEEEEECCCCC
Q 024372           39 KDSSPMLRNGETGDWIGTFE-GHKGAVWSCCLDANAL-FSASGSADFTAKLWDALTGDEKHSFEHK-HIVRACAFSEDTH  115 (268)
Q Consensus        39 ~d~~i~iw~~~~~~~~~~~~-~h~~~V~~~~~~~~~~-~l~s~s~D~~v~iw~~~~~~~~~~~~~~-~~v~~v~~~~~~~  115 (268)
                      ....|+..++...+....+. ..-..+..++|++.+. +..+-..++.|+.+++........+... .....+++.+.+.
T Consensus        13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~   92 (628)
T 4a0p_A           13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGK   92 (628)
T ss_dssp             ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTT
T ss_pred             eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCC
Confidence            45667777776554333222 1224567899997654 4456667888998888665443333322 2355788877544


Q ss_pred             -EEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeC-CCeEEEEeCCCCceEEeecCCCCEEEE
Q 024372          116 -LLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTD-SGGVRLWDARSGKIVQTLETKSPVTSA  193 (268)
Q Consensus       116 -~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-d~~i~iwd~~~~~~~~~~~~~~~v~~~  193 (268)
                       +..+-...+.|.+.++.... ........-.....++..|..+.++.+-.. .+.|...++...........-...+.+
T Consensus        93 ~LY~tD~~~~~I~v~~~dG~~-~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~Gl  171 (628)
T 4a0p_A           93 NLYWADTGTNRIEVSKLDGQH-RQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGL  171 (628)
T ss_dssp             EEEEEETTTTEEEEEETTSTT-CEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEE
T ss_pred             EEEEEECCCCEEEEEecCCCc-EEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceE
Confidence             44455566788888876432 212221222345788888877777776422 467888887654433333444568899


Q ss_pred             EECCCCcEEE-E-eCCCeEEEEeCCCceeeeEEe-CCCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEee
Q 024372          194 EVSRDGRYIT-T-ADGSSVKFWDANHFGLVKGYN-MPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       194 ~~s~~g~~l~-~-~~~~~v~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~  265 (268)
                      ++++++..|. + ...+.|...|+..... +.+. ....+..+++..  +.++++-...+.|...|-.+|+.+.+
T Consensus       172 alD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~--~~ly~tD~~~~~I~~~dk~tg~~~~~  243 (628)
T 4a0p_A          172 TIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ--DYIYWTDWSRRSIERANKTSGQNRTI  243 (628)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET--TEEEEEETTTTEEEEEETTTCCSCEE
T ss_pred             EEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC--CEEEEecCCCCEEEEEECCCCCceEE
Confidence            9999765543 3 3457899999865322 2222 222345555543  67777777788899999777765433

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.75  E-value=0.012  Score=48.44  Aligned_cols=188  Identities=10%  Similarity=0.061  Sum_probs=105.8

Q ss_pred             CCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC-eEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeC--CCC
Q 024372           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD-WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA--LTG   93 (268)
Q Consensus        17 ~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~-~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~--~~~   93 (268)
                      +.+..+.+.+   ++..++.+ .++.+. .....|+ +......+...+..+.+.+++.+++.+...+..+-+|-  .+-
T Consensus       122 ~~~~~i~~~~---~~~~~~~~-~~g~v~-~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW  196 (327)
T 2xbg_A          122 GSPRLIKALG---NGSAEMIT-NVGAIY-RTKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAW  196 (327)
T ss_dssp             SCEEEEEEEE---TTEEEEEE-TTCCEE-EESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSC
T ss_pred             CCeEEEEEEC---CCCEEEEe-CCccEE-EEcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCce
Confidence            4466777753   45555544 455442 1222243 44444456677899999998888776654444444553  111


Q ss_pred             CeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCC-CCeEec--CCcccEEEEEEeCCCCcEEEEeeCCCeE
Q 024372           94 DEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDA-PPREVG--NSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (268)
Q Consensus        94 ~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~-~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~d~~i  170 (268)
                      ... .......+..+.+.+++.+++. +.++.+.+.+...+.. ......  .....+..+.+.+++ .+++++. ++.|
T Consensus       197 ~~~-~~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~-~~~~~g~-~g~i  272 (327)
T 2xbg_A          197 EPH-NRTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPN-EVWLAGG-AGAL  272 (327)
T ss_dssp             EEE-ECCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSS-CEEEEES-TTCE
T ss_pred             eEC-CCCCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCC-EEEEEeC-CCeE
Confidence            222 2234456778888898876654 4567776663211110 000001  112247788887654 4555554 4766


Q ss_pred             EEEeCCCCceEEeec----CCCCEEEEEECCCCcEEEEeCCCeEEEEe
Q 024372          171 RLWDARSGKIVQTLE----TKSPVTSAEVSRDGRYITTADGSSVKFWD  214 (268)
Q Consensus       171 ~iwd~~~~~~~~~~~----~~~~v~~~~~s~~g~~l~~~~~~~v~~wd  214 (268)
                       ++....|+.-..+.    ....+..+.+.+++++++.+.++.|.-++
T Consensus       273 -~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          273 -LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYV  319 (327)
T ss_dssp             -EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEECSTTEEEEEC
T ss_pred             -EEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEcCCceEEEEc
Confidence             45555565544443    13457788888788888888888776655

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.72  E-value=0.02  Score=49.97  Aligned_cols=240  Identities=6%  Similarity=-0.035  Sum_probs=134.6

Q ss_pred             eeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeC---ccCcEEEEEe-------cCCCcEEEEeeCCC-----
Q 024372           19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG---HKGAVWSCCL-------DANALFSASGSADF-----   83 (268)
Q Consensus        19 v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~---h~~~V~~~~~-------~~~~~~l~s~s~D~-----   83 (268)
                      ...|+|.|. .++++.++.-..+.|++.|..++.....+..   .......++|       ++++.+|..+...+     
T Consensus       141 p~~la~dp~-~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          141 NGRLAFDPL-NKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             EEEEEEETT-EEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCEEEEccC-CCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            457888852 1344555444446677888887765543332   1234788999       99998554444332     


Q ss_pred             --cEEEEeCCC-CCee-----eeeccCCeEEEEEECC-CCCEEEEeeCCCeEEEEECC-------CCCC------C----
Q 024372           84 --TAKLWDALT-GDEK-----HSFEHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLN-------RPDA------P----  137 (268)
Q Consensus        84 --~v~iw~~~~-~~~~-----~~~~~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~-------~~~~------~----  137 (268)
                        .|.+.+... +...     ..+........++++| ++.++++-..++.|..+|+.       ++..      .    
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~  299 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT  299 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred             CceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence              255665433 1111     1221111234567899 55666666677889999986       4432      0    


Q ss_pred             C-eEe-cCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeC--CCCce--EEee----cCC------------CCEE-EEE
Q 024372          138 P-REV-GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA--RSGKI--VQTL----ETK------------SPVT-SAE  194 (268)
Q Consensus       138 ~-~~~-~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~--~~~~~--~~~~----~~~------------~~v~-~~~  194 (268)
                      . ... ......-..+++.|++..++++-+..+.|+.+|.  .++..  ..++    ...            .... .++
T Consensus       300 ~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~  379 (496)
T 3kya_A          300 FKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVF  379 (496)
T ss_dssp             EEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEE
T ss_pred             cceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEE
Confidence            0 111 1122345789999988766666666688998654  43321  0111    000            1234 455


Q ss_pred             EC-------CCCcEEEEe-CCCeEEEEeCCCceeeeEEeCC-------------------------CCceeeEEcCCCCC
Q 024372          195 VS-------RDGRYITTA-DGSSVKFWDANHFGLVKGYNMP-------------------------CNTESASLEPKLGN  241 (268)
Q Consensus       195 ~s-------~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~  241 (268)
                      ..       ++|.++++- .+..||.++.. + .+.++...                         ..+..+++.+..+.
T Consensus       380 vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~-G-~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~  457 (496)
T 3kya_A          380 VKNPDYTGEEEYDFYFVDRLNFCVRKVTPE-G-IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEM  457 (496)
T ss_dssp             EECTTCCSSCCEEEEEEEGGGTEEEEECTT-C-BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTE
T ss_pred             EccccccccCCCeEEEEECCCCEEEEEeCC-C-CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCE
Confidence            64       567666664 56889999843 3 34444321                         01234555553377


Q ss_pred             EEEeccCCCeEEEEECCCCc
Q 024372          242 IFIAGGEDMWVHVFDFHTGE  261 (268)
Q Consensus       242 ~~~~gs~d~~i~~wd~~~g~  261 (268)
                      ++++=+.+..|+.++++...
T Consensus       458 lyVaD~~N~rIrki~~~~~~  477 (496)
T 3kya_A          458 FYVHDQVGHTIRTISMEQEE  477 (496)
T ss_dssp             EEEEETTTTEEEEEEECCCC
T ss_pred             EEEEeCCCCEEEEEECCCCc
Confidence            77777778889888876433

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.62  E-value=0.043  Score=50.97  Aligned_cols=201  Identities=12%  Similarity=-0.068  Sum_probs=117.4

Q ss_pred             CCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCC----CeEEEeeCccCcEEEEEecCCC-cEEEEeeCCCcEEEEeC
Q 024372           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG----DWIGTFEGHKGAVWSCCLDANA-LFSASGSADFTAKLWDA   90 (268)
Q Consensus        16 ~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~----~~~~~~~~h~~~V~~~~~~~~~-~~l~s~s~D~~v~iw~~   90 (268)
                      ...+.+++|.+.  ++.+..+-...+.|+.+++...    +....+.........+++.+.+ .+.++-...+.|.+.++
T Consensus       423 ~~~~~gl~~d~~--~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~l  500 (791)
T 3m0c_C          423 LRNVVALDTEVA--SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT  500 (791)
T ss_dssp             CSSEEEEEEETT--TTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             CCceEEEeeccc--CCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeC
Confidence            344567888752  4555555555666766666532    2222333233455678888766 44556667789999998


Q ss_pred             CCCCeeeeec-cCCeEEEEEECCCCCEEEEeeC--CCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCC
Q 024372           91 LTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGF--EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS  167 (268)
Q Consensus        91 ~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~--d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d  167 (268)
                      ........+. .....+.|++.|....|+.+.+  .+.|...++... ...............|++.+.++.|+.+-...
T Consensus       501 dG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~-~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~  579 (791)
T 3m0c_C          501 KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKL  579 (791)
T ss_dssp             TSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             CCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC-ceEEEEeCCCCCceEEEEecCCCeEEEEeCCC
Confidence            7554433332 2235778999997555555443  267888887532 22122222224567889888888887776666


Q ss_pred             CeEEEEeCCCCceEEeecC---CCCEEEEEECCCCcEEEEeCCCeEEEEeCCCce
Q 024372          168 GGVRLWDARSGKIVQTLET---KSPVTSAEVSRDGRYITTADGSSVKFWDANHFG  219 (268)
Q Consensus       168 ~~i~iwd~~~~~~~~~~~~---~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~  219 (268)
                      +.|...|+........+..   -.....+++..+.-|++-...+.|...|..+++
T Consensus       580 ~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG~  634 (791)
T 3m0c_C          580 HSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGS  634 (791)
T ss_dssp             TEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred             CcEEEEecCCCceEEEecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCCCc
Confidence            7899999865443333322   123557777555333333355778777765543

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.50  E-value=0.019  Score=46.43  Aligned_cols=222  Identities=14%  Similarity=0.160  Sum_probs=105.2

Q ss_pred             CcEEEEEeCC----CCeEEeeCCCCCeEEEeeCccCcE-EEEEecCCCcEEEEeeCC-----CcEEEEeCCCCCeeeee-
Q 024372           31 GFFLVSASKD----SSPMLRNGETGDWIGTFEGHKGAV-WSCCLDANALFSASGSAD-----FTAKLWDALTGDEKHSF-   99 (268)
Q Consensus        31 g~~l~s~s~d----~~i~iw~~~~~~~~~~~~~h~~~V-~~~~~~~~~~~l~s~s~D-----~~v~iw~~~~~~~~~~~-   99 (268)
                      +.+++.|+.+    ..+..+|..+.++...-.-..... .+++ ..++.+++.|+.+     ..+.++|..+..-...- 
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~   94 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMV-YMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN   94 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEE-EECCEEEEEeCcCCCccccceEEECCCCCceeeCCC
Confidence            4455566544    346678888876543211111111 1111 2256677777755     35778887765422211 


Q ss_pred             -ccCCe-EEEEEECCCCCEEEEeeCCC-----eEEEEECCCCCCCCeEec---CCcccEEEEEEeCCCCcEEEEeeC---
Q 024372          100 -EHKHI-VRACAFSEDTHLLLTGGFEK-----ILRIFDLNRPDAPPREVG---NSSGSIRTVAWLHSDQTILSSCTD---  166 (268)
Q Consensus       100 -~~~~~-v~~v~~~~~~~~l~s~~~d~-----~i~~~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~---  166 (268)
                       ..... -..+.+  ++++++.|+.++     .+..||+.+..-  ....   .....-..+. . ++..++.+|.+   
T Consensus        95 ~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W--~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~  168 (302)
T 2xn4_A           95 MRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEW--FHVAPMNTRRSSVGVGV-V-GGLLYAVGGYDVAS  168 (302)
T ss_dssp             CSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEE--EEECCCSSCCBSCEEEE-E-TTEEEEECCEETTT
T ss_pred             CCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeE--eecCCCCCcccCceEEE-E-CCEEEEEeCCCCCC
Confidence             11111 111222  567777777553     466778754321  1111   1111111222 2 33333433321   


Q ss_pred             ---CCeEEEEeCCCCceEEe--ecCCCCEEEEEECCCCcEEE-EeCC-----CeEEEEeCCCceeeeEEeCCCC--ceee
Q 024372          167 ---SGGVRLWDARSGKIVQT--LETKSPVTSAEVSRDGRYIT-TADG-----SSVKFWDANHFGLVKGYNMPCN--TESA  233 (268)
Q Consensus       167 ---d~~i~iwd~~~~~~~~~--~~~~~~v~~~~~s~~g~~l~-~~~~-----~~v~~wd~~~~~~~~~~~~~~~--~~~~  233 (268)
                         -+.+.+||+.+.+=...  +.....-.+++.. ++++++ ++.+     ..+.+||.++..-...-..+..  ....
T Consensus       169 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~  247 (302)
T 2xn4_A          169 RQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL-NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGV  247 (302)
T ss_dssp             TEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred             CccccEEEEEeCCCCcEEECCCCccccccccEEEE-CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeE
Confidence               23588999987653322  2211111122222 455544 4432     4688999876543322222221  1122


Q ss_pred             EEcCCCCCEEEeccCCC-----eEEEEECCCCcE
Q 024372          234 SLEPKLGNIFIAGGEDM-----WVHVFDFHTGEQ  262 (268)
Q Consensus       234 ~~~~~~~~~~~~gs~d~-----~i~~wd~~~g~~  262 (268)
                      +..  ++++++.||.++     .+.+||..+++-
T Consensus       248 ~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  279 (302)
T 2xn4_A          248 CAV--NGLLYVVGGDDGSCNLASVEYYNPTTDKW  279 (302)
T ss_dssp             EEE--TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred             EEE--CCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence            222  578888888653     489999887654

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.49  E-value=0.054  Score=48.94  Aligned_cols=197  Identities=7%  Similarity=-0.079  Sum_probs=117.6

Q ss_pred             CCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCc-EEEEeeCCCcEEEEeCCCCCe
Q 024372           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANAL-FSASGSADFTAKLWDALTGDE   95 (268)
Q Consensus        17 ~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~-~l~s~s~D~~v~iw~~~~~~~   95 (268)
                      ....+++|++  .++....+-..++.|..++.........+..-......+++.+.+. +..+-...+.|.+.++.....
T Consensus        37 ~~~~~l~~d~--~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~  114 (628)
T 4a0p_A           37 KEASALDFDV--TDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR  114 (628)
T ss_dssp             SCEEEEEEET--TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC
T ss_pred             CceEEEEEEC--CCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE
Confidence            3456888886  3455555666677777777654433323332223456778876544 445656678888888865443


Q ss_pred             eeee-ccCCeEEEEEECCCCCEEEEeeC--CCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEE
Q 024372           96 KHSF-EHKHIVRACAFSEDTHLLLTGGF--EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRL  172 (268)
Q Consensus        96 ~~~~-~~~~~v~~v~~~~~~~~l~s~~~--d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~i  172 (268)
                      ...+ ..-...+.+++.|....|+-..+  ...|...++....  ...+.........+++.+.++.++.+-...+.|..
T Consensus       115 ~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~--~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~  192 (628)
T 4a0p_A          115 QVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE--RTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIES  192 (628)
T ss_dssp             EEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS--CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             EEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc--eEEEECCCCCcceEEEccccCEEEEEECCCCEEEE
Confidence            2222 22234678999985445554442  4677777775332  22222233456788988888888888777789999


Q ss_pred             EeCCCCceEEee-cCCCCEEEEEECCCCcEEEEeCCCeEEEEeCCCc
Q 024372          173 WDARSGKIVQTL-ETKSPVTSAEVSRDGRYITTADGSSVKFWDANHF  218 (268)
Q Consensus       173 wd~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~  218 (268)
                      .|+..... +.+ ........+++..+.-|++-...+.|...|..++
T Consensus       193 ~d~dG~~~-~v~~~~l~~P~glav~~~~ly~tD~~~~~I~~~dk~tg  238 (628)
T 4a0p_A          193 SNMLGLNR-EVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSG  238 (628)
T ss_dssp             EETTSCSC-EEEEECCSCEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred             EcCCCCce-EEeeccCCCceEEEEECCEEEEecCCCCEEEEEECCCC
Confidence            99875433 222 2223356788876433333334678888886544

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.47  E-value=0.019  Score=46.47  Aligned_cols=220  Identities=10%  Similarity=0.089  Sum_probs=106.7

Q ss_pred             cEEEEEeCC--CCeEEeeCCCCCeEEE--eeCccCcEEEEEecCCCcEEEEeeCC----CcEEEEeCCCCCeeeeec--c
Q 024372           32 FFLVSASKD--SSPMLRNGETGDWIGT--FEGHKGAVWSCCLDANALFSASGSAD----FTAKLWDALTGDEKHSFE--H  101 (268)
Q Consensus        32 ~~l~s~s~d--~~i~iw~~~~~~~~~~--~~~h~~~V~~~~~~~~~~~l~s~s~D----~~v~iw~~~~~~~~~~~~--~  101 (268)
                      .+++.|+.+  ..+.++|..++++...  +......-..+  ..++.+++.|+.+    ..+.++|..++.-.....  .
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~   90 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACV--FWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT   90 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEE--EETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEE--EECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence            455555543  4667789888876532  11111111111  2256667777755    567788887764322211  1


Q ss_pred             CCe-EEEEEECCCCCEEEEeeCC------CeEEEEECCCCCCCCeEec---CCcccEEEEEEeCCCCcEEEEeeC-----
Q 024372          102 KHI-VRACAFSEDTHLLLTGGFE------KILRIFDLNRPDAPPREVG---NSSGSIRTVAWLHSDQTILSSCTD-----  166 (268)
Q Consensus       102 ~~~-v~~v~~~~~~~~l~s~~~d------~~i~~~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~-----  166 (268)
                      ... -..+.+  ++++++.|+.+      ..+.+||+.+...  ....   .....-..+. . ++..++.+|..     
T Consensus        91 ~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W--~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~  164 (306)
T 3ii7_A           91 PRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESW--HTKPSMLTQRCSHGMVE-A-NGLIYVCGGSLGNNVS  164 (306)
T ss_dssp             CCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEE--EEECCCSSCCBSCEEEE-E-TTEEEEECCEESCTTT
T ss_pred             cccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCce--EeCCCCcCCcceeEEEE-E-CCEEEEECCCCCCCCc
Confidence            111 111222  56777777765      4577888764321  1111   1111111222 2 33333433321     


Q ss_pred             ---CCeEEEEeCCCCceEEe--ecCCCCEEEEEECCCCcEEEE-eCC-----CeEEEEeCCCceeeeEEeCCCC--ceee
Q 024372          167 ---SGGVRLWDARSGKIVQT--LETKSPVTSAEVSRDGRYITT-ADG-----SSVKFWDANHFGLVKGYNMPCN--TESA  233 (268)
Q Consensus       167 ---d~~i~iwd~~~~~~~~~--~~~~~~v~~~~~s~~g~~l~~-~~~-----~~v~~wd~~~~~~~~~~~~~~~--~~~~  233 (268)
                         -+.+.+||+.+.+=...  +.....-.++... ++++++. +.+     ..+.+||+.+..-...-..+..  ....
T Consensus       165 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~  243 (306)
T 3ii7_A          165 GRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKC  243 (306)
T ss_dssp             CEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEE
T ss_pred             ccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeE
Confidence               24588999987753222  2111111122222 5555443 321     4688899876433222122221  1122


Q ss_pred             EEcCCCCCEEEeccCC-----CeEEEEECCCCcE
Q 024372          234 SLEPKLGNIFIAGGED-----MWVHVFDFHTGEQ  262 (268)
Q Consensus       234 ~~~~~~~~~~~~gs~d-----~~i~~wd~~~g~~  262 (268)
                      ...  ++++++.||.+     ..+.+||.++.+-
T Consensus       244 ~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W  275 (306)
T 3ii7_A          244 AAV--GSIVYVLAGFQGVGRLGHILEYNTETDKW  275 (306)
T ss_dssp             EEE--TTEEEEEECBCSSSBCCEEEEEETTTTEE
T ss_pred             EEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeE
Confidence            222  57888888854     4689999887653

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.42  E-value=0.015  Score=47.28  Aligned_cols=225  Identities=13%  Similarity=0.118  Sum_probs=107.2

Q ss_pred             CCCcEEEEEeCC----CCeEEeeCCCCCeEEEeeCccCcE-EEEEecCCCcEEEEeeC----C-----CcEEEEeCCCCC
Q 024372           29 PDGFFLVSASKD----SSPMLRNGETGDWIGTFEGHKGAV-WSCCLDANALFSASGSA----D-----FTAKLWDALTGD   94 (268)
Q Consensus        29 ~dg~~l~s~s~d----~~i~iw~~~~~~~~~~~~~h~~~V-~~~~~~~~~~~l~s~s~----D-----~~v~iw~~~~~~   94 (268)
                      -++.+++.|+.+    ..+.++|..++++...-....... .+++ ..++.+++.|+.    +     ..+.++|..+..
T Consensus        23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~  101 (308)
T 1zgk_A           23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGC-VVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ  101 (308)
T ss_dssp             CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred             CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEE-EECCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence            356666767642    356788988887653211111110 1111 225666666665    2     457788887654


Q ss_pred             eeeeec--cCC-eEEEEEECCCCCEEEEeeCC-----CeEEEEECCCCCCCC-eEecCCcccEEEEEEeCCCCcEEEEee
Q 024372           95 EKHSFE--HKH-IVRACAFSEDTHLLLTGGFE-----KILRIFDLNRPDAPP-REVGNSSGSIRTVAWLHSDQTILSSCT  165 (268)
Q Consensus        95 ~~~~~~--~~~-~v~~v~~~~~~~~l~s~~~d-----~~i~~~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~  165 (268)
                      -...-.  ... .-..+.+  ++++++.|+.+     ..+..||+.+.+... .........-..+. . ++ .+++.|+
T Consensus       102 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~-~~-~iyv~GG  176 (308)
T 1zgk_A          102 WSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV-L-NR-LLYAVGG  176 (308)
T ss_dssp             EEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE-E-TT-EEEEECC
T ss_pred             EeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEE-E-CC-EEEEEeC
Confidence            222111  111 1112222  56777777643     356778875432100 00111111112222 2 33 4444443


Q ss_pred             CC-----CeEEEEeCCCCceEEe--ecCCCCEEEEEECCCCcEEE-EeCC-----CeEEEEeCCCceeeeEEeCCCC--c
Q 024372          166 DS-----GGVRLWDARSGKIVQT--LETKSPVTSAEVSRDGRYIT-TADG-----SSVKFWDANHFGLVKGYNMPCN--T  230 (268)
Q Consensus       166 ~d-----~~i~iwd~~~~~~~~~--~~~~~~v~~~~~s~~g~~l~-~~~~-----~~v~~wd~~~~~~~~~~~~~~~--~  230 (268)
                      .+     +.+.+||+.+.+=...  +.....-.+++.. ++++++ ++.+     ..+.+||+.+..-...-..+..  .
T Consensus       177 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~  255 (308)
T 1zgk_A          177 FDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSA  255 (308)
T ss_dssp             BCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBS
T ss_pred             CCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccc
Confidence            32     4588999987653221  1111111122222 555544 4332     4688999876543322222222  1


Q ss_pred             eeeEEcCCCCCEEEeccCC-----CeEEEEECCCCcE
Q 024372          231 ESASLEPKLGNIFIAGGED-----MWVHVFDFHTGEQ  262 (268)
Q Consensus       231 ~~~~~~~~~~~~~~~gs~d-----~~i~~wd~~~g~~  262 (268)
                      ......  ++++++.||.+     ..+.+||..+.+-
T Consensus       256 ~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  290 (308)
T 1zgk_A          256 LGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDTW  290 (308)
T ss_dssp             CEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred             eEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCEE
Confidence            122222  47888888754     4588999887654

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.27  E-value=0.1  Score=47.11  Aligned_cols=198  Identities=7%  Similarity=-0.089  Sum_probs=106.9

Q ss_pred             CeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCe-EEEeeCccCcEEEEEecCCC-cEEEEeeCCCcEEEEeCCCCCe
Q 024372           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW-IGTFEGHKGAVWSCCLDANA-LFSASGSADFTAKLWDALTGDE   95 (268)
Q Consensus        18 ~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~-~~~~~~h~~~V~~~~~~~~~-~~l~s~s~D~~v~iw~~~~~~~   95 (268)
                      ...+++|++  .++....+-...+.|..++...... ...+..--.....+++.+.+ .+..+-...+.|.+.++.....
T Consensus        41 ~~~~ld~~~--~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~  118 (619)
T 3s94_A           41 DAAAVDFVF--SHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR  118 (619)
T ss_dssp             CEEEEEEET--TTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             ceEEEEEEe--CCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE
Confidence            345667765  2344444444445555555543321 22233222457788998854 4555666778999999865544


Q ss_pred             eeee-ccCCeEEEEEECCCCCEEEEeeC--CCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEE
Q 024372           96 KHSF-EHKHIVRACAFSEDTHLLLTGGF--EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRL  172 (268)
Q Consensus        96 ~~~~-~~~~~v~~v~~~~~~~~l~s~~~--d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~i  172 (268)
                      .... ..-...+.+++.|....|+-+.+  ...|...++.. ................+++.+.++.++.+-...+.|..
T Consensus       119 ~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG-~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~  197 (619)
T 3s94_A          119 KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHK  197 (619)
T ss_dssp             EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTS-CSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEE
T ss_pred             EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCC-CceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEE
Confidence            3333 22234567888886555554443  35666667643 22222222223356788888888888777666678999


Q ss_pred             EeCCCCceEEeec-CCCCEEEEEECCCCcEEEEeCCCeEEEEeCCCc
Q 024372          173 WDARSGKIVQTLE-TKSPVTSAEVSRDGRYITTADGSSVKFWDANHF  218 (268)
Q Consensus       173 wd~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~  218 (268)
                      .|+.......... .......+++.++.-|++-...+.|...|..++
T Consensus       198 ~~~dG~~~~~~~~~~~~~P~gi~~~~~~ly~td~~~~~V~~~d~~tg  244 (619)
T 3s94_A          198 SNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTG  244 (619)
T ss_dssp             ESSSCCEEC---------CCCEEESSSEEEEECTTTCSEEEEESSSC
T ss_pred             ecCCCCccEEEEeCCCCCceEEEEeCCEEEEecCCCCEEEEEECCCC
Confidence            8886433222222 111234677776633333234567888887554

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.08  E-value=0.085  Score=42.85  Aligned_cols=219  Identities=12%  Similarity=0.073  Sum_probs=103.0

Q ss_pred             EEEEeCCCCeEEeeCCCCCeEE-EeeCccCcEEEEEecCCCcEEEEeeC----C---C----cEEEEeCCCCCeeeeecc
Q 024372           34 LVSASKDSSPMLRNGETGDWIG-TFEGHKGAVWSCCLDANALFSASGSA----D---F----TAKLWDALTGDEKHSFEH  101 (268)
Q Consensus        34 l~s~s~d~~i~iw~~~~~~~~~-~~~~h~~~V~~~~~~~~~~~l~s~s~----D---~----~v~iw~~~~~~~~~~~~~  101 (268)
                      ++.|+  ..+.+||..++++.. .+..........+...++.+++.|+.    +   .    .+..||..++.=......
T Consensus         8 ~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~   85 (315)
T 4asc_A            8 FMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPL   85 (315)
T ss_dssp             EEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCB
T ss_pred             EEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCC
Confidence            33444  567889999888653 22212222222333456677677763    1   1    266778776542221111


Q ss_pred             CCe---EEEEEECCCCCEEEEeeCC--------CeEEEEECCCCCCC-CeEecCCcccEEEEEEeCCCCcEEEEeeC-C-
Q 024372          102 KHI---VRACAFSEDTHLLLTGGFE--------KILRIFDLNRPDAP-PREVGNSSGSIRTVAWLHSDQTILSSCTD-S-  167 (268)
Q Consensus       102 ~~~---v~~v~~~~~~~~l~s~~~d--------~~i~~~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-d-  167 (268)
                      +.+   -..+.+  ++++++.|+.+        ..+..||+.+.+-. ..........-..+.  .++ .+++.|+. + 
T Consensus        86 p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~-~iyv~GG~~~~  160 (315)
T 4asc_A           86 PSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMD-LVYVIGGKGSD  160 (315)
T ss_dssp             SSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETT-EEEEECCBCTT
T ss_pred             CcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECC-EEEEEeCCCCC
Confidence            111   111222  56677777742        44778887643210 000111111111222  233 34444433 1 


Q ss_pred             ----CeEEEEeCCCCceEEe--ecCCCCEEEEEECCCCcEE-EEeCC-----CeEEEEeCCCceeeeEEeCCCCc--eee
Q 024372          168 ----GGVRLWDARSGKIVQT--LETKSPVTSAEVSRDGRYI-TTADG-----SSVKFWDANHFGLVKGYNMPCNT--ESA  233 (268)
Q Consensus       168 ----~~i~iwd~~~~~~~~~--~~~~~~v~~~~~s~~g~~l-~~~~~-----~~v~~wd~~~~~~~~~~~~~~~~--~~~  233 (268)
                          +.+.+||+.+.+=...  +.....-.+++.. +++++ +++.+     ..+.+||+.+..-...-..+...  ...
T Consensus       161 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~  239 (315)
T 4asc_A          161 RKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH-DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSL  239 (315)
T ss_dssp             SCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred             CcccceEEEEeCCCCeEEECCCCCCchhceEEEEE-CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeE
Confidence                3688999987643221  1111111122222 45554 44432     25788898765433222222221  122


Q ss_pred             EEcCCCCCEEEeccCCC--------------eEEEEECCCCcE
Q 024372          234 SLEPKLGNIFIAGGEDM--------------WVHVFDFHTGEQ  262 (268)
Q Consensus       234 ~~~~~~~~~~~~gs~d~--------------~i~~wd~~~g~~  262 (268)
                      +..  .+++++.||.++              .|.+||.++.+=
T Consensus       240 ~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W  280 (315)
T 4asc_A          240 VSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKW  280 (315)
T ss_dssp             EEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEE
T ss_pred             EEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCChh
Confidence            222  478888887642              478899877653

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.01  E-value=0.18  Score=45.41  Aligned_cols=201  Identities=6%  Similarity=-0.131  Sum_probs=113.0

Q ss_pred             CcEEEEEecCCCc-EEEEeeCCCcEEEEeCCCCCe-eeeeccC-CeEEEEEECCCCC-EEEEeeCCCeEEEEECCCCCCC
Q 024372           62 GAVWSCCLDANAL-FSASGSADFTAKLWDALTGDE-KHSFEHK-HIVRACAFSEDTH-LLLTGGFEKILRIFDLNRPDAP  137 (268)
Q Consensus        62 ~~V~~~~~~~~~~-~l~s~s~D~~v~iw~~~~~~~-~~~~~~~-~~v~~v~~~~~~~-~l~s~~~d~~i~~~d~~~~~~~  137 (268)
                      .....++|++.+. ++.+-...+.|+.+++..... ...+... .....+++.+.+. +..+-...+.|.+.++.... .
T Consensus        40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~-~  118 (619)
T 3s94_A           40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL-R  118 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-C
T ss_pred             CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCC-E
Confidence            3456788887554 444555567888888765432 2222222 4567899988554 54555567889999986432 2


Q ss_pred             CeEecCCcccEEEEEEeCCCCcEEEEeeC-CCeEEEEeCCCCceEEeec-CCCCEEEEEECCCCcEE-EEe-CCCeEEEE
Q 024372          138 PREVGNSSGSIRTVAWLHSDQTILSSCTD-SGGVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYI-TTA-DGSSVKFW  213 (268)
Q Consensus       138 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~g~~l-~~~-~~~~v~~w  213 (268)
                      .............+++.|.++.++.+-.. .+.|...++.......... .-...+.+++++++..| .+- ..+.|...
T Consensus       119 ~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~  198 (619)
T 3s94_A          119 KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKS  198 (619)
T ss_dssp             EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred             EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEe
Confidence            12221222334567888877777766432 3466666665332222222 23457899999875544 343 45688888


Q ss_pred             eCCCceeeeEEe-CCCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEee
Q 024372          214 DANHFGLVKGYN-MPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       214 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~  265 (268)
                      |+.......... ....+..+++..  +.++++-...+.|...|..+|+.+.+
T Consensus       199 ~~dG~~~~~~~~~~~~~P~gi~~~~--~~ly~td~~~~~V~~~d~~tg~~~~~  249 (619)
T 3s94_A          199 NLDGTNRQAVVKGSLPHPFALTLFE--DILYWTDWSTHSILACNKYTGEGLRE  249 (619)
T ss_dssp             SSSCCEEC---------CCCEEESS--SEEEEECTTTCSEEEEESSSCCCCEE
T ss_pred             cCCCCccEEEEeCCCCCceEEEEeC--CEEEEecCCCCEEEEEECCCCcccEE
Confidence            886432221111 112234555543  46677767778899999888865443

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.99  E-value=0.097  Score=42.59  Aligned_cols=220  Identities=11%  Similarity=0.090  Sum_probs=101.6

Q ss_pred             EEEEEeCCCCeEEeeCCCCCeEE-EeeCccCcEEEEEecCCCcEEEEeeC----CC-------cEEEEeCCCCCeeeeec
Q 024372           33 FLVSASKDSSPMLRNGETGDWIG-TFEGHKGAVWSCCLDANALFSASGSA----DF-------TAKLWDALTGDEKHSFE  100 (268)
Q Consensus        33 ~l~s~s~d~~i~iw~~~~~~~~~-~~~~h~~~V~~~~~~~~~~~l~s~s~----D~-------~v~iw~~~~~~~~~~~~  100 (268)
                      .++.|+.  .+..||..++++.. .+..............++.+++.|+.    ++       .+..+|..+..=...-.
T Consensus        18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~   95 (318)
T 2woz_A           18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP   95 (318)
T ss_dssp             EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC
T ss_pred             hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC
Confidence            3444443  36788999888754 12211122222233456667777773    11       16667776654222111


Q ss_pred             --cCCe-EEEEEECCCCCEEEEeeCC-------CeEEEEECCCCCCCCeEecCCcccE--EEEEEeCCCCcEEEEeeC--
Q 024372          101 --HKHI-VRACAFSEDTHLLLTGGFE-------KILRIFDLNRPDAPPREVGNSSGSI--RTVAWLHSDQTILSSCTD--  166 (268)
Q Consensus       101 --~~~~-v~~v~~~~~~~~l~s~~~d-------~~i~~~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~~~~--  166 (268)
                        .+.. -..+.+  ++++++.|+.+       ..+..||+.+.+-  ........+.  .+++. .++..++.+|..  
T Consensus        96 ~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W--~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~  170 (318)
T 2woz_A           96 LPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKW--SEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDD  170 (318)
T ss_dssp             BSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEE--EEECCCSSCEESCEEEE-ETTEEEEECCEESS
T ss_pred             CCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCE--eECCCCCCcccccEEEE-ECCEEEEEcCCCCC
Confidence              1111 111222  56777777754       2466778754321  1111000000  01121 234334444431  


Q ss_pred             ---CCeEEEEeCCCCceEEe--ecCCCCEEEEEECCCCcEE-EEeCC-----CeEEEEeCCCceeeeEEeCCCCc--eee
Q 024372          167 ---SGGVRLWDARSGKIVQT--LETKSPVTSAEVSRDGRYI-TTADG-----SSVKFWDANHFGLVKGYNMPCNT--ESA  233 (268)
Q Consensus       167 ---d~~i~iwd~~~~~~~~~--~~~~~~v~~~~~s~~g~~l-~~~~~-----~~v~~wd~~~~~~~~~~~~~~~~--~~~  233 (268)
                         -+.+.++|+.+.+=...  +.....-.+++.. +++++ +++.+     ..+.+||+.+.+-...-..+...  ...
T Consensus       171 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~  249 (318)
T 2woz_A          171 KKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISL  249 (318)
T ss_dssp             SCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEE
T ss_pred             CCccceEEEEcCCCCEEEECCCCCCCcccceEEEE-CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEE
Confidence               13588999987753222  2111111122333 44544 44421     35778898764332222222221  122


Q ss_pred             EEcCCCCCEEEeccCC--------------CeEEEEECCCCcE
Q 024372          234 SLEPKLGNIFIAGGED--------------MWVHVFDFHTGEQ  262 (268)
Q Consensus       234 ~~~~~~~~~~~~gs~d--------------~~i~~wd~~~g~~  262 (268)
                      ...  .+++++.||.+              ..+.+||..+.+=
T Consensus       250 ~~~--~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W  290 (318)
T 2woz_A          250 VSL--AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEW  290 (318)
T ss_dssp             EEE--TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEE
T ss_pred             EEE--CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEe
Confidence            222  47888888754              3588899887654

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=96.97  E-value=0.096  Score=41.56  Aligned_cols=198  Identities=12%  Similarity=0.124  Sum_probs=123.1

Q ss_pred             EeeCccCcEEEEEecCCCcEE-EEeeCCCcEEEEeCCCCCeeeeeccC--CeEEEEEECCCCCEEEEeeCCCeEEEEECC
Q 024372           56 TFEGHKGAVWSCCLDANALFS-ASGSADFTAKLWDALTGDEKHSFEHK--HIVRACAFSEDTHLLLTGGFEKILRIFDLN  132 (268)
Q Consensus        56 ~~~~h~~~V~~~~~~~~~~~l-~s~s~D~~v~iw~~~~~~~~~~~~~~--~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~  132 (268)
                      .+.+=...+..+++.|++..| +....++.|...|.. ++..+.+...  .-.-.+++.+++.++++.-.++.+.++++.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            344545679999999876544 446668888888987 7777766433  235567778888776665566788888875


Q ss_pred             CCCCC--CeEe------cCCcccEEEEEEeCCCCcEEEEeeCCC-eEEEEeC-CCCceEEeec--------CCCCEEEEE
Q 024372          133 RPDAP--PREV------GNSSGSIRTVAWLHSDQTILSSCTDSG-GVRLWDA-RSGKIVQTLE--------TKSPVTSAE  194 (268)
Q Consensus       133 ~~~~~--~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~d~-~i~iwd~-~~~~~~~~~~--------~~~~v~~~~  194 (268)
                      .....  ....      ...+.....++|.+.+..++++.-.+. .|..|+- .....+..+.        .-....+++
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~  179 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE  179 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence            43320  1111      112344688999998887777765533 4555551 1112222221        113467899


Q ss_pred             ECCC-CcEEEEe-CCCeEEEEeCCCceeeeEEeCCC----------CceeeEEcCCCCCEEEeccCCCeEEEEEC
Q 024372          195 VSRD-GRYITTA-DGSSVKFWDANHFGLVKGYNMPC----------NTESASLEPKLGNIFIAGGEDMWVHVFDF  257 (268)
Q Consensus       195 ~s~~-g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~gs~d~~i~~wd~  257 (268)
                      ++|. +++++.+ .++.+..+|.+ ++.+..+....          ...-+++.+ +|.++++ |+-..+|.+.-
T Consensus       180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~-~G~lyIv-sE~n~~y~f~~  251 (255)
T 3qqz_A          180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDA-SGNIYIV-SEPNRFYRFTP  251 (255)
T ss_dssp             EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECT-TCCEEEE-ETTTEEEEEEC
T ss_pred             EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECC-CCCEEEE-cCCceEEEEEe
Confidence            9986 4555544 56788889976 44666665542          335677777 5886666 66667777754

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.88  E-value=0.14  Score=42.13  Aligned_cols=195  Identities=11%  Similarity=0.078  Sum_probs=120.8

Q ss_pred             eEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEE-EeeC----ccC--cEEEEEe---cCCCcEEEEee----------
Q 024372           21 DLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIG-TFEG----HKG--AVWSCCL---DANALFSASGS----------   80 (268)
Q Consensus        21 ~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~-~~~~----h~~--~V~~~~~---~~~~~~l~s~s----------   80 (268)
                      +++|++  .+|.++++.-..++|..|+...+.... .+.+    ...  .+..+.+   .+++++++...          
T Consensus        17 ~~~wd~--~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~   94 (334)
T 2p9w_A           17 DTIYDR--TRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ   94 (334)
T ss_dssp             CEEEET--TTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred             CccCcC--CCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence            788875  356666666689999999998664332 3332    111  3578889   68887776432          


Q ss_pred             ---CCCcEEEEeCC---CCCeeeeecc-------------C-CeEEEEEECCCCCEEEEeeCC-CeEEEEECCCCCCCCe
Q 024372           81 ---ADFTAKLWDAL---TGDEKHSFEH-------------K-HIVRACAFSEDTHLLLTGGFE-KILRIFDLNRPDAPPR  139 (268)
Q Consensus        81 ---~D~~v~iw~~~---~~~~~~~~~~-------------~-~~v~~v~~~~~~~~l~s~~~d-~~i~~~d~~~~~~~~~  139 (268)
                         .+..+..+|+.   +++.......             . .....+...++|+.-++++.. +.|...+... + ...
T Consensus        95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG-~-~~~  172 (334)
T 2p9w_A           95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADG-K-TVS  172 (334)
T ss_dssp             CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTS-C-CEE
T ss_pred             ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC-C-EEe
Confidence               26779999998   6766554421             1 247789999999999988888 8877777542 2 112


Q ss_pred             Eec------CCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCce--EEee--c---CCCCEEEE-EECCCCcEE-EE
Q 024372          140 EVG------NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI--VQTL--E---TKSPVTSA-EVSRDGRYI-TT  204 (268)
Q Consensus       140 ~~~------~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~--~~~~--~---~~~~v~~~-~~s~~g~~l-~~  204 (268)
                      .+.      ......+.+++.|++..+++.-+ .+.|.-+|+++...  +..-  .   .-.....+ ..-.+|+.+ ++
T Consensus       173 ~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~  251 (334)
T 2p9w_A          173 TFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVG  251 (334)
T ss_dssp             EEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEE
T ss_pred             eeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEE
Confidence            111      11122457899998887777766 69999999885332  2211  1   11123343 344567764 33


Q ss_pred             e-CCCeEEEEeCCCcee
Q 024372          205 A-DGSSVKFWDANHFGL  220 (268)
Q Consensus       205 ~-~~~~v~~wd~~~~~~  220 (268)
                      . ..+.+.+.+...++.
T Consensus       252 ~~~~~~~~l~S~DgW~s  268 (334)
T 2p9w_A          252 ARAPYAISFRSWDNWKS  268 (334)
T ss_dssp             EETTEEEEEECSSTTSE
T ss_pred             cCCCCEEEEECCCCcce
Confidence            3 355666776655543

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.64  E-value=0.055  Score=44.87  Aligned_cols=107  Identities=11%  Similarity=0.052  Sum_probs=65.8

Q ss_pred             cEEEEEeCCCCeEEeeCCCCCeEEEeeCc-cCcEEEEEec---CCCcEEEEe-eCCCcEEEEeCCCCCeeeeeccC----
Q 024372           32 FFLVSASKDSSPMLRNGETGDWIGTFEGH-KGAVWSCCLD---ANALFSASG-SADFTAKLWDALTGDEKHSFEHK----  102 (268)
Q Consensus        32 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~h-~~~V~~~~~~---~~~~~l~s~-s~D~~v~iw~~~~~~~~~~~~~~----  102 (268)
                      .+++.++.||.+.-.|..+|+.+=+++.- ..++....-.   .++..++-. ..||.+..++..++.....+..+    
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            47888999999999999999876555432 1233221111   123333333 58999999998887655444322    


Q ss_pred             -CeEEE----EEEC----CCCCEEEEeeCCCeEEEEECCCCCCCC
Q 024372          103 -HIVRA----CAFS----EDTHLLLTGGFEKILRIFDLNRPDAPP  138 (268)
Q Consensus       103 -~~v~~----v~~~----~~~~~l~s~~~d~~i~~~d~~~~~~~~  138 (268)
                       .++..    +...    ..+..+++|+.++.+...|+.+++...
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W  135 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIIS  135 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEE
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEE
Confidence             22221    0000    134578899999999999988876443

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.27  E-value=0.21  Score=41.23  Aligned_cols=55  Identities=9%  Similarity=-0.066  Sum_probs=29.0

Q ss_pred             eEEEEeCCCc--eeeeEEeCCCCceeeEEcCCCCCEEEeccCCC------eEEEEECCCCcEEee
Q 024372          209 SVKFWDANHF--GLVKGYNMPCNTESASLEPKLGNIFIAGGEDM------WVHVFDFHTGEQIAI  265 (268)
Q Consensus       209 ~v~~wd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~------~i~~wd~~~g~~~~~  265 (268)
                      .+.+||+.+.  ..+.....+...-... .. ++++++.||.+.      .|.++++++++.+..
T Consensus       286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~-~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~  348 (357)
T 2uvk_A          286 STDIHLWHNGKWDKSGELSQGRAYGVSL-PW-NNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQ  348 (357)
T ss_dssp             CCEEEECC---CEEEEECSSCCBSSEEE-EE-TTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred             eEEEEecCCCceeeCCCCCCCcccceeE-Ee-CCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEee
Confidence            4678888654  3333322222211222 22 588888888542      466678887776653

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.24  E-value=0.39  Score=39.50  Aligned_cols=150  Identities=9%  Similarity=0.038  Sum_probs=90.4

Q ss_pred             EEEecCCC-cEEEEeeCCCcEEEEeCCCCCeee-eecc----C---CeEEEEEE---CCCCCEEEEee------------
Q 024372           66 SCCLDANA-LFSASGSADFTAKLWDALTGDEKH-SFEH----K---HIVRACAF---SEDTHLLLTGG------------  121 (268)
Q Consensus        66 ~~~~~~~~-~~l~s~s~D~~v~iw~~~~~~~~~-~~~~----~---~~v~~v~~---~~~~~~l~s~~------------  121 (268)
                      ++.|.+.. .++++.-..++|..|+...+.... .+..    .   ..+..+.+   .|+++++++..            
T Consensus        17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~   96 (334)
T 2p9w_A           17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSS   96 (334)
T ss_dssp             CEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCS
T ss_pred             CccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccccc
Confidence            35676644 444555589999999987554322 2322    1   13578889   68877777533            


Q ss_pred             -CCCeEEEEECC---CCCCCCeEec-C-----------CcccEEEEEEeCCCCcEEEEeeCC-CeEEEEeCCCCceEEee
Q 024372          122 -FEKILRIFDLN---RPDAPPREVG-N-----------SSGSIRTVAWLHSDQTILSSCTDS-GGVRLWDARSGKIVQTL  184 (268)
Q Consensus       122 -~d~~i~~~d~~---~~~~~~~~~~-~-----------~~~~v~~~~~~~~~~~~~~~~~~d-~~i~iwd~~~~~~~~~~  184 (268)
                       .++.+..||+.   +++....... .           .......++..+++. ..++++.. +.|...|.... .+..+
T Consensus        97 ~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn-aYVt~s~~~~~I~rV~pdG~-~~~~~  174 (334)
T 2p9w_A           97 HGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN-SYVAFALGMPAIARVSADGK-TVSTF  174 (334)
T ss_dssp             SSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC-EEEEEEESSCEEEEECTTSC-CEEEE
T ss_pred             CCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCC-EEEeCCCCCCeEEEEeCCCC-EEeee
Confidence             26778899987   5544322211 0           112356777776654 44445555 67766676533 22221


Q ss_pred             --cC-----CCCEEEEEECCCCcEEEEe-CCCeEEEEeCCC
Q 024372          185 --ET-----KSPVTSAEVSRDGRYITTA-DGSSVKFWDANH  217 (268)
Q Consensus       185 --~~-----~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~  217 (268)
                        ..     ....+.|+++|+|+.|+.. ..+.+..+|+..
T Consensus       175 ~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          175 AWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             EECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             eecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence              11     1236799999999877654 467898899874

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=95.93  E-value=0.53  Score=40.14  Aligned_cols=102  Identities=11%  Similarity=0.064  Sum_probs=67.5

Q ss_pred             CCcEEEEEeCCCCeEEeeCCCCCeEEEeeCc----cCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCC-----------
Q 024372           30 DGFFLVSASKDSSPMLRNGETGDWIGTFEGH----KGAVWSCCLDANALFSASGSADFTAKLWDALTGD-----------   94 (268)
Q Consensus        30 dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h----~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~-----------   94 (268)
                      +|..++.+ .+..+|..++......+.+.--    -..|..+..+|+|.+||-.+ ++.|.|-.+-.+.           
T Consensus        31 n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~  108 (452)
T 3pbp_A           31 NGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDA  108 (452)
T ss_dssp             TTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHT
T ss_pred             CCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccc
Confidence            45555544 4467777776644333344322    22577789999999987654 6688887765221           


Q ss_pred             -eeeeec-------cCCeEEEEEECC---CCCEEEEeeCCCeEEEEECCC
Q 024372           95 -EKHSFE-------HKHIVRACAFSE---DTHLLLTGGFEKILRIFDLNR  133 (268)
Q Consensus        95 -~~~~~~-------~~~~v~~v~~~~---~~~~l~s~~~d~~i~~~d~~~  133 (268)
                       ..+.+.       ...+|..+.|||   ++..|++-..|++||+||+..
T Consensus       109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~  158 (452)
T 3pbp_A          109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN  158 (452)
T ss_dssp             TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred             cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence             111222       245799999999   457888999999999999975

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=95.79  E-value=0.67  Score=38.39  Aligned_cols=139  Identities=7%  Similarity=0.007  Sum_probs=74.3

Q ss_pred             cEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCee--eeec----cCCeEEEEEECCC---CCEEEEeeC-C-----CeEE
Q 024372           63 AVWSCCLDANALFSASGSADFTAKLWDALTGDEK--HSFE----HKHIVRACAFSED---THLLLTGGF-E-----KILR  127 (268)
Q Consensus        63 ~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~--~~~~----~~~~v~~v~~~~~---~~~l~s~~~-d-----~~i~  127 (268)
                      .-..++|.|++.++++- .++.|++++  .+...  ..+.    .......++++|+   +..|+.+.. .     +.|.
T Consensus        32 ~P~~ia~~pdG~l~V~e-~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~  108 (352)
T 2ism_A           32 VPWALAFLPDGGMLIAE-RPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV  108 (352)
T ss_dssp             CEEEEEECTTSCEEEEE-TTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred             CceEEEEcCCCeEEEEe-CCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence            45678999999876654 568999988  33321  1111    1235678999998   445554433 2     5677


Q ss_pred             EEECCCCCC-----CCeEec---CCcccEEEEEEeCCCCcEEEEeeC------------CCeEEEEeCCC----------
Q 024372          128 IFDLNRPDA-----PPREVG---NSSGSIRTVAWLHSDQTILSSCTD------------SGGVRLWDARS----------  177 (268)
Q Consensus       128 ~~d~~~~~~-----~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~------------d~~i~iwd~~~----------  177 (268)
                      .|+......     ....+.   ........+++.|++..+++.+..            .+.|.-+|...          
T Consensus       109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~  188 (352)
T 2ism_A          109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLG  188 (352)
T ss_dssp             EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTT
T ss_pred             EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccC
Confidence            777653211     111111   001122467888877433433321            14565566542          


Q ss_pred             ----CceEEeecCCCCEEEEEECC-CCcEEEEe
Q 024372          178 ----GKIVQTLETKSPVTSAEVSR-DGRYITTA  205 (268)
Q Consensus       178 ----~~~~~~~~~~~~v~~~~~s~-~g~~l~~~  205 (268)
                          ...+.... ......++|+| +|+++++.
T Consensus       189 ~~~~~~~i~a~G-~rnp~g~a~d~~~g~l~v~d  220 (352)
T 2ism_A          189 RRGARPEVYSLG-HRNPQGLAWHPKTGELFSSE  220 (352)
T ss_dssp             CTTSCTTEEEEC-CSEECCCEECTTTCCEEEEE
T ss_pred             CCCCCccEEEEc-CCCcccEEEECCCCCEEEEE
Confidence                11122222 23366889999 67776654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=95.74  E-value=0.73  Score=38.37  Aligned_cols=180  Identities=12%  Similarity=0.122  Sum_probs=92.8

Q ss_pred             EEEEecCCCcEEEEee------------CCCcEEEEeCCCCC-eeeeeccC--------CeEEEEEECC--CCC--EEEE
Q 024372           65 WSCCLDANALFSASGS------------ADFTAKLWDALTGD-EKHSFEHK--------HIVRACAFSE--DTH--LLLT  119 (268)
Q Consensus        65 ~~~~~~~~~~~l~s~s------------~D~~v~iw~~~~~~-~~~~~~~~--------~~v~~v~~~~--~~~--~l~s  119 (268)
                      ..+.+.++|..+.+++            .+|.|.++|..+.. ....+...        -....+.+.+  ++.  ++++
T Consensus        53 EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vv  132 (355)
T 3sre_A           53 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV  132 (355)
T ss_dssp             CEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred             ceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEE
Confidence            3455677776555542            68899999987421 11222111        1234455433  343  4444


Q ss_pred             eeC--CCeEEEEECCCCCCCCe---Eec-CCcccEEEEEEeCCCCcEEEEee-----------------CCCeEEEEeCC
Q 024372          120 GGF--EKILRIFDLNRPDAPPR---EVG-NSSGSIRTVAWLHSDQTILSSCT-----------------DSGGVRLWDAR  176 (268)
Q Consensus       120 ~~~--d~~i~~~d~~~~~~~~~---~~~-~~~~~v~~~~~~~~~~~~~~~~~-----------------~d~~i~iwd~~  176 (268)
                      -..  +..|.+|++........   ... ..-...+.+...+++.. .++..                 ..+.|.-+|..
T Consensus       133 nh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~f-yvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~  211 (355)
T 3sre_A          133 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHF-YATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN  211 (355)
T ss_dssp             ECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEE-EEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT
T ss_pred             ECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCE-EecCCcEeCCcccccchhhccCCccEEEEEECC
Confidence            232  46777777653322111   111 11234566777776653 33321                 12455555553


Q ss_pred             CCceEEeecCCCCEEEEEECCCCcEEEEe--CCCeEEEEeCCCc-e--eeeEEeCCCCceeeEEcCCCCCEEEecc
Q 024372          177 SGKIVQTLETKSPVTSAEVSRDGRYITTA--DGSSVKFWDANHF-G--LVKGYNMPCNTESASLEPKLGNIFIAGG  247 (268)
Q Consensus       177 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~--~~~~v~~wd~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~gs  247 (268)
                        ++......-...+.++|+||++.+..+  ..+.|..||+... .  ..+.+..+..+.-+.....+|.+.+++.
T Consensus       212 --~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~  285 (355)
T 3sre_A          212 --DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCH  285 (355)
T ss_dssp             --CCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEE
T ss_pred             --eEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEec
Confidence              322222333457999999999866443  3578999998532 2  2234444433445555552378777654

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=95.63  E-value=1.8  Score=42.07  Aligned_cols=242  Identities=10%  Similarity=0.013  Sum_probs=129.3

Q ss_pred             CCCeeeEEEecCCC---CCcEEEEEeC-CCCeEEeeCCCCCeEEEeeC-ccCcEEEEEec--CCCcEEEEeeCCCcEEEE
Q 024372           16 SRPVVDLFYSPITP---DGFFLVSASK-DSSPMLRNGETGDWIGTFEG-HKGAVWSCCLD--ANALFSASGSADFTAKLW   88 (268)
Q Consensus        16 ~~~v~~~~f~~~~~---dg~~l~s~s~-d~~i~iw~~~~~~~~~~~~~-h~~~V~~~~~~--~~~~~l~s~s~D~~v~iw   88 (268)
                      .+.|.++++.|..+   .+.++|.|.. |++++|+++.+.+.+....- -.....++.+.  ....+|..|-.||.+.-+
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~  632 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF  632 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence            45799999977432   2479999997 99999999987765543221 11233333332  234567778889987654


Q ss_pred             --eCCCCCeeee---eccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEE-EEeCCC-CcEE
Q 024372           89 --DALTGDEKHS---FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTV-AWLHSD-QTIL  161 (268)
Q Consensus        89 --~~~~~~~~~~---~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~-~~~~~~-~~~~  161 (268)
                        |..++.....   +--..++.-..+...+..-+-+..++..-+|--+ +.  .....-.-..+..+ .|+... +.-+
T Consensus       633 ~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~--l~~s~l~~~~v~~~~~F~se~~~~g~  709 (1158)
T 3ei3_A          633 GLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HK--LVFSNVNLKEVNYMCPLNSDGYPDSL  709 (1158)
T ss_dssp             EECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESS-SS--EEEEEBSSSCCCEEEEECCSSSTTEE
T ss_pred             EEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcC-Cc--eEEeccChHHhceEeccCcccCCCcE
Confidence              4444443211   1122344433343333222222223444444322 11  11111111123333 332221 2223


Q ss_pred             EEeeCCCeEEEEeCCCCc--eEEeecCCCCEEEEEECCCCcEEE--EeC-------------------------------
Q 024372          162 SSCTDSGGVRLWDARSGK--IVQTLETKSPVTSAEVSRDGRYIT--TAD-------------------------------  206 (268)
Q Consensus       162 ~~~~~d~~i~iwd~~~~~--~~~~~~~~~~v~~~~~s~~g~~l~--~~~-------------------------------  206 (268)
                      +..+ ++.++|.-+...+  .+++++....+..++++|+.+.++  ++.                               
T Consensus       710 v~~~-~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  788 (1158)
T 3ei3_A          710 ALAN-NSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKL  788 (1158)
T ss_dssp             EEEC-SSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCC
T ss_pred             EEEc-CCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhccccccc
Confidence            3333 3679998875433  344556666788888888765432  211                               


Q ss_pred             -----------------CCeEEEEeCCCceeeeEEeCCCCceeeE-----EcCCCCCEEEecc----------CCCeEEE
Q 024372          207 -----------------GSSVKFWDANHFGLVKGYNMPCNTESAS-----LEPKLGNIFIAGG----------EDMWVHV  254 (268)
Q Consensus       207 -----------------~~~v~~wd~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~gs----------~d~~i~~  254 (268)
                                       -..|++.|-.+++.+..+....+....+     +..+...+|+.|.          ..|.|++
T Consensus       789 ~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~v  868 (1158)
T 3ei3_A          789 FSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVV  868 (1158)
T ss_dssp             C----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEE
T ss_pred             ccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEE
Confidence                             0137788888888888887765543222     1222346787765          2368999


Q ss_pred             EECCCCc
Q 024372          255 FDFHTGE  261 (268)
Q Consensus       255 wd~~~g~  261 (268)
                      |++..++
T Consensus       869 f~v~~~k  875 (1158)
T 3ei3_A          869 FQYSDGK  875 (1158)
T ss_dssp             EEEETTE
T ss_pred             EEEECCE
Confidence            9986444

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=95.62  E-value=0.81  Score=38.09  Aligned_cols=134  Identities=18%  Similarity=0.214  Sum_probs=72.7

Q ss_pred             CCCeEEEEECCCCCCCCeEec--C-----CcccEEEEEEeC--CCC-cEEEEeeC--CCeEEEEeCCCC--c--eEEeec
Q 024372          122 FEKILRIFDLNRPDAPPREVG--N-----SSGSIRTVAWLH--SDQ-TILSSCTD--SGGVRLWDARSG--K--IVQTLE  185 (268)
Q Consensus       122 ~d~~i~~~d~~~~~~~~~~~~--~-----~~~~v~~~~~~~--~~~-~~~~~~~~--d~~i~iwd~~~~--~--~~~~~~  185 (268)
                      .+|.|.++|+.++......+.  .     .......+.+.+  ++. .+++....  +.+|.+|++..+  .  .+.++.
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~  160 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR  160 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred             CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence            688899999864322222211  1     112344555544  232 34444332  357777776543  2  233444


Q ss_pred             CC--CCEEEEEECCCCcEEEEeC----C--------------CeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCE-EE
Q 024372          186 TK--SPVTSAEVSRDGRYITTAD----G--------------SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNI-FI  244 (268)
Q Consensus       186 ~~--~~v~~~~~s~~g~~l~~~~----~--------------~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  244 (268)
                      +.  ...+.+.+.++|.+.++..    +              +.|..+|...-+.  ....-..+.-++++| +++. ++
T Consensus       161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~~~--~~~~l~~pNGia~sp-Dg~~lYv  237 (355)
T 3sre_A          161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRV--VAEGFDFANGINISP-DGKYVYI  237 (355)
T ss_dssp             CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCCEE--EEEEESSEEEEEECT-TSSEEEE
T ss_pred             cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeEEE--eecCCcccCcceECC-CCCEEEE
Confidence            32  4589999999999877643    1              3455555432111  111112345677777 4654 45


Q ss_pred             eccCCCeEEEEECC
Q 024372          245 AGGEDMWVHVFDFH  258 (268)
Q Consensus       245 ~gs~d~~i~~wd~~  258 (268)
                      +-+..+.|+.|++.
T Consensus       238 adt~~~~I~~~~~~  251 (355)
T 3sre_A          238 AELLAHKIHVYEKH  251 (355)
T ss_dssp             EEGGGTEEEEEEEC
T ss_pred             EeCCCCeEEEEEEC
Confidence            55678899999985

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=95.60  E-value=0.8  Score=37.91  Aligned_cols=98  Identities=18%  Similarity=0.161  Sum_probs=57.5

Q ss_pred             CeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCe--EEEee---CccCcEEEEEecCC----CcEEEEeeCC-----C
Q 024372           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW--IGTFE---GHKGAVWSCCLDAN----ALFSASGSAD-----F   83 (268)
Q Consensus        18 ~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~--~~~~~---~h~~~V~~~~~~~~----~~~l~s~s~D-----~   83 (268)
                      .-.+++|.|   ||.+++ +..++.|.+++  +++.  +..+.   .-......++++|+    +.+.++-...     .
T Consensus        32 ~P~~ia~~p---dG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~  105 (352)
T 2ism_A           32 VPWALAFLP---DGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN  105 (352)
T ss_dssp             CEEEEEECT---TSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred             CceEEEEcC---CCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence            445888974   888555 56678888887  4432  22222   12346788999998    4444443322     5


Q ss_pred             cEEEEeCCCCCe-----e-eeecc----CCeEEEEEECCCCCEEEEee
Q 024372           84 TAKLWDALTGDE-----K-HSFEH----KHIVRACAFSEDTHLLLTGG  121 (268)
Q Consensus        84 ~v~iw~~~~~~~-----~-~~~~~----~~~v~~v~~~~~~~~l~s~~  121 (268)
                      .|..++......     + ..+..    .+....+.|.|++.+.++.+
T Consensus       106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A          106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            677777654321     1 11221    12346789999998777643

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=95.48  E-value=0.75  Score=36.75  Aligned_cols=145  Identities=17%  Similarity=0.204  Sum_probs=72.3

Q ss_pred             CCCEEEEeeCC-----CeEEEEECCCCCC-CCeEec---CCcccEEEEEEeCCCCcEEEEeeCC-----CeEEEEeCCCC
Q 024372          113 DTHLLLTGGFE-----KILRIFDLNRPDA-PPREVG---NSSGSIRTVAWLHSDQTILSSCTDS-----GGVRLWDARSG  178 (268)
Q Consensus       113 ~~~~l~s~~~d-----~~i~~~d~~~~~~-~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~d-----~~i~iwd~~~~  178 (268)
                      ++++++.|+.+     ..+..||+.+... ......   .....-..+. . ++ .+++.|+.+     +.+.++|+.+.
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~-~-~~-~lyv~GG~~~~~~~~~~~~~d~~~~  138 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT-L-GD-MIYVSGGFDGSRRHTSMERYDPNID  138 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE-E-TT-EEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE-E-CC-EEEEEcccCCCcccceEEEEcCCCC
Confidence            56777777755     4578889865430 012211   1111111222 2 33 444444322     36889999876


Q ss_pred             ceE--EeecCCCCEEEEEECCCCcEEEE-eCC-----CeEEEEeCCCceeeeEEeCCCCce--eeEEcCCCCCEEEeccC
Q 024372          179 KIV--QTLETKSPVTSAEVSRDGRYITT-ADG-----SSVKFWDANHFGLVKGYNMPCNTE--SASLEPKLGNIFIAGGE  248 (268)
Q Consensus       179 ~~~--~~~~~~~~v~~~~~s~~g~~l~~-~~~-----~~v~~wd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~gs~  248 (268)
                      +-.  ..+.....-.+++.. ++++++. +.+     ..+..||..+..-...-..+....  .....  ++++++.|+.
T Consensus       139 ~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~  215 (301)
T 2vpj_A          139 QWSMLGDMQTAREGAGLVVA-SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGF  215 (301)
T ss_dssp             EEEEEEECSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCB
T ss_pred             eEEECCCCCCCcccceEEEE-CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCC
Confidence            532  222221111122222 5555443 322     468899987654332222222211  22222  4788888876


Q ss_pred             C-----CeEEEEECCCCcEE
Q 024372          249 D-----MWVHVFDFHTGEQI  263 (268)
Q Consensus       249 d-----~~i~~wd~~~g~~~  263 (268)
                      +     ..+.+||.++++-.
T Consensus       216 ~~~~~~~~v~~yd~~~~~W~  235 (301)
T 2vpj_A          216 DGTAHLSSVEAYNIRTDSWT  235 (301)
T ss_dssp             CSSSBCCCEEEEETTTTEEE
T ss_pred             CCCcccceEEEEeCCCCcEE
Confidence            4     45899998876543

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=95.33  E-value=0.86  Score=36.53  Aligned_cols=181  Identities=13%  Similarity=0.074  Sum_probs=85.5

Q ss_pred             cEEEEeeC--CCcEEEEeCCCCCeeee--eccCC-eEEEEEECCCCCEEEEeeCC----CeEEEEECCCCCCCCe-EecC
Q 024372           74 LFSASGSA--DFTAKLWDALTGDEKHS--FEHKH-IVRACAFSEDTHLLLTGGFE----KILRIFDLNRPDAPPR-EVGN  143 (268)
Q Consensus        74 ~~l~s~s~--D~~v~iw~~~~~~~~~~--~~~~~-~v~~v~~~~~~~~l~s~~~d----~~i~~~d~~~~~~~~~-~~~~  143 (268)
                      .+++.|+.  ...+.+||..++.=...  ..... .-..+.  .++++++.|+.+    ..+..||+.+.+.... ....
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~   90 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT   90 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence            34455554  35677788766542211  11111 111122  256677777755    6677888765321100 0111


Q ss_pred             CcccEEEEEEeCCCCcEEEEeeCC------CeEEEEeCCCCceEEe--ecCCCCEEEEEECCCCcEEE-EeC--------
Q 024372          144 SSGSIRTVAWLHSDQTILSSCTDS------GGVRLWDARSGKIVQT--LETKSPVTSAEVSRDGRYIT-TAD--------  206 (268)
Q Consensus       144 ~~~~v~~~~~~~~~~~~~~~~~~d------~~i~iwd~~~~~~~~~--~~~~~~v~~~~~s~~g~~l~-~~~--------  206 (268)
                      ....-..+. . ++ .+++.|+.+      +.+.+||+.+.+-...  +.....-.+++. -++++++ ++.        
T Consensus        91 ~r~~~~~~~-~-~~-~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~  166 (306)
T 3ii7_A           91 PRDSLAACA-A-EG-KIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGR  166 (306)
T ss_dssp             CCBSCEEEE-E-TT-EEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCE
T ss_pred             cccceeEEE-E-CC-EEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCccc
Confidence            111111222 2 33 444444432      4588999987753322  211111112222 2555544 331        


Q ss_pred             -CCeEEEEeCCCceeeeEEeCCCCc--eeeEEcCCCCCEEEeccCC-----CeEEEEECCCCcE
Q 024372          207 -GSSVKFWDANHFGLVKGYNMPCNT--ESASLEPKLGNIFIAGGED-----MWVHVFDFHTGEQ  262 (268)
Q Consensus       207 -~~~v~~wd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~gs~d-----~~i~~wd~~~g~~  262 (268)
                       -..+.+||..+..-...-..+...  -.....  .+++++.||.+     ..+.+||..+++-
T Consensus       167 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W  228 (306)
T 3ii7_A          167 VLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEW  228 (306)
T ss_dssp             ECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEE
T ss_pred             ccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcE
Confidence             235888998765433222222221  122222  47888888754     3588999877653

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.13  E-value=0.086  Score=43.67  Aligned_cols=107  Identities=15%  Similarity=0.193  Sum_probs=67.0

Q ss_pred             EEEEeeCCCeEEEEeCCCCceEEeecCC--CCEEEEEE--CC-CCcEEEE--eCCCeEEEEeCCCceeeeEEeCCCCcee
Q 024372          160 ILSSCTDSGGVRLWDARSGKIVQTLETK--SPVTSAEV--SR-DGRYITT--ADGSSVKFWDANHFGLVKGYNMPCNTES  232 (268)
Q Consensus       160 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~--~~v~~~~~--s~-~g~~l~~--~~~~~v~~wd~~~~~~~~~~~~~~~~~~  232 (268)
                      ++..++.||.|.-.|..+|+.+.+++..  .++....-  .+ ++..++.  ..|+.|..+|..++.....+..+.....
T Consensus        12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~   91 (339)
T 2be1_A           12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVST   91 (339)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceec
Confidence            3445567799999999999998887654  23222110  01 3344433  4688999999877644433433321110


Q ss_pred             --eEEc-------C---CCCCEEEeccCCCeEEEEECCCCcEEeec
Q 024372          233 --ASLE-------P---KLGNIFIAGGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       233 --~~~~-------~---~~~~~~~~gs~d~~i~~wd~~~g~~~~~~  266 (268)
                        +...       +   ..+..+++|+.++.++..|.++|+++-.+
T Consensus        92 SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~  137 (339)
T 2be1_A           92 SPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAF  137 (339)
T ss_dssp             CSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEE
T ss_pred             cccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence              1100       0   03667889999999999999999998765

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=95.10  E-value=1  Score=36.03  Aligned_cols=143  Identities=16%  Similarity=0.225  Sum_probs=69.4

Q ss_pred             CCCEEEEeeCC-----CeEEEEECCCCCCCCeEec---CCcccEEEEEEeCCCCcEEEEeeCC----CeEEEEeCCCCce
Q 024372          113 DTHLLLTGGFE-----KILRIFDLNRPDAPPREVG---NSSGSIRTVAWLHSDQTILSSCTDS----GGVRLWDARSGKI  180 (268)
Q Consensus       113 ~~~~l~s~~~d-----~~i~~~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~d----~~i~iwd~~~~~~  180 (268)
                      ++++++.|+.+     ..+..||+.+.+.  ....   .....-..+. . ++..++.+|.+.    +.+.+||+.+.+-
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W--~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W  136 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQW--TSVANMRDRRSTLGAAV-L-NGLLYAVGGFDGSTGLSSVEAYNIKSNEW  136 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEE--EEECCCSSCCBSCEEEE-E-TTEEEEEEEECSSCEEEEEEEEETTTTEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCce--eeCCCCCccccceEEEE-E-CCEEEEEcCCCCCccCceEEEEeCCCCeE
Confidence            56777777754     3477888764321  1111   1111111222 2 343344444332    2578899887653


Q ss_pred             EEe--ecCCCCEEEEEECCCCcEEE-EeC-------CCeEEEEeCCCceeeeEEeCCCCc--eeeEEcCCCCCEEEeccC
Q 024372          181 VQT--LETKSPVTSAEVSRDGRYIT-TAD-------GSSVKFWDANHFGLVKGYNMPCNT--ESASLEPKLGNIFIAGGE  248 (268)
Q Consensus       181 ~~~--~~~~~~v~~~~~s~~g~~l~-~~~-------~~~v~~wd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~gs~  248 (268)
                      ...  +.....-.+++.. ++++++ ++.       -..+..||..+..-...-..+...  ......  ++++++.||.
T Consensus       137 ~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~  213 (302)
T 2xn4_A          137 FHVAPMNTRRSSVGVGVV-GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGH  213 (302)
T ss_dssp             EEECCCSSCCBSCEEEEE-TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCB
T ss_pred             eecCCCCCcccCceEEEE-CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCC
Confidence            322  2211111122222 455544 332       135888998765433222222221  122222  4788888876


Q ss_pred             C-----CeEEEEECCCCcE
Q 024372          249 D-----MWVHVFDFHTGEQ  262 (268)
Q Consensus       249 d-----~~i~~wd~~~g~~  262 (268)
                      +     ..+.+||..+++-
T Consensus       214 ~~~~~~~~~~~yd~~~~~W  232 (302)
T 2xn4_A          214 DGPLVRKSVEVYDPTTNAW  232 (302)
T ss_dssp             SSSSBCCCEEEEETTTTEE
T ss_pred             CCCcccceEEEEeCCCCCE
Confidence            4     3588999877653

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=95.02  E-value=1.3  Score=36.75  Aligned_cols=140  Identities=14%  Similarity=0.105  Sum_probs=75.4

Q ss_pred             EEEEEECCCCC-EEEEeeCCCeEEEEECCCCCC-CCeE----ecCCcccEEEEEEeCC---CCcEEEEeeC-------CC
Q 024372          105 VRACAFSEDTH-LLLTGGFEKILRIFDLNRPDA-PPRE----VGNSSGSIRTVAWLHS---DQTILSSCTD-------SG  168 (268)
Q Consensus       105 v~~v~~~~~~~-~l~s~~~d~~i~~~d~~~~~~-~~~~----~~~~~~~v~~~~~~~~---~~~~~~~~~~-------d~  168 (268)
                      ...++|.|+++ ++++ ...+.|++++...... ....    .....+....+++.|+   ++.+.++-+.       ..
T Consensus        20 P~~i~~~pdG~~l~V~-e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~   98 (353)
T 2g8s_A           20 PWALAFLPDNHGMLIT-LRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGT   98 (353)
T ss_dssp             EEEEEECSTTCCEEEE-ETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEE
T ss_pred             cEEEEEcCCCCEEEEE-eCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCcee
Confidence            46788999998 6654 5678999988532110 0110    1112335678898885   5566555332       23


Q ss_pred             eEEEEeCCCC--c--eEE----eecC----CCCEEEEEECCCCcEEEEeCC--------------CeEEEEeCCCc----
Q 024372          169 GVRLWDARSG--K--IVQ----TLET----KSPVTSAEVSRDGRYITTADG--------------SSVKFWDANHF----  218 (268)
Q Consensus       169 ~i~iwd~~~~--~--~~~----~~~~----~~~v~~~~~s~~g~~l~~~~~--------------~~v~~wd~~~~----  218 (268)
                      .|..|++...  +  ..+    .+..    ......++|.|||.+.++..+              +.|.-.|....    
T Consensus        99 ~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~  178 (353)
T 2g8s_A           99 AVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDD  178 (353)
T ss_dssp             EEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTT
T ss_pred             EEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCC
Confidence            5666666432  1  111    1221    122467999999977665422              24555555321    


Q ss_pred             --------eeeeEEeC-CCCceeeEEcCCCCCEEEe
Q 024372          219 --------GLVKGYNM-PCNTESASLEPKLGNIFIA  245 (268)
Q Consensus       219 --------~~~~~~~~-~~~~~~~~~~~~~~~~~~~  245 (268)
                              .....+.. ..++..+++.+..|+++++
T Consensus       179 npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~  214 (353)
T 2g8s_A          179 NPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLN  214 (353)
T ss_dssp             CTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEE
T ss_pred             CCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEE
Confidence                    01222322 2345677777756777765

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.98  E-value=1.3  Score=40.35  Aligned_cols=191  Identities=8%  Similarity=-0.015  Sum_probs=92.7

Q ss_pred             CCcEEEEEeCC----CCeEEeeCCCCCeEEEe-e-----CccCc-EEEEEecC-CCcEEEEeeCCC------cEEEEeCC
Q 024372           30 DGFFLVSASKD----SSPMLRNGETGDWIGTF-E-----GHKGA-VWSCCLDA-NALFSASGSADF------TAKLWDAL   91 (268)
Q Consensus        30 dg~~l~s~s~d----~~i~iw~~~~~~~~~~~-~-----~h~~~-V~~~~~~~-~~~~l~s~s~D~------~v~iw~~~   91 (268)
                      ++.+++.|+.+    ..+.++|..++++...- .     ..... -.+++..+ ++.+++.||.++      .+.+||..
T Consensus       397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~  476 (695)
T 2zwa_A          397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMK  476 (695)
T ss_dssp             SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETT
T ss_pred             CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCC
Confidence            55677777654    35667888888765432 1     11111 11222232 677777777543      46677776


Q ss_pred             CCCeeee--eccCCeEEEEEECCCCCEEEEeeCCC--eEEEEECCCCCCCCeE----ecCCcccEEEEEEeCCCCcEEEE
Q 024372           92 TGDEKHS--FEHKHIVRACAFSEDTHLLLTGGFEK--ILRIFDLNRPDAPPRE----VGNSSGSIRTVAWLHSDQTILSS  163 (268)
Q Consensus        92 ~~~~~~~--~~~~~~v~~v~~~~~~~~l~s~~~d~--~i~~~d~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~~  163 (268)
                      ++.=...  ...+..-.+++.-.++++++.|+.++  .+.+||+.+.......    .......-.++.+....+.+++.
T Consensus       477 t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~  556 (695)
T 2zwa_A          477 TREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIIL  556 (695)
T ss_dssp             TTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEE
T ss_pred             CCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEE
Confidence            6432111  11111112233323788888888655  5788887653211000    00111111223444442445444


Q ss_pred             eeC-------CCeEEEEeCCCCce-----EEee---cCCCC-EEEEEECCCCcEEE-EeC--------CCeEEEEeCCCc
Q 024372          164 CTD-------SGGVRLWDARSGKI-----VQTL---ETKSP-VTSAEVSRDGRYIT-TAD--------GSSVKFWDANHF  218 (268)
Q Consensus       164 ~~~-------d~~i~iwd~~~~~~-----~~~~---~~~~~-v~~~~~s~~g~~l~-~~~--------~~~v~~wd~~~~  218 (268)
                      |+.       -+.+.+||+.+.+-     ...+   ..... -.++....++++++ +|.        ...|.+||+.+.
T Consensus       557 GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~  636 (695)
T 2zwa_A          557 GGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSE  636 (695)
T ss_dssp             CCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTT
T ss_pred             CCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCC
Confidence            433       14688999988761     1111   11111 11333334355544 442        245889998765


Q ss_pred             ee
Q 024372          219 GL  220 (268)
Q Consensus       219 ~~  220 (268)
                      .-
T Consensus       637 ~W  638 (695)
T 2zwa_A          637 TL  638 (695)
T ss_dssp             EE
T ss_pred             eE
Confidence            43

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=94.88  E-value=0.84  Score=38.95  Aligned_cols=103  Identities=12%  Similarity=0.206  Sum_probs=69.1

Q ss_pred             CCCCcEEEEeeCCCeEEEEeCCCCceEEeecCC-----CCEEEEEECCCCcEEEEeCCCeEEEEeCC-Cc---------e
Q 024372          155 HSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-----SPVTSAEVSRDGRYITTADGSSVKFWDAN-HF---------G  219 (268)
Q Consensus       155 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-----~~v~~~~~s~~g~~l~~~~~~~v~~wd~~-~~---------~  219 (268)
                      .++..++++ . ++.||.-++..+...+.+...     ..+..+.++|+|++|+..++..|.+-.+- ..         .
T Consensus        30 ~n~t~i~~a-~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~  107 (452)
T 3pbp_A           30 QNGTRIVFI-Q-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQD  107 (452)
T ss_dssp             TTTTEEEEE-E-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHH
T ss_pred             cCCCEEEEE-E-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCccccccc
Confidence            444444433 3 388998888754444444322     25778999999999998888899988874 11         0


Q ss_pred             --eeeEEeCC-------CCceeeEEcCC--CCCEEEeccCCCeEEEEECCC
Q 024372          220 --LVKGYNMP-------CNTESASLEPK--LGNIFIAGGEDMWVHVFDFHT  259 (268)
Q Consensus       220 --~~~~~~~~-------~~~~~~~~~~~--~~~~~~~gs~d~~i~~wd~~~  259 (268)
                        ..+.|+..       ..+..+.|+|-  .+..|++=..|+.||+||+..
T Consensus       108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~  158 (452)
T 3pbp_A          108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN  158 (452)
T ss_dssp             TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred             ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence              12345542       23556667764  356899999999999999975

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=94.56  E-value=1.6  Score=36.10  Aligned_cols=140  Identities=9%  Similarity=-0.028  Sum_probs=76.4

Q ss_pred             eEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEe---cCCcccEEEEEEeCC---CCcEEEEeeC---C----CeE
Q 024372          104 IVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV---GNSSGSIRTVAWLHS---DQTILSSCTD---S----GGV  170 (268)
Q Consensus       104 ~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~---~~~~~~v~~~~~~~~---~~~~~~~~~~---d----~~i  170 (268)
                      ....++|.|+++++++ ..++.|+++|. .+.......   .........+++.|+   ++.++++-+.   +    +.|
T Consensus        30 ~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v  107 (354)
T 3a9g_A           30 VPWSIAPLGGGRYLVT-ERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV  107 (354)
T ss_dssp             CEEEEEEEETTEEEEE-ETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred             CCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence            3467889999975554 55688988873 222011110   112245678898886   5666655442   2    567


Q ss_pred             EEEeCCCC-------ceE-EeecC--CCCEEEEEECCCCcEEEEeCC--------------CeEEEEeCCCce-------
Q 024372          171 RLWDARSG-------KIV-QTLET--KSPVTSAEVSRDGRYITTADG--------------SSVKFWDANHFG-------  219 (268)
Q Consensus       171 ~iwd~~~~-------~~~-~~~~~--~~~v~~~~~s~~g~~l~~~~~--------------~~v~~wd~~~~~-------  219 (268)
                      ..|+....       +.+ ..+..  ......++|.|||++.++..+              +.|.-.|....-       
T Consensus       108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~  187 (354)
T 3a9g_A          108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFP  187 (354)
T ss_dssp             EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSST
T ss_pred             EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCC
Confidence            77776543       111 22321  123567999999987765321              244444443210       


Q ss_pred             eeeEEeC-CCCceeeEEcCCCCCEEEe
Q 024372          220 LVKGYNM-PCNTESASLEPKLGNIFIA  245 (268)
Q Consensus       220 ~~~~~~~-~~~~~~~~~~~~~~~~~~~  245 (268)
                      ....+.. ..++..+++.+..++++++
T Consensus       188 ~~~i~a~G~rnp~Gla~d~~~g~l~v~  214 (354)
T 3a9g_A          188 NSPIWSYGHRNPQGIDWHRASGVMVAT  214 (354)
T ss_dssp             TCCEEEECCSCCCEEEECTTTCCEEEE
T ss_pred             CCcEEEEccCCcceEEEeCCCCCEEEE
Confidence            0112221 2345677788756787776

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=94.10  E-value=1.6  Score=33.82  Aligned_cols=136  Identities=9%  Similarity=-0.042  Sum_probs=72.7

Q ss_pred             cEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeeccCCeE--------EEEEECCCCCEEEEeeCCCeEEEEECCCC
Q 024372           63 AVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIV--------RACAFSEDTHLLLTGGFEKILRIFDLNRP  134 (268)
Q Consensus        63 ~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v--------~~v~~~~~~~~l~s~~~d~~i~~~d~~~~  134 (268)
                      .+..++|+|++.+.+.  .++.++--+..+.....-+.....|        ..+-|.|++.+.++  .|+.|.-++..+.
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~  117 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQS  117 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCS
T ss_pred             cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcC
Confidence            5678999999886554  5666555554332221111112223        67889999987766  5699888875322


Q ss_pred             CCC-----CeEecC-CcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceE------Eeec-C-CCCEEEEEECCCCc
Q 024372          135 DAP-----PREVGN-SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIV------QTLE-T-KSPVTSAEVSRDGR  200 (268)
Q Consensus       135 ~~~-----~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~------~~~~-~-~~~v~~~~~s~~g~  200 (268)
                      ...     ...++. -=..+..|.+.|++ .+.+..  |+.+.-+-..++...      ..+. . -....-+.|+|+|.
T Consensus       118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p~G-~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~  194 (236)
T 1tl2_A          118 DTDNWIARATEVGSGGWSGFKFLFFHPNG-YLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGT  194 (236)
T ss_dssp             TTCCHHHHSEEEECSSGGGEEEEEECTTS-CEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSC
T ss_pred             CCCceeccccEeccCCCCceEEEEECCCc-eEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCc
Confidence            111     011111 11356777777765 455444  466544433322211      1111 1 11234466888888


Q ss_pred             EEEEe
Q 024372          201 YITTA  205 (268)
Q Consensus       201 ~l~~~  205 (268)
                      +.+..
T Consensus       195 l~~v~  199 (236)
T 1tl2_A          195 LFGVQ  199 (236)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            77666

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=93.48  E-value=2.4  Score=33.95  Aligned_cols=182  Identities=14%  Similarity=0.187  Sum_probs=84.5

Q ss_pred             CCcEEEEEeC----C-----CCeEEeeCCCCCeEEEeeCcc--CcEEEEEecCCCcEEEEeeCC-----CcEEEEeCCCC
Q 024372           30 DGFFLVSASK----D-----SSPMLRNGETGDWIGTFEGHK--GAVWSCCLDANALFSASGSAD-----FTAKLWDALTG   93 (268)
Q Consensus        30 dg~~l~s~s~----d-----~~i~iw~~~~~~~~~~~~~h~--~~V~~~~~~~~~~~l~s~s~D-----~~v~iw~~~~~   93 (268)
                      ++.+++.|+.    +     ..+.++|..+.++...-.-..  ..-..+.+  ++.+++.|+.+     ..+.++|..+.
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~  147 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD  147 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence            4556666665    2     356778888876543211111  11111222  56666666644     35777887665


Q ss_pred             Ceeee--eccCCe-EEEEEECCCCCEEEEeeCC-----CeEEEEECCCCCCCC-eEecCCcccEEEEEEeCCCCcEEEEe
Q 024372           94 DEKHS--FEHKHI-VRACAFSEDTHLLLTGGFE-----KILRIFDLNRPDAPP-REVGNSSGSIRTVAWLHSDQTILSSC  164 (268)
Q Consensus        94 ~~~~~--~~~~~~-v~~v~~~~~~~~l~s~~~d-----~~i~~~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~  164 (268)
                      .=...  ...... -..+.+  ++++++.|+.+     ..+..||+.+..-.. .........-..+. . ++ .+++.|
T Consensus       148 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~-~~-~iyv~G  222 (308)
T 1zgk_A          148 EWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCV-L-HN-CIYAAG  222 (308)
T ss_dssp             EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-E-TT-EEEEEC
T ss_pred             eEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEE-E-CC-EEEEEe
Confidence            42221  111111 112222  56777777754     457788876432110 00111111112222 2 33 444444


Q ss_pred             eCC-----CeEEEEeCCCCceEEe--ecCCCCEEEEEECCCCcEEE-EeCC-----CeEEEEeCCCce
Q 024372          165 TDS-----GGVRLWDARSGKIVQT--LETKSPVTSAEVSRDGRYIT-TADG-----SSVKFWDANHFG  219 (268)
Q Consensus       165 ~~d-----~~i~iwd~~~~~~~~~--~~~~~~v~~~~~s~~g~~l~-~~~~-----~~v~~wd~~~~~  219 (268)
                      +.+     +.+.+||+.+.+=...  +.....-.+++.. ++++++ ++.+     ..+.+||+++.+
T Consensus       223 G~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          223 GYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH-QGRIYVLGGYDGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             CBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE-CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence            332     4689999987653322  1111111122222 455544 4422     357788886643

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=93.25  E-value=2.7  Score=33.78  Aligned_cols=177  Identities=12%  Similarity=0.077  Sum_probs=83.5

Q ss_pred             EEEeeCCCcEEEEeCCCCCeee-eeccC-CeEEEEEECCCCCEEEEeeC-----C------CeEEEEECCCCCCCCeEec
Q 024372           76 SASGSADFTAKLWDALTGDEKH-SFEHK-HIVRACAFSEDTHLLLTGGF-----E------KILRIFDLNRPDAPPREVG  142 (268)
Q Consensus        76 l~s~s~D~~v~iw~~~~~~~~~-~~~~~-~~v~~v~~~~~~~~l~s~~~-----d------~~i~~~d~~~~~~~~~~~~  142 (268)
                      ++.|+  ..+.+||..++.=.. ..+.+ ..........++++++.|+.     .      ..+..||+.+.+-  ....
T Consensus         8 ~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W--~~~~   83 (315)
T 4asc_A            8 FMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW--LGMP   83 (315)
T ss_dssp             EEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEE--EECC
T ss_pred             EEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeE--EECC
Confidence            34454  467888887765322 11111 11222233457788888873     1      1256778754321  1111


Q ss_pred             ---CCcccEEEEEEeCCCCcEEEEeeC--------CCeEEEEeCCCCceEEe--ecCCCCEEEEEECCCCcEE-EEeC-C
Q 024372          143 ---NSSGSIRTVAWLHSDQTILSSCTD--------SGGVRLWDARSGKIVQT--LETKSPVTSAEVSRDGRYI-TTAD-G  207 (268)
Q Consensus       143 ---~~~~~v~~~~~~~~~~~~~~~~~~--------d~~i~iwd~~~~~~~~~--~~~~~~v~~~~~s~~g~~l-~~~~-~  207 (268)
                         .....- +++.. ++ .+++.|+.        -+.+.++|+.+.+=...  +.....-.+++. -+++++ +++. +
T Consensus        84 ~~p~~r~~~-~~~~~-~~-~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~  159 (315)
T 4asc_A           84 PLPSPRCLF-GLGEA-LN-SIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGS  159 (315)
T ss_dssp             CBSSCEESC-EEEEE-TT-EEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCT
T ss_pred             CCCcchhce-eEEEE-CC-EEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCC
Confidence               111111 11222 33 44444432        14588999987653221  111111112223 344544 4443 1


Q ss_pred             -----CeEEEEeCCCceeeeEEeCCCCc--eeeEEcCCCCCEEEeccCCC-----eEEEEECCCCcE
Q 024372          208 -----SSVKFWDANHFGLVKGYNMPCNT--ESASLEPKLGNIFIAGGEDM-----WVHVFDFHTGEQ  262 (268)
Q Consensus       208 -----~~v~~wd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~gs~d~-----~i~~wd~~~g~~  262 (268)
                           ..+.+||..+..-...-..+...  -.....  ++++++.||.++     .+.+||..+++-
T Consensus       160 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W  224 (315)
T 4asc_A          160 DRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKW  224 (315)
T ss_dssp             TSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEE
T ss_pred             CCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeE
Confidence                 36889998765332222222221  122222  478888887643     588999877653

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=92.75  E-value=2.7  Score=32.50  Aligned_cols=103  Identities=14%  Similarity=0.016  Sum_probs=60.2

Q ss_pred             CCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCe---E---EEee--CccCcEEEEEecCCCcEEEEeeCCCcEEEE
Q 024372           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW---I---GTFE--GHKGAVWSCCLDANALFSASGSADFTAKLW   88 (268)
Q Consensus        17 ~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~---~---~~~~--~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw   88 (268)
                      ..+..++|+|   +|.+-+.  .++.+.--+..+.+.   .   ..+.  +-.. -.++.|.+++.+.++  .|+.|+-+
T Consensus        41 ~~~~~laf~P---~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~  112 (236)
T 1tl2_A           41 SNFKFLFLSP---GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKA  112 (236)
T ss_dssp             TTCSEEEECT---TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEE
T ss_pred             ccceeEEECC---CccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEe
Confidence            4677999996   7875554  666654444433211   1   1111  1111 367789999987666  57999888


Q ss_pred             eCCCCCeee------eecc--CCeEEEEEECCCCCEEEEeeCCCeEEEE
Q 024372           89 DALTGDEKH------SFEH--KHIVRACAFSEDTHLLLTGGFEKILRIF  129 (268)
Q Consensus        89 ~~~~~~~~~------~~~~--~~~v~~v~~~~~~~~l~s~~~d~~i~~~  129 (268)
                      +.-+.....      .+..  =..+..|.|.|+|.+.+..  |+.+...
T Consensus       113 ~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~  159 (236)
T 1tl2_A          113 SPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKA  159 (236)
T ss_dssp             SCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEE
T ss_pred             CCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEec
Confidence            763322211      1101  0356889999999877665  7775443

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=92.66  E-value=7.9  Score=37.62  Aligned_cols=202  Identities=14%  Similarity=0.090  Sum_probs=101.0

Q ss_pred             EEEEEeCCCCeEEeeCCCCCeEEEee-CccCcEEEEEecCC------CcEEEEeeC-CCcEEEEeCCCCCeeeeecc--C
Q 024372           33 FLVSASKDSSPMLRNGETGDWIGTFE-GHKGAVWSCCLDAN------ALFSASGSA-DFTAKLWDALTGDEKHSFEH--K  102 (268)
Q Consensus        33 ~l~s~s~d~~i~iw~~~~~~~~~~~~-~h~~~V~~~~~~~~------~~~l~s~s~-D~~v~iw~~~~~~~~~~~~~--~  102 (268)
                      +++.++ ++.+.++....+++...-+ .-.+.|.++++.+.      +.+++.|.+ |++++|+.+.+.+.+.....  .
T Consensus       525 ~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~  603 (1158)
T 3ei3_A          525 QVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGE  603 (1158)
T ss_dssp             EEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSS
T ss_pred             EEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCC
Confidence            455554 5667666665554322111 12457899998753      468888887 99999999987665544332  1


Q ss_pred             CeEEEEEEC--CCCCEEEEeeCCCeEEEEECCC--CCCCCe--EecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCC
Q 024372          103 HIVRACAFS--EDTHLLLTGGFEKILRIFDLNR--PDAPPR--EVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR  176 (268)
Q Consensus       103 ~~v~~v~~~--~~~~~l~s~~~d~~i~~~d~~~--~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~  176 (268)
                      ....++.+.  ....+|..|-.||.+..+.+..  +...-.  ...+ ..++.-..+...+..-+.++++ +-..++-.+
T Consensus       604 ~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s~-rp~liy~~~  681 (1158)
T 3ei3_A          604 IIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACSD-RPTVIYSSN  681 (1158)
T ss_dssp             CCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEESS-SCEEEEESS
T ss_pred             CCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEECC-CCEEEEEcC
Confidence            233333322  2335677888999876665532  211101  1111 1233333332233332333333 555555443


Q ss_pred             CCce-EEeecCCCCEEEEEECCCC--cEEEEeCCCeEEEEeCCCce--eeeEEeCCCCceeeEEcCC
Q 024372          177 SGKI-VQTLETKSPVTSAEVSRDG--RYITTADGSSVKFWDANHFG--LVKGYNMPCNTESASLEPK  238 (268)
Q Consensus       177 ~~~~-~~~~~~~~~v~~~~~s~~g--~~l~~~~~~~v~~wd~~~~~--~~~~~~~~~~~~~~~~~~~  238 (268)
                       ++. +..+....--....|+...  .-++..+++.++|..+.+..  .+++++....+..++.++.
T Consensus       682 -~~l~~s~l~~~~v~~~~~F~se~~~~g~v~~~~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~  747 (1158)
T 3ei3_A          682 -HKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEV  747 (1158)
T ss_dssp             -SSEEEEEBSSSCCCEEEEECCSSSTTEEEEECSSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGG
T ss_pred             -CceEEeccChHHhceEeccCcccCCCcEEEEcCCceEEEEecccCCeeEEEEeCCCCceEEEEcCC
Confidence             332 2222222112233454321  22334445568887765432  2444555555566666664

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=92.08  E-value=1.9  Score=38.23  Aligned_cols=99  Identities=11%  Similarity=0.170  Sum_probs=64.1

Q ss_pred             EEEEEECCCCCEEEEe-eCCCeEEEEECCC------CCC-C-----CeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEE
Q 024372          105 VRACAFSEDTHLLLTG-GFEKILRIFDLNR------PDA-P-----PREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR  171 (268)
Q Consensus       105 v~~v~~~~~~~~l~s~-~~d~~i~~~d~~~------~~~-~-----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~  171 (268)
                      ...+..+|||+.++.+ --+.++.++|.+.      .+. .     ..+..--. .-...+|.+++ +..++..-|.+|-
T Consensus       325 PHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl-GPlHt~Fd~~G-~aYTtlfidSqvv  402 (638)
T 3sbq_A          325 PHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL-GPLHTTFDGRG-NAYTTLFIDSQVV  402 (638)
T ss_dssp             CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS-CEEEEEECSSS-EEEEEETTTTEEE
T ss_pred             CcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC-cccEEEECCCC-ceEeeeeecceEE
Confidence            4467789999977765 4778899999762      111 0     01111112 23456777766 7778888889999


Q ss_pred             EEeCCCC----------ceEEeecCCCCEEEEEE------CCCCcEEEEe
Q 024372          172 LWDARSG----------KIVQTLETKSPVTSAEV------SRDGRYITTA  205 (268)
Q Consensus       172 iwd~~~~----------~~~~~~~~~~~v~~~~~------s~~g~~l~~~  205 (268)
                      -|++.+.          ..+..+..+..+--+..      .|+|++|++.
T Consensus       403 kWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~l  452 (638)
T 3sbq_A          403 KWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVAL  452 (638)
T ss_dssp             EEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEE
T ss_pred             EEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEe
Confidence            9999753          35566666555555544      5788888764

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=91.59  E-value=2.5  Score=34.59  Aligned_cols=92  Identities=11%  Similarity=0.101  Sum_probs=42.4

Q ss_pred             CeEEEEeCCCCce--EEeecCCCCE-EEEEECCCCcE-EEEeC------CCeEEEEeC--CCc--eeeeEEeCCCCcee-
Q 024372          168 GGVRLWDARSGKI--VQTLETKSPV-TSAEVSRDGRY-ITTAD------GSSVKFWDA--NHF--GLVKGYNMPCNTES-  232 (268)
Q Consensus       168 ~~i~iwd~~~~~~--~~~~~~~~~v-~~~~~s~~g~~-l~~~~------~~~v~~wd~--~~~--~~~~~~~~~~~~~~-  232 (268)
                      +.+.+||+.+.+=  +..+...... .+++.. ++++ ++++.      ...+..+|+  .+.  ..+.....+..... 
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~  246 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGG  246 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSC
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccc
Confidence            5789999987653  2233221111 233333 4444 44432      235667776  332  22222222211111 


Q ss_pred             eEEcCCCCCEEEeccCC----------------------CeEEEEECCCCc
Q 024372          233 ASLEPKLGNIFIAGGED----------------------MWVHVFDFHTGE  261 (268)
Q Consensus       233 ~~~~~~~~~~~~~gs~d----------------------~~i~~wd~~~g~  261 (268)
                      .+... ++++++.||.+                      ..+.+||..+++
T Consensus       247 ~~~~~-~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~  296 (357)
T 2uvk_A          247 FAGIS-NDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGK  296 (357)
T ss_dssp             EEEEE-TTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---
T ss_pred             eEEEE-CCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCc
Confidence            12222 47888888742                      247889987654

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=90.53  E-value=6.5  Score=32.47  Aligned_cols=147  Identities=12%  Similarity=0.063  Sum_probs=80.7

Q ss_pred             EeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeee--e-----ccCCeEEEEEECCC---CCEEEEe---eC
Q 024372           56 TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHS--F-----EHKHIVRACAFSED---THLLLTG---GF  122 (268)
Q Consensus        56 ~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~--~-----~~~~~v~~v~~~~~---~~~l~s~---~~  122 (268)
                      .+...-..-+.++|.|++.++++--..|.|++++...+.....  +     ........++++|+   +..|+..   ..
T Consensus        26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~  105 (347)
T 3das_A           26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS  105 (347)
T ss_dssp             EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred             EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence            3333334567899999999888776689999988655543221  1     12335778999995   3444432   23


Q ss_pred             CCeEEEEECCCCC-----C-CCe----Ee---cCCcccEEEEEEeCCCCcEEEEee------------CCCeEEEEeCCC
Q 024372          123 EKILRIFDLNRPD-----A-PPR----EV---GNSSGSIRTVAWLHSDQTILSSCT------------DSGGVRLWDARS  177 (268)
Q Consensus       123 d~~i~~~d~~~~~-----~-~~~----~~---~~~~~~v~~~~~~~~~~~~~~~~~------------~d~~i~iwd~~~  177 (268)
                      ++.|.-|.+....     . ..+    ..   ..|  ....+.|.+++..+++.|.            ..+.|.-.+...
T Consensus       106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H--~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG  183 (347)
T 3das_A          106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIH--NGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDG  183 (347)
T ss_dssp             SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSC--CCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTS
T ss_pred             CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCc--cCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCC
Confidence            4455556554311     0 011    11   122  2345788887754454442            123444445432


Q ss_pred             C---------ceEEeecCCCCEEEEEECCCCcEEEEe
Q 024372          178 G---------KIVQTLETKSPVTSAEVSRDGRYITTA  205 (268)
Q Consensus       178 ~---------~~~~~~~~~~~v~~~~~s~~g~~l~~~  205 (268)
                      .         ..+....+ .....++|+|+|.+.++-
T Consensus       184 ~ip~~nPf~~~~i~a~G~-RNp~Gla~dp~G~L~~~d  219 (347)
T 3das_A          184 EPAPGNPFPGSPVYSYGH-RNVQGLAWDDKQRLFASE  219 (347)
T ss_dssp             SBCTTCSSTTCCEEEBCC-SBCCEEEECTTCCEEEEE
T ss_pred             CccCCCCCCCCeEEeeCC-CCcceEEECCCCCEEEEe
Confidence            1         12222222 345689999999887764

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=89.72  E-value=7.6  Score=32.00  Aligned_cols=222  Identities=12%  Similarity=0.067  Sum_probs=115.7

Q ss_pred             CCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC-eEEEee---CccCcEEEEEecCC----CcEEEEeeC---C---
Q 024372           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD-WIGTFE---GHKGAVWSCCLDAN----ALFSASGSA---D---   82 (268)
Q Consensus        17 ~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~-~~~~~~---~h~~~V~~~~~~~~----~~~l~s~s~---D---   82 (268)
                      ..-.+++|.|   ||.++ .+..++.|++++ .+++ .+..+.   ........++++|+    +.+.++-+.   +   
T Consensus        29 ~~P~~ia~~p---dG~l~-V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~  103 (354)
T 3a9g_A           29 EVPWSIAPLG---GGRYL-VTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI  103 (354)
T ss_dssp             SCEEEEEEEE---TTEEE-EEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred             CCCeEEEEcC---CCeEE-EEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence            3456899985   88755 456678888886 3454 222221   12346788999997    544444332   3   


Q ss_pred             -CcEEEEeCCCCC--e-----e-eeec--cCCeEEEEEECCCCCEEEEeeC-------------CCeEEEEECCCCC---
Q 024372           83 -FTAKLWDALTGD--E-----K-HSFE--HKHIVRACAFSEDTHLLLTGGF-------------EKILRIFDLNRPD---  135 (268)
Q Consensus        83 -~~v~iw~~~~~~--~-----~-~~~~--~~~~v~~v~~~~~~~~l~s~~~-------------d~~i~~~d~~~~~---  135 (268)
                       ..|..|+.....  .     + ..+.  ..+....+.|.|++.+.++.+.             .+.|..++....-   
T Consensus       104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~  183 (354)
T 3a9g_A          104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPAD  183 (354)
T ss_dssp             EEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTT
T ss_pred             ceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCC
Confidence             456667665431  1     1 1122  1123456899999987776432             2455555543210   


Q ss_pred             ----CCCeEecCCcccEEEEEEeCCCCcEEEEeeCCC---eEEEEeCCCCc------------------eEEee-cCCCC
Q 024372          136 ----APPREVGNSSGSIRTVAWLHSDQTILSSCTDSG---GVRLWDARSGK------------------IVQTL-ETKSP  189 (268)
Q Consensus       136 ----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~---~i~iwd~~~~~------------------~~~~~-~~~~~  189 (268)
                          ........+.. ...++|.++.+.++++-...+   .|.+-.  .+.                  .+..+ ..+..
T Consensus       184 npf~~~~i~a~G~rn-p~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~a  260 (354)
T 3a9g_A          184 NPFPNSPIWSYGHRN-PQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGSETWA  260 (354)
T ss_dssp             SSSTTCCEEEECCSC-CCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTTCCCC
T ss_pred             CCCCCCcEEEEccCC-cceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCCCCcC
Confidence                00111112222 245788875555655432221   243322  221                  22333 23445


Q ss_pred             EEEEEEC-------CCCcEEEEe-CCCeEEEEeCCCc-eee--eEEeC--CCCceeeEEcCCCCCEEEecc
Q 024372          190 VTSAEVS-------RDGRYITTA-DGSSVKFWDANHF-GLV--KGYNM--PCNTESASLEPKLGNIFIAGG  247 (268)
Q Consensus       190 v~~~~~s-------~~g~~l~~~-~~~~v~~wd~~~~-~~~--~~~~~--~~~~~~~~~~~~~~~~~~~gs  247 (268)
                      ...+++-       .+|+++++. ..+.|...++... ...  ..+..  ...+..+.+.+ +|.++++..
T Consensus       261 p~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~p-DG~lyv~~~  330 (354)
T 3a9g_A          261 PSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDD-DGGILISTS  330 (354)
T ss_dssp             EEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECT-TSCEEEEEC
T ss_pred             CcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECC-CCcEEEEEe
Confidence            7788883       567777665 4567888887653 222  22221  12344555555 577776653

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=89.69  E-value=9.1  Score=32.84  Aligned_cols=101  Identities=13%  Similarity=0.062  Sum_probs=57.5

Q ss_pred             eEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCC-eEec------CCcccEEEEEEeCC---CCcEEEEeeC-------
Q 024372          104 IVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP-REVG------NSSGSIRTVAWLHS---DQTILSSCTD-------  166 (268)
Q Consensus       104 ~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~-~~~~------~~~~~v~~~~~~~~---~~~~~~~~~~-------  166 (268)
                      ....++|.|+++++++-...+.|++++...+.... ..+.      ...+....+++.|+   ++.+.++-+.       
T Consensus        28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~  107 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD  107 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred             CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence            34578999999977765444568888754332111 1111      12345678999885   5666555432       


Q ss_pred             -----CCeEEEEeCCCC-------ceE-EeecC--CCCEEEEEECCCCcEEEE
Q 024372          167 -----SGGVRLWDARSG-------KIV-QTLET--KSPVTSAEVSRDGRYITT  204 (268)
Q Consensus       167 -----d~~i~iwd~~~~-------~~~-~~~~~--~~~v~~~~~s~~g~~l~~  204 (268)
                           ...|.-+++..+       +.+ ..+..  ......++|.|||++.++
T Consensus       108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~  160 (454)
T 1cru_A          108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYT  160 (454)
T ss_dssp             CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEE
T ss_pred             cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEE
Confidence                 134555554321       112 12322  235789999999987665

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=89.61  E-value=12  Score=34.07  Aligned_cols=190  Identities=12%  Similarity=0.082  Sum_probs=89.5

Q ss_pred             CCCcEEEEeeCC----CcEEEEeCCCCCeeeee-c-------cCCe-EEEEEECCCCCEEEEeeCCC------eEEEEEC
Q 024372           71 ANALFSASGSAD----FTAKLWDALTGDEKHSF-E-------HKHI-VRACAFSEDTHLLLTGGFEK------ILRIFDL  131 (268)
Q Consensus        71 ~~~~~l~s~s~D----~~v~iw~~~~~~~~~~~-~-------~~~~-v~~v~~~~~~~~l~s~~~d~------~i~~~d~  131 (268)
                      .++.+++.||.+    ..+.++|..++.-.... .       .... -..+.+..++++++.|+.++      .+.+||+
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            455666677653    35777787765422211 1       1111 12233322677778877543      4667787


Q ss_pred             CCCCCCC-eEecCCcccEEEEEEeCCCCcEEEEeeCCC-eEEEEeCCCCceEEee-----c-CCCCEEEEEECCC-CcEE
Q 024372          132 NRPDAPP-REVGNSSGSIRTVAWLHSDQTILSSCTDSG-GVRLWDARSGKIVQTL-----E-TKSPVTSAEVSRD-GRYI  202 (268)
Q Consensus       132 ~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~-~i~iwd~~~~~~~~~~-----~-~~~~v~~~~~s~~-g~~l  202 (268)
                      .+..... ......... .+.+...++..++.+|.+.. .+.+||+.+.+=...-     . .......+.+..+ ++++
T Consensus       476 ~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iy  554 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGI  554 (695)
T ss_dssp             TTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEE
T ss_pred             CCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEE
Confidence            5432100 000011111 12222234444444433222 6899999876532211     1 1111223444554 5554


Q ss_pred             E-EeC--C-----CeEEEEeCCCce------eeeEEeC---CCCceeeEEcCCCCCEEEeccCC--------CeEEEEEC
Q 024372          203 T-TAD--G-----SSVKFWDANHFG------LVKGYNM---PCNTESASLEPKLGNIFIAGGED--------MWVHVFDF  257 (268)
Q Consensus       203 ~-~~~--~-----~~v~~wd~~~~~------~~~~~~~---~~~~~~~~~~~~~~~~~~~gs~d--------~~i~~wd~  257 (268)
                      + +|.  +     ..+..||+.+..      ....-..   +.......... ++++++.||.+        ..|.+||.
T Consensus       555 v~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~  633 (695)
T 2zwa_A          555 ILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYIT-PRKLLIVGGTSPSGLFDRTNSIISLDP  633 (695)
T ss_dssp             EECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEE-TTEEEEECCBCSSCCCCTTTSEEEEET
T ss_pred             EECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeC-CCEEEEECCccCCCCCCCCCeEEEEEC
Confidence            4 432  2     358889987654      1111111   11111222222 37888888743        35999998


Q ss_pred             CCCcE
Q 024372          258 HTGEQ  262 (268)
Q Consensus       258 ~~g~~  262 (268)
                      .+++-
T Consensus       634 ~t~~W  638 (695)
T 2zwa_A          634 LSETL  638 (695)
T ss_dssp             TTTEE
T ss_pred             CCCeE
Confidence            87653

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=89.53  E-value=7.8  Score=31.87  Aligned_cols=222  Identities=11%  Similarity=0.025  Sum_probs=110.2

Q ss_pred             CeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeE---EEe----eCccCcEEEEEecCC----CcEEEEeeC-----
Q 024372           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWI---GTF----EGHKGAVWSCCLDAN----ALFSASGSA-----   81 (268)
Q Consensus        18 ~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~---~~~----~~h~~~V~~~~~~~~----~~~l~s~s~-----   81 (268)
                      .-.+++|.|   +|..|..+...+.|++++. .++..   ..+    ....+....++++|+    +.+.++-..     
T Consensus        19 ~P~~i~~~p---dG~~l~V~e~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g   94 (353)
T 2g8s_A           19 HPWALAFLP---DNHGMLITLRGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDG   94 (353)
T ss_dssp             SEEEEEECS---TTCCEEEEETTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSS
T ss_pred             CcEEEEEcC---CCCEEEEEeCCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCC
Confidence            456899985   8882444567788888874 33321   111    112345688999995    544444322     


Q ss_pred             --CCcEEEEeCCCCC----eeee----ec----cCCeEEEEEECCCCCEEEEeeC-------------CCeEEEEECCCC
Q 024372           82 --DFTAKLWDALTGD----EKHS----FE----HKHIVRACAFSEDTHLLLTGGF-------------EKILRIFDLNRP  134 (268)
Q Consensus        82 --D~~v~iw~~~~~~----~~~~----~~----~~~~v~~v~~~~~~~~l~s~~~-------------d~~i~~~d~~~~  134 (268)
                        ...|..++.....    ....    +.    ..+.-..+.|.|++.+.++.+.             .+.|.-++....
T Consensus        95 ~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~  174 (353)
T 2g8s_A           95 KAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE  174 (353)
T ss_dssp             CEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred             CceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence              2245555554321    1111    11    1122456899999976665433             245666675421


Q ss_pred             C------------CCCeEecCCcccEEEEEEeCCCCcEEEEeeC-CCeEEEEeCCCCc----------------------
Q 024372          135 D------------APPREVGNSSGSIRTVAWLHSDQTILSSCTD-SGGVRLWDARSGK----------------------  179 (268)
Q Consensus       135 ~------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-d~~i~iwd~~~~~----------------------  179 (268)
                      -            ........+. -...++|.+..+.++++-.. ++.=.|.-+..+.                      
T Consensus       175 ~p~~npf~~~~~~~~~i~a~G~r-np~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~  253 (353)
T 2g8s_A          175 IPDDNPFIKESGVRAEIWSYGIR-NPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAK  253 (353)
T ss_dssp             CCTTCTTTTSTTSCTTEEEECCS-EEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCC
T ss_pred             CCCCCCCcCCCCCCccEEEEcCc-CccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCccc
Confidence            0            0111111222 24567888855566554322 1111222122211                      


Q ss_pred             ---------eEEeecCCCCEEEEEECC-------CCcEEEEe-CCCeEEEEeCCCceeeeEEeC----CCCceeeEEcCC
Q 024372          180 ---------IVQTLETKSPVTSAEVSR-------DGRYITTA-DGSSVKFWDANHFGLVKGYNM----PCNTESASLEPK  238 (268)
Q Consensus       180 ---------~~~~~~~~~~v~~~~~s~-------~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~----~~~~~~~~~~~~  238 (268)
                               .+..+.++..+..+++.+       +|+++++. ..+.|...++...+.+.....    ...+..+.+.+ 
T Consensus       254 ~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~p-  332 (353)
T 2g8s_A          254 GEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGP-  332 (353)
T ss_dssp             BSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECT-
T ss_pred             CCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECC-
Confidence                     112223334566777753       46776665 456777777665433322211    12344555555 


Q ss_pred             CCCEEEe
Q 024372          239 LGNIFIA  245 (268)
Q Consensus       239 ~~~~~~~  245 (268)
                      +|.++++
T Consensus       333 dG~lyv~  339 (353)
T 2g8s_A          333 DGYLYVL  339 (353)
T ss_dssp             TSCEEEE
T ss_pred             CCcEEEE
Confidence            5776664

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=89.35  E-value=9.7  Score=32.73  Aligned_cols=190  Identities=9%  Similarity=0.099  Sum_probs=110.6

Q ss_pred             CcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcE-EEEeeCCCcEEEEeCCC-CCeeeeec-c----CC
Q 024372           31 GFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALF-SASGSADFTAKLWDALT-GDEKHSFE-H----KH  103 (268)
Q Consensus        31 g~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~-l~s~s~D~~v~iw~~~~-~~~~~~~~-~----~~  103 (268)
                      .+.+|--. ..+++|+|+++.+.++.+.-.+ .|..=.|-....+ |+|   +..|+-|++.. ..+...+. |    ..
T Consensus        77 ~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~~~l~lVT---~taVyHWsi~~~s~P~kvFdR~~~L~~~  151 (494)
T 1bpo_A           77 SKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALVT---DNAVYHWSMEGESQPVKMFDRHSSLAGC  151 (494)
T ss_dssp             SSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEETTEEEEEC---SSEEEEEESSSSCCCEEEEECCGGGTTC
T ss_pred             CcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCCCeEEEEc---CCeeEEecccCCCCchhheecchhcccc
Confidence            34555443 7789999999988777766544 4444455433333 333   56899999864 23444443 2    23


Q ss_pred             eEEEEEECCCCCEEEEee-------CCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCC---CcEEEEeeC---CCeE
Q 024372          104 IVRACAFSEDTHLLLTGG-------FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSD---QTILSSCTD---SGGV  170 (268)
Q Consensus       104 ~v~~v~~~~~~~~l~s~~-------~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~~~---d~~i  170 (268)
                      .|.....+++.++++..+       -.|.+.+|..+.  ...+.+.+|.+....+.. +..   ..++.-+..   .+.+
T Consensus       152 QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er--~~sQ~ieGhaa~F~~~~~-~g~~~~~~lf~fa~r~~~g~kL  228 (494)
T 1bpo_A          152 QIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR--KVSQPIEGHAASFAQFKM-EGNAEESTLFCFAVRGQAGGKL  228 (494)
T ss_dssp             EEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT--CCEEEECCSEEEEEEEEC-TTCSSEEEEEEEEECSTTCCEE
T ss_pred             eEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc--cccchheeeeeeeEEEec-CCCCCCceEEEEEEecCCCcEE
Confidence            566677788999887533       236788998763  345666666544433322 111   123332222   2678


Q ss_pred             EEEeCCCC---c------eEEe-ecC---CCCEEEEEECCCCcEE-EEeCCCeEEEEeCCCceeeeEEeCCC
Q 024372          171 RLWDARSG---K------IVQT-LET---KSPVTSAEVSRDGRYI-TTADGSSVKFWDANHFGLVKGYNMPC  228 (268)
Q Consensus       171 ~iwd~~~~---~------~~~~-~~~---~~~v~~~~~s~~g~~l-~~~~~~~v~~wd~~~~~~~~~~~~~~  228 (268)
                      .|-++...   .      .+.. +..   .....++.+++...++ +...-|.|.++|++++.++..-.+..
T Consensus       229 hi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~  300 (494)
T 1bpo_A          229 HIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISG  300 (494)
T ss_dssp             EEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred             EEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccC
Confidence            88887432   1      1111 111   1224567777765444 45566899999999998886555543

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=88.64  E-value=14  Score=33.72  Aligned_cols=230  Identities=10%  Similarity=0.021  Sum_probs=110.5

Q ss_pred             CCCCcEEEEEeC-----CCCeEEeeCCCCCeEE-Eee-CccC------cEEEEEecCCCcEEEEe----------eCCCc
Q 024372           28 TPDGFFLVSASK-----DSSPMLRNGETGDWIG-TFE-GHKG------AVWSCCLDANALFSASG----------SADFT   84 (268)
Q Consensus        28 ~~dg~~l~s~s~-----d~~i~iw~~~~~~~~~-~~~-~h~~------~V~~~~~~~~~~~l~s~----------s~D~~   84 (268)
                      +|||++++.+-.     -.+++++|+.+++.+. .|. .-+.      +-..++|-.+..++++.          +...+
T Consensus       138 ~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~~~~~~  217 (711)
T 4hvt_A          138 FQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSSLYPNS  217 (711)
T ss_dssp             SSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTTSSBCE
T ss_pred             CCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCcCCCCCE
Confidence            358888877622     2367899999998763 222 0001      00223565444444432          12367


Q ss_pred             EEEEeCCCCCe--eeeec--cCCeEEEEEECCCCC-----EEEEee---CCCeEEEEECCCCCCCCeEecCCcccEEEEE
Q 024372           85 AKLWDALTGDE--KHSFE--HKHIVRACAFSEDTH-----LLLTGG---FEKILRIFDLNRPDAPPREVGNSSGSIRTVA  152 (268)
Q Consensus        85 v~iw~~~~~~~--~~~~~--~~~~v~~v~~~~~~~-----~l~s~~---~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~  152 (268)
                      |+.|.+.+...  ...+.  ....-.....+++++     .+++.+   ....+.+.|...+......+.......  +.
T Consensus       218 v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~  295 (711)
T 4hvt_A          218 LYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSDAT--LQ  295 (711)
T ss_dssp             EEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTTCE--EE
T ss_pred             EEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCcce--Ee
Confidence            99999877642  22222  222222344566655     345433   224455556543222112221111111  12


Q ss_pred             EeCCCCcEEEEe----------eCCCeEEEEeCCCC-------ceEEe-ecC--CCCEEEEEECCCCcEEEEeCCC--eE
Q 024372          153 WLHSDQTILSSC----------TDSGGVRLWDARSG-------KIVQT-LET--KSPVTSAEVSRDGRYITTADGS--SV  210 (268)
Q Consensus       153 ~~~~~~~~~~~~----------~~d~~i~iwd~~~~-------~~~~~-~~~--~~~v~~~~~s~~g~~l~~~~~~--~v  210 (268)
                      ..+.+ .+++..          ...+.|...|+.++       +..+. +..  ...+..+.+.++.-++..-.++  .+
T Consensus       296 ~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~l  374 (711)
T 4hvt_A          296 GSFKE-YVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKDRVFLATYDNVVAKV  374 (711)
T ss_dssp             EEETT-EEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSSCEEEEEEETTEEEE
T ss_pred             eeECC-EEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECCEEEEEEEECCEEEE
Confidence            23333 333321          13467888888653       22232 332  2347788888875444444443  57


Q ss_pred             EEEeCCCce-eeeE-EeCCC-Cce-eeEEcCCCCCEEEeccC---CCeEEEEECCCCc
Q 024372          211 KFWDANHFG-LVKG-YNMPC-NTE-SASLEPKLGNIFIAGGE---DMWVHVFDFHTGE  261 (268)
Q Consensus       211 ~~wd~~~~~-~~~~-~~~~~-~~~-~~~~~~~~~~~~~~gs~---d~~i~~wd~~~g~  261 (268)
                      .++|+.... .++. ...+. ... .....+..+.++++.+.   =..++.+|.. ++
T Consensus       375 ~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~  431 (711)
T 4hvt_A          375 VTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT-HE  431 (711)
T ss_dssp             EEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT-SC
T ss_pred             EEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC-Cc
Confidence            778875543 2233 33432 122 22233434556665443   3568888876 44

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=88.01  E-value=20  Score=35.80  Aligned_cols=213  Identities=9%  Similarity=0.103  Sum_probs=111.0

Q ss_pred             CeEEeeCCCCCeE--EEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEE
Q 024372           42 SPMLRNGETGDWI--GTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLT  119 (268)
Q Consensus        42 ~i~iw~~~~~~~~--~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s  119 (268)
                      ++.|-|...+..+  +.+.+ .+.|    ++|....+|--+ ..++.|+|+.+......+...++|..=.|-.+. .|+-
T Consensus        49 ~vvIidl~~~~~~~rrpi~A-dsAI----MnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWis~~-~l~l  121 (1630)
T 1xi4_A           49 QVVIIDMNDPSNPIRRPISA-DSAI----MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN-TVAL  121 (1630)
T ss_pred             eEEEEECCCCCCcccccccc-hhhc----cCCCcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEecCCC-eeEE
Confidence            5677777765433  11221 1122    577777766443 679999999988887777766666555553332 3433


Q ss_pred             eeCCCeEEEEECCCCCCCCeEecCC----cccEEEEEEeCCCCcEEEEee------CCCeEEEEeCCCCceEEeecCCCC
Q 024372          120 GGFEKILRIFDLNRPDAPPREVGNS----SGSIRTVAWLHSDQTILSSCT------DSGGVRLWDARSGKIVQTLETKSP  189 (268)
Q Consensus       120 ~~~d~~i~~~d~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~------~d~~i~iwd~~~~~~~~~~~~~~~  189 (268)
                      .+ +..+.-|++.....+...+..|    ...|..-.-+++..++++.|-      -.|.+.+|..+.+. -+.+++|..
T Consensus       122 VT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~  199 (1630)
T 1xi4_A          122 VT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAA  199 (1630)
T ss_pred             Ec-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhHh
Confidence            33 3568899986433333333222    223444455677777766653      22678888876432 222333321


Q ss_pred             -EEEEEEC--CC-CcEEEEe----CCCeEEEEeCCCc-eeeeEE-------eCCC-----CceeeEEcCCCCCEEEeccC
Q 024372          190 -VTSAEVS--RD-GRYITTA----DGSSVKFWDANHF-GLVKGY-------NMPC-----NTESASLEPKLGNIFIAGGE  248 (268)
Q Consensus       190 -v~~~~~s--~~-g~~l~~~----~~~~v~~wd~~~~-~~~~~~-------~~~~-----~~~~~~~~~~~~~~~~~gs~  248 (268)
                       ...+.+.  +. ..++..+    .++.+++-++.+. ..-..|       ..+.     -+.+...++. -..+..-+.
T Consensus       200 ~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k-~g~iy~itk  278 (1630)
T 1xi4_A          200 SFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEK-HDVVFLITK  278 (1630)
T ss_pred             hhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccc-cCEEEEEec
Confidence             1111111  11 1222211    2467777777432 000111       1111     1223333442 334556677


Q ss_pred             CCeEEEEECCCCcEEe
Q 024372          249 DMWVHVFDFHTGEQIA  264 (268)
Q Consensus       249 d~~i~~wd~~~g~~~~  264 (268)
                      -|.|++||+.||..+.
T Consensus       279 ~G~~~~~d~~t~~~i~  294 (1630)
T 1xi4_A          279 YGYIHLYDLETGTCIY  294 (1630)
T ss_pred             CceEEEEecccchhhh
Confidence            7889999998887653

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=87.99  E-value=9  Score=30.63  Aligned_cols=180  Identities=13%  Similarity=0.126  Sum_probs=82.0

Q ss_pred             EEEeeCCCcEEEEeCCCCCeee-eecc-CCeEEEEEECCCCCEEEEeeCC----C-------eEEEEECCCCCCCC-eEe
Q 024372           76 SASGSADFTAKLWDALTGDEKH-SFEH-KHIVRACAFSEDTHLLLTGGFE----K-------ILRIFDLNRPDAPP-REV  141 (268)
Q Consensus        76 l~s~s~D~~v~iw~~~~~~~~~-~~~~-~~~v~~v~~~~~~~~l~s~~~d----~-------~i~~~d~~~~~~~~-~~~  141 (268)
                      ++-|+.  .+..||..++.-.. .... ...........++++++.|+..    +       .+..||..+.+... ...
T Consensus        19 ~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~   96 (318)
T 2woz_A           19 LLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPL   96 (318)
T ss_dssp             EEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCB
T ss_pred             hhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCC
Confidence            344443  36778887665322 1111 1111222234567788888731    1       15667765432100 001


Q ss_pred             cCCcccEEEEEEeCCCCcEEEEeeCC------CeEEEEeCCCCceEEeecCCCC-E-EEEEECCCCcEEE-EeC------
Q 024372          142 GNSSGSIRTVAWLHSDQTILSSCTDS------GGVRLWDARSGKIVQTLETKSP-V-TSAEVSRDGRYIT-TAD------  206 (268)
Q Consensus       142 ~~~~~~v~~~~~~~~~~~~~~~~~~d------~~i~iwd~~~~~~~~~~~~~~~-v-~~~~~s~~g~~l~-~~~------  206 (268)
                      ......-..+. . ++..++.+|...      +.+.++|+.+.+=...-....+ . .+++. .++++++ ++.      
T Consensus        97 p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~  173 (318)
T 2woz_A           97 PSARCLFGLGE-V-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKC  173 (318)
T ss_dssp             SSCBCSCEEEE-E-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCB
T ss_pred             CccccccceEE-E-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCc
Confidence            11111111222 2 344444444321      3588889887653322111111 1 12222 4555544 332      


Q ss_pred             CCeEEEEeCCCceeeeEEeCCCCc--eeeEEcCCCCCEEEeccCC-----CeEEEEECCCCcE
Q 024372          207 GSSVKFWDANHFGLVKGYNMPCNT--ESASLEPKLGNIFIAGGED-----MWVHVFDFHTGEQ  262 (268)
Q Consensus       207 ~~~v~~wd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~gs~d-----~~i~~wd~~~g~~  262 (268)
                      -..+.++|..+..-...-..+...  -..+..  ++++++.||.+     ..+.+||..+++-
T Consensus       174 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W  234 (318)
T 2woz_A          174 TNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKW  234 (318)
T ss_dssp             CCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCE
T ss_pred             cceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeE
Confidence            135889998765433222222221  122222  47888888753     3578899876653

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=87.25  E-value=14  Score=31.87  Aligned_cols=214  Identities=9%  Similarity=0.117  Sum_probs=119.5

Q ss_pred             CeEEeeCCCCCeE--EEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEE
Q 024372           42 SPMLRNGETGDWI--GTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLT  119 (268)
Q Consensus        42 ~i~iw~~~~~~~~--~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s  119 (268)
                      ++.|-|...+..+  +.+.+ .+.    =++|....+|--+ ..++.++|+++......+...+.|..=.|-.+ +.|+-
T Consensus        49 ~vvIiDl~~~~~~~rrpi~A-dsA----IMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~-~~l~l  121 (494)
T 1bpo_A           49 QVVIIDMNDPSNPIRRPISA-DSA----IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL-NTVAL  121 (494)
T ss_dssp             EEEEEETTSTTSCEEEECCC-SEE----EECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEET-TEEEE
T ss_pred             eEEEEECCCCCcceeccccc-cee----eeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCC-CeEEE
Confidence            5667777775433  22222 112    2578777776544 67999999999988888876666654444322 34444


Q ss_pred             eeCCCeEEEEECCCCCCCCeEecCC----cccEEEEEEeCCCCcEEEEeeC------CCeEEEEeCCCCceEEeecCCCC
Q 024372          120 GGFEKILRIFDLNRPDAPPREVGNS----SGSIRTVAWLHSDQTILSSCTD------SGGVRLWDARSGKIVQTLETKSP  189 (268)
Q Consensus       120 ~~~d~~i~~~d~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~------d~~i~iwd~~~~~~~~~~~~~~~  189 (268)
                      .+ +..+.-|+++....+...+..|    ..-|..-..+++..++++.|-.      .|.+.+|..+.+. -+.+++|..
T Consensus       122 VT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa  199 (494)
T 1bpo_A          122 VT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAA  199 (494)
T ss_dssp             EC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEE
T ss_pred             Ec-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheeeee
Confidence            43 4578899987544444444333    2234444557777887666531      2678899887543 344555532


Q ss_pred             E-EEEEECCCC---cEEE-Ee---CCCeEEEEeCCCc---ee---eeEE--eCCC----C-ceeeEEcCCCCCEEEeccC
Q 024372          190 V-TSAEVSRDG---RYIT-TA---DGSSVKFWDANHF---GL---VKGY--NMPC----N-TESASLEPKLGNIFIAGGE  248 (268)
Q Consensus       190 v-~~~~~s~~g---~~l~-~~---~~~~v~~wd~~~~---~~---~~~~--~~~~----~-~~~~~~~~~~~~~~~~gs~  248 (268)
                      . ..+.+..+.   .++. +.   .++.+++-++...   ..   .+..  ..+.    . +.+...++. -..+..-..
T Consensus       200 ~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~k-ygviyviTK  278 (494)
T 1bpo_A          200 SFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEK-HDVVFLITK  278 (494)
T ss_dssp             EEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETT-TTEEEEEET
T ss_pred             eeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEeccc-CCEEEEEec
Confidence            1 122221111   1222 22   2467888887532   00   1111  1111    1 234444543 345556677


Q ss_pred             CCeEEEEECCCCcEEee
Q 024372          249 DMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       249 d~~i~~wd~~~g~~~~~  265 (268)
                      -|.|++||+.||..+..
T Consensus       279 ~G~i~lyDleTgt~i~~  295 (494)
T 1bpo_A          279 YGYIHLYDLETGTCIYM  295 (494)
T ss_dssp             TSEEEEEETTTCCEEEE
T ss_pred             CceEEEEecccceeeee
Confidence            78999999999987654

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=87.05  E-value=14  Score=31.72  Aligned_cols=102  Identities=10%  Similarity=0.050  Sum_probs=56.0

Q ss_pred             cEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeee--eec-------cCCeEEEEEECCC---CCEEEEeeC--------
Q 024372           63 AVWSCCLDANALFSASGSADFTAKLWDALTGDEKH--SFE-------HKHIVRACAFSED---THLLLTGGF--------  122 (268)
Q Consensus        63 ~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~--~~~-------~~~~v~~v~~~~~---~~~l~s~~~--------  122 (268)
                      .-+.++|.|+++++++-...+.|++++..++....  .+.       .......++|+|+   +..|+.+..        
T Consensus        28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~  107 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD  107 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred             CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence            45689999999988776544578888765444322  221       1234668999995   445554432        


Q ss_pred             -----CCeEEEEECCCCC-------CCCeEec-CCcccEEEEEEeCCCCcEEEEe
Q 024372          123 -----EKILRIFDLNRPD-------APPREVG-NSSGSIRTVAWLHSDQTILSSC  164 (268)
Q Consensus       123 -----d~~i~~~d~~~~~-------~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~  164 (268)
                           ...|..|+.....       .....+. ........++|.+++..+++.+
T Consensus       108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                 1245555543211       0111111 1112357788888876555554

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=85.15  E-value=9.1  Score=36.31  Aligned_cols=37  Identities=16%  Similarity=0.058  Sum_probs=31.4

Q ss_pred             cEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeee
Q 024372           63 AVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF   99 (268)
Q Consensus        63 ~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~   99 (268)
                      .+.+++..++..++.+-+.|+++|+|++.+++++.+.
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  273 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence            4566677778889999999999999999999887765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	268
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-21
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-18
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-16
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-19
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-17
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-11
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-17
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	8e-14
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.003
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	8e-14
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-13
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-12
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-10
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-08
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-12
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-08
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-11
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-10
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-10
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	8e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-10
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-09
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.003
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	5e-09
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	8e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	9e-09
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	8e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-05
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	2e-08
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	8e-06
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	5e-08
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	6e-08
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-06
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	8e-07
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.003
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	3e-06
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	8e-06
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	3e-05
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-06
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.003
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.003
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.004
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	9e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.001
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.001
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.002

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 89.4 bits (220), Expect = 3e-21
 Identities = 47/178 (26%), Positives = 72/178 (40%), Gaps = 3/178 (1%)

Query: 40  DSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF 99
           D++  L + ETG    TF GH G V S  L  +     SG+ D +AKLWD   G  + +F
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF 222

Query: 100 E-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ 158
             H+  + A  F  + +   TG  +   R+FDL           ++     T        
Sbjct: 223 TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG 282

Query: 159 TILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTADG-SSVKFWD 214
            +L +  D     +WDA        L    + V+   V+ DG  + T    S +K W+
Sbjct: 283 RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 80.2 bits (196), Expect = 4e-18
 Identities = 41/259 (15%), Positives = 84/259 (32%), Gaps = 11/259 (4%)

Query: 14  GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA 73
           GH   +  + +     D   LVSAS+D   ++ +  T + +         V +C    + 
Sbjct: 53  GHLAKIYAMHWGT---DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109

Query: 74  LFSASGSADFTAKLWDALTGDEKHSFEHK---HIVRACAFSEDTHLLLTGGFEKILRIFD 130
            + A G  D    +++  T +       +   H              +            
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 169

Query: 131 LNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSP 189
                         +G + +++     +  +S   D+   +LWD R G   QT    +S 
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDA-SAKLWDVREGMCRQTFTGHESD 228

Query: 190 VTSAEVSRDGRYITTA--DGSSVKFWDANHFGLVKGYNMPCNTESASLE-PKLGNIFIAG 246
           + +     +G    T   D +   F       L+   +        S+   K G + +AG
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG 288

Query: 247 GEDMWVHVFDFHTGEQIAI 265
            +D   +V+D    ++  +
Sbjct: 289 YDDFNCNVWDALKADRAGV 307

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 75.2 bits (183), Expect = 3e-16
 Identities = 35/166 (21%), Positives = 69/166 (41%), Gaps = 5/166 (3%)

Query: 12  CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDA 71
               +    D+    + PD    VS + D+S  L +   G    TF GH+  + + C   
Sbjct: 177 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP 236

Query: 72  NALFSASGSADFTAKLWDALTGDEKHSFEHKHI---VRACAFSEDTHLLLTGGFEKILRI 128
           N    A+GS D T +L+D     E  ++ H +I   + + +FS+   LLL G  +    +
Sbjct: 237 NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNV 296

Query: 129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
           +D  + D     +      +  +     D   +++ +    +++W+
Sbjct: 297 WDALKAD-RAGVLAGHDNRVSCLGV-TDDGMAVATGSWDSFLKIWN 340

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.5 bits (202), Expect = 6e-19
 Identities = 51/215 (23%), Positives = 94/215 (43%), Gaps = 25/215 (11%)

Query: 23  FYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD 82
               I P+G  +VSAS+D +  +   +TG  + TF GH+  V     + +    AS S D
Sbjct: 105 SSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSND 164

Query: 83  FTAKLWDALTGDEKHSF-EHKHIVRACAFSEDT--------------------HLLLTGG 121
            T ++W   T + K    EH+H+V   +++ ++                      LL+G 
Sbjct: 165 QTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS 224

Query: 122 FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIV 181
            +K ++++D          +      +R V +    + ILS   D   +R+WD ++ + +
Sbjct: 225 RDKTIKMWD-VSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADD-KTLRVWDYKNKRCM 282

Query: 182 QTLET-KSPVTSAEVSRDGRYITTADG-SSVKFWD 214
           +TL   +  VTS +  +   Y+ T     +VK W+
Sbjct: 283 KTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.2 bits (191), Expect = 2e-17
 Identities = 54/309 (17%), Positives = 101/309 (32%), Gaps = 72/309 (23%)

Query: 14  GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDA-- 71
           GH  PV  + + P       +VSAS+D++  + + ETGD+  T +GH  +V     D   
Sbjct: 15  GHRSPVTRVIFHP---VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 71

Query: 72  ----------------------------------------NALFSASGSADFTAKLWDAL 91
                                                   N     S S D T K+W+  
Sbjct: 72  KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 131

Query: 92  TGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSG---- 146
           TG    +F  H+  VR    ++D  L+ +   ++ +R++ +   +       +       
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 191

Query: 147 --------------SIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVT 191
                         +             L S +    +++WD  +G  + TL    + V 
Sbjct: 192 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVR 251

Query: 192 SAEVSRDGRYI-TTADGSSVKFWDANHFGLV---KGYNMPCNTESASLEPKLGNIFIAGG 247
                  G++I + AD  +++ WD  +   +     +       S           + G 
Sbjct: 252 GVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVT--SLDFHKT-APYVVTGS 308

Query: 248 EDMWVHVFD 256
            D  V V++
Sbjct: 309 VDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.9 bits (146), Expect = 2e-11
 Identities = 35/274 (12%), Positives = 82/274 (29%), Gaps = 67/274 (24%)

Query: 56  TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRA------- 107
              GH+  V             S S D T K+WD  TGD + + + H   V+        
Sbjct: 12  ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 71

Query: 108 -----------------------------------CAFSEDTHLLLTGGFEKILRIFDLN 132
                                               +   +   +++   +K ++++++ 
Sbjct: 72  KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 131

Query: 133 RPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE------- 185
                    G+       +   + D T+++SC++   VR+W   + +    L        
Sbjct: 132 TGYCVKTFTGHR--EWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE 189

Query: 186 --------------TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNT 230
                           +   + +  + G ++ +     ++K WD +    +       N 
Sbjct: 190 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 249

Query: 231 ESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIA 264
               L    G   ++  +D  + V+D+     + 
Sbjct: 250 VRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK 283

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.5 bits (194), Expect = 1e-17
 Identities = 62/302 (20%), Positives = 105/302 (34%), Gaps = 48/302 (15%)

Query: 2   DKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHK 61
            + ++  P V  GH   V+          G  +VS S D++  + +  TG  + T  GH 
Sbjct: 2   RRGELKSPKVLKGHDDHVITCL----QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT 57

Query: 62  GAVWSCCLDANA--------------------------------------LFSASGSADF 83
           G VWS  +  N                                           SGS D 
Sbjct: 58  GGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDA 117

Query: 84  TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN 143
           T ++WD  TG   H          C   +    +++G ++ +++++D          +  
Sbjct: 118 TLRVWDIETGQCLHVLMGHVAAVRCVQYDGRR-VVSGAYDFMVKVWDPE----TETCLHT 172

Query: 144 SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYIT 203
             G    V  L  D   + S +    +R+WD  +G  + TL     +TS    +D   ++
Sbjct: 173 LQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVS 232

Query: 204 TADGSSVKFWDANHFGLVKGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ 262
               S+VK WD      ++    P     + +      N  I   +D  V ++D  TGE 
Sbjct: 233 GNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEF 292

Query: 263 IA 264
           I 
Sbjct: 293 IR 294

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.3 bits (165), Expect = 8e-14
 Identities = 39/193 (20%), Positives = 76/193 (39%), Gaps = 15/193 (7%)

Query: 33  FLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT 92
            +VS + D    + + ET   + T +GH   V+S   D   +   SGS D + ++WD  T
Sbjct: 149 RVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHV--VSGSLDTSIRVWDVET 206

Query: 93  GDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVA 152
           G+  H+      +         ++L++G  +  ++I+D+          G +        
Sbjct: 207 GNCIHTLTGHQSL-TSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTC 265

Query: 153 WLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET------KSPVTSAEVSRDGRYITTA- 205
              +   +++S  D G V+LWD ++G+ ++ L T         V     S          
Sbjct: 266 LQFNKNFVITSSDD-GTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGS 324

Query: 206 -DGS---SVKFWD 214
            +G+    +   D
Sbjct: 325 RNGTEETKLLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (81), Expect = 0.003
 Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 9/88 (10%)

Query: 11  VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF-----EGHKGAVW 65
           +             + +  +  F++++S D +  L + +TG++I         G  G VW
Sbjct: 250 LQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVW 309

Query: 66  SCCLDANALFSASGSADFTA----KLWD 89
                   L  A GS + T      + D
Sbjct: 310 RIRASNTKLVCAVGSRNGTEETKLLVLD 337

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.3 bits (165), Expect = 8e-14
 Identities = 38/191 (19%), Positives = 70/191 (36%), Gaps = 28/191 (14%)

Query: 51  GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE--------HK 102
           G    T     G         +  + A+GS D   ++WD+ TG      +        HK
Sbjct: 195 GQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHK 254

Query: 103 HIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG-----------NSSGSIRTV 151
             V +  F+ D   +++G  ++ +++++L   +                       + +V
Sbjct: 255 DSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSV 314

Query: 152 AWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSR------DGRYITT 204
           A   +D+ ILS   D  GV  WD +SG  +  L+  ++ V S  V+       +     T
Sbjct: 315 ATTQNDEYILSGSKD-RGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFAT 373

Query: 205 ADG-SSVKFWD 214
             G    + W 
Sbjct: 374 GSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.6 bits (158), Expect = 6e-13
 Identities = 34/173 (19%), Positives = 69/173 (39%), Gaps = 26/173 (15%)

Query: 29  PDGFFLVSASKDSSPMLRNGETGDWIGTFE-------GHKGAVWSCCLDANALFSASGSA 81
            DG ++ + S D +  + + ETG  +   +       GHK +V+S     +     SGS 
Sbjct: 215 GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL 274

Query: 82  DFTAKLWDALTGDEK-------------HSFEHKHIVRACAFSEDTHLLLTGGFEKILRI 128
           D + KLW+    + K                 HK  V + A +++   +L+G  ++ +  
Sbjct: 275 DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLF 334

Query: 129 FDLNRPDAPPREVGNSSGSIRTVAW-----LHSDQTILSSCTDSGGVRLWDAR 176
           +D  +   P   +     S+ +VA      L  +  + ++ +     R+W  +
Sbjct: 335 WDK-KSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.9 bits (151), Expect = 5e-12
 Identities = 33/139 (23%), Positives = 53/139 (38%), Gaps = 22/139 (15%)

Query: 14  GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD------------WIGTFEGHK 61
           GH   V  + ++    DG  +VS S D S  L N +  +               T+ GHK
Sbjct: 252 GHKDSVYSVVFTR---DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHK 308

Query: 62  GAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACA------FSEDT 114
             V S     N  +  SGS D     WD  +G+     + H++ V + A         + 
Sbjct: 309 DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEY 368

Query: 115 HLLLTGGFEKILRIFDLNR 133
           ++  TG  +   RI+   +
Sbjct: 369 NVFATGSGDCKARIWKYKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.5 bits (137), Expect = 4e-10
 Identities = 47/303 (15%), Positives = 95/303 (31%), Gaps = 45/303 (14%)

Query: 3   KRKVAVPLV-CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG-- 59
            R++ V L     H+  V  + +S    DG +L +   + +  +     G  +       
Sbjct: 48  PREIDVELHKSLDHTSVVCCVKFSN---DGEYLATGC-NKTTQVYRVSDGSLVARLSDDS 103

Query: 60  ----------------HKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKH 103
                               + S C   +  F A+G+ D   ++WD          +   
Sbjct: 104 AANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHE 163

Query: 104 IVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS 163
                     +   L  G      +   +          +    + TVA    D   +++
Sbjct: 164 QDIYSLDYFPSGDKLVSGSGDR-TVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAA 222

Query: 164 CTDSGGVRLWDARSGKIVQTLET--------KSPVTSAEVSRDGRYITTA-DGSSVKFWD 214
            +    VR+WD+ +G +V+ L++        K  V S   +RDG+ + +     SVK W+
Sbjct: 223 GSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN 282

Query: 215 ANHFGLVKGYNMPCNTESASLEPKL------------GNIFIAGGEDMWVHVFDFHTGEQ 262
             +         P +                          ++G +D  V  +D  +G  
Sbjct: 283 LQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP 342

Query: 263 IAI 265
           + +
Sbjct: 343 LLM 345

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.1 bits (123), Expect = 2e-08
 Identities = 18/84 (21%), Positives = 39/84 (46%), Gaps = 9/84 (10%)

Query: 12  CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDA 71
             GH   V+ +  +    +  +++S SKD   +  + ++G+ +   +GH+ +V S  +  
Sbjct: 304 YIGHKDFVLSVATTQ---NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVAN 360

Query: 72  NALFS------ASGSADFTAKLWD 89
            +         A+GS D  A++W 
Sbjct: 361 GSSLGPEYNVFATGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.0 bits (115), Expect = 2e-07
 Identities = 43/265 (16%), Positives = 76/265 (28%), Gaps = 43/265 (16%)

Query: 15  HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANAL 74
           H     +   +   P   FL+     S P     +T D+   +           L     
Sbjct: 1   HYLVPYNQRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVEL----- 55

Query: 75  FSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGG-----------FE 123
                                  S +H  +V    FS D   L TG              
Sbjct: 56  ---------------------HKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGS 94

Query: 124 KILRIFDLNRPDAPPREVGNSS-----GSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG 178
            + R+ D +  +  P  +  SS       IR+V +    + + +   D            
Sbjct: 95  LVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRK 154

Query: 179 KIVQTLETKSPVTSAEVSRDGRYITTADG-SSVKFWDANHFGLVKGYNMPCNTESASLEP 237
            ++     +  + S +    G  + +  G  +V+ WD          ++     + ++ P
Sbjct: 155 IVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSP 214

Query: 238 KLGNIFIAGGEDMWVHVFDFHTGEQ 262
             G    AG  D  V V+D  TG  
Sbjct: 215 GDGKYIAAGSLDRAVRVWDSETGFL 239

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.9 bits (99), Expect = 2e-05
 Identities = 17/108 (15%), Positives = 42/108 (38%), Gaps = 8/108 (7%)

Query: 166 DSGGVRLWDARSGK-----IVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGL 220
            +    L++    +     + ++L+  S V   + S DG Y+ T    + + +  +   L
Sbjct: 36  TNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSL 95

Query: 221 VKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAITSS 268
           V   +      +A+ +P+  N   +   D+++    F    +   T +
Sbjct: 96  VARLSDDS---AANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA 140

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (152), Expect = 3e-12
 Identities = 34/255 (13%), Positives = 83/255 (32%), Gaps = 12/255 (4%)

Query: 10  LVCH-GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC 68
           + C    S+ V  L       D   +VS  +D++  + +  T +      GH G+V    
Sbjct: 8   IHCRSETSKGVYCL-----QYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQ 62

Query: 69  LDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRI 128
            D   + +    +  +      +   E  +    H         +  +++T   ++ + +
Sbjct: 63  YDERVIIT---GSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAV 119

Query: 129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS 188
           +D               G    V  +  D   + S +    +++W+  + + V+TL    
Sbjct: 120 WD-MASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK 178

Query: 189 PVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE 248
              +    RD   ++ +  ++++ WD      ++                     ++G  
Sbjct: 179 RGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN--KRIVSGAY 236

Query: 249 DMWVHVFDFHTGEQI 263
           D  + V+D       
Sbjct: 237 DGKIKVWDLVAALDP 251

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (119), Expect = 5e-08
 Identities = 31/172 (18%), Positives = 64/172 (37%), Gaps = 18/172 (10%)

Query: 53  WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFS 111
                 GH+ AV     D   + SASG  D T K+W+  T +   +   HK  +    + 
Sbjct: 130 LRRVLVGHRAAVNVVDFDDKYIVSASG--DRTIKVWNTSTCEFVRTLNGHKRGIACLQYR 187

Query: 112 EDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR 171
           +   L+++G  +  +R++D+         +    G    V  +  D   + S    G ++
Sbjct: 188 D--RLVVSGSSDNTIRLWDIE----CGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIK 241

Query: 172 LWDARSGKIVQTLETKSPVTSAE--------VSRDGRYI-TTADGSSVKFWD 214
           +WD  +    +       + +          +  D   I +++   ++  WD
Sbjct: 242 VWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 3e-04
 Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 2/50 (4%)

Query: 40  DSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD 89
            ++   R       + T   H G V+    D   +   S S D T  +WD
Sbjct: 246 VAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQI--VSSSHDDTILIWD 293

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.4 bits (147), Expect = 1e-11
 Identities = 20/138 (14%), Positives = 52/138 (37%), Gaps = 3/138 (2%)

Query: 56  TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDT 114
           T  GH  +V + CL     +  +G+ D   +++D++          H   V A  ++   
Sbjct: 7   TLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG- 64

Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
            +L++G  ++ +R++D+ +        G++S         + +   + + +    + +W 
Sbjct: 65  GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 124

Query: 175 ARSGKIVQTLETKSPVTS 192
                 V     +     
Sbjct: 125 LPKESSVPDHGEEHDYPL 142

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.8 bits (122), Expect = 2e-08
 Identities = 28/163 (17%), Positives = 57/163 (34%), Gaps = 8/163 (4%)

Query: 14  GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA 73
           GH   V+    + +  +  ++++ + D    + +     ++    GH G VW+       
Sbjct: 10  GHMTSVI----TCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG 65

Query: 74  LFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTH---LLLTGGFEKILRIFD 130
           +   SGS D T ++WD   G   H FE  +    C    +      ++TG  +  L ++ 
Sbjct: 66  IL-VSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 124

Query: 131 LNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLW 173
           L +  + P         +       +   +         VR  
Sbjct: 125 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV 167

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.7 bits (114), Expect = 2e-07
 Identities = 29/186 (15%), Positives = 57/186 (30%), Gaps = 7/186 (3%)

Query: 31  GFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA 90
           G  +VS S D++ ++ +      +    GH   ++S   D       S S D T ++WD 
Sbjct: 171 GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL 230

Query: 91  LTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRT 150
             G+  ++ +    +       D  L+       I      +          N    +  
Sbjct: 231 ENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTN----LSA 286

Query: 151 VAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET--KSPVTSAEVSRDGRYITTADGS 208
           +   +    IL S ++     +++ RSGK+V          + S                
Sbjct: 287 ITTFYVSDNILVSGSE-NQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDG 345

Query: 209 SVKFWD 214
                 
Sbjct: 346 QSFLEI 351

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.3 bits (100), Expect = 1e-05
 Identities = 20/127 (15%), Positives = 45/127 (35%), Gaps = 5/127 (3%)

Query: 145 SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYIT 203
             S+ T   L  +   + +  D   +R++D+ + K +  L      V + + +  G  ++
Sbjct: 12  MTSVITC--LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVS 69

Query: 204 TADGSSVKFWDANHFGLVKGYNMPCNT--ESASLEPKLGNIFIAGGEDMWVHVFDFHTGE 261
            +   +V+ WD         +    +T      +E K     + G  D  +HV+      
Sbjct: 70  GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES 129

Query: 262 QIAITSS 268
            +     
Sbjct: 130 SVPDHGE 136

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 58.7 bits (140), Expect = 1e-10
 Identities = 21/190 (11%), Positives = 48/190 (25%), Gaps = 21/190 (11%)

Query: 12  CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW-------IGTFEGHKGAV 64
               +      +      D   L   S  S     +    ++               G+ 
Sbjct: 171 IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSP 230

Query: 65  WSCCLDANALFSASGSADFTAKLWDALTGDEKHS--------FEHKHIVRACAFSEDTHL 116
               L   ++ S +G  D       +   +                 I       E    
Sbjct: 231 NPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAY 290

Query: 117 LLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR 176
                 + +L  +D+       R+V     ++  +      +T++    D G +  +   
Sbjct: 291 YQGAPEKGVLLKYDVKT-----RKVTEVKNNLTDLRLSADRKTVMVRKDD-GKIYTFPLE 344

Query: 177 SGKIVQTLET 186
             +  +T+ET
Sbjct: 345 KPEDERTVET 354

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 51.8 bits (122), Expect = 2e-08
 Identities = 17/219 (7%), Positives = 50/219 (22%), Gaps = 18/219 (8%)

Query: 12  CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDA 71
               +      F +   P            +  + + E               ++   DA
Sbjct: 130 ITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT-TENSHDYAPAFDA 188

Query: 72  NALFSASGSADFTAKLWDALTGDEKHSFE--------HKHIVRACAFSEDTHLLLTGGFE 123
           ++      S        D +  +                           +     G ++
Sbjct: 189 DSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYD 248

Query: 124 KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHS-----DQTILSSCTDSGGVRLWDARSG 178
                   +  +  P +         ++                   + G +  +D ++ 
Sbjct: 249 LNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR 308

Query: 179 KIVQTLETKSPVTSAEVSRDGRYI-TTADGSSVKFWDAN 216
           K+ +    K+ +T   +S D + +    D   +  +   
Sbjct: 309 KVTE---VKNNLTDLRLSADRKTVMVRKDDGKIYTFPLE 344

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (136), Expect = 4e-10
 Identities = 14/79 (17%), Positives = 25/79 (31%)

Query: 53  WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSE 112
                  H+  V S        +  S   D     W    G      +    V +C  S 
Sbjct: 257 DKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISV 316

Query: 113 DTHLLLTGGFEKILRIFDL 131
           D   ++TG  +K   ++++
Sbjct: 317 DDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 4e-09
 Identities = 27/163 (16%), Positives = 58/163 (35%), Gaps = 4/163 (2%)

Query: 53  WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSE 112
            +  F+GH        +  +     +G  D T + WD   G +    +    + +  +  
Sbjct: 175 LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCP 234

Query: 113 DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRL 172
               L  G     + +  +N+PD            + ++ + +  +  +S+  D   +  
Sbjct: 235 TGEWLAVGMESSNVEVLHVNKPDKYQLH--LHESCVLSLKFAYCGKWFVSTGKD-NLLNA 291

Query: 173 WDARSGKIVQTLETKSPVTSAEVSRDGRYITTADG-SSVKFWD 214
           W    G  +   +  S V S ++S D +YI T  G      ++
Sbjct: 292 WRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (115), Expect = 2e-07
 Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 4/78 (5%)

Query: 12  CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDA 71
            H H   V+ L ++     G + VS  KD+         G  I        +V SC +  
Sbjct: 261 LHLHESCVLSLKFAY---CGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISV 316

Query: 72  NALFSASGSADFTAKLWD 89
           +  +  +GS D  A +++
Sbjct: 317 DDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (105), Expect = 4e-06
 Identities = 32/259 (12%), Positives = 64/259 (24%), Gaps = 10/259 (3%)

Query: 14  GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGT-----FEGHKGAVWSCC 68
            H   V  +  S        + +        + +                     + SC 
Sbjct: 49  NHGEVVCAVTISN---PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCK 104

Query: 69  LDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRI 128
           L  +      G    T  +WD      +   E      AC     +              
Sbjct: 105 LLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGN 164

Query: 129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILS-SCTDSGGVRLWDARSGKIVQTLETK 187
             +               +        S+      +      VR WD R G+ +Q  +  
Sbjct: 165 IAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFT 224

Query: 188 SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGG 247
           S + S      G ++     SS       +       ++  +   +      G  F++ G
Sbjct: 225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTG 284

Query: 248 EDMWVHVFDFHTGEQIAIT 266
           +D  ++ +    G  I  +
Sbjct: 285 KDNLLNAWRTPYGASIFQS 303

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 4e-05
 Identities = 16/97 (16%), Positives = 33/97 (34%), Gaps = 5/97 (5%)

Query: 72  NALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDL 131
             +       D            + ++  H  +V A   S  T  + TGG +  ++++D+
Sbjct: 21  GQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDI 79

Query: 132 NRPDAP----PREVGNSSGSIRTVAWLHSDQTILSSC 164
           + P         +  N    IR+   L    T++   
Sbjct: 80  SHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG 116

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 8e-05
 Identities = 12/48 (25%), Positives = 20/48 (41%)

Query: 170 VRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANH 217
           +     R  + + TL     V +  +S   R++ T     VK WD +H
Sbjct: 34  IGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISH 81

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 56.3 bits (134), Expect = 8e-10
 Identities = 24/228 (10%), Positives = 57/228 (25%), Gaps = 25/228 (10%)

Query: 1   MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
                 A P+      R V  +  +    DG   V+        ++ G+    +     +
Sbjct: 129 TADGLEAKPVRTFPMPRQVYLMRAAD---DGSLYVAGPDIYKMDVKTGKYTVALPLRNWN 185

Query: 61  KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTG 120
           +    +                     W   +   + S     +     F +D     T 
Sbjct: 186 RKGYSAPD---------------VLYFWPHQSPRHEFS----MLYTIARFKDDKQDPATA 226

Query: 121 GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI 180
                    DL       +E  + +    T      D   +        +  +D +  K+
Sbjct: 227 DLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIY--GVLNRLAKYDLKQRKL 284

Query: 181 VQTLETKSPVTSAEVSRDGRYI-TTADGSSVKFWDANHFGLVKGYNMP 227
           ++              + G  +      + +  ++ +    VK   +P
Sbjct: 285 IKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 332

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 45.5 bits (106), Expect = 2e-06
 Identities = 32/276 (11%), Positives = 69/276 (25%), Gaps = 33/276 (11%)

Query: 1   MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG- 59
            +     +  V     R +     SP         + +               +  F   
Sbjct: 73  KNTFHANLSSVPGEVGRSMYSFAISP--DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTA 130

Query: 60  --HKGAVWSCCLDANALFSASGSADFTA-------KLWDALTGDEKHSFEHKHIVRACAF 110
              +            ++    + D +           D  TG    +   ++  R    
Sbjct: 131 DGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYS 190

Query: 111 SEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV 170
           + D                       P +   +    + T+A    D+   ++     G 
Sbjct: 191 APDVLYFW------------------PHQSPRHEFSMLYTIARFKDDKQDPATADLLYGY 232

Query: 171 RLWDARSGKIVQTLETK--SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPC 228
              D ++GK              +   S           + +  +D     L+K  N+  
Sbjct: 233 LSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDH 292

Query: 229 NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIA 264
                + + K G+    GG    + VF+  T E++ 
Sbjct: 293 TYYCVAFDKK-GDKLYLGGTFNDLAVFNPDTLEKVK 327

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 38.6 bits (88), Expect = 5e-04
 Identities = 15/249 (6%), Positives = 46/249 (18%), Gaps = 15/249 (6%)

Query: 27  ITPDGFFLVSASKDSSPMLRNGETGDWIGTFE-GHKGAVWSCCLDAN-ALFSASGSADFT 84
           +     +++  +  ++  + +  +     +     K    +  +  +        +    
Sbjct: 4   LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63

Query: 85  AKLWDALTGDEKHSF-------EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP 137
               D  T              E    + + A S D   +                    
Sbjct: 64  IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR 123

Query: 138 PREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSR 197
                 + G              +     +    L+ A        ++T     +  +  
Sbjct: 124 LEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRN 183

Query: 198 DGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDF 257
             R                 +      +      + +                     D 
Sbjct: 184 WNR------KGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL 237

Query: 258 HTGEQIAIT 266
            TG+     
Sbjct: 238 KTGKTHTQE 246

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.6 bits (132), Expect = 1e-09
 Identities = 32/276 (11%), Positives = 74/276 (26%), Gaps = 31/276 (11%)

Query: 15  HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW--IGTFEGHKGAVWSCCLDAN 72
              P+    ++    D   +     +    +       W  +   + H G V       +
Sbjct: 6   LVEPISCHAWNK---DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD 62

Query: 73  ALFSASGSADFTAKLWDALTGDEKHSFEHKHIVR---ACAFSEDTHLLLTGGFEKILRIF 129
           +    +   D  A +W       K +     I R      ++ +      G   +++ I 
Sbjct: 63  SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISIC 122

Query: 130 DLNRPDAPPREVGNSSGSIRTV--AWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET- 186
              + +              TV     H +  +L++ +     R++ A   ++ +     
Sbjct: 123 YFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPT 182

Query: 187 ------------------KSPVTS-AEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMP 227
                                V      +   R    +  S+V   DA+    V      
Sbjct: 183 PWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASE 242

Query: 228 CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
                A       ++ +A G D +  +F + +    
Sbjct: 243 TLPLLAVTFITESSL-VAAGHDCFPVLFTYDSAAGK 277

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.4 bits (82), Expect = 0.003
 Identities = 17/168 (10%), Positives = 36/168 (21%), Gaps = 41/168 (24%)

Query: 12  CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDA 71
               +   + L       +   + +   D  P+L   ++     +F G            
Sbjct: 236 VATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRG 294

Query: 72  NALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDL 131
                   + D  A    +          HK+ V   +                      
Sbjct: 295 LTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGK---------------- 338

Query: 132 NRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK 179
                                   +  +   +    GG+ +WD RS +
Sbjct: 339 ------------------------AKCSQFCTTGMDGGMSIWDVRSLE 362

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.1 bits (128), Expect = 5e-09
 Identities = 28/219 (12%), Positives = 60/219 (27%), Gaps = 48/219 (21%)

Query: 56  TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKH------------ 103
             + H   ++S     +     S S D   K+WD    D ++  +  +            
Sbjct: 9   AGKAHDADIFSVSACNSFT--VSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66

Query: 104 --IVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNS---------SGSIRTVA 152
             +      + +  L+ T  F   L  + + R D   + +              S   + 
Sbjct: 67  DVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALK 126

Query: 153 WLHSDQT----ILSSCTDSGGVRLWDARS-------------------GKIVQTLETKSP 189
           W  S+       L +    G   +W                       G +   +     
Sbjct: 127 WGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQF 186

Query: 190 VTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPC 228
            TS ++S  G   T  +  +V+  + +    +  +    
Sbjct: 187 ATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQH 225

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.4 bits (108), Expect = 2e-06
 Identities = 38/247 (15%), Positives = 72/247 (29%), Gaps = 47/247 (19%)

Query: 13  HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRN------------------GETGDWI 54
             HS   +    S        LV+     +  +                     E    +
Sbjct: 118 KKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTV 177

Query: 55  GTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKH-------IVRA 107
            +         S  +    L  A+G  + T ++ +  T    ++FE +H        +R+
Sbjct: 178 ESPMTPSQFATSVDISERGLI-ATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRS 236

Query: 108 CAFSEDTHLLLTGG---------------FEKILRIFDLNRPDAPPREVGNSSGSIRTVA 152
             FS    LL                    E+I  +                S  + +++
Sbjct: 237 VKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLS 296

Query: 153 WLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-----KSPVTSAEVSRDGRYITTADG 207
           +  S +T+ S+  D G +R WD ++ + + TL       +       V   G  +     
Sbjct: 297 FNDSGETLCSAGWD-GKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGV 355

Query: 208 SSVKFWD 214
             VKF  
Sbjct: 356 FDVKFLK 362

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 8e-06
 Identities = 41/321 (12%), Positives = 89/321 (27%), Gaps = 77/321 (23%)

Query: 14  GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE------GHKGAVWSC 67
            H   +  +          F VS S D    + + +  D     +       HK  +   
Sbjct: 12  AHDADIFSVSACNS-----FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66

Query: 68  CLDANALFS-------ASGSADFTAKLWDALTGDEKHSF-----------EHKHIVRACA 109
            +              A+ S       +     DE                 KH   A  
Sbjct: 67  DVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALK 126

Query: 110 FSEDT-----HLLLTGGFEKILRIFDLNRP-----------------DAPPREVGNSSGS 147
           +         H L+    +    I+  +                             S  
Sbjct: 127 WGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQF 186

Query: 148 IRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-------SPVTSAEVSRDGR 200
             +V    S++ ++++  ++G V++ +  + + +   E++       + + S + S  G 
Sbjct: 187 ATSVDI--SERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS 244

Query: 201 YITTADGSSV----KFWDANHFGLVKGYNMPCNTESASLEPKL-------------GNIF 243
            +  A  S+       ++      +   ++P ++  ASL                 G   
Sbjct: 245 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL 304

Query: 244 IAGGEDMWVHVFDFHTGEQIA 264
            + G D  +  +D  T E+I 
Sbjct: 305 CSAGWDGKLRFWDVKTKERIT 325

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.5 bits (90), Expect = 3e-04
 Identities = 18/114 (15%), Positives = 29/114 (25%), Gaps = 7/114 (6%)

Query: 47  NGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIV 105
              +         H   V S   + +     S   D   + WD  T +   +   H   +
Sbjct: 275 PTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDI 334

Query: 106 R----ACAFSEDTHLLLTGGFEKILRIFDLNR--PDAPPREVGNSSGSIRTVAW 153
                  A  E    L   G   +  +    R    A   E        R++ W
Sbjct: 335 EIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRW 388

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.9 bits (125), Expect = 9e-09
 Identities = 29/231 (12%), Positives = 66/231 (28%), Gaps = 16/231 (6%)

Query: 54  IGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE----KHSFEHKHIVRACA 109
           +   +  K  +    +  +       S D +  ++      +      S  +KH +  C 
Sbjct: 4   VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63

Query: 110 FSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG 169
           F ++T L +  G  +   +          + + N+  ++            L + +  G 
Sbjct: 64  FIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGL 123

Query: 170 VRLWDARSGKIVQTLETKSPVTSAE--------VSRDGRYITTADGSSVKFWDANHFGLV 221
           + + D R+              + +         +   R I   + S V+++        
Sbjct: 124 IEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD 183

Query: 222 KGYNMPCNTE----SASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAITSS 268
            G       +      +L PK    +     D  V V  F        +S 
Sbjct: 184 NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSK 234

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 8e-06
 Identities = 10/155 (6%), Positives = 43/155 (27%), Gaps = 21/155 (13%)

Query: 81  ADFTAKLWDALTGDEKHSFEHKH-----IVRACAFSEDTHLLLTGGFEKILRIFDLN--- 132
            +   + +     ++ +    +      I       ++         +  + +   +   
Sbjct: 168 NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQG 227

Query: 133 -----------RPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIV 181
                      R      +  N +  + ++ +       L +    G +  W+ ++ K +
Sbjct: 228 DDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEF-SPRHKFLYTAGSDGIISCWNLQTRKKI 286

Query: 182 QTLETKSPVTSAEVSRDGRYITTADGS-SVKFWDA 215
           +     +  +  +++     +  A    + K   A
Sbjct: 287 KNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAA 321

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.1 bits (97), Expect = 3e-05
 Identities = 8/69 (11%), Positives = 17/69 (24%)

Query: 53  WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSE 112
                      V S        F  +  +D     W+  T  +  +F   +       + 
Sbjct: 243 LNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIAC 302

Query: 113 DTHLLLTGG 121
             ++L    
Sbjct: 303 SDNILCLAT 311

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 52.1 bits (124), Expect = 2e-08
 Identities = 26/210 (12%), Positives = 56/210 (26%), Gaps = 20/210 (9%)

Query: 27  ITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAK 86
              +  F V+        L +G T +     +    AV    L A+  +      D    
Sbjct: 28  WDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVN 86

Query: 87  LWDALTGDE------KHSFEHKHIVRACAFSED-THLLLTGGFEKILRIFDL-------- 131
           + D    +       K   E + I  +     +  + +    +     I D         
Sbjct: 87  MIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKI 146

Query: 132 --NRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK--IVQTLETK 187
              R      +  +    +  +   H     + +  ++G + L D           +  +
Sbjct: 147 QSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAE 206

Query: 188 SPVTSAEVSRDGRYITTADGSSVKFWDANH 217
             +    +    RY  TA  +  K    + 
Sbjct: 207 RFLHDGGLDGSHRYFITAANARNKLVVIDT 236

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.0 bits (103), Expect = 8e-06
 Identities = 24/142 (16%), Positives = 42/142 (29%), Gaps = 16/142 (11%)

Query: 131 LNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPV 190
              P+  P +  N             +     +  D+G + L D  + +I   L+T   V
Sbjct: 14  HVAPEDRPTQQMND---------WDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAV 64

Query: 191 TSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTESASLE------PKLGNIF 243
             + +S  GRY+        V   D           +   +E+ S+E       +     
Sbjct: 65  HISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAI 124

Query: 244 IAGGEDMWVHVFDFHTGEQIAI 265
                     + D  T E   I
Sbjct: 125 AGAYWPPQYVIMDGETLEPKKI 146

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 50.7 bits (120), Expect = 5e-08
 Identities = 20/217 (9%), Positives = 45/217 (20%), Gaps = 31/217 (14%)

Query: 27  ITPDG-FFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTA 85
                   L      S+    +          +              A     GS   + 
Sbjct: 131 NCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIH---PGAAATHYLGSCPASL 187

Query: 86  KLWDALTGDEKHS-------FEHKHIVRACAFSEDTHLLLTG---------GFEKILRIF 129
              D                       +A   +    L+                     
Sbjct: 188 AASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKA 247

Query: 130 DLNRPDAPPREVGNSSGSIRTVA--------WLHSDQTILSSCTDSGGVRLWDARSGKIV 181
            ++  ++  +     S   + VA         + + +   S    +       A  G+  
Sbjct: 248 AIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTS 307

Query: 182 QTLETKSPVTSAEVSRDGR---YITTADGSSVKFWDA 215
             +       +   ++DG    Y  +A    +  +DA
Sbjct: 308 GPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDA 344

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.3 bits (93), Expect = 1e-04
 Identities = 14/150 (9%), Positives = 29/150 (19%), Gaps = 17/150 (11%)

Query: 75  FSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLL----------LTGGFEK 124
             A  +      +  A  G           +                        G    
Sbjct: 38  LPAYFAGTTENWVSCAGCGVTLGHSLG-AFLSLAVAGHSGSDFALASTSFARSAKGKRTD 96

Query: 125 ILRIFDL------NRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG 178
            + +FD          + P     +    +  +    S   +L     S           
Sbjct: 97  YVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGA 156

Query: 179 KIVQTLETKSPVTSAEVSRDGRYITTADGS 208
              Q  ++ S       +    Y+ +   S
Sbjct: 157 SDDQLTKSASCFHIHPGAAATHYLGSCPAS 186

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 50.4 bits (118), Expect = 6e-08
 Identities = 18/120 (15%), Positives = 32/120 (26%), Gaps = 2/120 (1%)

Query: 56  TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE--HKHIVRACAFSED 113
              GH  A+ +    A+     S  A+     WD  TG     F   H  ++     +  
Sbjct: 7   VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK 66

Query: 114 THLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLW 173
             L      + +  +          + V N   S      + +D  I  +          
Sbjct: 67  GDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYS 126

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.6 bits (103), Expect = 5e-06
 Identities = 31/260 (11%), Positives = 61/260 (23%), Gaps = 6/260 (2%)

Query: 11  VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF-EGHKGAVWSCCL 69
           V +GH++ +  L  S    DG  L SA  +      +  TG     F + H   +     
Sbjct: 7   VRYGHNKAITALSSSA---DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 63

Query: 70  DANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRA--CAFSEDTHLLLTGGFEKILR 127
            +          D    +    +G +        +              +      K + 
Sbjct: 64  TSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIA 123

Query: 128 IFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK 187
           I+   +    P    +S  ++       +     S            +    IV   E  
Sbjct: 124 IYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEIT 183

Query: 188 SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGG 247
           S   S   +       +         +         +       +             G 
Sbjct: 184 SVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGS 243

Query: 248 EDMWVHVFDFHTGEQIAITS 267
            D  V V++ +      I  
Sbjct: 244 LDNSVIVWNMNKPSDHPIII 263

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.4 bits (87), Expect = 5e-04
 Identities = 10/92 (10%), Positives = 30/92 (32%), Gaps = 3/92 (3%)

Query: 43  PMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF--- 99
             + N        ++  H   V       + +  A+GS D +  +W+     +       
Sbjct: 206 YSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKG 265

Query: 100 EHKHIVRACAFSEDTHLLLTGGFEKILRIFDL 131
            H           +   +++ G +  ++ +++
Sbjct: 266 AHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 47.1 bits (110), Expect = 7e-07
 Identities = 20/141 (14%), Positives = 36/141 (25%), Gaps = 4/141 (2%)

Query: 88  WDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGS 147
            D L    +H              +D        +   L   DL   +   REV      
Sbjct: 183 PDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVF 242

Query: 148 IRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYI-TTAD 206
             + A   +             +  +D      ++ +       S  VS DG  +     
Sbjct: 243 YFSTAVNPAKTRA---FGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGA 299

Query: 207 GSSVKFWDANHFGLVKGYNMP 227
              +  +DA         ++P
Sbjct: 300 LGDLAAYDAETLEKKGQVDLP 320

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.6 bits (106), Expect = 2e-06
 Identities = 16/119 (13%), Positives = 31/119 (26%), Gaps = 1/119 (0%)

Query: 14  GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA 73
             S  V+   +     D       +  +  +  + ETG+            +      N 
Sbjct: 192 HESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFST-AVNP 250

Query: 74  LFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLN 132
             + +  A    + +D             H   +   S D   +  GG    L  +D  
Sbjct: 251 AKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAE 309

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.3 bits (100), Expect = 2e-05
 Identities = 34/292 (11%), Positives = 76/292 (26%), Gaps = 43/292 (14%)

Query: 15  HSRPVVDLFYSP----ITPDG-FFLVSASKDSSPMLRNGETGDWIGTFEGHKGA------ 63
               + D   +P    + P G     + +K  S +  +  TG+ +G  +           
Sbjct: 25  KVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSL 84

Query: 64  -----------VWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSE 112
                      +           +          L+DA T   + +FE    +   A++ 
Sbjct: 85  FGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWAR 144

Query: 113 DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTV-------------------AW 153
           D   L   G +  +   +              + +                         
Sbjct: 145 DGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYT 204

Query: 154 LHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSS-VKF 212
              D           G+   D  +G++         V     + +          + ++ 
Sbjct: 205 ARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLES 264

Query: 213 WDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIA 264
           +D      +K   +P +  S ++    G+    GG    +  +D  T E+  
Sbjct: 265 FDLEKNASIKRVPLPHSYYSVNVSTD-GSTVWLGGALGDLAAYDAETLEKKG 315

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 46.8 bits (109), Expect = 8e-07
 Identities = 17/104 (16%), Positives = 38/104 (36%), Gaps = 2/104 (1%)

Query: 163 SCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGR--YITTADGSSVKFWDANHFGL 220
           + ++S  + + D  S K+  T+   S    A +S DG   Y+  A  + V   D     +
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV 66

Query: 221 VKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIA 264
           +       + +  ++ P    +++       + V D  +     
Sbjct: 67  IATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG 110

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 36.0 bits (81), Expect = 0.003
 Identities = 5/41 (12%), Positives = 13/41 (31%)

Query: 146 GSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET 186
                +A     + +  + +    V + D  +  I  T+  
Sbjct: 244 PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAV 284

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 45.3 bits (106), Expect = 3e-06
 Identities = 23/110 (20%), Positives = 39/110 (35%), Gaps = 7/110 (6%)

Query: 163 SCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLV 221
           +  D+G + L D  S KIV+ ++T   V  + +S  GRY+      + +   D       
Sbjct: 37  TLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPT 96

Query: 222 KGYNMPCNTESASLE------PKLGNIFIAGGEDMWVHVFDFHTGEQIAI 265
           K   +    E+ S+E       +               + D  T E   I
Sbjct: 97  KVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQI 146

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 44.2 bits (103), Expect = 8e-06
 Identities = 22/156 (14%), Positives = 45/156 (28%), Gaps = 5/156 (3%)

Query: 69  LDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRI 128
           LD   LFS +        L D  +       +  + V     S     LL  G +  + +
Sbjct: 28  LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDM 87

Query: 129 FDLNRPD----APPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL 184
            DL   +    A  +    +     +    + D+  ++         + D  + +  Q +
Sbjct: 88  IDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIV 147

Query: 185 ETKS-PVTSAEVSRDGRYITTADGSSVKFWDANHFG 219
            T+   V +     + R            +  N   
Sbjct: 148 STRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE 183

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 42.2 bits (98), Expect = 3e-05
 Identities = 31/235 (13%), Positives = 66/235 (28%), Gaps = 26/235 (11%)

Query: 2   DKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHK 61
           +  KV V        RP   L    +     F V+        L +G++   +   +   
Sbjct: 9   ESWKVLVKP----EDRPKKQLN--DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY 62

Query: 62  GAVWSCCLDANALFSASGSADFTAKLWDALTGDE------KHSFEHKHIVRACAFSEDTH 115
            AV    + A+  +      D    + D    +       K   E + +  +     +  
Sbjct: 63  -AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDR 121

Query: 116 LLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRT-----------VAWLHSDQTILSSC 164
             + G +              P + V     ++ T           +   H     + + 
Sbjct: 122 YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV 181

Query: 165 TDSGGVRLWDARSGKIVQ--TLETKSPVTSAEVSRDGRYITTADGSSVKFWDANH 217
            ++G V L + +    +   ++     +         RY  TA  +S K    + 
Sbjct: 182 KETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDS 236

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.2 bits (105), Expect = 4e-06
 Identities = 35/211 (16%), Positives = 64/211 (30%), Gaps = 27/211 (12%)

Query: 32  FFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANAL-FSASGSADFTAKLWD- 89
                 S   +  + + E   +    +                     GS    A   + 
Sbjct: 120 LLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEG 179

Query: 90  --ALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP--------- 138
              +T  E    E + ++   A+S+    L+   +   +   DL+  DA           
Sbjct: 180 TPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTE 239

Query: 139 --REVGNSSGSIRTVA---------WLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK 187
             R  G   G  + VA          L   +      T S  V + DA++G+ +   E  
Sbjct: 240 AERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG 299

Query: 188 SPVTSAEVSRDGR---YITTADGSSVKFWDA 215
             + S  VS+D +   Y  +    ++   DA
Sbjct: 300 HEIDSINVSQDEKPLLYALSTGDKTLYIHDA 330

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 36.3 bits (82), Expect = 0.003
 Identities = 15/164 (9%), Positives = 40/164 (24%), Gaps = 26/164 (15%)

Query: 26  PITPDGFFLVSASKDSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDANALFSASGSADF 83
             +     LV  +        +  +GD  ++   E    A  +           +     
Sbjct: 201 AYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRAL 260

Query: 84  TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN 143
                                 R     +           + + + D             
Sbjct: 261 D---------------------RIYLLVDQRDEWRHKTASRFVVVLDA--KTGERLAKFE 297

Query: 144 SSGSIRTVAWLHSDQTIL-SSCTDSGGVRLWDARSGKIVQTLET 186
               I ++     ++ +L +  T    + + DA SG+ ++++  
Sbjct: 298 MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ 341

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.4 bits (100), Expect = 1e-05
 Identities = 13/81 (16%), Positives = 26/81 (32%), Gaps = 2/81 (2%)

Query: 53  WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE--HKHIVRACAF 110
                  H G+V+      +    AS SAD T K+W+  T   + +     +   +    
Sbjct: 230 DSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGI 289

Query: 111 SEDTHLLLTGGFEKILRIFDL 131
                 L++      +   + 
Sbjct: 290 IWTKQALVSISANGFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.0 bits (99), Expect = 2e-05
 Identities = 7/65 (10%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 153 WLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAE--VSRDGRYITTADGS-S 209
               D T ++S +    +++W+  + K+ +T+   + +   +  +    + + +   +  
Sbjct: 245 TWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGF 304

Query: 210 VKFWD 214
           + F +
Sbjct: 305 INFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.6 bits (98), Expect = 2e-05
 Identities = 25/251 (9%), Positives = 46/251 (18%), Gaps = 14/251 (5%)

Query: 27  ITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAK 86
            TP G  +   +  +S       +      +  H           +  + ASG      +
Sbjct: 25  NTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVR 83

Query: 87  LW-------------DALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNR 133
           +W                +G  K         R  A  E                     
Sbjct: 84  IWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLT 143

Query: 134 PDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSA 193
             A      +   S        SD   ++                         +P  S 
Sbjct: 144 GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSL 203

Query: 194 EVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVH 253
             S  G                              +         G    +   D  + 
Sbjct: 204 FASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIK 263

Query: 254 VFDFHTGEQIA 264
           +++  T +   
Sbjct: 264 IWNVATLKVEK 274

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.4 bits (82), Expect = 0.003
 Identities = 30/260 (11%), Positives = 69/260 (26%), Gaps = 17/260 (6%)

Query: 11  VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG--DWIGTFEGHKGAVWSCC 68
           +   HS        S   P G++  S     +  + +          T     G V    
Sbjct: 53  IYTEHSHQTTVAKTS---PSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDIS 109

Query: 69  LDANA--LFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKIL 126
            D+ +  + +     +    ++   TG    +   +         + +            
Sbjct: 110 WDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDN 169

Query: 127 RIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE- 185
            +     P    +               + D ++ +S    G + L++   G      E 
Sbjct: 170 TVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFED 229

Query: 186 -------TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTESASLEP 237
                      V     S DG  I +A    ++K W+     + K   +    E   L  
Sbjct: 230 DSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGI 289

Query: 238 KL-GNIFIAGGEDMWVHVFD 256
                  ++   + +++  +
Sbjct: 290 IWTKQALVSISANGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 35.6 bits (80), Expect = 0.004
 Identities = 9/73 (12%), Positives = 21/73 (28%), Gaps = 4/73 (5%)

Query: 58  EGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHL 116
                 V       + +   +G+   +       +  +   + EH H       S   + 
Sbjct: 16  ARGTAVVLGNTPAGDKIQYCNGT---SVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYY 72

Query: 117 LLTGGFEKILRIF 129
             +G     +RI+
Sbjct: 73  CASGDVHGNVRIW 85

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.4 bits (100), Expect = 1e-05
 Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 8/63 (12%)

Query: 54  IGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSED 113
           + T  GH   +    L  N L   SGS D     W + +  + HS    +++ +   S+ 
Sbjct: 6   LKTISGHNKGIT--ALTVNPL--ISGSYDGRIMEWSSSSMHQDHS----NLIVSLDNSKA 57

Query: 114 THL 116
              
Sbjct: 58  QEY 60

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.7 bits (93), Expect = 9e-05
 Identities = 10/80 (12%), Positives = 24/80 (30%), Gaps = 3/80 (3%)

Query: 53  WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF--EHKHIVRACAF 110
            I           +   +      A+GS D    ++      +       HK  V    +
Sbjct: 207 KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLW 266

Query: 111 SEDTHLLLTGGFEKILRIFD 130
                 L++ G +  ++ ++
Sbjct: 267 ETP-STLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 1e-04
 Identities = 12/79 (15%), Positives = 27/79 (34%), Gaps = 2/79 (2%)

Query: 12  CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-GDWIGTFEGHKGAVWSCCLD 70
            +  S    +   +    +   + + S D++  + + +     I     HK  V +   +
Sbjct: 208 INAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWE 267

Query: 71  ANALFSASGSADFTAKLWD 89
             +    S  AD   K W+
Sbjct: 268 TPSTL-VSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.2 bits (89), Expect = 3e-04
 Identities = 13/78 (16%), Positives = 29/78 (37%), Gaps = 2/78 (2%)

Query: 97  HSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHS 156
                     A     +  L+ TG  +  + I+ + RP    + +      +  + W  +
Sbjct: 210 AISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLW-ET 268

Query: 157 DQTILSSCTDSGGVRLWD 174
             T++SS  D   ++ W+
Sbjct: 269 PSTLVSSGAD-ACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.2 bits (89), Expect = 3e-04
 Identities = 7/67 (10%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 150 TVAWLHSDQTILSSCTDSGGVRLWDARS-GKIVQTLET-KSPVTSAEVSRDGRYITTADG 207
                  ++ ++++ +    + ++  +   KI++ L   K  V +         +++   
Sbjct: 219 GANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGAD 278

Query: 208 SSVKFWD 214
           + +K W+
Sbjct: 279 ACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.2 bits (84), Expect = 0.001
 Identities = 27/258 (10%), Positives = 64/258 (24%), Gaps = 14/258 (5%)

Query: 11  VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLD 70
              GH++ +  L  +P       L+S S D   M  +  +       + H   + S    
Sbjct: 8   TISGHNKGITALTVNP-------LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNS 55

Query: 71  ANALFSASGSADFTAKLWDALTGDEKHSFEHKHIV--RACAFSEDTHLLLTGGFEKILRI 128
               +S+    D                              + D  LL+   F   +  
Sbjct: 56  KAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIK 115

Query: 129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS 188
                       +  +  ++            LS    S  ++         +    +++
Sbjct: 116 SVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSET 175

Query: 189 PVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE 248
            + + +V                   A     +   +     + A+ E    ++   G  
Sbjct: 176 YIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSL 235

Query: 249 DMWVHVFDFHTGEQIAIT 266
           D  + ++      +I   
Sbjct: 236 DTNIFIYSVKRPMKIIKA 253

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (89), Expect = 3e-04
 Identities = 11/82 (13%), Positives = 23/82 (28%), Gaps = 5/82 (6%)

Query: 12  CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAV----WSC 67
                 PV    ++    D     +   D++  + +  T   +  +   K  +       
Sbjct: 244 IEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGV 303

Query: 68  CLDANALFSASGSADFTAKLWD 89
               N     S S D T   ++
Sbjct: 304 VATGNGRI-ISLSLDGTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (88), Expect = 4e-04
 Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 5/67 (7%)

Query: 153 WLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSP-----VTSAEVSRDGRYITTADG 207
               D    ++      +R+WD  + K VQ                  + +GR I+ +  
Sbjct: 258 LSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD 317

Query: 208 SSVKFWD 214
            ++ F++
Sbjct: 318 GTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.6 bits (85), Expect = 0.001
 Identities = 10/60 (16%), Positives = 23/60 (38%), Gaps = 6/60 (10%)

Query: 77  ASGSADFTAKLWDALTGDEKHSFE-HKHIVR----ACAFSEDTHLLLTGGFEKILRIFDL 131
           A+  AD T ++WD  T      +   K  +         + +   +++   +  L  ++L
Sbjct: 267 ATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR-IISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.8 bits (83), Expect = 0.002
 Identities = 25/264 (9%), Positives = 68/264 (25%), Gaps = 23/264 (8%)

Query: 15  HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF--------EGHKGAVWS 66
            S  V  + +SP      +L S  +    ++          +         +   G +  
Sbjct: 62  GSSVVTTVKFSP-IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISD 120

Query: 67  CCLDANALFSASGSA--DFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTH----LLLTG 120
              D             D         +G+                 + +     + +  
Sbjct: 121 ISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGD 180

Query: 121 GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI 180
               +       +  A  R        +R V +       + +      +  +D +SG+ 
Sbjct: 181 DGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEF 240

Query: 181 VQTLETKSPVTSAEV----SRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTE---S 232
           ++ +E         +      D +   T    ++++ WD      V+ + +         
Sbjct: 241 LKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQ 300

Query: 233 ASLEPKLGNIFIAGGEDMWVHVFD 256
             +        I+   D  ++ ++
Sbjct: 301 VGVVATGNGRIISLSLDGTLNFYE 324

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	268
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.97
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.96
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.95
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.95
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.95
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.95
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.93
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.92
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.92
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.92
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.91
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.91
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.9
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.9
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.9
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.87
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.86
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.8
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.78
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.77
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.71
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.69
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.66
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.47
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.42
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.37
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.37
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.25
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.17
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.13
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.12
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.11
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.09
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.05
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.0
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.0
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.99
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.95
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.84
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.77
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.67
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.55
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.53
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.48
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.21
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.2
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.05
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.78
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.73
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.66
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.39
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.33
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.25
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.24
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.12
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.78
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.65
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.53
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.23
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.74
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.71
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	94.44
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	93.84
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	93.66
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	92.42
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	91.96
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	91.36
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	90.81
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	90.64
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	89.9
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	89.4
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	88.56
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	87.42
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	80.96

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.9e-38  Score=256.78  Aligned_cols=243  Identities=23%  Similarity=0.397  Sum_probs=202.1

Q ss_pred             cEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCc--------------
Q 024372            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANAL--------------   74 (268)
Q Consensus         9 ~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~--------------   74 (268)
                      ...|.||+++|++++|+|   +|++||||+.|++|+|||..+++++.++.+|.+.|.++++++++.              
T Consensus        10 ~~~L~GH~~~I~~l~~sp---~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~   86 (317)
T d1vyhc1          10 KYALSGHRSPVTRVIFHP---VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLW   86 (317)
T ss_dssp             SCEEECCSSCEEEEEECS---SSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEE
T ss_pred             cEEEcCCCCCeEEEEEcC---CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccc
Confidence            346789999999999985   889999999999999999999999999999998888888776644              


Q ss_pred             ----------------------------EEEEeeCCCcEEEEeCCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCe
Q 024372           75 ----------------------------FSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKI  125 (268)
Q Consensus        75 ----------------------------~l~s~s~D~~v~iw~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~  125 (268)
                                                  ++++++.|+.+++||+.++.....+. |...+.+++|++++++|++++.|+.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~  166 (317)
T d1vyhc1          87 DFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT  166 (317)
T ss_dssp             ETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCe
Confidence                                        45666777777788877777666654 6778999999999999999999999


Q ss_pred             EEEEECCCCCCCCeEecCCcccEEEEEEeCCCC-------------------cEEEEeeCCCeEEEEeCCCCceEEeecC
Q 024372          126 LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ-------------------TILSSCTDSGGVRLWDARSGKIVQTLET  186 (268)
Q Consensus       126 i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------------------~~~~~~~~d~~i~iwd~~~~~~~~~~~~  186 (268)
                      +++|++..... ......+...+.++.+.+...                   .++.+++.|+.|++||+++++++.++..
T Consensus       167 v~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~  245 (317)
T d1vyhc1         167 VRVWVVATKEC-KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG  245 (317)
T ss_dssp             EEEEETTTCCE-EEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             EEEEeecccee-eEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeC
Confidence            99999876543 344456677888888866442                   3567778889999999999999988874


Q ss_pred             -CCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCCC-ceeeEEcCCCCCEEEeccCCCeEEEEE
Q 024372          187 -KSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFD  256 (268)
Q Consensus       187 -~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gs~d~~i~~wd  256 (268)
                       ...+.+++++|++++|++ +.|+.|++||+++.+++..+..+.. +..+++++ ++++|++||.|+.|++||
T Consensus       246 ~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~-~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         246 HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHK-TAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECS-SSSCEEEEETTSEEEEEC
T ss_pred             CCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCeEEEeC
Confidence             567999999999998775 5789999999999999988886554 45666776 689999999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.4e-38  Score=262.46  Aligned_cols=247  Identities=13%  Similarity=0.193  Sum_probs=204.0

Q ss_pred             eeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC--eEEEeeCccCcEEEEEecCCCcEEEEeeC--
Q 024372            6 VAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDANALFSASGSA--   81 (268)
Q Consensus         6 ~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~--~~~~~~~h~~~V~~~~~~~~~~~l~s~s~--   81 (268)
                      ......+.+|.++|++++|+|   +|++||+|+.|++|++||..+++  ....+.+|.++|.+++|+|++.++++++.  
T Consensus        48 ~~~~~~~~~H~~~v~~~~~sp---~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~  124 (311)
T d1nr0a1          48 LTDTEIYTEHSHQTTVAKTSP---SGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGR  124 (311)
T ss_dssp             SSCCEEECCCSSCEEEEEECT---TSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCS
T ss_pred             CceeEEEcCCCCCEEEEEEeC---CCCeEeccccCceEeeeeeeccccccccccccccCccccccccccccccccccccc
Confidence            344455679999999999985   89999999999999999998876  34668899999999999999999988875  


Q ss_pred             CCcEEEEeCCCCCeeeeec-cCCeEEEEEECCCCC-EEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCc
Q 024372           82 DFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTH-LLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQT  159 (268)
Q Consensus        82 D~~v~iw~~~~~~~~~~~~-~~~~v~~v~~~~~~~-~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  159 (268)
                      +..+++|++.+++....+. |...|++++|+|+++ .+++|+.|+.|++||+++.+ .......|...|.++.++|++. 
T Consensus       125 ~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~-~~~~~~~~~~~i~~v~~~p~~~-  202 (311)
T d1nr0a1         125 ERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK-FKSTFGEHTKFVHSVRYNPDGS-  202 (311)
T ss_dssp             SCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE-EEEEECCCSSCEEEEEECTTSS-
T ss_pred             cccccccccccccccccccccccccccccccccceeeecccccccccccccccccc-cccccccccccccccccCcccc-
Confidence            5679999999888777664 778899999999887 58889999999999997643 2344556788999999998765 


Q ss_pred             EEEEeeCCCeEEEEeCCCCceEEeecC--------CCCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeCCCCc
Q 024372          160 ILSSCTDSGGVRLWDARSGKIVQTLET--------KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNT  230 (268)
Q Consensus       160 ~~~~~~~d~~i~iwd~~~~~~~~~~~~--------~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~~~~  230 (268)
                      ++++++.|+.|++||+++++.+..++.        ...|.+++|+|++++|+++ .|+.|++||++++++++++..+...
T Consensus       203 ~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~  282 (311)
T d1nr0a1         203 LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI  282 (311)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSG
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCc
Confidence            555667789999999999988877642        3569999999999998765 6899999999999999988765432


Q ss_pred             --eeeEEcCCCCCEEEeccCCCeEEEEECC
Q 024372          231 --ESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (268)
Q Consensus       231 --~~~~~~~~~~~~~~~gs~d~~i~~wd~~  258 (268)
                        ....+.+ .++.+++++.||.|++||.+
T Consensus       283 ~~~~~~~~~-~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         283 EDQQLGIIW-TKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             GGCEEEEEE-CSSCEEEEETTCCEEEEETT
T ss_pred             cceEEEEEe-cCCEEEEEECCCEEEEEeCC
Confidence              2233444 46789999999999999963

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.1e-37  Score=256.51  Aligned_cols=243  Identities=18%  Similarity=0.292  Sum_probs=203.3

Q ss_pred             ecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEE
Q 024372            8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKL   87 (268)
Q Consensus         8 ~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~i   87 (268)
                      ....|.||+++|++++|+|   ++++||+|+.||+|+|||..+++.+..+.+|.++|.+++|+|++.++++|+.|+.+++
T Consensus        47 ~~~tL~GH~~~I~~l~~s~---~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~  123 (340)
T d1tbga_          47 TRRTLRGHLAKIYAMHWGT---DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI  123 (340)
T ss_dssp             EEEEECCCSSCEEEEEECT---TSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred             eeEEECCCCCCEEEEEECC---CCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeec
Confidence            4456789999999999985   8999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCCe----eeee------------------------------------------ccCCeEEEEEECCCCCEEEEee
Q 024372           88 WDALTGDE----KHSF------------------------------------------EHKHIVRACAFSEDTHLLLTGG  121 (268)
Q Consensus        88 w~~~~~~~----~~~~------------------------------------------~~~~~v~~v~~~~~~~~l~s~~  121 (268)
                      |+......    ...+                                          .+...+....+.+....+++|+
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (340)
T d1tbga_         124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGA  203 (340)
T ss_dssp             EESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             ccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEee
Confidence            99744221    0000                                          1233467778888999999999


Q ss_pred             CCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeec---CCCCEEEEEECCC
Q 024372          122 FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE---TKSPVTSAEVSRD  198 (268)
Q Consensus       122 ~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~s~~  198 (268)
                      .|+.+++||++++. ....+..|.+.|.+++|+|++. ++++++.|+.|++||++..+.+..+.   +...+.+++|+|+
T Consensus       204 ~d~~v~i~d~~~~~-~~~~~~~h~~~i~~v~~~p~~~-~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~  281 (340)
T d1tbga_         204 CDASAKLWDVREGM-CRQTFTGHESDINAICFFPNGN-AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS  281 (340)
T ss_dssp             TTTEEEEEETTTTE-EEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSS
T ss_pred             cCceEEEEECCCCc-EEEEEeCCCCCeEEEEECCCCC-EEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCC
Confidence            99999999997654 3345556888999999998765 56667788999999999998877664   3456999999999


Q ss_pred             CcEEEE-eCCCeEEEEeCCCceeeeEEeCCCC-ceeeEEcCCCCCEEEeccCCCeEEEEE
Q 024372          199 GRYITT-ADGSSVKFWDANHFGLVKGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFD  256 (268)
Q Consensus       199 g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gs~d~~i~~wd  256 (268)
                      +++|++ +.|+.|++||+.+++++..+..+.. +..+++++ ++.+|++||.|+.|++||
T Consensus       282 ~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~-d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         282 GRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             SCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSCEEEEETTSCEEEEC
T ss_pred             CCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeC-CCCEEEEEccCCEEEEeC
Confidence            999876 4689999999999999988876544 55667776 699999999999999997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-37  Score=257.58  Aligned_cols=246  Identities=16%  Similarity=0.168  Sum_probs=205.9

Q ss_pred             eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCe-----EEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEE
Q 024372           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW-----IGTFEGHKGAVWSCCLDANALFSASGSADFTAKL   87 (268)
Q Consensus        13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~-----~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~i   87 (268)
                      .+|..+|++++|+|   +|++||+|+ |+.|+|||+.+++.     .....+|++.|.+++|+|++.+|++|+.|++|++
T Consensus        48 ~~H~~~V~~v~fs~---~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~i  123 (337)
T d1gxra_          48 LNHGEVVCAVTISN---PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSI  123 (337)
T ss_dssp             ECCSSCCCEEEECS---SSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEE
T ss_pred             CCCCCcEEEEEECC---CCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccc
Confidence            48999999999985   999999997 89999999877542     2334579999999999999999999999999999


Q ss_pred             EeCCCCCe--eeee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEe
Q 024372           88 WDALTGDE--KHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC  164 (268)
Q Consensus        88 w~~~~~~~--~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  164 (268)
                      ||+.....  ...+ .|...+..+.|+|++..+++++.|+.+++||+.+.+. ......|...+.+++|++++.. ++++
T Consensus       124 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~-~~~~~~~~~~v~~l~~s~~~~~-~~~~  201 (337)
T d1gxra_         124 WDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTL-VRQFQGHTDGASCIDISNDGTK-LWTG  201 (337)
T ss_dssp             EECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECTTSSE-EEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccc-cccc
Confidence            99876543  2333 3677899999999999999999999999999976542 3444567789999999887654 5566


Q ss_pred             eCCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEE
Q 024372          165 TDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIF  243 (268)
Q Consensus       165 ~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (268)
                      +.|+.+++||+++++.++.+.+...+.+++++|+++++++ +.++.|++||++.......+.....+..+.+++ ++++|
T Consensus       202 ~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~-~g~~l  280 (337)
T d1gxra_         202 GLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAY-CGKWF  280 (337)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECT-TSSEE
T ss_pred             cccccccccccccceeecccccccceEEEEEcccccccceeccccccccccccccccccccccccccceEEECC-CCCEE
Confidence            7789999999999999999988889999999999998875 578999999999887766555555566777777 69999


Q ss_pred             EeccCCCeEEEEECCCCcEEee
Q 024372          244 IAGGEDMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       244 ~~gs~d~~i~~wd~~~g~~~~~  265 (268)
                      ++|+.|+.|++||..+++++..
T Consensus       281 ~s~s~Dg~i~iwd~~~~~~~~~  302 (337)
T d1gxra_         281 VSTGKDNLLNAWRTPYGASIFQ  302 (337)
T ss_dssp             EEEETTSEEEEEETTTCCEEEE
T ss_pred             EEEeCCCeEEEEECCCCCEEEE
Confidence            9999999999999999988754

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5.7e-37  Score=254.08  Aligned_cols=247  Identities=12%  Similarity=0.138  Sum_probs=206.7

Q ss_pred             ecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCC
Q 024372           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG   93 (268)
Q Consensus        14 ~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~   93 (268)
                      .+.+.+..++++|   +|+.||.++ ++.+.+|++.+++....+.+|++.|.+++|+|++.+||+|+.|++|++||+.+.
T Consensus        15 ~~r~~~~~~a~~~---~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~   90 (311)
T d1nr0a1          15 TARGTAVVLGNTP---AGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQT   90 (311)
T ss_dssp             CCTTCCCCCEECT---TSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSST
T ss_pred             CCCCCeEEEEEcC---CCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecc
Confidence            4555666788885   889998875 567899999999998899999999999999999999999999999999999887


Q ss_pred             Cee--eee-ccCCeEEEEEECCCCCEEEEeeC--CCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCC
Q 024372           94 DEK--HSF-EHKHIVRACAFSEDTHLLLTGGF--EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG  168 (268)
Q Consensus        94 ~~~--~~~-~~~~~v~~v~~~~~~~~l~s~~~--d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~  168 (268)
                      ...  ..+ .|..+|.+++|+|+++.+++++.  ++.+++|+++.++. ...+..|...|.+++|+|++..++++|+.|+
T Consensus        91 ~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~-~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~  169 (311)
T d1nr0a1          91 THILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS-NGNLTGQARAMNSVDFKPSRPFRIISGSDDN  169 (311)
T ss_dssp             TCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCB-CBCCCCCSSCEEEEEECSSSSCEEEEEETTS
T ss_pred             ccccccccccccCccccccccccccccccccccccccccccccccccc-cccccccccccccccccccceeeeccccccc
Confidence            643  233 37889999999999999999875  45699999986543 3445567789999999998888888889999


Q ss_pred             eEEEEeCCCCceEEeecC-CCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCC--------CCceeeEEcCC
Q 024372          169 GVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMP--------CNTESASLEPK  238 (268)
Q Consensus       169 ~i~iwd~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~--------~~~~~~~~~~~  238 (268)
                      .|++||+++++....+.. ..++.++.++|+++++++ +.|+.|++||++....+..+...        ..+.+++++| 
T Consensus       170 ~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~-  248 (311)
T d1nr0a1         170 TVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP-  248 (311)
T ss_dssp             CEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT-
T ss_pred             ccccccccccccccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCC-
Confidence            999999999999888864 567999999999998875 46899999999988777666432        2245667776 


Q ss_pred             CCCEEEeccCCCeEEEEECCCCcEEeec
Q 024372          239 LGNIFIAGGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       239 ~~~~~~~gs~d~~i~~wd~~~g~~~~~~  266 (268)
                      ++++|++|+.|+.|++||+.+++++..+
T Consensus       249 ~~~~l~tgs~Dg~v~iwd~~t~~~~~~l  276 (311)
T d1nr0a1         249 DGTKIASASADKTIKIWNVATLKVEKTI  276 (311)
T ss_dssp             TSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence            6899999999999999999999987653

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-36  Score=252.71  Aligned_cols=238  Identities=15%  Similarity=0.194  Sum_probs=206.7

Q ss_pred             eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC--CCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeC
Q 024372           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET--GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA   90 (268)
Q Consensus        13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~--~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~   90 (268)
                      .+|++.|.+++|+|   ||++|++|+.|++|++||...  ++....+.+|...|..++|+|++.++++++.|+.+++|++
T Consensus        94 ~~h~~~I~~v~~s~---dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~  170 (337)
T d1gxra_          94 LNRDNYIRSCKLLP---DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDL  170 (337)
T ss_dssp             SCTTSBEEEEEECT---TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             cCCCCcEEEEEEcC---CCCEEEEeecccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            47999999999985   899999999999999999875  4567788999999999999999999999999999999999


Q ss_pred             CCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCe
Q 024372           91 LTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG  169 (268)
Q Consensus        91 ~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~  169 (268)
                      .+++...... |...+.+++|+++++.+++++.|+.+++||+++++. ... ..+.+.+.+++|+|++.. +++++.|+.
T Consensus       171 ~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~-~~~-~~~~~~i~~l~~~~~~~~-l~~~~~d~~  247 (337)
T d1gxra_         171 HNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ-LQQ-HDFTSQIFSLGYCPTGEW-LAVGMESSN  247 (337)
T ss_dssp             TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-EEE-EECSSCEEEEEECTTSSE-EEEEETTSC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccee-ecc-cccccceEEEEEcccccc-cceeccccc
Confidence            9888766554 788999999999999999999999999999976542 222 346778999999887754 556677899


Q ss_pred             EEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccC
Q 024372          170 VRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE  248 (268)
Q Consensus       170 i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~  248 (268)
                      +++||+++++......+...+.+++|+|++++|++ +.|+.|++||+...+.+..+.....+.++++++ ++++|++||.
T Consensus       248 i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~t~s~  326 (337)
T d1gxra_         248 VEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISV-DDKYIVTGSG  326 (337)
T ss_dssp             EEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECT-TSCEEEEEET
T ss_pred             cccccccccccccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCCCCEEEEEEeC-CCCEEEEEeC
Confidence            99999999998877777788999999999998875 578999999999998888887776777788887 6999999999


Q ss_pred             CCeEEEEEC
Q 024372          249 DMWVHVFDF  257 (268)
Q Consensus       249 d~~i~~wd~  257 (268)
                      |+.|++||+
T Consensus       327 D~~I~vWdl  335 (337)
T d1gxra_         327 DKKATVYEV  335 (337)
T ss_dssp             TSCEEEEEE
T ss_pred             CCeEEEEEE
Confidence            999999996

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.2e-36  Score=247.66  Aligned_cols=242  Identities=17%  Similarity=0.119  Sum_probs=188.3

Q ss_pred             EEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEee-CccCcEEEEEecCCCcEEEEeeCCCcEEEE
Q 024372           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE-GHKGAVWSCCLDANALFSASGSADFTAKLW   88 (268)
Q Consensus        10 ~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw   88 (268)
                      .++.||+++|++++|+|   ||++|++|+.|++|++||+++++.+..+. +|.+.|.+++|+|++.+ ++++.|+.+++|
T Consensus         6 ~~~~GH~~~V~~l~~s~---dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~~   81 (299)
T d1nr0a2           6 QVRYGHNKAITALSSSA---DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLKVV   81 (299)
T ss_dssp             EEECCCSSCEEEEEECT---TSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE-EEEETTTEEEEE
T ss_pred             eEcCCCCCCcEEEEECC---CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecccee-ecccceeeEEEe
Confidence            46789999999999985   89999999999999999999999988884 79999999999999875 567789999999


Q ss_pred             eCCCCCe---------------------------------eee--------eccCCeEEEEEECCCCCEEEEeeCCCeEE
Q 024372           89 DALTGDE---------------------------------KHS--------FEHKHIVRACAFSEDTHLLLTGGFEKILR  127 (268)
Q Consensus        89 ~~~~~~~---------------------------------~~~--------~~~~~~v~~v~~~~~~~~l~s~~~d~~i~  127 (268)
                      +......                                 ...        ......+.+++|+|+++.+++|+.|+.++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~  161 (299)
T d1nr0a2          82 PAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVH  161 (299)
T ss_dssp             CSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEE
T ss_pred             ccCCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9743210                                 000        01223467889999999999999999999


Q ss_pred             EEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEee---c-CCCCEEEEEECCCCcEEE
Q 024372          128 IFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL---E-TKSPVTSAEVSRDGRYIT  203 (268)
Q Consensus       128 ~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~---~-~~~~v~~~~~s~~g~~l~  203 (268)
                      +||++...........|...+.+++|+|++.. +++++.|+.|++||++++..+...   . +..++.+++|+|++++++
T Consensus       162 ~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~  240 (299)
T d1nr0a2         162 VYKLSGASVSEVKTIVHPAEITSVAFSNNGAF-LVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLA  240 (299)
T ss_dssp             EEEEETTEEEEEEEEECSSCEEEEEECTTSSE-EEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEE
T ss_pred             cccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccceE
Confidence            99987654322233456789999999987754 556677899999999887765433   3 346799999999999887


Q ss_pred             E-eCCCeEEEEeCCCceeeeEEeC---CCCceeeEEcCCCCCEEEeccCCCeEEEEEC
Q 024372          204 T-ADGSSVKFWDANHFGLVKGYNM---PCNTESASLEPKLGNIFIAGGEDMWVHVFDF  257 (268)
Q Consensus       204 ~-~~~~~v~~wd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~  257 (268)
                      + +.|+.|++||++..........   +.......+++ ++++|++||.|+.|++||+
T Consensus       241 sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~s~s~D~~i~iWdl  297 (299)
T d1nr0a2         241 TGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL-NETTIVSAGQDSNIKFWNV  297 (299)
T ss_dssp             EEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEE-ETTEEEEEETTSCEEEEEC
T ss_pred             EEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEEC-CCCEEEEEeCCCEEEEEec
Confidence            6 5789999999987644333322   22334444555 4789999999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.3e-35  Score=249.47  Aligned_cols=246  Identities=20%  Similarity=0.344  Sum_probs=199.1

Q ss_pred             ecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEee------------------CccCcEEEEEecCCCcE
Q 024372           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE------------------GHKGAVWSCCLDANALF   75 (268)
Q Consensus        14 ~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~------------------~h~~~V~~~~~~~~~~~   75 (268)
                      +|++.|++++|+|   ||++||+|+ |++|+||++.+++++.++.                  +|...|.+++|+|++.+
T Consensus        60 ~H~~~V~~l~fs~---dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~  135 (388)
T d1erja_          60 DHTSVVCCVKFSN---DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF  135 (388)
T ss_dssp             ECSSCCCEEEECT---TSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSE
T ss_pred             CCCCcEEEEEECC---CCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCc
Confidence            7999999999985   999999987 9999999999998877764                  35667999999999999


Q ss_pred             EEEeeCCCcEEEEeCCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEe
Q 024372           76 SASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWL  154 (268)
Q Consensus        76 l~s~s~D~~v~iw~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~  154 (268)
                      |++|+.|++|++|+...++...... |...|.++.+++++..+++++.++.+++||....... ... .+.....++.++
T Consensus       136 l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~~~-~~~~~~~~~~~~  213 (388)
T d1erja_         136 LATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCS-LTL-SIEDGVTTVAVS  213 (388)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE-EEE-ECSSCEEEEEEC
T ss_pred             ceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccc-ccc-cccccccccccc
Confidence            9999999999999999888777664 7889999999999999999999999999998754322 222 233456677788


Q ss_pred             CCCCcEEEEeeCCCeEEEEeCCCCceEEeec--------CCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeee---
Q 024372          155 HSDQTILSSCTDSGGVRLWDARSGKIVQTLE--------TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVK---  222 (268)
Q Consensus       155 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~--------~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~---  222 (268)
                      +.++.++++++.|+.|++||++++..+..+.        +...+.+++|+|++++|++ +.|+.|++||++......   
T Consensus       214 ~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  293 (388)
T d1erja_         214 PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK  293 (388)
T ss_dssp             STTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----------
T ss_pred             CCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccc
Confidence            8778888888899999999999998877653        2356999999999998876 578999999997543321   


Q ss_pred             ---------EEeCC-CCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEeec
Q 024372          223 ---------GYNMP-CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       223 ---------~~~~~-~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~~  266 (268)
                               ....+ .....+++.+ ++++|++|+.|+.|++||+++++++..+
T Consensus       294 ~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~sg~~dg~i~vwd~~~~~~~~~l  346 (388)
T d1erja_         294 TPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLML  346 (388)
T ss_dssp             -----CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             cccccceeeecccccceEEEEEECC-CCCEEEEEeCCCEEEEEECCCCcEEEEE
Confidence                     22222 2345566666 6899999999999999999999998764

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2e-35  Score=250.07  Aligned_cols=237  Identities=12%  Similarity=0.130  Sum_probs=189.7

Q ss_pred             cCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC--eEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCC
Q 024372           15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT   92 (268)
Q Consensus        15 h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~--~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~   92 (268)
                      +.+||++++|+|   ||.+||+|+.|+.|+||+..+++  ++..|++|.++|.+++|+|++.+|++|+.|++|++||+.+
T Consensus         6 ~~~pIt~~~~s~---dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~   82 (371)
T d1k8kc_           6 LVEPISCHAWNK---DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG   82 (371)
T ss_dssp             CSSCCCEEEECT---TSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred             CCCCeEEEEECC---CCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecc
Confidence            568999999985   99999999999999999998775  6788999999999999999999999999999999999987


Q ss_pred             CCeeeee---ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCC---eEecCCcccEEEEEEeCCCCcEEEEeeC
Q 024372           93 GDEKHSF---EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP---REVGNSSGSIRTVAWLHSDQTILSSCTD  166 (268)
Q Consensus        93 ~~~~~~~---~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~  166 (268)
                      +.....+   .|...|.+++|+|+++.|++|+.|+.+++|+++......   .....|.+.|.+++|+|++. ++++++.
T Consensus        83 ~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~-~l~s~s~  161 (371)
T d1k8kc_          83 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV-LLAAGSC  161 (371)
T ss_dssp             TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS-EEEEEET
T ss_pred             cccccccccccccccccccccccccccceeecccCcceeeeeeccccccccccccccccccccccccccccc-ceecccc
Confidence            7654433   367789999999999999999999999999986543321   22345678899999998765 5667788


Q ss_pred             CCeEEEEeCCCCc------------------eEEeec-CCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeC
Q 024372          167 SGGVRLWDARSGK------------------IVQTLE-TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNM  226 (268)
Q Consensus       167 d~~i~iwd~~~~~------------------~~~~~~-~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~  226 (268)
                      |++|++||+....                  .+.... +...+.+++|+|+|+++++ +.|+.|++||++....+..+..
T Consensus       162 D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~  241 (371)
T d1k8kc_         162 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS  241 (371)
T ss_dssp             TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEEC
T ss_pred             CcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeec
Confidence            8999999986532                  233333 3456899999999998875 5789999999998888888776


Q ss_pred             CCC-ceeeEEcCCCCCEEEeccCCCeEEEEEC
Q 024372          227 PCN-TESASLEPKLGNIFIAGGEDMWVHVFDF  257 (268)
Q Consensus       227 ~~~-~~~~~~~~~~~~~~~~gs~d~~i~~wd~  257 (268)
                      +.. +.++.+.+ ++++|++|+ |+.+++|+.
T Consensus       242 ~~~~v~s~~fs~-d~~~la~g~-d~~~~~~~~  271 (371)
T d1k8kc_         242 ETLPLLAVTFIT-ESSLVAAGH-DCFPVLFTY  271 (371)
T ss_dssp             SSCCEEEEEEEE-TTEEEEEET-TSSCEEEEE
T ss_pred             ccccceeeeecC-CCCEEEEEc-CCceEEEEe
Confidence            554 45677776 588777666 555555443

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.1e-34  Score=245.37  Aligned_cols=207  Identities=15%  Similarity=0.133  Sum_probs=169.7

Q ss_pred             eeeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeE--EEeeCccCcEEEEEecCCCcEEEEeeCC
Q 024372            5 KVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWI--GTFEGHKGAVWSCCLDANALFSASGSAD   82 (268)
Q Consensus         5 ~~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~--~~~~~h~~~V~~~~~~~~~~~l~s~s~D   82 (268)
                      ++.....+.+|.++|++++|+|   +|++|++|+.|++|++||..+++..  ..+.+|...|.+++|+|++.++++++.|
T Consensus        40 ~~~~~~~l~gH~~~V~~l~fsp---~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d  116 (371)
T d1k8kc_          40 KWVQVHELKEHNGQVTGVDWAP---DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGS  116 (371)
T ss_dssp             EEEEEEEEECCSSCEEEEEEET---TTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CEEEEEEecCCCCCEEEEEECC---CCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeeccc
Confidence            4445566789999999999995   8899999999999999999887644  4557899999999999999999999999


Q ss_pred             CcEEEEeCCCCCeeeee-----ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCC-----------------CeE
Q 024372           83 FTAKLWDALTGDEKHSF-----EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP-----------------PRE  140 (268)
Q Consensus        83 ~~v~iw~~~~~~~~~~~-----~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~-----------------~~~  140 (268)
                      +++++|++.........     .|...|.+++|+|++++|++|+.|+.+++||.......                 ...
T Consensus       117 ~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (371)
T d1k8kc_         117 RVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFE  196 (371)
T ss_dssp             SSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEE
T ss_pred             CcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeee
Confidence            99999998765533222     36778999999999999999999999999997543210                 122


Q ss_pred             ecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCC-CCEEEEEECCCCcEEEEeCCCeEEEEeC
Q 024372          141 VGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITTADGSSVKFWDA  215 (268)
Q Consensus       141 ~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~~~v~~wd~  215 (268)
                      ...|.+.+.+++|+|++. .+++++.|+.|++||+++++++..+..+ .++.+++|+|++++++++.|+.+++|..
T Consensus       197 ~~~~~~~v~~~~~s~~g~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~d~~~~~~~~  271 (371)
T d1k8kc_         197 SSSSCGWVHGVCFSANGS-RVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTY  271 (371)
T ss_dssp             CCCCSSCEEEEEECSSSS-EEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEE
T ss_pred             ccCccCcEEEEEeecccc-cccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEEcCCceEEEEe
Confidence            245677899999999776 4566677899999999999999888754 5799999999999999988877666543

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-33  Score=239.04  Aligned_cols=242  Identities=21%  Similarity=0.297  Sum_probs=194.7

Q ss_pred             eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCC
Q 024372           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT   92 (268)
Q Consensus        13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~   92 (268)
                      .+|...|++++|+|   +|++|++|+.|++|++|+...++.+..+.+|...|.++++++++..+++++.++.+++||..+
T Consensus       118 ~~~~~~V~~l~~s~---~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~  194 (388)
T d1erja_         118 PSSDLYIRSVCFSP---DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT  194 (388)
T ss_dssp             -CCCCBEEEEEECT---TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             cCCCCCEEEEEECC---CCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccc
Confidence            47889999999985   899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeeeeeccCCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCCC------eEecCCcccEEEEEEeCCCCcEEEEee
Q 024372           93 GDEKHSFEHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPP------REVGNSSGSIRTVAWLHSDQTILSSCT  165 (268)
Q Consensus        93 ~~~~~~~~~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~~~~~~~  165 (268)
                      ........+.....++.+++ ++++|++|+.|+.|++||..++....      .....|.+.|.+++|+|++. ++++++
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~~  273 (388)
T d1erja_         195 GQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ-SVVSGS  273 (388)
T ss_dssp             TEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSS-EEEEEE
T ss_pred             cccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCC-EEEEEE
Confidence            88877777666666666655 88999999999999999987653221      12234678899999998765 556677


Q ss_pred             CCCeEEEEeCCCCceEE------------ee-cCCCCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeCCCCc-
Q 024372          166 DSGGVRLWDARSGKIVQ------------TL-ETKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNT-  230 (268)
Q Consensus       166 ~d~~i~iwd~~~~~~~~------------~~-~~~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~~~~-  230 (268)
                      .|+.|++||+++++...            .. .+...+.+++|+|++++|+++ .|+.|++||+++++++..+..+... 
T Consensus       274 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V  353 (388)
T d1erja_         274 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSV  353 (388)
T ss_dssp             TTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred             CCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCE
Confidence            78999999998764322            12 234569999999999998764 6899999999999999888876543 


Q ss_pred             eeeEE-----cCCCCCEEEeccCCCeEEEEECC
Q 024372          231 ESASL-----EPKLGNIFIAGGEDMWVHVFDFH  258 (268)
Q Consensus       231 ~~~~~-----~~~~~~~~~~gs~d~~i~~wd~~  258 (268)
                      ..+.+     +.+++.+|++||.|+.|++||++
T Consensus       354 ~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         354 ISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            33333     23368999999999999999984

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-33  Score=235.26  Aligned_cols=248  Identities=13%  Similarity=0.196  Sum_probs=193.0

Q ss_pred             cEEeeecC-CCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCe--------EEEeeCccCcEEEEEecCCCcEEEEe
Q 024372            9 PLVCHGHS-RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW--------IGTFEGHKGAVWSCCLDANALFSASG   79 (268)
Q Consensus         9 ~~~~~~h~-~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~--------~~~~~~h~~~V~~~~~~~~~~~l~s~   79 (268)
                      ...+.+|. .+|++++|+|. .+|++||+|+.|++|+|||...++.        ...+..|.++|.+++|++++.+++++
T Consensus        55 ~~~~~gh~~~~v~~v~fsP~-~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~  133 (325)
T d1pgua1          55 VVQFTGHGSSVVTTVKFSPI-KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVV  133 (325)
T ss_dssp             EEEECTTTTSCEEEEEECSS-TTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             eEEEeCCCCCCEEEEEEeeC-CCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCcccee
Confidence            34456774 68999999984 3688999999999999999876542        23456788999999999999988766


Q ss_pred             e--CCCcEEEEeCCCCCeeeeec-cCCeEEEEEECCCCC-EEEEeeCCCeEEEEECCCCCCCCeE--ecCCcccEEEEEE
Q 024372           80 S--ADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTH-LLLTGGFEKILRIFDLNRPDAPPRE--VGNSSGSIRTVAW  153 (268)
Q Consensus        80 s--~D~~v~iw~~~~~~~~~~~~-~~~~v~~v~~~~~~~-~l~s~~~d~~i~~~d~~~~~~~~~~--~~~~~~~v~~~~~  153 (268)
                      +  .++.+++|+..++.....+. |...|.+++|+|+++ .+++++.|+.+++||....+.....  ...+...|.+++|
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~  213 (325)
T d1pgua1         134 GEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEF  213 (325)
T ss_dssp             ECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEE
T ss_pred             eccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeee
Confidence            5  47889999999988877775 888999999999876 5778999999999998654322222  2245678999999


Q ss_pred             eCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCC-CCEEEEEEC---CCCcEEE-EeCCCeEEEEeCCCceeeeEEeCCC
Q 024372          154 LHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVS---RDGRYIT-TADGSSVKFWDANHFGLVKGYNMPC  228 (268)
Q Consensus       154 ~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~s---~~g~~l~-~~~~~~v~~wd~~~~~~~~~~~~~~  228 (268)
                      +|+.+.++++++.|+.|++||+++++++.++..+ .++..+.++   |+|++|+ ++.|+.|++||++..++++.+..+.
T Consensus       214 ~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~  293 (325)
T d1pgua1         214 SPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDK  293 (325)
T ss_dssp             CSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCT
T ss_pred             ccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecC
Confidence            9987788888888999999999999999988743 233333333   5666655 5679999999999999998887654


Q ss_pred             C---ceeeEEcCCCCCEEEeccCCCeEEEEEC
Q 024372          229 N---TESASLEPKLGNIFIAGGEDMWVHVFDF  257 (268)
Q Consensus       229 ~---~~~~~~~~~~~~~~~~gs~d~~i~~wd~  257 (268)
                      .   .....+.+..+.++++||.|+.|++||+
T Consensus       294 ~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         294 QQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             TCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             CcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            3   2233444434668999999999999995

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.3e-32  Score=225.56  Aligned_cols=244  Identities=18%  Similarity=0.286  Sum_probs=187.7

Q ss_pred             cEEeeecCCCe-eeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEE
Q 024372            9 PLVCHGHSRPV-VDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKL   87 (268)
Q Consensus         9 ~~~~~~h~~~v-~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~i   87 (268)
                      -..|.||.+.| ++++|     +|++||+|+.|++|+|||..+++++.++++|+++|.+++|++++ +|++|+.|++|++
T Consensus         5 ~~tL~GH~~~vitc~~~-----~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~-~l~s~s~D~~i~i   78 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF-----EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRV   78 (355)
T ss_dssp             EEEEECCSSSCEEEEEE-----ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTT-EEEEEETTCCEEE
T ss_pred             cEEECCcCCCcEEEEEE-----CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCC-EEEEEeccccccc
Confidence            34578999876 56666     46799999999999999999999999999999999999999864 7899999999999


Q ss_pred             EeCCCCCeeeeecc---CCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeE----------------------ec
Q 024372           88 WDALTGDEKHSFEH---KHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE----------------------VG  142 (268)
Q Consensus        88 w~~~~~~~~~~~~~---~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~----------------------~~  142 (268)
                      |+............   ........++++++.+++++.|+.|++||++........                      ..
T Consensus        79 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (355)
T d1nexb2          79 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR  158 (355)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEE
T ss_pred             ccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeee
Confidence            99988877665542   223556677889999999999999999998754321111                      01


Q ss_pred             CCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecC-CCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCcee
Q 024372          143 NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGL  220 (268)
Q Consensus       143 ~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~  220 (268)
                      .+...+...  .+ ++.+++.+..|+.|++||+++++.+..... ...+.++.++|++.++++ +.|+.|++||+++...
T Consensus       159 ~~~~~v~~~--~~-~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~  235 (355)
T d1nexb2         159 GHMASVRTV--SG-HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGEL  235 (355)
T ss_dssp             CCSSCEEEE--EE-ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCE
T ss_pred             ecccccccc--cc-ccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccc
Confidence            112222222  22 235666777889999999999999887764 456889999999988765 5789999999999888


Q ss_pred             eeEEeCCCCc-eeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEe
Q 024372          221 VKGYNMPCNT-ESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIA  264 (268)
Q Consensus       221 ~~~~~~~~~~-~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~  264 (268)
                      +..+..+... ..+.+   ++++|++|+.|+.|++||+.++++..
T Consensus       236 ~~~~~~h~~~v~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~  277 (355)
T d1nexb2         236 MYTLQGHTALVGLLRL---SDKFLVSAAADGSIRGWDANDYSRKF  277 (355)
T ss_dssp             EEEECCCSSCCCEEEE---CSSEEEEECTTSEEEEEETTTCCEEE
T ss_pred             cccccccccccccccc---ccceeeeeecccccccccccccceec
Confidence            8877765543 33333   36799999999999999998876643

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-32  Score=224.62  Aligned_cols=250  Identities=24%  Similarity=0.385  Sum_probs=182.6

Q ss_pred             ceeeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCC
Q 024372            4 RKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADF   83 (268)
Q Consensus         4 ~~~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~   83 (268)
                      .++..+.+|.||++.|.+ ++++   +|++||||+.|++|+|||..++++++++.+|++.|.+++|+++  ++++|+.|+
T Consensus         4 ~~~~~~~~l~GH~~~V~s-~~~~---~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~   77 (342)
T d2ovrb2           4 GELKSPKVLKGHDDHVIT-CLQF---CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDR   77 (342)
T ss_dssp             SCCCCCEEEECSTTSCEE-EEEE---ETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTS
T ss_pred             CCCCcCEEECCcCCceEE-EEEE---CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecc
Confidence            455677889999999864 2442   6889999999999999999999999999999999999999874  889999999


Q ss_pred             cEEEEeCCCCCeeeeecc-------------------------------CCe--------EEEEEECCCCCEEEEeeCCC
Q 024372           84 TAKLWDALTGDEKHSFEH-------------------------------KHI--------VRACAFSEDTHLLLTGGFEK  124 (268)
Q Consensus        84 ~v~iw~~~~~~~~~~~~~-------------------------------~~~--------v~~v~~~~~~~~l~s~~~d~  124 (268)
                      ++++|+............                               ...        .......+....+++++.|+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  157 (342)
T d2ovrb2          78 TLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDF  157 (342)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTS
T ss_pred             cccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCC
Confidence            999999866443221110                               000        01112233455778888999


Q ss_pred             eEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCC-CCEEEEEECCCCcEEE
Q 024372          125 ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYIT  203 (268)
Q Consensus       125 ~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~  203 (268)
                      .+++||...... ......|...+....+  ++ ..+++++.||.|++||++.++++..+..+ ..+.++.+++  ++++
T Consensus       158 ~i~~~d~~~~~~-~~~~~~~~~~~~~~~~--~~-~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~  231 (342)
T d2ovrb2         158 MVKVWDPETETC-LHTLQGHTNRVYSLQF--DG-IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILV  231 (342)
T ss_dssp             CEEEEEGGGTEE-EEEECCCSSCEEEEEE--CS-SEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--TEEE
T ss_pred             eEEEeeccccee-eEEEcCcccccccccC--CC-CEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC--CEEE
Confidence            999999865432 2334445555555443  33 45667788899999999999999888754 4477666655  4555


Q ss_pred             -EeCCCeEEEEeCCCceeeeEEeCCCC-c-eeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEeec
Q 024372          204 -TADGSSVKFWDANHFGLVKGYNMPCN-T-ESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       204 -~~~~~~v~~wd~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~~  266 (268)
                       ++.|+.|++||+...+....+..+.. . ...++.+ +++++++|+.|+.|++||+++|+.+..+
T Consensus       232 s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~s~Dg~i~iwd~~tg~~i~~~  296 (342)
T d2ovrb2         232 SGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF-NKNFVITSSDDGTVKLWDLKTGEFIRNL  296 (342)
T ss_dssp             EEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE-CSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             EEcCCCEEEEEecccccccccccccceeeeceeeccc-CCCeeEEEcCCCEEEEEECCCCCEEEEE
Confidence             56789999999988877766654322 2 2222333 5789999999999999999999987653

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.7e-31  Score=220.70  Aligned_cols=245  Identities=16%  Similarity=0.153  Sum_probs=189.8

Q ss_pred             CeeeEEEecCCCCCcEEEEEeCCCC-eEEeeCCCC--CeEEEeeCcc-CcEEEEEecC--CCcEEEEeeCCCcEEEEeCC
Q 024372           18 PVVDLFYSPITPDGFFLVSASKDSS-PMLRNGETG--DWIGTFEGHK-GAVWSCCLDA--NALFSASGSADFTAKLWDAL   91 (268)
Q Consensus        18 ~v~~~~f~~~~~dg~~l~s~s~d~~-i~iw~~~~~--~~~~~~~~h~-~~V~~~~~~~--~~~~l~s~s~D~~v~iw~~~   91 (268)
                      .+++++|+|   +|+.||.++.+.. ++.|+....  ..+..+.+|. ..|.+++|+|  ++.+++||+.||+|++||+.
T Consensus        19 ~~t~l~~~~---~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~   95 (325)
T d1pgua1          19 FTTHLSYDP---TTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWT   95 (325)
T ss_dssp             CCCCCEEET---TTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEE
T ss_pred             CeEEEEECC---CCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeec
Confidence            457899985   7889988876653 466765544  3467788884 6899999997  56799999999999999986


Q ss_pred             CCCeeee---------eccCCeEEEEEECCCCCEEEEee--CCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcE
Q 024372           92 TGDEKHS---------FEHKHIVRACAFSEDTHLLLTGG--FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTI  160 (268)
Q Consensus        92 ~~~~~~~---------~~~~~~v~~v~~~~~~~~l~s~~--~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  160 (268)
                      .+.....         ..+..+|.+++|+++++.+++++  .++.+++|+..++. ....+..|...+.+++|.++++.+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~  174 (325)
T d1pgua1          96 FDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGN-SLGEVSGHSQRINACHLKQSRPMR  174 (325)
T ss_dssp             EEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCC-EEEECCSCSSCEEEEEECSSSSCE
T ss_pred             CCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccc-cceeeeecccccccccccccccce
Confidence            5543221         13667899999999999888765  46779999987653 334555678899999999998888


Q ss_pred             EEEeeCCCeEEEEeCCCCceEEeec----CCCCEEEEEECCC-CcEEEE-eCCCeEEEEeCCCceeeeEEeCCCCc-eee
Q 024372          161 LSSCTDSGGVRLWDARSGKIVQTLE----TKSPVTSAEVSRD-GRYITT-ADGSSVKFWDANHFGLVKGYNMPCNT-ESA  233 (268)
Q Consensus       161 ~~~~~~d~~i~iwd~~~~~~~~~~~----~~~~v~~~~~s~~-g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~~~-~~~  233 (268)
                      +++++.|+.+++||.+.++....+.    +...+.+++|+|+ +.++++ +.|+.|++||+++.+.++.+..+... ...
T Consensus       175 ~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~  254 (325)
T d1pgua1         175 SMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGG  254 (325)
T ss_dssp             EEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSC
T ss_pred             EEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccc
Confidence            8888889999999999887766553    2356999999997 577665 57899999999999888877654332 222


Q ss_pred             E--EcCCCCCEEEeccCCCeEEEEECCCCcEEeec
Q 024372          234 S--LEPKLGNIFIAGGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       234 ~--~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~~  266 (268)
                      .  ...+++++|++|+.|+.|++||+++++.+..+
T Consensus       255 ~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~  289 (325)
T d1pgua1         255 IFALSWLDSQKFATVGADATIRVWDVTTSKCVQKW  289 (325)
T ss_dssp             EEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             eeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEE
Confidence            2  22236899999999999999999999988764

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8e-31  Score=223.20  Aligned_cols=248  Identities=17%  Similarity=0.181  Sum_probs=178.9

Q ss_pred             EeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC------eEEEeeCccCcEEEEE------ecC-CCcEEE
Q 024372           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD------WIGTFEGHKGAVWSCC------LDA-NALFSA   77 (268)
Q Consensus        11 ~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~------~~~~~~~h~~~V~~~~------~~~-~~~~l~   77 (268)
                      +..+|+++|.++++.     +++|+|||.|++|++||..+.+      .......|+..+..+.      ... +..+++
T Consensus         9 ~~~~H~~~I~~v~~~-----~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (393)
T d1sq9a_           9 AGKAHDADIFSVSAC-----NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA   83 (393)
T ss_dssp             ESSCSSSCEEEEEEC-----SSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             cCCcccCccEEEEEe-----CCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEE
Confidence            346999999999985     3589999999999999977653      2223334554443322      111 234678


Q ss_pred             EeeCCCcEEEEeCCCCCeeeee-----------ccCCeEEEEEECCC-----CCEEEEeeCCCeEEEEECCCCCC-----
Q 024372           78 SGSADFTAKLWDALTGDEKHSF-----------EHKHIVRACAFSED-----THLLLTGGFEKILRIFDLNRPDA-----  136 (268)
Q Consensus        78 s~s~D~~v~iw~~~~~~~~~~~-----------~~~~~v~~v~~~~~-----~~~l~s~~~d~~i~~~d~~~~~~-----  136 (268)
                      +++.|+.+++|++.........           .++..+..+++.++     +..+++++.|+.+++|++.....     
T Consensus        84 s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~  163 (393)
T d1sq9a_          84 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL  163 (393)
T ss_dssp             EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred             EEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCccccee
Confidence            9999999999997544321111           13445667777664     46789999999999999742110     


Q ss_pred             ----CC--------eEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeec-------CCCCEEEEEECC
Q 024372          137 ----PP--------REVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE-------TKSPVTSAEVSR  197 (268)
Q Consensus       137 ----~~--------~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-------~~~~v~~~~~s~  197 (268)
                          ..        .....+...+.+++|+|++  ++++|+.|++|+|||+++++++..++       +..+|.+++|+|
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp  241 (393)
T d1sq9a_         164 TLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP  241 (393)
T ss_dssp             TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS
T ss_pred             eeeeccceecccceecccCCCCcEEEEEECCCC--EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccc
Confidence                00        0011233457889998865  67788899999999999999877654       345799999999


Q ss_pred             CCcEEEEe-CCC---eEEEEeCCCceeeeEEeC-------------C-CCceeeEEcCCCCCEEEeccCCCeEEEEECCC
Q 024372          198 DGRYITTA-DGS---SVKFWDANHFGLVKGYNM-------------P-CNTESASLEPKLGNIFIAGGEDMWVHVFDFHT  259 (268)
Q Consensus       198 ~g~~l~~~-~~~---~v~~wd~~~~~~~~~~~~-------------~-~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~  259 (268)
                      +|++|+++ .|+   .|++||+++..++..+..             + ..+.+++++| ++++|++||.|+.|++||+++
T Consensus       242 dg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fsp-d~~~l~S~s~D~~v~vWd~~~  320 (393)
T d1sq9a_         242 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVKT  320 (393)
T ss_dssp             STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEEEETTT
T ss_pred             ccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCC-CCCeeEEECCCCEEEEEECCC
Confidence            99998875 444   599999998877776642             1 2345677777 699999999999999999999


Q ss_pred             CcEEeec
Q 024372          260 GEQIAIT  266 (268)
Q Consensus       260 g~~~~~~  266 (268)
                      |+.+.++
T Consensus       321 g~~~~~l  327 (393)
T d1sq9a_         321 KERITTL  327 (393)
T ss_dssp             TEEEEEE
T ss_pred             CCEEEEE
Confidence            9998775

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-29  Score=204.63  Aligned_cols=240  Identities=16%  Similarity=0.276  Sum_probs=184.5

Q ss_pred             eeeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCc
Q 024372            5 KVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFT   84 (268)
Q Consensus         5 ~~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~   84 (268)
                      .+.......+|...|++++|     ||++||||+.|++|+|||..+++++.+|++|++.|.+++|  ++.+|+||+.|++
T Consensus         4 ~~~~i~~~~~~~~~V~c~~~-----d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~   76 (293)
T d1p22a2           4 SLQRIHCRSETSKGVYCLQY-----DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDST   76 (293)
T ss_dssp             CCCCEECCCSSCCCEEEEEC-----CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSC
T ss_pred             eEEEEeccCCCCCCEEEEEE-----cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccc
Confidence            34444555689999998865     6889999999999999999999999999999999998877  5679999999999


Q ss_pred             EEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCC--eEecCCcccEEEEEEeCCCCcEEE
Q 024372           85 AKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP--REVGNSSGSIRTVAWLHSDQTILS  162 (268)
Q Consensus        85 v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~  162 (268)
                      +++|++..+............. ..+.+....++++..++.+++|+........  .....+...+..+.+.+   ..+.
T Consensus        77 i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~  152 (293)
T d1p22a2          77 VRVWDVNTGEMLNTLIHHCEAV-LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIV  152 (293)
T ss_dssp             EEEEESSSCCEEEEECCCCSCE-EEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET---TEEE
T ss_pred             cccccccccccccccccccccc-ccccccccceeecccccceeEeeccccccccccccccccccccccceecc---cccc
Confidence            9999999888776665444333 2344556678899999999999987544322  23345667777776653   2455


Q ss_pred             EeeCCCeEEEEeCCCCceEEeecCC-CCEEEEEECCCCcEEE-EeCCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCC
Q 024372          163 SCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYIT-TADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLG  240 (268)
Q Consensus       163 ~~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~-~~~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (268)
                      +++.|+.|++||+++++.+..+..+ ..+..+.+++  .+++ ++.|+.|++||++....+..+..+..... .+.+ ++
T Consensus       153 ~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~-~~~~-~~  228 (293)
T d1p22a2         153 SASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD--RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR-CIRF-DN  228 (293)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEET--TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE-EEEC-CS
T ss_pred             cccCCCceeeecCCCCcEEEEEcccccccccccCCC--CeEEEecCCCEEEEEecccceeeeeecccceeee-eccc-cc
Confidence            6677899999999999999888754 4466666654  4554 56789999999999888887776554433 2333 58


Q ss_pred             CEEEeccCCCeEEEEECCC
Q 024372          241 NIFIAGGEDMWVHVFDFHT  259 (268)
Q Consensus       241 ~~~~~gs~d~~i~~wd~~~  259 (268)
                      .+|++|+.|+.|++||+.+
T Consensus       229 ~~l~sg~~dg~i~iwd~~~  247 (293)
T d1p22a2         229 KRIVSGAYDGKIKVWDLVA  247 (293)
T ss_dssp             SEEEEEETTSCEEEEEHHH
T ss_pred             eEEEEEcCCCEEEEEECCC
Confidence            8999999999999999753

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.8e-30  Score=210.88  Aligned_cols=214  Identities=20%  Similarity=0.373  Sum_probs=172.8

Q ss_pred             CCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEE
Q 024372           51 GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIF  129 (268)
Q Consensus        51 ~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~  129 (268)
                      .+..++|+||+++|++++|+|++.+||||+.||+|++||+.++.....+. |..+|.+++|+|+++.+++|+.|+.+++|
T Consensus        45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~  124 (340)
T d1tbga_          45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY  124 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred             eeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecc
Confidence            35678899999999999999999999999999999999999999888775 78899999999999999999999999999


Q ss_pred             ECCCCCCCCe---EecCC-----------------------------------------cccEEEEEEeCCCCcEEEEee
Q 024372          130 DLNRPDAPPR---EVGNS-----------------------------------------SGSIRTVAWLHSDQTILSSCT  165 (268)
Q Consensus       130 d~~~~~~~~~---~~~~~-----------------------------------------~~~v~~~~~~~~~~~~~~~~~  165 (268)
                      +.........   ....+                                         ...+....+.+. ..+++++.
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  203 (340)
T d1tbga_         125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD-TRLFVSGA  203 (340)
T ss_dssp             ESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTT-SSEEEEEE
T ss_pred             cccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccc-cceeEEee
Confidence            9654321111   11111                                         112344444443 45666777


Q ss_pred             CCCeEEEEeCCCCceEEeecC-CCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCC---CceeeEEcCCCC
Q 024372          166 DSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPC---NTESASLEPKLG  240 (268)
Q Consensus       166 ~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~---~~~~~~~~~~~~  240 (268)
                      .|+.|++||+++++++.++.. ..++.+++|+|+++++++ +.|+.|++||++....+..+....   ....+.+++ ++
T Consensus       204 ~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~  282 (340)
T d1tbga_         204 CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SG  282 (340)
T ss_dssp             TTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECS-SS
T ss_pred             cCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECC-CC
Confidence            889999999999999998875 467999999999998876 578999999999988877765432   345666666 69


Q ss_pred             CEEEeccCCCeEEEEECCCCcEEeec
Q 024372          241 NIFIAGGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       241 ~~~~~gs~d~~i~~wd~~~g~~~~~~  266 (268)
                      ++|++|+.|+.|++||+.+++++..+
T Consensus       283 ~~l~~g~~dg~i~iwd~~~~~~~~~~  308 (340)
T d1tbga_         283 RLLLAGYDDFNCNVWDALKADRAGVL  308 (340)
T ss_dssp             CEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             CEEEEEECCCEEEEEECCCCcEEEEE
Confidence            99999999999999999999988764

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.8e-30  Score=211.45  Aligned_cols=245  Identities=15%  Similarity=0.084  Sum_probs=179.0

Q ss_pred             cEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEE---eeCccCcEEEEEecCC-CcEEEEeeCCCc
Q 024372            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGT---FEGHKGAVWSCCLDAN-ALFSASGSADFT   84 (268)
Q Consensus         9 ~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~---~~~h~~~V~~~~~~~~-~~~l~s~s~D~~   84 (268)
                      ..+..+|++.|++|+|+|   +|++||+||.|++|+|||+.+++....   ..+|.++|.+++|+|+ +.++++|+.|++
T Consensus         4 v~~~~~h~d~I~~l~fsp---~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~   80 (342)
T d1yfqa_           4 VQIEQAPKDYISDIKIIP---SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGE   80 (342)
T ss_dssp             EECSSCCSSCEEEEEEEG---GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSC
T ss_pred             EEcCCCCCCCEEEEEEeC---CCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccc
Confidence            334579999999999996   899999999999999999877653322   2369999999999976 468899999999


Q ss_pred             EEEEeCCCCCeeeeecc--------------------------------------------------CCeEEEEEECCCC
Q 024372           85 AKLWDALTGDEKHSFEH--------------------------------------------------KHIVRACAFSEDT  114 (268)
Q Consensus        85 v~iw~~~~~~~~~~~~~--------------------------------------------------~~~v~~v~~~~~~  114 (268)
                      |++|+............                                                  ........+.+++
T Consensus        81 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (342)
T d1yfqa_          81 ILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS  160 (342)
T ss_dssp             EEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECS
T ss_pred             eeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccC
Confidence            99999865443222110                                                  0011223445667


Q ss_pred             CEEEEeeCCCeEEEEECCCCCCCCe--EecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceE---------Ee
Q 024372          115 HLLLTGGFEKILRIFDLNRPDAPPR--EVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIV---------QT  183 (268)
Q Consensus       115 ~~l~s~~~d~~i~~~d~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~---------~~  183 (268)
                      ..+++++.|+.|++||+........  ..........+..+.+.++..+++++.||.+.+|+.......         ..
T Consensus       161 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~  240 (342)
T d1yfqa_         161 SRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC  240 (342)
T ss_dssp             SEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEEC
T ss_pred             CceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeee
Confidence            7888888899999998865543322  222334456677777777777888888899999998643211         11


Q ss_pred             e-------cCCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEE
Q 024372          184 L-------ETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVF  255 (268)
Q Consensus       184 ~-------~~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~w  255 (268)
                      .       .+...+++++|+|++++|++ +.|+.|++||+++.+.++.+.........++.+ +++++++|+.|..+++|
T Consensus       241 ~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~-~~~~l~~a~sdd~~~~~  319 (342)
T d1yfqa_         241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIAC-SDNILCLATSDDTFKTN  319 (342)
T ss_dssp             CCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEE-CSSEEEEEEECTHHHHC
T ss_pred             eeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCCCCEEEEEEe-CCCEEEEEEcCCcEEEe
Confidence            1       11245899999999988875 578999999999998888776554555666676 68999999888888888


Q ss_pred             EC
Q 024372          256 DF  257 (268)
Q Consensus       256 d~  257 (268)
                      ..
T Consensus       320 ~~  321 (342)
T d1yfqa_         320 AA  321 (342)
T ss_dssp             SS
T ss_pred             ee
Confidence            64

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=4.4e-30  Score=208.74  Aligned_cols=231  Identities=15%  Similarity=0.153  Sum_probs=169.6

Q ss_pred             cEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEE
Q 024372            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLW   88 (268)
Q Consensus         9 ~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw   88 (268)
                      ...|.||+++|++++|+|       |+||+.||+|++||..++     .++|+..|.+++++++. .+++++.|+++++|
T Consensus         6 i~~l~gH~~~I~~l~~s~-------l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w   72 (287)
T d1pgua2           6 LKTISGHNKGITALTVNP-------LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVN   72 (287)
T ss_dssp             EEEECCCSSCEEEEETTT-------TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCSTT-CCEEEETTTEEEET
T ss_pred             eEEECCCCCceEEEEECc-------EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCCC-eEEEEeeccccccc
Confidence            346789999999999974       899999999999998764     46899999999998765 56899999999999


Q ss_pred             eCCCCCe----------------------------------eeeeccCCeEEEEEECCCCCEEEEeeCC-CeEEEEECCC
Q 024372           89 DALTGDE----------------------------------KHSFEHKHIVRACAFSEDTHLLLTGGFE-KILRIFDLNR  133 (268)
Q Consensus        89 ~~~~~~~----------------------------------~~~~~~~~~v~~v~~~~~~~~l~s~~~d-~~i~~~d~~~  133 (268)
                      ++...+.                                  ...+.....  ..++++++..+++++.+ +.+++|++..
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~v~~~~~~~  150 (287)
T d1pgua2          73 GITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSP--GSAVSLSQNYVAVGLEEGNTIQVFKLSD  150 (287)
T ss_dssp             TEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSC--EEEEEECSSEEEEEETTTSCEEEEETTE
T ss_pred             cccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccce--eeeeeccCcceeeeccccceeeeeeccc
Confidence            8643210                                  000011111  23456677778777766 5799999864


Q ss_pred             CCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEe-ec-CCCCEEEEEECCCC----------cE
Q 024372          134 PDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQT-LE-TKSPVTSAEVSRDG----------RY  201 (268)
Q Consensus       134 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~-~~-~~~~v~~~~~s~~g----------~~  201 (268)
                      ..........+.+.+++++|+|++. ++++++.||.|++||+++++.... +. +..++.+++|+|++          .+
T Consensus       151 ~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~  229 (287)
T d1pgua2         151 LEVSFDLKTPLRAKPSYISISPSET-YIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDL  229 (287)
T ss_dssp             EEEEEECSSCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCE
T ss_pred             cceeeeeeeccCCceeEEEeccCcc-ccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCe
Confidence            3322233345677899999998776 455667789999999999887654 33 45679999998754          46


Q ss_pred             EEE-eCCCeEEEEeCCC-ceeeeEEeCC-CCceeeEEcCCCCCEEEeccCCCeEEEEEC
Q 024372          202 ITT-ADGSSVKFWDANH-FGLVKGYNMP-CNTESASLEPKLGNIFIAGGEDMWVHVFDF  257 (268)
Q Consensus       202 l~~-~~~~~v~~wd~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~  257 (268)
                      +++ +.|+.|++||+++ .+.+..+..+ ..+..+.+.+  +..|+++|.|+.|++||+
T Consensus       230 l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~--~~~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         230 VATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET--PSTLVSSGADACIKRWNV  286 (287)
T ss_dssp             EEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEE--TTEEEEEETTSCEEEEEE
T ss_pred             eEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECC--CCEEEEEECCCeEEEEEE
Confidence            655 5789999999976 4455555443 3456666665  346899999999999996

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=1.2e-28  Score=201.10  Aligned_cols=209  Identities=16%  Similarity=0.200  Sum_probs=160.3

Q ss_pred             CCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeec--cCCeEEEEEECCCCCEEEEeeCCCeEEE
Q 024372           51 GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE--HKHIVRACAFSEDTHLLLTGGFEKILRI  128 (268)
Q Consensus        51 ~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~--~~~~v~~v~~~~~~~~l~s~~~d~~i~~  128 (268)
                      |++.+.+.||++.|.+++|+|++.+|+||+.|++|++||+.+++....+.  |...|.+++|+|++++ ++++.|+.+++
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~   80 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLKV   80 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE-EEEETTTEEEE
T ss_pred             CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecccee-ecccceeeEEE
Confidence            67788999999999999999999999999999999999999998887764  7789999999999975 56677999999


Q ss_pred             EECCCCCCC--CeEecC-------------------------------------CcccEEEEEEeCCCCcEEEEeeCCCe
Q 024372          129 FDLNRPDAP--PREVGN-------------------------------------SSGSIRTVAWLHSDQTILSSCTDSGG  169 (268)
Q Consensus       129 ~d~~~~~~~--~~~~~~-------------------------------------~~~~v~~~~~~~~~~~~~~~~~~d~~  169 (268)
                      |+.......  ......                                     ....+.+++++|++. ++++++.|+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g~~dg~  159 (299)
T d1nr0a2          81 VPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQ-FVAVGGQDSK  159 (299)
T ss_dssp             ECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSC-EEEEEETTSE
T ss_pred             eccCCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence            996532110  000000                                     112345667776554 5667778899


Q ss_pred             EEEEeCCCCceEE--eecCCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeee---EEeCCC-CceeeEEcCCCCCE
Q 024372          170 VRLWDARSGKIVQ--TLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVK---GYNMPC-NTESASLEPKLGNI  242 (268)
Q Consensus       170 i~iwd~~~~~~~~--~~~~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~  242 (268)
                      |++||+++++...  ...+..++.+++++|+++++++ +.++.|++||+.+...+.   .+..+. .+..++++| ++++
T Consensus       160 i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~  238 (299)
T d1nr0a2         160 VHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP-DNVR  238 (299)
T ss_dssp             EEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECT-TSSE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence            9999998876543  4456778999999999998875 468999999987654432   223333 345566776 6999


Q ss_pred             EEeccCCCeEEEEECCCCcE
Q 024372          243 FIAGGEDMWVHVFDFHTGEQ  262 (268)
Q Consensus       243 ~~~gs~d~~i~~wd~~~g~~  262 (268)
                      |++|+.|+.|++||+++++.
T Consensus       239 l~sgs~dg~i~iwd~~~~~~  258 (299)
T d1nr0a2         239 LATGSLDNSVIVWNMNKPSD  258 (299)
T ss_dssp             EEEEETTSCEEEEETTCTTS
T ss_pred             eEEEcCCCEEEEEECCCCCc
Confidence            99999999999999987654

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.1e-28  Score=201.31  Aligned_cols=249  Identities=20%  Similarity=0.331  Sum_probs=180.9

Q ss_pred             eeeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCcc--CcEEEEEecCCCcEEEEeeCC
Q 024372            5 KVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHK--GAVWSCCLDANALFSASGSAD   82 (268)
Q Consensus         5 ~~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~--~~V~~~~~~~~~~~l~s~s~D   82 (268)
                      .......+.+|+++|++++|+|   + .+|++|+.|+++++|+....+.......+.  .....+.+.+++.++++++.|
T Consensus        42 ~~~~~~~l~~H~~~V~~l~~s~---~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  117 (355)
T d1nexb2          42 NKKFLLQLSGHDGGVWALKYAH---G-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRD  117 (355)
T ss_dssp             TTEEEEEEECCSSCEEEEEEET---T-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETT
T ss_pred             CCcEEEEEECCCCCEEEEEEcC---C-CEEEEEecccccccccccccccccccccccccccccccccccccceeeeecCC
Confidence            3445566789999999999985   4 489999999999999999988776665433  344556678889999999999


Q ss_pred             CcEEEEeCCCCCeeeeec------------------------cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCC
Q 024372           83 FTAKLWDALTGDEKHSFE------------------------HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP  138 (268)
Q Consensus        83 ~~v~iw~~~~~~~~~~~~------------------------~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~  138 (268)
                      ++|++|++.+........                        |...+  ..+.++++.++++..|+.+++||+++.+. .
T Consensus       118 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~d~~i~~~d~~~~~~-~  194 (355)
T d1nexb2         118 NTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV--RTVSGHGNIVVSGSYDNTLIVWDVAQMKC-L  194 (355)
T ss_dssp             SEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCE--EEEEEETTEEEEEETTSCEEEEETTTTEE-E
T ss_pred             CcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccc--cccccccceeeeecccceeeeeecccccc-e
Confidence            999999997655332211                        11122  33456788999999999999999876542 2


Q ss_pred             eEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCC-CCEEEEEECCCCcEEE-EeCCCeEEEEeCC
Q 024372          139 REVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYIT-TADGSSVKFWDAN  216 (268)
Q Consensus       139 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~-~~~~~~v~~wd~~  216 (268)
                      .....+...+.++.+++.+.. +++++.|+.|++||+++++++..+..+ ..+.++.+++  ++++ ++.|+.|++||++
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~  271 (355)
T d1nexb2         195 YILSGHTDRIYSTIYDHERKR-CISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDAN  271 (355)
T ss_dssp             EEECCCSSCEEEEEEETTTTE-EEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETT
T ss_pred             eeeecccccccccccccccee-eecccccceEEeeecccccccccccccccccccccccc--ceeeeeeccccccccccc
Confidence            334455667888888887765 555667899999999999999888754 5688888875  4555 5678999999998


Q ss_pred             CceeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEee
Q 024372          217 HFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~  265 (268)
                      +......+.. .....+.+.++++.++++| .|+.|++||+++|+++..
T Consensus       272 ~~~~~~~~~~-~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~  318 (355)
T d1nexb2         272 DYSRKFSYHH-TNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHA  318 (355)
T ss_dssp             TCCEEEEEEC-TTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCS
T ss_pred             ccceeccccc-CCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEE
Confidence            8765444333 2334444455467766665 588999999999998753

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=2.1e-28  Score=199.03  Aligned_cols=201  Identities=26%  Similarity=0.451  Sum_probs=173.2

Q ss_pred             cEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEE
Q 024372            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLW   88 (268)
Q Consensus         9 ~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw   88 (268)
                      ...+.+|...+.++.|+|   ++.++++++.|+.+++|+..+++.+..+.+|...+..+++++++.++++++.|+.+++|
T Consensus        94 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~  170 (317)
T d1vyhc1          94 IRTMHGHDHNVSSVSIMP---NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW  170 (317)
T ss_dssp             EECCCCCSSCEEEEEECS---SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             ccccccccccceeeeccC---CCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEE
Confidence            344468999999999985   88899999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCeeeeec-cCCeEEEEEECCCC--------------------CEEEEeeCCCeEEEEECCCCCCCCeEecCCccc
Q 024372           89 DALTGDEKHSFE-HKHIVRACAFSEDT--------------------HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGS  147 (268)
Q Consensus        89 ~~~~~~~~~~~~-~~~~v~~v~~~~~~--------------------~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~  147 (268)
                      +..++.....+. +...+.++.|+|+.                    ..+++++.|+.|++||++++.. ...+..|...
T Consensus       171 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~-~~~~~~~~~~  249 (317)
T d1vyhc1         171 VVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC-LMTLVGHDNW  249 (317)
T ss_dssp             ETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEE-EEEEECCSSC
T ss_pred             eeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcE-EEEEeCCCCC
Confidence            999988877664 66778888887653                    5789999999999999986543 3445567889


Q ss_pred             EEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecC-CCCEEEEEECCCCcEEEE-eCCCeEEEEe
Q 024372          148 IRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITT-ADGSSVKFWD  214 (268)
Q Consensus       148 v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~-~~~~~v~~wd  214 (268)
                      +.+++++|++.. +++++.||.|+|||+++++++.++.. ..+|.+++|+|++++|++ +.|+.|++||
T Consensus       250 v~~~~~~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         250 VRGVLFHSGGKF-ILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEEEEECSSSSC-EEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEEEEECCCCCE-EEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            999999987765 55566789999999999999999875 567999999999988765 5789999997

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=8e-26  Score=185.74  Aligned_cols=238  Identities=22%  Similarity=0.344  Sum_probs=169.0

Q ss_pred             eecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEec----------------
Q 024372            7 AVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLD----------------   70 (268)
Q Consensus         7 ~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~----------------   70 (268)
                      .....+.+|+++|.+++|+|     .+|++|+.|+++++|+............+...+......                
T Consensus        48 ~~~~~~~~h~~~V~~v~~~~-----~~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~  122 (342)
T d2ovrb2          48 KCLRTLVGHTGGVWSSQMRD-----NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVW  122 (342)
T ss_dssp             CEEEECCCCSSCEEEEEEET-----TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEE
T ss_pred             CEEEEEeCCCCCEEEEEeCC-----CccccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEe
Confidence            34455679999999999984     389999999999999988766554444444333332221                


Q ss_pred             ----------------------CCCcEEEEeeCCCcEEEEeCCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEE
Q 024372           71 ----------------------ANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILR  127 (268)
Q Consensus        71 ----------------------~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~  127 (268)
                                            +....++.++.|+.+++||.........+. |...+..  +.+++..+++|+.|+.|+
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~l~s~~~dg~i~  200 (342)
T d2ovrb2         123 DIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS--LQFDGIHVVSGSLDTSIR  200 (342)
T ss_dssp             ESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEE--EEECSSEEEEEETTSCEE
T ss_pred             ecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCccccccc--ccCCCCEEEEEeCCCeEE
Confidence                                  223345566666777777766555554443 3334443  455788999999999999


Q ss_pred             EEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecC----CCCEEEEEECCCCcEEE
Q 024372          128 IFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET----KSPVTSAEVSRDGRYIT  203 (268)
Q Consensus       128 ~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~----~~~v~~~~~s~~g~~l~  203 (268)
                      +||++..+ .......|...+.++.+.+   .++++++.|+.|++||+...+....+..    ...+.++.++|  ++++
T Consensus       201 ~~d~~~~~-~~~~~~~~~~~v~~~~~~~---~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  274 (342)
T d2ovrb2         201 VWDVETGN-CIHTLTGHQSLTSGMELKD---NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK--NFVI  274 (342)
T ss_dssp             EEETTTCC-EEEEECCCCSCEEEEEEET---TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS--SEEE
T ss_pred             Eeecccce-eeeEecccccceeEEecCC---CEEEEEcCCCEEEEEecccccccccccccceeeeceeecccCC--CeeE
Confidence            99997654 3455556778888888764   3677788889999999999888777653    23466666654  4554


Q ss_pred             -EeCCCeEEEEeCCCceeeeEEeCC------CCceeeEEcCCCCCEEEeccCCC----eEEEEECC
Q 024372          204 -TADGSSVKFWDANHFGLVKGYNMP------CNTESASLEPKLGNIFIAGGEDM----WVHVFDFH  258 (268)
Q Consensus       204 -~~~~~~v~~wd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~gs~d~----~i~~wd~~  258 (268)
                       ++.|+.|++||+++++.++.+...      ..+.+++++| ++.++++|+.||    .|++||+.
T Consensus       275 s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~-~~~~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         275 TSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS-SEEEEEEECSSSSSCCEEEEEECC
T ss_pred             EEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECC-CCCEEEEEeCCCCCeeEEEEEeCC
Confidence             567899999999999888877531      1245667766 688999998887    49999986

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.95  E-value=5.3e-26  Score=189.08  Aligned_cols=189  Identities=12%  Similarity=0.030  Sum_probs=155.2

Q ss_pred             eEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCC--CcEEEEeCCCCCeeee
Q 024372           21 DLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD--FTAKLWDALTGDEKHS   98 (268)
Q Consensus        21 ~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D--~~v~iw~~~~~~~~~~   98 (268)
                      +-.|+|  .||+++|+++. +.+.+|+...++.+. + +|.+.|.+++|+||+++|++++.+  ..|++||..++.....
T Consensus         7 ~~~fSP--~dG~~~a~~~~-g~v~v~d~~~~~~~~-~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~   81 (360)
T d1k32a3           7 AEDFSP--LDGDLIAFVSR-GQAFIQDVSGTYVLK-V-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKF   81 (360)
T ss_dssp             EEEEEE--CGGGCEEEEET-TEEEEECTTSSBEEE-C-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEEC
T ss_pred             cccccC--CCCCEEEEEEC-CeEEEEECCCCcEEE-c-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEe
Confidence            456885  38999998875 689999999887765 3 699999999999999998877655  3799999999988888


Q ss_pred             eccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEe---------eCCCe
Q 024372           99 FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC---------TDSGG  169 (268)
Q Consensus        99 ~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---------~~d~~  169 (268)
                      ..|...+.+++|+|+++.|++++.++.+++|++..... ......+...+.+++|+|++..++.+.         ..++.
T Consensus        82 ~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~  160 (360)
T d1k32a3          82 EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP-TVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQA  160 (360)
T ss_dssp             CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-EEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEE
T ss_pred             eCCCceEEeeeecccccccceeccccccccccccccce-eeeeecccccccchhhccceeeeeeeccccccceeeccccc
Confidence            88999999999999999999999999999999976542 344455667788899999888766543         23357


Q ss_pred             EEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEE-eCCCeEEEEeC
Q 024372          170 VRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDA  215 (268)
Q Consensus       170 i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~  215 (268)
                      +++||+++++......+...+..++++|+|++|+. +.++.+++||.
T Consensus       161 ~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~  207 (360)
T d1k32a3         161 IHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDR  207 (360)
T ss_dssp             EEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECS
T ss_pred             eeeeccccCceeeecccccccccccccCCCCEEEEEeCCCceEcccc
Confidence            99999999988887777778889999999998775 56677777764

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=6.2e-27  Score=198.92  Aligned_cols=227  Identities=15%  Similarity=0.147  Sum_probs=164.5

Q ss_pred             cCCCeeeEEEecCC--CCCcEEEEEeCCCCeEEeeCCCCC---------------eEE---EeeCccCcEEEEEecCCCc
Q 024372           15 HSRPVVDLFYSPIT--PDGFFLVSASKDSSPMLRNGETGD---------------WIG---TFEGHKGAVWSCCLDANAL   74 (268)
Q Consensus        15 h~~~v~~~~f~~~~--~dg~~l~s~s~d~~i~iw~~~~~~---------------~~~---~~~~h~~~V~~~~~~~~~~   74 (268)
                      |...+..++|.+..  +.+.++++++.|+++++|++....               ...   ....+...+.+++|+|++ 
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-  196 (393)
T d1sq9a_         118 KKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-  196 (393)
T ss_dssp             GGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-
T ss_pred             CCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-
Confidence            55667777776532  346899999999999999864210               111   123455668899999987 


Q ss_pred             EEEEeeCCCcEEEEeCCCCCeeeeec-------cCCeEEEEEECCCCCEEEEeeCCC---eEEEEECCCCCCCCe-----
Q 024372           75 FSASGSADFTAKLWDALTGDEKHSFE-------HKHIVRACAFSEDTHLLLTGGFEK---ILRIFDLNRPDAPPR-----  139 (268)
Q Consensus        75 ~l~s~s~D~~v~iw~~~~~~~~~~~~-------~~~~v~~v~~~~~~~~l~s~~~d~---~i~~~d~~~~~~~~~-----  139 (268)
                      ++|+|+.|++|++||+.++++...+.       |..+|++++|+|++++|++|+.|+   .|++||++++.....     
T Consensus       197 ~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~  276 (393)
T d1sq9a_         197 LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPT  276 (393)
T ss_dssp             EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC-
T ss_pred             EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeecccc
Confidence            78999999999999999988766543       778999999999999999999887   499999876532211     


Q ss_pred             -------EecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCC-CE----EEEEECCCCcEEEEeCC
Q 024372          140 -------EVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS-PV----TSAEVSRDGRYITTADG  207 (268)
Q Consensus       140 -------~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~-~v----~~~~~s~~g~~l~~~~~  207 (268)
                             ....|.+.|++++|+|++. ++++++.|++|+|||++++++++++..|. .|    ..++++|++..++++..
T Consensus       277 ~~~~~~~~~~gH~~~V~~l~fspd~~-~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~  355 (393)
T d1sq9a_         277 HSSQASLGEFAHSSWVMSLSFNDSGE-TLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGV  355 (393)
T ss_dssp             -------CCBSBSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCE
T ss_pred             ccccceeeeecccCceeeeccCCCCC-eeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEccc
Confidence                   1235788999999998765 56677888999999999999999998653 23    35789999987754332


Q ss_pred             CeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEEC
Q 024372          208 SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDF  257 (268)
Q Consensus       208 ~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~  257 (268)
                      -.+++|+...             ... ......+.|++++.|+.|++|..
T Consensus       356 ~~~~~~~~~~-------------~~~-~~~~~~~~~~~~~~d~~ir~~~~  391 (393)
T d1sq9a_         356 FDVKFLKKGW-------------RSG-MGADLNESLCCVCLDRSIRWFRE  391 (393)
T ss_dssp             EEEEEECTTT-------------SBS-TTCTTSCEEEEEETTTEEEEEEE
T ss_pred             ceEEECccCc-------------eec-cccCCCCEEEEEEcCCeEEEEeC
Confidence            1222222111             000 11124667999999999999974

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.7e-24  Score=173.96  Aligned_cols=235  Identities=18%  Similarity=0.298  Sum_probs=172.7

Q ss_pred             eeeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCc
Q 024372            5 KVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFT   84 (268)
Q Consensus         5 ~~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~   84 (268)
                      .......+.+|+++|++++|     ++++|++|+.|+++++|+...+........+.....  .+.+....++++..++.
T Consensus        44 ~~~~~~~l~~H~~~V~~v~~-----~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  116 (293)
T d1p22a2          44 TLECKRILTGHTGSVLCLQY-----DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL--HLRFNNGMMVTCSKDRS  116 (293)
T ss_dssp             SCCEEEEECCCSSCEEEEEC-----CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEE--EEECCTTEEEEEETTSC
T ss_pred             CCcEEEEEecCCCCEeeeec-----ccceeecccccccccccccccccccccccccccccc--cccccccceeecccccc
Confidence            34455567899999999988     457999999999999999999988777765555443  34445567889999999


Q ss_pred             EEEEeCCCCCeeee----eccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcE
Q 024372           85 AKLWDALTGDEKHS----FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTI  160 (268)
Q Consensus        85 v~iw~~~~~~~~~~----~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  160 (268)
                      +++|+.........    ..|...+..+.+.+  ..+++++.|+.+++||+++.+. ......+...+..+.+.+   ..
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~d~~i~~~d~~~~~~-~~~~~~~~~~v~~~~~~~---~~  190 (293)
T d1p22a2         117 IAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWNTSTCEF-VRTLNGHKRGIACLQYRD---RL  190 (293)
T ss_dssp             EEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEEET---TE
T ss_pred             eeEeeccccccccccccccccccccccceecc--cccccccCCCceeeecCCCCcE-EEEEcccccccccccCCC---Ce
Confidence            99999987664332    23666777776654  4678899999999999986543 334445566777776643   35


Q ss_pred             EEEeeCCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCC---------ceeeeEEeCCCC-
Q 024372          161 LSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANH---------FGLVKGYNMPCN-  229 (268)
Q Consensus       161 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~---------~~~~~~~~~~~~-  229 (268)
                      ++++..|+.|++||+++.+.+..+..+.... ..+++++.++++ +.|+.|++||++.         ..+++.+..+.. 
T Consensus       191 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v-~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~  269 (293)
T d1p22a2         191 VVSGSSDNTIRLWDIECGACLRVLEGHEELV-RCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGR  269 (293)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECCCSSCE-EEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSC
T ss_pred             EEEecCCCEEEEEecccceeeeeecccceee-eeccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCC
Confidence            6677788999999999999998887654432 245667777665 5789999999743         234555554443 


Q ss_pred             ceeeEEcCCCCCEEEeccCCCeEEEEE
Q 024372          230 TESASLEPKLGNIFIAGGEDMWVHVFD  256 (268)
Q Consensus       230 ~~~~~~~~~~~~~~~~gs~d~~i~~wd  256 (268)
                      +.++.+   ++.+|++||.|+.|++||
T Consensus       270 V~~v~~---d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         270 VFRLQF---DEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             CCCEEE---CSSCEEECCSSSEEEEEC
T ss_pred             EEEEEE---cCCEEEEEecCCEEEEeC
Confidence            344554   367899999999999997

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.95  E-value=4.3e-24  Score=173.28  Aligned_cols=243  Identities=15%  Similarity=0.140  Sum_probs=197.2

Q ss_pred             CCeeeEEEecCCCCCcEE-EEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEE-EEeeCCCcEEEEeCCCCC
Q 024372           17 RPVVDLFYSPITPDGFFL-VSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFS-ASGSADFTAKLWDALTGD   94 (268)
Q Consensus        17 ~~v~~~~f~~~~~dg~~l-~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l-~s~s~D~~v~iw~~~~~~   94 (268)
                      ..+.+++|+|   ||++| ++++.+++|++||..+++.+.++..|.. +..+++++++.++ +++..++.+++|+..++.
T Consensus        32 ~~p~~va~sp---dG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (301)
T d1l0qa2          32 SNPMGAVISP---DGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT  107 (301)
T ss_dssp             SSEEEEEECT---TSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             CCceEEEEeC---CCCEEEEEECCCCEEEEEECCCCceeeeeecccc-ccccccccccccccccccccceeeecccccce
Confidence            4567899985   99887 5677899999999999999999988764 5789999998755 566788899999999999


Q ss_pred             eeeeeccCCeEEEEEECCCCCEEE-EeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEE
Q 024372           95 EKHSFEHKHIVRACAFSEDTHLLL-TGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLW  173 (268)
Q Consensus        95 ~~~~~~~~~~v~~v~~~~~~~~l~-s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iw  173 (268)
                      ....+.+.....++.|+|++..++ ++..++.+.+|+..+... ..... .......+.+.+++..+++++.+.+.+.+|
T Consensus       108 ~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (301)
T d1l0qa2         108 VAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV-INTVS-VGRSPKGIAVTPDGTKVYVANFDSMSISVI  185 (301)
T ss_dssp             EEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEE-CCSSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             eeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccce-eeecc-cCCCceEEEeeccccceeeecccccccccc
Confidence            888888888888999999998765 556788899999875432 22222 234577889999888888887777899999


Q ss_pred             eCCCCceEEeecCCCCEEEEEECCCCcEEEE--eC--CCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCE-EEeccC
Q 024372          174 DARSGKIVQTLETKSPVTSAEVSRDGRYITT--AD--GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNI-FIAGGE  248 (268)
Q Consensus       174 d~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~--~~--~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~gs~  248 (268)
                      +....+....+.....+..++++++++.+..  .+  ++.|++||+.+.+.+..+.....+..++++| +|++ +++++.
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~va~sp-dg~~l~va~~~  264 (301)
T d1l0qa2         186 DTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTP-DGKKVYVALSF  264 (301)
T ss_dssp             ETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECT-TSSEEEEEETT
T ss_pred             cccceeeeecccccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCCCCEEEEEEeC-CCCEEEEEECC
Confidence            9998888888877777889999999987643  22  4689999999999888888777778888888 5765 578888


Q ss_pred             CCeEEEEECCCCcEEeec
Q 024372          249 DMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       249 d~~i~~wd~~~g~~~~~~  266 (268)
                      |+.|++||+++|+.++..
T Consensus       265 ~~~i~v~D~~t~~~~~~~  282 (301)
T d1l0qa2         265 CNTVSVIDTATNTITATM  282 (301)
T ss_dssp             TTEEEEEETTTTEEEEEE
T ss_pred             CCeEEEEECCCCeEEEEE
Confidence            999999999999988653

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1.4e-25  Score=183.89  Aligned_cols=213  Identities=12%  Similarity=0.069  Sum_probs=144.9

Q ss_pred             CeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCe----eeeeccCCeEEEEEECCC-CCEEEEeeCCCeE
Q 024372           52 DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE----KHSFEHKHIVRACAFSED-THLLLTGGFEKIL  126 (268)
Q Consensus        52 ~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~----~~~~~~~~~v~~v~~~~~-~~~l~s~~~d~~i  126 (268)
                      +.+...++|++.|.+++|+|++.+||+||.|++|+|||+.++..    ...+.|..+|.+++|+|+ +.+|++|+.|+.+
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v   81 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence            45667789999999999999999999999999999999876543    334468999999999986 5689999999999


Q ss_pred             EEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceE----EeecC---CCCEEEEEECCCC
Q 024372          127 RIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIV----QTLET---KSPVTSAEVSRDG  199 (268)
Q Consensus       127 ~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~----~~~~~---~~~v~~~~~s~~g  199 (268)
                      ++|++............+........+. .+...+++++.++.+++||++++...    .....   ........+.+++
T Consensus        82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (342)
T d1yfqa_          82 LKVDLIGSPSFQALTNNEANLGICRICK-YGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS  160 (342)
T ss_dssp             EEECSSSSSSEEECBSCCCCSCEEEEEE-ETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECS
T ss_pred             eeeecccccccccccccccccccccccc-cccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccC
Confidence            9999876543222222222223333333 34456667778899999998754322    22211   1223344555555


Q ss_pred             cEEE-EeCCCeEEEEeCCCceeee-----------------------------------EEeC-----------------
Q 024372          200 RYIT-TADGSSVKFWDANHFGLVK-----------------------------------GYNM-----------------  226 (268)
Q Consensus       200 ~~l~-~~~~~~v~~wd~~~~~~~~-----------------------------------~~~~-----------------  226 (268)
                      ..++ ++.|+.|++||++......                                   .+..                 
T Consensus       161 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~  240 (342)
T d1yfqa_         161 SRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC  240 (342)
T ss_dssp             SEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEEC
T ss_pred             CceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeee
Confidence            5544 4567788888864321100                                   0000                 


Q ss_pred             ---------C-CCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEeec
Q 024372          227 ---------P-CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       227 ---------~-~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~~  266 (268)
                               + .....++++| ++.+|++||.|+.|++||+++++++..+
T Consensus       241 ~~~~~~~~~~~~~v~~l~~sp-~~~~lasg~~Dg~v~vWD~~~~~~l~~~  289 (342)
T d1yfqa_         241 HRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQTRKKIKNF  289 (342)
T ss_dssp             CCCCTTCCSSCCCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEEEEC
T ss_pred             eeeccCCCcccccceeEEecC-CccEEEEECCCCEEEEEECCCCcEEEEe
Confidence                     0 0112355666 6889999999999999999999988764

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.92  E-value=1.4e-23  Score=173.18  Aligned_cols=234  Identities=11%  Similarity=0.010  Sum_probs=164.9

Q ss_pred             CCCCcEEEEEeCCCCeEEeeCCCCCeEEEee-CccCcEEEEEecCCCcEE-EEeeCCCcEEEEeCCCCCeeeeeccC---
Q 024372           28 TPDGFFLVSASKDSSPMLRNGETGDWIGTFE-GHKGAVWSCCLDANALFS-ASGSADFTAKLWDALTGDEKHSFEHK---  102 (268)
Q Consensus        28 ~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~-~h~~~V~~~~~~~~~~~l-~s~s~D~~v~iw~~~~~~~~~~~~~~---  102 (268)
                      +++|+||++++.|++|.+||+.+++.++++. .|...+..++|+||++++ ++++.++.|++||+.+++....+...   
T Consensus         5 ~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~   84 (346)
T d1jmxb_           5 KAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVP   84 (346)
T ss_dssp             CTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCST
T ss_pred             CCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccc
Confidence            3699999999999999999999999999987 456677899999999876 67778999999999999887766422   


Q ss_pred             ----CeEEEEEECCCCCEEEEee------------CCCeEEEEECCCCCCCCe-EecCCcccEEEEEEeCCCCcEEEEee
Q 024372          103 ----HIVRACAFSEDTHLLLTGG------------FEKILRIFDLNRPDAPPR-EVGNSSGSIRTVAWLHSDQTILSSCT  165 (268)
Q Consensus       103 ----~~v~~v~~~~~~~~l~s~~------------~d~~i~~~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~  165 (268)
                          ..+..+.|+||++.+++++            .+..+.+||..+++.... ........+..+.+. ++..+++++ 
T Consensus        85 ~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-  162 (346)
T d1jmxb_          85 GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAA-DDGSLYVAG-  162 (346)
T ss_dssp             TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEEC-TTSCEEEES-
T ss_pred             cccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEec-CCCEEEEeC-
Confidence                1245788999999888765            467788888754322111 000011112222222 222233221 


Q ss_pred             CCCeEEEEeCCCCceEEee-------------------------------------------------------------
Q 024372          166 DSGGVRLWDARSGKIVQTL-------------------------------------------------------------  184 (268)
Q Consensus       166 ~d~~i~iwd~~~~~~~~~~-------------------------------------------------------------  184 (268)
                        +.+.+||+.+++.+..+                                                             
T Consensus       163 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (346)
T d1jmxb_         163 --PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTG  240 (346)
T ss_dssp             --SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTC
T ss_pred             --CcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCC
Confidence              23444444443333222                                                             


Q ss_pred             --------cCCCCEEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEE
Q 024372          185 --------ETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFD  256 (268)
Q Consensus       185 --------~~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd  256 (268)
                              .+...+..+.++|++.+++...++.|++||+.+++.++.+.....+..+++++ +|+++++|+.|+.|++||
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~va~s~-DG~~l~v~~~d~~v~v~D  319 (346)
T d1jmxb_         241 KTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDK-KGDKLYLGGTFNDLAVFN  319 (346)
T ss_dssp             CEEEEEEEECSSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEECSSCCCEEEECS-SSSCEEEESBSSEEEEEE
T ss_pred             ceEEEEeecccceeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEEEEcCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEE
Confidence                    12223556667777777666656789999999999998888777778888888 699999999999999999


Q ss_pred             CCCCcEEeec
Q 024372          257 FHTGEQIAIT  266 (268)
Q Consensus       257 ~~~g~~~~~~  266 (268)
                      +++++.+...
T Consensus       320 ~~t~~~i~~i  329 (346)
T d1jmxb_         320 PDTLEKVKNI  329 (346)
T ss_dssp             TTTTEEEEEE
T ss_pred             CccCCEEEEE
Confidence            9999998753

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.92  E-value=5.3e-23  Score=176.40  Aligned_cols=259  Identities=11%  Similarity=0.023  Sum_probs=178.1

Q ss_pred             cceeeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEE--Ee---eCccCcEEEEEecCCCcEE-
Q 024372            3 KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIG--TF---EGHKGAVWSCCLDANALFS-   76 (268)
Q Consensus         3 ~~~~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~--~~---~~h~~~V~~~~~~~~~~~l-   76 (268)
                      ..+......+..|. .+.+++|+|   ||++|++++.|+++++||+.+++...  ++   .+|.+.+.+++|+|||+++ 
T Consensus        49 ~~t~~~~~~l~~g~-~~~~vafSP---DGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~  124 (426)
T d1hzua2          49 GDSKKIVKVIDTGY-AVHISRMSA---SGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTI  124 (426)
T ss_dssp             TTTCSEEEEEECCS-SEEEEEECT---TSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEE
T ss_pred             CCCCcEEEEEeCCC-CeeEEEECC---CCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEE
Confidence            33334444555554 589999985   99999999999999999999987432  33   3677888888999999986 


Q ss_pred             EEeeCCCcEEEEeCCCCCeeeeec------------cCCeEEEEEECCCCCEEEEeeC-CCeEEEEECCCCCCCCeEecC
Q 024372           77 ASGSADFTAKLWDALTGDEKHSFE------------HKHIVRACAFSEDTHLLLTGGF-EKILRIFDLNRPDAPPREVGN  143 (268)
Q Consensus        77 ~s~s~D~~v~iw~~~~~~~~~~~~------------~~~~v~~v~~~~~~~~l~s~~~-d~~i~~~d~~~~~~~~~~~~~  143 (268)
                      +++..++++++||..++.+.....            +......+.+++++..++.... .+.+.+++.............
T Consensus       125 v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  204 (426)
T d1hzua2         125 AGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG  204 (426)
T ss_dssp             EEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEE
T ss_pred             EeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEec
Confidence            556689999999999988766543            2233455677787776665443 355656655443332222233


Q ss_pred             CcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEe----------------------------------------
Q 024372          144 SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQT----------------------------------------  183 (268)
Q Consensus       144 ~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~----------------------------------------  183 (268)
                      +...+..+.+.|++..++++...++.+.++|..+++.+..                                        
T Consensus       205 ~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~  284 (426)
T d1hzua2         205 AAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTD  284 (426)
T ss_dssp             CCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECC
T ss_pred             cCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeecc
Confidence            4556777888888887777776667777777766554322                                        


Q ss_pred             --------------ecCC-CCEEEEEECCCCcEEEEe--------CCCeEEEEeCCCceeeeEEe----------CCCCc
Q 024372          184 --------------LETK-SPVTSAEVSRDGRYITTA--------DGSSVKFWDANHFGLVKGYN----------MPCNT  230 (268)
Q Consensus       184 --------------~~~~-~~v~~~~~s~~g~~l~~~--------~~~~v~~wd~~~~~~~~~~~----------~~~~~  230 (268)
                                    +..+ ..+..++++|++++++..        .+++|++||+++.+...+..          .....
T Consensus       285 ~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv  364 (426)
T d1hzua2         285 PKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRV  364 (426)
T ss_dssp             TTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCE
T ss_pred             ccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccE
Confidence                          2211 236778999999998842        36799999998876654432          11123


Q ss_pred             eeeEEcCCCCCEE-Ee----ccCCCeEEEEECCCCcEEeec
Q 024372          231 ESASLEPKLGNIF-IA----GGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       231 ~~~~~~~~~~~~~-~~----gs~d~~i~~wd~~~g~~~~~~  266 (268)
                      ....|+| +|+++ ++    ++.|+.|++||.+|++++++.
T Consensus       365 ~~~~fSp-DGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i  404 (426)
T d1hzua2         365 VQPEYNK-RGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVV  404 (426)
T ss_dssp             EEEEECS-SSSEEEEEECCCTTSCCEEEEEETTTTEEEEEE
T ss_pred             EEEEECC-CCCEEEEEEecCCCCCCeEEEEECCCCeEEEEE
Confidence            4556777 68755 33    246889999999999987753

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.92  E-value=1.2e-22  Score=166.78  Aligned_cols=228  Identities=13%  Similarity=0.102  Sum_probs=173.6

Q ss_pred             cEEEEEeCCCCeEEeeCCCCCeEEEeeCc--cCcEEEEEecCCCcEE-EEeeCCCcEEEEeCCCCCeeeeeccC------
Q 024372           32 FFLVSASKDSSPMLRNGETGDWIGTFEGH--KGAVWSCCLDANALFS-ASGSADFTAKLWDALTGDEKHSFEHK------  102 (268)
Q Consensus        32 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~h--~~~V~~~~~~~~~~~l-~s~s~D~~v~iw~~~~~~~~~~~~~~------  102 (268)
                      .|+++++.|++|+|||..+++.+.++..+  ...+..++|+|||+++ ++++.++.|.+||+.+++.+..+...      
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            48999999999999999999999998754  3457789999999876 67788999999999999987776422      


Q ss_pred             CeEEEEEECCCCCEEEEeeC------------CCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeE
Q 024372          103 HIVRACAFSEDTHLLLTGGF------------EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (268)
Q Consensus       103 ~~v~~v~~~~~~~~l~s~~~------------d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i  170 (268)
                      ..+..++|+|+++.++++..            +..+.+||..+... ..... ....+..+++++++..+++++   +.+
T Consensus        82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~-~~~~~~~~~~s~dg~~l~~~~---~~~  156 (337)
T d1pbyb_          82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR-RKAFE-APRQITMLAWARDGSKLYGLG---RDL  156 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE-EEEEE-CCSSCCCEEECTTSSCEEEES---SSE
T ss_pred             cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeE-EEecc-ccCCceEEEEcCCCCEEEEEc---CCc
Confidence            23447899999999988763            56778888765432 22222 234567788899887776553   447


Q ss_pred             EEEeCCCCceEEeecC----------------------------------------------------------------
Q 024372          171 RLWDARSGKIVQTLET----------------------------------------------------------------  186 (268)
Q Consensus       171 ~iwd~~~~~~~~~~~~----------------------------------------------------------------  186 (268)
                      .+||..+++....+..                                                                
T Consensus       157 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (337)
T d1pbyb_         157 HVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREV  236 (337)
T ss_dssp             EEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEE
T ss_pred             ceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEe
Confidence            7888887765544321                                                                


Q ss_pred             ---CCCEEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEE
Q 024372          187 ---KSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (268)
Q Consensus       187 ---~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~  263 (268)
                         ...+..+.++|++.++.+. ++.|++||+++.+.++.......+..+.+++ +|++|++++.|+.|++||.+++|++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~-dG~~l~v~~~~~~i~v~D~~t~~~v  314 (337)
T d1pbyb_         237 RIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPLPHSYYSVNVST-DGSTVWLGGALGDLAAYDAETLEKK  314 (337)
T ss_dssp             EECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEECSSCCCEEEECT-TSCEEEEESBSSEEEEEETTTCCEE
T ss_pred             cCCCcceEEEEecccceEEEEc-cccEEEEECCCCcEEEEEcCCCCEEEEEECC-CCCEEEEEeCCCcEEEEECCCCcEE
Confidence               0112345566777776544 4689999999999999888877777888887 6999999999999999999999988


Q ss_pred             eec
Q 024372          264 AIT  266 (268)
Q Consensus       264 ~~~  266 (268)
                      ...
T Consensus       315 ~~i  317 (337)
T d1pbyb_         315 GQV  317 (337)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            753

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.3e-22  Score=164.07  Aligned_cols=197  Identities=14%  Similarity=0.211  Sum_probs=146.9

Q ss_pred             eeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC----------------------------------CCeEEEe
Q 024372           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET----------------------------------GDWIGTF   57 (268)
Q Consensus        12 ~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~----------------------------------~~~~~~~   57 (268)
                      ..+|+..|.+++|++    +..+++++.|+++++|+...                                  ++.+..+
T Consensus        42 ~~~h~~~V~~~~~~~----~~~~~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (287)
T d1pgua2          42 HQDHSNLIVSLDNSK----AQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSV  117 (287)
T ss_dssp             ECCCCSCEEEEECCS----TTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             CCCCCCCEEEEEecC----CCeEEEEeeccccccccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeec
Confidence            357889999998863    34678889999888886432                                  1122222


Q ss_pred             eCccCcEEEEEecCCCcEEEEeeCC-CcEEEEeCCCCCeeeee--ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCC
Q 024372           58 EGHKGAVWSCCLDANALFSASGSAD-FTAKLWDALTGDEKHSF--EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRP  134 (268)
Q Consensus        58 ~~h~~~V~~~~~~~~~~~l~s~s~D-~~v~iw~~~~~~~~~~~--~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~  134 (268)
                      ..+ ..+  .++++++..++.++.| +.+++|++.........  .+...+.+++|+|++++|++|+.|+.|++||+.++
T Consensus       118 ~~~-~~~--~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~  194 (287)
T d1pgua2         118 RLN-SPG--SAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR  194 (287)
T ss_dssp             ECS-SCE--EEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             ccc-cee--eeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccc
Confidence            211 222  3455667677666655 57999998765554444  36678999999999999999999999999998765


Q ss_pred             CCCCeEecCCcccEEEEEEeCCC---------CcEEEEeeCCCeEEEEeCCC-CceEEeec-CCCCEEEEEECCCCcEEE
Q 024372          135 DAPPREVGNSSGSIRTVAWLHSD---------QTILSSCTDSGGVRLWDARS-GKIVQTLE-TKSPVTSAEVSRDGRYIT  203 (268)
Q Consensus       135 ~~~~~~~~~~~~~v~~~~~~~~~---------~~~~~~~~~d~~i~iwd~~~-~~~~~~~~-~~~~v~~~~~s~~g~~l~  203 (268)
                      .........|.+.+.+++|+|.+         ..++++++.|++|+|||+++ ++.+..+. +...|.++.|+|++.+++
T Consensus       195 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~l~s  274 (287)
T d1pgua2         195 EVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVS  274 (287)
T ss_dssp             EEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTEEEE
T ss_pred             ccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCEEEE
Confidence            43333445678899999998744         45788888999999999977 55666665 456799999999998888


Q ss_pred             EeCCCeEEEEeC
Q 024372          204 TADGSSVKFWDA  215 (268)
Q Consensus       204 ~~~~~~v~~wd~  215 (268)
                      ++.|+.|++||+
T Consensus       275 ~g~D~~v~iW~i  286 (287)
T d1pgua2         275 SGADACIKRWNV  286 (287)
T ss_dssp             EETTSCEEEEEE
T ss_pred             EECCCeEEEEEE
Confidence            889999999995

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.91  E-value=4.9e-22  Score=164.81  Aligned_cols=157  Identities=12%  Similarity=0.076  Sum_probs=123.6

Q ss_pred             eecCCCeeeEEEecCCCCCcEEEEEeCCC--CeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeC
Q 024372           13 HGHSRPVVDLFYSPITPDGFFLVSASKDS--SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA   90 (268)
Q Consensus        13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~--~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~   90 (268)
                      .+|...|.+++|+|   ||++|++++.+.  .+++||..+++.. .+..|...|..++|+|++.++++++.++.+++|++
T Consensus        39 ~~~~~~v~~~~~sp---Dg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~  114 (360)
T d1k32a3          39 VPEPLRIRYVRRGG---DTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDL  114 (360)
T ss_dssp             CSCCSCEEEEEECS---SSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             ccCCCCEEEEEECC---CCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCceEEeeeecccccccceeccccccccccc
Confidence            37999999999985   999998877664  7899999888755 57789999999999999999999999999999999


Q ss_pred             CCCCeeeeec-cCCeEEEEEECCCCCEEEEe----------eCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCc
Q 024372           91 LTGDEKHSFE-HKHIVRACAFSEDTHLLLTG----------GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQT  159 (268)
Q Consensus        91 ~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~----------~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  159 (268)
                      .+++....+. +...+.+++|+|++++|+.+          ..++.+++||+..++  ......+...+..+.|+|++..
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~--~~~~~~~~~~~~~~~~spdg~~  192 (360)
T d1k32a3         115 ETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK--IFAATTENSHDYAPAFDADSKN  192 (360)
T ss_dssp             TTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE--EEECSCSSSBEEEEEECTTSCE
T ss_pred             cccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCc--eeeecccccccccccccCCCCE
Confidence            9988877665 56678899999999999854          345568999987542  2233344556777788887665


Q ss_pred             EEEEeeCCCeEEEEeCC
Q 024372          160 ILSSCTDSGGVRLWDAR  176 (268)
Q Consensus       160 ~~~~~~~d~~i~iwd~~  176 (268)
                      ++ .++.++.+++||..
T Consensus       193 l~-~~s~~~~~~~~d~~  208 (360)
T d1k32a3         193 LY-YLSYRSLDPSPDRV  208 (360)
T ss_dssp             EE-EEESCCCCCEECSS
T ss_pred             EE-EEeCCCceEccccc
Confidence            44 44556777777653

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.91  E-value=7.4e-21  Score=153.86  Aligned_cols=228  Identities=12%  Similarity=0.105  Sum_probs=182.3

Q ss_pred             EEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEE-EEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEEECC
Q 024372           34 LVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFS-ASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSE  112 (268)
Q Consensus        34 l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l-~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~  112 (268)
                      .++++.|++|.+||..+++.++++... +....++|+|+++++ ++++.++.|++||+.++..+..+.....+..+.|++
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~   83 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSP   83 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECT
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccccccccccc
Confidence            346788999999999999999999854 456789999999876 677889999999999999988887666778899999


Q ss_pred             CCCEEE-EeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCCCEE
Q 024372          113 DTHLLL-TGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVT  191 (268)
Q Consensus       113 ~~~~l~-s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~  191 (268)
                      +++.++ ++..++.+.+|+...++. ..... +.....++.++|++..+++++..++.+.+|+..+++.+..+.....+.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (301)
T d1l0qa2          84 DGKQVYVTNMASSTLSVIDTTSNTV-AGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPK  161 (301)
T ss_dssp             TSSEEEEEETTTTEEEEEETTTTEE-EEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEE
T ss_pred             ccccccccccccceeeeccccccee-eeecc-ccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCce
Confidence            988554 566788999999875432 23333 334567889999998888888888999999999999999888877889


Q ss_pred             EEEECCCCcEEEEe--CCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEec---cCCCeEEEEECCCCcEEee
Q 024372          192 SAEVSRDGRYITTA--DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAG---GEDMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       192 ~~~~s~~g~~l~~~--~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---s~d~~i~~wd~~~g~~~~~  265 (268)
                      .++++|+++.+..+  ++..+.+|+....+..........+....+.++ +..++.+   ..++.|++||..+++.+..
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~v~~~~~~~~~v~v~D~~t~~~~~~  239 (301)
T d1l0qa2         162 GIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPE-GTKAYVTNVDKYFNTVSMIDTGTNKITAR  239 (301)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTT-SSEEEEEEECSSCCEEEEEETTTTEEEEE
T ss_pred             EEEeeccccceeeecccccccccccccceeeeecccccCCcceeecccc-ccccccccccceeeeeeeeecCCCeEEEE
Confidence            99999999876543  457788999888887777777666677777774 6655443   3457899999999988764

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.90  E-value=6.8e-22  Score=169.96  Aligned_cols=175  Identities=11%  Similarity=-0.007  Sum_probs=132.4

Q ss_pred             eeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCe--EEEe---eCccCcEEEEEecCCCcEE-EEe
Q 024372            6 VAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW--IGTF---EGHKGAVWSCCLDANALFS-ASG   79 (268)
Q Consensus         6 ~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~--~~~~---~~h~~~V~~~~~~~~~~~l-~s~   79 (268)
                      ......+..| ..+.+++|+|   ||++|++++.|+++++||+.+++.  +.++   .+|.+.+.+.+|+|||+++ +++
T Consensus        52 ~~v~~~~~~g-~~~~~v~fSp---DG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~  127 (432)
T d1qksa2          52 YEIKTVLDTG-YAVHISRLSA---SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGA  127 (432)
T ss_dssp             CCEEEEEECS-SCEEEEEECT---TSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEE
T ss_pred             CcEEEEEeCC-CCeeEEEECC---CCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEc
Confidence            3344445555 3689999985   999999999999999999988763  3333   4677888888899999875 788


Q ss_pred             eCCCcEEEEeCCCCCeeeeec------------cCCeEEEEEECCCCCEE-EEeeCCCeEEEEECCCCCCCCeEecCCcc
Q 024372           80 SADFTAKLWDALTGDEKHSFE------------HKHIVRACAFSEDTHLL-LTGGFEKILRIFDLNRPDAPPREVGNSSG  146 (268)
Q Consensus        80 s~D~~v~iw~~~~~~~~~~~~------------~~~~v~~v~~~~~~~~l-~s~~~d~~i~~~d~~~~~~~~~~~~~~~~  146 (268)
                      +.++++++||..+++++..+.            +......+.++|+++.+ ++...++.+.+||....+...........
T Consensus       128 ~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~  207 (432)
T d1qksa2         128 YWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAER  207 (432)
T ss_dssp             EETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCS
T ss_pred             CCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccC
Confidence            899999999999998876553            23345678899998765 45667899999998654322212223344


Q ss_pred             cEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEee
Q 024372          147 SIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL  184 (268)
Q Consensus       147 ~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~  184 (268)
                      ....++++|++..+++++.+++.+.++|.++++.+..+
T Consensus       208 ~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~  245 (432)
T d1qksa2         208 FLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIE  245 (432)
T ss_dssp             SEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred             ccccceECCCCCEEEEeccccceEEEeecccceEEEEe
Confidence            67889999999888888888889999999987765543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.90  E-value=2.3e-21  Score=166.03  Aligned_cols=232  Identities=13%  Similarity=0.127  Sum_probs=162.7

Q ss_pred             CCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeee--ec----cCC
Q 024372           30 DGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHS--FE----HKH  103 (268)
Q Consensus        30 dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~--~~----~~~  103 (268)
                      .+.++++++.|++|++||..+++.+.++..|. .+..++|+|||+++++++.|+++++||+.+++....  +.    |..
T Consensus        31 ~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~  109 (426)
T d1hzua2          31 PNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARS  109 (426)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEE
T ss_pred             CeEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcc
Confidence            34467889999999999999999999999875 589999999999999999999999999998875433  22    344


Q ss_pred             eEEEEEECCCCCEEEE-eeCCCeEEEEECCCCCCCCeEecC-----------CcccEEEEEEeCCCCcEEEEeeCCCeEE
Q 024372          104 IVRACAFSEDTHLLLT-GGFEKILRIFDLNRPDAPPREVGN-----------SSGSIRTVAWLHSDQTILSSCTDSGGVR  171 (268)
Q Consensus       104 ~v~~v~~~~~~~~l~s-~~~d~~i~~~d~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~~~~~~~~d~~i~  171 (268)
                      .+.++.|+|||+.+++ +..++.+++||....... .....           +.+....+..++++..++.+..+.+.+.
T Consensus       110 ~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~  188 (426)
T d1hzua2         110 VESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPK-QIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVL  188 (426)
T ss_dssp             EEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEE-EEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred             eEEeeeecCCCCEEEEeecCCCeEEEEcCCcccee-EEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEE
Confidence            5666778899998755 458899999998765422 11111           2233445555666666666655566777


Q ss_pred             EEeCCCCce--EEeecCCCCEEEEEECCCCcEEEEe--CCCeEEEEeCCCceeeeEEe----------------------
Q 024372          172 LWDARSGKI--VQTLETKSPVTSAEVSRDGRYITTA--DGSSVKFWDANHFGLVKGYN----------------------  225 (268)
Q Consensus       172 iwd~~~~~~--~~~~~~~~~v~~~~~s~~g~~l~~~--~~~~v~~wd~~~~~~~~~~~----------------------  225 (268)
                      +++......  +........+..+.++|+++++..+  .+..+.++|....+.+..+.                      
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (426)
T d1hzua2         189 LVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVW  268 (426)
T ss_dssp             EEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEE
T ss_pred             EEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceE
Confidence            777665543  3334555668899999999887654  35667777766544332221                      


Q ss_pred             --------------------------------CCC-CceeeEEcCCCCCEEE-------eccCCCeEEEEECCCCcEEe
Q 024372          226 --------------------------------MPC-NTESASLEPKLGNIFI-------AGGEDMWVHVFDFHTGEQIA  264 (268)
Q Consensus       226 --------------------------------~~~-~~~~~~~~~~~~~~~~-------~gs~d~~i~~wd~~~g~~~~  264 (268)
                                                      .+. .+..+.++| ++++++       .++.|+.|+|||+++++++.
T Consensus       269 ~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sP-dg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~  346 (426)
T d1hzua2         269 STSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHP-KSSHLYVDTTFNPDARISQSVAVFDLKNLDAKY  346 (426)
T ss_dssp             EEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCT-TCSEEEECCTTCSSHHHHTCEEEEETTCTTSCC
T ss_pred             EeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCC-CCceEEEeecCCCCcccCCEEEEEECCCCCcCe
Confidence                                            111 123445555 688888       45678999999999887653

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.90  E-value=4.2e-21  Score=164.98  Aligned_cols=229  Identities=13%  Similarity=0.104  Sum_probs=168.2

Q ss_pred             CCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCee--eeec----cCC
Q 024372           30 DGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEK--HSFE----HKH  103 (268)
Q Consensus        30 dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~--~~~~----~~~  103 (268)
                      +..++++.+.|+++.+||..+++.++++..|. .+..++|+|||+++++++.|+++++||+.+++..  ..+.    |..
T Consensus        31 ~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~  109 (432)
T d1qksa2          31 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARS  109 (432)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEE
T ss_pred             CcEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCC
Confidence            44456999999999999999999999999874 6999999999999999999999999999887643  2332    334


Q ss_pred             eEEEEEECCCCCEE-EEeeCCCeEEEEECCCCCCCCeEe----------cCCcccEEEEEEeCCCCcEEEEeeCCCeEEE
Q 024372          104 IVRACAFSEDTHLL-LTGGFEKILRIFDLNRPDAPPREV----------GNSSGSIRTVAWLHSDQTILSSCTDSGGVRL  172 (268)
Q Consensus       104 ~v~~v~~~~~~~~l-~s~~~d~~i~~~d~~~~~~~~~~~----------~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~i  172 (268)
                      .+.+..|+|||+.| +++..++.+++||..+++......          ..+.+....+.++|++..++++..+++.|.+
T Consensus       110 ~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~  189 (432)
T d1qksa2         110 IETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILL  189 (432)
T ss_dssp             EEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred             eEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEE
Confidence            45556678899976 678889999999987654322111          1133456678889988888888888899999


Q ss_pred             EeCCCCceEE--eecCCCCEEEEEECCCCcEEEEe--CCCeEEEEeCCCceeeeEEeCCC-----CceeeEEcCCCCCEE
Q 024372          173 WDARSGKIVQ--TLETKSPVTSAEVSRDGRYITTA--DGSSVKFWDANHFGLVKGYNMPC-----NTESASLEPKLGNIF  243 (268)
Q Consensus       173 wd~~~~~~~~--~~~~~~~v~~~~~s~~g~~l~~~--~~~~v~~wd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~  243 (268)
                      ||..+.+...  .+.....+..++++|+|++++++  .+..+.++|.+..+.+..+....     ........+..+...
T Consensus       190 ~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~  269 (432)
T d1qksa2         190 VDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVW  269 (432)
T ss_dssp             EETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEE
T ss_pred             EEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCcee
Confidence            9998877544  45555568899999999976543  46789999999887776665422     111222223344445


Q ss_pred             Eec-cCCCeEEEEECCC
Q 024372          244 IAG-GEDMWVHVFDFHT  259 (268)
Q Consensus       244 ~~g-s~d~~i~~wd~~~  259 (268)
                      ++. ..|+.|.+|+..+
T Consensus       270 ~~~~lg~~~v~~~~~~~  286 (432)
T d1qksa2         270 ATSHMGDDSVALIGTDP  286 (432)
T ss_dssp             EEEBSSSSEEEEEECCT
T ss_pred             cccccCCceEEeccccc
Confidence            444 3477788887643

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=5.6e-20  Score=150.70  Aligned_cols=206  Identities=16%  Similarity=0.140  Sum_probs=154.6

Q ss_pred             ecCCCeeeEEEecCCCCCcEE-EEEeCCCCeEEeeCCCCCeEEEeeCccC-----cEEEEEecCCCcEEEEee-------
Q 024372           14 GHSRPVVDLFYSPITPDGFFL-VSASKDSSPMLRNGETGDWIGTFEGHKG-----AVWSCCLDANALFSASGS-------   80 (268)
Q Consensus        14 ~h~~~v~~~~f~~~~~dg~~l-~s~s~d~~i~iw~~~~~~~~~~~~~h~~-----~V~~~~~~~~~~~l~s~s-------   80 (268)
                      .+...+.+++|+|   ||++| ++++.++.|.+||..+++.+..+..+..     .+..++|+|++.+++.++       
T Consensus        31 ~~~~~~~~i~~sp---Dg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~  107 (337)
T d1pbyb_          31 DAGPTPMVPMVAP---GGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLEL  107 (337)
T ss_dssp             TCTTCCCCEEECT---TSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECS
T ss_pred             CCCCCccEEEECC---CCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCccee
Confidence            3445678999985   99987 5678899999999999999988876643     345678999999887665       


Q ss_pred             -----CCCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCe----------------
Q 024372           81 -----ADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR----------------  139 (268)
Q Consensus        81 -----~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~----------------  139 (268)
                           .+..+.+||..++.....+.....+..+.|+|+++.+++++.+  +.+||....+....                
T Consensus       108 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  185 (337)
T d1pbyb_         108 THFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDV  185 (337)
T ss_dssp             SCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBC
T ss_pred             eeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcCC--cceeeeecCcEEEEeecCCccccceecCCc
Confidence                 4678899999999998888888888899999999999988754  56787653210000                


Q ss_pred             -------------------------------------------------EecCCcccEEEEEEeCCCCcEEEEeeCCCeE
Q 024372          140 -------------------------------------------------EVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (268)
Q Consensus       140 -------------------------------------------------~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i  170 (268)
                                                                       ....+......+.+.+++. .+.+.  ++.|
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~i  262 (337)
T d1pbyb_         186 LAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKT-RAFGA--YNVL  262 (337)
T ss_dssp             CCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSS-EEEEE--ESEE
T ss_pred             ceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccce-EEEEc--cccE
Confidence                                                             0001111223334444443 33332  4899


Q ss_pred             EEEeCCCCceEEeecCCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCC
Q 024372          171 RLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMP  227 (268)
Q Consensus       171 ~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~  227 (268)
                      ++||+++++.+..+.....+.+++|+|||+++++ +.++.|++||.++.+.++.+..+
T Consensus       263 ~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~~  320 (337)
T d1pbyb_         263 ESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP  320 (337)
T ss_dssp             EEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred             EEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEECC
Confidence            9999999999999887777899999999998765 46889999999999999888764

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.86  E-value=2.3e-19  Score=149.93  Aligned_cols=244  Identities=13%  Similarity=0.010  Sum_probs=170.7

Q ss_pred             eeecCCCeeeEEEecCCCCCcEEEEE-----eCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEee------
Q 024372           12 CHGHSRPVVDLFYSPITPDGFFLVSA-----SKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS------   80 (268)
Q Consensus        12 ~~~h~~~v~~~~f~~~~~dg~~l~s~-----s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s------   80 (268)
                      ...|..++..++++|   ||+.++..     +.++.+.+||..+++.+.++..+..+  .++|+|||++++.++      
T Consensus        16 ~~~~~~p~~~~a~sp---dg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~   90 (373)
T d2madh_          16 AGAADGPTNDEAPGA---DGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRI   90 (373)
T ss_pred             cccCCCCccccccCC---CCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcc
Confidence            347899999999984   99988765     23456888999999999999877655  688999999987764      


Q ss_pred             ----CCCcEEEEeCCCCCeeeeeccCC-e-------EEEEEECCCCCEEEEee--CCCeEEEEECCCCCCCCeEecCCcc
Q 024372           81 ----ADFTAKLWDALTGDEKHSFEHKH-I-------VRACAFSEDTHLLLTGG--FEKILRIFDLNRPDAPPREVGNSSG  146 (268)
Q Consensus        81 ----~D~~v~iw~~~~~~~~~~~~~~~-~-------v~~v~~~~~~~~l~s~~--~d~~i~~~d~~~~~~~~~~~~~~~~  146 (268)
                          .++.|++||..+++....+.... .       ...+.|+++++.++...  .++.+.+|+....+.    . .+..
T Consensus        91 ~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~----~-~~~~  165 (373)
T d2madh_          91 AKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSD----D-QLLS  165 (373)
T ss_pred             cccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeE----E-EEec
Confidence                46789999999999877764322 1       23467888888766554  346777888654321    1 1222


Q ss_pred             cEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCC---------------------------------------
Q 024372          147 SIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK---------------------------------------  187 (268)
Q Consensus       147 ~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~---------------------------------------  187 (268)
                      ...++.+++++..++++...|+.+.+||...++........                                       
T Consensus       166 ~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  245 (373)
T d2madh_         166 SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAG  245 (373)
T ss_pred             cceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCe
Confidence            34567778888777777778889999988765543321100                                       


Q ss_pred             ---------------------CCEEEEEECCCCcEEE-----------EeCCCeEEEEeCCCceeeeEEeCCCCceeeEE
Q 024372          188 ---------------------SPVTSAEVSRDGRYIT-----------TADGSSVKFWDANHFGLVKGYNMPCNTESASL  235 (268)
Q Consensus       188 ---------------------~~v~~~~~s~~g~~l~-----------~~~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~  235 (268)
                                           .....++++|++..+.           ...++.+.+||+.+.+.+..+........+.+
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~  325 (373)
T d2madh_         246 ATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISV  325 (373)
T ss_pred             EEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCCCeeEEEE
Confidence                                 0011233445544332           12245788888888888877777666777888


Q ss_pred             cCCCCC--EEEeccCCCeEEEEECCCCcEEeec
Q 024372          236 EPKLGN--IFIAGGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       236 ~~~~~~--~~~~gs~d~~i~~wd~~~g~~~~~~  266 (268)
                      ++ +|+  ++++++.|+.|++||+.+|++++..
T Consensus       326 sp-DG~~~l~vt~~~d~~v~v~D~~tg~~~~~~  357 (373)
T d2madh_         326 AQ-DGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             CC-CCCEEEEEEeCCCCeEEEEECCCCCEEEEE
Confidence            87 576  4568899999999999999998765

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=1.2e-16  Score=130.68  Aligned_cols=247  Identities=16%  Similarity=0.152  Sum_probs=165.9

Q ss_pred             eeecCCCeeeEEEecCCCCCcEEEEEe-CCCCeEEeeCCCCCeEEEeeC---ccCcEEEEEecCCCcEEEEee-CCCcEE
Q 024372           12 CHGHSRPVVDLFYSPITPDGFFLVSAS-KDSSPMLRNGETGDWIGTFEG---HKGAVWSCCLDANALFSASGS-ADFTAK   86 (268)
Q Consensus        12 ~~~h~~~v~~~~f~~~~~dg~~l~s~s-~d~~i~iw~~~~~~~~~~~~~---h~~~V~~~~~~~~~~~l~s~s-~D~~v~   86 (268)
                      ...|.+.+..++|+|   ||++|++++ .|+.|++|++.......++..   +...+..++|+||++++++++ .++.++
T Consensus        32 ~~~~~~~v~~la~sp---DG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~  108 (333)
T d1ri6a_          32 VVDVPGQVQPMVVSP---DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVS  108 (333)
T ss_dssp             EEECSSCCCCEEECT---TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEE
T ss_pred             EEcCCCCEeEEEEeC---CCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCcee
Confidence            347889999999985   999995554 589999999876643333322   334567799999999988777 477899


Q ss_pred             EEeCCCCCeeeee---ccCCeEEEEEECCCCCEEEEee-CCCeEEEEECCCCCCCCeE-----ecCCcccEEEEEEeCCC
Q 024372           87 LWDALTGDEKHSF---EHKHIVRACAFSEDTHLLLTGG-FEKILRIFDLNRPDAPPRE-----VGNSSGSIRTVAWLHSD  157 (268)
Q Consensus        87 iw~~~~~~~~~~~---~~~~~v~~v~~~~~~~~l~s~~-~d~~i~~~d~~~~~~~~~~-----~~~~~~~v~~~~~~~~~  157 (268)
                      +|+..........   .+...+.++.++|+++.++.++ .+..|.+|+..........     ..........+++.+++
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~  188 (333)
T d1ri6a_         109 VTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNE  188 (333)
T ss_dssp             EEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTS
T ss_pred             eeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccc
Confidence            9988766543332   3555677889999999887766 5567899987643322111     11123345678888888


Q ss_pred             CcEEEEeeCCCeEEEEeCCCCc----eEEeec-------CCCCEEEEEECCCCcEEEEe--CCCeEEEEeCCCceeee--
Q 024372          158 QTILSSCTDSGGVRLWDARSGK----IVQTLE-------TKSPVTSAEVSRDGRYITTA--DGSSVKFWDANHFGLVK--  222 (268)
Q Consensus       158 ~~~~~~~~~d~~i~iwd~~~~~----~~~~~~-------~~~~v~~~~~s~~g~~l~~~--~~~~v~~wd~~~~~~~~--  222 (268)
                      ..++.+....+...+|+.....    ....+.       .......++++++++++...  .++.+.+|++.......  
T Consensus       189 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (333)
T d1ri6a_         189 QYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSK  268 (333)
T ss_dssp             SEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEE
T ss_pred             eeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEE
Confidence            7777777677788888875432    222221       12346778999999876543  46799999886543221  


Q ss_pred             --EEeCCCCceeeEEcCCCCCEEEe-ccCCCeEEEE--ECCCCcE
Q 024372          223 --GYNMPCNTESASLEPKLGNIFIA-GGEDMWVHVF--DFHTGEQ  262 (268)
Q Consensus       223 --~~~~~~~~~~~~~~~~~~~~~~~-gs~d~~i~~w--d~~~g~~  262 (268)
                        .......+..++++| +|++|++ ++.++.|++|  |.++|+.
T Consensus       269 ~~~~~~~~~p~~~a~sp-DGk~l~va~~~~~~v~v~~id~~tG~l  312 (333)
T d1ri6a_         269 EGFQPTETQPRGFNVDH-SGKYLIAAGQKSHHISVYEIVGEQGLL  312 (333)
T ss_dssp             EEEEECSSSCCCEEECT-TSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred             EEEeCCCCCeeEEEEeC-CCCEEEEEECCCCeEEEEEEECCCCcE
Confidence              122233456778887 6887655 5567889998  5567764

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.78  E-value=1.1e-17  Score=137.20  Aligned_cols=213  Identities=10%  Similarity=0.040  Sum_probs=142.6

Q ss_pred             ecCCCeeeEEEecCCCCCcEE-EEEeCCCCeEEeeCCCCCeEEEeeCcc------CcEEEEEecCCCcEEEEee------
Q 024372           14 GHSRPVVDLFYSPITPDGFFL-VSASKDSSPMLRNGETGDWIGTFEGHK------GAVWSCCLDANALFSASGS------   80 (268)
Q Consensus        14 ~h~~~v~~~~f~~~~~dg~~l-~s~s~d~~i~iw~~~~~~~~~~~~~h~------~~V~~~~~~~~~~~l~s~s------   80 (268)
                      .|...+.+++|+|   ||++| ++++.++.|.+||..+++.+.++....      ..+..++|+||+++++.++      
T Consensus        37 ~~~~~p~~l~~sp---DG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~  113 (346)
T d1jmxb_          37 PDKFGPGTAMMAP---DNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRL  113 (346)
T ss_dssp             SSCCSSCEEEECT---TSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEEC
T ss_pred             CCCCCcceEEECC---CCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcce
Confidence            4556678999985   99887 566688999999999999887775432      2356788999998876554      


Q ss_pred             ------CCCcEEEEeCCCCCeeeee---ccCCeEEEEEECCCCCEEEE--------------------------------
Q 024372           81 ------ADFTAKLWDALTGDEKHSF---EHKHIVRACAFSEDTHLLLT--------------------------------  119 (268)
Q Consensus        81 ------~D~~v~iw~~~~~~~~~~~---~~~~~v~~v~~~~~~~~l~s--------------------------------  119 (268)
                            .+..+.+|+..++.....+   ..+..+..+.++++++++++                                
T Consensus       114 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (346)
T d1jmxb_         114 NDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPD  193 (346)
T ss_dssp             SSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCB
T ss_pred             eeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeCCcceEEEccCCCEEEEEecCCCccceEEecc
Confidence                  4677888887654432211   11111222222222222221                                


Q ss_pred             --------------------------------eeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCC
Q 024372          120 --------------------------------GGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS  167 (268)
Q Consensus       120 --------------------------------~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d  167 (268)
                                                      +..+..+.+||+..+.........+...+..+.+++++..++... . 
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-  271 (346)
T d1jmxb_         194 VLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-L-  271 (346)
T ss_dssp             CCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-E-
T ss_pred             ccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEec-C-
Confidence                                            222233444554433322223333445667777888887765543 3 


Q ss_pred             CeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCCCce
Q 024372          168 GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNTE  231 (268)
Q Consensus       168 ~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~~~~  231 (268)
                      +.|++||+.+++.+..+.....+.+++|+|||+++.+ +.++.|++||+++.+.++.+..+....
T Consensus       272 ~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~g~~  336 (346)
T d1jmxb_         272 NRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDM  336 (346)
T ss_dssp             SEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECSSSCC
T ss_pred             CeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECCCCCc
Confidence            6899999999999998887677889999999988765 468999999999999999998876543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.77  E-value=7e-17  Score=133.45  Aligned_cols=242  Identities=15%  Similarity=0.075  Sum_probs=161.6

Q ss_pred             eeecCCCeeeEEEecCCCCCcEEEEE----------eCCCCeEEeeCCCCCeEEEeeCccCc-------EEEEEecCCCc
Q 024372           12 CHGHSRPVVDLFYSPITPDGFFLVSA----------SKDSSPMLRNGETGDWIGTFEGHKGA-------VWSCCLDANAL   74 (268)
Q Consensus        12 ~~~h~~~v~~~~f~~~~~dg~~l~s~----------s~d~~i~iw~~~~~~~~~~~~~h~~~-------V~~~~~~~~~~   74 (268)
                      +..+..+  .++|+|   ||++|+.+          ..|+.|++||..+++.+.++..+...       ...++|++++.
T Consensus        44 ~~~g~~~--~~a~Sp---Dg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~  118 (355)
T d2bbkh_          44 IDGGFLP--NPVVAD---DGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGK  118 (355)
T ss_dssp             EEECSSC--EEEECT---TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSS
T ss_pred             EECCCCC--ceEEcC---CCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCC
Confidence            3344444  688984   99988765          45889999999999998887644322       24568999998


Q ss_pred             EEEEe--eCCCcEEEEeCCCCCeeeeeccCCe--------EEEEEECCCCCEEEEe-eCCCeEEEEECCCCCCCCeEecC
Q 024372           75 FSASG--SADFTAKLWDALTGDEKHSFEHKHI--------VRACAFSEDTHLLLTG-GFEKILRIFDLNRPDAPPREVGN  143 (268)
Q Consensus        75 ~l~s~--s~D~~v~iw~~~~~~~~~~~~~~~~--------v~~v~~~~~~~~l~s~-~~d~~i~~~d~~~~~~~~~~~~~  143 (268)
                      +++.+  +.+..+.+|+..++.....+.....        ...+.++++++.++.. ..++.+.+++......      .
T Consensus       119 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~------~  192 (355)
T d2bbkh_         119 TLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP------E  192 (355)
T ss_dssp             EEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC------T
T ss_pred             eeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccc------e
Confidence            77554  4567899999999888776654332        2245567776665543 3344455555433221      1


Q ss_pred             CcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEE--eecCC-----------CCEEEEEECCCCcEEEEe--C--
Q 024372          144 SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQ--TLETK-----------SPVTSAEVSRDGRYITTA--D--  206 (268)
Q Consensus       144 ~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~--~~~~~-----------~~v~~~~~s~~g~~l~~~--~--  206 (268)
                      +...+....+.+++..++ .++.++.+++|++..++...  ....+           .....++++|++..+...  .  
T Consensus       193 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~  271 (355)
T d2bbkh_         193 DEFLINHPAYSQKAGRLV-WPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRD  271 (355)
T ss_dssp             TSCBCSCCEEETTTTEEE-EEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECC
T ss_pred             ecceeeeccccCCCCeEE-EecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCC
Confidence            122233345566665554 45677999999998876432  11111           123458899999876432  1  


Q ss_pred             -------CCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCC--EEEeccCCCeEEEEECCCCcEEeec
Q 024372          207 -------GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGN--IFIAGGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       207 -------~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~gs~d~~i~~wd~~~g~~~~~~  266 (268)
                             ...|.+||..+.+.+..+.....+..+.++| +|+  ++++++.|+.|++||.++|+++...
T Consensus       272 ~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~sp-DG~~~l~v~~~~d~~i~v~D~~tg~~~~~i  339 (355)
T d2bbkh_         272 EWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQ-DEKPLLYALSTGDKTLYIHDAESGEELRSV  339 (355)
T ss_dssp             TTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECC-SSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             ceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcC-CCCeEEEEEECCCCEEEEEECCCCCEEEEE
Confidence                   1369999999998888777655566778887 565  4567788999999999999988754

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=2.2e-15  Score=122.95  Aligned_cols=225  Identities=10%  Similarity=0.134  Sum_probs=150.6

Q ss_pred             EEEEEeCCCCeEEeeCCCCC---eEEEeeCccCcEEEEEecCCCcEE-EEeeCCCcEEEEeCCCCCeeee----eccCCe
Q 024372           33 FLVSASKDSSPMLRNGETGD---WIGTFEGHKGAVWSCCLDANALFS-ASGSADFTAKLWDALTGDEKHS----FEHKHI  104 (268)
Q Consensus        33 ~l~s~s~d~~i~iw~~~~~~---~~~~~~~h~~~V~~~~~~~~~~~l-~s~s~D~~v~iw~~~~~~~~~~----~~~~~~  104 (268)
                      .+++++.|++|++|++....   ++.++ .|.+.+..++|+|||++| +++..|+.|++|++........    ..+...
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~-~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~   84 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGS   84 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEE-cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCC
Confidence            45778899999999986543   23333 477899999999999988 4555689999999876653332    234455


Q ss_pred             EEEEEECCCCCEEEEeeC-CCeEEEEECCCCCCCC-eEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEE
Q 024372          105 VRACAFSEDTHLLLTGGF-EKILRIFDLNRPDAPP-REVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQ  182 (268)
Q Consensus       105 v~~v~~~~~~~~l~s~~~-d~~i~~~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~  182 (268)
                      +..++|+||++.|++++. ++.+.+|+........ .....+...+.++.+++++..++.++..+..|.+|+........
T Consensus        85 p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~  164 (333)
T d1ri6a_          85 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV  164 (333)
T ss_dssp             CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred             ceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcce
Confidence            677999999999988874 6788888865432211 12223445667788899888777777777889999987654322


Q ss_pred             e-------ecCCCCEEEEEECCCCcEEEEe--CCCeEEEEeCCCc----eeeeEEeC-C------CCceeeEEcCCCCC-
Q 024372          183 T-------LETKSPVTSAEVSRDGRYITTA--DGSSVKFWDANHF----GLVKGYNM-P------CNTESASLEPKLGN-  241 (268)
Q Consensus       183 ~-------~~~~~~v~~~~~s~~g~~l~~~--~~~~v~~wd~~~~----~~~~~~~~-~------~~~~~~~~~~~~~~-  241 (268)
                      .       .........+++++++.++...  ..+...+|+....    ........ +      .......+++ +++ 
T Consensus       165 ~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-d~~~  243 (333)
T d1ri6a_         165 AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP-DGRH  243 (333)
T ss_dssp             EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT-TSSE
T ss_pred             eeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEec-ccCc
Confidence            1       1223457889999999887543  4567778776432    11112211 1      1223345666 455 


Q ss_pred             EEEeccCCCeEEEEECCC
Q 024372          242 IFIAGGEDMWVHVFDFHT  259 (268)
Q Consensus       242 ~~~~gs~d~~i~~wd~~~  259 (268)
                      +++++..++.+.+|++..
T Consensus       244 ~~~~~~~~~~~~~~~~~~  261 (333)
T d1ri6a_         244 LYACDRTASLITVFSVSE  261 (333)
T ss_dssp             EEEEETTTTEEEEEEECT
T ss_pred             eeeecccCCeEEEEEEcC
Confidence            455567788899998754

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.69  E-value=5.2e-14  Score=116.84  Aligned_cols=216  Identities=14%  Similarity=0.003  Sum_probs=132.2

Q ss_pred             eecCCCeeeEEEecCCCCCcEEEEEe----------CCCCeEEeeCCCCCeEEEeeCccCcEE-------EEEecCCCcE
Q 024372           13 HGHSRPVVDLFYSPITPDGFFLVSAS----------KDSSPMLRNGETGDWIGTFEGHKGAVW-------SCCLDANALF   75 (268)
Q Consensus        13 ~~h~~~v~~~~f~~~~~dg~~l~s~s----------~d~~i~iw~~~~~~~~~~~~~h~~~V~-------~~~~~~~~~~   75 (268)
                      .++..+  .++|+|   ||++|+.++          .++.+.+||..+++.+..+..+.....       .+.|+++++.
T Consensus        64 ~~~~~~--~~a~Sp---DG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~  138 (373)
T d2madh_          64 NGGFLP--NPVAAH---SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNAD  138 (373)
T ss_pred             eCCCCc--cEEEcC---CCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCc
Confidence            344443  688984   999999885          457899999999999888876655442       3456666665


Q ss_pred             EEEe--eCCCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCE-EEEeeCCCeEEEEECCCCCCCCe-------------
Q 024372           76 SASG--SADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHL-LLTGGFEKILRIFDLNRPDAPPR-------------  139 (268)
Q Consensus        76 l~s~--s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~-l~s~~~d~~i~~~d~~~~~~~~~-------------  139 (268)
                      ++..  ..++.+.+|+....+.....   ....++.++|+++. +++.+.|+.+.+|+.........             
T Consensus       139 ~~v~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (373)
T d2madh_         139 LLFFQFAAGPAVGLVVQGGSSDDQLL---SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLL  215 (373)
T ss_pred             EEEEEEcCCCceEEeeccCCeEEEEe---ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccce
Confidence            4333  33456667766554433222   22334555665543 34555666666665432110000             


Q ss_pred             -----------------------------------EecCCc----------ccEEEEEEeCCCCc---------EEEEee
Q 024372          140 -----------------------------------EVGNSS----------GSIRTVAWLHSDQT---------ILSSCT  165 (268)
Q Consensus       140 -----------------------------------~~~~~~----------~~v~~~~~~~~~~~---------~~~~~~  165 (268)
                                                         ......          +....+++.+++..         .++...
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  295 (373)
T d2madh_         216 TQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHA  295 (373)
T ss_pred             eeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeec
Confidence                                               000000          00111222333222         223344


Q ss_pred             CCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcE--EEE-eCCCeEEEEeCCCceeeeEEeC-CCCceeeEEc
Q 024372          166 DSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRY--ITT-ADGSSVKFWDANHFGLVKGYNM-PCNTESASLE  236 (268)
Q Consensus       166 ~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~--l~~-~~~~~v~~wd~~~~~~~~~~~~-~~~~~~~~~~  236 (268)
                      .++.+.+||+.+++.+..+.....+..++|+|||+.  +++ +.++.|++||+.+++.++.+.. ...+..+++.
T Consensus       296 ~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~  370 (373)
T d2madh_         296 AAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVM  370 (373)
T ss_pred             CCCeEEEEECCCCcEEEEecCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEe
Confidence            557899999999999999988788999999999984  334 4678999999999999988864 3455555554

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.66  E-value=3.9e-15  Score=124.25  Aligned_cols=243  Identities=9%  Similarity=-0.062  Sum_probs=151.1

Q ss_pred             eecCCCeeeEEEecCCCCCcEEEEEe----------CCCCeEEeeCCCCCeEEEeeCccCc-------EEEEEecCCCcE
Q 024372           13 HGHSRPVVDLFYSPITPDGFFLVSAS----------KDSSPMLRNGETGDWIGTFEGHKGA-------VWSCCLDANALF   75 (268)
Q Consensus        13 ~~h~~~v~~~~f~~~~~dg~~l~s~s----------~d~~i~iw~~~~~~~~~~~~~h~~~-------V~~~~~~~~~~~   75 (268)
                      .+|..+  .++|+   |||++|+.++          .|++|++||..+++.+..+..|...       ...++|+||+++
T Consensus        63 ~~~~~~--~~a~s---pDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~  137 (368)
T d1mdah_          63 LGAFLS--LAVAG---HSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSAC  137 (368)
T ss_dssp             EECTTC--EEEEC---TTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSC
T ss_pred             eCCCCC--cceEC---CCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCE
Confidence            344444  57787   5999998764          4788999999999999888654332       235789999998


Q ss_pred             EEEee-CCCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeE-----ecCCcccEE
Q 024372           76 SASGS-ADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE-----VGNSSGSIR  149 (268)
Q Consensus        76 l~s~s-~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~-----~~~~~~~v~  149 (268)
                      ++.++ .++.+.+||+.+++....+..+.....  +......+++.+.|+.+..+++.........     ...+...+.
T Consensus       138 l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (368)
T d1mdah_         138 LLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI--HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQ  215 (368)
T ss_dssp             EEEEECSSSCEEEEEETTTEEEEEEECSSCCCC--EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSC
T ss_pred             EEEEeCCCCeEEEEECCCCcEeEEeeccCcceE--ccCCCceEEEEcCCCCEEEEEecCCceeeeeeeccccccccccee
Confidence            87665 679999999999888776653322110  0112234445555666666655432221111     111222233


Q ss_pred             EEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeec--CC-----------CCEEEEEECCCCcEEEE--eCC-------
Q 024372          150 TVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE--TK-----------SPVTSAEVSRDGRYITT--ADG-------  207 (268)
Q Consensus       150 ~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~--~~-----------~~v~~~~~s~~g~~l~~--~~~-------  207 (268)
                      ...+.+++ ..+.+  ..+.+.++++..++......  ..           .....++++|++..+..  ..+       
T Consensus       216 ~~~~~~~g-~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~  292 (368)
T d1mdah_         216 AAQANYPG-MLVWA--VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAA  292 (368)
T ss_dssp             CEEETTTT-EEEEC--BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSC
T ss_pred             ecccccCc-EEEEe--cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecC
Confidence            34444443 23322  23567777766554432211  10           12345788999876532  111       


Q ss_pred             -CeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCC--EEEeccCCCeEEEEECCCCcEEeec
Q 024372          208 -SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGN--IFIAGGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       208 -~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~gs~d~~i~~wd~~~g~~~~~~  266 (268)
                       ..|.+||..+++.+..+.....+..+.+++ +|+  ++++++.|+.|++||..+|+.+...
T Consensus       293 ~~~v~v~D~~t~~~~~~~~~~~~~~~~a~sp-DG~~~ly~s~~~~~~v~v~D~~tgk~~~~i  353 (368)
T d1mdah_         293 AENTSSVTASVGQTSGPISNGHDSDAIIAAQ-DGASDNYANSAGTEVLDIYDAASDQDQSSV  353 (368)
T ss_dssp             EEEEEEEESSSCCEEECCEEEEEECEEEECC-SSSCEEEEEETTTTEEEEEESSSCEEEEEC
T ss_pred             CceEEEEECCCCcEeEEecCCCceeEEEECC-CCCEEEEEEeCCCCeEEEEECCCCCEEEEE
Confidence             358899999988887776555566778887 464  4567788999999999999988754

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.47  E-value=1.1e-11  Score=101.66  Aligned_cols=200  Identities=16%  Similarity=0.104  Sum_probs=129.2

Q ss_pred             eeEEEecCCCCCcEEEEEe--CCCCeEEeeCCCCCeEEEeeCccCcE-------EEEEecCCCcEEEE-eeCCCcEEEEe
Q 024372           20 VDLFYSPITPDGFFLVSAS--KDSSPMLRNGETGDWIGTFEGHKGAV-------WSCCLDANALFSAS-GSADFTAKLWD   89 (268)
Q Consensus        20 ~~~~f~~~~~dg~~l~s~s--~d~~i~iw~~~~~~~~~~~~~h~~~V-------~~~~~~~~~~~l~s-~s~D~~v~iw~   89 (268)
                      ..++|+   ++|++++.++  .+..+.+|+..+++.+.++..+....       ..+.+++++..++. ...++.+.+++
T Consensus       109 ~~~~~s---~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~  185 (355)
T d2bbkh_         109 WMTSLT---PDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH  185 (355)
T ss_dssp             GGEEEC---TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEE
T ss_pred             ceEEEe---cCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEe
Confidence            467787   4888888775  45577889999999888887554322       22334444433322 22233333333


Q ss_pred             CCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCC-eEecCC----------cccEEEEEEeCCCC
Q 024372           90 ALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP-REVGNS----------SGSIRTVAWLHSDQ  158 (268)
Q Consensus        90 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~-~~~~~~----------~~~v~~~~~~~~~~  158 (268)
                      ..+...    .+...+....+.+++..++.++.++.+.+|++..+.... .....+          ......+++++++.
T Consensus       186 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~  261 (355)
T d2bbkh_         186 TEVFHP----EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALD  261 (355)
T ss_dssp             CCCCSC----TTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTT
T ss_pred             cccccc----eecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCC
Confidence            322211    122334556677778888888999999999987653211 011111          01123467777777


Q ss_pred             cEEEEeeCC---------CeEEEEeCCCCceEEeecCCCCEEEEEECCCCc--EEEEe-CCCeEEEEeCCCceeeeEEeC
Q 024372          159 TILSSCTDS---------GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGR--YITTA-DGSSVKFWDANHFGLVKGYNM  226 (268)
Q Consensus       159 ~~~~~~~~d---------~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~--~l~~~-~~~~v~~wd~~~~~~~~~~~~  226 (268)
                      .++++....         +.|.+||+.+++.+..+.....+.+++|+|||+  +++++ .++.|++||+++++.++++..
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~  341 (355)
T d2bbkh_         262 RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ  341 (355)
T ss_dssp             EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred             eEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeC
Confidence            666554332         479999999999998887666688999999997  34444 578999999999999888864

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.42  E-value=2.5e-11  Score=103.96  Aligned_cols=105  Identities=13%  Similarity=-0.066  Sum_probs=82.5

Q ss_pred             ecCCCeeeEEEecCCCCCcEEEEEeC---------CCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCc
Q 024372           14 GHSRPVVDLFYSPITPDGFFLVSASK---------DSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFT   84 (268)
Q Consensus        14 ~h~~~v~~~~f~~~~~dg~~l~s~s~---------d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~   84 (268)
                      .|...|.+..|+|   ||++|+.++.         ++.+.+||+.+++. ..+..|.+.+..++|+|||+++|.. .++.
T Consensus        59 ~~~~~i~~~~~Sp---Dg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~  133 (470)
T d2bgra1          59 EFGHSINDYSISP---DGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYV-WNND  133 (470)
T ss_dssp             TSSSCCCEEEECT---TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEE-ETTE
T ss_pred             hccCccceeEECC---CCCEEEEEECCcceeeeccCceEEEEECCCCcc-cccccCCccccccccccCcceeeEe-eccc
Confidence            4567899999985   9999998864         45678999998874 4688899999999999999999885 5779


Q ss_pred             EEEEeCCCCCeeeeec-------------------cCCeEEEEEECCCCCEEEEeeCC
Q 024372           85 AKLWDALTGDEKHSFE-------------------HKHIVRACAFSEDTHLLLTGGFE  123 (268)
Q Consensus        85 v~iw~~~~~~~~~~~~-------------------~~~~v~~v~~~~~~~~l~s~~~d  123 (268)
                      +++|+..++...+...                   .......+.|+|||+.|+....|
T Consensus       134 l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d  191 (470)
T d2bgra1         134 IYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFN  191 (470)
T ss_dssp             EEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEE
T ss_pred             ceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEec
Confidence            9999998877654321                   11224567899999999987654

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.37  E-value=3.4e-13  Score=113.99  Aligned_cols=224  Identities=9%  Similarity=-0.002  Sum_probs=149.4

Q ss_pred             EEEEeCCCCeEEeeCCCCCeEEEeeC------------------------------ccCcEEEEEecCCCcEE-EEeeCC
Q 024372           34 LVSASKDSSPMLRNGETGDWIGTFEG------------------------------HKGAVWSCCLDANALFS-ASGSAD   82 (268)
Q Consensus        34 l~s~s~d~~i~iw~~~~~~~~~~~~~------------------------------h~~~V~~~~~~~~~~~l-~s~s~D   82 (268)
                      ++|++.+|++++|++.+++.+.++.-                              |........++|||+++ ++...+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            66778899999999988887766521                              22333334457899887 566688


Q ss_pred             CcEEEEeCCCCCeeeee--ccCCeEEEEEECCCCCE--EEEeeCCC-----------------eEEEEECCCCCCCCeEe
Q 024372           83 FTAKLWDALTGDEKHSF--EHKHIVRACAFSEDTHL--LLTGGFEK-----------------ILRIFDLNRPDAPPREV  141 (268)
Q Consensus        83 ~~v~iw~~~~~~~~~~~--~~~~~v~~v~~~~~~~~--l~s~~~d~-----------------~i~~~d~~~~~~~~~~~  141 (268)
                      .+|.++|+.+.++...+  ++......+.|+|+++.  ++..+.+.                 .+..+|..+.+...+..
T Consensus        94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~  173 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI  173 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE
T ss_pred             CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEe
Confidence            99999999999887654  45677899999999984  43333322                 12345655433222221


Q ss_pred             cCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEeCCCeEEEEeCCCceee
Q 024372          142 GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLV  221 (268)
Q Consensus       142 ~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~  221 (268)
                      .  .+....+.++|+++++++++.....+..+|..+.+.+..+........++++|+|+++..++++.+.+++....+.+
T Consensus       174 v--~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~  251 (441)
T d1qnia2         174 V--DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFT  251 (441)
T ss_dssp             E--SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSE
T ss_pred             c--CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceE
Confidence            1  23456678899998888877654555555555544433222111122345678999987777778888887777777


Q ss_pred             eEEeCCCCceeeEEcCCCCCEE-EeccCCCeEEEEECCCC
Q 024372          222 KGYNMPCNTESASLEPKLGNIF-IAGGEDMWVHVFDFHTG  260 (268)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~-~~gs~d~~i~~wd~~~g  260 (268)
                      .....+..+..+.++| +|+++ +++..+..|.+||+.+.
T Consensus       252 ~~IPvgksPhGv~vSP-DGkyl~~~~~~~~tvsv~d~~k~  290 (441)
T d1qnia2         252 RYIPVPKNPHGLNTSP-DGKYFIANGKLSPTVSVIAIDKL  290 (441)
T ss_dssp             EEECCBSSCCCEEECT-TSCEEEEECTTSSBEEEEEGGGH
T ss_pred             EEEeCCCCccCceECC-CCCEEEEeCCcCCcEEEEEeehh
Confidence            7777666667778888 57765 56788999999998653

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.37  E-value=1.4e-11  Score=102.17  Aligned_cols=208  Identities=12%  Similarity=-0.003  Sum_probs=135.0

Q ss_pred             eEEEecCCCCCcEEEEEe-CCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeee
Q 024372           21 DLFYSPITPDGFFLVSAS-KDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF   99 (268)
Q Consensus        21 ~~~f~~~~~dg~~l~s~s-~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~   99 (268)
                      .++|+   |||++|+.+. .++++.+||+.+++.+..+..+.....   +......++..+.|+.+.+|+..........
T Consensus       128 ~~a~S---pDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~  201 (368)
T d1mdah_         128 IIGNC---ASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI---HPGAAATHYLGSCPASLAASDLAAAPAAAGI  201 (368)
T ss_dssp             SEEEC---TTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC---EEEETTEEECCCCTTSCEEEECCSSCCCCEE
T ss_pred             ceEEC---CCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE---ccCCCceEEEEcCCCCEEEEEecCCceeeee
Confidence            57887   4999998876 578999999999999988876654321   1122345566778888888887654432221


Q ss_pred             -------ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEe-cC----------CcccEEEEEEeCCCCcEE
Q 024372          100 -------EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV-GN----------SSGSIRTVAWLHSDQTIL  161 (268)
Q Consensus       100 -------~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~-~~----------~~~~v~~~~~~~~~~~~~  161 (268)
                             .+...+..+.+.+++..+.+.  .+.+.++++.......... ..          ..+....+++++++..++
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~  279 (368)
T d1mdah_         202 VGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIM  279 (368)
T ss_dssp             CCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEE
T ss_pred             eecccccccccceeecccccCcEEEEec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEE
Confidence                   122234456677777666544  3445556654322110000 00          001122356677777665


Q ss_pred             EEeeCC--------CeEEEEeCCCCceEEeecCCCCEEEEEECCCCc-EE-EE-eCCCeEEEEeCCCceeeeEEeCCCCc
Q 024372          162 SSCTDS--------GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGR-YI-TT-ADGSSVKFWDANHFGLVKGYNMPCNT  230 (268)
Q Consensus       162 ~~~~~d--------~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~-~l-~~-~~~~~v~~wd~~~~~~~~~~~~~~~~  230 (268)
                      +....+        +.|.+||..+++.+.++.....+..++|+|||+ ++ ++ ..++.|++||..+++.++.+.....+
T Consensus       280 v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~P  359 (368)
T d1mdah_         280 ILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGP  359 (368)
T ss_dssp             EEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCC
T ss_pred             EEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCCCC
Confidence            543322        369999999999999887666788999999996 33 34 35789999999999999888876666


Q ss_pred             eeeEEc
Q 024372          231 ESASLE  236 (268)
Q Consensus       231 ~~~~~~  236 (268)
                      ..+.+.
T Consensus       360 ~~l~~~  365 (368)
T d1mdah_         360 ESLSVQ  365 (368)
T ss_dssp             CEEECC
T ss_pred             CEEEEe
Confidence            666554

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.25  E-value=5.7e-10  Score=93.98  Aligned_cols=222  Identities=10%  Similarity=-0.029  Sum_probs=143.3

Q ss_pred             CCCCCcEEEEE-eCCCCeEEeeCCCCCeEEEee-CccCcEEEEEecCCCc--EEEEeeCCC-----------------cE
Q 024372           27 ITPDGFFLVSA-SKDSSPMLRNGETGDWIGTFE-GHKGAVWSCCLDANAL--FSASGSADF-----------------TA   85 (268)
Q Consensus        27 ~~~dg~~l~s~-s~d~~i~iw~~~~~~~~~~~~-~h~~~V~~~~~~~~~~--~l~s~s~D~-----------------~v   85 (268)
                      .+|||++|+.. ..+..|.++|..+++..+.+. .+......++|+|+++  +++..+.+.                 .+
T Consensus        79 gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~  158 (441)
T d1qnia2          79 GRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMF  158 (441)
T ss_dssp             TEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEE
T ss_pred             ccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceE
Confidence            34699999555 577788999999999887775 3567889999999987  444444332                 23


Q ss_pred             EEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCC-----------------------------------------
Q 024372           86 KLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEK-----------------------------------------  124 (268)
Q Consensus        86 ~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~-----------------------------------------  124 (268)
                      ..+|..+......+........+.++|+++++++.+.+.                                         
T Consensus       159 ~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~  238 (441)
T d1qnia2         159 TAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSK  238 (441)
T ss_dssp             EEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCC
T ss_pred             EeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCC
Confidence            457888877777776666677899999999998877553                                         


Q ss_pred             eEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCce-----------EE-eecCCCCEEE
Q 024372          125 ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI-----------VQ-TLETKSPVTS  192 (268)
Q Consensus       125 ~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~-----------~~-~~~~~~~v~~  192 (268)
                      .+.+++... ......+...+ ....+..+|++.++++++..+++|.+||+++.+.           +. ..+..-....
T Consensus       239 v~vvd~~~~-~~v~~~IPvgk-sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh  316 (441)
T d1qnia2         239 VPVVDGRGE-SEFTRYIPVPK-NPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLH  316 (441)
T ss_dssp             CCEEECSSS-CSSEEEECCBS-SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEE
T ss_pred             cEEEEcccC-CceEEEEeCCC-CccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCccc
Confidence            222222111 11122222222 2345788999999999999999999999876331           11 1111123466


Q ss_pred             EEECCCCcEEEEe-CCCeEEEEeCCC----------ceeeeEEeCCC--C----ceeeEEcCCCCCEEEec---cCCCe
Q 024372          193 AEVSRDGRYITTA-DGSSVKFWDANH----------FGLVKGYNMPC--N----TESASLEPKLGNIFIAG---GEDMW  251 (268)
Q Consensus       193 ~~~s~~g~~l~~~-~~~~v~~wd~~~----------~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~g---s~d~~  251 (268)
                      .+|.++|...++. -|..|..|++..          ...+.....+.  +    .....+.| +|++|+++   |.|+.
T Consensus       317 ~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~p-dGk~l~s~~k~s~dr~  394 (441)
T d1qnia2         317 TTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDA-DGKWLVVLSKFSKDRF  394 (441)
T ss_dssp             EEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTC-CCCEEEEEESCCGGGS
T ss_pred             ceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCC-CCcEEEecCccccccC
Confidence            7899999776654 578999999741          11233332221  1    12233445 79999999   77754

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.17  E-value=1.9e-10  Score=98.30  Aligned_cols=147  Identities=10%  Similarity=0.027  Sum_probs=105.8

Q ss_pred             eEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEee-----CccCcEEEEEecCCCcEEEEeeC---------CCcEE
Q 024372           21 DLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE-----GHKGAVWSCCLDANALFSASGSA---------DFTAK   86 (268)
Q Consensus        21 ~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~-----~h~~~V~~~~~~~~~~~l~s~s~---------D~~v~   86 (268)
                      .+.|.   +|++++.  ..|+.+.+||..+++....+.     .|...|.+++|+||+++|+.++.         ++.+.
T Consensus        21 ~~~W~---~d~~~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~   95 (470)
T d2bgra1          21 SLRWI---SDHEYLY--KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD   95 (470)
T ss_dssp             CCEEC---SSSEEEE--ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             CCEeC---CCCEEEE--EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEE
Confidence            46676   4888775  568899999999998765554     45578999999999999887743         56788


Q ss_pred             EEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecC-----------------CcccEE
Q 024372           87 LWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN-----------------SSGSIR  149 (268)
Q Consensus        87 iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~-----------------~~~~v~  149 (268)
                      +||+.+++......++..+..+.|+|||+.+|.. .++.+.+|+...+.........                 ..+...
T Consensus        96 l~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~  174 (470)
T d2bgra1          96 IYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYS  174 (470)
T ss_dssp             EEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSB
T ss_pred             EEECCCCcccccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCcc
Confidence            9999998876655678889999999999999986 4678999987655321111111                 112234


Q ss_pred             EEEEeCCCCcEEEEeeCCCeEEEE
Q 024372          150 TVAWLHSDQTILSSCTDSGGVRLW  173 (268)
Q Consensus       150 ~~~~~~~~~~~~~~~~~d~~i~iw  173 (268)
                      .+.|+|++..++....++..++.|
T Consensus       175 ~~~wSPDGk~ia~~~~d~~~v~~~  198 (470)
T d2bgra1         175 ALWWSPNGTFLAYAQFNDTEVPLI  198 (470)
T ss_dssp             CEEECTTSSEEEEEEEECTTCCEE
T ss_pred             ccEECCCCCccceeEecCCcCceE
Confidence            577999998776665544433333

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.13  E-value=2.4e-07  Score=72.32  Aligned_cols=222  Identities=12%  Similarity=0.128  Sum_probs=130.8

Q ss_pred             cEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCC---eEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeC-CCc
Q 024372            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSS---PMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSA-DFT   84 (268)
Q Consensus         9 ~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~---i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~-D~~   84 (268)
                      +..+..+.+.+..-+|+|   ||++||-.+....   +.+.+...+.. ..+..+.+......|+|++..++..+. ++.
T Consensus        31 ~~~l~~~~~~~~sP~wSP---DGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~  106 (269)
T d2hqsa1          31 QFVVHRSPQPLMSPAWSP---DGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGS  106 (269)
T ss_dssp             CEEEEEESSCEEEEEECT---TSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEEEEEECTTSS
T ss_pred             cEEEecCCCceeeeEECC---CCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCeeeEeeecCCc
Confidence            444455677888899985   9999987655443   33445555543 345557788888999999998776543 333


Q ss_pred             EEE--EeCCCCCeeeeeccCCeEEEEEECCCCCEEEE-eeCCCe--EEEEECCCCCCCCeEecCCcccEEEEEEeCCCCc
Q 024372           85 AKL--WDALTGDEKHSFEHKHIVRACAFSEDTHLLLT-GGFEKI--LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQT  159 (268)
Q Consensus        85 v~i--w~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s-~~~d~~--i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  159 (268)
                      ..+  +.....................++++++.++. ...++.  |.+.++...  ................|+|++..
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~spdg~~  184 (269)
T d2hqsa1         107 LNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG--APQRITWEGSQNQDADVSSDGKF  184 (269)
T ss_dssp             CEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS--CCEECCCSSSEEEEEEECTTSSE
T ss_pred             cceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccc--cceeeecccccccccccccccce
Confidence            333  33333333333334444445556776664444 444554  444454432  23333344556667789999988


Q ss_pred             EEEEeeCCCeEEEE--eCCCCceEEeecCCCCEEEEEECCCCcEEEE-eC---CCeEEEEeCCCceeeeEEeCCCCceee
Q 024372          160 ILSSCTDSGGVRLW--DARSGKIVQTLETKSPVTSAEVSRDGRYITT-AD---GSSVKFWDANHFGLVKGYNMPCNTESA  233 (268)
Q Consensus       160 ~~~~~~~d~~i~iw--d~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~---~~~v~~wd~~~~~~~~~~~~~~~~~~~  233 (268)
                      ++......+...+|  |...+.. +.+..........|+|||+.|+- +.   ...+.++++......+...........
T Consensus       185 ~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~~~g~~~~p  263 (269)
T d2hqsa1         185 MVMVSSNGGQQHIAKQDLATGGV-QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFP  263 (269)
T ss_dssp             EEEEEECSSCEEEEEEETTTCCE-EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEE
T ss_pred             eEEEeecCCceeeeEeecccccc-eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEeCCCCcEEeE
Confidence            88777665655554  5555543 44444445667899999998753 32   346888998765443322222222334


Q ss_pred             EEcC
Q 024372          234 SLEP  237 (268)
Q Consensus       234 ~~~~  237 (268)
                      +|+|
T Consensus       264 ~WSP  267 (269)
T d2hqsa1         264 AWSP  267 (269)
T ss_dssp             EECC
T ss_pred             EeCC
Confidence            5555

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.12  E-value=4e-08  Score=81.18  Aligned_cols=240  Identities=8%  Similarity=0.055  Sum_probs=139.0

Q ss_pred             cCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC-CCeEEEee-CccCcEEEEEecCCCcE--EEEee-CCCcEEEEe
Q 024372           15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-GDWIGTFE-GHKGAVWSCCLDANALF--SASGS-ADFTAKLWD   89 (268)
Q Consensus        15 h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~-~~~~~~~~-~h~~~V~~~~~~~~~~~--l~s~s-~D~~v~iw~   89 (268)
                      +..++.-++|+|   +|++|.++..+ .+..|.+.. ++...... ........++++++++.  +++.. ..+++..+.
T Consensus        38 ~~~~~s~la~s~---d~~~ly~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~  113 (365)
T d1jofa_          38 QDEPISWMTFDH---ERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANP  113 (365)
T ss_dssp             TTCCCSEEEECT---TSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEE
T ss_pred             CCCCCCEEEEcC---CCCEEEEEeCC-cEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeE
Confidence            455566788884   89999887654 455554432 33322211 11122345567888873  44433 245555554


Q ss_pred             CCCCC-ee---------------eee--ccCCeEEEEEECCCCCEEEEee-CCCeEEEEECCCCCCCCe--E--ecCCcc
Q 024372           90 ALTGD-EK---------------HSF--EHKHIVRACAFSEDTHLLLTGG-FEKILRIFDLNRPDAPPR--E--VGNSSG  146 (268)
Q Consensus        90 ~~~~~-~~---------------~~~--~~~~~v~~v~~~~~~~~l~s~~-~d~~i~~~d~~~~~~~~~--~--~~~~~~  146 (268)
                      +.... ..               ...  .....+.++.|+|++++++++. ....|.+|+.........  .  ......
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~  193 (365)
T d1jofa_         114 FYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGD  193 (365)
T ss_dssp             ESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTC
T ss_pred             ccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCC
Confidence            32211 00               000  1122367899999999888765 345788887543322111  1  112234


Q ss_pred             cEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCce--EE---eecC---------------CCCEEEEEECCCCcEEEEeC
Q 024372          147 SIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI--VQ---TLET---------------KSPVTSAEVSRDGRYITTAD  206 (268)
Q Consensus       147 ~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~--~~---~~~~---------------~~~v~~~~~s~~g~~l~~~~  206 (268)
                      ....+.|+|++..+.++...+++|.+||...+..  +.   ....               ......+.++|||+++..+.
T Consensus       194 gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsn  273 (365)
T d1jofa_         194 HPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS  273 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred             ceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEc
Confidence            5678999999988888888889999999876542  21   1111               01245789999999986542


Q ss_pred             ---C----CeEEEEeCCCceeeeE----EeC---CCCceeeEEcCCCCCEEEec-cCCCeEEEEECC
Q 024372          207 ---G----SSVKFWDANHFGLVKG----YNM---PCNTESASLEPKLGNIFIAG-GEDMWVHVFDFH  258 (268)
Q Consensus       207 ---~----~~v~~wd~~~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~~g-s~d~~i~~wd~~  258 (268)
                         +    ..|..|++.....+..    ...   ...+..+.+.|.+|++++++ ..++.|.+|++.
T Consensus       274 r~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~  340 (365)
T d1jofa_         274 RANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWK  340 (365)
T ss_dssp             EESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred             ccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEe
Confidence               1    2377777755322221    111   12345677777678866654 667899999864

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=4.1e-07  Score=70.95  Aligned_cols=219  Identities=15%  Similarity=0.119  Sum_probs=130.0

Q ss_pred             eEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCC-C--cEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEE
Q 024372           43 PMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD-F--TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLT  119 (268)
Q Consensus        43 i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D-~--~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s  119 (268)
                      |.|.|.. |.....+..+.+.+..-+|+|||+.||-.+.. +  .+.+.+...+.......+........|+|+++.++.
T Consensus        21 l~i~d~d-G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~   99 (269)
T d2hqsa1          21 LRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAF   99 (269)
T ss_dssp             EEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             EEEEcCC-CCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeeeE
Confidence            4444543 43333444456778899999999998855433 2  455667777776666667777888999999998886


Q ss_pred             eeC-CCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCC--eEEEEeCCCCceEEeecCCCCEEEEEEC
Q 024372          120 GGF-EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG--GVRLWDARSGKIVQTLETKSPVTSAEVS  196 (268)
Q Consensus       120 ~~~-d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~s  196 (268)
                      ... ++...++.......................+++.+..++.+...++  .|.+.++..+................++
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s  179 (269)
T d2hqsa1         100 ALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVS  179 (269)
T ss_dssp             EECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEEC
T ss_pred             eeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccceeeecccccccccccc
Confidence            543 2222222222111112222222333344456677776666655555  4666677766555544444556778999


Q ss_pred             CCCcEEEEe--CCCe--EEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEecc---CCCeEEEEECCCCcEEe
Q 024372          197 RDGRYITTA--DGSS--VKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGG---EDMWVHVFDFHTGEQIA  264 (268)
Q Consensus       197 ~~g~~l~~~--~~~~--v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs---~d~~i~~wd~~~g~~~~  264 (268)
                      |+++.++..  .++.  +.+.|...... +............++| +|+.|+-.+   ....|++|++..++...
T Consensus       180 pdg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~p~~SP-DG~~i~f~s~~~~~~~l~~~~~dg~~~~~  252 (269)
T d2hqsa1         180 SDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTFLDETPSLAP-NGTMVIYSSSQGMGSVLNLVSTDGRFKAR  252 (269)
T ss_dssp             TTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSSSCEEEEECT-TSSEEEEEEEETTEEEEEEEETTSCCEEE
T ss_pred             cccceeEEEeecCCceeeeEeecccccc-eEeecCccccceEECC-CCCEEEEEEcCCCCcEEEEEECCCCCEEE
Confidence            999987643  3333  44555554432 2233333344567777 688776333   34579999998766544

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.09  E-value=3.4e-07  Score=72.42  Aligned_cols=233  Identities=10%  Similarity=0.124  Sum_probs=152.5

Q ss_pred             CeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCc------cCcEEEEEecCC-CcEEE-EeeCCCcEEEEe
Q 024372           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH------KGAVWSCCLDAN-ALFSA-SGSADFTAKLWD   89 (268)
Q Consensus        18 ~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h------~~~V~~~~~~~~-~~~l~-s~s~D~~v~iw~   89 (268)
                      .-..+++.|   +|+.+++-.....|++||.+ |+++..+...      ...-..+++.++ +.+++ ..+.++.|.+++
T Consensus        24 ~P~gvavd~---dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~   99 (279)
T d1q7fa_          24 EPSGVAVNA---QNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN   99 (279)
T ss_dssp             CEEEEEECT---TCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred             CccEEEEcC---CCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccc
Confidence            356888874   88888887888889999854 8887777321      112234454443 44443 344566777777


Q ss_pred             CCCCCeeeeec--cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEe--cCCcccEEEEEEeCCCCcEEEEee
Q 024372           90 ALTGDEKHSFE--HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV--GNSSGSIRTVAWLHSDQTILSSCT  165 (268)
Q Consensus        90 ~~~~~~~~~~~--~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~  165 (268)
                      . .+.....+.  .......+++.+++.++++....+.+.+++.+. .. ...+  ..+......+++.+++ .++++..
T Consensus       100 ~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g-~~-~~~~g~~~~~~~~~~i~~d~~g-~i~v~d~  175 (279)
T d1q7fa_         100 Q-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NV-LHKFGCSKHLEFPNGVVVNDKQ-EIFISDN  175 (279)
T ss_dssp             T-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CE-EEEEECTTTCSSEEEEEECSSS-EEEEEEG
T ss_pred             c-cccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCC-ce-eecccccccccccceeeeccce-eEEeeec
Confidence            5 455555553  234567888999999888888888888888642 21 2222  1233455667776654 5666666


Q ss_pred             CCCeEEEEeCCCCceEEeecCC---CCEEEEEECCCCcEEEEe--CCCeEEEEeCCCceeeeEEeCCC---CceeeEEcC
Q 024372          166 DSGGVRLWDARSGKIVQTLETK---SPVTSAEVSRDGRYITTA--DGSSVKFWDANHFGLVKGYNMPC---NTESASLEP  237 (268)
Q Consensus       166 ~d~~i~iwd~~~~~~~~~~~~~---~~v~~~~~s~~g~~l~~~--~~~~v~~wd~~~~~~~~~~~~~~---~~~~~~~~~  237 (268)
                      ..+.|++||.. ++.+.++...   .....+++.|+|+++++.  .+..|.+|+. .++.+.++....   .+..+++.+
T Consensus       176 ~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~  253 (279)
T d1q7fa_         176 RAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMD  253 (279)
T ss_dssp             GGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEET
T ss_pred             cccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeC
Confidence            67899999975 6777776432   347899999999987764  3457999985 455566664322   345666666


Q ss_pred             CCCCEEEeccCCCeEEEEECCCCcE
Q 024372          238 KLGNIFIAGGEDMWVHVFDFHTGEQ  262 (268)
Q Consensus       238 ~~~~~~~~gs~d~~i~~wd~~~g~~  262 (268)
                       +|.++++ ..+..|++|+..+..+
T Consensus       254 -dG~l~V~-~~n~~v~~fr~~~~~~  276 (279)
T d1q7fa_         254 -DGSVVLA-SKDYRLYIYRYVQLAP  276 (279)
T ss_dssp             -TTEEEEE-ETTTEEEEEECSCCCC
T ss_pred             -CCcEEEE-eCCCeEEEEEeeeecC
Confidence             5776554 5688899999876554

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.05  E-value=1.9e-07  Score=73.14  Aligned_cols=231  Identities=10%  Similarity=0.005  Sum_probs=141.8

Q ss_pred             eeeEEEecCCCCCcEEEEE-eCCCCeEEeeCCCCC-eEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCee
Q 024372           19 VVDLFYSPITPDGFFLVSA-SKDSSPMLRNGETGD-WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEK   96 (268)
Q Consensus        19 v~~~~f~~~~~dg~~l~s~-s~d~~i~iw~~~~~~-~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~   96 (268)
                      -.++++.+   +|+..++. +..+.+..++..... ....+.+. .....+++++++.++++....+.+++++-......
T Consensus        16 P~~vavd~---dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~   91 (260)
T d1rwia_          16 PSGVAVDS---AGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGL-YQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTV   91 (260)
T ss_dssp             EEEEEECT---TCCEEEEECSSSCEEEEEC----CEEECCCCSC-CSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEE
T ss_pred             CCEEEEcC---CCCEEEEEcCCCCEEEEEcCCCceEEEeccCCc-cCceEEEEcCCCCEEEeeeeeceeeeeeeccceee
Confidence            46888874   78865554 444556555544332 22222322 23456789999998888888888888776555544


Q ss_pred             eeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCC
Q 024372           97 HSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR  176 (268)
Q Consensus        97 ~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~  176 (268)
                      ...........+++.+++++.++-..+..+..++............. ......+++.+++. ++++....+.|..+|..
T Consensus        92 ~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~i~~~~~g~-~~v~~~~~~~i~~~d~~  169 (260)
T d1rwia_          92 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTG-LNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAE  169 (260)
T ss_dssp             CCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCS-CCSCCEEEECTTCC-EEEEEGGGTEEEEECTT
T ss_pred             eeeeeeeecccccccccceeEeeccccccccccccccceeeeeeecc-cCCcceeeecCCCC-Eeeeccccccccccccc
Confidence            44443455788999999998887666777777775432211111111 12345678777654 66665666889999987


Q ss_pred             CCceEEee-cCCCCEEEEEECCCCcEEEEeC-CCeEEEEeCCCceeeeEEeCC--CCceeeEEcCCCCCEEEeccCCCeE
Q 024372          177 SGKIVQTL-ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMP--CNTESASLEPKLGNIFIAGGEDMWV  252 (268)
Q Consensus       177 ~~~~~~~~-~~~~~v~~~~~s~~g~~l~~~~-~~~v~~wd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~gs~d~~i  252 (268)
                      ........ ..-.....+++.++|+++++.. .+.|..++..... ...+...  ..+..+++.+ +|.++++-..+..|
T Consensus       170 ~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~-~~~~~~~~~~~P~~i~~d~-~g~l~vad~~~~rI  247 (260)
T d1rwia_         170 SNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT-STVLPFTGLNTPLAVAVDS-DRTVYVADRGNDRV  247 (260)
T ss_dssp             TCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC-CEECCCCSCCCEEEEEECT-TCCEEEEEGGGTEE
T ss_pred             cceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe-EEEEccCCCCCeEEEEEeC-CCCEEEEECCCCEE
Confidence            65443322 2234578999999998887764 5677777764432 2222211  2345667776 58888886777777


Q ss_pred             EEEEC
Q 024372          253 HVFDF  257 (268)
Q Consensus       253 ~~wd~  257 (268)
                      +..+.
T Consensus       248 ~~i~~  252 (260)
T d1rwia_         248 VKLTS  252 (260)
T ss_dssp             EEECC
T ss_pred             EEEeC
Confidence            76654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.00  E-value=1.6e-06  Score=69.85  Aligned_cols=241  Identities=13%  Similarity=0.141  Sum_probs=147.0

Q ss_pred             CeeeEEEecCCCCCcEEEEEeC-------CCCeEEeeCCCCCeEEEeeCc----cCcEEEEEecCCCcEEEEeeCCCcEE
Q 024372           18 PVVDLFYSPITPDGFFLVSASK-------DSSPMLRNGETGDWIGTFEGH----KGAVWSCCLDANALFSASGSADFTAK   86 (268)
Q Consensus        18 ~v~~~~f~~~~~dg~~l~s~s~-------d~~i~iw~~~~~~~~~~~~~h----~~~V~~~~~~~~~~~l~s~s~D~~v~   86 (268)
                      ..-+.+|.|   +|++.++...       +++|..||..+++........    .+.-..++|.+++..++.+...+.+.
T Consensus        19 g~EGpa~d~---dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~   95 (314)
T d1pjxa_          19 GAEGPVFDK---NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLL   95 (314)
T ss_dssp             TCEEEEECT---TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEE
T ss_pred             CCeEeEEeC---CCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEE
Confidence            345678874   8887766433       356777888888654333221    12345789999998776666666788


Q ss_pred             EEeCCCCCeeeeecc--C---CeEEEEEECCCCCEEEEeeC---------------CCeEEEEECCCCCCCCeEecCCcc
Q 024372           87 LWDALTGDEKHSFEH--K---HIVRACAFSEDTHLLLTGGF---------------EKILRIFDLNRPDAPPREVGNSSG  146 (268)
Q Consensus        87 iw~~~~~~~~~~~~~--~---~~v~~v~~~~~~~~l~s~~~---------------d~~i~~~d~~~~~~~~~~~~~~~~  146 (268)
                      ..+............  .   ...+.+.+.++|.+.++-..               .+.+..++.+ ++  .........
T Consensus        96 ~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~--~~~~~~~~~  172 (314)
T d1pjxa_          96 VVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ--MIQVDTAFQ  172 (314)
T ss_dssp             EEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC--EEEEEEEES
T ss_pred             EEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-Cc--eeEeeCCcc
Confidence            888765433221111  1   12467889999988776322               1233333332 11  111111111


Q ss_pred             cEEEEEEeCCCC----cEEEEeeCCCeEEEEeCCCCceE------EeecC--CCCEEEEEECCCCcEEEEe-CCCeEEEE
Q 024372          147 SIRTVAWLHSDQ----TILSSCTDSGGVRLWDARSGKIV------QTLET--KSPVTSAEVSRDGRYITTA-DGSSVKFW  213 (268)
Q Consensus       147 ~v~~~~~~~~~~----~~~~~~~~d~~i~iwd~~~~~~~------~~~~~--~~~v~~~~~s~~g~~l~~~-~~~~v~~w  213 (268)
                      .-+.++|.+++.    .++++-+..+.|..||+.....+      ..+..  ......+++.++|++.++. ..+.|..|
T Consensus       173 ~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~  252 (314)
T d1pjxa_         173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVF  252 (314)
T ss_dssp             SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred             eeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEE
Confidence            235677877653    45666566688988887543222      12222  1235689999999987654 56899999


Q ss_pred             eCCCceeeeEEeCCC-CceeeEEcCCCC-CEEEeccCCCeEEEEECC-CCcEEee
Q 024372          214 DANHFGLVKGYNMPC-NTESASLEPKLG-NIFIAGGEDMWVHVFDFH-TGEQIAI  265 (268)
Q Consensus       214 d~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~gs~d~~i~~wd~~-~g~~~~~  265 (268)
                      |.+....+..+..+. .+..+++.+ ++ .++++.+.++.|+..++. .|++.+.
T Consensus       253 dp~~g~~~~~i~~p~~~~t~~afg~-d~~~lyVt~~~~g~i~~~~~~~~G~~~~~  306 (314)
T d1pjxa_         253 GPDGGQPKMRIRCPFEKPSNLHFKP-QTKTIFVTEHENNAVWKFEWQRNGKKQYC  306 (314)
T ss_dssp             CTTCBSCSEEEECSSSCEEEEEECT-TSSEEEEEETTTTEEEEEECSSCBCCCGG
T ss_pred             eCCCCEEEEEEECCCCCEEEEEEeC-CCCEEEEEECCCCcEEEEECCCCChhhhc
Confidence            988766666666654 345677766 45 478888889999999875 5766554

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.00  E-value=3.4e-07  Score=73.33  Aligned_cols=206  Identities=12%  Similarity=0.027  Sum_probs=134.7

Q ss_pred             CeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEEC
Q 024372           52 DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDL  131 (268)
Q Consensus        52 ~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~  131 (268)
                      +.+.++... ..+..++++|||.++++...+++|+.|+.. +...........+..++|+++++++++...++.+..++.
T Consensus        19 ~v~~~~p~~-~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~   96 (302)
T d2p4oa1          19 KIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPD-GNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSL   96 (302)
T ss_dssp             EEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEE
T ss_pred             cEEEECCCC-CCcCCEEECCCCCEEEEeCCCCEEEEEeCC-CCEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEe
Confidence            344455322 257789999999999999999999888865 344444556678899999999999998888888888876


Q ss_pred             CCCCCCCeEe--cCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecC-----------CCCEEEEEECCC
Q 024372          132 NRPDAPPREV--GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-----------KSPVTSAEVSRD  198 (268)
Q Consensus       132 ~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-----------~~~v~~~~~s~~  198 (268)
                      ..........  .........+.+.+++ .++++...++.+..+|...+........           ....+.+.+..+
T Consensus        97 ~~~~~~~~~~~~~~~~~~~n~i~~~~~g-~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~  175 (302)
T d2p4oa1          97 VKSDGTVETLLTLPDAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGN  175 (302)
T ss_dssp             ECTTSCEEEEEECTTCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETT
T ss_pred             cccccceeeccccCCccccceeEEccCC-CEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCC
Confidence            4333222222  1223456777776665 5666656668898889887754322211           123567777665


Q ss_pred             CcEEEEeCCCeEEEEeCCCceee---eEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcE
Q 024372          199 GRYITTADGSSVKFWDANHFGLV---KGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ  262 (268)
Q Consensus       199 g~~l~~~~~~~v~~wd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~  262 (268)
                      ..+++....+.|..++.......   ..+........+++.+ +|.++++...++.|..++.. |+.
T Consensus       176 ~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~-dG~l~va~~~~~~V~~i~p~-G~~  240 (302)
T d2p4oa1         176 FLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDV-EGNLYGATHIYNSVVRIAPD-RST  240 (302)
T ss_dssp             EEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBT-TCCEEEECBTTCCEEEECTT-CCE
T ss_pred             ceeeecCCCCeEEeccccccccccccccccCCCCCcceEECC-CCCEEEEEcCCCcEEEECCC-CCE
Confidence            44444456788888887543322   2222233445677776 68888888888889999764 553

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.99  E-value=1.9e-07  Score=74.86  Aligned_cols=221  Identities=10%  Similarity=0.076  Sum_probs=140.0

Q ss_pred             CeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCe--
Q 024372           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE--   95 (268)
Q Consensus        18 ~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~--   95 (268)
                      .+..+++.|   ||+++++...+++|..++.. ++.. .+....+.+..++|++++.++++...++.+..|+......  
T Consensus        29 ~~e~iAv~p---dG~l~vt~~~~~~I~~i~p~-g~~~-~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~  103 (302)
T d2p4oa1          29 FLENLASAP---DGTIFVTNHEVGEIVSITPD-GNQQ-IHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV  103 (302)
T ss_dssp             CEEEEEECT---TSCEEEEETTTTEEEEECTT-CCEE-EEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred             CcCCEEECC---CCCEEEEeCCCCEEEEEeCC-CCEE-EEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccce
Confidence            466888874   99999999999988888754 4433 3444567889999999999888888888888877644332  


Q ss_pred             ee--eeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEec---------CCcccEEEEEEeCCCCcEEEEe
Q 024372           96 KH--SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG---------NSSGSIRTVAWLHSDQTILSSC  164 (268)
Q Consensus        96 ~~--~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~~~~~~  164 (268)
                      ..  ........+.+.+.++++++++-+.++.+..+|...+........         ........+.+.  +..++.+.
T Consensus       104 ~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~  181 (302)
T d2p4oa1         104 ETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSN  181 (302)
T ss_dssp             EEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEE
T ss_pred             eeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc--CCceeeec
Confidence            11  222445678899999999998888888888888764321111110         111233455553  34566666


Q ss_pred             eCCCeEEEEeCCCCceE---EeecCCCCEEEEEECCCCcEEEEe-CCCeEEEEeCCCce-eeeEEeCC-CCceeeEEc--
Q 024372          165 TDSGGVRLWDARSGKIV---QTLETKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFG-LVKGYNMP-CNTESASLE--  236 (268)
Q Consensus       165 ~~d~~i~iwd~~~~~~~---~~~~~~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~-~~~~~~~~-~~~~~~~~~--  236 (268)
                      +..+.|..++.......   ..+........+++.++|+++++. .++.|..++..... .+.....+ ..+..++|.  
T Consensus       182 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~  261 (302)
T d2p4oa1         182 TEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQT  261 (302)
T ss_dssp             TTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCS
T ss_pred             CCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCC
Confidence            77788888887654322   112222335679999999987664 56788888765321 12222222 234566763  


Q ss_pred             CCCCCEEEe
Q 024372          237 PKLGNIFIA  245 (268)
Q Consensus       237 ~~~~~~~~~  245 (268)
                      .++++.|+.
T Consensus       262 ~~D~~~Lyv  270 (302)
T d2p4oa1         262 EGDCTAIYV  270 (302)
T ss_dssp             TTTTTEEEE
T ss_pred             CCCCCEEEE
Confidence            224554443

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.95  E-value=3e-06  Score=68.27  Aligned_cols=233  Identities=9%  Similarity=0.028  Sum_probs=145.3

Q ss_pred             eeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCC----CcEEEEeCCCCC
Q 024372           19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD----FTAKLWDALTGD   94 (268)
Q Consensus        19 v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D----~~v~iw~~~~~~   94 (268)
                      +-+++|.+   +|++.++-...+.|.-|+...++....+.........+++.+++.++++...+    +.+...+.....
T Consensus        42 lEG~~~D~---~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~  118 (319)
T d2dg1a1          42 LEGLNFDR---QGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN  118 (319)
T ss_dssp             EEEEEECT---TSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS
T ss_pred             cEeCEECC---CCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCce
Confidence            34788874   88888888888888888888877666665556677889999999877665432    234444544444


Q ss_pred             eeeeecc---CCeEEEEEECCCCCEEEEeeCC------CeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEee
Q 024372           95 EKHSFEH---KHIVRACAFSEDTHLLLTGGFE------KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT  165 (268)
Q Consensus        95 ~~~~~~~---~~~v~~v~~~~~~~~l~s~~~d------~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  165 (268)
                      .......   ....+.+.+.++|.+.++....      +.+..++....  ........-...+.++|++++..++++-+
T Consensus       119 ~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~--~~~~~~~~~~~pnGia~s~dg~~lyvad~  196 (319)
T d2dg1a1         119 LQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR--TVTPIIQNISVANGIALSTDEKVLWVTET  196 (319)
T ss_dssp             CEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC--CEEEEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred             eeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccc--eeEEEeeccceeeeeeeccccceEEEecc
Confidence            4333332   2346788999999876653221      23444444321  12222112223467899998887777777


Q ss_pred             CCCeEEEEeCCCC-ceEE--------eecCCCCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeCCCC------
Q 024372          166 DSGGVRLWDARSG-KIVQ--------TLETKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCN------  229 (268)
Q Consensus       166 ~d~~i~iwd~~~~-~~~~--------~~~~~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~~~------  229 (268)
                      ..+.|..||+... ....        ..........+++.++|++.++. .++.|..+|- .++.+..+..+..      
T Consensus       197 ~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~  275 (319)
T d2dg1a1         197 TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHML  275 (319)
T ss_dssp             GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSC
T ss_pred             cCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCc
Confidence            7789999997532 2111        11112336789999999876664 6789999996 5677777776542      


Q ss_pred             -ceeeEEcCCCCCEEEecc-----CCCeEEEEEC
Q 024372          230 -TESASLEPKLGNIFIAGG-----EDMWVHVFDF  257 (268)
Q Consensus       230 -~~~~~~~~~~~~~~~~gs-----~d~~i~~wd~  257 (268)
                       ...+++.+....++++..     ..+.|+..+.
T Consensus       276 ~~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~~~~  309 (319)
T d2dg1a1         276 RSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNG  309 (319)
T ss_dssp             BCCEEEECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred             eeeeEEEeCCCCEEEEEcCCCCcCCceeEEEEeC
Confidence             334555553334444432     2345666665

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.84  E-value=2.1e-06  Score=67.73  Aligned_cols=174  Identities=11%  Similarity=0.232  Sum_probs=118.8

Q ss_pred             CCCCeEEeeCCCCCeEEEee-CccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeec---cCCeEEEEEECCCC
Q 024372           39 KDSSPMLRNGETGDWIGTFE-GHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE---HKHIVRACAFSEDT  114 (268)
Q Consensus        39 ~d~~i~iw~~~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~---~~~~v~~v~~~~~~  114 (268)
                      .+..+..++. .++....+. ........+++.+++.++++....+.+.+++.. +..+..+.   +......+++.+++
T Consensus        91 ~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g  168 (279)
T d1q7fa_          91 PTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQ  168 (279)
T ss_dssp             GGCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSS
T ss_pred             Cccccccccc-cccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-Cceeecccccccccccceeeeccce
Confidence            3344455553 566666664 234556788889999888777777778888764 44444442   33456778899999


Q ss_pred             CEEEEeeCCCeEEEEECCCCCCCCeEec--CCcccEEEEEEeCCCCcEEEEe-eCCCeEEEEeCCCCceEEeecC---CC
Q 024372          115 HLLLTGGFEKILRIFDLNRPDAPPREVG--NSSGSIRTVAWLHSDQTILSSC-TDSGGVRLWDARSGKIVQTLET---KS  188 (268)
Q Consensus       115 ~~l~s~~~d~~i~~~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~-~~d~~i~iwd~~~~~~~~~~~~---~~  188 (268)
                      +++++....+.|++||... +. ...+.  ........+++.+++. ++++- ..++.|.+++ ++|+.+.++..   ..
T Consensus       169 ~i~v~d~~~~~V~~~d~~G-~~-~~~~g~~g~~~~P~giavD~~G~-i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~  244 (279)
T d1q7fa_         169 EIFISDNRAHCVKVFNYEG-QY-LRQIGGEGITNYPIGVGINSNGE-ILIADNHNNFNLTIFT-QDGQLISALESKVKHA  244 (279)
T ss_dssp             EEEEEEGGGTEEEEEETTC-CE-EEEESCTTTSCSEEEEEECTTCC-EEEEECSSSCEEEEEC-TTSCEEEEEEESSCCS
T ss_pred             eEEeeeccccceeeeecCC-ce-eeeecccccccCCcccccccCCe-EEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCC
Confidence            9988888899999999653 22 22332  1223456788888775 55443 3345799998 45887776642   23


Q ss_pred             CEEEEEECCCCcEEEEeCCCeEEEEeCCCc
Q 024372          189 PVTSAEVSRDGRYITTADGSSVKFWDANHF  218 (268)
Q Consensus       189 ~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~  218 (268)
                      ....+++.|+|.++++..++.|++|..+..
T Consensus       245 ~p~~vav~~dG~l~V~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         245 QCFDVALMDDGSVVLASKDYRLYIYRYVQL  274 (279)
T ss_dssp             CEEEEEEETTTEEEEEETTTEEEEEECSCC
T ss_pred             CEeEEEEeCCCcEEEEeCCCeEEEEEeeee
Confidence            578999999999888877889999987654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.77  E-value=1.6e-05  Score=65.02  Aligned_cols=167  Identities=9%  Similarity=0.042  Sum_probs=102.5

Q ss_pred             CcEEEEEecCCCcEEEEee-CCCcEEEEeCCCCCeeee------eccCCeEEEEEECCCCCEEEEe-eCCCeEEEEECCC
Q 024372           62 GAVWSCCLDANALFSASGS-ADFTAKLWDALTGDEKHS------FEHKHIVRACAFSEDTHLLLTG-GFEKILRIFDLNR  133 (268)
Q Consensus        62 ~~V~~~~~~~~~~~l~s~s-~D~~v~iw~~~~~~~~~~------~~~~~~v~~v~~~~~~~~l~s~-~~d~~i~~~d~~~  133 (268)
                      ..+..+.|+|++++++.+. ....|.+|+.........      .......+.+.|+|++++++.. -.+++|.+|+...
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~  224 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP  224 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecC
Confidence            3478999999999876665 345788877544332221      1234567889999999987654 4788999999865


Q ss_pred             CCCCCeEe-c-----------------CCcccEEEEEEeCCCCcEEEEeeCCC-----eEEEEeCCCCceEE-e--e---
Q 024372          134 PDAPPREV-G-----------------NSSGSIRTVAWLHSDQTILSSCTDSG-----GVRLWDARSGKIVQ-T--L---  184 (268)
Q Consensus       134 ~~~~~~~~-~-----------------~~~~~v~~~~~~~~~~~~~~~~~~d~-----~i~iwd~~~~~~~~-~--~---  184 (268)
                      ........ .                 ........+.++|++..++++...++     .|..|++.....+. .  +   
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~  304 (365)
T d1jofa_         225 ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT  304 (365)
T ss_dssp             TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC
T ss_pred             CCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEE
Confidence            43221110 0                 01122446788899888877754433     37777775432221 1  1   


Q ss_pred             c-CCCCEEEEEECC-CCcEEEEe--CCCeEEEEeCCCc--eeeeEEeCCC
Q 024372          185 E-TKSPVTSAEVSR-DGRYITTA--DGSSVKFWDANHF--GLVKGYNMPC  228 (268)
Q Consensus       185 ~-~~~~v~~~~~s~-~g~~l~~~--~~~~v~~wd~~~~--~~~~~~~~~~  228 (268)
                      . .......++++| +|++|..+  .++.|.+|++...  ..+.....+.
T Consensus       305 ~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~l~~~~~~~vp~  354 (365)
T d1jofa_         305 PTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFLHRVARVRIPE  354 (365)
T ss_dssp             SSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEEEEEEEEECCS
T ss_pred             EcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCcCcEEEEEECCC
Confidence            1 123456799998 79987654  4689999986543  3334444443

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.67  E-value=6e-06  Score=64.32  Aligned_cols=191  Identities=10%  Similarity=-0.023  Sum_probs=122.6

Q ss_pred             eeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeee
Q 024372           19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHS   98 (268)
Q Consensus        19 v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~   98 (268)
                      ..++++.|   +|.+.++....+.+++++..+++.+..+.+ ......+++.+++.++++-..+..+..++.........
T Consensus        59 p~gvav~~---~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~  134 (260)
T d1rwia_          59 PQGLAVDG---AGTVYVTDFNNRVVTLAAGSNNQTVLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL  134 (260)
T ss_dssp             CCCEEECT---TCCEEEEETTTEEEEECTTCSCCEECCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEEC
T ss_pred             ceEEEEcC---CCCEEEeeeeeceeeeeeeccceeeeeeee-eeecccccccccceeEeeccccccccccccccceeeee
Confidence            35777874   788887777777777776666665544433 24567899999988877766667777777654433222


Q ss_pred             e-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCC
Q 024372           99 F-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS  177 (268)
Q Consensus        99 ~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~  177 (268)
                      . ........++++++++++++...++.|..+|..... ..............+++.+++ .++++....+.|..++...
T Consensus       135 ~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~-~~~~~~~~~~~p~gi~~d~~g-~l~vsd~~~~~i~~~~~~~  212 (260)
T d1rwia_         135 PFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN-QVVLPFTDITAPWGIAVDEAG-TVYVTEHNTNQVVKLLAGS  212 (260)
T ss_dssp             CCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCC-EEECCCSSCCSEEEEEECTTC-CEEEEETTTTEEEEECTTC
T ss_pred             eecccCCcceeeecCCCCEeeeccccccccccccccce-eeeeeccccCCCccceeeeee-eeeeeecCCCEEEEEeCCC
Confidence            1 122345678899999988888888889999875422 111111222345678887765 5777777778888888765


Q ss_pred             CceEEee-cCCCCEEEEEECCCCcEEEEe-CCCeEEEEeC
Q 024372          178 GKIVQTL-ETKSPVTSAEVSRDGRYITTA-DGSSVKFWDA  215 (268)
Q Consensus       178 ~~~~~~~-~~~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~  215 (268)
                      ....... ..-.....++++++|+++++. .++.|+.++.
T Consensus       213 ~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         213 TTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             SCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             CeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence            4322211 122457899999999887764 3456665543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.55  E-value=0.0001  Score=58.96  Aligned_cols=200  Identities=13%  Similarity=0.066  Sum_probs=120.5

Q ss_pred             CcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeee-ccCCeEEEEEECCCCCEEEEeeCC----CeEEEEECCCCCC
Q 024372           62 GAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFE----KILRIFDLNRPDA  136 (268)
Q Consensus        62 ~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d----~~i~~~d~~~~~~  136 (268)
                      -.+..++|.+++.+.++-...+.|..|+..+......+ ........++++++++++++...+    +.+...+..... 
T Consensus        40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~-  118 (319)
T d2dg1a1          40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN-  118 (319)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS-
T ss_pred             cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCce-
Confidence            34567889999987777778889999998776654443 344557789999999988765332    234444433222 


Q ss_pred             CCeEecC--CcccEEEEEEeCCCCcEEEEeeC------CCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEE-EE-eC
Q 024372          137 PPREVGN--SSGSIRTVAWLHSDQTILSSCTD------SGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYI-TT-AD  206 (268)
Q Consensus       137 ~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~------d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l-~~-~~  206 (268)
                      .......  .......+.+.+++. +.++...      .+.+..++...+........-...+.++|+|+++.| ++ ..
T Consensus       119 ~~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~  197 (319)
T d2dg1a1         119 LQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETT  197 (319)
T ss_dssp             CEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGG
T ss_pred             eeeeccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEeccc
Confidence            1111211  122356677777765 4444221      134655665544332222323447889999999754 33 34


Q ss_pred             CCeEEEEeCCCc-eeeeEE------eCC--CCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEee
Q 024372          207 GSSVKFWDANHF-GLVKGY------NMP--CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       207 ~~~v~~wd~~~~-~~~~~~------~~~--~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~  265 (268)
                      .+.|..||+... ......      ...  ..+..+++.. +|.++++...++.|.+||- .|+.+..
T Consensus       198 ~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~-~G~l~Va~~~~g~V~~~~p-~G~~l~~  263 (319)
T d2dg1a1         198 ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDS-DDNLYVAMYGQGRVLVFNK-RGYPIGQ  263 (319)
T ss_dssp             GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBT-TCCEEEEEETTTEEEEECT-TSCEEEE
T ss_pred             CCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcC-CCCEEEEEcCCCEEEEECC-CCcEEEE
Confidence            678999987532 111111      111  1234456665 6898888888999999995 6887754

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.53  E-value=2.7e-05  Score=60.32  Aligned_cols=227  Identities=13%  Similarity=0.074  Sum_probs=118.3

Q ss_pred             CC--CcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEee-CC---C--cEEEEeCCCCCeeeeec
Q 024372           29 PD--GFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS-AD---F--TAKLWDALTGDEKHSFE  100 (268)
Q Consensus        29 ~d--g~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s-~D---~--~v~iw~~~~~~~~~~~~  100 (268)
                      ||  |+.+|-.+ ++.|-+.|+..++.. .|..+.+.+...+|+|||+.||-.+ .+   .  .+.+.+..++.......
T Consensus         8 Pdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~   85 (281)
T d1k32a2           8 PDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITY   85 (281)
T ss_dssp             EEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCC
T ss_pred             CCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeee
Confidence            57  88887654 445666688888754 5666777888999999999887443 22   2  36666776666544322


Q ss_pred             c-------CCeEEEEEECCCCCEEEEeeCC------CeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCC
Q 024372          101 H-------KHIVRACAFSEDTHLLLTGGFE------KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS  167 (268)
Q Consensus       101 ~-------~~~v~~v~~~~~~~~l~s~~~d------~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d  167 (268)
                      .       ........|+|+++.++.....      ..+...+.....  ...  ...+.... .+.+++..++......
T Consensus        86 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~-~~~~~~~~~~~~~~~~  160 (281)
T d1k32a2          86 FSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGIN--FVP--LNLGPATH-ILFADGRRVIGRNTFE  160 (281)
T ss_dssp             CCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTE--EEE--CCSCSCSE-EEEETTEEEEEESCSC
T ss_pred             cCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCce--eEE--ecCCccce-eeecCCCeEEEeeccc
Confidence            1       1234577899999988864322      223333432211  111  11111112 2233333333322211


Q ss_pred             C-----------eEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEeC--CCeEEEEeCCCceeeeEEeCCCCceeeE
Q 024372          168 G-----------GVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTAD--GSSVKFWDANHFGLVKGYNMPCNTESAS  234 (268)
Q Consensus       168 ~-----------~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~v~~wd~~~~~~~~~~~~~~~~~~~~  234 (268)
                      .           ...+......................++++..+.....  ...|.++|+...+..+ +..........
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~-lt~~~~~~~~~  239 (281)
T d1k32a2         161 LPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRK-HTSFTDYYPRH  239 (281)
T ss_dssp             CTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEE-CCCCCSSCEEE
T ss_pred             cceeeeeccCCcceeeeeccccceeeccCCccccceeeeeccccceecccccccceEEEeCCCCceEE-eecCCCccccc
Confidence            1           11122222222222222333344555666654443332  3467788887654332 22222223335


Q ss_pred             EcCCCCCEEEeccCCCeEEEEECCCCcEEee
Q 024372          235 LEPKLGNIFIAGGEDMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       235 ~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~  265 (268)
                      +++ +|+.|+- ..++.|+++|+.+|+...+
T Consensus       240 ~Sp-DG~~I~f-~~~~~l~~~d~~~g~~~~i  268 (281)
T d1k32a2         240 LNT-DGRRILF-SKGGSIYIFNPDTEKIEKI  268 (281)
T ss_dssp             EEE-SSSCEEE-EETTEEEEECTTTCCEEEC
T ss_pred             CcC-CCCEEEE-EeCCEEEEEECCCCCEEEe
Confidence            666 5665553 3356799999998886554

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.48  E-value=2.8e-05  Score=62.22  Aligned_cols=192  Identities=11%  Similarity=0.105  Sum_probs=114.2

Q ss_pred             eeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeC-ccC----cEEEEEecCCCcEEEEeeC-------------
Q 024372           20 VDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG-HKG----AVWSCCLDANALFSASGSA-------------   81 (268)
Q Consensus        20 ~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~-h~~----~V~~~~~~~~~~~l~s~s~-------------   81 (268)
                      .+++|.|   +|+.|+++.....+...+...+. ...+.. ..+    ....+++.++|.+.+|-..             
T Consensus        74 ~Gl~~~~---dg~~l~vad~~~~i~~~~~~g~~-~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~  149 (314)
T d1pjxa_          74 AGCQCDR---DANQLFVADMRLGLLVVQTDGTF-EEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQ  149 (314)
T ss_dssp             EEEEECS---SSSEEEEEETTTEEEEEETTSCE-EECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTS
T ss_pred             eeEEEeC---CCCEEEEEECCCeEEEEeCCCcE-EEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceec
Confidence            4688874   78878778776777777765543 222211 111    2466889999987776422             


Q ss_pred             --CCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCC-----EEEEeeCCCeEEEEECCCCCCCCe-E-e----cCCcccE
Q 024372           82 --DFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTH-----LLLTGGFEKILRIFDLNRPDAPPR-E-V----GNSSGSI  148 (268)
Q Consensus        82 --D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~-----~l~s~~~d~~i~~~d~~~~~~~~~-~-~----~~~~~~v  148 (268)
                        ++.|..++. .+........-..-+.++|++++.     +.++-+..+.|..||+........ . .    ....+..
T Consensus       150 ~~~G~v~~~~~-dg~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~p  228 (314)
T d1pjxa_         150 EKFGSIYCFTT-DGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGA  228 (314)
T ss_dssp             SSCEEEEEECT-TSCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEE
T ss_pred             cCCceEEEEee-cCceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccc
Confidence              123333333 222222222223345788888664     445556778888888753321111 1 1    0112233


Q ss_pred             EEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCC-CCEEEEEECCCCc-EEEE-eCCCeEEEEeCCC
Q 024372          149 RTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGR-YITT-ADGSSVKFWDANH  217 (268)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~s~~g~-~l~~-~~~~~v~~wd~~~  217 (268)
                      ..+++..++ ++.++....+.|.+||.+.++.+..+... ..+.+++|.|+++ ++++ +.++.|...++..
T Consensus       229 dGiavD~~G-nlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         229 DGMDFDEDN-NLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEEEBTTC-CEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             eeeEEecCC-cEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            457776655 56666666689999999988776666543 4578999999986 3344 4567888878654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=0.00042  Score=58.33  Aligned_cols=193  Identities=13%  Similarity=0.026  Sum_probs=114.8

Q ss_pred             CCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCc---cCcEEEEEecCCCcEEEEe---------eCCCcEEEEeCCCCCee
Q 024372           29 PDGFFLVSASKDSSPMLRNGETGDWIGTFEGH---KGAVWSCCLDANALFSASG---------SADFTAKLWDALTGDEK   96 (268)
Q Consensus        29 ~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h---~~~V~~~~~~~~~~~l~s~---------s~D~~v~iw~~~~~~~~   96 (268)
                      +++.++. -..++.+.+|++.+++....+..+   .-.+....++||+++++-.         +..+...++|+.++...
T Consensus        26 ~~~~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~  104 (465)
T d1xfda1          26 SDTEFIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ  104 (465)
T ss_dssp             SSSCBCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE
T ss_pred             CCCcEEE-EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCcee
Confidence            3665554 456788999999988654333332   2356677899999987654         33467888899887654


Q ss_pred             eeec---cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEe-cCCcc-----------------cEEEEEEeC
Q 024372           97 HSFE---HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV-GNSSG-----------------SIRTVAWLH  155 (268)
Q Consensus        97 ~~~~---~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~-~~~~~-----------------~v~~~~~~~  155 (268)
                      ....   ....+....|||||+.+|-.. ++.+.+.+...+.. .+.. ....+                 .-..+-|+|
T Consensus       105 ~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~-~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSP  182 (465)
T d1xfda1         105 SLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQA-IRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP  182 (465)
T ss_dssp             ECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCC-EEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT
T ss_pred             eccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCce-EEEecccCcceeeccccchhhhhhhccccceEEECC
Confidence            3322   122455678999999988765 56777777654322 2211 11111                 124667899


Q ss_pred             CCCcEEEEeeCCCeEEEE---------------------------------eCCCCceEEe-ecC------CCCEEEEEE
Q 024372          156 SDQTILSSCTDSGGVRLW---------------------------------DARSGKIVQT-LET------KSPVTSAEV  195 (268)
Q Consensus       156 ~~~~~~~~~~~d~~i~iw---------------------------------d~~~~~~~~~-~~~------~~~v~~~~~  195 (268)
                      ++..++..-.++..+..+                                 |+.++..... ...      ..-+..+.|
T Consensus       183 Dgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W  262 (465)
T d1xfda1         183 DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKW  262 (465)
T ss_dssp             TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEE
T ss_pred             CCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEE
Confidence            998877665444444433                                 4333221111 100      012567889


Q ss_pred             CCCCcEEEEeC--C---CeEEEEeCCCceeeeEE
Q 024372          196 SRDGRYITTAD--G---SSVKFWDANHFGLVKGY  224 (268)
Q Consensus       196 s~~g~~l~~~~--~---~~v~~wd~~~~~~~~~~  224 (268)
                      +|++++++...  +   ..+.++|..++.+...+
T Consensus       263 ~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~  296 (465)
T d1xfda1         263 ATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKH  296 (465)
T ss_dssp             SSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEE
T ss_pred             cCCCeEEEEEEccccccceEEEEcCCCCcEEEEE
Confidence            99998776532  2   25778899887655444

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.20  E-value=0.00073  Score=53.17  Aligned_cols=217  Identities=10%  Similarity=0.014  Sum_probs=138.5

Q ss_pred             EEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeecc
Q 024372           22 LFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEH  101 (268)
Q Consensus        22 ~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~  101 (268)
                      -.|++  .+|.+..+--..+.|.-||..+++.. .+. ....+.++++.+++.++++. .+ -+.++|..+++.......
T Consensus        23 p~wd~--~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va~-~~-gl~~~d~~tg~~~~l~~~   96 (295)
T d2ghsa1          23 PTFDP--ASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAEL   96 (295)
T ss_dssp             EEEET--TTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECS
T ss_pred             CeEEC--CCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCCCEEEEE-eC-ccEEeecccceeeEEeee
Confidence            44664  36666666667788888998888643 332 23567788888888877654 44 588899988876443321


Q ss_pred             -----CCeEEEEEECCCCCEEEEeeCC----CeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEE
Q 024372          102 -----KHIVRACAFSEDTHLLLTGGFE----KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRL  172 (268)
Q Consensus       102 -----~~~v~~v~~~~~~~~l~s~~~d----~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~i  172 (268)
                           ...++.+.+.|+|++.++....    +.-.+|.+..++.  .........-+.++|++++..++.+-+..+.|..
T Consensus        97 ~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~--~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~  174 (295)
T d2ghsa1          97 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKV--TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMR  174 (295)
T ss_dssp             STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEE--EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEE
T ss_pred             ecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcE--EEEeeccCCcceeeecCCCceEEEeecccceeeE
Confidence                 2257788899999877664322    2234454433321  1111112234678889988888777777788988


Q ss_pred             EeCCC--C----ceE--Eeec-CCCCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeCCCC-ceeeEEcC-CCC
Q 024372          173 WDARS--G----KIV--QTLE-TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCN-TESASLEP-KLG  240 (268)
Q Consensus       173 wd~~~--~----~~~--~~~~-~~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~~~-~~~~~~~~-~~~  240 (268)
                      +++..  +    +..  ..+. .......+++.++|++.++. .++.|..||. .++.+..+..+.. +.+++|-. +..
T Consensus       175 ~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~  253 (295)
T d2ghsa1         175 VPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDAS  253 (295)
T ss_dssp             EEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSC
T ss_pred             eeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCCCCC
Confidence            87642  1    111  1122 23447889999999987765 5678999996 4678888888754 55666653 335


Q ss_pred             CEEEecc
Q 024372          241 NIFIAGG  247 (268)
Q Consensus       241 ~~~~~gs  247 (268)
                      .+++|.+
T Consensus       254 ~LyvTta  260 (295)
T d2ghsa1         254 RLLVTSA  260 (295)
T ss_dssp             EEEEEEB
T ss_pred             EEEEEEC
Confidence            5677643

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=0.00058  Score=57.41  Aligned_cols=180  Identities=15%  Similarity=0.068  Sum_probs=103.6

Q ss_pred             CeeeEEEecCCCCCcEEEEEeC---------CCCeEEeeCCCCCeEEEe--eCccCcEEEEEecCCCcEEEEeeCCCcEE
Q 024372           18 PVVDLFYSPITPDGFFLVSASK---------DSSPMLRNGETGDWIGTF--EGHKGAVWSCCLDANALFSASGSADFTAK   86 (268)
Q Consensus        18 ~v~~~~f~~~~~dg~~l~s~s~---------d~~i~iw~~~~~~~~~~~--~~h~~~V~~~~~~~~~~~l~s~s~D~~v~   86 (268)
                      .+....|+   |||++++.+..         .+...++|+.+++...-.  ......+....|+|||+.+|-.. ++.+.
T Consensus        62 ~~~~~~~S---pD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~  137 (465)
T d1xfda1          62 RAIRYEIS---PDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIY  137 (465)
T ss_dssp             TCSEEEEC---TTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEE
T ss_pred             ccceeEEC---CCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEE
Confidence            45555666   59999887743         345567888888654321  22334455678999999887654 66788


Q ss_pred             EEeCCCCCeeeeecc--CC-----------------eEEEEEECCCCCEEEEeeCC-CeEE-------------------
Q 024372           87 LWDALTGDEKHSFEH--KH-----------------IVRACAFSEDTHLLLTGGFE-KILR-------------------  127 (268)
Q Consensus        87 iw~~~~~~~~~~~~~--~~-----------------~v~~v~~~~~~~~l~s~~~d-~~i~-------------------  127 (268)
                      +.+..++...+....  ..                 .-..+.|||||+.||....| ..+.                   
T Consensus       138 ~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~  217 (465)
T d1xfda1         138 YCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYH  217 (465)
T ss_dssp             EESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEE
T ss_pred             EEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeee
Confidence            888766654433211  11                 11467899999999976432 2222                   


Q ss_pred             --------------EEECCCCCCCCeEe-----cCCcccEEEEEEeCCCCcEEEEeeCC---CeEEEEeCCCCceEEeec
Q 024372          128 --------------IFDLNRPDAPPREV-----GNSSGSIRTVAWLHSDQTILSSCTDS---GGVRLWDARSGKIVQTLE  185 (268)
Q Consensus       128 --------------~~d~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~d---~~i~iwd~~~~~~~~~~~  185 (268)
                                    ++|+..+.......     ......+..+.|.+++..++.....+   ..|.++|..++++...+.
T Consensus       218 Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~  297 (465)
T d1xfda1         218 YPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHE  297 (465)
T ss_dssp             CCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEE
T ss_pred             ccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEE
Confidence                          33332221110000     01112356678887765444443322   258889999998765443


Q ss_pred             C--CCC----EEEEEECCCCcE
Q 024372          186 T--KSP----VTSAEVSRDGRY  201 (268)
Q Consensus       186 ~--~~~----v~~~~~s~~g~~  201 (268)
                      .  ...    -....|+|+|+.
T Consensus       298 e~~~~wv~~~~~~p~~~~dg~~  319 (465)
T d1xfda1         298 DESEAWLHRQNEEPVFSKDGRK  319 (465)
T ss_dssp             EECSSCCCCCCCCCEECTTSCS
T ss_pred             EcCCceEeccCCceeEccCCCe
Confidence            1  111    234578999973

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.78  E-value=0.0022  Score=48.93  Aligned_cols=202  Identities=13%  Similarity=0.066  Sum_probs=98.2

Q ss_pred             cEEeeecCCCeeeEEEecCCCCCcEEEEEeC-CC-----CeEEeeCCCCCeEEEee------CccCcEEEEEecCCCcEE
Q 024372            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASK-DS-----SPMLRNGETGDWIGTFE------GHKGAVWSCCLDANALFS   76 (268)
Q Consensus         9 ~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~-d~-----~i~iw~~~~~~~~~~~~------~h~~~V~~~~~~~~~~~l   76 (268)
                      +..+..+.+.+...+|+|   ||++||-... ++     .+.+.+...++...-..      .........+|+|+++.+
T Consensus        33 ~~~Lt~~~~~~~~p~~SP---DG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l  109 (281)
T d1k32a2          33 TRKIVSNLGVINNARFFP---DGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLI  109 (281)
T ss_dssp             EEEEECSSSEEEEEEECT---TSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEE
T ss_pred             EEEEecCCCcccCEEECC---CCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEE
Confidence            444556677788888985   9999986542 22     24455776675443211      122345677899999887


Q ss_pred             EEeeCC------CcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCe-----------EEEEECCCCCCCCe
Q 024372           77 ASGSAD------FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKI-----------LRIFDLNRPDAPPR  139 (268)
Q Consensus        77 ~s~s~D------~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~-----------i~~~d~~~~~~~~~  139 (268)
                      +.....      ..+...+.........  .........+.+.+..++.......           ..+.......  ..
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  185 (281)
T d1k32a2         110 ISTDAMQPFSSMTCLYRVENDGINFVPL--NLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGA--FK  185 (281)
T ss_dssp             EEECTTSSSTTCCEEEEEEGGGTEEEEC--CSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTE--EE
T ss_pred             EEEEccCCCccceeeeeecCCCceeEEe--cCCccceeeecCCCeEEEeeccccceeeeeccCCcceeeeeccccc--ee
Confidence            754321      1233344433322111  1111222223333333333221110           1111110000  01


Q ss_pred             EecCCcccEEEEEEeCCCCcEEEEeeCC--CeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEeCCCeEEEEeCCC
Q 024372          140 EVGNSSGSIRTVAWLHSDQTILSSCTDS--GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANH  217 (268)
Q Consensus       140 ~~~~~~~~v~~~~~~~~~~~~~~~~~~d--~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~  217 (268)
                      .............+.++  .++.....+  ..|.++|+.+++..+.... .......++|||+.|+-..++.|.++|+..
T Consensus       186 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~d~~g~~~~~lt~~-~~~~~~~~SpDG~~I~f~~~~~l~~~d~~~  262 (281)
T d1k32a2         186 KIVDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKHTSF-TDYYPRHLNTDGRRILFSKGGSIYIFNPDT  262 (281)
T ss_dssp             EEECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEECCCC-CSSCEEEEEESSSCEEEEETTEEEEECTTT
T ss_pred             eccCCccccceeeeecc--ccceecccccccceEEEeCCCCceEEeecC-CCcccccCcCCCCEEEEEeCCEEEEEECCC
Confidence            11111122233333332  233332222  3577788887765443332 222234689999988877778899999977


Q ss_pred             cee
Q 024372          218 FGL  220 (268)
Q Consensus       218 ~~~  220 (268)
                      .+.
T Consensus       263 g~~  265 (281)
T d1k32a2         263 EKI  265 (281)
T ss_dssp             CCE
T ss_pred             CCE
Confidence            653

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.73  E-value=0.0058  Score=47.75  Aligned_cols=193  Identities=13%  Similarity=0.020  Sum_probs=112.7

Q ss_pred             ecCC-CcEEEEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEec---CC
Q 024372           69 LDAN-ALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG---NS  144 (268)
Q Consensus        69 ~~~~-~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~---~~  144 (268)
                      |.+. +.+..+--..+.|..||..+++. ..+..+..+.++.+.+++.++++ +.+ -+..+|..+++...-...   ..
T Consensus        25 wd~~~~~l~wvDi~~~~I~r~d~~~g~~-~~~~~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~  101 (295)
T d2ghsa1          25 FDPASGTAWWFNILERELHELHLASGRK-TVHALPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLP  101 (295)
T ss_dssp             EETTTTEEEEEEGGGTEEEEEETTTTEE-EEEECSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCT
T ss_pred             EECCCCEEEEEECCCCEEEEEECCCCeE-EEEECCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeecCCC
Confidence            4443 33333333457777788777654 34555667888888888877765 444 578899876542111111   11


Q ss_pred             cccEEEEEEeCCCCcEEEEeeC---CCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEE-E-eCCCeEEEEeCCCc-
Q 024372          145 SGSIRTVAWLHSDQTILSSCTD---SGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYIT-T-ADGSSVKFWDANHF-  218 (268)
Q Consensus       145 ~~~v~~~~~~~~~~~~~~~~~~---d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~-~~~~~v~~wd~~~~-  218 (268)
                      ....+.+...+++...+.+...   .+.-.+|.+..++...........+.++++|+++.+. + +..+.|..+++... 
T Consensus       102 ~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~  181 (295)
T d2ghsa1         102 GNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDART  181 (295)
T ss_dssp             TEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTT
T ss_pred             cccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeecccc
Confidence            2245667777776544443322   1244566666676555544445578999999998654 3 34578888876421 


Q ss_pred             -ee---eeEE-eC---CCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEeec
Q 024372          219 -GL---VKGY-NM---PCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       219 -~~---~~~~-~~---~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~~  266 (268)
                       ..   ...+ ..   ...+...++.. +|.+.++.-..+.|..||- .|+++...
T Consensus       182 ~~~~~~~~~~~~~~~~~g~pdG~~vD~-~GnlWva~~~~g~V~~~dp-~G~~~~~i  235 (295)
T d2ghsa1         182 GLPTGKAEVFIDSTGIKGGMDGSVCDA-EGHIWNARWGEGAVDRYDT-DGNHIARY  235 (295)
T ss_dssp             CCBSSCCEEEEECTTSSSEEEEEEECT-TSCEEEEEETTTEEEEECT-TCCEEEEE
T ss_pred             cccccceEEEeccCcccccccceEEcC-CCCEEeeeeCCCceEEecC-CCcEeeEe
Confidence             11   1111 11   11234455555 6887777666778999995 68877653

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.66  E-value=0.0087  Score=51.36  Aligned_cols=56  Identities=11%  Similarity=0.039  Sum_probs=39.8

Q ss_pred             eEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEee
Q 024372          209 SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       209 ~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~  265 (268)
                      .|.-+|+.+++.+-.+.......+..+.- .+.++++|+.|+.++-+|.+|||++=.
T Consensus       445 ~l~AiD~~TG~~~W~~~~~~~~~~g~l~T-agglVf~G~~dg~l~A~Da~tGe~lW~  500 (571)
T d2ad6a1         445 QIRAFDLTTGKAKWTKWEKFAAWGGTLYT-KGGLVWYATLDGYLKALDNKDGKELWN  500 (571)
T ss_dssp             EEEEECTTTCCEEEEEEESSCCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             cEEEeccCCCceeeEcCCCCCCCcceeEe-cCCEEEEECCCCeEEEEECCCCcEEEE
Confidence            57778888887776665544333333332 356777899999999999999999854

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.39  E-value=0.031  Score=47.68  Aligned_cols=56  Identities=18%  Similarity=0.285  Sum_probs=42.4

Q ss_pred             eEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEee
Q 024372          209 SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       209 ~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~  265 (268)
                      .+.-||+.+++.+-.+..........+.- .+.++.+|+.|+.++-+|.+|||++=.
T Consensus       439 ~l~A~D~~tGk~~W~~~~~~~~~gg~l~T-agglVF~G~~dg~l~A~Da~tGe~LW~  494 (560)
T d1kv9a2         439 ALLAWDPVKQKAAWKVPYPTHWNGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQ  494 (560)
T ss_dssp             EEEEEETTTTEEEEEEEESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             ceEEEeCCCCeEeeeccCCCCCCCceeEE-CCCEEEEECCCCcEEEEECCCCcEeEE
Confidence            57788999888887776655444444433 366777899999999999999999854

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.33  E-value=0.023  Score=48.88  Aligned_cols=56  Identities=14%  Similarity=0.107  Sum_probs=39.5

Q ss_pred             eEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEee
Q 024372          209 SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       209 ~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~  265 (268)
                      .|.-||+.+++.+-.+..........+.. .|.++.+|+.|+.++-+|.+|||++=.
T Consensus       454 ~l~A~D~~TG~~~W~~~~~~~~~gg~lsT-agglVF~G~~Dg~l~A~Da~TGe~LW~  509 (596)
T d1w6sa_         454 QIKAYNAITGDYKWEKMERFAVWGGTMAT-AGDLVFYGTLDGYLKARDSDTGDLLWK  509 (596)
T ss_dssp             EEEEECTTTCCEEEEEEESSCCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             eEEEEeCCCCceecccCCCCCCccceeEe-cCCEEEEECCCCeEEEEECCCCcEeeE
Confidence            57777887777765554443333333333 366777899999999999999999854

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.25  E-value=0.047  Score=46.64  Aligned_cols=57  Identities=18%  Similarity=0.219  Sum_probs=41.5

Q ss_pred             eEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEeec
Q 024372          209 SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       209 ~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~~  266 (268)
                      .+.-||+.+++.+-.+..........+.- .+.++.+|+.|+.++.+|.+|||++-.+
T Consensus       458 ~l~AiD~~tGk~~W~~~~~~p~~gg~lst-agglVF~G~~dg~l~A~Da~TGe~LW~~  514 (573)
T d1kb0a2         458 RLLAWDPVAQKAAWSVEHVSPWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEA  514 (573)
T ss_dssp             EEEEEETTTTEEEEEEEESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cEEEeCCCCCceEeeecCCCCCCCceEEE-cCCEEEEECCCCeEEEEECCCCcEeEEE
Confidence            46778888888776666544433333333 4777888999999999999999998553

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.24  E-value=0.025  Score=43.25  Aligned_cols=207  Identities=9%  Similarity=-0.056  Sum_probs=122.0

Q ss_pred             ecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEE-EEeeCCCcEEEEeCCC
Q 024372           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFS-ASGSADFTAKLWDALT   92 (268)
Q Consensus        14 ~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l-~s~s~D~~v~iw~~~~   92 (268)
                      .+.+.+.+++|.+.  ++....+-..++.|+..+...++....+..-...+..+++..-+..| .+-...+.|.+.++..
T Consensus        33 ~~~~~~~~ld~D~~--~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg  110 (263)
T d1npea_          33 IPAKVIIGLAFDCV--DKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG  110 (263)
T ss_dssp             EEEEEEEEEEEETT--TTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             cCCCcEEEEEEEeC--CCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCC
Confidence            34456778999862  33344444555667666665544433343333567888998655554 4555678899999876


Q ss_pred             CCeeeeecc-CCeEEEEEECCCCCEEEEeeC-CCe--EEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCC
Q 024372           93 GDEKHSFEH-KHIVRACAFSEDTHLLLTGGF-EKI--LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG  168 (268)
Q Consensus        93 ~~~~~~~~~-~~~v~~v~~~~~~~~l~s~~~-d~~--i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~  168 (268)
                      ......+.. ......++++|....++-... .+.  |..-++.... ..............+++.+.++.+..+-...+
T Consensus       111 ~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~-~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~  189 (263)
T d1npea_         111 TQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTH  189 (263)
T ss_dssp             CSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             ceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCC-ceeeeeecccccceEEEeecCcEEEEEeCCCC
Confidence            554333322 245778889886665554322 223  4434554322 12222222345578888887777767655668


Q ss_pred             eEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEE
Q 024372          169 GVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGY  224 (268)
Q Consensus       169 ~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~  224 (268)
                      .|..-|+........+.......++++.. +.+..+ ...+.|...|..+.+.+..+
T Consensus       190 ~I~~~~~~g~~~~~v~~~~~~P~~lav~~-~~lYwtd~~~~~I~~~~~~~g~~~~~~  245 (263)
T d1npea_         190 RAECLNPAQPGRRKVLEGLQYPFAVTSYG-KNLYYTDWKTNSVIAMDLAISKEMDTF  245 (263)
T ss_dssp             EEEEEETTEEEEEEEEECCCSEEEEEEET-TEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEEEEECCCCCeEEEECCCCCcEEEEEEC-CEEEEEECCCCEEEEEECCCCccceEE
Confidence            89999987554433344333356788763 333334 35678888898877766655

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.12  E-value=0.033  Score=42.51  Aligned_cols=205  Identities=5%  Similarity=-0.078  Sum_probs=125.7

Q ss_pred             CccCcEEEEEecCCCcEE-EEeeCCCcEEEEeCCCCCeeeeecc-CCeEEEEEECCCCCEEE-EeeCCCeEEEEECCCCC
Q 024372           59 GHKGAVWSCCLDANALFS-ASGSADFTAKLWDALTGDEKHSFEH-KHIVRACAFSEDTHLLL-TGGFEKILRIFDLNRPD  135 (268)
Q Consensus        59 ~h~~~V~~~~~~~~~~~l-~s~s~D~~v~iw~~~~~~~~~~~~~-~~~v~~v~~~~~~~~l~-s~~~d~~i~~~d~~~~~  135 (268)
                      .+...+..++|.+....+ .+-..++.|+..++........+.. ...+..+++..-+..|+ +-...+.|.+.++....
T Consensus        33 ~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~  112 (263)
T d1npea_          33 IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ  112 (263)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             cCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCce
Confidence            344457778888766555 4445678888888865554443332 24577888887555555 44566789999886432


Q ss_pred             CCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEE--eCCCCceEEeec-CCCCEEEEEECCCCcEE-EE-eCCCeE
Q 024372          136 APPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLW--DARSGKIVQTLE-TKSPVTSAEVSRDGRYI-TT-ADGSSV  210 (268)
Q Consensus       136 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iw--d~~~~~~~~~~~-~~~~v~~~~~s~~g~~l-~~-~~~~~v  210 (268)
                      . .............++..|..+.++.+-...+.-+|+  ++.......... .-.....+++.+.++.| .+ ...+.|
T Consensus       113 ~-~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I  191 (263)
T d1npea_         113 R-RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRA  191 (263)
T ss_dssp             C-EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             E-EEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEE
Confidence            2 122222234567888888888877664433344455  454333222222 22456899998876555 34 345789


Q ss_pred             EEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEeec
Q 024372          211 KFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAIT  266 (268)
Q Consensus       211 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~~  266 (268)
                      ...|+..............+..+++.  .+.++++=.....|...|..+|+.+.++
T Consensus       192 ~~~~~~g~~~~~v~~~~~~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~  245 (263)
T d1npea_         192 ECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTF  245 (263)
T ss_dssp             EEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEEECCCCCeEEEECCCCCcEEEEEE--CCEEEEEECCCCEEEEEECCCCccceEE
Confidence            88898654433333333334555554  4677777667778999999889887764

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.78  E-value=0.071  Score=43.41  Aligned_cols=184  Identities=12%  Similarity=0.136  Sum_probs=106.3

Q ss_pred             CCcEE-EEeeCCCcEEEEeCCCCCeeee--eccCCeEEEEEECC--CCCEEEEeeCCC------------------eEEE
Q 024372           72 NALFS-ASGSADFTAKLWDALTGDEKHS--FEHKHIVRACAFSE--DTHLLLTGGFEK------------------ILRI  128 (268)
Q Consensus        72 ~~~~l-~s~s~D~~v~iw~~~~~~~~~~--~~~~~~v~~v~~~~--~~~~l~s~~~d~------------------~i~~  128 (268)
                      ||+++ +.-..+..|-+-|+.+.++...  ++....+..+...+  +-.+++.++...                  .+..
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~  177 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  177 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEE
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEE
Confidence            77776 5566788898999988887554  34444556555544  444555544422                  2455


Q ss_pred             EECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCC-------------------------------------CeEE
Q 024372          129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS-------------------------------------GGVR  171 (268)
Q Consensus       129 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d-------------------------------------~~i~  171 (268)
                      .|..+.+...+..  -.+....+.++++++++++++-..                                     +.+.
T Consensus       178 ID~~tm~V~~QV~--V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~  255 (459)
T d1fwxa2         178 VDADKWEVAWQVL--VSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  255 (459)
T ss_dssp             EETTTTEEEEEEE--ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             EecCCceEEEEee--eCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCce
Confidence            6765443222221  122344567788888888876321                                     2234


Q ss_pred             EEeCCCC---ceEEeecCCCCEEEEEECCCCcEEEEeC--CCeEEEEeCCCceee------------eEEeCCCCceeeE
Q 024372          172 LWDARSG---KIVQTLETKSPVTSAEVSRDGRYITTAD--GSSVKFWDANHFGLV------------KGYNMPCNTESAS  234 (268)
Q Consensus       172 iwd~~~~---~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~v~~wd~~~~~~~------------~~~~~~~~~~~~~  234 (268)
                      +-|.++.   ..+..+........+.++|||+++.++.  +.++.+.|+++...+            ......-++.--.
T Consensus       256 VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~  335 (459)
T d1fwxa2         256 VVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTA  335 (459)
T ss_dssp             EEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEE
T ss_pred             eecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccc
Confidence            5555431   2233333223355789999999988764  689999998653211            0001111222234


Q ss_pred             EcCCCCCEEEeccCCCeEEEEECC
Q 024372          235 LEPKLGNIFIAGGEDMWVHVFDFH  258 (268)
Q Consensus       235 ~~~~~~~~~~~gs~d~~i~~wd~~  258 (268)
                      +.. .|.-+.+---|+.|--|++.
T Consensus       336 fd~-~g~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         336 FDG-RGNAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             ECT-TSEEEEEETTTTEEEEEEHH
T ss_pred             cCC-CceEEEEeeccceEEEEecc
Confidence            444 46666677889999999974

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.65  E-value=0.12  Score=42.00  Aligned_cols=195  Identities=11%  Similarity=0.034  Sum_probs=121.2

Q ss_pred             eEEEecCCCCCcEEEEEe-CCCCeEEeeCCCCCeEEEeeC-ccCcEEEEEe--cCCCcEEEEeeCCC-------------
Q 024372           21 DLFYSPITPDGFFLVSAS-KDSSPMLRNGETGDWIGTFEG-HKGAVWSCCL--DANALFSASGSADF-------------   83 (268)
Q Consensus        21 ~~~f~~~~~dg~~l~s~s-~d~~i~iw~~~~~~~~~~~~~-h~~~V~~~~~--~~~~~~l~s~s~D~-------------   83 (268)
                      .+.|-.-++||+||+... .+..|-+-|+.+.+..+.+.- ....+..++.  .|+..|++..+.+.             
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            566654456899998876 455666778988887654432 2234555554  35556766655532             


Q ss_pred             -----cEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCe---------------------------------
Q 024372           84 -----TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKI---------------------------------  125 (268)
Q Consensus        84 -----~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~---------------------------------  125 (268)
                           .+-+.|..+.+....+........+.++++|+++++.+.+..                                 
T Consensus       169 ~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~  248 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDY  248 (459)
T ss_dssp             G-EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCS
T ss_pred             hhcceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCc
Confidence                 255678888777777665556667899999999998875421                                 


Q ss_pred             -----EEEEECCCC--CCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCce------------EEeecC
Q 024372          126 -----LRIFDLNRP--DAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI------------VQTLET  186 (268)
Q Consensus       126 -----i~~~d~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~------------~~~~~~  186 (268)
                           +.+-|.+..  ......+.-.+ ....+..+|++.++++++.-+.++.+.|+++-..            ..+.+.
T Consensus       249 ~eingV~VVD~~~~~~~~v~~yIPVpK-sPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~el  327 (459)
T d1fwxa2         249 QELNGVKVVDGRKEASSLFTRYIPIAN-NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL  327 (459)
T ss_dssp             EEETTEEEEECSGG--CSSEEEEEEES-SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBC
T ss_pred             EEeCCceeecccccCCcceeEEEecCC-CCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeeccc
Confidence                 233333221  01111111111 1234677899999999999999999999974321            122222


Q ss_pred             CCCEEEEEECCCCcEEEEe-CCCeEEEEeCC
Q 024372          187 KSPVTSAEVSRDGRYITTA-DGSSVKFWDAN  216 (268)
Q Consensus       187 ~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~  216 (268)
                      .-....-+|...|...++- =|..|.-|++.
T Consensus       328 glgPLht~fd~~g~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         328 GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             CSCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred             CcCccccccCCCceEEEEeeccceEEEEecc
Confidence            2345677888888544443 47789999974

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.53  E-value=0.064  Score=42.64  Aligned_cols=153  Identities=14%  Similarity=0.149  Sum_probs=84.3

Q ss_pred             ECCCCCEEEEeeCCC-----------eEEEEECCCCCCCCe-E-ecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCC
Q 024372          110 FSEDTHLLLTGGFEK-----------ILRIFDLNRPDAPPR-E-VGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR  176 (268)
Q Consensus       110 ~~~~~~~l~s~~~d~-----------~i~~~d~~~~~~~~~-~-~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~  176 (268)
                      ...++++++.|+.+.           .+.+||+.+...... . ...+.......++.+++..++.++.+.+.+.+||..
T Consensus        27 ~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~  106 (387)
T d1k3ia3          27 EPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSS  106 (387)
T ss_dssp             ETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGG
T ss_pred             EeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCc
Confidence            345677777666421           256899876543221 1 111111122345566665444444444689999998


Q ss_pred             CCceEEeec--CCCCEEEEEECCCCcEEEEeC--C-----CeEEEEeCCCceeeeEEeCC--------------CCceee
Q 024372          177 SGKIVQTLE--TKSPVTSAEVSRDGRYITTAD--G-----SSVKFWDANHFGLVKGYNMP--------------CNTESA  233 (268)
Q Consensus       177 ~~~~~~~~~--~~~~v~~~~~s~~g~~l~~~~--~-----~~v~~wd~~~~~~~~~~~~~--------------~~~~~~  233 (268)
                      +..-...-.  ....-..++..+||++++.+.  +     ..+.+||..+..-...-...              ......
T Consensus       107 ~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (387)
T d1k3ia3         107 SDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAW  186 (387)
T ss_dssp             GTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCC
T ss_pred             cCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeE
Confidence            876543222  222245678888998877643  1     36899998765322111100              001112


Q ss_pred             EEcCCCCCEEEeccCCCeEEEEECCCCcE
Q 024372          234 SLEPKLGNIFIAGGEDMWVHVFDFHTGEQ  262 (268)
Q Consensus       234 ~~~~~~~~~~~~gs~d~~i~~wd~~~g~~  262 (268)
                      .+...+|+.++.++.+..+++++..+...
T Consensus       187 ~~~~~~G~~~~~g~~~~~~~~~~~~~~~~  215 (387)
T d1k3ia3         187 LFGWKKGSVFQAGPSTAMNWYYTSGSGDV  215 (387)
T ss_dssp             EEECGGGCEEECCSSSEEEEEECSTTCEE
T ss_pred             EEEeCCCCEEEecCcCCcEEecCcccCcE
Confidence            22233578888888888888888776554

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.23  E-value=0.19  Score=39.63  Aligned_cols=153  Identities=11%  Similarity=0.101  Sum_probs=79.3

Q ss_pred             EEecCCCcEEEEeeCCC-----------cEEEEeCCCCCeee----eeccCCeEEEEEECCCCCEEEEeeCC-CeEEEEE
Q 024372           67 CCLDANALFSASGSADF-----------TAKLWDALTGDEKH----SFEHKHIVRACAFSEDTHLLLTGGFE-KILRIFD  130 (268)
Q Consensus        67 ~~~~~~~~~l~s~s~D~-----------~v~iw~~~~~~~~~----~~~~~~~v~~v~~~~~~~~l~s~~~d-~~i~~~d  130 (268)
                      .....++++++-|+.+.           .+.+||..++.-..    ...+........+.+++++++.|+.+ ..+.+||
T Consensus        25 a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd  104 (387)
T d1k3ia3          25 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYD  104 (387)
T ss_dssp             EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEE
T ss_pred             EEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEec
Confidence            33455666666665321           36789998765322    11233333456788999999988755 6789999


Q ss_pred             CCCCCCCCe-EecCCcccEEEEEEeCCCCcEEEEeeCC-----CeEEEEeCCCCceEEeecCC---------------CC
Q 024372          131 LNRPDAPPR-EVGNSSGSIRTVAWLHSDQTILSSCTDS-----GGVRLWDARSGKIVQTLETK---------------SP  189 (268)
Q Consensus       131 ~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~d-----~~i~iwd~~~~~~~~~~~~~---------------~~  189 (268)
                      ..+...... ...... .-...+..+++..++.++...     +.+.+||+.+.+=...-...               ..
T Consensus       105 ~~~~~w~~~~~~~~~r-~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~  183 (387)
T d1k3ia3         105 SSSDSWIPGPDMQVAR-GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDN  183 (387)
T ss_dssp             GGGTEEEECCCCSSCC-SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTC
T ss_pred             CccCcccccccccccc-cccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccc
Confidence            764321100 000111 112334455555445444322     35899999876532211100               00


Q ss_pred             EEEEEECCCCcEEEEe-CCCeEEEEeCCCcee
Q 024372          190 VTSAEVSRDGRYITTA-DGSSVKFWDANHFGL  220 (268)
Q Consensus       190 v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~  220 (268)
                      -..+..-++|+.+..+ ....+.++|......
T Consensus       184 ~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~  215 (387)
T d1k3ia3         184 HAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV  215 (387)
T ss_dssp             SCCEEECGGGCEEECCSSSEEEEEECSTTCEE
T ss_pred             eeEEEEeCCCCEEEecCcCCcEEecCcccCcE
Confidence            1123334566665543 345667777766543

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=94.74  E-value=0.13  Score=43.55  Aligned_cols=59  Identities=10%  Similarity=0.099  Sum_probs=40.3

Q ss_pred             CcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEe
Q 024372           83 FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV  141 (268)
Q Consensus        83 ~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~  141 (268)
                      +.+.-||+.+++.+-......+...-.+...+.+++.|+.|+.++-+|.++++.+-+..
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~  496 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFE  496 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEE
Confidence            45677888888877766554443322223346678889999999999999887654443

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=94.71  E-value=0.21  Score=42.45  Aligned_cols=57  Identities=12%  Similarity=0.174  Sum_probs=36.5

Q ss_pred             cEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeE
Q 024372           84 TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE  140 (268)
Q Consensus        84 ~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~  140 (268)
                      .+.-||+.+++.+-......+...=.....+.++++|+.|+.++.||.++++.+-+.
T Consensus       458 ~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~  514 (573)
T d1kb0a2         458 RLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEA  514 (573)
T ss_dssp             EEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEE
Confidence            455666666666655544433221112335678888999999999999988765443

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.44  E-value=0.2  Score=42.54  Aligned_cols=59  Identities=14%  Similarity=0.044  Sum_probs=37.1

Q ss_pred             CcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEe
Q 024372           83 FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV  141 (268)
Q Consensus        83 ~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~  141 (268)
                      |.+.-+|+.+++.+-......+..+-.....+.++++|+.|+.++-+|.++++.+-+..
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~  502 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK  502 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEE
Confidence            35666777777766655443332211112235577789999999999998887654443

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.84  E-value=0.32  Score=41.27  Aligned_cols=77  Identities=13%  Similarity=0.157  Sum_probs=47.8

Q ss_pred             CcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCc
Q 024372           83 FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQT  159 (268)
Q Consensus        83 ~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  159 (268)
                      |.+.-+|+.+++.+-......++..-..+..+.++++|+.|+.++-+|.++++.+-+........-.-+.|..++..
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~q  542 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ  542 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             CeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence            45777788888877766655444322233456788889999999999999987665543322111112455555643

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=93.66  E-value=1.2  Score=34.78  Aligned_cols=180  Identities=12%  Similarity=0.113  Sum_probs=88.0

Q ss_pred             EEEecCCCcEEEEee------------CCCcEEEEeCCCCCeee-eec----cC---C-eEEEEEE--CCCCC-EEEEe-
Q 024372           66 SCCLDANALFSASGS------------ADFTAKLWDALTGDEKH-SFE----HK---H-IVRACAF--SEDTH-LLLTG-  120 (268)
Q Consensus        66 ~~~~~~~~~~l~s~s------------~D~~v~iw~~~~~~~~~-~~~----~~---~-~v~~v~~--~~~~~-~l~s~-  120 (268)
                      .+...|++..+.+++            ..|.+.++|+....... .+.    ..   . .-..+.+  .++++ .|++. 
T Consensus        39 Di~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvn  118 (340)
T d1v04a_          39 DLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVN  118 (340)
T ss_dssp             EEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEE
T ss_pred             eEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEe
Confidence            345567776554432            13788888887654311 111    00   0 1122222  44554 33333 


Q ss_pred             --eCCCeEEEEECCCCCCCCe---Eec-CCcccEEEEEEeCCCCcEEEEe---eC------------CCeEEEEeCCCCc
Q 024372          121 --GFEKILRIFDLNRPDAPPR---EVG-NSSGSIRTVAWLHSDQTILSSC---TD------------SGGVRLWDARSGK  179 (268)
Q Consensus       121 --~~d~~i~~~d~~~~~~~~~---~~~-~~~~~v~~~~~~~~~~~~~~~~---~~------------d~~i~iwd~~~~~  179 (268)
                        .....|-+|++........   ... ......+.++...++.. +++-   ..            -++-.+|....++
T Consensus       119 H~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~f-y~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~  197 (340)
T d1v04a_         119 HPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHF-YATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND  197 (340)
T ss_dssp             CSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEE-EEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSC
T ss_pred             ccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCE-EEecCccCcChhhhhhhHhhcCCceeEEEEcCCc
Confidence              2456788887654322111   111 11233566666666653 3331   00            0123333333333


Q ss_pred             eEEeecCCCCEEEEEECCCCcEEEEe--CCCeEEEEeCCCcee---eeEEeCCCCceeeEEcCCCCCEEEec
Q 024372          180 IVQTLETKSPVTSAEVSRDGRYITTA--DGSSVKFWDANHFGL---VKGYNMPCNTESASLEPKLGNIFIAG  246 (268)
Q Consensus       180 ~~~~~~~~~~v~~~~~s~~g~~l~~~--~~~~v~~wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g  246 (268)
                      .......-...+.++++||+++|..+  ..+.|+.|++.....   ......+..+.-+.+.+..|.+.+++
T Consensus       198 ~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         198 VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             eEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence            32223333568999999999876543  467899888864322   22334444444555555445555443

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=92.42  E-value=0.68  Score=39.33  Aligned_cols=59  Identities=20%  Similarity=0.193  Sum_probs=39.5

Q ss_pred             CcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEe
Q 024372           83 FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV  141 (268)
Q Consensus        83 ~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~  141 (268)
                      |.+.-||+.+++.+-...+..+...-.++..+.+++.|+.|+.++-+|.++++.+-+..
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~  511 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFK  511 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ceEEEEeCCCCceecccCCCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEE
Confidence            45677777777776665544433322223356778889999999999999887654443

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.96  E-value=1.8  Score=32.34  Aligned_cols=176  Identities=10%  Similarity=0.016  Sum_probs=104.7

Q ss_pred             cEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEee-CCCeEEEEECCCCC--CCCeE-ecCCcccEEEEEEeCCCCc
Q 024372           84 TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGG-FEKILRIFDLNRPD--APPRE-VGNSSGSIRTVAWLHSDQT  159 (268)
Q Consensus        84 ~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~-~d~~i~~~d~~~~~--~~~~~-~~~~~~~v~~~~~~~~~~~  159 (268)
                      .|+..++.+.+..........+..+.|++..+.++-.. ..+.|...+++...  ..... ..........+++.+.+++
T Consensus        11 ~I~~~~l~~~~~~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~   90 (266)
T d1ijqa1          11 EVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN   90 (266)
T ss_dssp             SEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE
T ss_pred             eEEEEECCCCcceeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccce
Confidence            47777776655444444445567889988777666543 55667766654321  11121 2222234556787777778


Q ss_pred             EEEEeeCCCeEEEEeCCCCceEEeec-CCCCEEEEEECCCCcEE-EEe--CCCeEEEEeCCCceeeeEEeCC-CCceeeE
Q 024372          160 ILSSCTDSGGVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYI-TTA--DGSSVKFWDANHFGLVKGYNMP-CNTESAS  234 (268)
Q Consensus       160 ~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~g~~l-~~~--~~~~v~~wd~~~~~~~~~~~~~-~~~~~~~  234 (268)
                      +..+....+.|.+.++........+. .......++++|...++ .+.  ....|.-.++............ ..+..++
T Consensus        91 lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~  170 (266)
T d1ijqa1          91 IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGIT  170 (266)
T ss_dssp             EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEE
T ss_pred             EEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEE
Confidence            87777777899999998665444333 33457899999865444 343  2345666666543333222221 2345677


Q ss_pred             EcCCCCCEEEeccCCCeEEEEECCC
Q 024372          235 LEPKLGNIFIAGGEDMWVHVFDFHT  259 (268)
Q Consensus       235 ~~~~~~~~~~~gs~d~~i~~wd~~~  259 (268)
                      +.+..++++.+-+..+.|...|...
T Consensus       171 iD~~~~~lYw~d~~~~~I~~~~~dG  195 (266)
T d1ijqa1         171 LDLLSGRLYWVDSKLHSISSIDVNG  195 (266)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTS
T ss_pred             eeccccEEEEecCCcCEEEEEECCC
Confidence            7765566677767777888888753

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.36  E-value=2.1  Score=31.93  Aligned_cols=204  Identities=13%  Similarity=-0.077  Sum_probs=109.4

Q ss_pred             cCCCeeeEEEecCCCCCcEEEEE-eCCCCeEEeeCCC----CCeEEEeeCccCcEEEEEecCCCcEE-EEeeCCCcEEEE
Q 024372           15 HSRPVVDLFYSPITPDGFFLVSA-SKDSSPMLRNGET----GDWIGTFEGHKGAVWSCCLDANALFS-ASGSADFTAKLW   88 (268)
Q Consensus        15 h~~~v~~~~f~~~~~dg~~l~s~-s~d~~i~iw~~~~----~~~~~~~~~h~~~V~~~~~~~~~~~l-~s~s~D~~v~iw   88 (268)
                      ....+.+++|++   .++.|.=+ ...+.|.-.+...    ......+......+..+++.+.+..+ .+-...+.|.+.
T Consensus        28 ~~~~~~~id~d~---~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~  104 (266)
T d1ijqa1          28 NLRNVVALDTEV---ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA  104 (266)
T ss_dssp             SCSSEEEEEEET---TTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CCCceEEEEEEe---CCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeE
Confidence            445566788875   23334333 3344443333321    11111222223445678887655444 455667889999


Q ss_pred             eCCCCCeeeeec-cCCeEEEEEECCCCCEEEEee--CCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEee
Q 024372           89 DALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGG--FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT  165 (268)
Q Consensus        89 ~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~--~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  165 (268)
                      ++.......... .......++++|....++-..  ..+.|...++.... ..............+++.+.+..+..+-.
T Consensus       105 ~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~-~~~l~~~~~~~p~gl~iD~~~~~lYw~d~  183 (266)
T d1ijqa1         105 DTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDLLSGRLYWVDS  183 (266)
T ss_dssp             ETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEECSSCSCEEEEEEETTTTEEEEEET
T ss_pred             ecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCc-eecccccccceeeEEEeeccccEEEEecC
Confidence            987665544333 334567788888554444433  33456666664321 11222222345677888887777777766


Q ss_pred             CCCeEEEEeCCCCceEEeecC---CCCEEEEEECCCCcEEEEeCCCeEEEEeCCCceeee
Q 024372          166 DSGGVRLWDARSGKIVQTLET---KSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVK  222 (268)
Q Consensus       166 ~d~~i~iwd~~~~~~~~~~~~---~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~  222 (268)
                      ..+.|...|+...........   ......+++..+.-|++-..++.|...+..++....
T Consensus       184 ~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~~~ly~td~~~~~I~~~~~~~g~~~~  243 (266)
T d1ijqa1         184 KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVN  243 (266)
T ss_dssp             TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCE
T ss_pred             CcCEEEEEECCCCCEEEEEeCCCcccccEEEEEECCEEEEEECCCCeEEEEECCCCcceE
Confidence            668898889865443322221   123567777744333333355677777766654443

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.81  E-value=2.3  Score=31.42  Aligned_cols=91  Identities=15%  Similarity=0.112  Sum_probs=44.3

Q ss_pred             eEEEEeCCCCceEEeecC--CCCEEEEEECCCCcEEEEeCC-----CeEEEEeCCCceeeeEEeCCCCc--eeeEEcCCC
Q 024372          169 GVRLWDARSGKIVQTLET--KSPVTSAEVSRDGRYITTADG-----SSVKFWDANHFGLVKGYNMPCNT--ESASLEPKL  239 (268)
Q Consensus       169 ~i~iwd~~~~~~~~~~~~--~~~v~~~~~s~~g~~l~~~~~-----~~v~~wd~~~~~~~~~~~~~~~~--~~~~~~~~~  239 (268)
                      .+..||..+.+-...-..  .....++....+..++..+.+     .....+|.........-..+...  ...+. . +
T Consensus       165 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~-~  242 (288)
T d1zgka1         165 SAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV-H-Q  242 (288)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-E-T
T ss_pred             eEEEeeccccccccccccccccccccccceeeeEEEecCccccccccceeeeeecceeeecccCccCcccceEEEE-E-C
Confidence            477888876654332111  111123333333333343322     24567777654332211222221  12222 2 4


Q ss_pred             CCEEEeccCCC-----eEEEEECCCCc
Q 024372          240 GNIFIAGGEDM-----WVHVFDFHTGE  261 (268)
Q Consensus       240 ~~~~~~gs~d~-----~i~~wd~~~g~  261 (268)
                      +++++.||.++     .|.+||..+++
T Consensus       243 ~~l~v~GG~~~~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         243 GRIYVLGGYDGHTFLDSVECYDPDTDT  269 (288)
T ss_dssp             TEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CEEEEEecCCCCeecceEEEEECCCCE
Confidence            88888887543     38899988665

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.64  E-value=3.3  Score=33.05  Aligned_cols=231  Identities=11%  Similarity=0.044  Sum_probs=114.6

Q ss_pred             CCCCcEEEEE-eCC----CCeEEeeCCCCCeEE-EeeCccCcEEEEEecCCCcEEEEeeC----------------CCcE
Q 024372           28 TPDGFFLVSA-SKD----SSPMLRNGETGDWIG-TFEGHKGAVWSCCLDANALFSASGSA----------------DFTA   85 (268)
Q Consensus        28 ~~dg~~l~s~-s~d----~~i~iw~~~~~~~~~-~~~~h~~~V~~~~~~~~~~~l~s~s~----------------D~~v   85 (268)
                      +|||++||-+ +.+    .++++.|+.+|+.+. .+..  .....++|.+++..|.....                ...|
T Consensus       133 Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v  210 (430)
T d1qfma1         133 SEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKL  210 (430)
T ss_dssp             CTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEE
T ss_pred             cCCCCEEEEEeccccCchheeEEeccCcceeccccccc--ccccceEEcCCCCEEEEEEeccccCcccccccccCCcceE
Confidence            5799998854 223    367889999998764 3321  11235679999886654322                2357


Q ss_pred             EEEeCCCCCee--eeec---cCCeEEEEEECCCCCEEEEee---CCCeEEEE--ECCCCCCCC-------eEecCCcccE
Q 024372           86 KLWDALTGDEK--HSFE---HKHIVRACAFSEDTHLLLTGG---FEKILRIF--DLNRPDAPP-------REVGNSSGSI  148 (268)
Q Consensus        86 ~iw~~~~~~~~--~~~~---~~~~v~~v~~~~~~~~l~s~~---~d~~i~~~--d~~~~~~~~-------~~~~~~~~~v  148 (268)
                      +.|.+.+....  ..+.   ....+..+..+.+++.++...   .+....+|  |+.......       ..........
T Consensus       211 ~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  290 (430)
T d1qfma1         211 YYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEY  290 (430)
T ss_dssp             EEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCE
T ss_pred             EEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeecccccce
Confidence            77888776532  2222   223466677899998776422   23333444  543221111       1111222222


Q ss_pred             EEEEEeCCCCcEEEEe--eCCCeEEEEeCCCCce--EEe-ecCC-CCEEEEEECCCCcEEE-Ee-CC--CeEEEEeCCCc
Q 024372          149 RTVAWLHSDQTILSSC--TDSGGVRLWDARSGKI--VQT-LETK-SPVTSAEVSRDGRYIT-TA-DG--SSVKFWDANHF  218 (268)
Q Consensus       149 ~~~~~~~~~~~~~~~~--~~d~~i~iwd~~~~~~--~~~-~~~~-~~v~~~~~s~~g~~l~-~~-~~--~~v~~wd~~~~  218 (268)
                      .-+. ...+..++.+.  ...+.|...++.....  ... +..+ ..+..-.++..+.+|+ .- .+  ..|+++++...
T Consensus       291 ~~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~  369 (430)
T d1qfma1         291 DYVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATG  369 (430)
T ss_dssp             EEEE-EETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTC
T ss_pred             EEEe-cCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEEEEECCCC
Confidence            2222 12222233332  1124566666654322  122 2322 2344444444444443 32 33  46889999876


Q ss_pred             eeeeEEeCCCCcee-eEEcCCCCCEEEec-cC--CCeEEEEECCCCc
Q 024372          219 GLVKGYNMPCNTES-ASLEPKLGNIFIAG-GE--DMWVHVFDFHTGE  261 (268)
Q Consensus       219 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~g-s~--d~~i~~wd~~~g~  261 (268)
                      ........+..... ....+.+..++++- |-  =..++.||+++|+
T Consensus       370 ~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~  416 (430)
T d1qfma1         370 ALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (430)
T ss_dssp             CEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             cEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence            55444333322222 12223334444443 32  2579999999886

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.90  E-value=4.7  Score=33.68  Aligned_cols=57  Identities=19%  Similarity=0.211  Sum_probs=41.0

Q ss_pred             CeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEee
Q 024372          208 SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       208 ~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~  265 (268)
                      +.|.-+|+.+++.+-.+..+.......+.. .+.++.+|+.|+.++-+|.+|||++=.
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lst-agglVF~Gt~dg~l~A~Da~TGe~LW~  522 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWK  522 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CeEEEEcCCCCcEEeecCCCCCCccceeEE-cCCeEEEeCCCCeEEEEECCCCcEeEE
Confidence            357778888887776666554444333333 366777899999999999999999854

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.40  E-value=4.2  Score=32.39  Aligned_cols=101  Identities=12%  Similarity=0.043  Sum_probs=56.5

Q ss_pred             EEEEEecCCCcEEE-EeeC----CCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCC---------------
Q 024372           64 VWSCCLDANALFSA-SGSA----DFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFE---------------  123 (268)
Q Consensus        64 V~~~~~~~~~~~l~-s~s~----D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d---------------  123 (268)
                      +...+++|+++++| +-+.    -.++++.|+.+++.+...-.......+.|.++++.|+-...+               
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~  206 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNL  206 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCC
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccccccCC
Confidence            44567899998876 3222    347999999998865422111112457899999877644322               


Q ss_pred             -CeEEEEECCCCCCCCeEe-cCCc--ccEEEEEEeCCCCcEEEEe
Q 024372          124 -KILRIFDLNRPDAPPREV-GNSS--GSIRTVAWLHSDQTILSSC  164 (268)
Q Consensus       124 -~~i~~~d~~~~~~~~~~~-~~~~--~~v~~~~~~~~~~~~~~~~  164 (268)
                       ..+..+.+.++...-... ....  ..+..+..++++..+++..
T Consensus       207 ~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~  251 (430)
T d1qfma1         207 HQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSI  251 (430)
T ss_dssp             CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEE
T ss_pred             cceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEe
Confidence             246666665542221222 1111  2344455566766665443

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=88.56  E-value=4.5  Score=31.58  Aligned_cols=192  Identities=7%  Similarity=0.130  Sum_probs=98.7

Q ss_pred             CCcEEEEeeCCCcEEEEeCCCCCeeeeeccCCeEEEE------EECCCCCEEEEee-CC---CeEEEEECCCCCCCCeEe
Q 024372           72 NALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRAC------AFSEDTHLLLTGG-FE---KILRIFDLNRPDAPPREV  141 (268)
Q Consensus        72 ~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v------~~~~~~~~l~s~~-~d---~~i~~~d~~~~~~~~~~~  141 (268)
                      ...+++.....+-++++|+. ++.+..+.... ++.|      .+.....-++.++ .+   ..|.+|.+..........
T Consensus        39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~Gr-~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~  116 (353)
T d1h6la_          39 QNSKLITTNKKSGLAVYSLE-GKMLHSYHTGK-LNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSI  116 (353)
T ss_dssp             GGCEEEEEETTSCCEEEETT-CCEEEECCSSC-EEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEEC
T ss_pred             CccEEEEEcCcCCEEEEcCC-CcEEEecccCC-cCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccc
Confidence            34444444455559999984 66666654322 2222      2333333344444 21   357778664222111111


Q ss_pred             cC-------CcccEEEEEE--eCCCC-cEEEEeeCCCeEEEEeC---CCC----ceEEeecCCCCEEEEEECCCCcEE-E
Q 024372          142 GN-------SSGSIRTVAW--LHSDQ-TILSSCTDSGGVRLWDA---RSG----KIVQTLETKSPVTSAEVSRDGRYI-T  203 (268)
Q Consensus       142 ~~-------~~~~v~~~~~--~~~~~-~~~~~~~~d~~i~iwd~---~~~----~~~~~~~~~~~v~~~~~s~~g~~l-~  203 (268)
                      ..       ....+..++.  .+.++ .++.....+|.+..|.+   ..+    +.++++.....+..|.+.+....| +
T Consensus       117 ~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~Lyi  196 (353)
T d1h6la_         117 TDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSLYI  196 (353)
T ss_dssp             SCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEEEE
T ss_pred             cccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcEEE
Confidence            11       1122444554  55544 34445556688888765   333    345667767789999999886555 4


Q ss_pred             EeCCCeEEEEeCCCc-----eeeeEEe---CCCCceeeEEc--CC-CCCEEEeccCCCeEEEEECCC-CcEEee
Q 024372          204 TADGSSVKFWDANHF-----GLVKGYN---MPCNTESASLE--PK-LGNIFIAGGEDMWVHVFDFHT-GEQIAI  265 (268)
Q Consensus       204 ~~~~~~v~~wd~~~~-----~~~~~~~---~~~~~~~~~~~--~~-~~~~~~~gs~d~~i~~wd~~~-g~~~~~  265 (268)
                      +-++..|..++....     ..+....   +...+.-+++-  .+ .|.++++...|....+||.++ .+.+..
T Consensus       197 sEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~  270 (353)
T d1h6la_         197 AEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVAD  270 (353)
T ss_dssp             EETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred             ecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccce
Confidence            556666666665321     1121111   12233333332  22 344555555688899999765 455544

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.42  E-value=4.9  Score=30.71  Aligned_cols=192  Identities=9%  Similarity=0.102  Sum_probs=109.7

Q ss_pred             CCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcE-EEEeeCCCcEEEEeCCC-CCeeeeec-c----
Q 024372           29 PDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALF-SASGSADFTAKLWDALT-GDEKHSFE-H----  101 (268)
Q Consensus        29 ~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~-l~s~s~D~~v~iw~~~~-~~~~~~~~-~----  101 (268)
                      |..+.||--+ ..+++|+|+++.+.++.+.-.+ +|.-=.|-.+..+ |+|   +..|+=|++.. ..+...+. |    
T Consensus        72 P~~~IiALra-g~~LQiFnletK~klks~~~~e-~VvfWkWis~~~L~lVT---~taVYHW~~~g~s~P~k~fdR~~~L~  146 (327)
T d1utca2          72 PASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALVT---DNAVYHWSMEGESQPVKMFDRHSSLA  146 (327)
T ss_dssp             SSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEESSSSEEEEEC---SSEEEEEESSSSCCCEEEEECCGGGT
T ss_pred             CCCcEEEEec-CCeEEEEehhHhhhhceEEcCC-CcEEEEecCCCEEEEEc---CCceEEEcccCCCCchhhhhhccccc
Confidence            3445666555 5689999999998887776555 4444456544433 333   55799999843 23444443 2    


Q ss_pred             CCeEEEEEECCCCCEEEEee-------CCCeEEEEECCCCCCCCeEecCCcccEEEEEEe--CCCCcEEEEe---eCCCe
Q 024372          102 KHIVRACAFSEDTHLLLTGG-------FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWL--HSDQTILSSC---TDSGG  169 (268)
Q Consensus       102 ~~~v~~v~~~~~~~~l~s~~-------~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~---~~d~~  169 (268)
                      ...|-....+++.++++..+       -.|.+.+|..+.  ...+.+.+|.+....+...  +.-..++.-+   ...+.
T Consensus       147 ~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er--~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~k  224 (327)
T d1utca2         147 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR--KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGK  224 (327)
T ss_dssp             TCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT--TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEE
T ss_pred             CceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc--CcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcE
Confidence            23566677788888887532       225678998753  3345566665433333211  0001222221   12257


Q ss_pred             EEEEeCCCCc----e-----EEe-ecC---CCCEEEEEECCCCcEE-EEeCCCeEEEEeCCCceeeeEEeCC
Q 024372          170 VRLWDARSGK----I-----VQT-LET---KSPVTSAEVSRDGRYI-TTADGSSVKFWDANHFGLVKGYNMP  227 (268)
Q Consensus       170 i~iwd~~~~~----~-----~~~-~~~---~~~v~~~~~s~~g~~l-~~~~~~~v~~wd~~~~~~~~~~~~~  227 (268)
                      +.|-++.+..    .     +.. ++.   .....++.+++--.++ +..--|.|.++|++++.++..-...
T Consensus       225 LhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs  296 (327)
T d1utca2         225 LHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS  296 (327)
T ss_dssp             EEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             EEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecC
Confidence            8888875421    1     111 111   1224567777654444 4556689999999999887655543

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.96  E-value=9.8  Score=28.97  Aligned_cols=214  Identities=11%  Similarity=0.130  Sum_probs=120.7

Q ss_pred             CeEEeeCCCCC-eE-EEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEE
Q 024372           42 SPMLRNGETGD-WI-GTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLT  119 (268)
Q Consensus        42 ~i~iw~~~~~~-~~-~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s  119 (268)
                      ++.|-|...+. .+ +.+.+ .+.    =.+|....+|--+ ..+++++|+++......+...++|.-=.|-.+. .|+-
T Consensus        46 ~VvIidl~n~~~~~Rrpi~A-dsA----IMhP~~~IiALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~~-~L~l  118 (327)
T d1utca2          46 QVVIIDMNDPSNPIRRPISA-DSA----IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN-TVAL  118 (327)
T ss_dssp             EEEEEETTSTTSCEEEECCC-SEE----EECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEESSSS-EEEE
T ss_pred             eEEEEECCCCCcceecccch-hhh----hcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCCCcEEEEecCCC-EEEE
Confidence            56677776654 22 22222 222    2578888876544 568999999999999888888877666664433 4544


Q ss_pred             eeCCCeEEEEECCCCCCCCeEecCCc----ccEEEEEEeCCCCcEEEEee--CC----CeEEEEeCCCCceEEeecCCCC
Q 024372          120 GGFEKILRIFDLNRPDAPPREVGNSS----GSIRTVAWLHSDQTILSSCT--DS----GGVRLWDARSGKIVQTLETKSP  189 (268)
Q Consensus       120 ~~~d~~i~~~d~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~--~d----~~i~iwd~~~~~~~~~~~~~~~  189 (268)
                      .+ +..+.-|+++....+...+..|.    .-|..-..+++..++++.|-  .+    |.+.+|..+.+ .-+.+++|..
T Consensus       119 VT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa  196 (327)
T d1utca2         119 VT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAA  196 (327)
T ss_dssp             EC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEE
T ss_pred             Ec-CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccceee
Confidence            43 45688999865444444443332    23444455677777766541  11    57889988743 3455565532


Q ss_pred             E-EEEEECCC--C-cEEEEe----CCCeEEEEeCCCce---e---eeEEe--CCC-----CceeeEEcCCCCCEEEeccC
Q 024372          190 V-TSAEVSRD--G-RYITTA----DGSSVKFWDANHFG---L---VKGYN--MPC-----NTESASLEPKLGNIFIAGGE  248 (268)
Q Consensus       190 v-~~~~~s~~--g-~~l~~~----~~~~v~~wd~~~~~---~---~~~~~--~~~-----~~~~~~~~~~~~~~~~~gs~  248 (268)
                      . ..+.+..+  . .++.-+    ..+.+++-++.+..   .   .+...  .+.     -+.+...++. -..+..-+.
T Consensus       197 ~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~k-ygiiyviTK  275 (327)
T d1utca2         197 SFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEK-HDVVFLITK  275 (327)
T ss_dssp             EEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETT-TTEEEEEET
T ss_pred             eeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeecc-CCEEEEEec
Confidence            1 11212111  1 222212    23577888875421   0   11111  121     1234444543 345666677


Q ss_pred             CCeEEEEECCCCcEEee
Q 024372          249 DMWVHVFDFHTGEQIAI  265 (268)
Q Consensus       249 d~~i~~wd~~~g~~~~~  265 (268)
                      -|.|++||+.||..+..
T Consensus       276 ~G~i~lyDleTgt~i~~  292 (327)
T d1utca2         276 YGYIHLYDLETGTCIYM  292 (327)
T ss_dssp             TSEEEEEETTTCCEEEE
T ss_pred             CcEEEEEEcccccEEEE
Confidence            88999999999988754