Citrus Sinensis ID: 024387

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
Protein Sequence
MASTVSTQMRLHSPALIFQGSYSQGVANVCMLPMTSSITNSQSGHCPASTLKLSGRALTSRSHYASSFPIVQLSKAPSVKYRRMFCVNSMAKDVELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLDA
Secondary Structure (PSIPRED)
cccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccHHHHHHEEcccccHHHHcccccccEEEEEEEEccEEEEEEEEEEccccccHHHHHHHHHHcccccccccccccccEEEcccEEccccccccccccccccccccccccccccccccccEEEEcccccccccccEEEEcccccccccccEEEEEEcccHHHHHHHHHccccccccccccEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEccccccccccccccccccccccEEEEEEcccccccccccccccccccccccccHHHccccccccccHHHcccHHHHHHccHHHccccHHHcEEEEEEEEEccEEEEEEEEEEcccccHHHHHHHHHHHHHccccccccccEEEEEEcccEEEEccccccccccccEccEccEcccccccccccccEEEEcccccccEcccEEEEccccHHHcccccEEEEEEEcHHHHHHHHcccEcccccEcccEEEEEEEEEEEEc
Coil and Loop (DISEMBL)
mastvstqmrlhspalifqgsysqgvanvcmlpmtssitnsqsghcpastlklsgraltsrshyassfpivqlskapsvkyrRMFCVNSMAKDVELQAKVTTKVffdvdiggkpagrivmglfgdvvpKTAENFRALCTAgekgygykgcsFHRIIKDFMiqggdftegdgtggisiygssfedesfvlkhvgpgvlsmanagpntngsqffictvktpwldnrhvvFGHVIDGMDVVRKLESVetsrtdypkvpcriinsgelplda
Flexible Loop (DISEMBL)
mastvstqmrlhspaliFQGSYSQGVANVCMLPMTSSITNSQSGHCPASTLKLSGRALTSRshyassfpivqlskapsVKYRRMFCVNSMAKDVELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVetsrtdypkvpcriinsgelplda
Low Complexity Region (SEG)
MASTVSTQMRLHSPALIFQGSYSQGVANVCMLPMTSSITNSQSGHCPASTLKLSGRALTSRSHYASSFPIVQLSKAPSVKYRRMFCVNSMAKDVELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQggdftegdgtggISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLDA
Disordered region (IsUnstruct)
**************ALIFQGSYSQGVANVCMLPMT***************************HYASSFPIVQLSKAPSVKYRRMFCVNSMAKDVELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRII*********
Disordered Region (DISOPRED)
********************************************************************************YR********************KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVR****************CRIINSGELPL**
Disordered Region (DISEMBL)
********MRLHSPALIFQGSYSQGVANVCMLPMTSSI**********STLKLSGRALTSRSHYASSFPIVQLSKAPSVKYRRMFCVNSMAKDVELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLDA
Disordered Region (DISPRO)
*****STQMRLHSPALIFQGSYSQGVANVCMLPMTSSITNSQSGHCPASTLKLSGRALTSRSHYASSFPIVQLSKAPSVKYRRMFCVNSMAKDVELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLDA
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASTVSTQMRLHSPALIFQGSYSQGVANVCMLPMTSSITNSQSGHCPASTLKLSGRALTSRSHYASSFPIVQLSKAPSVKYRRMFCVNSMAKDVELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLDA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	268	2.2.26 [Sep-21-2011]
P34791	260	Peptidyl-prolyl cis-trans	yes	no	0.951	0.980	0.619	1e-86
Q41651	248	Peptidyl-prolyl cis-trans	N/A	no	0.783	0.846	0.708	2e-84
P0CP78	231	Peptidyl-prolyl cis-trans	yes	no	0.626	0.727	0.722	1e-67
P0CP79	231	Peptidyl-prolyl cis-trans	N/A	no	0.626	0.727	0.722	1e-67
Q9ASS6	259	Peptidyl-prolyl cis-trans	no	no	0.694	0.718	0.643	3e-67
Q01490	203	Peptidyl-prolyl cis-trans	N/A	no	0.623	0.822	0.678	4e-62
Q8X166	212	Peptidyl-prolyl cis-trans	yes	no	0.615	0.778	0.650	6e-61
Q7S7Z6	285	Peptidyl-prolyl cis-trans	N/A	no	0.615	0.578	0.662	3e-60
P24369	216	Peptidyl-prolyl cis-trans	yes	no	0.664	0.824	0.625	6e-60
Q5B4R3	214	Peptidyl-prolyl cis-trans	yes	no	0.630	0.789	0.617	2e-59

>sp|P34791|CP20C_ARATH Peptidyl-prolyl cis-trans isomerase CYP20-3, chloroplastic OS=Arabidopsis thaliana GN=CYP20-3 PE=1 SV=1

 Score =  319 bits (818), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 169/273 (61%), Positives = 199/273 (72%), Gaps = 18/273 (6%)

Query: 1   MASTVSTQMRLHSPALIFQGSYSQGVANVCMLPMTSSITNSQSGHCPASTLKLSGRALTS 60
           MAS+ S QM +H+         S+ +A +     +  ++ +++        + SG AL+S
Sbjct: 1   MASSSSMQM-VHT---------SRSIAQIGFGVKSQLVSANRTTQSVCFGARSSGIALSS 50

Query: 61  RSHYASSFPIVQLSKA-PSVKYRRMFCVNSMAKD----VELQAKVTTKVFFDVDIGGKPA 115
           R HYAS  PI Q S    + K++R  CV SMA +    +E QAKVT KV+FDV+IGG+ A
Sbjct: 51  RLHYAS--PIKQFSGVYATTKHQRTACVKSMAAEEEEVIEPQAKVTNKVYFDVEIGGEVA 108

Query: 116 GRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGI 175
           GRIVMGLFG+VVPKT ENFRALCT GEK YGYKG SFHRIIKDFMIQGGDFTEG+GTGGI
Sbjct: 109 GRIVMGLFGEVVPKTVENFRALCT-GEKKYGYKGSSFHRIIKDFMIQGGDFTEGNGTGGI 167

Query: 176 SIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGM 235
           SIYG+ FEDE+F LKH GPG+LSMANAGPNTNGSQFFICTVKT WLDN+HVVFG VI+GM
Sbjct: 168 SIYGAKFEDENFTLKHTGPGILSMANAGPNTNGSQFFICTVKTSWLDNKHVVFGQVIEGM 227

Query: 236 DVVRKLESVETSRTDYPKVPCRIINSGELPLDA 268
            +VR LES ET   D PK  CRI   GELPLDA
Sbjct: 228 KLVRTLESQETRAFDVPKKGCRIYACGELPLDA 260

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8

>sp|Q41651|CYPB_VICFA Peptidyl-prolyl cis-trans isomerase, chloroplastic OS=Vicia faba PE=1 SV=1

 Score =  312 bits (800), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 151/213 (70%), Positives = 174/213 (81%), Gaps = 3/213 (1%)

Query: 58  LTSRSHYASSFPIVQLSKAPSVKYRRMFCVNSMAKDV-ELQAKVTTKVFFDVDIGGKPAG 116
           L+S  HYA    + Q SKA S+  RR+ C +    +V ELQAKVT+K+FFD++IGG+ AG
Sbjct: 37  LSSTYHYAPRLSVSQQSKAKSITSRRITCASGAQGEVAELQAKVTSKIFFDIEIGGESAG 96

Query: 117 RIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGIS 176
           RIV+GLFGD VPKT ENF+ L T G KGYGY+G  FHRII +FMIQGGDFTEG+GTGG+S
Sbjct: 97  RIVIGLFGDAVPKTVENFKTLST-GAKGYGYQGSFFHRIIPNFMIQGGDFTEGNGTGGVS 155

Query: 177 IYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMD 236
           IYGS FEDESF LKHVGPGVLSMANAGPNTNGSQFFICTV TPWLDNRHVVFGHVI+G+D
Sbjct: 156 IYGSKFEDESFDLKHVGPGVLSMANAGPNTNGSQFFICTVPTPWLDNRHVVFGHVIEGLD 215

Query: 237 VVRKLESVETSRTDY-PKVPCRIINSGELPLDA 268
           VV++LES ETS+ D  PK PC+I  SGELPLD 
Sbjct: 216 VVKQLESQETSKLDNSPKKPCKIAKSGELPLDG 248

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Vicia faba (taxid: 3906)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P0CP78|PPIB_CRYNJ Peptidyl-prolyl cis-trans isomerase B OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=CPR2 PE=3 SV=1

 Score =  256 bits (654), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 125/173 (72%), Positives = 142/173 (82%), Gaps = 5/173 (2%)

Query: 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTA----GEK-GYGYKGCSFHR 154
           +T KV+FD++ GGKP GRIVMGL+G  VPKTAENFRAL T     GE  GYGY+G SFHR
Sbjct: 43  ITNKVYFDIEHGGKPLGRIVMGLYGKTVPKTAENFRALATGKNSDGEDLGYGYEGSSFHR 102

Query: 155 IIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFIC 214
           IIK+FMIQGGDFT+GDGTGG SIYGS F DE+F LKH GPGVLSMANAG +TNGSQFFIC
Sbjct: 103 IIKNFMIQGGDFTKGDGTGGKSIYGSKFPDENFKLKHTGPGVLSMANAGRDTNGSQFFIC 162

Query: 215 TVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLD 267
           TVKT WLDNRHVVFGHV++GMDVV  +E+V+TSR D P  P  I  SGELP++
Sbjct: 163 TVKTAWLDNRHVVFGHVLEGMDVVYAMENVKTSRGDKPVEPITIAASGELPIE 215

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P0CP79|PPIB_CRYNB Peptidyl-prolyl cis-trans isomerase B OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=CPR2 PE=3 SV=1

 Score =  256 bits (654), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 125/173 (72%), Positives = 142/173 (82%), Gaps = 5/173 (2%)

Query: 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTA----GEK-GYGYKGCSFHR 154
           +T KV+FD++ GGKP GRIVMGL+G  VPKTAENFRAL T     GE  GYGY+G SFHR
Sbjct: 43  ITNKVYFDIEHGGKPLGRIVMGLYGKTVPKTAENFRALATGKNSDGEDLGYGYEGSSFHR 102

Query: 155 IIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFIC 214
           IIK+FMIQGGDFT+GDGTGG SIYGS F DE+F LKH GPGVLSMANAG +TNGSQFFIC
Sbjct: 103 IIKNFMIQGGDFTKGDGTGGKSIYGSKFPDENFKLKHTGPGVLSMANAGRDTNGSQFFIC 162

Query: 215 TVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLD 267
           TVKT WLDNRHVVFGHV++GMDVV  +E+V+TSR D P  P  I  SGELP++
Sbjct: 163 TVKTAWLDNRHVVFGHVLEGMDVVYAMENVKTSRGDKPVEPITIAASGELPIE 215

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9ASS6|CP20B_ARATH Peptidyl-prolyl cis-trans isomerase CYP20-2, chloroplastic OS=Arabidopsis thaliana GN=CYP20-2 PE=1 SV=1

 Score =  255 bits (651), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 123/191 (64%), Positives = 152/191 (79%), Gaps = 5/191 (2%)

Query: 80  KYRRMFCVNSMAKDV-ELQAKVTTKVFFDVDIG---GKPAGRIVMGLFGDVVPKTAENFR 135
           +  R F V S A+ V E Q+K+T KV+FD+ +G   GK AGRIV+GL+GD VP+T ENFR
Sbjct: 67  RNHRCFSVQSNAEVVTEPQSKITHKVYFDISVGNPVGKLAGRIVIGLYGDDVPQTVENFR 126

Query: 136 ALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPG 195
           ALCT GEKG+GYKG +FHR+I+DFMIQGGDF +G+GTGG S+YG +F+DE+F L HVGPG
Sbjct: 127 ALCT-GEKGFGYKGSTFHRVIRDFMIQGGDFEKGNGTGGKSVYGRTFKDENFKLSHVGPG 185

Query: 196 VLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVP 255
           VLSMANAGPNTNGSQFFICT+KT WLD RHVVFG VI+GM+VV+ +E  ET R D P+  
Sbjct: 186 VLSMANAGPNTNGSQFFICTIKTSWLDGRHVVFGQVIEGMEVVKLIEEQETDRGDRPRKK 245

Query: 256 CRIINSGELPL 266
             I + G+LP+
Sbjct: 246 VVIADCGQLPM 256

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q01490|PPIB_ORPSP Peptidyl-prolyl cis-trans isomerase B OS=Orpinomyces sp. (strain PC-2) GN=CYPB PE=1 SV=1

 Score =  238 bits (606), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 114/168 (67%), Positives = 130/168 (77%), Gaps = 1/168 (0%)

Query: 99  KVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKD 158
           KVT KV+FD+  G K  GRIV+GL+G+VVPKT ENFRAL T GEKGYGYK   FHR+IKD
Sbjct: 27  KVTNKVYFDIKQGDKDLGRIVLGLYGEVVPKTVENFRALAT-GEKGYGYKNSKFHRVIKD 85

Query: 159 FMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKT 218
           FMIQGGDFT GDGTGG SIYG  F DE+F L+H GPG+LSMANAG +TNGSQFFI TV T
Sbjct: 86  FMIQGGDFTRGDGTGGKSIYGERFADENFKLRHTGPGILSMANAGRDTNGSQFFITTVTT 145

Query: 219 PWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPL 266
            WLD RHVVFG VI+GMDVV  +E+ +T   D P  P  I + GELP+
Sbjct: 146 SWLDGRHVVFGKVIEGMDVVTAIETTKTLPGDRPATPVIIADCGELPV 193

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Orpinomyces sp. (strain PC-2) (taxid: 50059)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q8X166|PPIB_ASPNG Peptidyl-prolyl cis-trans isomerase B OS=Aspergillus niger GN=cypB PE=3 SV=1

 Score =  234 bits (596), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 108/166 (65%), Positives = 133/166 (80%), Gaps = 1/166 (0%)

Query: 99  KVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKD 158
           K+T+KVFFD++ G KP GR+V+GL+G  VPKTAENFRAL T GEKG+GY+G +FHR+IKD
Sbjct: 32  KITSKVFFDIEHGDKPLGRVVLGLYGKTVPKTAENFRALAT-GEKGFGYEGSTFHRVIKD 90

Query: 159 FMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKT 218
           FMIQGGDFT GDGTGG SIYG  F DE+F L+H   G+LSMANAG +TNGSQFFI TV T
Sbjct: 91  FMIQGGDFTRGDGTGGKSIYGEKFADENFKLRHTRKGLLSMANAGKDTNGSQFFITTVPT 150

Query: 219 PWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
           PWLD RHVVFG V++G ++V ++E+V   R+D P    +I+ SGEL
Sbjct: 151 PWLDGRHVVFGEVLEGYEIVAQIENVPKGRSDRPVETVKIVKSGEL 196

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Aspergillus niger (taxid: 5061)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q7S7Z6|PPIB_NEUCR Peptidyl-prolyl cis-trans isomerase B OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=cpr-2 PE=3 SV=3

 Score =  231 bits (590), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 110/166 (66%), Positives = 130/166 (78%), Gaps = 1/166 (0%)

Query: 99  KVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKD 158
           K+T KV+FD++ G KP GRIVMGL+G  VPKTAENFRAL T GEKG+GY+G +FHR+IK 
Sbjct: 32  KITHKVYFDIEQGDKPLGRIVMGLYGKTVPKTAENFRALAT-GEKGFGYEGSTFHRVIKQ 90

Query: 159 FMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKT 218
           FMIQGGDFT+GDGTGG SIYG  F DE+F LKH   G+LSMANAG +TNGSQFFI TV T
Sbjct: 91  FMIQGGDFTKGDGTGGKSIYGDKFPDENFKLKHSKKGLLSMANAGKDTNGSQFFITTVIT 150

Query: 219 PWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
            WLD +HVVFG V++G DVV K+E+ +T   D P  P +I  SGEL
Sbjct: 151 SWLDGKHVVFGEVLEGYDVVEKIENTKTGPRDAPAEPIKIAKSGEL 196

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P24369|PPIB_MOUSE Peptidyl-prolyl cis-trans isomerase B OS=Mus musculus GN=Ppib PE=2 SV=2

 Score =  231 bits (588), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 112/179 (62%), Positives = 135/179 (75%), Gaps = 1/179 (0%)

Query: 89  SMAKDVELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYK 148
           S+A D +   KVT KV+FD+ IG +  GR+V GLFG  VPKT +NF AL T GEKG+GYK
Sbjct: 31  SVANDKKKGPKVTVKVYFDLQIGDESVGRVVFGLFGKTVPKTVDNFVALAT-GEKGFGYK 89

Query: 149 GCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNG 208
              FHR+IKDFMIQGGDFT GDGTGG SIYG  F DE+F LKH GPG +SMANAG +TNG
Sbjct: 90  NSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNG 149

Query: 209 SQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLD 267
           SQFFI TVKT WLD +HVVFG V++GMDVVRK+ES +T   D P     I++SG++ ++
Sbjct: 150 SQFFITTVKTSWLDGKHVVFGKVLEGMDVVRKVESTKTDSRDKPLKDVIIVDSGKIEVE 208

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q5B4R3|PPIB_EMENI Peptidyl-prolyl cis-trans isomerase B OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=cpr2 PE=3 SV=1

 Score =  229 bits (584), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 105/170 (61%), Positives = 133/170 (78%), Gaps = 1/170 (0%)

Query: 99  KVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKD 158
           K+T KV+FD+  G +  GRIV+GL+G  VP+TAENFRAL T GEKG+GY+G +FHR+IKD
Sbjct: 31  KITNKVYFDIQHGDESLGRIVLGLYGKTVPETAENFRALAT-GEKGFGYEGSNFHRVIKD 89

Query: 159 FMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKT 218
           FMIQGGDFT GDGTGG SIYG+ F+DE+F L+H   G+LSMANAG +TNGSQFFI T  T
Sbjct: 90  FMIQGGDFTRGDGTGGKSIYGAKFKDENFKLRHTKTGLLSMANAGKDTNGSQFFITTAVT 149

Query: 219 PWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLDA 268
           PWLD +HVVFG V++G D+V K+++V   R D P    +I+ SGEL ++A
Sbjct: 150 PWLDGKHVVFGEVLEGYDIVDKIQNVPKGRNDRPLKDVKIVKSGELEMEA 199

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	268
255548201	261	peptidyl-prolyl cis-trans isomerase, put	0.970	0.996	0.782	1e-116
224064414	266	predicted protein [Populus trichocarpa]	0.992	1.0	0.768	1e-116
147766520	253	hypothetical protein VITISV_015631 [Viti	0.910	0.964	0.757	1e-105
359480225	253	PREDICTED: peptidyl-prolyl cis-trans iso	0.910	0.964	0.753	1e-105
359806424	260	uncharacterized protein LOC100785805 [Gl	0.966	0.996	0.676	2e-97
356534945	263	PREDICTED: peptidyl-prolyl cis-trans iso	0.951	0.969	0.634	1e-94
388500332	262	unknown [Lotus japonicus]	0.951	0.973	0.666	2e-94
357511613	256	Peptidyl-prolyl cis-trans isomerase [Med	0.944	0.988	0.657	2e-92
388510812	261	unknown [Medicago truncatula]	0.944	0.969	0.657	3e-92
356534947	252	PREDICTED: peptidyl-prolyl cis-trans iso	0.861	0.916	0.676	8e-91

>gi|255548201|ref|XP_002515157.1| peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis] gi|223545637|gb|EEF47141.1| peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 209/267 (78%), Positives = 232/267 (86%), Gaps = 7/267 (2%)

Query: 1   MASTVSTQMRLHSPALIFQGSYSQGVANVCMLPMTSSITNSQSGHCPASTLKLSGRALTS 60
           MAST S Q  + +P L+F+G+  Q V N+    M S++ +S SG     TL  +GRALTS
Sbjct: 1   MASTFSLQT-VPAPRLVFKGTDGQDVKNLSRTCMISAMRSSASG-----TLSFAGRALTS 54

Query: 61  RSHYASSFPIVQLSKAPSVKYRRMFCVNSMAKDVELQAKVTTKVFFDVDIGGKPAGRIVM 120
           RS Y+ SFPI QLSKAPSVK++RM C+ +MA D+E+QAKVTTKVFFDVDIGG+PAGRIVM
Sbjct: 55  RSRYSLSFPITQLSKAPSVKHQRMACIKAMANDLEVQAKVTTKVFFDVDIGGEPAGRIVM 114

Query: 121 GLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGS 180
           GLFGDVVPKTAENFRALCT G+KGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGG+SI+GS
Sbjct: 115 GLFGDVVPKTAENFRALCT-GDKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGVSIFGS 173

Query: 181 SFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRK 240
           SFEDESF LKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFG VIDGMDVVRK
Sbjct: 174 SFEDESFDLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGQVIDGMDVVRK 233

Query: 241 LESVETSRTDYPKVPCRIINSGELPLD 267
           LESVETSR+DYP+ PCRIIN GELPLD
Sbjct: 234 LESVETSRSDYPRKPCRIINCGELPLD 260

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224064414|ref|XP_002301464.1| predicted protein [Populus trichocarpa] gi|222843190|gb|EEE80737.1| predicted protein [Populus trichocarpa]

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 206/268 (76%), Positives = 226/268 (84%), Gaps = 2/268 (0%)

Query: 1   MASTVSTQMRLHSPALIFQGSYSQGVANVCMLPMTSSITNSQSGHCPASTLKLSGRALTS 60
           MAST S QM  HSP L+ QGSY Q   N       S+I N++ G+    TL   GRALTS
Sbjct: 1   MASTSSMQM-AHSPRLVIQGSYEQDFLNTSRPHKISTIRNARGGYSQTPTLNCLGRALTS 59

Query: 61  RSHYASSFPIVQLSKAPSVKYRRMFCVNSMAKDVELQAKVTTKVFFDVDIGGKPAGRIVM 120
           RSHYAS FPI++L KAP +K +RM C NSMA DV+LQAKVTTK FFDV++GG+  GRIVM
Sbjct: 60  RSHYASKFPIIRLPKAPYIKNQRMACANSMANDVDLQAKVTTKCFFDVEVGGELVGRIVM 119

Query: 121 GLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGS 180
           GLFGDVVPKTAENFRALCT G+KGYGYKGCSFHRIIKDFMIQGGDFT GDGTGG SIYGS
Sbjct: 120 GLFGDVVPKTAENFRALCT-GDKGYGYKGCSFHRIIKDFMIQGGDFTRGDGTGGKSIYGS 178

Query: 181 SFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRK 240
           SFEDESF LKHVGPGVLSMANAGPNTNGSQFFIC+VKTPWLDNRHVVFGHVIDGMDVVRK
Sbjct: 179 SFEDESFSLKHVGPGVLSMANAGPNTNGSQFFICSVKTPWLDNRHVVFGHVIDGMDVVRK 238

Query: 241 LESVETSRTDYPKVPCRIINSGELPLDA 268
           LESVETSR+D P+ PCR++NSGELPLD+
Sbjct: 239 LESVETSRSDNPRKPCRVVNSGELPLDS 266

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147766520|emb|CAN69876.1| hypothetical protein VITISV_015631 [Vitis vinifera]

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 191/252 (75%), Positives = 210/252 (83%), Gaps = 8/252 (3%)

Query: 17  IFQGSYSQGVANVCMLPMTSSITNSQSGHCPASTLKLSGRALTSRSHYASSFPIVQLSKA 76
           +FQ  +S+ + ++   P+ S I     G  P  TL   GR L S+SHYAS F I  LSKA
Sbjct: 10  VFQAVFSKDIPSLPRRPVVSCI-----GKTP--TLSCHGRGLASKSHYASCFSITPLSKA 62

Query: 77  PSVKYRRMFCVNSMAKDVELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRA 136
            S  +RR+ CVNSMA +VELQAKVTTK FFDVDIGG+P GRIV+GLFG+VVPKTAENFR 
Sbjct: 63  SSAGHRRLMCVNSMANEVELQAKVTTKCFFDVDIGGEPVGRIVIGLFGEVVPKTAENFRV 122

Query: 137 LCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGV 196
           LCT GEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDE+F L HVGPGV
Sbjct: 123 LCT-GEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDENFALTHVGPGV 181

Query: 197 LSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPC 256
           LSMANAGPNTNGSQFFICTVKTPWLD RHVVFGHVIDGMDVVRKLES ETSR+DYPK+ C
Sbjct: 182 LSMANAGPNTNGSQFFICTVKTPWLDRRHVVFGHVIDGMDVVRKLESQETSRSDYPKLTC 241

Query: 257 RIINSGELPLDA 268
           RIIN GELP+D+
Sbjct: 242 RIINCGELPMDS 253

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480225|ref|XP_002273421.2| PREDICTED: peptidyl-prolyl cis-trans isomerase CYP20-3, chloroplastic-like isoform 1 [Vitis vinifera] gi|297744066|emb|CBI37036.3| unnamed protein product [Vitis vinifera]

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 190/252 (75%), Positives = 209/252 (82%), Gaps = 8/252 (3%)

Query: 17  IFQGSYSQGVANVCMLPMTSSITNSQSGHCPASTLKLSGRALTSRSHYASSFPIVQLSKA 76
           +FQ  +S+ + ++   P+ S I     G  P  TL   GR L S+SHYAS F I  LSK 
Sbjct: 10  VFQAVFSKDIPSLPRRPVVSCI-----GKTP--TLSCHGRGLASKSHYASCFSITPLSKV 62

Query: 77  PSVKYRRMFCVNSMAKDVELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRA 136
            S  +RR+ CVNSMA +VELQAKVTTK FFDVDIGG+P GRIV+GLFG+VVPKTAENFR 
Sbjct: 63  NSAGHRRLMCVNSMANEVELQAKVTTKCFFDVDIGGEPVGRIVIGLFGEVVPKTAENFRV 122

Query: 137 LCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGV 196
           LCT GEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDE+F L HVGPGV
Sbjct: 123 LCT-GEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDENFALTHVGPGV 181

Query: 197 LSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPC 256
           LSMANAGPNTNGSQFFICTVKTPWLD RHVVFGHVIDGMDVVRKLES ETSR+DYPK+ C
Sbjct: 182 LSMANAGPNTNGSQFFICTVKTPWLDRRHVVFGHVIDGMDVVRKLESQETSRSDYPKLTC 241

Query: 257 RIINSGELPLDA 268
           RIIN GELP+D+
Sbjct: 242 RIINCGELPMDS 253

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806424|ref|NP_001240987.1| uncharacterized protein LOC100785805 [Glycine max] gi|255645203|gb|ACU23099.1| unknown [Glycine max]

 Score =  361 bits (926), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 182/269 (67%), Positives = 210/269 (78%), Gaps = 10/269 (3%)

Query: 1   MASTVSTQM-RLHSPALIFQGSYSQGVANVCMLPMTSSITNSQSGHCPASTLKLSGRALT 59
           MAS +S Q+ +  +     QG++SQ V+ V    +    T S  G+         G+ALT
Sbjct: 1   MASPLSAQLVQCQNSLPPLQGNFSQDVSKVQRSRVVCYGTRSPLGY--------YGKALT 52

Query: 60  SRSHYASSFPIVQLSKAPSVKYRRMFCVNSMAKDVELQAKVTTKVFFDVDIGGKPAGRIV 119
           SRSH A  F + + S+A S+ YRRM CVN+    VELQAKVTTK FFDV++GG+P GRIV
Sbjct: 53  SRSHNALRFSVTRQSEARSIGYRRMTCVNAADNVVELQAKVTTKCFFDVEVGGEPVGRIV 112

Query: 120 MGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYG 179
           +GLFG+VVPKT ENFRALCT GEKGYGYKG SFHRIIKDFMIQGGDFTEG+GTGGISIYG
Sbjct: 113 LGLFGEVVPKTVENFRALCT-GEKGYGYKGSSFHRIIKDFMIQGGDFTEGNGTGGISIYG 171

Query: 180 SSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVR 239
            SF+DESF LKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGH+IDGMDVV+
Sbjct: 172 PSFKDESFALKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHIIDGMDVVK 231

Query: 240 KLESVETSRTDYPKVPCRIINSGELPLDA 268
            LES ETSR D P+ PCRI+N GELP++ 
Sbjct: 232 TLESQETSRLDVPRKPCRIVNCGELPIEG 260

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534945|ref|XP_003536011.1| PREDICTED: peptidyl-prolyl cis-trans isomerase, chloroplastic isoform 1 [Glycine max]

 Score =  352 bits (903), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 175/276 (63%), Positives = 208/276 (75%), Gaps = 21/276 (7%)

Query: 1   MASTVSTQM--------RLHSPALIFQGSYSQGVANVCMLPMTSSITNSQSGHCPASTLK 52
           M S+ STQ+        R H      QG++SQ V+ V M  +  S T SQ G+       
Sbjct: 1   MTSSFSTQLVQSQNLPPRFHRHV---QGNFSQDVSKVSMTHVVRSSTKSQLGY------- 50

Query: 53  LSGRALTSRSHYASSFPIVQLSKAPSVKYRRMFCVNSMAKDVELQAKVTTKVFFDVDIGG 112
             G+ L SRSHYA+ F + + S+A S+ YRRM C N+    ++LQAKVT K FFDV+IGG
Sbjct: 51  --GKTLASRSHYAARFSVSRQSEAKSITYRRMTCTNAKENVLQLQAKVTNKCFFDVEIGG 108

Query: 113 KPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGT 172
           +PAGR+V GLFG+ VPKT ENFRALCT GEKGYGYKG  FHRII++FM+QGGDFTEG+GT
Sbjct: 109 EPAGRVVFGLFGEDVPKTVENFRALCT-GEKGYGYKGSYFHRIIQNFMVQGGDFTEGNGT 167

Query: 173 GGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVI 232
           GGISIYG SF+DE+F LKHVGPGVLSMANAG NTNGSQFFICTV+TPWLDNRHVVFGHVI
Sbjct: 168 GGISIYGDSFDDENFNLKHVGPGVLSMANAGTNTNGSQFFICTVQTPWLDNRHVVFGHVI 227

Query: 233 DGMDVVRKLESVETSRTDYPKVPCRIINSGELPLDA 268
           DGMDVVR LES ET + D P+ PC+I +SGELP+D+
Sbjct: 228 DGMDVVRTLESQETGKFDNPRKPCKIADSGELPIDS 263

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500332|gb|AFK38232.1| unknown [Lotus japonicus]

 Score =  351 bits (901), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 182/273 (66%), Positives = 209/273 (76%), Gaps = 18/273 (6%)

Query: 1   MASTVSTQMRLHSPALI-----FQGSYSQGVANVCMLPMTSSITNSQSGHCPASTLKLSG 55
           MAS+ ST++ + S  L+      QG++SQ V+ V    +  S   SQ G           
Sbjct: 1   MASSFSTRL-VQSQNLLPRFHHIQGNFSQDVSKVRRSHVVCSSIRSQLG---------CS 50

Query: 56  RALTSRSHYASSFPIVQLSKAPSVKYRRMFCVNSMAKDVELQAKVTTKVFFDVDIGGKPA 115
           + L SRSHYA+ FP+   S+  S  +RRM C N+    +ELQAKVT+KVFFDV IGG+ A
Sbjct: 51  KTLASRSHYAAKFPVTLKSEGKSTTFRRMTC-NAKESALELQAKVTSKVFFDVTIGGEAA 109

Query: 116 GRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGI 175
           GRIV GLFGDVVPKTAENFRALCT GEKGYG+K C FHRIIKDFMIQGGDFTEG+GTGGI
Sbjct: 110 GRIVFGLFGDVVPKTAENFRALCT-GEKGYGFKDCYFHRIIKDFMIQGGDFTEGNGTGGI 168

Query: 176 SIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGM 235
           SIYG+ FEDE+F LKHVGPGVLSMANAGPNTNGSQFFICTV+TPWLDNRHVVFGHVIDGM
Sbjct: 169 SIYGAKFEDENFSLKHVGPGVLSMANAGPNTNGSQFFICTVQTPWLDNRHVVFGHVIDGM 228

Query: 236 DVVRKLESVETSRTDY-PKVPCRIINSGELPLD 267
           DVVR LES ETSR+D  P+ PC+I NSGELPL+
Sbjct: 229 DVVRTLESQETSRSDNSPRKPCKIANSGELPLE 261

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511613|ref|XP_003626095.1| Peptidyl-prolyl cis-trans isomerase [Medicago truncatula] gi|355501110|gb|AES82313.1| Peptidyl-prolyl cis-trans isomerase [Medicago truncatula]

 Score =  344 bits (882), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 177/269 (65%), Positives = 204/269 (75%), Gaps = 16/269 (5%)

Query: 1   MASTVSTQM-RLHSPALIFQGSYSQGVANVCMLPMTSSITNSQSGHCPASTLKLSGRALT 59
           MA + STQ+ + H+P    QG++SQ   ++    +  S T SQ G+          ++L+
Sbjct: 1   MAFSSSTQLLQSHNPLSNLQGNFSQDALSM----VQRSHTVSQIGY---------SKSLS 47

Query: 60  SRSHYASSFPIVQLSKAPSVKY-RRMFCVNSMAKDVELQAKVTTKVFFDVDIGGKPAGRI 118
            +SH A  F   Q   A S+ Y RR+ C  +     ELQAKVTTK FFDV+ GG+  GRI
Sbjct: 48  LKSHVAFRFSATQQFGARSISYSRRITCAAAAENVQELQAKVTTKCFFDVEAGGESLGRI 107

Query: 119 VMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIY 178
           V+GLFG+V PKT ENFRALCT G+KGYGYKGCSFHRIIK+FMIQGGDFTEG+GTGG+SIY
Sbjct: 108 VLGLFGEVAPKTVENFRALCT-GDKGYGYKGCSFHRIIKEFMIQGGDFTEGNGTGGVSIY 166

Query: 179 GSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVV 238
           GSSFEDESF LKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVV
Sbjct: 167 GSSFEDESFALKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVV 226

Query: 239 RKLESVETSRTDYPKVPCRIINSGELPLD 267
           R LES ETSR D PK PCRI+N GELP+D
Sbjct: 227 RTLESQETSRLDIPKKPCRIVNCGELPID 255

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388510812|gb|AFK43472.1| unknown [Medicago truncatula]

 Score =  344 bits (882), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 177/269 (65%), Positives = 204/269 (75%), Gaps = 16/269 (5%)

Query: 1   MASTVSTQM-RLHSPALIFQGSYSQGVANVCMLPMTSSITNSQSGHCPASTLKLSGRALT 59
           MA + STQ+ + H+P    QG++SQ   ++    +  S T SQ G+          ++L+
Sbjct: 6   MAFSSSTQLLQSHNPLSNLQGNFSQDALSM----VQRSHTVSQIGY---------SKSLS 52

Query: 60  SRSHYASSFPIVQLSKAPSVKY-RRMFCVNSMAKDVELQAKVTTKVFFDVDIGGKPAGRI 118
            +SH A  F   Q   A S+ Y RR+ C  +     ELQAKVTTK FFDV+ GG+  GRI
Sbjct: 53  LKSHVAFRFSATQQFGARSISYSRRITCAAAAENVQELQAKVTTKCFFDVEAGGESLGRI 112

Query: 119 VMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIY 178
           V+GLFG+V PKT ENFRALCT G+KGYGYKGCSFHRIIK+FMIQGGDFTEG+GTGG+SIY
Sbjct: 113 VLGLFGEVAPKTVENFRALCT-GDKGYGYKGCSFHRIIKEFMIQGGDFTEGNGTGGVSIY 171

Query: 179 GSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVV 238
           GSSFEDESF LKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVV
Sbjct: 172 GSSFEDESFALKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVV 231

Query: 239 RKLESVETSRTDYPKVPCRIINSGELPLD 267
           R LES ETSR D PK PCRI+N GELP+D
Sbjct: 232 RTLESQETSRLDIPKKPCRIVNCGELPID 260

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534947|ref|XP_003536012.1| PREDICTED: peptidyl-prolyl cis-trans isomerase, chloroplastic isoform 2 [Glycine max]

 Score =  339 bits (869), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 163/241 (67%), Positives = 192/241 (79%), Gaps = 10/241 (4%)

Query: 28  NVCMLPMTSSITNSQSGHCPASTLKLSGRALTSRSHYASSFPIVQLSKAPSVKYRRMFCV 87
           +V M  +  S T SQ G+         G+ L SRSHYA+ F + + S+A S+ YRRM C 
Sbjct: 22  HVSMTHVVRSSTKSQLGY---------GKTLASRSHYAARFSVSRQSEAKSITYRRMTCT 72

Query: 88  NSMAKDVELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGY 147
           N+    ++LQAKVT K FFDV+IGG+PAGR+V GLFG+ VPKT ENFRALCT GEKGYGY
Sbjct: 73  NAKENVLQLQAKVTNKCFFDVEIGGEPAGRVVFGLFGEDVPKTVENFRALCT-GEKGYGY 131

Query: 148 KGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTN 207
           KG  FHRII++FM+QGGDFTEG+GTGGISIYG SF+DE+F LKHVGPGVLSMANAG NTN
Sbjct: 132 KGSYFHRIIQNFMVQGGDFTEGNGTGGISIYGDSFDDENFNLKHVGPGVLSMANAGTNTN 191

Query: 208 GSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLD 267
           GSQFFICTV+TPWLDNRHVVFGHVIDGMDVVR LES ET + D P+ PC+I +SGELP+D
Sbjct: 192 GSQFFICTVQTPWLDNRHVVFGHVIDGMDVVRTLESQETGKFDNPRKPCKIADSGELPID 251

Query: 268 A 268
           +
Sbjct: 252 S 252

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	268
TAIR|locus:2079507	313	ROC4 "rotamase CYP 4" [Arabido	0.951	0.814	0.600	6.7e-72
TAIR|locus:2179822	259	Pnsl5 "Photosynthetic NDH subc	0.813	0.841	0.528	2.5e-56
UNIPROTKB|P30405	207	PPIF "Peptidyl-prolyl cis-tran	0.518	0.671	0.692	2e-49
ZFIN|ZDB-GENE-040426-1955	216	ppib "peptidylprolyl isomerase	0.682	0.847	0.554	2e-49
MGI|MGI:97750	216	Ppib "peptidylprolyl isomerase	0.664	0.824	0.564	4.1e-49
UNIPROTKB|P45877	212	PPIC "Peptidyl-prolyl cis-tran	0.611	0.773	0.624	5.2e-49
UNIPROTKB|F1NV93	207	PPIB "Peptidyl-prolyl cis-tran	0.664	0.859	0.564	8.5e-49
UNIPROTKB|F1P4M4	223	PPIB "Peptidyl-prolyl cis-tran	0.664	0.798	0.564	8.5e-49
UNIPROTKB|F1RVH5	211	LOC100524880 "Peptidyl-prolyl	0.611	0.777	0.624	8.5e-49
UNIPROTKB|Q08E11	212	PPIC "Peptidyl-prolyl cis-tran	0.611	0.773	0.618	1.1e-48

TAIR|locus:2079507 ROC4 "rotamase CYP 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 727 (261.0 bits), Expect = 6.7e-72, P = 6.7e-72
 Identities = 164/273 (60%), Positives = 190/273 (69%)

Query:     1 MASTVSTQMRLHSPALIFQGSYSQGVANVCMLPMTSSITNSQSGHCPASTLKLSGRALTS 60
             MAS+ S QM +H+   I Q  +  GV +     + S+   +QS  C  +  + SG AL+S
Sbjct:    54 MASSSSMQM-VHTSRSIAQIGF--GVKS----QLVSANRTTQSV-CFGA--RSSGIALSS 103

Query:    61 RSHYASSFPIVQLSKA-PSVKYRRMFCVNSMAKD----VELQAKVTTKVFFDVDIGGKPA 115
             R HYAS  PI Q S    + K++R  CV SMA +    +E QAKVT KV+FDV+IGG+ A
Sbjct:   104 RLHYAS--PIKQFSGVYATTKHQRTACVKSMAAEEEEVIEPQAKVTNKVYFDVEIGGEVA 161

Query:   116 GRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXI 175
             GRIVMGLFG+VVPKT ENFRALCT GEK YGYKG SFHRIIKDFMIQ            I
Sbjct:   162 GRIVMGLFGEVVPKTVENFRALCT-GEKKYGYKGSSFHRIIKDFMIQGGDFTEGNGTGGI 220

Query:   176 SIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGM 235
             SIYG+ FEDE+F LKH GPG+LSMANAGPNTNGSQFFICTVKT WLDN+HVVFG VI+GM
Sbjct:   221 SIYGAKFEDENFTLKHTGPGILSMANAGPNTNGSQFFICTVKTSWLDNKHVVFGQVIEGM 280

Query:   236 DVVRKLESVETSRTDYPKVPCRIINSGELPLDA 268
              +VR LES ET   D PK  CRI   GELPLDA
Sbjct:   281 KLVRTLESQETRAFDVPKKGCRIYACGELPLDA 313

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;ISS;IDA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP;RCA

GO:0048046 "apoplast" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0009642 "response to light intensity" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0010555 "response to mannitol stimulus" evidence=IMP

GO:0019344 "cysteine biosynthetic process" evidence=RCA;IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045036 "protein targeting to chloroplast" evidence=IDA;RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0007165 "signal transduction" evidence=ISS

TAIR|locus:2179822 Pnsl5 "Photosynthetic NDH subcomplex L 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
 Identities = 120/227 (52%), Positives = 154/227 (67%)

Query:    48 ASTLKLSGRALTSRSHYASSFPIVQLSKAPSVKY----RRMFCVNSMAKDV-ELQAKVTT 102
             +++ +L  ++      ++SS P    S      Y     R F V S A+ V E Q+K+T 
Sbjct:    31 STSFRLRTKSSFDSISFSSSTPFSASSLLLHTSYTKRNHRCFSVQSNAEVVTEPQSKITH 90

Query:   103 KVFFDVDIG---GKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDF 159
             KV+FD+ +G   GK AGRIV+GL+GD VP+T ENFRALCT GEKG+GYKG +FHR+I+DF
Sbjct:    91 KVYFDISVGNPVGKLAGRIVIGLYGDDVPQTVENFRALCT-GEKGFGYKGSTFHRVIRDF 149

Query:   160 MIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 219
             MIQ             S+YG +F+DE+F L HVGPGVLSMANAGPNTNGSQFFICT+KT 
Sbjct:   150 MIQGGDFEKGNGTGGKSVYGRTFKDENFKLSHVGPGVLSMANAGPNTNGSQFFICTIKTS 209

Query:   220 WLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPL 266
             WLD RHVVFG VI+GM+VV+ +E  ET R D P+    I + G+LP+
Sbjct:   210 WLDGRHVVFGQVIEGMEVVKLIEEQETDRGDRPRKKVVIADCGQLPM 256

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;ISS;IMP

GO:0005739 "mitochondrion" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0043424 "protein histidine kinase binding" evidence=IPI

GO:0009533 "chloroplast stromal thylakoid" evidence=IDA

GO:0010275 "NAD(P)H dehydrogenase complex assembly" evidence=IMP

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

UNIPROTKB|P30405 PPIF "Peptidyl-prolyl cis-trans isomerase F, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
 Identities = 97/140 (69%), Positives = 109/140 (77%)

Query:   104 VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQX 163
             V+ DVD  GKP GR+V+ L  DVVPKTAENFRALCT GEKG+GYKG +FHR+I  FM Q 
Sbjct:    48 VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCT-GEKGFGYKGSTFHRVIPSFMCQA 106

Query:   164 XXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDN 223
                         SIYGS F DE+F LKHVGPGVLSMANAGPNTNGSQFFICT+KT WLD 
Sbjct:   107 GDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDG 166

Query:   224 RHVVFGHVIDGMDVVRKLES 243
             +HVVFGHV +GMDVV+K+ES
Sbjct:   167 KHVVFGHVKEGMDVVKKIES 186

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0008637 "apoptotic mitochondrial changes" evidence=IEA

GO:0016018 "cyclosporin A binding" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS

GO:2001243 "negative regulation of intrinsic apoptotic signaling pathway" evidence=IMP

GO:0043066 "negative regulation of apoptotic process" evidence=IDA

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=IDA

GO:0010940 "positive regulation of necrotic cell death" evidence=IMP

GO:0070301 "cellular response to hydrogen peroxide" evidence=IMP

GO:0002931 "response to ischemia" evidence=ISS

GO:0071277 "cellular response to calcium ion" evidence=ISS

GO:0090200 "positive regulation of release of cytochrome c from mitochondria" evidence=ISS

GO:0046902 "regulation of mitochondrial membrane permeability" evidence=ISS

GO:0010849 "regulation of proton-transporting ATPase activity, rotational mechanism" evidence=ISS

GO:0032780 "negative regulation of ATPase activity" evidence=ISS

GO:0071243 "cellular response to arsenic-containing substance" evidence=ISS

GO:0090324 "negative regulation of oxidative phosphorylation" evidence=ISS

GO:2000276 "negative regulation of oxidative phosphorylation uncoupler activity" evidence=ISS

GO:0016020 "membrane" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

ZFIN|ZDB-GENE-040426-1955 ppib "peptidylprolyl isomerase B (cyclophilin B)" [Danio rerio (taxid:7955)]

 Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
 Identities = 102/184 (55%), Positives = 127/184 (69%)

Query:    84 MFCVNSMAKDVELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEK 143
             +F   + A + +   KVT KV+FD+ IG + AGRIV+GLFG  VPKT ENF  L T GEK
Sbjct:    26 LFPSETEADEKKKGPKVTAKVYFDIKIGDEDAGRIVIGLFGKTVPKTTENFLQLAT-GEK 84

Query:   144 GYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAG 203
             G+GYKG  FHR+IKDFMIQ             SIYG  F DE+F LKH GPG LSMANAG
Sbjct:    85 GFGYKGSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGDRFPDENFKLKHYGPGWLSMANAG 144

Query:   204 PNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGE 263
              +TNGSQFFI TV+TPWLD +HVVFG +++GMDVVRK+E+ +T   D P     I +SG+
Sbjct:   145 KDTNGSQFFITTVQTPWLDGKHVVFGKILEGMDVVRKIEATKTDGRDKPLKDVSIHDSGK 204

Query:   264 LPLD 267
             + ++
Sbjct:   205 IDVE 208

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016853 "isomerase activity" evidence=IEA

MGI|MGI:97750 Ppib "peptidylprolyl isomerase B" [Mus musculus (taxid:10090)]

 Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
 Identities = 101/179 (56%), Positives = 124/179 (69%)

Query:    89 SMAKDVELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYK 148
             S+A D +   KVT KV+FD+ IG +  GR+V GLFG  VPKT +NF AL T GEKG+GYK
Sbjct:    31 SVANDKKKGPKVTVKVYFDLQIGDESVGRVVFGLFGKTVPKTVDNFVALAT-GEKGFGYK 89

Query:   149 GCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNG 208
                FHR+IKDFMIQ             SIYG  F DE+F LKH GPG +SMANAG +TNG
Sbjct:    90 NSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNG 149

Query:   209 SQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLD 267
             SQFFI TVKT WLD +HVVFG V++GMDVVRK+ES +T   D P     I++SG++ ++
Sbjct:   150 SQFFITTVKTSWLDGKHVVFGKVLEGMDVVRKVESTKTDSRDKPLKDVIIVDSGKIEVE 208

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0042277 "peptide binding" evidence=IEA

UNIPROTKB|P45877 PPIC "Peptidyl-prolyl cis-trans isomerase C" [Homo sapiens (taxid:9606)]

 Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
 Identities = 103/165 (62%), Positives = 114/165 (69%)

Query:   100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDF 159
             VT KVFFDV IG K  GRIV+GLFG VVPKT ENF AL T GEKGYGYKG  FHR+IKDF
Sbjct:    36 VTAKVFFDVRIGDKDVGRIVIGLFGKVVPKTVENFVALAT-GEKGYGYKGSKFHRVIKDF 94

Query:   160 MIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 219
             MIQ            +SIYG +F DE+F LKH G G +SMANAGP+TNGSQFFI   K  
Sbjct:    95 MIQGGDITTGDGTGGVSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPT 154

Query:   220 WLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
             WLD +HVVFG VIDGM VV  +E   T   D P   C IINSG++
Sbjct:   155 WLDGKHVVFGKVIDGMTVVHSIELQATDGHDRPLTNCSIINSGKI 199

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=TAS

GO:0007165 "signal transduction" evidence=TAS

GO:0016018 "cyclosporin A binding" evidence=TAS

UNIPROTKB|F1NV93 PPIB "Peptidyl-prolyl cis-trans isomerase" [Gallus gallus (taxid:9031)]

 Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
 Identities = 101/179 (56%), Positives = 124/179 (69%)

Query:    89 SMAKDVELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYK 148
             S A + +   KVT KVFFD+ +G + AGR+V+GLFG  VPKT ENF AL T GEKG+G+K
Sbjct:    22 SRADERKKGPKVTAKVFFDLRVGEEDAGRVVIGLFGKTVPKTVENFVALAT-GEKGFGFK 80

Query:   149 GCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNG 208
             G  FHR+IKDFMIQ             SIYG  F DE+F LKH GPG +SMANAG +TNG
Sbjct:    81 GSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGDRFPDENFKLKHYGPGWVSMANAGKDTNG 140

Query:   209 SQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLD 267
             SQFFI TVKTPWLD +HVVFG V++GMDVVRK+E+ +T   D P     I + G + ++
Sbjct:   141 SQFFITTVKTPWLDGKHVVFGKVLEGMDVVRKVENTKTDSRDKPLKDVTIADCGTIEVE 199

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

UNIPROTKB|F1P4M4 PPIB "Peptidyl-prolyl cis-trans isomerase" [Gallus gallus (taxid:9031)]

 Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
 Identities = 101/179 (56%), Positives = 124/179 (69%)

Query:    89 SMAKDVELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYK 148
             S A + +   KVT KVFFD+ +G + AGR+V+GLFG  VPKT ENF AL T GEKG+G+K
Sbjct:    38 SRADERKKGPKVTAKVFFDLRVGEEDAGRVVIGLFGKTVPKTVENFVALAT-GEKGFGFK 96

Query:   149 GCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNG 208
             G  FHR+IKDFMIQ             SIYG  F DE+F LKH GPG +SMANAG +TNG
Sbjct:    97 GSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGDRFPDENFKLKHYGPGWVSMANAGKDTNG 156

Query:   209 SQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLD 267
             SQFFI TVKTPWLD +HVVFG V++GMDVVRK+E+ +T   D P     I + G + ++
Sbjct:   157 SQFFITTVKTPWLDGKHVVFGKVLEGMDVVRKVENTKTDSRDKPLKDVTIADCGTIEVE 215

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

UNIPROTKB|F1RVH5 LOC100524880 "Peptidyl-prolyl cis-trans isomerase" [Sus scrofa (taxid:9823)]

 Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
 Identities = 103/165 (62%), Positives = 114/165 (69%)

Query:   100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDF 159
             VT KVFFDV IG K  GRIV+GLFG VVPKT ENF AL T GE+GYGYKG  FHR+IKDF
Sbjct:    35 VTAKVFFDVRIGDKDVGRIVIGLFGKVVPKTVENFIALAT-GERGYGYKGSKFHRVIKDF 93

Query:   160 MIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 219
             MIQ            ISIYG +F DE+F LKH G G +SMANAGP+TNGSQFFI   K  
Sbjct:    94 MIQGGDFTHGDGTGGISIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPT 153

Query:   220 WLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
             WLD +HVVFG VIDGM VV  +E   T   D P   C IINSG++
Sbjct:   154 WLDGKHVVFGKVIDGMTVVHSIELQATDGHDRPLTDCSIINSGKI 198

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|Q08E11 PPIC "Peptidyl-prolyl cis-trans isomerase C" [Bos taurus (taxid:9913)]

 Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
 Identities = 102/165 (61%), Positives = 114/165 (69%)

Query:   100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDF 159
             VT KVFFDV IG K  GRIV+GLFG VVPKT ENF AL T GEKGYGYKG  FHR+IKDF
Sbjct:    36 VTAKVFFDVRIGDKDVGRIVIGLFGKVVPKTVENFVALAT-GEKGYGYKGSKFHRVIKDF 94

Query:   160 MIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 219
             MIQ            ISIYG +F DE+F LKH G G +SMANAGP+TNGSQFFI   K  
Sbjct:    95 MIQGGDFTRGDGTGGISIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPT 154

Query:   220 WLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
             WLD +HVVFG V+DGM VV  +E   T   D P   C I+NSG++
Sbjct:   155 WLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPFTDCSIVNSGKI 199

GO:0005737 "cytoplasm" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0042277 "peptide binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q41651	CYPB_VICFA	5, ., 2, ., 1, ., 8	0.7089	0.7835	0.8467	N/A	no
P0CP78	PPIB_CRYNJ	5, ., 2, ., 1, ., 8	0.7225	0.6268	0.7272	yes	no
P0CP79	PPIB_CRYNB	5, ., 2, ., 1, ., 8	0.7225	0.6268	0.7272	N/A	no
Q9TW32	PPIB_DICDI	5, ., 2, ., 1, ., 8	0.6284	0.6492	0.8832	yes	no
Q8X166	PPIB_ASPNG	5, ., 2, ., 1, ., 8	0.6506	0.6156	0.7783	yes	no
P34791	CP20C_ARATH	5, ., 2, ., 1, ., 8	0.6190	0.9514	0.9807	yes	no
O94273	PPIB_SCHPO	5, ., 2, ., 1, ., 8	0.6325	0.6156	0.8208	yes	no
Q6C4W6	PPIB_YARLI	5, ., 2, ., 1, ., 8	0.6184	0.6417	0.7543	yes	no
P52013	CYP5_CAEEL	5, ., 2, ., 1, ., 8	0.6568	0.6268	0.8235	yes	no
P45877	PPIC_HUMAN	5, ., 2, ., 1, ., 8	0.6848	0.6119	0.7735	yes	no
Q4I5R9	PPIB_GIBZE	5, ., 2, ., 1, ., 8	0.6071	0.6231	0.6733	yes	no
Q4WP12	PPIB_ASPFU	5, ., 2, ., 1, ., 8	0.6385	0.6156	0.7894	yes	no
Q08E11	PPIC_BOVIN	5, ., 2, ., 1, ., 8	0.6848	0.6119	0.7735	yes	no
Q5B4R3	PPIB_EMENI	5, ., 2, ., 1, ., 8	0.6176	0.6305	0.7897	yes	no
P24369	PPIB_MOUSE	5, ., 2, ., 1, ., 8	0.6256	0.6641	0.8240	yes	no
P24368	PPIB_RAT	5, ., 2, ., 1, ., 8	0.6145	0.6641	0.8240	yes	no
P24367	PPIB_CHICK	5, ., 2, ., 1, ., 8	0.6201	0.6641	0.8599	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.2.1	0.976
4th Layer	5.2.1.8	0.991

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_II1684 hypothetical protein; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity) (266 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	268
cd01926	164	cd01926, cyclophilin_ABH_like, cyclophilin_ABH_lik	1e-107
PLN03149	186	PLN03149, PLN03149, peptidyl-prolyl isomerase H (c	6e-85
PTZ00060	183	PTZ00060, PTZ00060, cyclophilin; Provisional	2e-77
cd00317	146	cd00317, cyclophilin, cyclophilin: cyclophilin-typ	2e-66
COG0652	158	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase	4e-64
cd01927	148	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclo	1e-62
pfam00160	144	pfam00160, Pro_isomerase, Cyclophilin type peptidy	4e-62
cd01923	159	cd01923, cyclophilin_RING, cyclophilin_RING: cyclo	5e-50
cd01928	153	cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3	4e-49
cd01922	146	cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCY	9e-49
cd01925	171	cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeC	5e-37
cd01921	166	cd01921, cyclophilin_RRM, cyclophilin_RRM: cycloph	1e-29
PTZ00221	249	PTZ00221, PTZ00221, cyclophilin; Provisional	1e-27
cd01920	155	cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP	4e-22
PRK10791	164	PRK10791, PRK10791, peptidyl-prolyl cis-trans isom	1e-16
cd01924	176	cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40	9e-13
PRK10903	190	PRK10903, PRK10903, peptidyl-prolyl cis-trans isom	9e-11

>gnl|CDD|238907 cd01926, cyclophilin_ABH_like, cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain

 Score =  306 bits (785), Expect = e-107
 Identities = 116/165 (70%), Positives = 132/165 (80%), Gaps = 7/165 (4%)

Query: 103 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKG-----YGYKGCSFHRIIK 157
           KVFFD+ IGG+PAGRIVM LF DVVPKTAENFRALCT GEKG     +GYKG +FHR+I 
Sbjct: 2   KVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCT-GEKGKGGKPFGYKGSTFHRVIP 60

Query: 158 DFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVK 217
           DFMIQGGDFT G+GTGG SIYG  F DE+F LKH GPG+LSMANAGPNTNGSQFFI TVK
Sbjct: 61  DFMIQGGDFTRGNGTGGKSIYGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFITTVK 120

Query: 218 TPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSG 262
           TPWLD +HVVFG V++GMDVV+K+E+V +     PK    I + G
Sbjct: 121 TPWLDGKHVVFGKVVEGMDVVKKIENVGSGN-GKPKKKVVIADCG 164

This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the splicesome. Length = 164

>gnl|CDD|178694 PLN03149, PLN03149, peptidyl-prolyl isomerase H (cyclophilin H); Provisional

 Score =  251 bits (642), Expect = 6e-85
 Identities = 107/166 (64%), Positives = 123/166 (74%), Gaps = 5/166 (3%)

Query: 104 VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTA----GEKGYGYKGCSFHRIIKDF 159
           VFFDV IGG PAGRI M LF D+ PKTAENFR  CT          GYKGC FHR+IKDF
Sbjct: 21  VFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDF 80

Query: 160 MIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 219
           MIQGGDF +GDGTG +SIYGS FEDE+F+ KH GPG+LSMAN+GPNTNG QFFI   K  
Sbjct: 81  MIQGGDFLKGDGTGCVSIYGSKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCD 140

Query: 220 WLDNRHVVFGHVI-DGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
           WLDN+HVVFG V+ DG+ VVRK+E+V T   + PK+ C I   GE+
Sbjct: 141 WLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVISECGEM 186

Length = 186

>gnl|CDD|240249 PTZ00060, PTZ00060, cyclophilin; Provisional

 Score =  232 bits (593), Expect = 2e-77
 Identities = 104/167 (62%), Positives = 116/167 (69%), Gaps = 6/167 (3%)

Query: 103 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYG-----YKGCSFHRIIK 157
           KVFFD+ I   PAGRIV  LF DV PKTAENFRALC   + G       YKG  FHRII 
Sbjct: 17  KVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHYKGSIFHRIIP 76

Query: 158 DFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVK 217
            FM QGGD T  +GTGG SIYG  F DE+F LKH  PG+LSMANAGPNTNGSQFFI TV 
Sbjct: 77  QFMCQGGDITNHNGTGGESIYGRKFTDENFKLKHDQPGLLSMANAGPNTNGSQFFITTVP 136

Query: 218 TPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
            PWLD +HVVFG VI+GM+VVR +E   T  + YPK P  + + GEL
Sbjct: 137 CPWLDGKHVVFGKVIEGMEVVRAMEKEGTQ-SGYPKKPVVVTDCGEL 182

Length = 183

>gnl|CDD|238194 cd00317, cyclophilin, cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases

 Score =  202 bits (516), Expect = 2e-66
 Identities = 78/146 (53%), Positives = 90/146 (61%), Gaps = 7/146 (4%)

Query: 116 GRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGI 175
           GRIV+ L+GD  PKT ENF +L   G     Y G +FHR+I  FMIQGGD T   G G  
Sbjct: 7   GRIVIELYGDEAPKTVENFLSLARGG----FYDGTTFHRVIPGFMIQGGDPTGTGGGGSG 62

Query: 176 SIYGSSFEDESFVLK-HVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDG 234
             Y   F DE+F LK H   G LSMANAGPNTNGSQFFI T  TP LD +H VFG V++G
Sbjct: 63  PGY--KFPDENFPLKYHHRRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEG 120

Query: 235 MDVVRKLESVETSRTDYPKVPCRIIN 260
           MDVV K+E  +T     P  P  I +
Sbjct: 121 MDVVDKIERGDTDENGRPIKPVTISD 146

This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP, whose isomerization or chaperoning activities may play a role in RNA splicing. . Length = 146

>gnl|CDD|223725 COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]

 Score =  197 bits (503), Expect = 4e-64
 Identities = 72/163 (44%), Positives = 91/163 (55%), Gaps = 14/163 (8%)

Query: 110 IGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEG 169
           I     G I + L+ D  PKT  NF  L   G     Y G  FHR+I  FMIQGGD T G
Sbjct: 3   ILETNKGDITIELYPDKAPKTVANFLQLVKEG----FYDGTIFHRVIPGFMIQGGDPTGG 58

Query: 170 DGTGGISIYGSSFEDESFVLKH--VGPGVLSMANAG-PNTNGSQFFICTVKTPWLDNRHV 226
           DGTGG       F+DE+F L       G LSMA AG PN+NGSQFFI  V  P+LD ++ 
Sbjct: 59  DGTGGPGP---PFKDENFALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYT 115

Query: 227 VFGHVIDGMDVVRKLESVET----SRTDYPKVPCRIINSGELP 265
           VFG V++GMDVV K+++ +T       D P  P +I++   + 
Sbjct: 116 VFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVKILSVKIVE 158

Length = 158

>gnl|CDD|238908 cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain

 Score =  193 bits (492), Expect = 1e-62
 Identities = 87/146 (59%), Positives = 100/146 (68%), Gaps = 6/146 (4%)

Query: 116 GRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGI 175
           G I + LF +  PKT ENF    T    GY Y    FHR+IK FMIQ GD T GDGTGG 
Sbjct: 7   GDIHIRLFPEEAPKTVENF---TTHARNGY-YNNTIFHRVIKGFMIQTGDPT-GDGTGGE 61

Query: 176 SIYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDG 234
           SI+G  FEDE S  LKH  P  LSMANAGPNTNGSQFFI TV TPWLDN+H VFG V+ G
Sbjct: 62  SIWGKEFEDEFSPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKG 121

Query: 235 MDVVRKLESVETSRTDYPKVPCRIIN 260
           MDVV+++E+V+T + D P    +IIN
Sbjct: 122 MDVVQRIENVKTDKNDRPYEDIKIIN 147

This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known. Length = 148

>gnl|CDD|215759 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

 Score =  191 bits (488), Expect = 4e-62
 Identities = 72/156 (46%), Positives = 84/156 (53%), Gaps = 13/156 (8%)

Query: 105 FFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGG 164
           F D+       GRIV+ LFGD  PKT ENF +LC  G     Y G  FHR+I  FMIQGG
Sbjct: 1   FLDITTN---LGRIVIELFGDEAPKTVENFLSLCKKG----FYDGTIFHRVIPGFMIQGG 53

Query: 165 DFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNR 224
           D T     G  SI      DE         G LSMA +GPN+ GSQFFI     P LD  
Sbjct: 54  DPTGPGTGGKRSI-----PDEFVSKLKHKRGTLSMARSGPNSAGSQFFITLGDAPHLDGG 108

Query: 225 HVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIIN 260
           + VFG V++GMDVV K+E VET   D P    +I +
Sbjct: 109 YTVFGRVVEGMDVVEKIEKVETD-GDRPLKDVKITS 143

The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyze peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilised in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function. Length = 144

>gnl|CDD|238904 cd01923, cyclophilin_RING, cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain

 Score =  161 bits (409), Expect = 5e-50
 Identities = 74/148 (50%), Positives = 92/148 (62%), Gaps = 8/148 (5%)

Query: 116 GRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGI 175
           G + + L  D  PK  ENF  LC   +KGY Y G  FHR I++FMIQGGD T G G GG 
Sbjct: 9   GDLNLELHCDKAPKACENFIKLC---KKGY-YDGTIFHRSIRNFMIQGGDPT-GTGRGGE 63

Query: 176 SIYGSSFEDESFV--LKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVID 233
           SI+G  F+DE F   L H G GVLSMAN+GPNTNGSQFFI       LD +H VFG V+ 
Sbjct: 64  SIWGKPFKDE-FKPNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVG 122

Query: 234 GMDVVRKLESVETSRTDYPKVPCRIINS 261
           G++ +  +E+V    TD PK   +I ++
Sbjct: 123 GLETLEAMENVPDPGTDRPKEEIKIEDT 150

This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination. Length = 159

>gnl|CDD|238909 cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3_like

 Score =  159 bits (403), Expect = 4e-49
 Identities = 75/144 (52%), Positives = 86/144 (59%), Gaps = 6/144 (4%)

Query: 116 GRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGI 175
           G I + LF D  PK  ENF ALC +G     Y GC FHR IK FM+Q GD T G G GG 
Sbjct: 10  GDIKIELFCDDCPKACENFLALCASGY----YNGCIFHRNIKGFMVQTGDPT-GTGKGGE 64

Query: 176 SIYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDG 234
           SI+G  FEDE    LKH   GV+SMAN GPNTNGSQFFI   K P LD ++ VFG VIDG
Sbjct: 65  SIWGKKFEDEFRETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDG 124

Query: 235 MDVVRKLESVETSRTDYPKVPCRI 258
            + +  LE +   +   P    RI
Sbjct: 125 FETLDTLEKLPVDKKYRPLEEIRI 148

Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known. Length = 153

>gnl|CDD|238903 cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2

 Score =  158 bits (400), Expect = 9e-49
 Identities = 79/145 (54%), Positives = 93/145 (64%), Gaps = 7/145 (4%)

Query: 116 GRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGI 175
           G I + L+ +  PKT +NF  L     +GY Y G  FHR+IKDFMIQGGD T G G GG 
Sbjct: 7   GEITLELYWNHAPKTCKNFYELAK---RGY-YNGTIFHRLIKDFMIQGGDPT-GTGRGGA 61

Query: 176 SIYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDG 234
           SIYG  FEDE    LKH G G+LSMANAGPNTNGSQFFI    TPWLD +H +FG V  G
Sbjct: 62  SIYGKKFEDEIHPELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKG 121

Query: 235 MDVVRKLESVETSRTDYPKVPCRII 259
           M V+  +  V+T  TD P    +I+
Sbjct: 122 MKVIENMVEVQTQ-TDRPIDEVKIL 145

These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling. Length = 146

>gnl|CDD|238906 cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16

 Score =  128 bits (324), Expect = 5e-37
 Identities = 67/157 (42%), Positives = 88/157 (56%), Gaps = 9/157 (5%)

Query: 115 AGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGG 174
           AG I + L+    PK   NF  LC    +GY Y    FHR++  F+IQGGD T G GTGG
Sbjct: 14  AGDIDIELWSKEAPKACRNFIQLCL---EGY-YDNTIFHRVVPGFIIQGGDPT-GTGTGG 68

Query: 175 ISIYGSSFEDESFV-LKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVI- 232
            SIYG  F+DE    L+    G++ MANAG ++NGSQFF    K   L+N+H +FG V  
Sbjct: 69  ESIYGEPFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTG 128

Query: 233 DGMDVVRKLESVETSRTDYPKVPCRIINS--GELPLD 267
           D +  + KL  VET + + P  P +I +    E P D
Sbjct: 129 DTIYNLLKLAEVETDKDERPVYPPKITSVEVLENPFD 165

C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding. Length = 171

>gnl|CDD|238902 cd01921, cyclophilin_RRM, cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)

 Score =  108 bits (273), Expect = 1e-29
 Identities = 58/136 (42%), Positives = 73/136 (53%), Gaps = 16/136 (11%)

Query: 116 GRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGI 175
           G +V+ LF D  P    NF  LC    K   Y  C F+ + KDF+ Q GD T G G GG 
Sbjct: 7   GDLVIDLFTDECPLACLNFLKLC----KLKYYNFCLFYNVQKDFIAQTGDPT-GTGAGGE 61

Query: 176 SIYGSS-------FEDESFV--LKHVGPGVLSMANAGPNTNGSQFFICTVK-TPWLDNRH 225
           SIY          FE E  +  LKH   G +SM NAG N NGSQF+I   +   +LD +H
Sbjct: 62  SIYSQLYGRQARFFEPE-ILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKH 120

Query: 226 VVFGHVIDGMDVVRKL 241
            VFG V++G DV+ K+
Sbjct: 121 TVFGQVVEGFDVLEKI 136

This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis. Length = 166

>gnl|CDD|140248 PTZ00221, PTZ00221, cyclophilin; Provisional

 Score =  106 bits (266), Expect = 1e-27
 Identities = 59/173 (34%), Positives = 87/173 (50%), Gaps = 14/173 (8%)

Query: 101 TTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKG--------YGYKGCSF 152
           + + F D+ IG   AGR+V  LF DVVP+T ENFRAL T G  G          Y     
Sbjct: 52  SCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALIT-GSCGIDTNTGVKLDYLYTPV 110

Query: 153 HRI-IKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQF 211
           H +   + +I  G+      +  +S  G+   DE +  +H   G+L+M + GP+T+GS F
Sbjct: 111 HHVDRNNNIIVLGELD----SFNVSSTGTPIADEGYRHRHTERGLLTMISEGPHTSGSVF 166

Query: 212 FICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
            I    +P LD + VVFG  +D + ++ KLES+       P +P  +   G L
Sbjct: 167 GITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDVGRPLLPVTVSFCGAL 219

Length = 249

>gnl|CDD|238901 cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E

 Score = 89.4 bits (222), Expect = 4e-22
 Identities = 54/149 (36%), Positives = 70/149 (46%), Gaps = 16/149 (10%)

Query: 115 AGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGG 174
            G IV+ L+ D  P T ENF A    G     Y    FHR+I  F+IQGG FT       
Sbjct: 6   LGDIVVELYDDKAPITVENFLAYVRKGF----YDNTIFHRVISGFVIQGGGFTPD---LA 58

Query: 175 ISIYGSSFEDES-FVLKHVGPGVLSMA-NAGPNTNGSQFFICTVKTPWLDNR-----HVV 227
                   ++E+   L +   G ++MA    P++  SQFFI       LD +     + V
Sbjct: 59  QKETLKPIKNEAGNGLSNTR-GTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTV 117

Query: 228 FGHVIDGMDVVRKLESVET-SRTDYPKVP 255
           FG V +GMDVV K+  VET S   Y  VP
Sbjct: 118 FGEVTEGMDVVDKIAGVETYSFGSYQDVP 146

coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding. Length = 155

>gnl|CDD|182734 PRK10791, PRK10791, peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional

 Score = 74.9 bits (184), Expect = 1e-16
 Identities = 51/151 (33%), Positives = 70/151 (46%), Gaps = 20/151 (13%)

Query: 116 GRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGI 175
           G IV+  F D  P+T +NF   C  G     Y    FHR+I  FMIQGG F  G      
Sbjct: 9   GDIVIKTFDDKAPETVKNFLDYCREG----FYNNTIFHRVINGFMIQGGGFEPGMKQKAT 64

Query: 176 SIYGSSFEDESFVLKHVGPGVLSMANAG-PNTNGSQFFICTVKTPWLDNR--------HV 226
                  ++E+        G L+MA    P++  +QFFI  V   +L+          + 
Sbjct: 65  K---EPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYC 121

Query: 227 VFGHVIDGMDVVRKLESVETSRT----DYPK 253
           VF  V++GMDVV K++ V T R+    D PK
Sbjct: 122 VFAEVVEGMDVVDKIKGVATGRSGMHQDVPK 152

Length = 164

>gnl|CDD|238905 cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40

 Score = 64.4 bits (157), Expect = 9e-13
 Identities = 46/162 (28%), Positives = 71/162 (43%), Gaps = 44/162 (27%)

Query: 117 RIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGIS 176
            IV  L G   P TA NF  L    E+G+ Y G  FHR+   F++Q GD  +G   G   
Sbjct: 10  TIV--LDGYNAPVTAGNFVDLV---ERGF-YDGMEFHRVEGGFVVQTGD-PQGKNPGFPD 62

Query: 177 ---------------------IYGSS------FEDESFVLKHVGPGVLSMANA--GPNTN 207
                                +YG +      ++++  +  +   G ++MA     PN+ 
Sbjct: 63  PETGKSRTIPLEIKPEGQKQPVYGKTLEEAGRYDEQPVLPFNA-FGAIAMARTEFDPNSA 121

Query: 208 GSQFFI-------CTVKTPWLDNRHVVFGHVIDGMDVVRKLE 242
            SQFF           +   LD R+ VFG+V DG+D++R+L+
Sbjct: 122 SSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTDGLDILRELK 163

Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation. Length = 176

>gnl|CDD|182824 PRK10903, PRK10903, peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional

 Score = 59.5 bits (144), Expect = 9e-11
 Identities = 48/152 (31%), Positives = 67/152 (44%), Gaps = 14/152 (9%)

Query: 115 AGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGG 174
           AG I + L     P + +NF     +G     Y   +FHR+I  FMIQGG FTE      
Sbjct: 37  AGNIELELNSQKAPVSVKNFVDYVNSGF----YNNTTFHRVIPGFMIQGGGFTEQMQQKK 92

Query: 175 ISIYGSSFEDESFVLKHVGPGVLSMA-NAGPNTNGSQFFICTVKTPWLDNR-----HVVF 228
            +    +  D          G ++MA  A  ++  SQFFI      +LD+      + VF
Sbjct: 93  PNPPIKNEADNGLRNTR---GTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVF 149

Query: 229 GHVIDGMDVVRKLESVETSRTD-YPKVPCRII 259
           G V+ GMDV  K+  V T     Y  VP + +
Sbjct: 150 GKVVKGMDVADKISQVPTHDVGPYQNVPSKPV 181

Length = 190

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	268
KOG0880	217	consensus Peptidyl-prolyl cis-trans isomerase [Pos	100.0
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	100.0
KOG0879	177	consensus U-snRNP-associated cyclophilin type pept	100.0
cd01926	164	cyclophilin_ABH_like cyclophilin_ABH_like: Cycloph	100.0
PLN03149	186	peptidyl-prolyl isomerase H (cyclophilin H); Provi	100.0
KOG0111	298	consensus Cyclophilin-type peptidyl-prolyl cis-tra	100.0
PTZ00221	249	cyclophilin; Provisional	100.0
PTZ00060	183	cyclophilin; Provisional	100.0
KOG0881	164	consensus Cyclophilin type peptidyl-prolyl cis-tra	100.0
COG0652	158	PpiB Peptidyl-prolyl cis-trans isomerase (rotamase	100.0
cd01923	159	cyclophilin_RING cyclophilin_RING: cyclophilin-typ	100.0
cd01928	153	Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Pro	100.0
cd01927	148	cyclophilin_WD40 cyclophilin_WD40: cyclophilin-typ	100.0
cd01921	166	cyclophilin_RRM cyclophilin_RRM: cyclophilin-type	100.0
cd01922	146	cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: c	100.0
cd01925	171	cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like:	100.0
KOG0883	518	consensus Cyclophilin type, U box-containing pepti	100.0
PRK10903	190	peptidyl-prolyl cis-trans isomerase A (rotamase A)	100.0
PRK10791	164	peptidyl-prolyl cis-trans isomerase B (rotamase B)	100.0
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	100.0
KOG0865	167	consensus Cyclophilin type peptidyl-prolyl cis-tra	100.0
cd01920	155	cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyc	100.0
KOG0884	161	consensus Similar to cyclophilin-type peptidyl-pro	100.0
PF00160	155	Pro_isomerase: Cyclophilin type peptidyl-prolyl ci	100.0
cd00317	146	cyclophilin cyclophilin: cyclophilin-type peptidyl	100.0
cd01924	176	cyclophilin_TLP40_like cyclophilin_TLP40_like: cyc	100.0
KOG0885	439	consensus Peptidyl-prolyl cis-trans isomerase [Pos	100.0
KOG0415	479	consensus Predicted peptidyl prolyl cis-trans isom	100.0
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	97.32
TIGR03268	503	methan_mark_3 putative methanogenesis marker prote	96.87
PRK00969	508	hypothetical protein; Provisional	96.85
COG4070	512	Predicted peptidyl-prolyl cis-trans isomerase (rot	96.57
TIGR03268	503	methan_mark_3 putative methanogenesis marker prote	96.13
COG4070	512	Predicted peptidyl-prolyl cis-trans isomerase (rot	95.64
PRK00969	508	hypothetical protein; Provisional	95.55
PF12903	147	DUF3830: Protein of unknown function (DUF3830); In	93.9

>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.1e-58  Score=393.36  Aligned_cols=174  Identities=70%  Similarity=1.175  Sum_probs=170.1

Q ss_pred             ccccccccceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCC
Q 024387           94 VELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTG  173 (268)
Q Consensus        94 ~~~~~~~~~~v~fDi~i~~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~g  173 (268)
                      .+.+|++|++|||||+++++..|||+|+||++.+|+||+||.+||..+.+++||.|+.||||+|||||||||++.++|+|
T Consensus        32 ~~~~p~vT~kV~fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~gY~gS~FhRVi~nfmIQGGd~t~g~gtG  111 (217)
T KOG0880|consen   32 YEPGPKVTHKVYFDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYGYKGSKFHRVIPNFMIQGGDFTKGDGTG  111 (217)
T ss_pred             cCCCCcceeEEEEEEEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCcccCCceeeeeecCceeecCccccCCCCC
Confidence            36788999999999999999999999999999999999999999998899999999999999999999999999999999


Q ss_pred             CccccCCCCCCCccccccCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCCCCCCCC
Q 024387          174 GISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPK  253 (268)
Q Consensus       174 g~s~~g~~~~de~~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td~~~~P~  253 (268)
                      +.++||+.|+|||+.++|+++|.|||||.|||+||||||||+...+||||+|+|||+|++|||+|.+|+..+||++++|.
T Consensus       112 g~SIyG~~F~DENf~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~~dkP~  191 (217)
T KOG0880|consen  112 GKSIYGEKFPDENFKLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENVKTDERDKPL  191 (217)
T ss_pred             CeEeecCCCCCccceeecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeehhhHHHHHHHHhcccCCCCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEeeeEecCC
Q 024387          254 VPCRIINSGELPLD  267 (268)
Q Consensus       254 ~~I~I~~cGvL~~~  267 (268)
                      ++++|.+||+|+.+
T Consensus       192 e~v~I~~~g~l~~~  205 (217)
T KOG0880|consen  192 EDVVIANCGELPVE  205 (217)
T ss_pred             ccEEEeecCccccc
Confidence            99999999999764

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.1e-56  Score=414.99  Aligned_cols=167  Identities=65%  Similarity=1.070  Sum_probs=162.1

Q ss_pred             ccceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCc--------ccCCCEEEEEEcCceeeeCCCcCCCC
Q 024387          100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGY--------GYKGCSFHRIIKDFMIQGGDFTEGDG  171 (268)
Q Consensus       100 ~~~~v~fDi~i~~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~--------gY~g~~f~Rvi~~f~iqgGd~~~~~g  171 (268)
                      .+|+|||||.|++++.|||+||||.|+||+||+||+.||+ |++|.        .|+|+.||||+++|||||||++.++|
T Consensus         7 ~~pr~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCt-GE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnG   85 (372)
T KOG0546|consen    7 TNPRVFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCT-GEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNG   85 (372)
T ss_pred             CCceEEEEEEeCCcccceEEEEeecccCchhHHHHHHHhc-cccCCCCCCCCeeeecCchhheeeecceeeccccccCCC
Confidence            4789999999999999999999999999999999999999 77763        49999999999999999999999999


Q ss_pred             CCCccccCCCCCCCccccccCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCCCCCC
Q 024387          172 TGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDY  251 (268)
Q Consensus       172 ~gg~s~~g~~~~de~~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td~~~~  251 (268)
                      +||.+|||..|+||++.++|+++++|||||.|||+||||||||+.++|||||+|+|||+||.|++||+.|+.+.+|..++
T Consensus        86 tGGeSIYG~~FdDEnF~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~~sk  165 (372)
T KOG0546|consen   86 TGGESIYGEKFDDENFELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLETDEESK  165 (372)
T ss_pred             CCcccccccccccccceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccccccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEEeeeEecCC
Q 024387          252 PKVPCRIINSGELPLD  267 (268)
Q Consensus       252 P~~~I~I~~cGvL~~~  267 (268)
                      |..+|+|.+||+|...
T Consensus       166 P~~dV~I~dCGel~~~  181 (372)
T KOG0546|consen  166 PLADVVISDCGELVKK  181 (372)
T ss_pred             CccceEeccccccccc
Confidence            9999999999999754

>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2e-50  Score=328.67  Aligned_cols=167  Identities=59%  Similarity=1.024  Sum_probs=160.1

Q ss_pred             ccccceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHHhcCC----CCcccCCCEEEEEEcCceeeeCCCcCCCCCC
Q 024387           98 AKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGE----KGYGYKGCSFHRIIKDFMIQGGDFTEGDGTG  173 (268)
Q Consensus        98 ~~~~~~v~fDi~i~~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~----kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~g  173 (268)
                      ...+|.|||||++++.++|||+||||.+.+|+|++||++.|+.-+    +..||+++.|||++++|||||||+-.++|+|
T Consensus         7 ~~~nPvVF~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDGtG   86 (177)
T KOG0879|consen    7 SPNNPVVFFDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYRKDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDGTG   86 (177)
T ss_pred             CCCCCeEEEEEeeCCEEcceEEEEEeeccChhhHHHHHhhcccccccCCccccccccchHHHhhhheeccCceecCCCce
Confidence            345899999999999999999999999999999999999999433    3468999999999999999999999999999


Q ss_pred             CccccCCCCCCCccccccCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCCCCCCCC
Q 024387          174 GISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPK  253 (268)
Q Consensus       174 g~s~~g~~~~de~~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td~~~~P~  253 (268)
                      -.++|+.+|+||++.++|.++|+|+|||+|+++||.|||||..+..|||++|+|||||++|+.++++|+.+++..+++|+
T Consensus        87 ~~sIy~~~F~DENFtlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~G~NnkPK  166 (177)
T KOG0879|consen   87 VASIYGSTFPDENFTLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPTGPNNKPK  166 (177)
T ss_pred             EEEEcCCCCCCcceeeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEeeeEe
Q 024387          254 VPCRIINSGEL  264 (268)
Q Consensus       254 ~~I~I~~cGvL  264 (268)
                      -+|.|..||++
T Consensus       167 l~v~i~qCGem  177 (177)
T KOG0879|consen  167 LPVVIVQCGEM  177 (177)
T ss_pred             CcEEEeecccC
Confidence            99999999975

>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain

Probab=100.00  E-value=9.1e-47  Score=321.10  Aligned_cols=159  Identities=73%  Similarity=1.257  Sum_probs=150.2

Q ss_pred             ceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHHhcCCCC-----cccCCCEEEEEEcCceeeeCCCcCCCCCCCcc
Q 024387          102 TKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKG-----YGYKGCSFHRIIKDFMIQGGDFTEGDGTGGIS  176 (268)
Q Consensus       102 ~~v~fDi~i~~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg-----~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s  176 (268)
                      |++||||.+++++.|+|+||||.+.||++|+||++||+ +.++     +.|+|+.|||++|+|+||+||+..+++.++.+
T Consensus         1 p~v~~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~-~~~g~~~~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~~~   79 (164)
T cd01926           1 PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCT-GEKGKGGKPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGGKS   79 (164)
T ss_pred             CEEEEEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhc-ccCCCcccccccCCCEEEEEeCCcEEEcCCccCCCCCCCCc
Confidence            57999999999999999999999999999999999998 3334     23999999999999999999988788889999


Q ss_pred             ccCCCCCCCccccccCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCCCCCCCCCCe
Q 024387          177 IYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPC  256 (268)
Q Consensus       177 ~~g~~~~de~~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td~~~~P~~~I  256 (268)
                      +++..+++|...++|..+|+|+||+.++++++|||||++.+.++||++|+|||+|++|||||++|++++++ +++|.++|
T Consensus        80 ~~g~~~~~e~~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~-~~~P~~~i  158 (164)
T cd01926          80 IYGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSG-NGKPKKKV  158 (164)
T ss_pred             ccCCccCCCCccccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCC-CCCCcCCe
Confidence            99999999988899999999999999999999999999999999999999999999999999999999998 99999999


Q ss_pred             EEEeee
Q 024387          257 RIINSG  262 (268)
Q Consensus       257 ~I~~cG  262 (268)
                      +|.+||
T Consensus       159 ~I~~cG  164 (164)
T cd01926         159 VIADCG  164 (164)
T ss_pred             EEEECC
Confidence            999998

This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl

>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional

Probab=100.00  E-value=1.7e-46  Score=325.87  Aligned_cols=164  Identities=66%  Similarity=1.157  Sum_probs=153.9

Q ss_pred             cceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHHhcCC--CC--cccCCCEEEEEEcCceeeeCCCcCCCCCCCcc
Q 024387          101 TTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGE--KG--YGYKGCSFHRIIKDFMIQGGDFTEGDGTGGIS  176 (268)
Q Consensus       101 ~~~v~fDi~i~~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~--kg--~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s  176 (268)
                      ++++||||.++++..|||+||||.+.||++|+||++||+..+  .+  .+|+++.||||+++|+|||||+..+++.|+.+
T Consensus        18 ~~~v~~di~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g~g~~~   97 (186)
T PLN03149         18 NPVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQGGDFLKGDGTGCVS   97 (186)
T ss_pred             CCEEEEEEeeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhccccCcccccCCcEEEEEcCCcEEEcCCcccCCCCCccc
Confidence            578999999999999999999999999999999999998432  12  35999999999999999999988788999999


Q ss_pred             ccCCCCCCCccccccCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEE-cCHHHHHHhhcCCCCCCCCCCCC
Q 024387          177 IYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVI-DGMDVVRKLESVETSRTDYPKVP  255 (268)
Q Consensus       177 ~~g~~~~de~~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~Vv-eGmdvL~~I~~~~td~~~~P~~~  255 (268)
                      +|+..|++|.+.++|..+|+|+|++.++++++||||||+.+.++||++|+|||+|+ +|||||++|++++++++++|.++
T Consensus        98 ~~g~~f~~e~~~~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~~P~~~  177 (186)
T PLN03149         98 IYGSKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLA  177 (186)
T ss_pred             ccCCccCCcccccccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCCCCCCcCC
Confidence            99999999988899999999999999999999999999999999999999999999 89999999999999999999999


Q ss_pred             eEEEeeeEe
Q 024387          256 CRIINSGEL  264 (268)
Q Consensus       256 I~I~~cGvL  264 (268)
                      |+|.+||++
T Consensus       178 i~I~~cG~~  186 (186)
T PLN03149        178 CVISECGEM  186 (186)
T ss_pred             eEEEeCEeC
Confidence            999999985

>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.2e-48  Score=336.09  Aligned_cols=166  Identities=63%  Similarity=1.074  Sum_probs=161.2

Q ss_pred             ccccceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCCCccc
Q 024387           98 AKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISI  177 (268)
Q Consensus        98 ~~~~~~v~fDi~i~~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~  177 (268)
                      ++.++.+|+||.+++...|||+++|..+..|+|++||..||+ |.+||||+|+.||||||.||+||||++.++|+||.+|
T Consensus       133 a~~~pqv~~~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lct-ge~gfgykgssfhriip~fmcqggdftn~ngtggksi  211 (298)
T KOG0111|consen  133 AMENPQVYHDIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCT-GEAGFGYKGSSFHRIIPKFMCQGGDFTNGNGTGGKSI  211 (298)
T ss_pred             hhhChHhhhheeecccccceEEEeecccCChhhhhhhhhhcc-ccCccCccccchhhhhhhhhccCCccccCCCCCCccc
Confidence            445899999999999999999999999999999999999999 8999999999999999999999999999999999999


Q ss_pred             cCCCCCCCccccccCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeE
Q 024387          178 YGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCR  257 (268)
Q Consensus       178 ~g~~~~de~~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td~~~~P~~~I~  257 (268)
                      ||..|.||++.++|..+|+|+|||+|+|+||||||||+....|||++|+|||.|++||+||+++++. ..+.++|.+.|+
T Consensus       212 ygkkfddenf~lkht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~q-gsksgkp~qkv~  290 (298)
T KOG0111|consen  212 YGKKFDDENFTLKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQ-GSKSGKPQQKVK  290 (298)
T ss_pred             ccccccccceeeecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHHHHHhc-cCCCCCcceEEE
Confidence            9999999999999999999999999999999999999999999999999999999999999999997 668999999999


Q ss_pred             EEeeeEec
Q 024387          258 IINSGELP  265 (268)
Q Consensus       258 I~~cGvL~  265 (268)
                      |.+||++.
T Consensus       291 i~~cge~~  298 (298)
T KOG0111|consen  291 IVECGEIE  298 (298)
T ss_pred             EEeccccC
Confidence            99999974

>PTZ00221 cyclophilin; Provisional

Probab=100.00  E-value=1.7e-45  Score=331.15  Aligned_cols=164  Identities=36%  Similarity=0.590  Sum_probs=150.5

Q ss_pred             ccccceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHHhcCCCC--------cccCCCEEEEEEcC-ceeeeCCCcC
Q 024387           98 AKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKG--------YGYKGCSFHRIIKD-FMIQGGDFTE  168 (268)
Q Consensus        98 ~~~~~~v~fDi~i~~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg--------~gY~g~~f~Rvi~~-f~iqgGd~~~  168 (268)
                      +..+++|||||.+++++.|||+||||.+.||+||+||++||+ |.++        .+|+|+.||||+++ |+||+||+..
T Consensus        49 ~~~~~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~-g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~  127 (249)
T PTZ00221         49 EQNSCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALIT-GSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS  127 (249)
T ss_pred             CCCCCEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhh-cccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC
Confidence            346889999999999999999999999999999999999998 4332        23999999999985 8999999763


Q ss_pred             CCCCCCccccCCCCCCCccccccCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCCC
Q 024387          169 GDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSR  248 (268)
Q Consensus       169 ~~g~gg~s~~g~~~~de~~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td~  248 (268)
                          ++.+++|..|++|++.++|+++|+|+|++.+++++||||||||.++++||++|+|||+|++|||||++|++++++.
T Consensus       128 ----~g~s~~G~~f~dE~~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~  203 (249)
T PTZ00221        128 ----FNVSSTGTPIADEGYRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDD  203 (249)
T ss_pred             ----CCccCCCCcccCccccccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCC
Confidence                2346678999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCeEEEeeeEecC
Q 024387          249 TDYPKVPCRIINSGELPL  266 (268)
Q Consensus       249 ~~~P~~~I~I~~cGvL~~  266 (268)
                      +++|.++|+|.+||+|..
T Consensus       204 ~grP~~~V~I~~Cgvl~~  221 (249)
T PTZ00221        204 VGRPLLPVTVSFCGALTG  221 (249)
T ss_pred             CCCCCCCeEEEECeEecC
Confidence            999999999999999964

>PTZ00060 cyclophilin; Provisional

Probab=100.00  E-value=2.2e-45  Score=318.01  Aligned_cols=163  Identities=63%  Similarity=1.058  Sum_probs=151.8

Q ss_pred             cceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHHhcC------CCCcccCCCEEEEEEcCceeeeCCCcCCCCCCC
Q 024387          101 TTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAG------EKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGG  174 (268)
Q Consensus       101 ~~~v~fDi~i~~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G------~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg  174 (268)
                      ++++|||+++++++.|+|+||||.+.||++|+||++||+..      ..++ |+|+.||||+|+++||+||+..+++.++
T Consensus        15 ~~~v~~di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~~g~~~~-Y~~~~fhRvi~~~~iqgGd~~~~~g~~g   93 (183)
T PTZ00060         15 RPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLH-YKGSIFHRIIPQFMCQGGDITNHNGTGG   93 (183)
T ss_pred             CCEEEEEEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccccCcccc-cCCeEEEEEcCCCeEEeCCccCCCCCCC
Confidence            67899999999999999999999999999999999999831      1234 9999999999999999999987788899


Q ss_pred             ccccCCCCCCCccccccCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCCCCCCCCC
Q 024387          175 ISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKV  254 (268)
Q Consensus       175 ~s~~g~~~~de~~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td~~~~P~~  254 (268)
                      .++++..+++|...++|..+|+|+|++.++++++|||||++.+.++||++|+|||+|++|||||++|++.++ ++++|.+
T Consensus        94 ~~~~g~~~~~e~~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~-~~~~P~~  172 (183)
T PTZ00060         94 ESIYGRKFTDENFKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGT-QSGYPKK  172 (183)
T ss_pred             CcccccccCCccccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCC-CCCCCcC
Confidence            999999999998889999899999999999999999999999999999999999999999999999999877 4789999


Q ss_pred             CeEEEeeeEec
Q 024387          255 PCRIINSGELP  265 (268)
Q Consensus       255 ~I~I~~cGvL~  265 (268)
                      +|+|.+||+|.
T Consensus       173 ~v~I~~cg~~~  183 (183)
T PTZ00060        173 PVVVTDCGELQ  183 (183)
T ss_pred             CeEEEEeEEcC
Confidence            99999999984

>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.7e-45  Score=295.62  Aligned_cols=148  Identities=53%  Similarity=0.887  Sum_probs=140.9

Q ss_pred             CeeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCCCccccCCCCCCCc-cccc
Q 024387          112 GKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDES-FVLK  190 (268)
Q Consensus       112 ~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~~de~-~~l~  190 (268)
                      +|++|.|++|||-+.||+||.||.+|++.||    |+|..||||+++|||||||++ +.|+||.++||..|+||- .+++
T Consensus        15 eTsmG~i~~ElY~kHaP~TC~NF~eLarrgY----Yn~v~FHRii~DFmiQGGDPT-GTGRGGaSIYG~kF~DEi~~dLk   89 (164)
T KOG0881|consen   15 ETSMGKITLELYWKHAPRTCQNFAELARRGY----YNGVIFHRIIKDFMIQGGDPT-GTGRGGASIYGDKFEDEIHSDLK   89 (164)
T ss_pred             eecccceehhhhhhcCcHHHHHHHHHHhccc----ccceeeeehhhhheeecCCCC-CCCCCccccccchhhhhhhhhhc
Confidence            3667999999999999999999999999666    999999999999999999997 899999999999999985 5799


Q ss_pred             cCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEeeeEe
Q 024387          191 HVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL  264 (268)
Q Consensus       191 h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td~~~~P~~~I~I~~cGvL  264 (268)
                      |.++|.|+|||.|||+|||||||||.+.+||||+|++||||+.||+|++++..+.||..++|..+++|.++-.+
T Consensus        90 hTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~~DRPi~~~kIika~~~  163 (164)
T KOG0881|consen   90 HTGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRMGMVETDNSDRPIDEVKIIKAYPS  163 (164)
T ss_pred             ccchhhhhhhccCCCCCCceEEEEecCccccCCcceeehhhhhhHHHHHhhcceecCCCCCCccceeeEeeecC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999987654

>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.9e-44  Score=300.38  Aligned_cols=147  Identities=49%  Similarity=0.818  Sum_probs=134.3

Q ss_pred             CCeeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCCCccccCCCCCCCccccc
Q 024387          111 GGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLK  190 (268)
Q Consensus       111 ~~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~~de~~~l~  190 (268)
                      ..|+.|+|+||||++.||+||+||++||+.|+    |+|+.||||+++|||||||++.+++.||.   +++|++|+....
T Consensus         4 ~~t~~G~I~ieL~~~~aP~Tv~NF~~l~~~g~----Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~---~~~f~~E~~~~~   76 (158)
T COG0652           4 LETNKGDITIELYPDKAPKTVANFLQLVKEGF----YDGTIFHRVIPGFMIQGGDPTGGDGTGGP---GPPFKDENFALN   76 (158)
T ss_pred             eeccCCCEEEEECCCcCcHHHHHHHHHHHcCC----CCCceEEEeecCceeecCCCCCCCCCCCC---CCCCcccccccc
Confidence            45789999999999999999999999999666    99999999999999999999987788887   488999998887


Q ss_pred             cCC--CeEEEEecCC-CCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCCCC----CCCCCCeEEEeeeE
Q 024387          191 HVG--PGVLSMANAG-PNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRT----DYPKVPCRIINSGE  263 (268)
Q Consensus       191 h~~--~G~lsma~~g-p~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td~~----~~P~~~I~I~~cGv  263 (268)
                      |.+  +|+|||||.+ ||+++|||||++.+.+|||++|+|||+|++|||+|++|++..+...    +.|..+++|....+
T Consensus        77 ~~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~~~~~~~~~~~~~~i~~~~~  156 (158)
T COG0652          77 GDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVKILSVKI  156 (158)
T ss_pred             cccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCccCCCcccCCCCCCeEEeeeee
Confidence            777  9999999998 9999999999999999999999999999999999999999877753    46668888888776


Q ss_pred             e
Q 024387          264 L  264 (268)
Q Consensus       264 L  264 (268)
                      +
T Consensus       157 ~  157 (158)
T COG0652         157 V  157 (158)
T ss_pred             e
Confidence            5

>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain

Probab=100.00  E-value=5.1e-43  Score=296.86  Aligned_cols=149  Identities=48%  Similarity=0.771  Sum_probs=140.6

Q ss_pred             eeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCCCccccCCCCCCCc-ccccc
Q 024387          113 KPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDES-FVLKH  191 (268)
Q Consensus       113 t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~~de~-~~l~h  191 (268)
                      |+.|+|+||||.+.||++|+||++||+.|+    |+|+.|||++|+|+||+||+. +++.++.++++..+++|. ..++|
T Consensus         6 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~----Y~~~~f~rv~~~~~iq~Gd~~-~~g~~~~~~~g~~~~~E~~~~~~h   80 (159)
T cd01923           6 TNKGDLNLELHCDKAPKACENFIKLCKKGY----YDGTIFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEFKPNLSH   80 (159)
T ss_pred             EccccEEEEEeCCCChHHHHHHHHHHhcCc----cCCcEEEEEeCCcEEEecccC-CCCCCCccccCCccCcccccCcCc
Confidence            678999999999999999999999999776    999999999999999999986 678888999999999885 46789


Q ss_pred             CCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEeeeEecC
Q 024387          192 VGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPL  266 (268)
Q Consensus       192 ~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td~~~~P~~~I~I~~cGvL~~  266 (268)
                      .++|+|+|++.++++++|||||++.+.++||++|+|||+|++|||+|++|++++++++++|.++|+|.+|+++.+
T Consensus        81 ~~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~~~i~~d  155 (159)
T cd01923          81 DGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMENVPDPGTDRPKEEIKIEDTSVFVD  155 (159)
T ss_pred             CCCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEeEEEeC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999999864

This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.

>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like

Probab=100.00  E-value=4.3e-43  Score=295.68  Aligned_cols=146  Identities=51%  Similarity=0.812  Sum_probs=137.6

Q ss_pred             CeeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCCCccccCCCCCCCcc-ccc
Q 024387          112 GKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESF-VLK  190 (268)
Q Consensus       112 ~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~~de~~-~l~  190 (268)
                      .|+.|+|+||||++.||++|+||++||+.|+    |+|+.|||++++|++||||+. +++.++.++++..+++|.. .++
T Consensus         6 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~----Y~~~~f~rv~~~f~iq~Gd~~-~~g~g~~~~~~~~~~~e~~~~~~   80 (153)
T cd01928           6 HTNLGDIKIELFCDDCPKACENFLALCASGY----YNGCIFHRNIKGFMVQTGDPT-GTGKGGESIWGKKFEDEFRETLK   80 (153)
T ss_pred             EEccccEEEEEcCCCCcHHHHHHHHHHhcCc----cCCcEEEEeCCCCEEEccccC-CCCCCCCccCCCccccccccCCC
Confidence            3788999999999999999999999999776    999999999999999999986 6788888899999999875 578


Q ss_pred             cCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEeee
Q 024387          191 HVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSG  262 (268)
Q Consensus       191 h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td~~~~P~~~I~I~~cG  262 (268)
                      |..+|+|+|++.++++++|||||++.+.++||++|+|||+|++|||||++|++++++++++|.++|+|.+|.
T Consensus        81 ~~~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~~~  152 (153)
T cd01928          81 HDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLEEIRIKDVT  152 (153)
T ss_pred             cCCCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHHHHHcCCCCCCCCCcCCeEEEEeE
Confidence            889999999999999999999999999999999999999999999999999999999999999999999984

Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.

>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain

Probab=100.00  E-value=3.9e-43  Score=294.35  Aligned_cols=144  Identities=58%  Similarity=0.915  Sum_probs=136.0

Q ss_pred             CeeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCCCccccCCCCCCCcc-ccc
Q 024387          112 GKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESF-VLK  190 (268)
Q Consensus       112 ~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~~de~~-~l~  190 (268)
                      .|+.|+|+||||.+.||++|+||++||+.|+    |+|+.|||++|+|+|||||+. +++.++.++++..+++|.. .++
T Consensus         3 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~----Y~~~~f~Rvi~~f~iq~Gd~~-~~g~g~~~~~~~~~~~e~~~~~~   77 (148)
T cd01927           3 HTTKGDIHIRLFPEEAPKTVENFTTHARNGY----YNNTIFHRVIKGFMIQTGDPT-GDGTGGESIWGKEFEDEFSPSLK   77 (148)
T ss_pred             EeccccEEEEEeCCCCcHHHHHHHHHhhcCC----cCCcEEEEEcCCcEEEecccC-CCCCCCCcccCCccccccccccC
Confidence            4678999999999999999999999999776    999999999999999999986 6788888899999999875 788


Q ss_pred             cCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEe
Q 024387          191 HVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIIN  260 (268)
Q Consensus       191 h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td~~~~P~~~I~I~~  260 (268)
                      |.++|+|+||+.++++++|||||++.+.++||++|+|||+|++|||||++|++++++++++|.++|+|.+
T Consensus        78 h~~~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~  147 (148)
T cd01927          78 HDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIKIIN  147 (148)
T ss_pred             cCCCeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHcCCCCCCCCCcCCeEEEe
Confidence            9889999999999999999999999999999999999999999999999999999999999999999985

This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.

>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)

Probab=100.00  E-value=2e-42  Score=295.00  Aligned_cols=150  Identities=41%  Similarity=0.633  Sum_probs=136.2

Q ss_pred             CeeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCCCccccC-------CCCCC
Q 024387          112 GKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYG-------SSFED  184 (268)
Q Consensus       112 ~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g-------~~~~d  184 (268)
                      .|+.|+|+||||.+.||++|+||++||+.|+    |+|+.||||+++|+|||||+. +++.++.++++       ..+++
T Consensus         3 ~Ts~G~i~ieL~~~~aP~t~~nF~~L~~~~~----Y~g~~fhrvi~~f~iQgGd~~-~~g~~~~~~~~~~~~~~~~~~~~   77 (166)
T cd01921           3 ETTLGDLVIDLFTDECPLACLNFLKLCKLKY----YNFCLFYNVQKDFIAQTGDPT-GTGAGGESIYSQLYGRQARFFEP   77 (166)
T ss_pred             EeccCCEEEEEcCCCCCHHHHHHHHHHhcCC----cCCCEEEEEeCCceEEECCcC-CCCCCCcccccccccccCcccCc
Confidence            4788999999999999999999999999766    999999999999999999986 66777776654       34566


Q ss_pred             Cc-cccccCCCeEEEEecCCCCCCCccceEEecC-CCCCCCCceEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEeee
Q 024387          185 ES-FVLKHVGPGVLSMANAGPNTNGSQFFICTVK-TPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSG  262 (268)
Q Consensus       185 e~-~~l~h~~~G~lsma~~gp~s~gSqFfItl~~-~~~LDg~~~VFG~VveGmdvL~~I~~~~td~~~~P~~~I~I~~cG  262 (268)
                      |. ..++|..+|+|+||+.++++++|||||++.+ .++||++|+|||+|++|||||++|++++++++++|.++|+|.+|+
T Consensus        78 e~~~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~~~P~~~i~I~~~~  157 (166)
T cd01921          78 EILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDIRIKHTH  157 (166)
T ss_pred             ccCCccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEEE
Confidence            65 4678989999999999999999999999975 899999999999999999999999999999999999999999999


Q ss_pred             EecC
Q 024387          263 ELPL  266 (268)
Q Consensus       263 vL~~  266 (268)
                      +|..
T Consensus       158 i~~~  161 (166)
T cd01921         158 ILDD  161 (166)
T ss_pred             EECC
Confidence            9964

This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.

>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2

Probab=100.00  E-value=2.4e-42  Score=289.09  Aligned_cols=143  Identities=55%  Similarity=0.918  Sum_probs=133.9

Q ss_pred             CeeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCCCccccCCCCCCCc-cccc
Q 024387          112 GKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDES-FVLK  190 (268)
Q Consensus       112 ~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~~de~-~~l~  190 (268)
                      .|+.|+|+||||.+.||++|+||++||+.|+    |+|+.|||++|+|++||||+. +++.++.++++..|++|. ..++
T Consensus         3 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~----Y~~~~f~Rvi~~f~iq~Gd~~-~~g~~~~~~~~~~~~~e~~~~~~   77 (146)
T cd01922           3 ETTMGEITLELYWNHAPKTCKNFYELAKRGY----YNGTIFHRLIKDFMIQGGDPT-GTGRGGASIYGKKFEDEIHPELK   77 (146)
T ss_pred             EeccccEEEEEcCCCCcHHHHHHHHHHhcCC----cCCcEEEEEcCCcEEEecccC-CCCCCcccccCCCcccccccCcC
Confidence            4788999999999999999999999999776    999999999999999999986 677888888999999884 5788


Q ss_pred             cCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEe
Q 024387          191 HVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIIN  260 (268)
Q Consensus       191 h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td~~~~P~~~I~I~~  260 (268)
                      |.++|+|+|++.++++++|||||++.+.|+||++|+|||+|++|||||++|++++++ +++|.++|+|.+
T Consensus        78 h~~~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~-~~~P~~~I~I~~  146 (146)
T cd01922          78 HTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQTQ-TDRPIDEVKILK  146 (146)
T ss_pred             CCCCeEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHhCCCC-CCCcCCCeEEeC
Confidence            989999999999999999999999999999999999999999999999999999998 889999999973

These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.

>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16

Probab=100.00  E-value=7.1e-40  Score=280.73  Aligned_cols=148  Identities=43%  Similarity=0.707  Sum_probs=138.4

Q ss_pred             eeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCCCccccCCCCCCCcc-cccc
Q 024387          113 KPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESF-VLKH  191 (268)
Q Consensus       113 t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~~de~~-~l~h  191 (268)
                      |++|+|+||||.+.||++|+||++||+.|+    |+|+.|||++++|+|||||+. +++.++.++|+..+++|.. .++|
T Consensus        12 Ts~G~i~ieL~~~~~P~t~~nF~~L~~~~~----Y~~~~f~Rvi~~f~iQgGd~~-~~g~g~~s~~g~~~~~E~~~~~~~   86 (171)
T cd01925          12 TTAGDIDIELWSKEAPKACRNFIQLCLEGY----YDNTIFHRVVPGFIIQGGDPT-GTGTGGESIYGEPFKDEFHSRLRF   86 (171)
T ss_pred             EccccEEEEEeCCCChHHHHHHHHHHhcCC----CCCCEEEEEcCCcEEEccccC-CCCccCcccCCCccCcccccCcCC
Confidence            568999999999999999999999999766    999999999999999999986 6788888999999998865 5678


Q ss_pred             CCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEE-cCHHHHHHhhcCCCCCCCCCCCCeEEEeeeEec
Q 024387          192 VGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVI-DGMDVVRKLESVETSRTDYPKVPCRIINSGELP  265 (268)
Q Consensus       192 ~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~Vv-eGmdvL~~I~~~~td~~~~P~~~I~I~~cGvL~  265 (268)
                      +++|+|+||+.++++++|||||++.+.++||++|+|||+|+ +++++|++|++++++++++|.++|+|.+|+++.
T Consensus        87 ~~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~~~P~~~i~I~~~~i~~  161 (171)
T cd01925          87 NRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKDERPVYPPKITSVEVLE  161 (171)
T ss_pred             CCCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCCCCcCCCeEEEEEEEEc
Confidence            89999999999999999999999999999999999999999 468899999999999999999999999999985

C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.

>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.2e-41  Score=311.92  Aligned_cols=159  Identities=46%  Similarity=0.756  Sum_probs=149.3

Q ss_pred             ccccceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCCCccc
Q 024387           98 AKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISI  177 (268)
Q Consensus        98 ~~~~~~v~fDi~i~~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~  177 (268)
                      ..+.++-|..+..   +.|.|.|||+.|.+|++|+||+.||+.||    |+|+.|||.|.+|||||||++ +.|.||.+|
T Consensus       272 ~rvKkkgyvrl~T---n~G~lNlELhcd~~P~aceNFI~lc~~gY----Ynnt~FHRsIrnFmiQGGDPT-GTG~GGeSi  343 (518)
T KOG0883|consen  272 TRVKKKGYVRLVT---NHGPLNLELHCDYAPRACENFITLCKNGY----YNNTIFHRSIRNFMIQGGDPT-GTGRGGESI  343 (518)
T ss_pred             ccccccceEEEec---cCCceeeEeecCcchHHHHHHHHHHhccc----ccchHHHHHHHHHeeeCCCCC-CCCCCCccc
Confidence            3456777877665   58999999999999999999999999777    999999999999999999997 899999999


Q ss_pred             cCCCCCCCc-cccccCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCCCCCCCCCCe
Q 024387          178 YGSSFEDES-FVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPC  256 (268)
Q Consensus       178 ~g~~~~de~-~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td~~~~P~~~I  256 (268)
                      ||.+|.||. ..+.|..||+|+|||+|||+|||||||+...+.+||++|+|||+||.|+|+|.+|+.++++++++|..+|
T Consensus       344 WgKpFkDEf~~~l~H~gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFGrvVGGldtL~amEnve~d~~DrP~e~I  423 (518)
T KOG0883|consen  344 WGKPFKDEFCSNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVVGGLDTLTAMENVETDEKDRPKEEI  423 (518)
T ss_pred             cCCccccccCCCCCcCCcceEeeccCCCCCCCceEEEEecchhhccccceeeeeeeccHHHHHHHhcCCCCCCCCcccce
Confidence            999999997 4689999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeeEe
Q 024387          257 RIINSGEL  264 (268)
Q Consensus       257 ~I~~cGvL  264 (268)
                      +|.+.-|.
T Consensus       424 ~i~~~~VF  431 (518)
T KOG0883|consen  424 KIEDAIVF  431 (518)
T ss_pred             EEeeeEEe
Confidence            99998775

>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional

Probab=100.00  E-value=1e-39  Score=284.18  Aligned_cols=146  Identities=34%  Similarity=0.540  Sum_probs=128.2

Q ss_pred             eeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCCCccccCCCCCCCccccccC
Q 024387          113 KPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHV  192 (268)
Q Consensus       113 t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~~de~~~l~h~  192 (268)
                      |+.|+|+||||.+.||++|+||++||+.|+    |+|+.|||++|+|+|||||+....+.   ..++.++++|.....|+
T Consensus        35 T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~----Ydg~~FhRvi~~f~iQgG~~~~~~~~---~~~~~~~~~e~~~~l~~  107 (190)
T PRK10903         35 TSAGNIELELNSQKAPVSVKNFVDYVNSGF----YNNTTFHRVIPGFMIQGGGFTEQMQQ---KKPNPPIKNEADNGLRN  107 (190)
T ss_pred             eccccEEEEEeCCCCcHHHHHHHHHHhcCC----cCCcEEEEEeCCceEEeCCcCCCCCC---CCCCCcccCcccccCcC
Confidence            578999999999999999999999999766    99999999999999999997643221   22356677776555566


Q ss_pred             CCeEEEEecCC-CCCCCccceEEecCCCCCCC-----CceEEEEEEcCHHHHHHhhcCCCCC----CCCCCCCeEEEeee
Q 024387          193 GPGVLSMANAG-PNTNGSQFFICTVKTPWLDN-----RHVVFGHVIDGMDVVRKLESVETSR----TDYPKVPCRIINSG  262 (268)
Q Consensus       193 ~~G~lsma~~g-p~s~gSqFfItl~~~~~LDg-----~~~VFG~VveGmdvL~~I~~~~td~----~~~P~~~I~I~~cG  262 (268)
                      .+|+|+||+.+ +++++|||||++.+.++||+     +|+|||+|++|||||++|+++++++    +++|.++|+|.+|+
T Consensus       108 ~~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~~~~  187 (190)
T PRK10903        108 TRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSAK  187 (190)
T ss_pred             CCcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEecCHHHHHHHHcCCCCCCCCCCCcccCCeEEEEEE
Confidence            79999999965 89999999999999999984     8999999999999999999999986    57999999999999


Q ss_pred             Eec
Q 024387          263 ELP  265 (268)
Q Consensus       263 vL~  265 (268)
                      +++
T Consensus       188 v~~  190 (190)
T PRK10903        188 VLP  190 (190)
T ss_pred             EeC
Confidence            985

>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional

Probab=100.00  E-value=1.9e-39  Score=276.46  Aligned_cols=146  Identities=36%  Similarity=0.554  Sum_probs=125.4

Q ss_pred             CeeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCCCccccCCCCCCCcccccc
Q 024387          112 GKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKH  191 (268)
Q Consensus       112 ~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~~de~~~l~h  191 (268)
                      .|+.|+|+||||.+.||++|+||++||+.|+    |+|+.||||+|+|+|||||+..+.+..   .++..+++|.....+
T Consensus         5 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~----Yd~~~fhRvi~~f~iQgGd~~~~~~~~---~~~~~~~~e~~~~~~   77 (164)
T PRK10791          5 HTNHGDIVIKTFDDKAPETVKNFLDYCREGF----YNNTIFHRVINGFMIQGGGFEPGMKQK---ATKEPIKNEANNGLK   77 (164)
T ss_pred             EEccccEEEEEeCCCCcHHHHHHHHHHhcCC----cCCcEEEEEecCcEEEeCCcCCCCCcC---CCCCCcCCccccccc
Confidence            4789999999999999999999999999777    999999999999999999976443322   235567777543334


Q ss_pred             CCCeEEEEecCC-CCCCCccceEEecCCCCCC-------C-CceEEEEEEcCHHHHHHhhcCCCCC----CCCCCCCeEE
Q 024387          192 VGPGVLSMANAG-PNTNGSQFFICTVKTPWLD-------N-RHVVFGHVIDGMDVVRKLESVETSR----TDYPKVPCRI  258 (268)
Q Consensus       192 ~~~G~lsma~~g-p~s~gSqFfItl~~~~~LD-------g-~~~VFG~VveGmdvL~~I~~~~td~----~~~P~~~I~I  258 (268)
                      +.+|+||||+.+ |++++|||||++.+.++||       + +|+|||+|+||||||++|+++++++    +++|..+|+|
T Consensus        78 ~~~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~I  157 (164)
T PRK10791         78 NTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDVII  157 (164)
T ss_pred             CCCcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcCcCCCCCccCCCcCCCeEE
Confidence            479999999975 9999999999999988876       3 7999999999999999999999987    3799999999


Q ss_pred             EeeeEe
Q 024387          259 INSGEL  264 (268)
Q Consensus       259 ~~cGvL  264 (268)
                      .+|.+.
T Consensus       158 ~~~~i~  163 (164)
T PRK10791        158 ESVTVS  163 (164)
T ss_pred             EEEEEe
Confidence            999775

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.7e-40  Score=311.98  Aligned_cols=157  Identities=52%  Similarity=0.797  Sum_probs=146.6

Q ss_pred             ceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCCCccccCCC
Q 024387          102 TKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSS  181 (268)
Q Consensus       102 ~~v~fDi~i~~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~  181 (268)
                      ++..-+-+|.-|+.|+|.|.||+++||+||+||.-.|+.||    |+|..||||+++||||+||+. |+|+||.+|||..
T Consensus       400 ~~~l~~~aiihtt~gdi~~kl~p~ecpktvenf~th~rngy----y~~~~fhriik~fmiqtgdp~-g~gtggesiwg~d  474 (558)
T KOG0882|consen  400 NKLLGKAAIIHTTQGDIHIKLYPEECPKTVENFTTHSRNGY----YDNHTFHRIIKGFMIQTGDPL-GDGTGGESIWGKD  474 (558)
T ss_pred             ceecccceEEEecccceEEEecccccchhhhhhhccccCcc----ccCcchHHhhhhheeecCCCC-CCCCCCccccccc
Confidence            34444555667899999999999999999999999999777    999999999999999999997 8999999999999


Q ss_pred             CCCCc-cccccCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEe
Q 024387          182 FEDES-FVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIIN  260 (268)
Q Consensus       182 ~~de~-~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td~~~~P~~~I~I~~  260 (268)
                      |+||. ..|.|+++-+|+|||.|||+||||||||+.+.||||++|+|||||+.|||||++|+++.|++++||.++|.|.+
T Consensus       475 fedefh~~lrhdrpft~smanag~ntngsqffit~~~tpwld~khtvfgrv~~gm~vvqri~~v~t~k~drp~e~v~iin  554 (558)
T KOG0882|consen  475 FEDEFHPNLRHDRPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDVVQRIEQVKTDKYDRPYEDVKIIN  554 (558)
T ss_pred             chhhcCcccccCCCceEEecccCCCCCCceEEEEecCccccCCcceeEEEEecchhHHhHhhhcccCcCCCCCCceeEEE
Confidence            99997 57899999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             eeE
Q 024387          261 SGE  263 (268)
Q Consensus       261 cGv  263 (268)
                      .-+
T Consensus       555 isv  557 (558)
T KOG0882|consen  555 ISV  557 (558)
T ss_pred             Eec
Confidence            643

>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.6e-40  Score=281.44  Aligned_cols=163  Identities=64%  Similarity=1.133  Sum_probs=156.8

Q ss_pred             ccceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEE---EcCceeeeCCCcCCCCCCCcc
Q 024387          100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRI---IKDFMIQGGDFTEGDGTGGIS  176 (268)
Q Consensus       100 ~~~~v~fDi~i~~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rv---i~~f~iqgGd~~~~~g~gg~s  176 (268)
                      +++++|||+.++++++||++++|+.|..|+|++||..||+ |.|+++|++..|||+   +++||+||||++.++++||.+
T Consensus         2 ~~~~vf~d~~~~~~p~gr~~~~l~ad~~Pktaenf~al~t-gekg~~yk~s~fhr~~~~~~~fm~qggDft~hngtggkS   80 (167)
T KOG0865|consen    2 VNPTVFFDIAIDGEPLGRIVFELFADKIPKTAENFRALCT-GEKGFGYKGSCFHRLIPIIPGFMCQGGDFTCHNGTGGKS   80 (167)
T ss_pred             CCCeeeeeeeecCccccccceecccccCcchHhhhhhccc-CCCccccccchhhhccccccceeeccCcccccCCccceE
Confidence            5789999999999999999999999999999999999999 899999999999993   447999999999999999999


Q ss_pred             ccCCCCCCCccccccCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCCCCCCCCCCe
Q 024387          177 IYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPC  256 (268)
Q Consensus       177 ~~g~~~~de~~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td~~~~P~~~I  256 (268)
                      +|++.|+||++.++|..+|.|+|||.|||+|+|||||++....|||++|+|||+|.+||+++++|+.. ..+++++.++|
T Consensus        81 iy~ekF~DenFilkhtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e~~-gs~~gk~~~~i  159 (167)
T KOG0865|consen   81 IYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAMERF-GSRNGKTSKKI  159 (167)
T ss_pred             ecccccCCcCcEEecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceEcccchhhhhhcc-CCcCCcccccE
Confidence            99999999999999999999999999999999999999999999999999999999999999999995 77899999999


Q ss_pred             EEEeeeEe
Q 024387          257 RIINSGEL  264 (268)
Q Consensus       257 ~I~~cGvL  264 (268)
                      .|.+||+|
T Consensus       160 ~i~dcg~l  167 (167)
T KOG0865|consen  160 TIADCGQL  167 (167)
T ss_pred             EEecCCcC
Confidence            99999986

>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E

Probab=100.00  E-value=1.4e-38  Score=268.75  Aligned_cols=141  Identities=37%  Similarity=0.500  Sum_probs=123.7

Q ss_pred             eeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCCCccccCCCCCCCccccccC
Q 024387          113 KPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHV  192 (268)
Q Consensus       113 t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~~de~~~l~h~  192 (268)
                      |+.|+|+||||.+.||++|+||++||+.|+    |+|+.||||+|+|+|||||+....+.   ..++..+++|.....|+
T Consensus         4 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~----Yd~~~fhRvi~~f~iQ~Gd~~~~~~~---~~~~~~~~~e~~~~~~~   76 (155)
T cd01920           4 TSLGDIVVELYDDKAPITVENFLAYVRKGF----YDNTIFHRVISGFVIQGGGFTPDLAQ---KETLKPIKNEAGNGLSN   76 (155)
T ss_pred             ecceeEEEEEeCCCCcHHHHHHHHHHhcCC----CCCCEEEEEeCCcEEEeCCCCCCCCc---cccCCcccCcccccccC
Confidence            678999999999999999999999999766    99999999999999999998744322   22356677776655567


Q ss_pred             CCeEEEEecCC-CCCCCccceEEecCCCCCCC-----CceEEEEEEcCHHHHHHhhcCCCCCC----CCCCCCeEEEe
Q 024387          193 GPGVLSMANAG-PNTNGSQFFICTVKTPWLDN-----RHVVFGHVIDGMDVVRKLESVETSRT----DYPKVPCRIIN  260 (268)
Q Consensus       193 ~~G~lsma~~g-p~s~gSqFfItl~~~~~LDg-----~~~VFG~VveGmdvL~~I~~~~td~~----~~P~~~I~I~~  260 (268)
                      .+|+|+||+.+ +++++|||||++.+.++||+     +|+|||+|+||||||++|++++++.+    ++|..+|+|.+
T Consensus        77 ~~G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~p~~~v~i~~  154 (155)
T cd01920          77 TRGTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQDVIIES  154 (155)
T ss_pred             CceEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCcCCCcCCCeEEEE
Confidence            89999999965 89999999999999999995     79999999999999999999999874    69999999976

coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.

>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.9e-39  Score=257.22  Aligned_cols=146  Identities=49%  Similarity=0.747  Sum_probs=138.3

Q ss_pred             eeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCCCccccCCCCCCCcc-cccc
Q 024387          113 KPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESF-VLKH  191 (268)
Q Consensus       113 t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~~de~~-~l~h  191 (268)
                      |..|+|.||||.+.+|++|+||+.||...+    |+||+|||-+|+|++|+||++ ..|.||.++||.+|+||.. .++|
T Consensus         7 t~~gdikiev~~e~tpktce~~l~~~~~~~----~n~~~~~~~~~~f~v~~~~~~-~tgrgg~siwg~~fede~~~~lkh   81 (161)
T KOG0884|consen    7 TDVGDIKIEVFCERTPKTCENFLALCASDY----YNGCIFHRNIKGFMVQTGDPT-HTGRGGNSIWGKKFEDEYSEYLKH   81 (161)
T ss_pred             eccCcEEEEEEecCChhHHHHHHHHhhhhh----ccceeecCCCCCcEEEeCCCC-CCCCCCccccCCcchHHHHHHHhh
Confidence            567999999999999999999999999767    999999999999999999987 7899999999999999975 5899


Q ss_pred             CCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCCCC-CCCCCCeEEEeeeE
Q 024387          192 VGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRT-DYPKVPCRIINSGE  263 (268)
Q Consensus       192 ~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td~~-~~P~~~I~I~~cGv  263 (268)
                      +-+|.|+|||.|||+|+||||||.+..++||-+|+|||+||+|+|+|++|+.+++++. .||..++.|.+..+
T Consensus        82 ~~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvidg~etldele~l~v~~ktyrpl~~~~ik~iti  154 (161)
T KOG0884|consen   82 NVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITI  154 (161)
T ss_pred             ccceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHHHHhhcccCccccccchheeeeeeEE
Confidence            9999999999999999999999999999999999999999999999999999999886 89999999988654

>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms

Probab=100.00  E-value=1.1e-37  Score=261.03  Aligned_cols=150  Identities=51%  Similarity=0.827  Sum_probs=131.9

Q ss_pred             EEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCCC-ccccCCCCC
Q 024387          105 FFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGG-ISIYGSSFE  183 (268)
Q Consensus       105 ~fDi~i~~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg-~s~~g~~~~  183 (268)
                      ||||++++  .|+|+||||++.||++|+||++||+.|+    |+|+.|||++|+++||+|++......+. ....+..++
T Consensus         1 ~~~i~t~~--~G~i~ieL~~~~aP~~~~nF~~l~~~~~----y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~~~~~~~~   74 (155)
T PF00160_consen    1 FVDIETSG--LGRIVIELFGDEAPKTVENFLRLCTSGF----YDGTKFHRIIPNFVIQGGDPTGNGGYGREDSTGGEPIP   74 (155)
T ss_dssp             EEEEEETT--EEEEEEEEETTTSHHHHHHHHHHHHTTS----STTEBEEEEETTTEEEESSTTTSSSSTSEEBTTBSCBS
T ss_pred             CEEEEeCC--ccCEEEEEeCCCCcHHHHhhehhhcccc----cCCceeecccccceeeeeeccCCCCcccccccCccccc
Confidence            78899876  9999999999999999999999999666    9999999999999999999875443111 122344678


Q ss_pred             CCcc--ccccCCCeEEEEecCC--CCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEE
Q 024387          184 DESF--VLKHVGPGVLSMANAG--PNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRII  259 (268)
Q Consensus       184 de~~--~l~h~~~G~lsma~~g--p~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td~~~~P~~~I~I~  259 (268)
                      +|..  .+.| .+|+|+|++.+  +++++|||||+|.+.++||++|+|||+|++|||+|++|+++++++  +|.++|+|.
T Consensus        75 ~E~~~~~~~~-~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~--~p~~~v~I~  151 (155)
T PF00160_consen   75 DEFNPSLLKH-RRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAGPTDE--RPKQDVTIS  151 (155)
T ss_dssp             SSGBTTSSSS-STTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTSBBTT--EBSSTEEEE
T ss_pred             cccccccccc-cceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHHHHHHHCCCCCC--ccCCCeEEE
Confidence            8874  5666 79999999976  889999999999999999999999999999999999999998887  999999999


Q ss_pred             eeeE
Q 024387          260 NSGE  263 (268)
Q Consensus       260 ~cGv  263 (268)
                      +|||
T Consensus       152 ~cgv  155 (155)
T PF00160_consen  152 SCGV  155 (155)
T ss_dssp             EEEE
T ss_pred             EeEC
Confidence            9997

It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....

>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases

Probab=100.00  E-value=2.7e-37  Score=256.43  Aligned_cols=142  Identities=56%  Similarity=0.871  Sum_probs=129.0

Q ss_pred             eeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCCCccccCCCCCCCccccc-c
Q 024387          113 KPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLK-H  191 (268)
Q Consensus       113 t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~~de~~~l~-h  191 (268)
                      |+.|+|+||||.+.||++|+||++||+.++    |+|+.|||++|+++||+||+....+.+  ..++..+++|..... |
T Consensus         4 T~~G~i~IeL~~~~~P~~~~nF~~l~~~~~----Y~~~~f~rv~~~~~iq~Gd~~~~~~~~--~~~~~~~~~E~~~~~~~   77 (146)
T cd00317           4 TTKGRIVIELYGDEAPKTVENFLSLARGGF----YDGTTFHRVIPGFMIQGGDPTGTGGGG--SGPGYKFPDENFPLKYH   77 (146)
T ss_pred             eccCcEEEEEcCCCChHHHHHHHHHHhcCC----cCCCEEEEEeCCCeEEECCCCCCCCCC--CcCCCccCCccccCcCc
Confidence            567999999999999999999999999766    999999999999999999987544332  345677888887665 7


Q ss_pred             CCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEe
Q 024387          192 VGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIIN  260 (268)
Q Consensus       192 ~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td~~~~P~~~I~I~~  260 (268)
                      .++|+|+|++.+++++++||||++.+.++||++|+|||+|++|||+|++|++.+++++++|.++|+|.+
T Consensus        78 ~~~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~  146 (146)
T cd00317          78 HRRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTISD  146 (146)
T ss_pred             CCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHcCCCCCCCcCcCceEEeC
Confidence            889999999999999999999999999999999999999999999999999999999999999999973

This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP

>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40

Probab=100.00  E-value=4.5e-35  Score=252.26  Aligned_cols=129  Identities=37%  Similarity=0.561  Sum_probs=109.2

Q ss_pred             CeeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCC--------------------
Q 024387          112 GKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDG--------------------  171 (268)
Q Consensus       112 ~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g--------------------  171 (268)
                      .|+.|+|+||||++.||++|+||++||+.|+    |+|+.||||+++|||||||+...+.                    
T Consensus         3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~----Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p~e~~~~   78 (176)
T cd01924           3 ATDNGTITIVLDGYNAPVTAGNFVDLVERGF----YDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIPLEIKPE   78 (176)
T ss_pred             ccccceEEEEEcCCCCCHHHHHHHHHHHhCC----cCCCEEEEecCCcEEEecCCCCCCCCcccccccccccccceeccc
Confidence            4788999999999999999999999999666    9999999999999999999864310                    


Q ss_pred             CCCccccCCCCC-----CCccccccCCCeEEEEecCC--CCCCCccceEEec-------CCCCCCCCceEEEEEEcCHHH
Q 024387          172 TGGISIYGSSFE-----DESFVLKHVGPGVLSMANAG--PNTNGSQFFICTV-------KTPWLDNRHVVFGHVIDGMDV  237 (268)
Q Consensus       172 ~gg~s~~g~~~~-----de~~~l~h~~~G~lsma~~g--p~s~gSqFfItl~-------~~~~LDg~~~VFG~VveGmdv  237 (268)
                      ..+.++++..++     +++....|+.+|+|+||+.+  +++++|||||++.       +.++||++|+|||+|++||||
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~VveG~dv  158 (176)
T cd01924          79 GQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTDGLDI  158 (176)
T ss_pred             CCCCCccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEEEecCHHH
Confidence            112334554432     44556677789999999987  7999999999998       789999999999999999999


Q ss_pred             HHHhhcC
Q 024387          238 VRKLESV  244 (268)
Q Consensus       238 L~~I~~~  244 (268)
                      |++|+..
T Consensus       159 l~~I~~g  165 (176)
T cd01924         159 LRELKVG  165 (176)
T ss_pred             HHhhcCC
Confidence            9999753

Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.

>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.7e-35  Score=271.05  Aligned_cols=162  Identities=40%  Similarity=0.661  Sum_probs=149.5

Q ss_pred             ccccccccceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCC
Q 024387           94 VELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTG  173 (268)
Q Consensus        94 ~~~~~~~~~~v~fDi~i~~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~g  173 (268)
                      ..+.|..+.+|.+     .|+.|+|-||||...||++|.||++||..||    |+|+.|||++|+|++||||++ ++|+|
T Consensus         5 ~~~EP~ttgkvil-----~TT~G~I~iELW~kE~P~acrnFiqKOGegy----y~nt~fhrlvp~f~~Qggdp~-~~gtG   74 (439)
T KOG0885|consen    5 YNLEPPTTGKVIL-----KTTKGDIDIELWAKECPKACRNFIQLCLEGY----YDNTEFHRLVPGFLVQGGDPT-GTGTG   74 (439)
T ss_pred             cccCCCccceEEE-----EeccCceeeeehhhhhhHHHHHHHHHHHhcc----ccCceeeeeccchhcccCCCC-CCCCC
Confidence            3456777778765     3667999999999999999999999999888    999999999999999999997 89999


Q ss_pred             CccccCCCCCCCcc-ccccCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEE-cCHHHHHHhhcCCCCCCCC
Q 024387          174 GISIYGSSFEDESF-VLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVI-DGMDVVRKLESVETSRTDY  251 (268)
Q Consensus       174 g~s~~g~~~~de~~-~l~h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~Vv-eGmdvL~~I~~~~td~~~~  251 (268)
                      |.+|||.+|.+|.. .+.++++|+|+|||.+.+.|||||||||++.++|+++|++||+|+ +-+..+-+|..+.++.+.|
T Consensus        75 gesiyg~~fadE~h~Rlrf~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn~lri~e~eida~~R  154 (439)
T KOG0885|consen   75 GESIYGRPFADEFHPRLRFNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYNMLRISEVEIDADDR  154 (439)
T ss_pred             ccccccccchhhcCcceeeeccceeeecccCCCCCCceEEEEecCChHhcccCceeeeecchhhhhhhhhcccccccccC
Confidence            99999999999864 678889999999999999999999999999999999999999999 4788999999999999999


Q ss_pred             CCCCeEEEeeeEec
Q 024387          252 PKVPCRIINSGELP  265 (268)
Q Consensus       252 P~~~I~I~~cGvL~  265 (268)
                      |..+-+|.+|.||.
T Consensus       155 p~~p~kI~s~EV~~  168 (439)
T KOG0885|consen  155 PVDPPKIKSVEVLI  168 (439)
T ss_pred             CCCccceeeeEeec
Confidence            99999999999983

>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3e-34  Score=264.41  Aligned_cols=150  Identities=40%  Similarity=0.610  Sum_probs=139.1

Q ss_pred             CeeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCCCccccCCCC-------CC
Q 024387          112 GKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSF-------ED  184 (268)
Q Consensus       112 ~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~-------~d  184 (268)
                      +|++|+|+|+||-+.+|.+|.||++||+..|    |+.|.||.|..+|.+|.||++ |.|.||.++|+..+       +.
T Consensus         6 eTtlGDlvIDLf~~erP~~clNFLKLCk~KY----YN~clfh~vq~~f~aQTGDPt-GtG~GG~si~~~lyG~q~rffea   80 (479)
T KOG0415|consen    6 ETTLGDLVIDLFVKERPRTCLNFLKLCKIKY----YNFCLFHTVQRDFTAQTGDPT-GTGDGGESIYGVLYGEQARFFEA   80 (479)
T ss_pred             EeecccEEeeeecccCcHHHHHHHHHHhHhh----cccceeeeccccceeecCCCC-CCCCCcceeeeecccccchhhhh
Confidence            5889999999999999999999999999666    999999999999999999998 69999999986543       44


Q ss_pred             Cc-cccccCCCeEEEEecCCCCCCCccceEEecC-CCCCCCCceEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEeee
Q 024387          185 ES-FVLKHVGPGVLSMANAGPNTNGSQFFICTVK-TPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSG  262 (268)
Q Consensus       185 e~-~~l~h~~~G~lsma~~gp~s~gSqFfItl~~-~~~LDg~~~VFG~VveGmdvL~~I~~~~td~~~~P~~~I~I~~cG  262 (268)
                      |. ..++|.+.|+|+|++.|.|.+||||||||++ ...||++|+|||+|+||+|+|.+|+.+-+|++++|.++|+|.+.-
T Consensus        81 E~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~kiNea~vD~~~rPykdIRI~HTi  160 (479)
T KOG0415|consen   81 EFLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLTKINEAIVDPKNRPYKDIRIKHTI  160 (479)
T ss_pred             hhcccccccccceEEeecCCcccccceEEEEccccccccccccceeeehhhhHHHHHHHHHHhcCCCCCcccceeeeeeE
Confidence            43 5789999999999999999999999999986 679999999999999999999999999999999999999999999


Q ss_pred             EecC
Q 024387          263 ELPL  266 (268)
Q Consensus       263 vL~~  266 (268)
                      +|++
T Consensus       161 iLdD  164 (479)
T KOG0415|consen  161 ILDD  164 (479)
T ss_pred             EecC
Confidence            9975

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.32  E-value=0.00019  Score=69.58  Aligned_cols=146  Identities=22%  Similarity=0.261  Sum_probs=114.7

Q ss_pred             eeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCCC----ccccC-CCCCC--C
Q 024387          113 KPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGG----ISIYG-SSFED--E  185 (268)
Q Consensus       113 t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg----~s~~g-~~~~d--e  185 (268)
                      ....-|.|+|+.+-.|.-++-|...|..++    +++..|.||...+++|.||.......+|    |+..+ ..|++  .
T Consensus       109 d~~s~IAVs~~~sg~i~VvD~~~d~~q~~~----fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l  184 (558)
T KOG0882|consen  109 DKISLIAVSLFKSGKIFVVDGFGDFCQDGY----FKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNL  184 (558)
T ss_pred             CeeeeEEeecccCCCcEEECCcCCcCccce----ecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccc
Confidence            334489999999999999999999999666    9999999999999999998653333233    22222 11222  4


Q ss_pred             ccccccCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEeeeE
Q 024387          186 SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGE  263 (268)
Q Consensus       186 ~~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td~~~~P~~~I~I~~cGv  263 (268)
                      ++.++|. .-++..........+-+|++.-...+.+..+..|||++..|-++++.|.+..++....|+.++.|.+...
T Consensus       185 ~~~~K~e-TdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~Vel  261 (558)
T KOG0882|consen  185 NFELKHE-TDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVEL  261 (558)
T ss_pred             ccccccc-chhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeeh
Confidence            5567773 5566666655556678899988888889999999999999999999999999999999999998887654

>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3

Probab=96.87  E-value=0.0032  Score=62.03  Aligned_cols=105  Identities=23%  Similarity=0.350  Sum_probs=68.5

Q ss_pred             eeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCCCccccCCCCCCCccccccCC
Q 024387          114 PAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVG  193 (268)
Q Consensus       114 ~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~~de~~~l~h~~  193 (268)
                      -.=.+.+||.++ +|.++++|+.+.+.|.-...|.-.+|-+   +                +...+...+.|+..  ...
T Consensus       199 IfTy~evE~~~~-~p~s~EH~la~~~~G~~~Vd~~tsTfi~---d----------------~~L~g~~~p~En~~--~R~  256 (503)
T TIGR03268       199 IFTYVEVELDPN-APVSVEHFLALMEDGTFRVDYRTSTFIS---D----------------DSLRGLDKPEENIE--KRR  256 (503)
T ss_pred             EEEEEEEEEcCC-CChhHHHHHHHHhCCeEEEeeeecceEe---c----------------ccccCccCCccccC--ccc
Confidence            334566777665 9999999999999776222222222211   1                12234445666654  335


Q ss_pred             CeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhc
Q 024387          194 PGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLES  243 (268)
Q Consensus       194 ~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~  243 (268)
                      +|+|.+.+.|.+  --..||...+.+. .-.|+|+|+|+.|||+++--++
T Consensus       257 rGtVTVRn~G~G--~G~VYIYredr~s-s~sHtvVG~V~~GiELid~a~~  303 (503)
T TIGR03268       257 RGAVTVRNSGVG--EGRVYIYREDRPS-SLSHNVVGHVTRGIELIDIAQE  303 (503)
T ss_pred             ceeEEEEeeccC--ceeEEEEcCCCCC-CcccceeEEEecceeeeecccC
Confidence            999999998843  3468887766442 3359999999999999875444

A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.

>PRK00969 hypothetical protein; Provisional

Probab=96.85  E-value=0.0031  Score=62.19  Aligned_cols=105  Identities=21%  Similarity=0.307  Sum_probs=69.1

Q ss_pred             eeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCCCccccCCCCCCCccccccCC
Q 024387          114 PAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVG  193 (268)
Q Consensus       114 ~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~~de~~~l~h~~  193 (268)
                      -.=.+.+||..+ +|.++++|+.+.+.|.-...|.-.+|-+-                   +...|...+.|++.  ...
T Consensus       202 IfTy~eve~~~~-~p~s~EH~la~~~~G~f~Vd~~tstfI~d-------------------~~L~g~~~p~En~~--~R~  259 (508)
T PRK00969        202 IFTYVEVELDPG-APKSVEHFLALLEDGTFEVDFETSTFIAD-------------------DRLQGLKIPEENFE--PRR  259 (508)
T ss_pred             EEEEEEEEEcCC-CCchHHHHHHHHhCCeEEEeeeecceEee-------------------ccccCccCCccccC--ccc
Confidence            334566777766 89999999999997762222222222111                   12234445666654  335


Q ss_pred             CeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhc
Q 024387          194 PGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLES  243 (268)
Q Consensus       194 ~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~  243 (268)
                      +|+|.+.+.|.+  .-..||...+.+. .-.|+|+|+|+.|||+++--.+
T Consensus       260 ~GtVTVRt~G~g--~G~vYIyredr~s-s~sHtvVG~V~~GiELi~~a~~  306 (508)
T PRK00969        260 RGTVTVRTAGVG--VGKVYIYREDRPS-SLSHTVVGRVTHGIELIDFAKE  306 (508)
T ss_pred             cceEEEEeeccC--ceeEEEECCCCCC-CccceeEEEEecceeeeecccC
Confidence            999999998843  4468887766442 2359999999999999875443

>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=96.57  E-value=0.0036  Score=60.09  Aligned_cols=105  Identities=25%  Similarity=0.385  Sum_probs=68.2

Q ss_pred             eeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCCCccccCCCCCCCccccccCC
Q 024387          114 PAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVG  193 (268)
Q Consensus       114 ~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~~de~~~l~h~~  193 (268)
                      -.=.+.+||.++ +|+++++|+.|...|.--..|+-..|        +.           .++......+.|++.+.  .
T Consensus       201 ifTy~eve~s~n-sP~saEH~lalmedG~lri~~~tntf--------is-----------~~~lq~~~~~~en~d~R--e  258 (512)
T COG4070         201 IFTYFEVELSRN-SPKSAEHFLALMEDGTLRIDVTTNTF--------IS-----------DDTLQEEKVPEENFDLR--E  258 (512)
T ss_pred             EEEEEEEEeCCC-CchhHHHHHHHhhcceEEEEEeccce--------ee-----------ccccccccCChhhhhhh--h
Confidence            334667777765 89999999999996651111222222        11           12233455677777654  4


Q ss_pred             CeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhc
Q 024387          194 PGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLES  243 (268)
Q Consensus       194 ~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~  243 (268)
                      +|.|...|.|-  ..-.-||.-.+.+. --.|.|.|+|++||++++--.+
T Consensus       259 rG~iTvRn~Gv--geGrvYIyRedR~s-s~sHnvVGrV~eGiELid~a~e  305 (512)
T COG4070         259 RGAITVRNVGV--GEGRVYIYREDRPS-SLSHNVVGRVIEGIELIDLAEE  305 (512)
T ss_pred             cceEEEEeeec--ccceEEEEecCCCC-ccccceeeeeecceEEEEeccc
Confidence            89999999773  33467887655432 2358999999999999875544

>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3

Probab=96.13  E-value=0.05  Score=53.81  Aligned_cols=115  Identities=20%  Similarity=0.293  Sum_probs=67.0

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCCCccccCCCCCCCccccccCCCe
Q 024387          116 GRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPG  195 (268)
Q Consensus       116 GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~~de~~~l~h~~~G  195 (268)
                      --|.|+||.+.||.++..|+++.-...+..|  -..+|=..++.++--|+..          ++..+-+||..-....+|
T Consensus       375 ~vi~IeLydd~AP~s~~yFRk~tGL~~~~VG--~L~v~F~~~d~~mFk~~~~----------~~k~LiPEN~P~~~V~ag  442 (503)
T TIGR03268       375 KVIEIELYDDNAPRSVWYFRKFTGLKTKPVG--RLPVHFAFKEMIMFKGNKE----------LAKGLIPENTPEDKVEAG  442 (503)
T ss_pred             hEEEEEEcccCCchHHHHHHHhcCCcccccc--eeEEEEEeCCeeEeccCch----------hccccCCCCCCCCccccc
Confidence            3589999999999999999998653222211  1244545566444433332          122344455444455688


Q ss_pred             EEEEecCCCCCCCccceEEecC------C-CCCCCCceEEEEEEcCHHHHHHhhcC
Q 024387          196 VLSMANAGPNTNGSQFFICTVK------T-PWLDNRHVVFGHVIDGMDVVRKLESV  244 (268)
Q Consensus       196 ~lsma~~gp~s~gSqFfItl~~------~-~~LDg~~~VFG~VveGmdvL~~I~~~  244 (268)
                      .|++-|......|- .=|-|.+      . ..+++ .-++|+|++++|.|+++.+.
T Consensus       443 ~IgvTN~a~k~~G~-IGVRl~d~defGPTGE~F~g-TNIiG~Vv~~~e~Lk~~KeG  496 (503)
T TIGR03268       443 VIGVTNQACKHVGM-IGVRLEDSDEFGPTGEPFSG-TNIIGRVVEGMERLKGLKEG  496 (503)
T ss_pred             eEeeechhhhcCce-EEEEccCCcccCCCCCCccC-cceEEEecCChhHhcccccC
Confidence            88887643211110 0111222      2 23444 45679999999999888763

A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.

>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=95.64  E-value=0.045  Score=52.74  Aligned_cols=24  Identities=25%  Similarity=0.347  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHhc
Q 024387          117 RIVMGLFGDVVPKTAENFRALCTA  140 (268)
Q Consensus       117 rIvIeL~~d~aP~tv~nF~~Lc~~  140 (268)
                      -|.||||.+.||.++..|+++..-
T Consensus       377 iieIELyed~APrSv~yFRr~t~l  400 (512)
T COG4070         377 IIEIELYEDRAPRSVWYFRRSTGL  400 (512)
T ss_pred             EEEEEecCCCCchhhHHHHhhccc
Confidence            589999999999999999998763

>PRK00969 hypothetical protein; Provisional

Probab=95.55  E-value=0.12  Score=51.39  Aligned_cols=114  Identities=18%  Similarity=0.237  Sum_probs=67.4

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCCCccccCCCCCCCccccccCCCe
Q 024387          116 GRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPG  195 (268)
Q Consensus       116 GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~~de~~~l~h~~~G  195 (268)
                      --|.||||.+.||+++..|+++.-.-.+..|  -..+|=..++.++--|+...          +..+-+||..-....+|
T Consensus       378 ~vi~IeLydd~AP~s~~yFR~~tGL~~~~VG--~L~v~F~~~d~~lFk~~~~~----------~k~liPEN~P~~~V~ag  445 (508)
T PRK00969        378 KLIEIELYDDKAPRTVWYFRKVTGLKTKPVG--KLPVYFKYEDTYLFKGNIEY----------AKGLLPENTPEDKVKAG  445 (508)
T ss_pred             HEEEEEEcCcCCchHHHHHHHhcCCcccccc--eeEEEEEeCCeEEEccChhh----------ccccCCCCCCCCccccc
Confidence            3589999999999999999998653332221  12455555665555444331          23344555555566788


Q ss_pred             EEEEecCCCCCCCccceEEecC------CC-CCCCCceEEEEEEcCHHHHHHhhcC
Q 024387          196 VLSMANAGPNTNGSQFFICTVK------TP-WLDNRHVVFGHVIDGMDVVRKLESV  244 (268)
Q Consensus       196 ~lsma~~gp~s~gSqFfItl~~------~~-~LDg~~~VFG~VveGmdvL~~I~~~  244 (268)
                      .|++-|......|- .=|-|.+      .. .+++ .-++|+|+ ++|-|+++.+.
T Consensus       446 ~IgvTN~a~k~~G~-iGVR~~d~d~fGPTGE~F~g-TNIIGrVv-~~e~Lk~lKeG  498 (508)
T PRK00969        446 EIGVTNMAAKYKGM-IGVRLSDNDEFGPTGEPFEG-TNIIGRVV-NLEKLKKLKEG  498 (508)
T ss_pred             eEeeechhhhcCce-EEEEccCCcccCCCCCCccC-ceeEEEec-ChHHhcccccC
Confidence            88877643211110 0111222      22 3444 45789999 99999888763

>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins

Probab=93.90  E-value=0.16  Score=42.77  Aligned_cols=107  Identities=22%  Similarity=0.238  Sum_probs=53.4

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcC--ceeeeCCCcCCCCCCCccccCCCCCCCccccccCC
Q 024387          116 GRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKD--FMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVG  193 (268)
Q Consensus       116 GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~--f~iqgGd~~~~~g~gg~s~~g~~~~de~~~l~h~~  193 (268)
                      -.++.+|..|.||+||+.|.+.--       |.+..+|-...+  .++.-+++..           ....-||.. .+..
T Consensus         8 ~~~~A~l~~d~AP~Tcaa~~~~LP-------~~~~~~HarwSG~ei~~~l~~~~~-----------~~~~~EN~T-~~P~   68 (147)
T PF12903_consen    8 VSFTARLLDDKAPKTCAAFWEALP-------LKGKVIHARWSGEEIWIPLPDFDP-----------FEPGRENHT-VTPI   68 (147)
T ss_dssp             EEEEEEE-TTTSHHHHHHHHHH---------EEEE-EE-SSSSSEEEEEEE--SS-----------S---S-SEE-SS--
T ss_pred             eEEEEEEcccCChHHHHHHHHhCC-------CCCcEEEEEEECcEEEEECCCcCc-----------CCCCCCcCc-ccCC
Confidence            367899999999999999999975       666666665544  2444444320           011223332 2334


Q ss_pred             CeEEEEe--c-C--CCCCC-CccceEEec--------CCCCCCCCceEEEEEEcCHHHHHHhhc
Q 024387          194 PGVLSMA--N-A--GPNTN-GSQFFICTV--------KTPWLDNRHVVFGHVIDGMDVVRKLES  243 (268)
Q Consensus       194 ~G~lsma--~-~--gp~s~-gSqFfItl~--------~~~~LDg~~~VFG~VveGmdvL~~I~~  243 (268)
                      +|-|.+-  . .  +.+.. -++.-|...        +..++-+  .+|++|++|+|-|.++-+
T Consensus        69 pGdi~~~y~~~~~~~~~pg~~~e~~i~yg~g~~~f~~~~G~l~G--N~FatI~egle~la~~~~  130 (147)
T PF12903_consen   69 PGDILLYYEPGSAWGGNPGGISETEIFYGYGNLLFASKMGWLPG--NHFATITEGLEELAEACR  130 (147)
T ss_dssp             TTEEEEE-----------E-EEEEEEE-SSS---EETTTEE--E--EEEEEEEESHHHHHHHHH
T ss_pred             CCcEEEEecCCccccCCCcceEEEEEEEeeCceEecCCccccce--eEEEEEcCCHHHHHHHHH
Confidence            6766665  1 0  00011 122223222        2233333  689999999998776654

The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	268
2bit_X	165	Crystal Structure Of Human Cyclophilin D At 1.7 A R		3e-53
3r49_A	166	Human Cyclophilin D Complexed With Quinolin-8-Amine		3e-53
2z6w_A	165	Crystal Structure Of Human Cyclophilin D In Complex		3e-53
3qyu_A	164	Crystal Structure Of Human Cyclophilin D At 1.54 A		3e-53
2esl_A	190	Human Cyclophilin C In Complex With Cyclosporin A L		3e-52
2rmc_A	182	Crystal Structure Of Murine Cyclophilin C Complexed		3e-51
1h0p_A	182	Cyclophilin_5 From C. Elegans Length = 182		2e-50
1dyw_A	173	Biochemical And Structural Characterization Of A Di		1e-49
4frv_A	185	Crystal Structure Of Mutated Cyclophilin B That Cau		1e-49
4fru_A	185	Crystal Structure Of Horse Wild-Type Cyclophilin B		2e-49
3ich_A	188	Crystal Structure Of Cyclophilin B At 1.2 A Resolut		2e-49
1cyn_A	178	Cyclophilin B Complexed With [d-(Cholinylester)ser8		2e-49
3rdd_A	184	Human Cyclophilin A Complexed With An Inhibitor Len		1e-48
2ck1_A	172	The Structure Of Oxidised Cyclophilin A From S. Man		3e-48
2haq_A	172	Crystal Structure Of Cyclophilin A From Leishmania		4e-48
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		5e-48
1xo7_A	166	Crystal Structure Of Cyclophilin From Trypanosoma C		1e-47
2wlw_A	165	Structure Of The N-Terminal Capsid Domain Of Hiv-2		1e-47
1m9e_A	164	X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-		1e-47
2rma_A	165	Crystal Structures Of Cyclophilin A Complexed With		1e-47
1bck_A	165	Human Cyclophilin A Complexed With 2-Thr Cyclospori		1e-47
5cyh_A	164	Cyclophilin A Complexed With Dipeptide Gly-Pro Leng		1e-47
4dgd_A	165	Trimcyp Cyclophilin Domain From Macaca Mulatta: H70		2e-47
2xgy_B	173	Complex Of Rabbit Endogenous Lentivirus (Relik)caps		2e-47
2alf_A	164	Crystal Structure Of Human Cypa Mutant K131a Length		2e-47
3bt8_A	172	Crystal Structure Of Mutant Cyclophilin (R147a) Fro		2e-47
3k0o_A	165	Room Temperature Structure Of Cypa Mutant Ser99thr		3e-47
1ist_A	162	Crystal Structure Of Yeast Cyclophilin A, Cpr1 Leng		3e-47
3k0r_A	165	Cryogenic Structure Of Cypa Mutant Arg55lys Length		3e-47
2x2c_K	165	Acetyl-Cypa:cyclosporine Complex Length = 165		4e-47
2x2a_A	165	Free Acetyl-Cypa Trigonal Form Length = 165		4e-47
2x25_B	169	Free Acetyl-Cypa Orthorhombic Form Length = 169		4e-47
2r99_A	173	Crystal Structure Of Cyclophilin Abh-Like Domain Of		6e-47
2x83_B	163	Evolutionary Basis Of Hiv Restriction By The Antire		6e-47
2hqj_A	183	Cyclophilin From Leishmania Major Length = 183		1e-46
1zmf_A	165	C Domain Of Human Cyclophilin-33(Hcyp33) Length = 1		2e-46
2cfe_A	162	The 1.5 A Crystal Structure Of The Malassezia Sympo		5e-46
1aws_A	164	Secypa Complexed With Hagpia (Pseudo-Symmetric Mono		7e-45
3uch_A	174	Crystal Structure Of A Hypotherical Peptidyl-Prolyl		1e-44
1qoi_A	177	U4U6 SNRNP-Specific Cyclophilin Snucyp-20 Length =		5e-44
2plu_A	186	Crystal Structure Of Cryptosporidium Parvum Cycloph		2e-42
2gw2_A	198	Crystal Structure Of The Peptidyl-Prolyl Isomerase		2e-42
2wfj_A	179	Atomic Resolution Crystal Structure Of The Ppiase D		2e-42
3pmp_A	164	Crystal Structure Of Cyclophilin A From Moniliophth		6e-42
3o7t_A	164	Crystal Structure Of Cyclophilin A From Moniliophth		7e-42
1qng_A	170	Plasmodium Falciparum Cyclophilin Complexed With Cy		8e-42
2wfi_A	179	Atomic Resolution Crystal Structure Of The Ppiase D		4e-41
1qnh_A	170	Plasmodium Falciparum Cyclophilin (Double Mutant) C		1e-40
4i9y_A	167	Structure Of The C-terminal Domain Of Nup358 Length		5e-40
1c5f_A	177	Crystal Structure Of The Cyclophilin-Like Domain Fr		7e-40
3k2c_A	193	Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isom		2e-38
1z81_A	229	Crystal Structure Of Cyclophilin From Plasmodium Yo		3e-37
2he9_A	192	Structure Of The Peptidylprolyl Isomerase Domain Of		6e-36
2c3b_A	172	The Crystal Structure Of Aspergillus Fumigatus Cycl		1e-34
2a2n_A	176	Crystal Structure Of The Peptidylprolyl Isomerase D		5e-29
1xwn_A	174	Solution Structure Of Cyclophilin Like 1(Ppil1) And		9e-28
2x7k_A	166	The Crystal Structure Of Ppil1 In Complex With Cycl		1e-27
2k7n_A	203	Solution Structure Of The Ppil1 Bound To A Fragment		1e-27
2fu0_A	160	Plasmodium Falciparum Cyclophilin Pfe0505w Putative		2e-25
1xyh_A	161	Crystal Structure Of Recombinant Human Cyclophilin		3e-25
2oju_A	167	X-Ray Structure Of Complex Of Human Cyclophilin J W		3e-25
1zkc_A	197	Crystal Structure Of The Cyclophiln_ring Domain Of		9e-24
2b71_A	196	Plasmodium Yoelii Cyclophilin-Like Protein Length =		3e-21
1w74_A	191	X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomer		2e-20
2poe_A	185	Crystal Structure Of Cryptosporidium Parvum Cycloph		2e-17
3bo7_A	201	Crystal Structure Of Toxoplasma Gondii Peptidyl-Pro		1e-15
2hq6_A	185	Structure Of The Cyclophilin_cecyp16-like Domain Of		7e-13
3t1u_A	163	Crystal Structure Of The Complex Of Cyclophilin-a E		2e-09
2nul_A	164	Peptidylprolyl Isomerase From E. Coli Length = 164		6e-09
1lop_A	164	Cyclophilin A Complexed With Succinyl-Ala-Pro-Ala-P		3e-08
3bkp_A	232	Crystal Structure Of The Toxoplasma Gondii Cyclophi		3e-06
1clh_A	166	Three-Dimensional Solution Structure Of Escherichia		3e-06
1j2a_A	166	Structure Of E. Coli Cyclophilin B K163t Mutant Len		4e-06
3s6m_A	167	The Structure Of A Peptidyl-Prolyl Cis-Trans Isomer		3e-05
2ose_A	234	Crystal Structure Of The Mimivirus Cyclophilin Leng		4e-04

>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A Resolution Length = 165

Iteration: 1
 Score =  204 bits (520), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 98/140 (70%), Positives = 110/140 (78%), Gaps = 1/140 (0%)
Query: 104 VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQX 163
           V+ DVD  GKP GR+V+ L  DVVPKTAENFRALCT GEKG+GYKG +FHR+I  FM Q 
Sbjct: 6   VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCT-GEKGFGYKGSTFHRVIPSFMCQA 64
Query: 164 XXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDN 223
                       SIYGS F DE+F LKHVGPGVLSMANAGPNTNGSQFFICT+KT WLD 
Sbjct: 65  GDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDG 124
Query: 224 RHVVFGHVIDGMDVVRKLES 243
           +HVVFGHVI+GMDVV+K+ES
Sbjct: 125 KHVVFGHVIEGMDVVKKIES 144

>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine Length = 166

Iteration: 1
 Score =  204 bits (520), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 98/140 (70%), Positives = 110/140 (78%), Gaps = 1/140 (0%)
Query: 104 VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQX 163
           V+ DVD  GKP GR+V+ L  DVVPKTAENFRALCT GEKG+GYKG +FHR+I  FM Q 
Sbjct: 7   VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCT-GEKGFGYKGSTFHRVIPSFMCQA 65
Query: 164 XXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDN 223
                       SIYGS F DE+F LKHVGPGVLSMANAGPNTNGSQFFICT+KT WLD 
Sbjct: 66  GDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDG 125
Query: 224 RHVVFGHVIDGMDVVRKLES 243
           +HVVFGHVI+GMDVV+K+ES
Sbjct: 126 KHVVFGHVIEGMDVVKKIES 145

>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With Cyclosporin A Length = 165

Iteration: 1
 Score =  204 bits (520), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 98/140 (70%), Positives = 110/140 (78%), Gaps = 1/140 (0%)
Query: 104 VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQX 163
           V+ DVD  GKP GR+V+ L  DVVPKTAENFRALCT GEKG+GYKG +FHR+I  FM Q 
Sbjct: 6   VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCT-GEKGFGYKGSTFHRVIPSFMCQA 64
Query: 164 XXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDN 223
                       SIYGS F DE+F LKHVGPGVLSMANAGPNTNGSQFFICT+KT WLD 
Sbjct: 65  GDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDG 124
Query: 224 RHVVFGHVIDGMDVVRKLES 243
           +HVVFGHVI+GMDVV+K+ES
Sbjct: 125 KHVVFGHVIEGMDVVKKIES 144

>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A Resolution At Room Temperature Length = 164

Iteration: 1
 Score =  204 bits (520), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 98/140 (70%), Positives = 110/140 (78%), Gaps = 1/140 (0%)
Query: 104 VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQX 163
           V+ DVD  GKP GR+V+ L  DVVPKTAENFRALCT GEKG+GYKG +FHR+I  FM Q 
Sbjct: 5   VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCT-GEKGFGYKGSTFHRVIPSFMCQA 63
Query: 164 XXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDN 223
                       SIYGS F DE+F LKHVGPGVLSMANAGPNTNGSQFFICT+KT WLD 
Sbjct: 64  GDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDG 123
Query: 224 RHVVFGHVIDGMDVVRKLES 243
           +HVVFGHVI+GMDVV+K+ES
Sbjct: 124 KHVVFGHVIEGMDVVKKIES 143

>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A Length = 190

Iteration: 1
 Score =  201 bits (511), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 103/167 (61%), Positives = 115/167 (68%), Gaps = 1/167 (0%)
Query: 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDF 159
           VT KVFFDV IG K  GRIV+GLFG VVPKT ENF AL T GEKGYGYKG  FHR+IKDF
Sbjct: 14  VTAKVFFDVRIGDKDVGRIVIGLFGKVVPKTVENFVALAT-GEKGYGYKGSKFHRVIKDF 72
Query: 160 MIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 219
           MIQ            +SIYG +F DE+F LKH G G +SMANAGP+TNGSQFFI   K  
Sbjct: 73  MIQGGDITTGDGTGGVSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPT 132
Query: 220 WLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPL 266
           WLD +HVVFG VIDGM VV  +E   T   D P   C IINSG++ +
Sbjct: 133 WLDGKHVVFGKVIDGMTVVHSIELQATDGHDRPLTNCSIINSGKIDV 179

>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With Immunosuppressive Drug Cyclosporin A Length = 182

Iteration: 1
 Score =  198 bits (503), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 101/167 (60%), Positives = 116/167 (69%), Gaps = 1/167 (0%)
Query: 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDF 159
           VT KVFFDV IG K  GRIV+GLFG+VVPKT ENF AL T GEKGYGYKG  FHR+IKDF
Sbjct: 6   VTDKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALAT-GEKGYGYKGSIFHRVIKDF 64
Query: 160 MIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 219
           MIQ            +SIYG +F DE+F LKH G G +SMANAGP+TNGSQFFI   K  
Sbjct: 65  MIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPT 124
Query: 220 WLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPL 266
           WLD +HVVFG V+DGM VV  +E   T   D P   C I+NSG++ +
Sbjct: 125 WLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTIVNSGKIDV 171

>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans Length = 182

Iteration: 1
 Score =  195 bits (496), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 99/169 (58%), Positives = 113/169 (66%), Gaps = 1/169 (0%)
Query: 99  KVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKD 158
           KVT +V+FD++IGGKP GRIV+GLFG  VPKTA NF  L     KG GY G  FHR+I D
Sbjct: 4   KVTDRVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKK-PKGEGYPGSKFHRVIAD 62
Query: 159 FMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKT 218
           FMIQ             SIYG  F DE+F LKH G G LSMANAG +TNGSQFFI TVKT
Sbjct: 63  FMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTVKT 122
Query: 219 PWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLD 267
           PWLD RHVVFG +++GMDVVRK+E  E    D PK    I  SG + +D
Sbjct: 123 PWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHIAVD 171

>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent Loop Cyclophilin From Caenorhabditis Elegans Length = 173

Iteration: 1
 Score =  192 bits (489), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 100/170 (58%), Positives = 118/170 (69%), Gaps = 9/170 (5%)
Query: 102 TKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYG-------YKGCSFHR 154
           +KVFFD+ IGGK +GRIVM L+ DVVPKTA NFRALCT GE G G       +KG  FHR
Sbjct: 4   SKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCT-GENGIGKSGKPLHFKGSKFHR 62
Query: 155 IIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFIC 214
           II +FMIQ             SIYG  F DE+F  KH GPGVLSMANAGPNTNGSQFF+C
Sbjct: 63  IIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLC 122
Query: 215 TVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
           TVKT WLD +HVVFG V++G+DVV+ +ES   S++  P   C I + G+L
Sbjct: 123 TVKTEWLDGKHVVFGRVVEGLDVVKAVES-NGSQSGKPVKDCMIADCGQL 171

>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes Hyperelastosis Cutis In The American Quarter Horse Length = 185

Iteration: 1
 Score =  192 bits (489), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 95/171 (55%), Positives = 119/171 (69%), Gaps = 1/171 (0%)
Query: 97  QAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRII 156
           + KVT KV+FD+ IG +  GR+V+GLFG  VPKT +NF AL T GEKG+GYK   FHR+I
Sbjct: 8   RPKVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALAT-GEKGFGYKDSKFHRVI 66
Query: 157 KDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTV 216
           KDFMIQ             SIYG  F DE+F LKH GPG +SMANAG +TNGSQFFI TV
Sbjct: 67  KDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTV 126
Query: 217 KTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLD 267
           KT WLD +HVVFG V++GM+VVRK+E+ +T   D P     I + G++ ++
Sbjct: 127 KTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTIADCGKIEVE 177

>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B Length = 185

Iteration: 1
 Score =  192 bits (488), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 95/169 (56%), Positives = 118/169 (69%), Gaps = 1/169 (0%)
Query: 99  KVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKD 158
           KVT KV+FD+ IG +  GR+V+GLFG  VPKT +NF AL T GEKG+GYK   FHR+IKD
Sbjct: 10  KVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALAT-GEKGFGYKDSKFHRVIKD 68
Query: 159 FMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKT 218
           FMIQ             SIYG  F DE+F LKH GPG +SMANAG +TNGSQFFI TVKT
Sbjct: 69  FMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKT 128
Query: 219 PWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLD 267
            WLD +HVVFG V++GM+VVRK+E+ +T   D P     I + G++ ++
Sbjct: 129 AWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTIADCGKIEVE 177

>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution Length = 188

Iteration: 1
 Score =  192 bits (488), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 95/169 (56%), Positives = 117/169 (69%), Gaps = 1/169 (0%)
Query: 99  KVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKD 158
           KVT KV+FD+ IG +  GR++ GLFG  VPKT +NF AL T GEKG+GYK   FHR+IKD
Sbjct: 13  KVTVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALAT-GEKGFGYKNSKFHRVIKD 71
Query: 159 FMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKT 218
           FMIQ             SIYG  F DE+F LKH GPG +SMANAG +TNGSQFFI TVKT
Sbjct: 72  FMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKT 131
Query: 219 PWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLD 267
            WLD +HVVFG V++GM+VVRK+ES +T   D P     I + G++ ++
Sbjct: 132 AWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKIEVE 180

>pdb|1CYN|A Chain A, Cyclophilin B Complexed With [d-(Cholinylester)ser8]-Cyclosporin Length = 178

Iteration: 1
 Score =  192 bits (487), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 95/169 (56%), Positives = 117/169 (69%), Gaps = 1/169 (0%)
Query: 99  KVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKD 158
           KVT KV+FD+ IG +  GR++ GLFG  VPKT +NF AL T GEKG+GYK   FHR+IKD
Sbjct: 3   KVTVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALAT-GEKGFGYKNSKFHRVIKD 61
Query: 159 FMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKT 218
           FMIQ             SIYG  F DE+F LKH GPG +SMANAG +TNGSQFFI TVKT
Sbjct: 62  FMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKT 121
Query: 219 PWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLD 267
            WLD +HVVFG V++GM+VVRK+ES +T   D P     I + G++ ++
Sbjct: 122 AWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKIEVE 170

>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor Length = 184

Iteration: 1
 Score =  189 bits (480), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 96/176 (54%), Positives = 114/176 (64%), Gaps = 2/176 (1%)
Query: 89  SMAKDVELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYK 148
           S  +++  Q  V   VFFD+ + G+P GR+   LF D VPKTAENFRAL T GEKG+GYK
Sbjct: 10  SGRENLYFQGMVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALST-GEKGFGYK 68
Query: 149 GCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNG 208
           G  FHRII  FM Q             SIYG  FEDE+F+LKH GPG+LSMANAGPNTNG
Sbjct: 69  GSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNG 128
Query: 209 SQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
           SQFFICT KT WLD +HVVFG V +GM++V  +E    SR         I + G+L
Sbjct: 129 SQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERF-GSRNGKTSKKITIADCGQL 183

>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni Length = 172

Iteration: 1
 Score =  188 bits (478), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 96/168 (57%), Positives = 115/168 (68%), Gaps = 2/168 (1%)
Query: 97  QAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRII 156
           Q +   +VFFD+ IG   AGRIVM L  D+VP+TAENFRALCT GE+G+GY  C FHR+I
Sbjct: 6   QKRNLPRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCT-GERGFGYHNCCFHRVI 64
Query: 157 KDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTV 216
             FM Q             SIYG  F+DE+F L+H G GVLSMAN+GPNTNGSQFFICT 
Sbjct: 65  PQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTT 124
Query: 217 KTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
           K  WLD +HVVFG V+DG +VV+K+ESV  S++   K P  I   GEL
Sbjct: 125 KCDWLDGKHVVFGRVVDGQNVVKKMESV-GSKSGKVKEPVIISRCGEL 171

>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania Donovani Length = 172

Iteration: 1
 Score =  187 bits (476), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 95/168 (56%), Positives = 113/168 (67%), Gaps = 2/168 (1%)
Query: 97  QAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRII 156
           + +VT KV+FDV I  +P GRI +GLFG   P T ENFR LCT GE G+GYK   FHR+I
Sbjct: 7   EPEVTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCT-GEHGFGYKDSIFHRVI 65
Query: 157 KDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTV 216
           ++FMIQ             SIYG  F DE+  +KH   G LSMANAGPNTNGSQFFI T 
Sbjct: 66  QNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTA 124
Query: 217 KTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
            TPWLD RHVVFG V+DGMDVV ++E  +T+  D P  P +I+ SGEL
Sbjct: 125 PTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score =  187 bits (475), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 101/170 (59%), Positives = 113/170 (66%), Gaps = 10/170 (5%)
Query: 103 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYG--------YKGCSFHR 154
           +VFFDVDIGG+  GRIV+ LF D+VPKTAENFRALCT GEKG G        +KGC FHR
Sbjct: 17  RVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCT-GEKGIGPTTGKPLHFKGCPFHR 75
Query: 155 IIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFIC 214
           IIK FMIQ             SIYG  FEDE+F  KH   G+LSMANAG NTNGSQFFI 
Sbjct: 76  IIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFIT 135
Query: 215 TVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
           TV TP LD +HVVFG VI GM V + LE+VE  + + P   C I   GEL
Sbjct: 136 TVPTPHLDGKHVVFGQVIKGMGVAKILENVEV-KGEKPAKLCVIAECGEL 184

>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi Length = 166

Iteration: 1
 Score =  186 bits (472), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 90/165 (54%), Positives = 117/165 (70%), Gaps = 2/165 (1%)
Query: 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDF 159
           VT KV+FD+ IG +P GR+V+GLFG+ VPKT ENF+ L  +GE G+GYKG  FHR+I++F
Sbjct: 4   VTDKVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLA-SGENGFGYKGSIFHRVIRNF 62
Query: 160 MIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 219
           MIQ             SIYG+ F+DE+  +KH   G +SMANAGPN+NGSQFF+ T  TP
Sbjct: 63  MIQGGDFTNFDGTGGKSIYGTRFDDENLKIKHF-VGAVSMANAGPNSNGSQFFVTTAPTP 121
Query: 220 WLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
           WLD RHVVFG V++GMDVV+K+E+ +T   D PK   +I + G L
Sbjct: 122 WLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKINDCGVL 166

>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2 Length = 165

Iteration: 1
 Score =  186 bits (472), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 94/165 (56%), Positives = 109/165 (66%), Gaps = 2/165 (1%)
Query: 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDF 159
           V   VFFD+ + G+P GR+   LF D VPKTAENFRAL T GEKG+GYKG  FHRII  F
Sbjct: 2   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALST-GEKGFGYKGSCFHRIIPGF 60
Query: 160 MIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 219
           M Q             SIYG  FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT 
Sbjct: 61  MCQGGNFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTE 120
Query: 220 WLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
           WLD +HVVFG V +GM++V  +E    SR         I + G+L
Sbjct: 121 WLDGKHVVFGKVKEGMNIVEAMERF-GSRNGKTSKKITIADCGQL 164

>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N- Terminal Domain (1-146) M-Type H87a Complex. Length = 164

Iteration: 1
 Score =  186 bits (471), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 94/165 (56%), Positives = 109/165 (66%), Gaps = 2/165 (1%)
Query: 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDF 159
           V   VFFD+ + G+P GR+   LF D VPKTAENFRAL T GEKG+GYKG  FHRII  F
Sbjct: 2   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALST-GEKGFGYKGSCFHRIIPGF 60
Query: 160 MIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 219
           M Q             SIYG  FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT 
Sbjct: 61  MCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTE 120
Query: 220 WLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
           WLD +HVVFG V +GM++V  +E    SR         I + G+L
Sbjct: 121 WLDGKHVVFGKVKEGMNIVEAMERF-GSRNGKTSKKITIADCGQL 164

>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With Cyclosporin A And N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine Cyclosporin A Length = 165

Iteration: 1
 Score =  186 bits (471), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 94/165 (56%), Positives = 109/165 (66%), Gaps = 2/165 (1%)
Query: 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDF 159
           V   VFFD+ + G+P GR+   LF D VPKTAENFRAL T GEKG+GYKG  FHRII  F
Sbjct: 2   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALST-GEKGFGYKGSCFHRIIPGF 60
Query: 160 MIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 219
           M Q             SIYG  FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT 
Sbjct: 61  MCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTE 120
Query: 220 WLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
           WLD +HVVFG V +GM++V  +E    SR         I + G+L
Sbjct: 121 WLDGKHVVFGKVKEGMNIVEAMERF-GSRNGKTSKKITIADCGQL 164

>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin Length = 165

Iteration: 1
 Score =  186 bits (471), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 94/165 (56%), Positives = 109/165 (66%), Gaps = 2/165 (1%)
Query: 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDF 159
           V   VFFD+ + G+P GR+   LF D VPKTAENFRAL T GEKG+GYKG  FHRII  F
Sbjct: 2   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALST-GEKGFGYKGSCFHRIIPGF 60
Query: 160 MIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 219
           M Q             SIYG  FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT 
Sbjct: 61  MCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTE 120
Query: 220 WLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
           WLD +HVVFG V +GM++V  +E    SR         I + G+L
Sbjct: 121 WLDGKHVVFGKVKEGMNIVEAMERF-GSRNGKTSKKITIADCGQL 164

>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro Length = 164

Iteration: 1
 Score =  186 bits (471), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 94/165 (56%), Positives = 109/165 (66%), Gaps = 2/165 (1%)
Query: 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDF 159
           V   VFFD+ + G+P GR+   LF D VPKTAENFRAL T GEKG+GYKG  FHRII  F
Sbjct: 1   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALST-GEKGFGYKGSCFHRIIPGF 59
Query: 160 MIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 219
           M Q             SIYG  FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT 
Sbjct: 60  MCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTE 119
Query: 220 WLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
           WLD +HVVFG V +GM++V  +E    SR         I + G+L
Sbjct: 120 WLDGKHVVFGKVKEGMNIVEAMERF-GSRNGKTSKKITIADCGQL 163

>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c Mutant Length = 165

Iteration: 1
 Score =  186 bits (471), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 94/165 (56%), Positives = 109/165 (66%), Gaps = 2/165 (1%)
Query: 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDF 159
           V   VFFD+ + G+P GR+   LF D VPKTAENFRAL T GEKG+GYKG  FHRII  F
Sbjct: 2   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALST-GEKGFGYKGSCFHRIIPGF 60
Query: 160 MIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 219
           M Q             SIYG  FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT 
Sbjct: 61  MCQGGNFTHCNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTE 120
Query: 220 WLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
           WLD +HVVFG V +GM++V  +E    SR         I + G+L
Sbjct: 121 WLDGKHVVFGKVKEGMNIVEAMERF-GSRNGKTSKKITIADCGQL 164

>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With Cyclophilin A Length = 173

Iteration: 1
 Score =  186 bits (471), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 94/165 (56%), Positives = 109/165 (66%), Gaps = 2/165 (1%)
Query: 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDF 159
           V   VFFD+ + G+P GR+   LF D VPKTAENFRAL T GEKG+GYKG  FHRII  F
Sbjct: 10  VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALST-GEKGFGYKGSCFHRIIPGF 68
Query: 160 MIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 219
           M Q             SIYG  FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT 
Sbjct: 69  MCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTE 128
Query: 220 WLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
           WLD +HVVFG V +GM++V  +E    SR         I + G+L
Sbjct: 129 WLDGKHVVFGKVKEGMNIVEAMERF-GSRNGKTSKKITIADCGQL 172

>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a Length = 164

Iteration: 1
 Score =  185 bits (470), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 94/165 (56%), Positives = 109/165 (66%), Gaps = 2/165 (1%)
Query: 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDF 159
           V   VFFD+ + G+P GR+   LF D VPKTAENFRAL T GEKG+GYKG  FHRII  F
Sbjct: 1   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALST-GEKGFGYKGSCFHRIIPGF 59
Query: 160 MIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 219
           M Q             SIYG  FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT 
Sbjct: 60  MCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTK 119
Query: 220 WLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
           WLD +HVVFG V +GM++V  +E    SR         I + G+L
Sbjct: 120 WLDGKHVVFGAVKEGMNIVEAMERF-GSRNGKTSKKITIADCGQL 163

>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From Leishmania Donovani Length = 172

Iteration: 1
 Score =  185 bits (470), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 94/168 (55%), Positives = 112/168 (66%), Gaps = 2/168 (1%)
Query: 97  QAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRII 156
           + +VT KV+FDV I  +P GRI +GLFG   P T ENFR LCT GE G+GYK   FHR+I
Sbjct: 7   EPEVTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCT-GEHGFGYKDSIFHRVI 65
Query: 157 KDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTV 216
           ++FMIQ             SIYG  F DE+  +KH   G LSMANAGPNTNGSQFFI T 
Sbjct: 66  QNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTA 124
Query: 217 KTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
            TPWLD  HVVFG V+DGMDVV ++E  +T+  D P  P +I+ SGEL
Sbjct: 125 PTPWLDGAHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172

>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr Length = 165

Iteration: 1
 Score =  185 bits (469), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 93/165 (56%), Positives = 109/165 (66%), Gaps = 2/165 (1%)
Query: 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDF 159
           V   VFFD+ + G+P GR+   LF D VPKTAENFRAL T GEKG+GYKG  FHRII  F
Sbjct: 2   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALST-GEKGFGYKGSCFHRIIPGF 60
Query: 160 MIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 219
           M Q             SIYG  FEDE+F+LKH GPG+L+MANAGPNTNGSQFFICT KT 
Sbjct: 61  MCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILTMANAGPNTNGSQFFICTAKTE 120
Query: 220 WLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
           WLD +HVVFG V +GM++V  +E    SR         I + G+L
Sbjct: 121 WLDGKHVVFGKVKEGMNIVEAMERF-GSRNGKTSKKITIADCGQL 164

>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1 Length = 162

Iteration: 1
 Score =  185 bits (469), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 92/163 (56%), Positives = 113/163 (69%), Gaps = 2/163 (1%)
Query: 102 TKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMI 161
           ++V+FDV+  G+P GR+V  L+ D+VPKTAENFRALCT GEKG+GY G  FHR+I DFM+
Sbjct: 2   SQVYFDVEADGQPIGRVVFKLYNDIVPKTAENFRALCT-GEKGFGYAGSPFHRVIPDFML 60
Query: 162 QXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWL 221
           Q             SIYG  F DE+F   H  PG+LSMANAGPNTNGSQFFI TV  PWL
Sbjct: 61  QGGDFTAGNGTGGKSIYGGKFPDENFKKHHDRPGLLSMANAGPNTNGSQFFITTVPCPWL 120
Query: 222 DNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
           D +HVVFG V+DG D+V+K+ES+  S +   K    +  SGEL
Sbjct: 121 DGKHVVFGEVVDGYDIVKKVESL-GSPSGATKARIVVAKSGEL 162

>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys Length = 165

Iteration: 1
 Score =  184 bits (468), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 93/165 (56%), Positives = 109/165 (66%), Gaps = 2/165 (1%)
Query: 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDF 159
           V   VFFD+ + G+P GR+   LF D VPKTAENFRAL T GEKG+GYKG  FH+II  F
Sbjct: 2   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALST-GEKGFGYKGSCFHKIIPGF 60
Query: 160 MIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 219
           M Q             SIYG  FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT 
Sbjct: 61  MCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTE 120
Query: 220 WLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
           WLD +HVVFG V +GM++V  +E    SR         I + G+L
Sbjct: 121 WLDGKHVVFGKVKEGMNIVEAMERF-GSRNGKTSKKITIADCGQL 164

>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex Length = 165

Iteration: 1
 Score =  184 bits (468), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 94/165 (56%), Positives = 108/165 (65%), Gaps = 2/165 (1%)
Query: 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDF 159
           V   VFFD+ + G+P GR+   LF D VPKTAENFRAL T GEKG+GYKG  FHRII  F
Sbjct: 2   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALST-GEKGFGYKGSCFHRIIPGF 60
Query: 160 MIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 219
           M Q             SIYG  FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT 
Sbjct: 61  MCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTE 120
Query: 220 WLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
           WLD  HVVFG V +GM++V  +E    SR         I + G+L
Sbjct: 121 WLDGXHVVFGKVKEGMNIVEAMERF-GSRNGKTSKKITIADCGQL 164

>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form Length = 165

Iteration: 1
 Score =  184 bits (468), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 94/165 (56%), Positives = 108/165 (65%), Gaps = 2/165 (1%)
Query: 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDF 159
           V   VFFD+ + G+P GR+   LF D VPKTAENFRAL T GEKG+GYKG  FHRII  F
Sbjct: 2   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALST-GEKGFGYKGSCFHRIIPGF 60
Query: 160 MIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 219
           M Q             SIYG  FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT 
Sbjct: 61  MCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTK 120
Query: 220 WLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
           WLD  HVVFG V +GM++V  +E    SR         I + G+L
Sbjct: 121 WLDGXHVVFGKVKEGMNIVEAMERF-GSRNGKTSKKITIADCGQL 164

>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form Length = 169

Iteration: 1
 Score =  184 bits (467), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 94/165 (56%), Positives = 108/165 (65%), Gaps = 2/165 (1%)
Query: 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDF 159
           V   VFFD+ + G+P GR+   LF D VPKTAENFRAL T GEKG+GYKG  FHRII  F
Sbjct: 6   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALST-GEKGFGYKGSCFHRIIPGF 64
Query: 160 MIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 219
           M Q             SIYG  FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT 
Sbjct: 65  MCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTK 124
Query: 220 WLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
           WLD  HVVFG V +GM++V  +E    SR         I + G+L
Sbjct: 125 WLDGXHVVFGKVKEGMNIVEAMERF-GSRNGKTSKKITIADCGQL 168

>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human Peptidylprolyl Isomerase E Isoform 1 Length = 173

Iteration: 1
 Score =  184 bits (466), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 92/170 (54%), Positives = 116/170 (68%), Gaps = 2/170 (1%)
Query: 94  VELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFH 153
           +  +A+   +V+ D+ IG KPAGRI M L  DVVP TAENFR LCT  EKG+G+KG SFH
Sbjct: 4   IAKKARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTH-EKGFGFKGSSFH 62
Query: 154 RIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFI 213
           RII  FM Q             SIYG  F+DE+F+LKH GPG+LSMAN+GPNTNGSQFF+
Sbjct: 63  RIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFL 122
Query: 214 CTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGE 263
              KT WLD +HVVFG V +G+DV+R++E+ + S+   PK    I + GE
Sbjct: 123 TCDKTDWLDGKHVVFGEVTEGLDVLRQIEA-QGSKDGKPKQKVIIADCGE 171

>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The Antiretroviral Trimcyp Length = 163

Iteration: 1
 Score =  184 bits (466), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 93/165 (56%), Positives = 109/165 (66%), Gaps = 2/165 (1%)
Query: 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDF 159
           V   VFFD+ + G+P GR+   LF D VPKTAENFRAL T GEKG+GYKG  FHRII  F
Sbjct: 1   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALST-GEKGFGYKGSCFHRIIPGF 59
Query: 160 MIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 219
           M Q             SIYG  FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT 
Sbjct: 60  MCQGGDFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTE 119
Query: 220 WLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
           WLD +HVVFG V +GM++V  ++    SR         I + G+L
Sbjct: 120 WLDGKHVVFGKVKEGMNIVEAMKRF-GSRNGKTSKKITIADCGQL 163

>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major Length = 183

Iteration: 1
 Score =  182 bits (463), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 102/177 (57%), Positives = 116/177 (65%), Gaps = 16/177 (9%)
Query: 103 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYG-------YKGCSFHRI 155
           KVFFD+ I  K AGRIVM L+ D VPKTAENFRALCT GEKG G       YK   FHR+
Sbjct: 9   KVFFDISIDNKAAGRIVMELYADTVPKTAENFRALCT-GEKGKGRSGKPLHYKSSVFHRV 67
Query: 156 IKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLK---HVGPGVLSMANAGPNTNGSQFF 212
           I +FMIQ             SIYG++F DESF  K   H G G LSMANAGPNTNGSQFF
Sbjct: 68  IPNFMIQGGDFTRGNGTGGESIYGTTFRDESFSGKAGRHTGLGCLSMANAGPNTNGSQFF 127
Query: 213 ICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINS--GELPLD 267
           ICT  TPWLD +HVVFG VIDG+DVV+K+E + +S     K   RI+ S  GE+  D
Sbjct: 128 ICTAATPWLDGKHVVFGRVIDGLDVVKKVERLGSSSG---KTRSRIVVSDCGEVAAD 181

>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33) Length = 165

Iteration: 1
 Score =  182 bits (461), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 91/161 (56%), Positives = 112/161 (69%), Gaps = 2/161 (1%)
Query: 103 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQ 162
           +V+ D+ IG KPAGRI M L  DVVP TAENFR LCT  EKG+G+KG SFHRII  FM Q
Sbjct: 5   QVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTH-EKGFGFKGSSFHRIIPQFMCQ 63
Query: 163 XXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLD 222
                        SIYG  F+DE+F+LKH GPG+LSMAN+GPNTNGSQFF+   KT WLD
Sbjct: 64  GGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLD 123
Query: 223 NRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGE 263
            +HVVFG V +G+DV+R++E+ + S+   PK    I + GE
Sbjct: 124 GKHVVFGEVTEGLDVLRQIEA-QGSKDGKPKQKVIIADCGE 163

>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis Mala S 6 Allergen, A Member Of The Cyclophilin Pan- Allergen Family Length = 162

Iteration: 1
 Score =  181 bits (458), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 93/161 (57%), Positives = 108/161 (67%), Gaps = 2/161 (1%)
Query: 102 TKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMI 161
           + VFFD+   G P G I   LF DVVPKTA NFRALCT GEKG+GY G  FHR+I DFM+
Sbjct: 2   SNVFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCT-GEKGFGYAGSHFHRVIPDFML 60
Query: 162 QXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWL 221
           Q             SIYG+ F DE+F LKH  PG+LSMANAGPNTNGSQFFI TV T WL
Sbjct: 61  QGGDFTAGNGTGGKSIYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFITTVVTSWL 120
Query: 222 DNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSG 262
           D +HVVFG VIDGM+VV+ +E+ E S +  P+    I   G
Sbjct: 121 DGKHVVFGEVIDGMNVVKAIEA-EGSGSGKPRSRIEIAKCG 160

>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer) Length = 164

Iteration: 1
 Score =  177 bits (448), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 91/165 (55%), Positives = 105/165 (63%), Gaps = 2/165 (1%)
Query: 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDF 159
           V   VFFD+ + G+P GR+   LF D VPKTAENFRAL T GEKG+GYKG  FHRII  F
Sbjct: 1   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALST-GEKGFGYKGSCFHRIIPGF 59
Query: 160 MIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 219
             Q             SIYG  FEDE+F+LKH GPG+LS ANAGPNTNGSQFFICT KT 
Sbjct: 60  XCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSXANAGPNTNGSQFFICTAKTE 119
Query: 220 WLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
           WLD +HVVFG V +G ++V   E    SR         I + G+L
Sbjct: 120 WLDGKHVVFGKVKEGXNIVEAXERF-GSRNGKTSKKITIADCGQL 163

>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A Resolution Length = 174

Iteration: 1
 Score =  176 bits (445), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 89/170 (52%), Positives = 113/170 (66%), Gaps = 2/170 (1%)
Query: 94  VELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFH 153
           +  +A+   +V+ D+ IG KPAGRI   L  DVVP TAENFR LCT  EKG+G+KG SFH
Sbjct: 5   IAKKARSNPQVYXDIKIGNKPAGRIQXLLRSDVVPXTAENFRCLCTH-EKGFGFKGSSFH 63
Query: 154 RIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFI 213
           RII  F  Q             SIYG  F+DE+F+LKH GPG+LS AN+GPNTNGSQFF+
Sbjct: 64  RIIPQFXCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSXANSGPNTNGSQFFL 123
Query: 214 CTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGE 263
              KT WLD +HVVFG V +G+DV+R++E+ + S+   PK    I + GE
Sbjct: 124 TCDKTDWLDGKHVVFGEVTEGLDVLRQIEA-QGSKDGKPKQKVIIADCGE 172

>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20 Length = 177

Iteration: 1
 Score =  174 bits (441), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 89/169 (52%), Positives = 109/169 (64%), Gaps = 4/169 (2%)
Query: 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKG----YGYKGCSFHRI 155
           V   VFFDV IGG+  GR+ + LF DVVPKTAENFR  CT   +      GYKG +FHR+
Sbjct: 9   VNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRV 68
Query: 156 IKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICT 215
           IKDFMIQ             SIY   F DE+F L+H  PG+LSMAN+GP+TNG QFFI  
Sbjct: 69  IKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITC 128
Query: 216 VKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
            K  WLD +HVVFG +IDG+ V+RK+E+V T   + PK+P  I   GE+
Sbjct: 129 SKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177

>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120 Length = 186

Iteration: 1
 Score =  169 bits (427), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 90/160 (56%), Positives = 101/160 (63%), Gaps = 8/160 (5%)
Query: 104 VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYG-------YKGCSFHRII 156
           V+FD+ IG  PAGRI M LF D VP TAENFRALCT GEKG G       Y G  FHRII
Sbjct: 22  VYFDISIGQTPAGRITMELFADKVPITAENFRALCT-GEKGMGQSGKPLCYTGSFFHRII 80
Query: 157 KDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTV 216
             FMIQ             SIYGS F DE+FV  H  P +LSMANAGPNTNGSQFFI TV
Sbjct: 81  PQFMIQGGDFTRGDGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFITTV 140
Query: 217 KTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPC 256
             PWLD +HVVFG V++GM+VV+ +E   +      K  C
Sbjct: 141 PCPWLDGKHVVFGKVLEGMEVVKSIEKCGSQNGKPTKSVC 180

>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain Of Human Cyclophilin G Length = 198

Iteration: 1
 Score =  169 bits (427), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 89/170 (52%), Positives = 106/170 (62%), Gaps = 9/170 (5%)
Query: 103 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYG--------YKGCSFHR 154
           + FFD+ I  +PAGR+V  LF DV PKT ENFR LCT GEKG G        YK C FHR
Sbjct: 28  RCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCT-GEKGTGKSTQKPLHYKSCLFHR 86
Query: 155 IIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFIC 214
           ++KDFM+Q             SIYG  FEDESF +KH    +LSMAN G +TNGSQFFI 
Sbjct: 87  VVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNAAFLLSMANRGKDTNGSQFFIT 146
Query: 215 TVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
           T  TP LD  HVVFG VI G +VVR++E+ +T     P    RI++ GEL
Sbjct: 147 TKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 196

>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain Of Human Cyclophilin G In Complex With Cyclosporin A Length = 179

Iteration: 1
 Score =  169 bits (427), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 89/170 (52%), Positives = 106/170 (62%), Gaps = 9/170 (5%)
Query: 103 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYG--------YKGCSFHR 154
           + FFD+ I  +PAGR+V  LF DV PKT ENFR LCT GEKG G        YK C FHR
Sbjct: 11  RCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCT-GEKGTGKSTQKPLHYKSCLFHR 69
Query: 155 IIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFIC 214
           ++KDFM+Q             SIYG  FEDESF +KH    +LSMAN G +TNGSQFFI 
Sbjct: 70  VVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFIT 129
Query: 215 TVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
           T  TP LD  HVVFG VI G +VVR++E+ +T     P    RI++ GEL
Sbjct: 130 TKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179

>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora Perniciosa In Complex With Cyclosporin A Length = 164

Iteration: 1
 Score =  167 bits (423), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 80/139 (57%), Positives = 97/139 (69%), Gaps = 1/139 (0%)
Query: 104 VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQX 163
           VFF++ I  KP GRIV  L+ + VPKTA+NFR L T G+ G+GYK   FHR+I  FM+Q 
Sbjct: 5   VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELAT-GQHGFGYKDSIFHRVIPQFMLQG 63
Query: 164 XXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDN 223
                       SIYG  F DE+F +KH  PG+LSMANAG NTNGSQFFI TV T WLD 
Sbjct: 64  GDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDG 123
Query: 224 RHVVFGHVIDGMDVVRKLE 242
           +HVVFG VI+G+D+VRK+E
Sbjct: 124 KHVVFGEVIEGLDIVRKVE 142

>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora Perniciosa Length = 164

Iteration: 1
 Score =  167 bits (422), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 80/139 (57%), Positives = 97/139 (69%), Gaps = 1/139 (0%)
Query: 104 VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQX 163
           VFF++ I  KP GRIV  L+ + VPKTA+NFR L T G+ G+GYK   FHR+I  FM+Q 
Sbjct: 6   VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELAT-GQHGFGYKDSIFHRVIPQFMLQG 64
Query: 164 XXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDN 223
                       SIYG  F DE+F +KH  PG+LSMANAG NTNGSQFFI TV T WLD 
Sbjct: 65  GDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDG 124
Query: 224 RHVVFGHVIDGMDVVRKLE 242
           +HVVFG VI+G+D+VRK+E
Sbjct: 125 KHVVFGEVIEGLDIVRKVE 143

>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With Cyclosporin A Length = 170

Iteration: 1
 Score =  167 bits (422), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 89/168 (52%), Positives = 107/168 (63%), Gaps = 6/168 (3%)
Query: 102 TKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTA---GEKGYG--YKGCSFHRII 156
           +KVFFD+ I    AGRI+  LF D+ P+T ENFRALCT    G +G    YK   FHRII
Sbjct: 4   SKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRII 63
Query: 157 KDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTV 216
             FM Q             SIYG SF DE+F +KH  PG+LSMANAGPNTN SQFFI  V
Sbjct: 64  PQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLV 123
Query: 217 KTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
             PWLD +HVVFG VI+GM+VVR++E  E +++ Y K    I + GEL
Sbjct: 124 PCPWLDGKHVVFGKVIEGMNVVREMEK-EGAKSGYVKRSVVITDCGEL 170

>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain Of Human Cyclophilin G Length = 179

Iteration: 1
 Score =  164 bits (416), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 88/170 (51%), Positives = 105/170 (61%), Gaps = 9/170 (5%)
Query: 103 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYG--------YKGCSFHR 154
           + FFD+ I  +PAGR+V  LF DV PKT ENFR LCT GEKG G        YK   FHR
Sbjct: 11  RCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCT-GEKGTGKSTQKPLHYKSXLFHR 69
Query: 155 IIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFIC 214
           ++KDFM+Q             SIYG  FEDESF +KH    +LSMAN G +TNGSQFFI 
Sbjct: 70  VVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFIT 129
Query: 215 TVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
           T  TP LD  HVVFG VI G +VVR++E+ +T     P    RI++ GEL
Sbjct: 130 TKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179

>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant) Complexed With Cyclosporin A Length = 170

Iteration: 1
 Score =  163 bits (412), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 87/168 (51%), Positives = 105/168 (62%), Gaps = 6/168 (3%)
Query: 102 TKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTA---GEKGYG--YKGCSFHRII 156
           +KVFFD+ I    AGRI+  LF D+ P+T ENFRALCT    G +G    YK   FHRII
Sbjct: 4   SKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRII 63
Query: 157 KDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTV 216
             FM Q             SIYG SF DE+F +KH  PG+LSMANAGPNTN SQF I  V
Sbjct: 64  PQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFLITLV 123
Query: 217 KTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
             PWLD +HVVFG VI+GM+VVR++E  E +++ Y K    I + GE 
Sbjct: 124 PCPWLDGKHVVFGKVIEGMNVVREMEK-EGAKSGYVKRSVVITDCGEW 170

>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358 Length = 167

Iteration: 1
 Score =  160 bits (406), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 82/140 (58%), Positives = 96/140 (68%), Gaps = 1/140 (0%)
Query: 104 VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQX 163
           VFFDV   G+P GRI M LF ++VP+TAENFRALCT GEKG+G+K   FHR+I DF+ Q 
Sbjct: 9   VFFDVCADGEPLGRITMELFSNIVPRTAENFRALCT-GEKGFGFKNSIFHRVIPDFVCQG 67
Query: 164 XXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDN 223
                       SIYG  FEDE+F +KH GPG+LSMAN G NTN SQF I   K   LD 
Sbjct: 68  GDITKHDGTGGQSIYGDKFEDENFDVKHTGPGLLSMANQGQNTNNSQFVITLKKAEHLDF 127
Query: 224 RHVVFGHVIDGMDVVRKLES 243
           +HVVFG V DGMD V+K+ES
Sbjct: 128 KHVVFGFVKDGMDTVKKIES 147

>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From Brugia Malayi Complexed With Cyclosporin A Length = 177

Iteration: 1
 Score =  160 bits (405), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 87/177 (49%), Positives = 107/177 (60%), Gaps = 9/177 (5%)
Query: 96  LQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYG--------Y 147
           +  K   +VF DV I G  AGRIVM L+ D+ P+T  NF  LCT G  G G        Y
Sbjct: 1   MSKKDRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCT-GMAGTGKISGKPLHY 59
Query: 148 KGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTN 207
           KG +FHR+IK+FMIQ             SIYG  F+DE FV+KH  P V+SMAN GPNTN
Sbjct: 60  KGSTFHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTN 119
Query: 208 GSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
           GSQFFI T   P L+N HVVFG V+ G +VV K+E ++T+  + P     I+N GEL
Sbjct: 120 GSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGEL 176

>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase From Encephalitozoon Cuniculi At 1.9 A Resolution Length = 193

Iteration: 1
 Score =  155 bits (393), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 82/153 (53%), Positives = 97/153 (63%), Gaps = 7/153 (4%)
Query: 89  SMAKDVELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYK 148
           SMAK+       +  V+FDV    +  GRIVM L  D+VPKTA+NFR LC    KG GYK
Sbjct: 21  SMAKEA------SGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCER-PKGEGYK 73
Query: 149 GCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNG 208
           G +FHRII  FM+Q             SIYG  F DE+F LKH   G+LSMAN G +TNG
Sbjct: 74  GSTFHRIIPGFMVQGGDYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNG 133
Query: 209 SQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKL 241
           SQFFI   KT WLD +HVVFG V++GMDVV K+
Sbjct: 134 SQFFITLGKTQWLDEKHVVFGEVVEGMDVVHKI 166

>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii Length = 229

Iteration: 1
 Score =  151 bits (382), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 77/168 (45%), Positives = 105/168 (62%), Gaps = 7/168 (4%)
Query: 104 VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEK----GYGYKGCSFHRIIKDF 159
           VF D+++G    G+    LF ++VPKT+ENFR  CT   K      GYK   FHR+IK+F
Sbjct: 62  VFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEF 121
Query: 160 MIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 219
           MIQ            +SIYG  F+DE+F +KH   G+LSMAN+GPNTNG QFFI T K  
Sbjct: 122 MIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCE 181
Query: 220 WLDNRHVVFGHVIDG--MDVVRKLESVETSRTDY-PKVPCRIINSGEL 264
           WLD ++VVFG +ID   + +++K+E+V  +   Y PK+P  ++  GEL
Sbjct: 182 WLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGEL 229

>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The Human Nk-Tumour Recognition Protein Length = 192

Iteration: 1
 Score =  147 bits (371), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 78/167 (46%), Positives = 103/167 (61%), Gaps = 9/167 (5%)
Query: 106 FDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYG--------YKGCSFHRIIK 157
           FD++I  +P GRI+  LF D+ PKT +NF  LC+ GEKG G        YKG +FHR++K
Sbjct: 24  FDIEINREPVGRIMFQLFSDICPKTCKNFLCLCS-GEKGLGKTTGKKLCYKGSTFHRVVK 82
Query: 158 DFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVK 217
           +FMIQ             SIYG  F+DE+F+LKH    +LSMAN G +TNGSQFFI T  
Sbjct: 83  NFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITTKP 142
Query: 218 TPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
            P LD  HVVFG VI G +V+ ++E+++T     P    R+I+ G L
Sbjct: 143 APHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGVL 189

>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin Reveals 3d Domain Swapping Of A Central Element Length = 172

Iteration: 1
 Score =  143 bits (360), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 84/173 (48%), Positives = 103/173 (59%), Gaps = 13/173 (7%)
Query: 102 TKVFFDVD-----IGGKPAGRIVMGLFGDVVPKTAENFRALCT--AGEKGYGYKGCSFHR 154
           ++VFFDV+           GRIV  LF   VPKTA+NFR LC   AGE   GY+  +FHR
Sbjct: 3   SQVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGE---GYRESTFHR 59
Query: 155 IIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFIC 214
           II +FMIQ             SIYG  F DE+F  KH   G+LSMANAGPNTNGSQFFI 
Sbjct: 60  IIPNFMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFIT 119
Query: 215 TVKTPWLDNRHVVFGHVID--GMDVVRKLESV-ETSRTDYPKVPCRIINSGEL 264
           T  T WLD +HVVFG V D     VV+++E++  +S +       +I+N GEL
Sbjct: 120 TAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGEL 172

>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain Of Human Ppwd1 Length = 176

Iteration: 1
 Score =  124 bits (311), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 74/147 (50%), Positives = 86/147 (58%), Gaps = 7/147 (4%)
Query: 116 GRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXI 175
           G I   LF    PKT ENF   C     GY Y G +FHRIIK FMIQ             
Sbjct: 31  GDIHTKLFPVECPKTVENF---CVHSRNGY-YNGHTFHRIIKGFMIQTGDPTGTGMGGE- 85
Query: 176 SIYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDG 234
           SI+G  FEDE    L+H  P  LSMANAG NTNGSQFFI  V TPWLDN+H VFG V  G
Sbjct: 86  SIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKG 145
Query: 235 MDVVRKLESVETS-RTDYPKVPCRIIN 260
           M+VV+++ +V+ + +TD P     IIN
Sbjct: 146 MEVVQRISNVKVNPKTDKPYEDVSIIN 172

>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And Insights Into Its Interaction With Skip Length = 174

Iteration: 1
 Score =  120 bits (300), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 68/147 (46%), Positives = 85/147 (57%), Gaps = 6/147 (4%)
Query: 116 GRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXI 175
           G IV+ L+    PKT +NF  L     +GY Y G  FHRIIKDFMIQ             
Sbjct: 21  GIIVLELYWKHAPKTCKNFAELA---RRGY-YNGTKFHRIIKDFMIQGGDPTGTGRGGA- 75
Query: 176 SIYGSSFEDESFV-LKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDG 234
           SIYG  FEDE    LK  G G+L+MANAGP+TNGSQFF+    T WLD +H +FG V  G
Sbjct: 76  SIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQG 135
Query: 235 MDVVRKLESVETSRTDYPKVPCRIINS 261
           + +V ++  VET+  D P    +II +
Sbjct: 136 IGMVNRVGMVETNSQDRPVDDVKIIKA 162

>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With Cyclosporine A Suggests A Binding Mode For Skip Length = 166

Iteration: 1
 Score =  120 bits (300), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 68/147 (46%), Positives = 85/147 (57%), Gaps = 6/147 (4%)
Query: 116 GRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXI 175
           G IV+ L+    PKT +NF  L     +GY Y G  FHRIIKDFMIQ             
Sbjct: 21  GIIVLELYWKHAPKTCKNFAELA---RRGY-YNGTKFHRIIKDFMIQGGDPTGTGRGGA- 75
Query: 176 SIYGSSFEDESFV-LKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDG 234
           SIYG  FEDE    LK  G G+L+MANAGP+TNGSQFF+    T WLD +H +FG V  G
Sbjct: 76  SIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQG 135
Query: 235 MDVVRKLESVETSRTDYPKVPCRIINS 261
           + +V ++  VET+  D P    +II +
Sbjct: 136 IGMVNRVGMVETNSQDRPVDDVKIIKA 162

>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of Skip Length = 203

Iteration: 1
 Score =  120 bits (300), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 68/147 (46%), Positives = 85/147 (57%), Gaps = 6/147 (4%)
Query: 116 GRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXI 175
           G IV+ L+    PKT +NF  L     +GY Y G  FHRIIKDFMIQ             
Sbjct: 21  GIIVLELYWKHAPKTCKNFAELA---RRGY-YNGTKFHRIIKDFMIQGGDPTGTGRGGA- 75
Query: 176 SIYGSSFEDESFV-LKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDG 234
           SIYG  FEDE    LK  G G+L+MANAGP+TNGSQFF+    T WLD +H +FG V  G
Sbjct: 76  SIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQG 135
Query: 235 MDVVRKLESVETSRTDYPKVPCRIINS 261
           + +V ++  VET+  D P    +II +
Sbjct: 136 IGMVNRVGMVETNSQDRPVDDVKIIKA 162

>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative Cyclosporin- Binding Domain Length = 160

Iteration: 1
 Score =  112 bits (281), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/146 (44%), Positives = 79/146 (54%), Gaps = 6/146 (4%)
Query: 116 GRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXI 175
           G I + LF     KT +NF      G     Y  C FHR+IK FM+Q             
Sbjct: 15  GDIHISLFYKECKKTVQNFSVHSINGY----YNNCIFHRVIKHFMVQTGDPSGDGTGGE- 69
Query: 176 SIYGSSFEDESFV-LKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDG 234
           SI+G+ FEDE F  L H  P ++SMAN GPNTNGSQFFI TV  PWLD +H VFG V  G
Sbjct: 70  SIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQG 129
Query: 235 MDVVRKLESVETSRTDYPKVPCRIIN 260
             +V  +E V T + D P    +I+N
Sbjct: 130 SKIVLDIEKVRTDKRDKPLEDIKILN 155

>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J Length = 161

Iteration: 1
 Score =  112 bits (279), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 65/138 (47%), Positives = 80/138 (57%), Gaps = 6/138 (4%)
Query: 115 AGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXX 174
            G I + +F +  PKT ENF ALC +      Y GC FHR IK FM+Q            
Sbjct: 9   VGDIKIEVFCERTPKTCENFLALCASNY----YNGCIFHRNIKGFMVQTGDPTGTGRGGN 64
Query: 175 ISIYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVID 233
            SI+G  FEDE S  LKH   GV+SMAN GPNTNGSQFFI   K P LD ++ VFG VID
Sbjct: 65  -SIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVID 123
Query: 234 GMDVVRKLESVETSRTDY 251
           G++ + +LE +  +   Y
Sbjct: 124 GLETLDELEKLPVNEKTY 141

>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With Cyclosporin A Length = 167

Iteration: 1
 Score =  112 bits (279), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 65/137 (47%), Positives = 80/137 (58%), Gaps = 6/137 (4%)
Query: 116 GRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXI 175
           G I + +F +  PKT ENF ALC +      Y GC FHR IK FM+Q             
Sbjct: 16  GDIKIEVFCERTPKTCENFLALCASNY----YNGCIFHRNIKGFMVQTGDPTGTGRGGN- 70
Query: 176 SIYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDG 234
           SI+G  FEDE S  LKH   GV+SMAN GPNTNGSQFFI   K P LD ++ VFG VIDG
Sbjct: 71  SIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDG 130
Query: 235 MDVVRKLESVETSRTDY 251
           ++ + +LE +  +   Y
Sbjct: 131 LETLDELEKLPVNEKTY 147

>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B Length = 197

Iteration: 1
 Score =  107 bits (266), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 62/145 (42%), Positives = 83/145 (57%), Gaps = 7/145 (4%)
Query: 116 GRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXI 175
           G + + L  D+ PKT ENF  LC    K + Y G  FHR I++F+IQ             
Sbjct: 29  GDLNLELHCDLTPKTCENFIRLC----KKHYYDGTIFHRSIRNFVIQGGDPTGTGTGGE- 83
Query: 176 SIYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDG 234
           S +G  F+DE    L H G G+LSMAN+GPN+N SQFFI      +LD +H +FG V+ G
Sbjct: 84  SYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGG 143
Query: 235 MDVVRKLESVETS-RTDYPKVPCRI 258
            DV+  +E+VE+  +TD PK   RI
Sbjct: 144 FDVLTAMENVESDPKTDRPKEEIRI 168

>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein Length = 196

Iteration: 1
 Score = 98.6 bits (244), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 59/145 (40%), Positives = 77/145 (53%), Gaps = 6/145 (4%)
Query: 116 GRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXI 175
           G   + L+    PKT  NF  LC   E G+ Y    FHR+I +F+IQ             
Sbjct: 48  GDFEVELYWYHSPKTCLNFYTLC---EMGF-YDNTIFHRVIPNFVIQGGDPTGTGKGGK- 102
Query: 176 SIYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDG 234
           SIYG  FEDE +  LKH G G+LSM+N GPNTN SQFFI     P LD +H +F  V   
Sbjct: 103 SIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKN 162
Query: 235 MDVVRKLESVETSRTDYPKVPCRII 259
           M  +  + SV+T+ T+ P    +I+
Sbjct: 163 MTCIENIASVQTTATNKPIFDLKIL 187

>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A, Ppia, Rv0009, From Mycobacterium Tuberculosis. Length = 191

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/156 (38%), Positives = 72/156 (46%), Gaps = 16/156 (10%)
Query: 116 GRIVMGLFGDVVPKTAENFRALC-----------TAGEKGYGYKGCSFHRIIKDFMIQXX 164
           G I + LFG+  PKT  NF  L            + G  G  Y G  FHR+I+ FMIQ  
Sbjct: 33  GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGG 92
Query: 165 XXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNR 224
                        +   F  E   L+   P +L+MANAGP TNGSQFFI   KTP L+ R
Sbjct: 93  DPTGTGRGGPGYKFADEFHPE---LQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRR 149
Query: 225 HVVFGHVIDG--MDVVRKLESVETSRTDYPKVPCRI 258
           H +FG VID     VV  +    T   D P  P  I
Sbjct: 150 HTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVI 185

>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660 Length = 185

Iteration: 1
 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/142 (38%), Positives = 75/142 (52%), Gaps = 10/142 (7%)
Query: 116 GRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXI 175
           G +   LF    PK  +NF AL  +G     YK   FH+ IK F+IQ             
Sbjct: 26  GDLKFELFCSQCPKACKNFLALSASGY----YKNTIFHKNIKGFIIQGGDPTGTGKGGE- 80
Query: 176 SIYGSSFEDESF-VLKHVGPGVLSMANAG----PNTNGSQFFICTVKTPWLDNRHVVFGH 230
           SIYG  F+DE +  LK+   G+LSMA+ G    PNTNGSQFFI     P L+  +V+FG 
Sbjct: 81  SIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIFGK 140
Query: 231 VIDGMDVVRKLESVETSRTDYP 252
           +IDG + +  LE+  + ++  P
Sbjct: 141 LIDGFETLNTLENCPSDKSHKP 162

>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl Cis-Trans Isomerase, 541.M00136 Length = 201

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/143 (34%), Positives = 71/143 (49%), Gaps = 16/143 (11%)
Query: 116 GRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXI 175
           G + + L  D+ P+  ++F  LC        +    FHR I++FMIQ             
Sbjct: 16  GSLNIELHADMAPRACDSFLRLCAVKY----FDDTIFHRCIRNFMIQGGRAELRQPSKKK 71
Query: 176 SIY-----------GSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDN 223
            +            G+ FEDE    L H G GVLSMAN G ++N S+FFI       L+N
Sbjct: 72  EVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNN 131
Query: 224 RHVVFGHVIDGMDVVRKLESVET 246
           +H +FG V+ G+DV+R+ E +ET
Sbjct: 132 KHTIFGRVVGGLDVLRQWEKLET 154

>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The Serologically Defined Colon Cancer Antigen 10 From Homo Sapiens Length = 185

Iteration: 1
 Score = 70.9 bits (172), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 73/146 (50%), Gaps = 7/146 (4%)
Query: 115 AGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXX 174
           AG I + L+    PK   NF  LC    + Y Y    FHR++  F++Q            
Sbjct: 33  AGDIDIELWSKEAPKACRNFIQLCL---EAY-YDNTIFHRVVPGFIVQGGDPTGTGSGGE 88
Query: 175 ISIYGSSFEDESFV-LKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVI- 232
            SIYG+ F+DE    L+    G+++MANAG + NGSQFF    +   L+N+H +FG V  
Sbjct: 89  -SIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVTG 147
Query: 233 DGMDVVRKLESVETSRTDYPKVPCRI 258
           D +  + +L  V+    + P  P +I
Sbjct: 148 DTVYNMLRLSEVDIDDDERPHNPHKI 173

>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme From Azotobacter Vinelandii With Sucafpfpna Peptide Length = 163

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 71/175 (40%), Gaps = 47/175 (26%)
Query: 116 GRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXI 175
           G I + LF D  P+TA NF      G     Y G  FHR+I  FMIQ             
Sbjct: 9   GTITLKLFADKAPETAANFEQYVKDGH----YDGTIFHRVIDGFMIQ------------- 51
Query: 176 SIYGSSFEDESFVLKHVGPGVLSMANAG---------------PNTNGSQFFICTVKTPW 220
              G  FE      K     + + AN G               P++  +QFFI      +
Sbjct: 52  ---GGGFE-PGMKQKSTRAPIKNEANNGLSNKKYTIAMARTPDPHSASAQFFINVKDNAF 107
Query: 221 LDNR--------HVVFGHVIDGMDVVRKLESVET-SRTDYPKVPCR--IINSGEL 264
           LD+         + VFG V++G DVV +++SV T SR  +  VP    II   E+
Sbjct: 108 LDHTAPTAHGWGYAVFGEVVEGTDVVDRIKSVATGSRAGHGDVPVDDVIIEKAEI 162

>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli Length = 164

Iteration: 1
 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 66/151 (43%), Gaps = 20/151 (13%)
Query: 116 GRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXI 175
           G IV+  F D  P+T +NF   C  G     Y    FHR+I  FMIQ             
Sbjct: 9   GDIVIKTFDDKAPETVKNFLDYCREG----FYNNTIFHRVINGFMIQGGGFEPGMKQKAT 64
Query: 176 SIYGSSFEDESFVLKHVGPGVLSMANA-GPNTNGSQFFICTVKTPWLDNR--------HV 226
                  ++E+        G L+MA    P++  +QFFI  V   +L+          + 
Sbjct: 65  K---EPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYC 121
Query: 227 VFGHVIDGMDVVRKLESVETSRT----DYPK 253
           VF  V+DGMDVV K++ V T R+    D PK
Sbjct: 122 VFAEVVDGMDVVDKIKGVATGRSGMHQDVPK 152

>pdb|1LOP|A Chain A, Cyclophilin A Complexed With Succinyl-Ala-Pro-Ala-P-Nitroanilide Length = 164

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 65/151 (43%), Gaps = 20/151 (13%)
Query: 116 GRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXI 175
           G IV+  F D  P+T +NF   C  G     Y    FHR+I  FMIQ             
Sbjct: 9   GDIVIKTFDDKAPETVKNFLDYCREG----FYNNTIFHRVINGFMIQGGGFEPGMKQKAT 64
Query: 176 SIYGSSFEDESFVLKHVGPGVLSMANA-GPNTNGSQFFICTVKTPWLDNR--------HV 226
                  ++E+        G L+MA    P++  +QFFI  V   +L+          + 
Sbjct: 65  K---EPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYC 121
Query: 227 VFGHVIDGMDVVRKLESVETSRT----DYPK 253
           VF  V+DGMD V K++ V T R+    D PK
Sbjct: 122 VFAEVVDGMDEVDKIKGVATGRSGMHQDVPK 152

>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin, 49.m03261 Length = 232

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 68/157 (43%), Gaps = 21/157 (13%)
Query: 116 GRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXI 175
           G + + L+    P    NF  LC    +GY Y    FHR++KDF++Q             
Sbjct: 31  GDLDVELWARECPLACRNFVQLCL---EGY-YVNTIFHRVVKDFIVQGGDPTGTGRGGAD 86
Query: 176 SIY-GSSFEDESF-VLKHVGPGVLSMANAGPN--------------TNGSQFFICTVKTP 219
           + + G  F+ E+   LK    G++ +AN G +              TNG+QFFI   +  
Sbjct: 87  TTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLARAD 146
Query: 220 WLDNRHVVFGHVI-DGMDVVRKLESVETSRTDYPKVP 255
            L+N + +FG V    +  + K   +E  + D P  P
Sbjct: 147 VLNNAYTLFGKVTGHTLYNLMKFNDLEVGKEDRPMTP 183

>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli Periplasmic Cyclophilin Length = 166

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 68/175 (38%), Gaps = 45/175 (25%)
Query: 115 AGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXX 174
           AG I + L     P + +NF     +G     Y   +FHR+I  FMIQ            
Sbjct: 13  AGNIELELDKQKAPVSVQNFVDYVNSGF----YNNTTFHRVIPGFMIQ------------ 56
Query: 175 ISIYGSSFEDESFVLKHVGPGVLSMANAG-PNTNG--------------SQFFICTVKTP 219
               G  F  E    K   P + + A+ G  NT G              SQFFI      
Sbjct: 57  ----GGGFT-EQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNA 111
Query: 220 WLDNR-----HVVFGHVIDGMDVVRKLESVETSRT----DYPKVPCRIINSGELP 265
           +LD+      + VFG V+ GMDV  K+  V T       + P  P  I+++  LP
Sbjct: 112 FLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSAKVLP 166

>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Length = 166

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 68/175 (38%), Gaps = 45/175 (25%)
Query: 115 AGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXX 174
           AG I + L     P + +NF     +G     Y   +FHR+I  FMIQ            
Sbjct: 13  AGNIELELDKQKAPVSVQNFVDYVNSGF----YNNTTFHRVIPGFMIQ------------ 56
Query: 175 ISIYGSSFEDESFVLKHVGPGVLSMANAG-PNTNG--------------SQFFICTVKTP 219
               G  F  E    K   P + + A+ G  NT G              SQFFI      
Sbjct: 57  ----GGGFT-EQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNA 111
Query: 220 WLDNR-----HVVFGHVIDGMDVVRKLESVETSRT----DYPKVPCRIINSGELP 265
           +LD+      + VFG V+ GMDV  K+  V T       + P  P  I+++  LP
Sbjct: 112 FLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSATVLP 166

>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Length = 167

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 57/142 (40%), Gaps = 44/142 (30%)
Query: 128 PKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESF 187
           PKT ENF      G     Y G  FHR+I  FMIQ                G  FE    
Sbjct: 25  PKTVENFLNYVKKGH----YDGTIFHRVINGFMIQ----------------GGGFE-PGL 63
Query: 188 VLKHVGPGVLSMANAG---------------PNTNGSQFFICTVKTPWLDNR-------- 224
             K     + + AN G               P++  +QFFI      +L++         
Sbjct: 64  KQKPTDAPIANEANNGLKNDTYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGWG 123
Query: 225 HVVFGHVIDGMDVVRKLESVET 246
           + VFG V++G D+V K+++V+T
Sbjct: 124 YAVFGKVVEGQDIVDKIKAVKT 145

>pdb|2OSE|A Chain A, Crystal Structure Of The Mimivirus Cyclophilin Length = 234

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 68/176 (38%), Gaps = 39/176 (22%)
Query: 103 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTA----------GEKGYG------ 146
           +V+ D+ +  +  GR+ + LF D  P   ENF  L             G+  Y       
Sbjct: 16  RVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRT 75
Query: 147 YKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSS-----FEDESFVLKHVGPGVLSMAN 201
           Y+GC FH ++ +  I              ++Y        F D  +   H   G+LS+  
Sbjct: 76  YEGCKFHNVLHNNYIVSGDIYNSNGSSAGTVYCDEPIPPVFGD--YFYPHESKGLLSLV- 132
Query: 202 AGPNTN--GSQFFICTVKTPW-----------LDNRHVVFGHVIDGMDVVRKLESV 244
             P T+  G++++  T                LD   VV G V  G+DV+ K+ S+
Sbjct: 133 --PYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSM 186

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	268
2he9_A	192	NK-tumor recognition protein; cyclosporin, isomera	1e-124
3ich_A	188	Peptidyl-prolyl CIS-trans isomerase B; beta sandwi	1e-124
1a58_A	177	Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala	1e-123
1mzw_A	177	Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc	1e-122
2haq_A	172	Cyclophilin; rotamase, proline, isomerase, CIS-tra	1e-121
2wfi_A	179	Peptidyl-prolyl CIS-trans isomerase G; phosphoprot	1e-121
2cmt_A	172	Peptidyl-prolyl CIS-trans isomerase E; rotamase ac	1e-119
3k2c_A	193	Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH,	1e-119
3rdd_A	184	Peptidyl-prolyl CIS-trans isomerase A; beta barrel	1e-119
2r99_A	173	Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i	1e-118
1qng_A	170	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	1e-117
2igv_A	173	Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1	1e-117
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	1e-117
2z6w_A	165	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	1e-116
3pmp_A	164	Cyclophilin A; peptidyl prolyl isomerase, isomeras	1e-116
2poy_A	186	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	1e-116
1z81_A	229	Cyclophilin; structural genomics, structural genom	1e-116
2c3b_A	172	Ppiase, cyclophilin; isomerase, 3D domain swapping	1e-113
2ose_A	234	Probable peptidyl-prolyl CIS-trans isomerase; cycl	1e-110
2fu0_A	160	Cyclophilin, putative; PFE0505W, cyclosporin-bindi	2e-84
2k7n_A	203	Peptidyl-prolyl CIS-trans isomerase-like 1; beta b	3e-84
2a2n_A	176	Peptidylprolyl isomerase domain and WD repeat CON;	1e-83
2x7k_A	166	Peptidyl-prolyl CIS-trans isomerase-like 1; isomer	2e-83
2b71_A	196	Cyclophilin-like protein; structural genomics, str	1e-80
3bo7_A	201	Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;	5e-76
2poe_A	185	Cyclophilin-like protein, putative; cryptosporidiu	4e-75
2ok3_A	161	Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b	3e-73
1zkc_A	197	Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr	1e-71
2hq6_A	185	Serologically defined colon cancer antigen 10; pro	5e-71
1w74_A	191	Peptidyl-prolyl CIS-trans isomerase A; cyclophilin	2e-64
3bkp_A	232	Cyclophilin; malaria, isomerase, structural GENO s	2e-64
3s6m_A	167	Peptidyl-prolyl CIS-trans isomerase; seattle struc	9e-47
1lop_A	164	Cyclophilin A; rotamase, isomerase-isomerase inhib	1e-46
1v9t_A	166	Cyclophilin B; beta barrel, isomerase-isomerase in	1e-44
3rfy_A	369	Peptidyl-prolyl CIS-trans isomerase CYP38, chloro;	8e-39

>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens} Length = 192

 Score =  349 bits (899), Expect = e-124
 Identities = 88/180 (48%), Positives = 118/180 (65%), Gaps = 9/180 (5%)

Query: 95  ELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYG-------- 146
            L  + + +  FD++I  +P GRI+  LF D+ PKT +NF  LC+ GEKG G        
Sbjct: 13  GLVPRGSPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCS-GEKGLGKTTGKKLC 71

Query: 147 YKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNT 206
           YKG +FHR++K+FMIQGGDF+EG+G GG SIYG  F+DE+F+LKH    +LSMAN G +T
Sbjct: 72  YKGSTFHRVVKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHT 131

Query: 207 NGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPL 266
           NGSQFFI T   P LD  HVVFG VI G +V+ ++E+++T     P    R+I+ G L  
Sbjct: 132 NGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGVLAT 191

>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A* Length = 188

 Score =  349 bits (899), Expect = e-124
 Identities = 106/177 (59%), Positives = 131/177 (74%), Gaps = 1/177 (0%)

Query: 91  AKDVELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGC 150
           + + +   KVT KV+FD+ IG +  GR++ GLFG  VPKT +NF AL T GEKG+GYK  
Sbjct: 5   SDEKKKGPKVTVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALAT-GEKGFGYKNS 63

Query: 151 SFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQ 210
            FHR+IKDFMIQGGDFT GDGTGG SIYG  F DE+F LKH GPG +SMANAG +TNGSQ
Sbjct: 64  KFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQ 123

Query: 211 FFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLD 267
           FFI TVKT WLD +HVVFG V++GM+VVRK+ES +T   D P     I + G++ ++
Sbjct: 124 FFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKIEVE 180

>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A* Length = 177

 Score =  347 bits (892), Expect = e-123
 Identities = 98/177 (55%), Positives = 119/177 (67%), Gaps = 9/177 (5%)

Query: 96  LQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYG--------Y 147
           +  K   +VF DV I G  AGRIVM L+ D+ P+T  NF  LCT G  G G        Y
Sbjct: 1   MSKKDRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCT-GMAGTGKISGKPLHY 59

Query: 148 KGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTN 207
           KG +FHR+IK+FMIQGGDFT+GDGTGG SIYG  F+DE FV+KH  P V+SMAN GPNTN
Sbjct: 60  KGSTFHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTN 119

Query: 208 GSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
           GSQFFI T   P L+N HVVFG V+ G +VV K+E ++T+  + P     I+N GEL
Sbjct: 120 GSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGEL 176

>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A Length = 177

 Score =  344 bits (885), Expect = e-122
 Identities = 101/176 (57%), Positives = 121/176 (68%), Gaps = 6/176 (3%)

Query: 94  VELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGE-----KGYGYK 148
           V   + V   VFFDV IGG+  GR+ + LF DVVPKTAENFR  CT GE        GYK
Sbjct: 3   VANSSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCT-GEFRKDGVPIGYK 61

Query: 149 GCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNG 208
           G +FHR+IKDFMIQGGDF  GDGTG  SIY   F DE+F L+H  PG+LSMAN+GP+TNG
Sbjct: 62  GSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNG 121

Query: 209 SQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
            QFFI   K  WLD +HVVFG +IDG+ V+RK+E+V T   + PK+P  I   GE+
Sbjct: 122 CQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177

>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A Length = 172

 Score =  341 bits (878), Expect = e-121
 Identities = 105/170 (61%), Positives = 123/170 (72%), Gaps = 2/170 (1%)

Query: 95  ELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHR 154
             + +VT KV+FDV I  +P GRI +GLFG   P T ENFR LCT GE G+GYK   FHR
Sbjct: 5   HHEPEVTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCT-GEHGFGYKDSIFHR 63

Query: 155 IIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFIC 214
           +I++FMIQGGDFT  DGTGG SIYG  F DE+  +KH   G LSMANAGPNTNGSQFFI 
Sbjct: 64  VIQNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKH-FVGALSMANAGPNTNGSQFFIT 122

Query: 215 TVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
           T  TPWLD RHVVFG V+DGMDVV ++E  +T+  D P  P +I+ SGEL
Sbjct: 123 TAPTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172

>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A Length = 179

 Score =  341 bits (877), Expect = e-121
 Identities = 98/170 (57%), Positives = 117/170 (68%), Gaps = 9/170 (5%)

Query: 103 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYG--------YKGCSFHR 154
           + FFD+ I  +PAGR+V  LF DV PKT ENFR LCT GEKG G        YK C FHR
Sbjct: 11  RCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCT-GEKGTGKSTQKPLHYKSCLFHR 69

Query: 155 IIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFIC 214
           ++KDFM+QGGDF+EG+G GG SIYG  FEDESF +KH    +LSMAN G +TNGSQFFI 
Sbjct: 70  VVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFIT 129

Query: 215 TVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
           T  TP LD  HVVFG VI G +VVR++E+ +T     P    RI++ GEL
Sbjct: 130 TKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179

>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A Length = 172

 Score =  337 bits (868), Expect = e-119
 Identities = 106/170 (62%), Positives = 127/170 (74%), Gaps = 2/170 (1%)

Query: 95  ELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHR 154
           + Q +   +VFFD+ IG   AGRIVM L  D+VP+TAENFRALCT GE+G+GY  C FHR
Sbjct: 4   KKQKRNLPRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCT-GERGFGYHNCCFHR 62

Query: 155 IIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFIC 214
           +I  FM QGGDF +GDGTGG SIYG  F+DE+F L+H G GVLSMAN+GPNTNGSQFFIC
Sbjct: 63  VIPQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFIC 122

Query: 215 TVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
           T K  WLD +HVVFG V+DG +VV+K+ESV  S++   K P  I   GEL
Sbjct: 123 TTKCDWLDGKHVVFGRVVDGQNVVKKMESVG-SKSGKVKEPVIISRCGEL 171

>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi} Length = 193

 Score =  338 bits (870), Expect = e-119
 Identities = 90/174 (51%), Positives = 111/174 (63%), Gaps = 2/174 (1%)

Query: 95  ELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHR 154
            +  + +  V+FDV    +  GRIVM L  D+VPKTA+NFR LC    KG GYKG +FHR
Sbjct: 21  SMAKEASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCE-RPKGEGYKGSTFHR 79

Query: 155 IIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFIC 214
           II  FM+QGGD+T  +GTGG SIYG  F DE+F LKH   G+LSMAN G +TNGSQFFI 
Sbjct: 80  IIPGFMVQGGDYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQFFIT 139

Query: 215 TVKTPWLDNRHVVFGHVIDGMDVVRKLESVET-SRTDYPKVPCRIINSGELPLD 267
             KT WLD +HVVFG V++GMDVV K+    + S          I + G L  +
Sbjct: 140 LGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSESGQVKKGYRIEIRDCGVLGSN 193

>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens} Length = 184

 Score =  337 bits (867), Expect = e-119
 Identities = 105/176 (59%), Positives = 124/176 (70%), Gaps = 2/176 (1%)

Query: 89  SMAKDVELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYK 148
           S  +++  Q  V   VFFD+ + G+P GR+   LF D VPKTAENFRAL T GEKG+GYK
Sbjct: 10  SGRENLYFQGMVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALST-GEKGFGYK 68

Query: 149 GCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNG 208
           G  FHRII  FM QGGDFT  +GTGG SIYG  FEDE+F+LKH GPG+LSMANAGPNTNG
Sbjct: 69  GSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNG 128

Query: 209 SQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
           SQFFICT KT WLD +HVVFG V +GM++V  +E    SR         I + G+L
Sbjct: 129 SQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFG-SRNGKTSKKITIADCGQL 183

>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A Length = 173

 Score =  335 bits (862), Expect = e-118
 Identities = 101/174 (58%), Positives = 125/174 (71%), Gaps = 2/174 (1%)

Query: 91  AKDVELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGC 150
              +  +A+   +V+ D+ IG KPAGRI M L  DVVP TAENFR LCT  EKG+G+KG 
Sbjct: 1   GSPIAKKARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCT-HEKGFGFKGS 59

Query: 151 SFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQ 210
           SFHRII  FM QGGDFT  +GTGG SIYG  F+DE+F+LKH GPG+LSMAN+GPNTNGSQ
Sbjct: 60  SFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQ 119

Query: 211 FFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
           FF+   KT WLD +HVVFG V +G+DV+R++E+   S+   PK    I + GE 
Sbjct: 120 FFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQG-SKDGKPKQKVIIADCGEY 172

>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A* Length = 170

 Score =  332 bits (855), Expect = e-117
 Identities = 97/169 (57%), Positives = 116/169 (68%), Gaps = 8/169 (4%)

Query: 102 TKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEK------GYGYKGCSFHRI 155
           +KVFFD+ I    AGRI+  LF D+ P+T ENFRALCT GEK         YK   FHRI
Sbjct: 4   SKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCT-GEKIGSRGKNLHYKNSIFHRI 62

Query: 156 IKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICT 215
           I  FM QGGD T G+G+GG SIYG SF DE+F +KH  PG+LSMANAGPNTN SQFFI  
Sbjct: 63  IPQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITL 122

Query: 216 VKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
           V  PWLD +HVVFG VI+GM+VVR++E    +++ Y K    I + GEL
Sbjct: 123 VPCPWLDGKHVVFGKVIEGMNVVREMEKEG-AKSGYVKRSVVITDCGEL 170

>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A Length = 173

 Score =  332 bits (855), Expect = e-117
 Identities = 110/173 (63%), Positives = 129/173 (74%), Gaps = 9/173 (5%)

Query: 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYG-------YKGCSF 152
             +KVFFD+ IGGK +GRIVM L+ DVVPKTA NFRALCT GE G G       +KG  F
Sbjct: 2   SRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCT-GENGIGKSGKPLHFKGSKF 60

Query: 153 HRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFF 212
           HRII +FMIQGGDFT G+GTGG SIYG  F DE+F  KH GPGVLSMANAGPNTNGSQFF
Sbjct: 61  HRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFF 120

Query: 213 ICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELP 265
           +CTVKT WLD +HVVFG V++G+DVV+ +ES   S++  P   C I + G+L 
Sbjct: 121 LCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNG-SQSGKPVKDCMIADCGQLK 172

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score =  339 bits (870), Expect = e-117
 Identities = 109/185 (58%), Positives = 125/185 (67%), Gaps = 10/185 (5%)

Query: 91  AKDVELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYG---- 146
           +   +       +VFFDVDIGG+  GRIV+ LF D+VPKTAENFRALCT GEKG G    
Sbjct: 5   SPQAKPSNPSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCT-GEKGIGPTTG 63

Query: 147 ----YKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANA 202
               +KGC FHRIIK FMIQGGDF+  +GTGG SIYG  FEDE+F  KH   G+LSMANA
Sbjct: 64  KPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANA 123

Query: 203 GPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSG 262
           G NTNGSQFFI TV TP LD +HVVFG VI GM V + LE+VE  + + P   C I   G
Sbjct: 124 GSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEV-KGEKPAKLCVIAECG 182

Query: 263 ELPLD 267
           EL   
Sbjct: 183 ELKEG 187

>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ... Length = 165

 Score =  330 bits (848), Expect = e-116
 Identities = 110/162 (67%), Positives = 127/162 (78%), Gaps = 2/162 (1%)

Query: 103 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQ 162
            V+ DVD  GKP GR+V+ L  DVVPKTAENFRALCT GEKG+GYKG +FHR+I  FM Q
Sbjct: 5   LVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCT-GEKGFGYKGSTFHRVIPSFMCQ 63

Query: 163 GGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLD 222
            GDFT  +GTGG SIYGS F DE+F LKHVGPGVLSMANAGPNTNGSQFFICT+KT WLD
Sbjct: 64  AGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLD 123

Query: 223 NRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
            +HVVFGHVI+GMDVV+K+ES   S++        I + G+L
Sbjct: 124 GKHVVFGHVIEGMDVVKKIESFG-SKSGRTSKKIVITDCGQL 164

>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} PDB: 3o7t_A Length = 164

 Score =  329 bits (847), Expect = e-116
 Identities = 92/162 (56%), Positives = 114/162 (70%), Gaps = 2/162 (1%)

Query: 103 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQ 162
            VFF++ I  KP GRIV  L+ + VPKTA+NFR L T G+ G+GYK   FHR+I  FM+Q
Sbjct: 4   NVFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELAT-GQHGFGYKDSIFHRVIPQFMLQ 62

Query: 163 GGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLD 222
           GGDFT  +GTGG SIYG  F DE+F +KH  PG+LSMANAG NTNGSQFFI TV T WLD
Sbjct: 63  GGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLD 122

Query: 223 NRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
            +HVVFG VI+G+D+VRK+E    S +       +I + G +
Sbjct: 123 GKHVVFGEVIEGLDIVRKVEGKG-SASGKTNATIKITDCGTV 163

>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A* Length = 186

 Score =  330 bits (849), Expect = e-116
 Identities = 105/175 (60%), Positives = 117/175 (66%), Gaps = 9/175 (5%)

Query: 95  ELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYG-------Y 147
            L  +    V+FD+ IG  PAGRI M LF D VP TAENFRALCT GEKG G       Y
Sbjct: 13  NLYFQGNPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCT-GEKGMGQSGKPLCY 71

Query: 148 KGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTN 207
            G  FHRII  FMIQGGDFT GDGTGG SIYGS F DE+FV  H  P +LSMANAGPNTN
Sbjct: 72  TGSFFHRIIPQFMIQGGDFTRGDGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTN 131

Query: 208 GSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSG 262
           GSQFFI TV  PWLD +HVVFG V++GM+VV+ +E    S+   P     I  SG
Sbjct: 132 GSQFFITTVPCPWLDGKHVVFGKVLEGMEVVKSIEKCG-SQNGKPTKSVCITASG 185

>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1 Length = 229

 Score =  332 bits (852), Expect = e-116
 Identities = 84/178 (47%), Positives = 113/178 (63%), Gaps = 9/178 (5%)

Query: 95  ELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGY-----GYKG 149
            L       VF D+++G    G+    LF ++VPKT+ENFR  CT GE        GYK 
Sbjct: 53  LLTNPSNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCT-GEYKVNNLPVGYKN 111

Query: 150 CSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGS 209
             FHR+IK+FMIQGGDF   +G+G +SIYG  F+DE+F +KH   G+LSMAN+GPNTNG 
Sbjct: 112 TIFHRVIKEFMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGC 171

Query: 210 QFFICTVKTPWLDNRHVVFGHVI--DGMDVVRKLESVET-SRTDYPKVPCRIINSGEL 264
           QFFI T K  WLD ++VVFG +I  D + +++K+E+V        PK+P  ++  GEL
Sbjct: 172 QFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGEL 229

>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1 Length = 172

 Score =  321 bits (824), Expect = e-113
 Identities = 92/171 (53%), Positives = 111/171 (64%), Gaps = 9/171 (5%)

Query: 102 TKVFFDV-----DIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRII 156
           ++VFFDV            GRIV  LF   VPKTA+NFR LC     G GY+  +FHRII
Sbjct: 3   SQVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCK-RPAGEGYRESTFHRII 61

Query: 157 KDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTV 216
            +FMIQGGDFT G+GTGG SIYG  F DE+F  KH   G+LSMANAGPNTNGSQFFI T 
Sbjct: 62  PNFMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTA 121

Query: 217 KTPWLDNRHVVFGHVID--GMDVVRKLESVET-SRTDYPKVPCRIINSGEL 264
            T WLD +HVVFG V D     VV+++E++ + S +       +I+N GEL
Sbjct: 122 VTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGEL 172

>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus} Length = 234

 Score =  317 bits (814), Expect = e-110
 Identities = 44/202 (21%), Positives = 71/202 (35%), Gaps = 31/202 (15%)

Query: 97  QAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKG------------ 144
            +    +V+ D+ +  +  GR+ + LF D  P   ENF  L   G+              
Sbjct: 10  NSGKNPRVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTN-GKTYRVNSNGTGKYKY 68

Query: 145 -----YGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFED---ESFVLKHVGPGV 196
                  Y+GC FH ++ +  I  GD    +G+   ++Y           +   H   G+
Sbjct: 69  NRHINRTYEGCKFHNVLHNNYIVSGDIYNSNGSSAGTVYCDEPIPPVFGDYFYPHESKGL 128

Query: 197 LSMA----NAGPNTNGSQFFIC------TVKTPWLDNRHVVFGHVIDGMDVVRKLESVET 246
           LS+      +G     S F I       +     LD   VV G V  G+DV+ K+ S+  
Sbjct: 129 LSLVPYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSMIK 188

Query: 247 SRTDYPKVPCRIINSGELPLDA 268
                      I   G     +
Sbjct: 189 PYAGRKYPTFSIGKCGAYLDSS 210

>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1 Length = 160

 Score =  248 bits (636), Expect = 2e-84
 Identities = 74/146 (50%), Positives = 89/146 (60%), Gaps = 6/146 (4%)

Query: 116 GRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGI 175
           G I + LF     KT +NF         GY Y  C FHR+IK FM+Q GD + GDGTGG 
Sbjct: 15  GDIHISLFYKECKKTVQNFSVHSI---NGY-YNNCIFHRVIKHFMVQTGDPS-GDGTGGE 69

Query: 176 SIYGSSFEDESF-VLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDG 234
           SI+G+ FEDE F  L H  P ++SMAN GPNTNGSQFFI TV  PWLD +H VFG V  G
Sbjct: 70  SIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQG 129

Query: 235 MDVVRKLESVETSRTDYPKVPCRIIN 260
             +V  +E V T + D P    +I+N
Sbjct: 130 SKIVLDIEKVRTDKRDKPLEDIKILN 155

>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens} Length = 203

 Score =  249 bits (639), Expect = 3e-84
 Identities = 77/169 (45%), Positives = 98/169 (57%), Gaps = 11/169 (6%)

Query: 97  QAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRII 156
            +     V+ +  +G      IV+ L+    PKT +NF  L     +GY Y G  FHRII
Sbjct: 7   DSWQPPNVYLETSMG-----IIVLELYWKHAPKTCKNFAELA---RRGY-YNGTKFHRII 57

Query: 157 KDFMIQGGDFTEGDGTGGISIYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICT 215
           KDFMIQGGD T G G GG SIYG  FEDE    LK  G G+L+MANAGP+TNGSQFF+  
Sbjct: 58  KDFMIQGGDPT-GTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTL 116

Query: 216 VKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
             T WLD +H +FG V  G+ +V ++  VET+  D P    +II +   
Sbjct: 117 APTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKAYPS 165

>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 176

 Score =  247 bits (633), Expect = 1e-83
 Identities = 83/162 (51%), Positives = 94/162 (58%), Gaps = 7/162 (4%)

Query: 101 TTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFM 160
             K   D  I     G I   LF    PKT ENF         GY Y G +FHRIIK FM
Sbjct: 16  GPKRVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHS---RNGY-YNGHTFHRIIKGFM 71

Query: 161 IQGGDFTEGDGTGGISIYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 219
           IQ GD T G G GG SI+G  FEDE    L+H  P  LSMANAG NTNGSQFFI  V TP
Sbjct: 72  IQTGDPT-GTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTP 130

Query: 220 WLDNRHVVFGHVIDGMDVVRKLESVET-SRTDYPKVPCRIIN 260
           WLDN+H VFG V  GM+VV+++ +V+   +TD P     IIN
Sbjct: 131 WLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIIN 172

>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A Length = 166

 Score =  245 bits (629), Expect = 2e-83
 Identities = 76/147 (51%), Positives = 93/147 (63%), Gaps = 6/147 (4%)

Query: 116 GRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGI 175
           G IV+ L+    PKT +NF  L     +GY Y G  FHRIIKDFMIQGGD T G G GG 
Sbjct: 21  GIIVLELYWKHAPKTCKNFAELA---RRGY-YNGTKFHRIIKDFMIQGGDPT-GTGRGGA 75

Query: 176 SIYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDG 234
           SIYG  FEDE    LK  G G+L+MANAGP+TNGSQFF+    T WLD +H +FG V  G
Sbjct: 76  SIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQG 135

Query: 235 MDVVRKLESVETSRTDYPKVPCRIINS 261
           + +V ++  VET+  D P    +II +
Sbjct: 136 IGMVNRVGMVETNSQDRPVDDVKIIKA 162

>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1 Length = 196

 Score =  240 bits (614), Expect = 1e-80
 Identities = 67/146 (45%), Positives = 85/146 (58%), Gaps = 6/146 (4%)

Query: 116 GRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGI 175
           G   + L+    PKT  NF  LC   E G+ Y    FHR+I +F+IQGGD T G G GG 
Sbjct: 48  GDFEVELYWYHSPKTCLNFYTLC---EMGF-YDNTIFHRVIPNFVIQGGDPT-GTGKGGK 102

Query: 176 SIYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDG 234
           SIYG  FEDE +  LKH G G+LSM+N GPNTN SQFFI     P LD +H +F  V   
Sbjct: 103 SIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKN 162

Query: 235 MDVVRKLESVETSRTDYPKVPCRIIN 260
           M  +  + SV+T+ T+ P    +I+ 
Sbjct: 163 MTCIENIASVQTTATNKPIFDLKILR 188

>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii} Length = 201

 Score =  228 bits (584), Expect = 5e-76
 Identities = 56/157 (35%), Positives = 80/157 (50%), Gaps = 16/157 (10%)

Query: 116 GRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGD----G 171
           G + + L  D+ P+  ++F  LC      Y +    FHR I++FMIQGG           
Sbjct: 16  GSLNIELHADMAPRACDSFLRLC---AVKY-FDDTIFHRCIRNFMIQGGRAELRQPSKKK 71

Query: 172 TGGISIY-------GSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDN 223
               S         G+ FEDE    L H G GVLSMAN G ++N S+FFI       L+N
Sbjct: 72  EVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNN 131

Query: 224 RHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIIN 260
           +H +FG V+ G+DV+R+ E +ET + D P  P ++  
Sbjct: 132 KHTIFGRVVGGLDVLRQWEKLETDKKDKPLKPPKVEE 168

>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A Length = 185

 Score =  225 bits (576), Expect = 4e-75
 Identities = 66/169 (39%), Positives = 88/169 (52%), Gaps = 10/169 (5%)

Query: 97  QAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRII 156
            +     ++F         G +   LF    PK  +NF AL      GY YK   FH+ I
Sbjct: 7   HSSGRENLYFQGVRIITNYGDLKFELFCSQCPKACKNFLALS---ASGY-YKNTIFHKNI 62

Query: 157 KDFMIQGGDFTEGDGTGGISIYGSSFEDE-SFVLKHVGPGVLSMANAG----PNTNGSQF 211
           K F+IQGGD T G G GG SIYG  F+DE    LK+   G+LSMA+ G    PNTNGSQF
Sbjct: 63  KGFIIQGGDPT-GTGKGGESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQF 121

Query: 212 FICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIIN 260
           FI     P L+  +V+FG +IDG + +  LE+  + ++  P     I +
Sbjct: 122 FITYSSLPQLNGEYVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKD 170

>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A* Length = 161

 Score =  220 bits (563), Expect = 3e-73
 Identities = 75/147 (51%), Positives = 90/147 (61%), Gaps = 7/147 (4%)

Query: 116 GRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGI 175
           G I + +F +  PKT ENF ALC      Y Y GC FHR IK FM+Q GD T G G GG 
Sbjct: 10  GDIKIEVFCERTPKTCENFLALC---ASNY-YNGCIFHRNIKGFMVQTGDPT-GTGRGGN 64

Query: 176 SIYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDG 234
           SI+G  FEDE S  LKH   GV+SMAN GPNTNGSQFFI   K P LD ++ VFG VIDG
Sbjct: 65  SIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDG 124

Query: 235 MDVVRKLESVET-SRTDYPKVPCRIIN 260
           ++ + +LE +    +T  P     I +
Sbjct: 125 LETLDELEKLPVNEKTYRPLNDVHIKD 151

>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 197

 Score =  217 bits (555), Expect = 1e-71
 Identities = 72/147 (48%), Positives = 93/147 (63%), Gaps = 7/147 (4%)

Query: 116 GRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGI 175
           G + + L  D+ PKT ENF  LC   +K Y Y G  FHR I++F+IQGGD T G GTGG 
Sbjct: 29  GDLNLELHCDLTPKTCENFIRLC---KKHY-YDGTIFHRSIRNFVIQGGDPT-GTGTGGE 83

Query: 176 SIYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDG 234
           S +G  F+DE    L H G G+LSMAN+GPN+N SQFFI      +LD +H +FG V+ G
Sbjct: 84  SYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGG 143

Query: 235 MDVVRKLESVET-SRTDYPKVPCRIIN 260
            DV+  +E+VE+  +TD PK   RI  
Sbjct: 144 FDVLTAMENVESDPKTDRPKEEIRIDA 170

>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens} Length = 185

 Score =  215 bits (550), Expect = 5e-71
 Identities = 56/147 (38%), Positives = 82/147 (55%), Gaps = 7/147 (4%)

Query: 116 GRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGI 175
           G I + L+    PK   NF  LC    + Y Y    FHR++  F++QGGD T G G+GG 
Sbjct: 34  GDIDIELWSKEAPKACRNFIQLC---LEAY-YDNTIFHRVVPGFIVQGGDPT-GTGSGGE 88

Query: 176 SIYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVI-D 233
           SIYG+ F+DE    L+    G+++MANAG + NGSQFF    +   L+N+H +FG V  D
Sbjct: 89  SIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVTGD 148

Query: 234 GMDVVRKLESVETSRTDYPKVPCRIIN 260
            +  + +L  V+    + P  P +I +
Sbjct: 149 TVYNMLRLSEVDIDDDERPHNPHKIKS 175

>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1 Length = 191

 Score =  199 bits (507), Expect = 2e-64
 Identities = 68/159 (42%), Positives = 80/159 (50%), Gaps = 18/159 (11%)

Query: 116 GRIVMGLFGDVVPKTAENFRALCTAGEKGYG-----------YKGCSFHRIIKDFMIQGG 164
           G I + LFG+  PKT  NF  L    +               Y G  FHR+I+ FMIQGG
Sbjct: 33  GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGG 92

Query: 165 DFTEGDGTGGISIYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDN 223
           D T G G GG    G  F DE    L+   P +L+MANAGP TNGSQFFI   KTP L+ 
Sbjct: 93  DPT-GTGRGG---PGYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNR 148

Query: 224 RHVVFGHVID--GMDVVRKLESVETSRTDYPKVPCRIIN 260
           RH +FG VID     VV  +    T   D P  P  I +
Sbjct: 149 RHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIES 187

>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 232

 Score =  200 bits (510), Expect = 2e-64
 Identities = 52/164 (31%), Positives = 76/164 (46%), Gaps = 25/164 (15%)

Query: 116 GRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGG- 174
           G + + L+    P    NF  LC    +GY Y    FHR++KDF++QGGD T G G GG 
Sbjct: 31  GDLDVELWARECPLACRNFVQLC---LEGY-YVNTIFHRVVKDFIVQGGDPT-GTGRGGA 85

Query: 175 -ISIYGSSFEDESFV--LKHVGPGVLSMANAGPN--------------TNGSQFFICTVK 217
             +  G  F+ E     LK    G++ +AN G +              TNG+QFFI   +
Sbjct: 86  DTTFDGKPFDVE-THPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLAR 144

Query: 218 TPWLDNRHVVFGHVI-DGMDVVRKLESVETSRTDYPKVPCRIIN 260
              L+N + +FG V    +  + K   +E  + D P  P  I +
Sbjct: 145 ADVLNNAYTLFGKVTGHTLYNLMKFNDLEVGKEDRPMTPPFIKS 188

>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} PDB: 3t1u_A* Length = 167

 Score =  153 bits (388), Expect = 9e-47
 Identities = 48/151 (31%), Positives = 75/151 (49%), Gaps = 19/151 (12%)

Query: 116 GRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGI 175
           G I + L     PKT ENF       +KG+ Y G  FHR+I  FMIQGG F         
Sbjct: 13  GVIKLELDEAKAPKTVENFLNYV---KKGH-YDGTIFHRVINGFMIQGGGFE-PGLKQKP 67

Query: 176 SIYGSSFEDESFV-LKHVGPGVLSMA-NAGPNTNGSQFFICTVKTPWLDNR--------H 225
           +   +   +E+   LK+     ++MA    P++  +QFFI      +L++         +
Sbjct: 68  T--DAPIANEANNGLKND-TYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGWGY 124

Query: 226 VVFGHVIDGMDVVRKLESVET-SRTDYPKVP 255
            VFG V++G D+V K+++V+T S+  +  VP
Sbjct: 125 AVFGKVVEGQDIVDKIKAVKTGSKGFHQDVP 155

>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A Length = 164

 Score =  152 bits (386), Expect = 1e-46
 Identities = 50/151 (33%), Positives = 72/151 (47%), Gaps = 19/151 (12%)

Query: 116 GRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGI 175
           G IV+  F D  P+T +NF   C    +G+ Y    FHR+I  FMIQGG F         
Sbjct: 9   GDIVIKTFDDKAPETVKNFLDYC---REGF-YNNTIFHRVINGFMIQGGGFE-PGMKQKA 63

Query: 176 SIYGSSFEDESFV-LKHVGPGVLSMA-NAGPNTNGSQFFICTVKTPWLDNR--------H 225
           +      ++E+   LK+   G L+MA    P++  +QFFI  V   +L+          +
Sbjct: 64  T--KEPIKNEANNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGY 120

Query: 226 VVFGHVIDGMDVVRKLESVET-SRTDYPKVP 255
            VF  V+DGMD V K++ V T     +  VP
Sbjct: 121 CVFAEVVDGMDEVDKIKGVATGRSGMHQDVP 151

>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A Length = 166

 Score =  147 bits (373), Expect = 1e-44
 Identities = 47/155 (30%), Positives = 69/155 (44%), Gaps = 19/155 (12%)

Query: 116 GRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGI 175
           G I + L     P + +NF         G+ Y   +FHR+I  FMIQGG FT        
Sbjct: 14  GNIELELDKQKAPVSVQNFVDYV---NSGF-YNNTTFHRVIPGFMIQGGGFT-EQMQQKK 68

Query: 176 SIYGSSFEDESFV-LKHVGPGVLSMA-NAGPNTNGSQFFICTVKTPWLDNR-----HVVF 228
                  ++E+   L++   G ++MA  A  ++  SQFFI      +LD+      + VF
Sbjct: 69  P--NPPIKNEADNGLRNT-RGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVF 125

Query: 229 GHVIDGMDVVRKLESVETSRT----DYPKVPCRII 259
           G V+ GMDV  K+  V T       + P  P  I+
Sbjct: 126 GKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVIL 160

>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana} Length = 369

 Score =  138 bits (348), Expect = 8e-39
 Identities = 41/162 (25%), Positives = 59/162 (36%), Gaps = 41/162 (25%)

Query: 116 GRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGI 175
               + L G   P TA NF  L    E+ + Y G    R    F++Q GD  EG   G I
Sbjct: 188 CVFRIVLDGYNAPVTAGNFVDLV---ERHF-YDGMEIQRSD-GFVVQTGD-PEGPAEGFI 241

Query: 176 S---------------------IYGSSFED-----ESFVLKHVGPGVLSMANAG--PNTN 207
                                  YGS+ E+        V+     G ++MA      ++ 
Sbjct: 242 DPSTEKTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMAREEFENDSG 301

Query: 208 GSQFFICTVK-------TPWLDNRHVVFGHVIDGMDVVRKLE 242
            SQ F    +       +  LD R+ VFG+V D  D +  L+
Sbjct: 302 SSQVFWLLKESELTPSNSNILDGRYAVFGYVTDNEDFLADLK 343

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	268
2haq_A	172	Cyclophilin; rotamase, proline, isomerase, CIS-tra	100.0
3ich_A	188	Peptidyl-prolyl CIS-trans isomerase B; beta sandwi	100.0
2cmt_A	172	Peptidyl-prolyl CIS-trans isomerase E; rotamase ac	100.0
2z6w_A	165	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
3pmp_A	164	Cyclophilin A; peptidyl prolyl isomerase, isomeras	100.0
2wfi_A	179	Peptidyl-prolyl CIS-trans isomerase G; phosphoprot	100.0
4fru_A	185	Cyclophilin B, peptidyl-prolyl CIS-trans isomerase	100.0
2he9_A	192	NK-tumor recognition protein; cyclosporin, isomera	100.0
1a58_A	177	Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala	100.0
2r99_A	173	Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i	100.0
2igv_A	173	Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1	100.0
3rdd_A	184	Peptidyl-prolyl CIS-trans isomerase A; beta barrel	100.0
1qng_A	170	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
1mzw_A	177	Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc	100.0
2poy_A	186	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
3k2c_A	193	Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH,	100.0
2c3b_A	172	Ppiase, cyclophilin; isomerase, 3D domain swapping	100.0
1z81_A	229	Cyclophilin; structural genomics, structural genom	100.0
2ose_A	234	Probable peptidyl-prolyl CIS-trans isomerase; cycl	100.0
2poe_A	185	Cyclophilin-like protein, putative; cryptosporidiu	100.0
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	100.0
2ok3_A	161	Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b	100.0
2fu0_A	160	Cyclophilin, putative; PFE0505W, cyclosporin-bindi	100.0
2x7k_A	166	Peptidyl-prolyl CIS-trans isomerase-like 1; isomer	100.0
2b71_A	196	Cyclophilin-like protein; structural genomics, str	100.0
1zkc_A	197	Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr	100.0
2a2n_A	176	Peptidylprolyl isomerase domain and WD repeat CON;	100.0
3bo7_A	201	Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;	100.0
2k7n_A	203	Peptidyl-prolyl CIS-trans isomerase-like 1; beta b	100.0
1w74_A	191	Peptidyl-prolyl CIS-trans isomerase A; cyclophilin	100.0
2hq6_A	185	Serologically defined colon cancer antigen 10; pro	100.0
1v9t_A	166	Cyclophilin B; beta barrel, isomerase-isomerase in	100.0
1lop_A	164	Cyclophilin A; rotamase, isomerase-isomerase inhib	100.0
3bkp_A	232	Cyclophilin; malaria, isomerase, structural GENO s	100.0
3s6m_A	167	Peptidyl-prolyl CIS-trans isomerase; seattle struc	100.0
3rfy_A	369	Peptidyl-prolyl CIS-trans isomerase CYP38, chloro;	100.0
3kop_A	188	Uncharacterized protein; protein with A cyclophili	94.5
2nnz_A	153	Hypothetical protein; beta-barrel, structural geno	90.95

>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A

Probab=100.00  E-value=1.5e-53  Score=364.57  Aligned_cols=167  Identities=63%  Similarity=1.075  Sum_probs=160.6

Q ss_pred             ccccccceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCCCc
Q 024387           96 LQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGI  175 (268)
Q Consensus        96 ~~~~~~~~v~fDi~i~~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~  175 (268)
                      ..|.++++|||||.++++++|+|+||||++.||+||+||++||+ |.++|+|+|+.|||++|+|||||||+..++|+|+.
T Consensus         6 ~~~~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~-g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~   84 (172)
T 2haq_A            6 HEPEVTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCT-GEHGFGYKDSIFHRVIQNFMIQGGDFTNFDGTGGK   84 (172)
T ss_dssp             -CCCCCEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHH-TTTSCCSTTCBCCEEETTTEEEECCTTTSSSSCCC
T ss_pred             CCCCCCCeEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHhc-cCCCcccCCCEEEEEECCCEEecCCccCCCCCCCc
Confidence            35778999999999999999999999999999999999999997 66788999999999999999999998888999999


Q ss_pred             cccCCCCCCCccccccCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCCCCCCCCCC
Q 024387          176 SIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVP  255 (268)
Q Consensus       176 s~~g~~~~de~~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td~~~~P~~~  255 (268)
                      ++||+.|++|++.++|. +|+|+||+.+|++++|||||++.++++||++|+|||+|++|||||++|++++++.+++|.++
T Consensus        85 si~g~~f~dE~~~l~h~-~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~~~~~P~~~  163 (172)
T 2haq_A           85 SIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTAPTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKP  163 (172)
T ss_dssp             CSSSSCBCCCCCCSCCC-TTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSSC
T ss_pred             cccCCcccCcCCCcccC-ceEEEEccCCCCCcccEEEEECCCCCccCCCEeEEEEEeCCHHHHHHHHhCCcCCCCcCCCC
Confidence            99999999999999998 99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEeeeEe
Q 024387          256 CRIINSGEL  264 (268)
Q Consensus       256 I~I~~cGvL  264 (268)
                      |+|.+||+|
T Consensus       164 v~I~~~g~l  172 (172)
T 2haq_A          164 VKIVASGEL  172 (172)
T ss_dssp             EEEEEEEEC
T ss_pred             eEEEEeEEC
Confidence            999999987

>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*

Probab=100.00  E-value=4.5e-53  Score=366.29  Aligned_cols=170  Identities=62%  Similarity=1.065  Sum_probs=163.1

Q ss_pred             ccccccceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCCCc
Q 024387           96 LQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGI  175 (268)
Q Consensus        96 ~~~~~~~~v~fDi~i~~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~  175 (268)
                      ..|.++++|||||.++++++|+|+||||.+.||+||+||++||+ |.+|++|+|+.||||+|+|||||||+..++|+|+.
T Consensus        10 ~~p~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~-g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~   88 (188)
T 3ich_A           10 KGPKVTVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALAT-GEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGK   88 (188)
T ss_dssp             CSCEEEEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHH-TTTSCSSTTCBCCEEETTTEEEECCTTTSSSSCCC
T ss_pred             CCCCcCCeEEEEEEECCEeceeEEEEEcCCCCcHHHHHHHHHhc-ccCCccccCCEEEEEECCCEEEcCCccCCCCCCCc
Confidence            45778999999999999999999999999999999999999998 66788899999999999999999998889999999


Q ss_pred             cccCCCCCCCccccccCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCCCCCCCCCC
Q 024387          176 SIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVP  255 (268)
Q Consensus       176 s~~g~~~~de~~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td~~~~P~~~  255 (268)
                      ++||..|++|++.++|.++|+|+|||.+|++++|||||++.+.+|||++|+|||+|++|||||++|++++++.+++|.++
T Consensus        89 si~g~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~~~~~P~~~  168 (188)
T 3ich_A           89 SIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKD  168 (188)
T ss_dssp             BTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSC
T ss_pred             cccCCcccccccCcccCCCeEEEEccCCCCCcccEEEEECCCCcccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCeECCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEeeeEecC
Q 024387          256 CRIINSGELPL  266 (268)
Q Consensus       256 I~I~~cGvL~~  266 (268)
                      |+|.+||+|+.
T Consensus       169 v~I~~~~~l~~  179 (188)
T 3ich_A          169 VIIADCGKIEV  179 (188)
T ss_dssp             EEEEEEEEEEE
T ss_pred             EEEEEeEEEec
Confidence            99999999953

>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A

Probab=100.00  E-value=1.1e-52  Score=359.16  Aligned_cols=166  Identities=63%  Similarity=1.102  Sum_probs=157.4

Q ss_pred             ccccceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCCCccc
Q 024387           98 AKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISI  177 (268)
Q Consensus        98 ~~~~~~v~fDi~i~~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~  177 (268)
                      +..+++|||||.+++|+.|+|+||||++.||+||+||++||+ +.+|++|+|+.||||+|+|||||||++.++|+|+.++
T Consensus         7 ~~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~-~~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~G~gg~si   85 (172)
T 2cmt_A            7 KRNLPRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCT-GERGFGYHNCCFHRVIPQFMCQGGDFVKGDGTGGKSI   85 (172)
T ss_dssp             --CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHH-TTTSCSSTTCBEEEEETTTEEEECCTTTSSSSCCCBT
T ss_pred             CCCCCEEEEEEEECCeecceEEEEEcCCCCCHHHHHHHHHhc-cCCCceECCCEEEEEECCCEEEcCCccCCCCCCCCcc
Confidence            456899999999999999999999999999999999999999 5568889999999999999999999988899999999


Q ss_pred             cCCCCCCCccccccCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeE
Q 024387          178 YGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCR  257 (268)
Q Consensus       178 ~g~~~~de~~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td~~~~P~~~I~  257 (268)
                      |+..|++|++.++|.++|+|+||+.+|++++|||||++.+.+|||++|+|||+|++|||||++|+++++ .+++|.++|+
T Consensus        86 ~g~~f~dE~~~l~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tvFG~Vv~G~dvv~~I~~~~~-~~~~P~~~v~  164 (172)
T 2cmt_A           86 YGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGS-KSGKVKEPVI  164 (172)
T ss_dssp             TBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHGGGGCC-TTCCCSSCEE
T ss_pred             CCCcccccccCcccCCceEEEEeeCCCCCcccEEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHhCCC-CCCCCCCCEE
Confidence            999999999999999999999999999999999999999999999999999999999999999999987 4689999999


Q ss_pred             EEeeeEec
Q 024387          258 IINSGELP  265 (268)
Q Consensus       258 I~~cGvL~  265 (268)
                      |.+||+|+
T Consensus       165 I~~~g~l~  172 (172)
T 2cmt_A          165 ISRCGELI  172 (172)
T ss_dssp             EEEEEEEC
T ss_pred             EEEeEeEC
Confidence            99999984

>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...

Probab=100.00  E-value=1.4e-52  Score=356.27  Aligned_cols=164  Identities=66%  Similarity=1.130  Sum_probs=157.4

Q ss_pred             ccceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCCCccccC
Q 024387          100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYG  179 (268)
Q Consensus       100 ~~~~v~fDi~i~~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g  179 (268)
                      .+++|||||+++++++|+|+||||++.||+||+||++||+ |.++|+|+|+.|||++|+|||||||++.++|+|+.++|+
T Consensus         2 ~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~-g~~g~~Y~g~~fhRvi~~f~iQgGd~~~~~g~gg~si~g   80 (165)
T 2z6w_A            2 GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCT-GEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYG   80 (165)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHH-TTTSCCSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTB
T ss_pred             CCCEEEEEEEECCEeeeEEEEEEeCCCCcHHHHHHHHHhc-cCCCccCcCCEEEEEECCCEEEeCCccCCCCCCCCcccC
Confidence            3789999999999999999999999999999999999999 777889999999999999999999998889999999999


Q ss_pred             CCCCCCccccccCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEE
Q 024387          180 SSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRII  259 (268)
Q Consensus       180 ~~~~de~~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td~~~~P~~~I~I~  259 (268)
                      ..|++|++.++|.++|+|+||+.+|++++|||||++.+.++||++|+|||+|++|||||++|+++++ .+++|.++|+|.
T Consensus        81 ~~f~dE~~~l~h~~~G~lsmA~~gp~s~~SQFfI~~~~~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~~-~~~~P~~~v~I~  159 (165)
T 2z6w_A           81 SRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGS-KSGRTSKKIVIT  159 (165)
T ss_dssp             SCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCC-TTSCCSSCEEEE
T ss_pred             CcccCcccccccCCCCEEEEeeCCCCCcccEEEEEcCCCcccCCCeeEEEEEEcCHHHHHHHHhCCC-CCCCCCCcEEEE
Confidence            9999999999999999999999999999999999999999999999999999999999999999875 789999999999


Q ss_pred             eeeEec
Q 024387          260 NSGELP  265 (268)
Q Consensus       260 ~cGvL~  265 (268)
                      +||+|.
T Consensus       160 ~~g~l~  165 (165)
T 2z6w_A          160 DCGQLS  165 (165)
T ss_dssp             EEEECC
T ss_pred             EeEEEC
Confidence            999984

>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} SCOP: b.62.1.1 PDB: 3o7t_A

Probab=100.00  E-value=1.6e-52  Score=355.65  Aligned_cols=163  Identities=56%  Similarity=1.014  Sum_probs=156.9

Q ss_pred             cceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCCCccccCC
Q 024387          101 TTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGS  180 (268)
Q Consensus       101 ~~~v~fDi~i~~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~  180 (268)
                      +++|||||.+++|+.|+|+||||++.||+||+||++||+ |.++++|+|+.|||++|+|||||||++.+++.|+.++|+.
T Consensus         2 ~p~vf~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~L~~-g~~g~~Y~g~~fhRvi~~f~iQgGd~~~~~g~gg~si~g~   80 (164)
T 3pmp_A            2 MANVFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELAT-GQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKSIYGE   80 (164)
T ss_dssp             CCCEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHH-TTTSCSSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBS
T ss_pred             CCEEEEEEEECCEEeeEEEEEEeCCCCcHHHHHHHHHhc-ccCCCcccCCEEEEEECCCeEEeCCCCCCCCCCCcccCCc
Confidence            689999999999999999999999999999999999999 6678899999999999999999999888999999999999


Q ss_pred             CCCCCccccccCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEe
Q 024387          181 SFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIIN  260 (268)
Q Consensus       181 ~~~de~~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td~~~~P~~~I~I~~  260 (268)
                      .|++|++.++|.++|+|+|||.+|++++|||||++.+.++||++|+|||+|++|||||++|++++++ +++|.++|+|.+
T Consensus        81 ~~~dE~~~l~h~~~G~lsma~~g~~t~~SQFfIt~~~~~~Ld~~~~vFG~Vv~G~~vv~~I~~~~~~-~~~P~~~v~I~~  159 (164)
T 3pmp_A           81 KFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKVEGKGSA-SGKTNATIKITD  159 (164)
T ss_dssp             CBCCCCCCSCCCSTTEEEECBSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TCCCSSCEEEEE
T ss_pred             cccccccccCcCCCcEEEEeeCCCCCcccEEEEECCCChhhCCCccEEEEEeCCHHHHHHHHhCCCC-CCCcccCEEEEe
Confidence            9999999999999999999999999999999999999999999999999999999999999999886 789999999999


Q ss_pred             eeEec
Q 024387          261 SGELP  265 (268)
Q Consensus       261 cGvL~  265 (268)
                      ||+|.
T Consensus       160 cg~l~  164 (164)
T 3pmp_A          160 CGTVA  164 (164)
T ss_dssp             EEEC-
T ss_pred             CeEEC
Confidence            99984

>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A

Probab=100.00  E-value=1.6e-52  Score=360.37  Aligned_cols=163  Identities=60%  Similarity=1.014  Sum_probs=156.3

Q ss_pred             ccceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHHhcCCCC---------cccCCCEEEEEEcCceeeeCCCcCCC
Q 024387          100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKG---------YGYKGCSFHRIIKDFMIQGGDFTEGD  170 (268)
Q Consensus       100 ~~~~v~fDi~i~~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg---------~gY~g~~f~Rvi~~f~iqgGd~~~~~  170 (268)
                      .+++|||||++++++.|+|+||||++.||+||+||++||+ |.++         + |+|+.||||+|+|||||||++.++
T Consensus         8 ~~~~vf~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~-g~~g~~~~~~~~~~-Y~g~~FhRvi~~f~iQgGd~~~~~   85 (179)
T 2wfi_A            8 QRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCT-GEKGTGKSTQKPLH-YKSCLFHRVVKDFMVQGGDFSEGN   85 (179)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHH-CTTCBCTTTCSBSC-CTTCBEEEEETTTEEEECCTTTSS
T ss_pred             CCCeEEEEEEECCccceEEEEEEcCCCCChHHHHHHHHhc-CCcCcccccccCCe-ECCCEEEEEECCCEEEcccccCCC
Confidence            4889999999999999999999999999999999999998 3332         3 999999999999999999998889


Q ss_pred             CCCCccccCCCCCCCccccccCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCCCCC
Q 024387          171 GTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTD  250 (268)
Q Consensus       171 g~gg~s~~g~~~~de~~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td~~~  250 (268)
                      |+|+.++|+..|++|++.++|.++|+|+|||.+|++++||||||+.+++|||++|+|||+|++|||||++|++++++.++
T Consensus        86 g~gg~si~g~~f~dE~~~~~h~~~G~lsMAn~gp~tngSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~t~~~~  165 (179)
T 2wfi_A           86 GRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAAS  165 (179)
T ss_dssp             SSCCCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTS
T ss_pred             CCCCCcccCCcccccccCcCcCCCeEEEEEeCCCCCcceEEEEEcCCCcccCCCeeEEEEEeCCHHHHHHHHcCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCeEEEeeeEe
Q 024387          251 YPKVPCRIINSGEL  264 (268)
Q Consensus       251 ~P~~~I~I~~cGvL  264 (268)
                      +|.++|+|.+||+|
T Consensus       166 ~P~~~v~I~~~G~l  179 (179)
T 2wfi_A          166 KPFAEVRILSCGEL  179 (179)
T ss_dssp             CBSSCEEEEEEEEC
T ss_pred             CCCCCeEEEeCeeC
Confidence            99999999999987

>4fru_A Cyclophilin B, peptidyl-prolyl CIS-trans isomerase; cyclophilin-type ppiase, peptidyl-prolyl CIS-trans isomerase chaperone, foldase; HET: ME2 PEG; 1.10A {Equus caballus} PDB: 4frv_A* 3ich_A 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*

Probab=100.00  E-value=9.1e-53  Score=363.49  Aligned_cols=169  Identities=63%  Similarity=1.077  Sum_probs=162.2

Q ss_pred             cccccceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCCCcc
Q 024387           97 QAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGIS  176 (268)
Q Consensus        97 ~~~~~~~v~fDi~i~~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s  176 (268)
                      .|.++++|||||+++++++|+|+||||++.||+||+||++||+ +.+|+.|+|+.|||++|+|||||||++.+++.|+.+
T Consensus         8 ~p~~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~-~~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~s   86 (185)
T 4fru_A            8 GPKVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALAT-GEKGFGYKDSKFHRVIKDFMIQGGDFTRGDGTGGKS   86 (185)
T ss_dssp             EEEEEEEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHH-TTTSCCSTTCBCCEEETTTEEEECCTTTSSSSCCCB
T ss_pred             CCCcCcEEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHHh-cCCCCeEcCCEEEEeeCCCeEEECCCCCCCCCCCcc
Confidence            4778999999999999999999999999999999999999999 445645999999999999999999999899999999


Q ss_pred             ccCCCCCCCccccccCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCCCCCCCCCCe
Q 024387          177 IYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPC  256 (268)
Q Consensus       177 ~~g~~~~de~~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td~~~~P~~~I  256 (268)
                      +|+..|++|++.++|.++|+|+|||.+|++++|||||++.+.+|||++|+|||+|++|||||++|++++++.+++|.++|
T Consensus        87 i~g~~f~de~~~~~h~~~G~lsma~~gp~t~~SQFfI~~~~~~~Ld~~~~vFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v  166 (185)
T 4fru_A           87 IYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDV  166 (185)
T ss_dssp             TTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCE
T ss_pred             ccCCccCccccccCcCCCeEEEEeeCCCCCcceEEEEEeCCCcccCCCccEEEEEeCCHHHHHHHHhCCCCCCCcCCCCE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeeEecC
Q 024387          257 RIINSGELPL  266 (268)
Q Consensus       257 ~I~~cGvL~~  266 (268)
                      +|.+||+|++
T Consensus       167 ~I~~~g~l~~  176 (185)
T 4fru_A          167 TIADCGKIEV  176 (185)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEceEEec
Confidence            9999999965

>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.1e-52  Score=363.16  Aligned_cols=169  Identities=51%  Similarity=0.907  Sum_probs=156.9

Q ss_pred             ccccccceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHHhcCCC---------CcccCCCEEEEEEcCceeeeCCC
Q 024387           96 LQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEK---------GYGYKGCSFHRIIKDFMIQGGDF  166 (268)
Q Consensus        96 ~~~~~~~~v~fDi~i~~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~k---------g~gY~g~~f~Rvi~~f~iqgGd~  166 (268)
                      +....+++|||||+++++++|+|+||||++.||+||+||++||+ |.+         ++ |+|+.||||+|+|||||||+
T Consensus        14 ~~~~~~~~vf~di~i~~t~~G~I~ieL~~~~aP~t~~NF~~L~~-g~~g~~~~~~k~~~-Y~g~~FhRVi~~fmiQgGd~   91 (192)
T 2he9_A           14 LVPRGSPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCS-GEKGLGKTTGKKLC-YKGSTFHRVVKNFMIQGGDF   91 (192)
T ss_dssp             -----CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHH-CTTCBCTTTCSBSC-CTTCBEEEEETTTEEEECCT
T ss_pred             ccccCCCeEEEEEEECCEecceEEEEEcCCCCchHHHHHHHHhc-CCCCcccccccCCe-ECCCEEEEEECCCEEEcCcc
Confidence            34567999999999999999999999999999999999999997 333         23 99999999999999999999


Q ss_pred             cCCCCCCCccccCCCCCCCccccccCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCC
Q 024387          167 TEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVET  246 (268)
Q Consensus       167 ~~~~g~gg~s~~g~~~~de~~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~t  246 (268)
                      +.++|+|+.++||..|++|++.++|.++|+|+|||.+|++++||||||+.+++|||++|+|||+|++|||||++|+++++
T Consensus        92 ~~~~G~gg~siyg~~f~dE~~~l~h~~~G~lsMAn~gp~tngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t  171 (192)
T 2he9_A           92 SEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKT  171 (192)
T ss_dssp             TTSSSSCCCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCB
T ss_pred             cCCCCCCCCcccCCcccCccccCCCCCCeEEEEEeCCCCCcceEEEEEcCCCcccCCCccEEEEEEeCHHHHHHHHcCCc
Confidence            88899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCeEEEeeeEecC
Q 024387          247 SRTDYPKVPCRIINSGELPL  266 (268)
Q Consensus       247 d~~~~P~~~I~I~~cGvL~~  266 (268)
                      +++++|.++|+|.+||+|..
T Consensus       172 ~~~~~P~~~v~I~~~g~l~~  191 (192)
T 2he9_A          172 DAASRPYADVRVIDCGVLAT  191 (192)
T ss_dssp             CTTSCBSSCEEEEEEEECC-
T ss_pred             CCCCCCcCCeEEEEeEEEcc
Confidence            99999999999999999863

>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A*

Probab=100.00  E-value=3.9e-52  Score=357.27  Aligned_cols=165  Identities=58%  Similarity=0.972  Sum_probs=156.7

Q ss_pred             ccceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCc--------ccCCCEEEEEEcCceeeeCCCcCCCC
Q 024387          100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGY--------GYKGCSFHRIIKDFMIQGGDFTEGDG  171 (268)
Q Consensus       100 ~~~~v~fDi~i~~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~--------gY~g~~f~Rvi~~f~iqgGd~~~~~g  171 (268)
                      .+++|||||++++++.|+|+||||++.||+||+||++||+ +.++.        .|+|+.||||+|+|||||||++.++|
T Consensus         5 ~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~-~~~g~~~~~g~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g   83 (177)
T 1a58_A            5 DRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCT-GMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDG   83 (177)
T ss_dssp             GCEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHH-CTTCBCTTTCSBCCCTTCBEEEEETTTEEEECCCSSSSS
T ss_pred             CCcEEEEEEEECCEeceeEEEEEcCCCCchHHHHHHHHhc-CCcCcccccCCcceeCCCEEEEEECCCEEEeCCccCCCC
Confidence            5789999999999999999999999999999999999999 32221        29999999999999999999988999


Q ss_pred             CCCccccCCCCCCCccccccCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCCCCCC
Q 024387          172 TGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDY  251 (268)
Q Consensus       172 ~gg~s~~g~~~~de~~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td~~~~  251 (268)
                      +|+.++|+..|++|++.++|.++|+|+|||.+|++++||||||+.+.+|||++|+|||+|++|||||++|++++++.+++
T Consensus        84 ~gg~si~g~~f~dE~~~~~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~~~~~~~  163 (177)
T 1a58_A           84 TGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNR  163 (177)
T ss_dssp             SCCCCTTSSCBCCCCCCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSC
T ss_pred             CCCCcccCCcccCcccCcccCCCeEEEEeeCCCCCceeEEEEECCCCCccCCCEEEEEEEEcCHHHHHHHHhCCCCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEEeeeEec
Q 024387          252 PKVPCRIINSGELP  265 (268)
Q Consensus       252 P~~~I~I~~cGvL~  265 (268)
                      |.++|+|.+||+|.
T Consensus       164 P~~~v~I~~~G~l~  177 (177)
T 1a58_A          164 PLADVVILNCGELV  177 (177)
T ss_dssp             BSSCEEEEEEEEEC
T ss_pred             CCCCeEEEEeEEEC
Confidence            99999999999983

>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A

Probab=100.00  E-value=4.3e-52  Score=355.84  Aligned_cols=165  Identities=60%  Similarity=1.042  Sum_probs=157.1

Q ss_pred             cccceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCCCcccc
Q 024387           99 KVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIY  178 (268)
Q Consensus        99 ~~~~~v~fDi~i~~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~  178 (268)
                      ..+++|||||.+++|+.|+|+||||++.||+||+||++||+ |.+|++|+|+.||||+|+|||||||++.++|+|+.++|
T Consensus         9 ~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~-g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~   87 (173)
T 2r99_A            9 RSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCT-HEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIY   87 (173)
T ss_dssp             -CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHH-TTTSCCSTTCBEEEEETTTEEEECCTTTSSSSCCCBTT
T ss_pred             cCCCEEEEEEEECCccceeEEEEECCCCCcHHHHHHHHHhc-ccCCceecCCEEEEeeCCCEEEeCCcCCCCCCCCCccC
Confidence            35789999999999999999999999999999999999998 56787899999999999999999999988999999999


Q ss_pred             CCCCCCCccccccCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEE
Q 024387          179 GSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRI  258 (268)
Q Consensus       179 g~~~~de~~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td~~~~P~~~I~I  258 (268)
                      +..|++|++.++|.++|+|+|||.+|++++|||||++.+.+|||++|+|||+|++|||||++|++++++ +++|.++|+|
T Consensus        88 g~~f~dE~~~l~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~-~~~P~~~v~I  166 (173)
T 2r99_A           88 GKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSK-DGKPKQKVII  166 (173)
T ss_dssp             BSCBCCCCCCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TCCCSSCEEE
T ss_pred             CCcccCcccCcccCCCcEEEEccCCCCCcccEEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHhCCCC-CCCCCCCeEE
Confidence            999999999999999999999999999999999999999999999999999999999999999999775 5899999999


Q ss_pred             EeeeEec
Q 024387          259 INSGELP  265 (268)
Q Consensus       259 ~~cGvL~  265 (268)
                      .+||+|.
T Consensus       167 ~~cG~l~  173 (173)
T 2r99_A          167 ADCGEYV  173 (173)
T ss_dssp             EEEEECC
T ss_pred             EEeeeEC
Confidence            9999984

>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A

Probab=100.00  E-value=3.6e-52  Score=356.28  Aligned_cols=164  Identities=66%  Similarity=1.165  Sum_probs=155.5

Q ss_pred             ccceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcc-------cCCCEEEEEEcCceeeeCCCcCCCCC
Q 024387          100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYG-------YKGCSFHRIIKDFMIQGGDFTEGDGT  172 (268)
Q Consensus       100 ~~~~v~fDi~i~~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~g-------Y~g~~f~Rvi~~f~iqgGd~~~~~g~  172 (268)
                      .+++|||||++++++.|+|+||||++.||+||+||++||+ +.+|++       |+|+.||||+|+|||||||++.++|+
T Consensus         2 ~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~-~~~g~g~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G~   80 (173)
T 2igv_A            2 SRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCT-GENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGT   80 (173)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHH-TTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTSSSS
T ss_pred             CCCEEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHhc-CCCCCCccCccceECCCEEEEEECCCEEEcCCCCCCCCC
Confidence            4789999999999999999999999999999999999999 444532       99999999999999999999888999


Q ss_pred             CCccccCCCCCCCccccccCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCCCCCCC
Q 024387          173 GGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYP  252 (268)
Q Consensus       173 gg~s~~g~~~~de~~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td~~~~P  252 (268)
                      |+.++|+..|++|++.++|.++|+|+|||.+|++++|||||++.+.+|||++|+|||+|++|||||++|+++++ .+++|
T Consensus        81 gg~siyg~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t-~~~~P  159 (173)
T 2igv_A           81 GGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGS-QSGKP  159 (173)
T ss_dssp             CCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCC-TTSCC
T ss_pred             CCCccCCCcccCcccccCCCCCeEEEEeeCCCCCcceEEEEEcCCccccCCCeeEEEEEecCHHHHHHHHhCCC-CCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988 56899


Q ss_pred             CCCeEEEeeeEec
Q 024387          253 KVPCRIINSGELP  265 (268)
Q Consensus       253 ~~~I~I~~cGvL~  265 (268)
                      .++|+|.+||+|+
T Consensus       160 ~~~v~I~~~g~l~  172 (173)
T 2igv_A          160 VKDCMIADCGQLK  172 (173)
T ss_dssp             SSCEEEEEEEEEC
T ss_pred             CCCEEEEEeEEEc
Confidence            9999999999996

>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens}

Probab=100.00  E-value=5.2e-52  Score=358.52  Aligned_cols=171  Identities=60%  Similarity=1.061  Sum_probs=158.0

Q ss_pred             cccccccccceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCC
Q 024387           93 DVELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGT  172 (268)
Q Consensus        93 ~~~~~~~~~~~v~fDi~i~~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~  172 (268)
                      ....++..+++||||++++++++|+|+||||++.||+||+||++||+ +.+|++|+|+.||||+|+|||||||++.+++.
T Consensus        14 ~~~~~~~~~p~v~~di~i~~~~~G~I~ieL~~~~aP~t~~NF~~L~~-~~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~   92 (184)
T 3rdd_A           14 NLYFQGMVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALST-GEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGT   92 (184)
T ss_dssp             -------CCCEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHH-TTTSCSSTTCBCCEEETTTEEEECCTTTSSSS
T ss_pred             CCCcccCCCCEEEEEEeECCEeeeEEEEEEeCCCCcHHHHHHHHHhc-cCcCcccCCCEEEEccCCcEEEeCCCCCCCCC
Confidence            33456677999999999999999999999999999999999999999 55688899999999999999999999889999


Q ss_pred             CCccccCCCCCCCccccccCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCCCCCCC
Q 024387          173 GGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYP  252 (268)
Q Consensus       173 gg~s~~g~~~~de~~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td~~~~P  252 (268)
                      |+.++|+..|++|++.++|.++|+|+||+.+|++++|||||++.+.++||++|+|||+|++|||||++|+++++ ++++|
T Consensus        93 gg~si~g~~~~de~~~l~h~~~G~lsmA~~gp~s~gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~-~~g~P  171 (184)
T 3rdd_A           93 GGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKT  171 (184)
T ss_dssp             CCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCC-TTSCC
T ss_pred             CCcccCCCcccCcccccccCCCcEEEEEeCCCCCcccEEEEEeCCchhhCCCceEEEEEecCHHHHHHHHhcCC-CCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999876 57899


Q ss_pred             CCCeEEEeeeEec
Q 024387          253 KVPCRIINSGELP  265 (268)
Q Consensus       253 ~~~I~I~~cGvL~  265 (268)
                      .++|+|.+||+|+
T Consensus       172 ~~~v~I~~cG~l~  184 (184)
T 3rdd_A          172 SKKITIADCGQLE  184 (184)
T ss_dssp             SSCEEEEEEEECC
T ss_pred             cCCeEEEeCeEEC
Confidence            9999999999985

>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*

Probab=100.00  E-value=4.1e-52  Score=355.06  Aligned_cols=162  Identities=60%  Similarity=1.037  Sum_probs=154.8

Q ss_pred             ccceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcc-------cCCCEEEEEEcCceeeeCCCcCCCCC
Q 024387          100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYG-------YKGCSFHRIIKDFMIQGGDFTEGDGT  172 (268)
Q Consensus       100 ~~~~v~fDi~i~~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~g-------Y~g~~f~Rvi~~f~iqgGd~~~~~g~  172 (268)
                      .+++|||||++++++.|+|+||||++.||+||+||++||+ +. +++       |+|+.||||+|+|||||||++.++|+
T Consensus         2 ~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~-~~-g~g~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~   79 (170)
T 1qng_A            2 KRSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCT-GE-KIGSRGKNLHYKNSIFHRIIPQFMCQGGDITNGNGS   79 (170)
T ss_dssp             CSCEEEEEEEESSSEEEEEEEEECTTTCHHHHHHHHHHHH-TC-EECTTSSEECCTTCBCCEEETTTEEEECCTTTSSSS
T ss_pred             CCCEEEEEEeECCEeceeEEEEEcCCCCCHHHHHHHHHhc-cC-CcCccCccceECCCEEEEEECCCEEEcCCccCCCCC
Confidence            4789999999999999999999999999999999999998 32 444       99999999999999999999888999


Q ss_pred             CCccccCCCCCCCccccccCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCCCCCCC
Q 024387          173 GGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYP  252 (268)
Q Consensus       173 gg~s~~g~~~~de~~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td~~~~P  252 (268)
                      |+.++|++.|++|++.++|.++|+|+||+.+|++++||||||+.+.+|||++|+|||+|++|||||++|+++++ ++++|
T Consensus        80 gg~si~g~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~t-~~~~P  158 (170)
T 1qng_A           80 GGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGA-KSGYV  158 (170)
T ss_dssp             CCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCC-TTCCC
T ss_pred             CCccccCCcccccccccccCCCCEEEEeecCCCCcccEEEEECCCCcccCCCeeEEEEEECCHHHHHHHHhCCC-CCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999 78999


Q ss_pred             CCCeEEEeeeEe
Q 024387          253 KVPCRIINSGEL  264 (268)
Q Consensus       253 ~~~I~I~~cGvL  264 (268)
                      .++|+|.+||+|
T Consensus       159 ~~~v~I~~cG~l  170 (170)
T 1qng_A          159 KRSVVITDCGEL  170 (170)
T ss_dssp             SSCEEEEEEEEC
T ss_pred             CCCeEEEeceeC
Confidence            999999999997

>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A

Probab=100.00  E-value=3.7e-52  Score=357.43  Aligned_cols=165  Identities=59%  Similarity=1.032  Sum_probs=156.8

Q ss_pred             ccceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHHhcCC----CCcccCCCEEEEEEcCceeeeCCCcCCCCCCCc
Q 024387          100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGE----KGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGI  175 (268)
Q Consensus       100 ~~~~v~fDi~i~~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~----kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~  175 (268)
                      .+++|||||.+++++.|+|+||||++.||+||+||++||+.++    +.++|+|+.||||+|+|||||||++.++|+|+.
T Consensus         9 ~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~g~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G~gg~   88 (177)
T 1mzw_A            9 VNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVA   88 (177)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCEETTEECSSTTCBCCEEETTTEEEECCTTTSSSCCCC
T ss_pred             CCCEEEEEEEECCeeceeEEEEEcCCCCcHHHHHHHHHHhcccCCcCccceECCCEEEEEECCCEEEcCCcccCCCCCCC
Confidence            4789999999999999999999999999999999999999543    113499999999999999999999888999999


Q ss_pred             cccCCCCCCCccccccCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCCCCCCCCCC
Q 024387          176 SIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVP  255 (268)
Q Consensus       176 s~~g~~~~de~~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td~~~~P~~~  255 (268)
                      ++|++.|++|++.++|+++|+||||+.+|++++|||||++.+.++||++|+|||+|++|||||++|++++++++++|.++
T Consensus        89 si~g~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~t~~~~~P~~~  168 (177)
T 1mzw_A           89 SIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLP  168 (177)
T ss_dssp             CTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSSC
T ss_pred             ccCCCcccCcccccccCCCCEEEEccCCCCCcceEEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEeeeEe
Q 024387          256 CRIINSGEL  264 (268)
Q Consensus       256 I~I~~cGvL  264 (268)
                      |+|.+||+|
T Consensus       169 v~I~~cG~l  177 (177)
T 1mzw_A          169 VVISQCGEM  177 (177)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEeceeC
Confidence            999999997

>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*

Probab=100.00  E-value=1.4e-51  Score=356.23  Aligned_cols=164  Identities=63%  Similarity=1.046  Sum_probs=154.5

Q ss_pred             ccccceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcc-------cCCCEEEEEEcCceeeeCCCcCCC
Q 024387           98 AKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYG-------YKGCSFHRIIKDFMIQGGDFTEGD  170 (268)
Q Consensus        98 ~~~~~~v~fDi~i~~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~g-------Y~g~~f~Rvi~~f~iqgGd~~~~~  170 (268)
                      ...+++|||||.+++++.|+|+||||++.||+||+||++||+ +.+|++       |+|+.||||+|+|||||||++.++
T Consensus        16 ~~~~~~v~~di~i~~t~~G~I~ieL~~~~aP~t~~NF~~L~~-g~~g~~~~~~~~~Y~g~~FhRVi~~f~iQgGd~~~~~   94 (186)
T 2poy_A           16 FQGNPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCT-GEKGMGQSGKPLCYTGSFFHRIIPQFMIQGGDFTRGD   94 (186)
T ss_dssp             --CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHH-TTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTSS
T ss_pred             cCCCCEEEEEEeECCEecccEEEEEeCCCCcHHHHHHHHHhc-ccCCccccCccceECCCEEEEEeCCCEEEeCCCCCCC
Confidence            456899999999999999999999999999999999999998 556665       999999999999999999998889


Q ss_pred             CCCCccccCCCCCCCccccccCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCCCCC
Q 024387          171 GTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTD  250 (268)
Q Consensus       171 g~gg~s~~g~~~~de~~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td~~~  250 (268)
                      |+|+.++|++.|++|++.++|.++|+|+||+.+||+++|||||++.+.++||++|+|||+|++|||||++|+++++ .++
T Consensus        95 G~gg~si~g~~f~dE~~~l~h~~~G~lsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t-~~~  173 (186)
T 2poy_A           95 GTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVLEGMEVVKSIEKCGS-QNG  173 (186)
T ss_dssp             SSCCCCTTC-CBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCC-TTS
T ss_pred             CCCCCccCCCcccCcccccccCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCeeEEEEEecCHHHHHHHHhCCC-CCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999988 678


Q ss_pred             CCCCCeEEEeeeE
Q 024387          251 YPKVPCRIINSGE  263 (268)
Q Consensus       251 ~P~~~I~I~~cGv  263 (268)
                      +|.++|+|.+||+
T Consensus       174 ~P~~~v~I~~cG~  186 (186)
T 2poy_A          174 KPTKSVCITASGV  186 (186)
T ss_dssp             CCSSCEEEEEEEC
T ss_pred             CCCCCEEEEeCCC
Confidence            9999999999996

>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi}

Probab=100.00  E-value=4.8e-51  Score=354.86  Aligned_cols=166  Identities=54%  Similarity=0.898  Sum_probs=158.1

Q ss_pred             cccceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCCCcccc
Q 024387           99 KVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIY  178 (268)
Q Consensus        99 ~~~~~v~fDi~i~~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~  178 (268)
                      +.+++|||||.+++++.|+|+||||++.||+||+||++||+ +.++++|+|+.||||+|+|||||||++.+++.|+.++|
T Consensus        25 ~~~p~v~~di~i~~t~~G~I~ieL~~~~aP~tv~NF~~L~~-g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~  103 (193)
T 3k2c_A           25 EASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCE-RPKGEGYKGSTFHRIIPGFMVQGGDYTAHNGTGGRSIY  103 (193)
T ss_dssp             -CTTCEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHH-SCTTSSSTTCBEEEEETTTEEEECCTTTSSSSCCCCTT
T ss_pred             cCCCEEEEEEeECCEEeeEEEEEEcCCCChHHHHHHHHHhc-cccCCcccCCEEEEEeCCCEEEeCCCCCCCCcCCcccC
Confidence            45789999999999999999999999999999999999999 56788899999999999999999999889999999999


Q ss_pred             CCCCCCCccccccCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCCCCCCCC--CCe
Q 024387          179 GSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPK--VPC  256 (268)
Q Consensus       179 g~~~~de~~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td~~~~P~--~~I  256 (268)
                      +..|++|++.++|.++|+|+||+.+|++++|||||++.+.++||++|+|||+|++|||||++|++++++ +++|.  ++|
T Consensus       104 g~~f~dE~~~l~h~~~G~lsmAn~gp~t~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~-~g~P~~~~~v  182 (193)
T 3k2c_A          104 GEKFPDENFELKHTKEGILSMANCGAHTNGSQFFITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSE-SGQVKKGYRI  182 (193)
T ss_dssp             SSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TCCCCTTCCE
T ss_pred             CCcccccccccccCCCcEEEEEeCCCCCCccEEEEECCCCcccCCCccEEEEEeCCHHHHHHHHhcCCC-CCcCccCccE
Confidence            999999999999999999999999999999999999999999999999999999999999999999887 67999  999


Q ss_pred             EEEeeeEecC
Q 024387          257 RIINSGELPL  266 (268)
Q Consensus       257 ~I~~cGvL~~  266 (268)
                      +|.+||+|+.
T Consensus       183 ~I~~cG~l~~  192 (193)
T 3k2c_A          183 EIRDCGVLGS  192 (193)
T ss_dssp             EEEEEEECC-
T ss_pred             EEEEceEeCC
Confidence            9999999974

>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1

Probab=100.00  E-value=2.4e-51  Score=350.92  Aligned_cols=163  Identities=57%  Similarity=0.979  Sum_probs=125.0

Q ss_pred             ccceEEEEEEEC--Ce---eeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCCC
Q 024387          100 VTTKVFFDVDIG--GK---PAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGG  174 (268)
Q Consensus       100 ~~~~v~fDi~i~--~t---~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg  174 (268)
                      +| +|||||+++  ++   ++|+|+||||++.||+||+||++||+ |.+|++|+|+.||||+|+|||||||+..++|+|+
T Consensus         2 it-~vf~di~i~~~~~~~T~~G~i~ieL~~~~aP~t~~NF~~L~~-g~~g~~Y~g~~fhRvi~~f~iQgGd~~~~~g~gg   79 (172)
T 2c3b_A            2 MS-QVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCK-RPAGEGYRESTFHRIIPNFMIQGGDFTRGNGTGG   79 (172)
T ss_dssp             CC-CEEEEEEECCTTCSCCEEEEEEEEECTTTSHHHHHHHHHHHH-SCTTTSSTTCBCCEEETTTEEEECC---------
T ss_pred             ce-EEEEEEEeCCCCceecccccEEEEEcCCCCcHHHHHHHHHhc-cCCCcccCCCEEEEEeCCCEEEeCCcCCCCCCCC
Confidence            46 999999998  64   45999999999999999999999999 6678889999999999999999999877899999


Q ss_pred             ccccCCCCCCCccccccCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEc--CHHHHHHhhcCCCCCCC-C
Q 024387          175 ISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVID--GMDVVRKLESVETSRTD-Y  251 (268)
Q Consensus       175 ~s~~g~~~~de~~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~Vve--GmdvL~~I~~~~td~~~-~  251 (268)
                      .++|++.|++|+..++|.++|+|+|||.+|++++|||||++.+.++||++|+|||+|++  |||||++|++++++..+ +
T Consensus        80 ~si~g~~f~dE~~~~~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tvFG~Vv~~~G~dvv~~I~~~~t~~~~~~  159 (172)
T 2c3b_A           80 RSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVR  159 (172)
T ss_dssp             -------------CHHHHHTCEEEEC---------CEEEECSCCTTCCSCCEEEEEECSHHHHHHHHHHHTTCCTTSCCC
T ss_pred             cccCCCcccCcccccccCCCeEEEEeeCCCCCcccEEEEECCCCCccCCCeeEEEEEEecCCHHHHHHHHhCCCCCCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999  99999999999998765 9


Q ss_pred             CCCCeEEEeeeEe
Q 024387          252 PKVPCRIINSGEL  264 (268)
Q Consensus       252 P~~~I~I~~cGvL  264 (268)
                      |.++|+|.+||+|
T Consensus       160 P~~~v~I~~cG~l  172 (172)
T 2c3b_A          160 SNTRPKIVNCGEL  172 (172)
T ss_dssp             SSSCCEEEEEEEC
T ss_pred             CCCCeEEEeCeeC
Confidence            9999999999997

>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1

Probab=100.00  E-value=1e-49  Score=354.27  Aligned_cols=164  Identities=49%  Similarity=0.921  Sum_probs=156.1

Q ss_pred             ccceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHHhcCCCC-----cccCCCEEEEEEcCceeeeCCCcCCCCCCC
Q 024387          100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKG-----YGYKGCSFHRIIKDFMIQGGDFTEGDGTGG  174 (268)
Q Consensus       100 ~~~~v~fDi~i~~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg-----~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg  174 (268)
                      .+++||||+.+++++.|+|+||||.+.||+||+||++||+.++ +     +.|+|+.||||+|+|||||||++.++|+|+
T Consensus        58 ~~~~V~~disi~~t~~G~I~ieL~~d~aP~tv~NF~~L~~~~~-g~~g~~~~Y~gt~FHRVi~~FmiQgGD~~~g~G~Gg  136 (229)
T 1z81_A           58 SNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEY-KVNNLPVGYKNTIFHRVIKEFMIQGGDFINHNGSGS  136 (229)
T ss_dssp             TCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCC-BSSSSBCSSTTEECCEEETTTEEEECCTTTSSSCCC
T ss_pred             CCcEEEEEEeECCeecccEEEEEcCCCCCHHHHHHHHHhhCCC-CCcCCCceECCCEEEEEeCCCEEEcCCCcCCCCCCC
Confidence            4789999999999999999999999999999999999999542 2     239999999999999999999988999999


Q ss_pred             ccccCCCCCCCccccccCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEE--cCHHHHHHhhcCCCCCC-CC
Q 024387          175 ISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVI--DGMDVVRKLESVETSRT-DY  251 (268)
Q Consensus       175 ~s~~g~~~~de~~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~Vv--eGmdvL~~I~~~~td~~-~~  251 (268)
                      .++|+..|++|++.++|.++|+|+|||.+|++++||||||+.+.++||++|+|||+|+  +|||||++|++++++.+ ++
T Consensus       137 ~siyg~~f~dE~~~l~h~~~G~LsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~~eGmdVv~~I~~~~t~~~~~~  216 (229)
T 1z81_A          137 LSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYK  216 (229)
T ss_dssp             CBTTBSCCCCCCCCSCCCSTTEEEECCSSSSCCCSCEEEESSCCGGGBTTBCEEEEECSHHHHHHHHHHHHSCBCTTTCC
T ss_pred             CccCCCcccccccccccCCCcEEEeccCCCCCcccEEEEECCCCcccCCCeeEEEEEEecCcHHHHHHHHhCCCCCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999  99999999999999987 99


Q ss_pred             CCCCeEEEeeeEe
Q 024387          252 PKVPCRIINSGEL  264 (268)
Q Consensus       252 P~~~I~I~~cGvL  264 (268)
                      |.++|+|.+||+|
T Consensus       217 P~~~V~I~~cG~l  229 (229)
T 1z81_A          217 PKIPINVVECGEL  229 (229)
T ss_dssp             BSSCEEEEEEEEC
T ss_pred             CCCCeEEEeCeeC
Confidence            9999999999997

>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus}

Probab=100.00  E-value=5.9e-49  Score=350.77  Aligned_cols=164  Identities=27%  Similarity=0.483  Sum_probs=149.9

Q ss_pred             ccceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHHhcCC-----------C----C--cccCCCEEEEEEcCceee
Q 024387          100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGE-----------K----G--YGYKGCSFHRIIKDFMIQ  162 (268)
Q Consensus       100 ~~~~v~fDi~i~~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~-----------k----g--~gY~g~~f~Rvi~~f~iq  162 (268)
                      .+++|||||.+++|+.|+|+||||.+.||+||+||++||+ |.           +    |  |+|+|+.||||+++||||
T Consensus        13 ~~p~v~~di~i~~t~~G~I~ieL~~d~aP~tv~NF~~L~~-g~~~~~~p~~~~~~~~~~G~~~~Y~gt~FHRVi~~FmiQ   91 (234)
T 2ose_A           13 KNPRVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTN-GKTYRVNSNGTGKYKYNRHINRTYEGCKFHNVLHNNYIV   91 (234)
T ss_dssp             SSCEEEEEEEETTEEEEEEEEEECGGGCHHHHHHHHHHHH-TCCCC---------------CCCSTTCBCCEEETTTEEE
T ss_pred             CCCEEEEEEEECCcccceEEEEEcCCCCcHHHHHHHHHhc-CCccccccccccccccccCCceEECCcEEEEEECCCEEE
Confidence            5889999999999999999999999999999999999999 33           2    4  779999999999999999


Q ss_pred             eCCCcCCCCCCCccccCCC-----CCCCccccccCCCeEEEEec----CCCCCCCccceEEecC------CCCCCCCceE
Q 024387          163 GGDFTEGDGTGGISIYGSS-----FEDESFVLKHVGPGVLSMAN----AGPNTNGSQFFICTVK------TPWLDNRHVV  227 (268)
Q Consensus       163 gGd~~~~~g~gg~s~~g~~-----~~de~~~l~h~~~G~lsma~----~gp~s~gSqFfItl~~------~~~LDg~~~V  227 (268)
                      |||+..++|+|+.++||..     |+  ++.++|.++|+|||||    .+|++++||||||+.+      .+|||++|+|
T Consensus        92 gGd~~~g~G~Gg~siyg~~~~p~~f~--~~~l~h~~~G~lsMAn~~~~~gpntngSQFFIt~~~~~~~~g~p~LDg~~tV  169 (234)
T 2ose_A           92 SGDIYNSNGSSAGTVYCDEPIPPVFG--DYFYPHESKGLLSLVPYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVV  169 (234)
T ss_dssp             ECCCC----CCCCCTTTTCCBCCCCC--SCCCCSCSTTEEEECCEECTTSCEEBCSCEEEESSCCCTTSSGGGSCTTSEE
T ss_pred             cCCccCCCCCCCccccCCccCccccc--CcCccCCCCCEEEEecccccCCCCCccceEEEEecCccccCCCcccCCCeeE
Confidence            9998889999999999987     66  5689999999999999    8999999999999999      9999999999


Q ss_pred             EEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEeeeEecC
Q 024387          228 FGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPL  266 (268)
Q Consensus       228 FG~VveGmdvL~~I~~~~td~~~~P~~~I~I~~cGvL~~  266 (268)
                      ||+|++|||||++|++++++.+++|.++|+|.+||+|+.
T Consensus       170 FG~Vv~GmdVv~~I~~~~t~~~~~P~~~V~I~~~~~l~~  208 (234)
T 2ose_A          170 IGQVYGGLDVLDKINSMIKPYAGRKYPTFSIGKCGAYLD  208 (234)
T ss_dssp             EEEEEECHHHHHHHHHHTCCCTTCCCCCEEEEEEEECCC
T ss_pred             EEEEeCCHHHHHHHHhCCcCCCCCccCCEEEEEEEEecC
Confidence            999999999999999999999999999999999999964

>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A

Probab=100.00  E-value=2.6e-47  Score=329.43  Aligned_cols=155  Identities=43%  Similarity=0.648  Sum_probs=146.6

Q ss_pred             EEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCCCccccCCCCCC
Q 024387          105 FFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFED  184 (268)
Q Consensus       105 ~fDi~i~~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~~d  184 (268)
                      ++++.+. |++|+|+||||+++||+||+||++||+.|+    |+|+.||||+|+|||||||++ ++|+|+.++||..|++
T Consensus        16 ~~~v~i~-t~~G~i~ieL~~~~aP~t~~NF~~L~~~g~----Y~g~~FhRvi~~f~iQgGd~~-~~g~gg~si~g~~~~d   89 (185)
T 2poe_A           16 FQGVRII-TNYGDLKFELFCSQCPKACKNFLALSASGY----YKNTIFHKNIKGFIIQGGDPT-GTGKGGESIYGRYFDD   89 (185)
T ss_dssp             CCEEEEE-ETTEEEEEEECTTTCHHHHHHHHHHHHTTT----TTTEEEEEECTTSEEEEEETT-SSSSCCCBTTBSCBCC
T ss_pred             ceEEEEE-ecCccEEEEEeCCCCcHHHHHHHHHhccCC----CCCCEEEEEECCCEEEcCCCC-CCCCCCCccCCCcccc
Confidence            4556665 889999999999999999999999999666    999999999999999999987 7889999999999999


Q ss_pred             Cc-cccccCCCeEEEEecCC----CCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEE
Q 024387          185 ES-FVLKHVGPGVLSMANAG----PNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRII  259 (268)
Q Consensus       185 e~-~~l~h~~~G~lsma~~g----p~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td~~~~P~~~I~I~  259 (268)
                      |. ..++|.++|+|+||+.+    |++++|||||++.++++||++|+|||+|++|||||++|++++++.+++|.++|+|.
T Consensus        90 E~~~~l~h~~~G~lsmA~~g~~~~p~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~v~I~  169 (185)
T 2poe_A           90 EIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIK  169 (185)
T ss_dssp             CCCTTSCCCSTTEEEECCSCC-CCCSCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTSCBSSCCEEE
T ss_pred             cccCCCccCCCeEEEEecCCCCCCCCCccceEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCcCCCeEEE
Confidence            98 78899999999999999    99999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeEec
Q 024387          260 NSGELP  265 (268)
Q Consensus       260 ~cGvL~  265 (268)
                      +|+++.
T Consensus       170 ~~~i~~  175 (185)
T 2poe_A          170 DIVIHS  175 (185)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            999995

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=100.00  E-value=9.1e-47  Score=353.49  Aligned_cols=164  Identities=66%  Similarity=1.084  Sum_probs=156.0

Q ss_pred             cceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCc--------ccCCCEEEEEEcCceeeeCCCcCCCCC
Q 024387          101 TTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGY--------GYKGCSFHRIIKDFMIQGGDFTEGDGT  172 (268)
Q Consensus       101 ~~~v~fDi~i~~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~--------gY~g~~f~Rvi~~f~iqgGd~~~~~g~  172 (268)
                      +++||||+.+++++.|+|+||||++.||+||+||++||+ +.+|+        .|+|+.||||+|+|||||||++.++|+
T Consensus        15 ~~~v~~~~~~~~~~~G~i~~~l~~~~~P~t~~nf~~l~~-~~~~~~~~~g~~~~y~~~~fhrv~~~f~~q~Gd~~~~~g~   93 (370)
T 1ihg_A           15 NPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCT-GEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGT   93 (370)
T ss_dssp             SCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHH-CTTCBCTTTSSBSCCTTCBEEEEETTTEEEECCTTTSSSS
T ss_pred             CCeEEEEEEECCEecccEEEEEcCCCCchHHHHHHHHcC-CCcCcCccCCCcceeCCcEeEEEECCcEEECCCCCCCCCC
Confidence            789999999999999999999999999999999999999 43332        399999999999999999999989999


Q ss_pred             CCccccCCCCCCCccccccCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCCCCCCC
Q 024387          173 GGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYP  252 (268)
Q Consensus       173 gg~s~~g~~~~de~~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td~~~~P  252 (268)
                      ||.++||..|++|++.++|+++|+|+||+.||+++|||||||+.+.+|||++|+|||+|++||+||++|++.+++. ++|
T Consensus        94 g~~~~~~~~~~~e~~~~~~~~~g~l~ma~~~~~~~~sqffi~~~~~~~ld~~~~vfG~v~~g~~v~~~i~~~~~~~-~~P  172 (370)
T 1ihg_A           94 GGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKG-EKP  172 (370)
T ss_dssp             CCCBTTBSCBCCCCCCBCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEET-TEE
T ss_pred             CCCCCCCCCcCCCcCCcCCCCCeEEEEeeCCCCCCCceEEEeCCCCcccCCCceEEEEEecCHHHHHHHHcCCCCC-Ccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998877 999


Q ss_pred             CCCeEEEeeeEecC
Q 024387          253 KVPCRIINSGELPL  266 (268)
Q Consensus       253 ~~~I~I~~cGvL~~  266 (268)
                      .++|+|.+||++..
T Consensus       173 ~~~v~I~~~g~l~~  186 (370)
T 1ihg_A          173 AKLCVIAECGELKE  186 (370)
T ss_dssp             SSCEEEEEEEEECT
T ss_pred             ceeEEEEEEEEecc
Confidence            99999999999954

>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A*

Probab=100.00  E-value=6.4e-47  Score=320.32  Aligned_cols=149  Identities=48%  Similarity=0.740  Sum_probs=142.3

Q ss_pred             eeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCCCccccCCCCCCCcc-cccc
Q 024387          113 KPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESF-VLKH  191 (268)
Q Consensus       113 t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~~de~~-~l~h  191 (268)
                      |+.|+|+||||+++||+||+||++||+.|+    |+|+.|||++|+|||||||+. +++.|+.++|+..|++|.. .++|
T Consensus         7 T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~----Y~g~~fhRvi~~f~iQgGd~~-~~g~gg~si~g~~~~dE~~~~l~h   81 (161)
T 2ok3_A            7 TDVGDIKIEVFCERTPKTCENFLALCASNY----YNGCIFHRNIKGFMVQTGDPT-GTGRGGNSIWGKKFEDEYSEYLKH   81 (161)
T ss_dssp             ETTEEEEEEECTTTCHHHHHHHHHHHHTTT----TTTCBCCEEETTTEEEECCTT-SSSSCCCCTTSSCBCCCCCTTCCS
T ss_pred             eCCccEEEEEcCCCCcHHHHHHHHHhhhcc----cCCCEEEEEECCCEEecCCCC-CCCCCCCcccCCccccccCcCcCc
Confidence            789999999999999999999999999766    999999999999999999987 7889999999999999975 7899


Q ss_pred             CCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCCCC-CCCCCCeEEEeeeEecC
Q 024387          192 VGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRT-DYPKVPCRIINSGELPL  266 (268)
Q Consensus       192 ~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td~~-~~P~~~I~I~~cGvL~~  266 (268)
                      +++|+|+||+.+|++++|||||++.+.++||++|+|||+|++|||||++|++++++.+ ++|.++|+|.+|.++..
T Consensus        82 ~~~G~lsma~~gp~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~~~~~~~~P~~~v~I~~~~i~~~  157 (161)
T 2ok3_A           82 NVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIHAN  157 (161)
T ss_dssp             CSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTTCCBSSCCBEEEEEEECC
T ss_pred             CCCeEEEEecCCCCCcceEEEEEcCCCCccCCCEeEEEEEeCCHHHHHHHHhCCccCCCCCcCCCeEEEEEEEecC
Confidence            8999999999999999999999999999999999999999999999999999999987 99999999999999863

>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1

Probab=100.00  E-value=6.3e-47  Score=320.12  Aligned_cols=149  Identities=49%  Similarity=0.785  Sum_probs=141.5

Q ss_pred             CeeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCCCccccCCCCCCCcc-ccc
Q 024387          112 GKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESF-VLK  190 (268)
Q Consensus       112 ~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~~de~~-~l~  190 (268)
                      .|+.|+|+||||+++||+||+||++||+.|+    |+|+.|||++|+|||||||+. ++|.|+.++||..|++|.. .++
T Consensus        11 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~----Y~g~~fhRvi~~f~iQgGd~~-~~g~gg~si~g~~~~dE~~~~l~   85 (160)
T 2fu0_A           11 YTTMGDIHISLFYKECKKTVQNFSVHSINGY----YNNCIFHRVIKHFMVQTGDPS-GDGTGGESIWGNEFEDEFFDHLN   85 (160)
T ss_dssp             EETTEEEEEEECTTTCHHHHHHHHHHHHTTT----TTTCBCCEEETTTEEEECCTT-SSSSCCCCTTSSCBCCCCBTTBC
T ss_pred             EecCccEEEEEeCCCChHHHHHHHHHhccCc----cCCCEEEEEECCCEEEeCCcC-CCCCCCCcccCCCccccccCCcc
Confidence            4678999999999999999999999999666    999999999999999999986 7889999999999999987 689


Q ss_pred             cCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEeeeEec
Q 024387          191 HVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELP  265 (268)
Q Consensus       191 h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td~~~~P~~~I~I~~cGvL~  265 (268)
                      |.++|+|+||+.+|++++|||||++.++++||++|+|||+|++|||||++|++++++++++|.++|+|.+|.+++
T Consensus        86 h~~~G~lsmA~~gp~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~~~v~~  160 (160)
T 2fu0_A           86 HSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILNIKINN  160 (160)
T ss_dssp             SSSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCCBEEEEEEC-
T ss_pred             cCCceEEEEecCCCCCcccEEEEECCCCCccCCCcEEEEEEEcCHHHHHHHHhCCcCCCCCcCCCeEEEEEEEeC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999863

>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A

Probab=100.00  E-value=1.9e-46  Score=318.95  Aligned_cols=154  Identities=49%  Similarity=0.838  Sum_probs=144.5

Q ss_pred             cceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCCCccccCC
Q 024387          101 TTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGS  180 (268)
Q Consensus       101 ~~~v~fDi~i~~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~  180 (268)
                      +++|.|+     |++|+|+||||++.||+||+||++||+.|+    |+|+.||||+|+|||||||+. +++.|+.++|+.
T Consensus        11 ~~~v~l~-----t~~G~i~ieL~~~~aP~t~~NF~~L~~~g~----Y~g~~fhRvi~~f~iQgGd~~-~~g~gg~si~g~   80 (166)
T 2x7k_A           11 PPNVYLE-----TSMGIIVLELYWKHAPKTCKNFAELARRGY----YNGTKFHRIIKDFMIQGGDPT-GTGRGGASIYGK   80 (166)
T ss_dssp             CSEEEEE-----ETTEEEEEEECTTTCHHHHHHHHHHHHHTT----TTTEECCEEETTTEEEECCTT-SSSSCCCCTTSS
T ss_pred             CCEEEEE-----eCCCcEEEEEccCCCCHHHHHHHHHHhcCC----CCCCEEEEEECCCEEEcCCCC-CCCCCCCccCCC
Confidence            4566654     457999999999999999999999999766    999999999999999999987 788999999999


Q ss_pred             CCCCCc-cccccCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEE
Q 024387          181 SFEDES-FVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRII  259 (268)
Q Consensus       181 ~~~de~-~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td~~~~P~~~I~I~  259 (268)
                      .|++|. ..++|.++|+|+|||.+|++++|||||++.+.++||++|+|||+|++|||||++|++++++.+++|.++|+|.
T Consensus        81 ~~~dE~~~~l~h~~~G~lsmAn~gp~s~gSQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~t~~~~~P~~~i~I~  160 (166)
T 2x7k_A           81 QFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKII  160 (166)
T ss_dssp             CBCCCCCTTSCCCSTTEEEECBSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHTTSCBCTTSCBSSCCEEE
T ss_pred             ccccccccccCCCCCeEEEEeeCCCCCccceEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHcCCcCCCCCcCCCeEEE
Confidence            999998 5889988999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeEe
Q 024387          260 NSGEL  264 (268)
Q Consensus       260 ~cGvL  264 (268)
                      +|.++
T Consensus       161 ~~~i~  165 (166)
T 2x7k_A          161 KAYPS  165 (166)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            99986

>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1

Probab=100.00  E-value=3.9e-46  Score=324.53  Aligned_cols=156  Identities=42%  Similarity=0.680  Sum_probs=144.2

Q ss_pred             cceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCCCccccCC
Q 024387          101 TTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGS  180 (268)
Q Consensus       101 ~~~v~fDi~i~~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~  180 (268)
                      +.+|.|+     |+.|+|+||||++.||+||+||++||+.|+    |+|+.||||+|+|||||||++ ++|.|+.++||.
T Consensus        38 ~~~V~l~-----T~~G~I~ieL~~~~aP~tv~NF~~L~~~g~----Y~g~~FhRVi~~f~iQgGd~~-~~g~gg~si~g~  107 (196)
T 2b71_A           38 RGYITIY-----TNLGDFEVELYWYHSPKTCLNFYTLCEMGF----YDNTIFHRVIPNFVIQGGDPT-GTGKGGKSIYGE  107 (196)
T ss_dssp             SCEEEEE-----ETTEEEEEEECTTTSHHHHHHHHHHHHTTT----TTTEEEEEEETTTEEEEEETT-SSSSCCCBTTBS
T ss_pred             CcEEEEE-----eCCCCEEEEEeCCCCcHHHHHHHHHhhcCC----cCCCEEEEEeCCcEEEcCCCC-CCCCCCCccCCC
Confidence            4566665     567999999999999999999999999666    999999999999999999987 788999999999


Q ss_pred             CCCCCc-cccccCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEE
Q 024387          181 SFEDES-FVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRII  259 (268)
Q Consensus       181 ~~~de~-~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td~~~~P~~~I~I~  259 (268)
                      .|++|. ..++|.++|+|+||+.+|++++|||||++.+.++||++|+|||+|++|||||++|++++++.+++|.++|+|.
T Consensus       108 ~~~dE~~~~l~h~~~G~lsMAn~gpns~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~i~I~  187 (196)
T 2b71_A          108 YFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQTTATNKPIFDLKIL  187 (196)
T ss_dssp             CBCCCCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTCCBSSCCEEE
T ss_pred             cccccccCCcCcCCCeEEEEccCCCCCcccEEEEECCCCCccCCCEeEEEEEecCHHHHHHHHhCCcCCCCCCCCCeEEE
Confidence            999995 6789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeEecC
Q 024387          260 NSGELPL  266 (268)
Q Consensus       260 ~cGvL~~  266 (268)
                      +|+++..
T Consensus       188 ~~~i~~d  194 (196)
T 2b71_A          188 RTSTAVN  194 (196)
T ss_dssp             EEEC---
T ss_pred             EEEEecC
Confidence            9999853

>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1

Probab=100.00  E-value=4.1e-46  Score=324.52  Aligned_cols=149  Identities=46%  Similarity=0.768  Sum_probs=142.1

Q ss_pred             eeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCCCccccCCCCCCC-cccccc
Q 024387          113 KPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDE-SFVLKH  191 (268)
Q Consensus       113 t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~~de-~~~l~h  191 (268)
                      |+.|+|+||||++.||+||+||++||+.|+    |+|+.||||+|+|||||||++ ++|.|+.++||..|++| +..++|
T Consensus        26 T~~G~I~ieL~~~~aP~tv~NF~~L~~~g~----Ydg~~FhRVi~~f~iQgGd~~-~~g~Gg~si~g~~f~dE~~~~l~h  100 (197)
T 1zkc_A           26 TNKGDLNLELHCDLTPKTCENFIRLCKKHY----YDGTIFHRSIRNFVIQGGDPT-GTGTGGESYWGKPFKDEFRPNLSH  100 (197)
T ss_dssp             ETTEEEEEEECTTTSHHHHHHHHHHHHTTT----TTTEEEEEEETTTEEEECCTT-SSSSCCCBTTBSCBCCCCCTTCCS
T ss_pred             eCCccEEEEEcCCCCcHHHHHHHHHHhcCC----CCCCEEEEEeCCCEEEcCCCC-CCCCCCCccCCCccccccCcCcCC
Confidence            568999999999999999999999999666    999999999999999999987 78899999999999999 478899


Q ss_pred             CCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCCCC-CCCCCCeEEEeeeEecC
Q 024387          192 VGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRT-DYPKVPCRIINSGELPL  266 (268)
Q Consensus       192 ~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td~~-~~P~~~I~I~~cGvL~~  266 (268)
                      +++|+|+|||.+|++++|||||++.++++||++|+|||+|++|||||++|++++++.+ ++|.++|+|.+|+++..
T Consensus       101 ~~~G~lsMAn~gp~sngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~~P~~~i~I~~~~v~~d  176 (197)
T 1zkc_A          101 TGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATTVFVD  176 (197)
T ss_dssp             CSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTTCCBSSCCEEEEEEEEEC
T ss_pred             CCceEEEEecCCCCCcccEEEEEcCCCCccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCcCCCeEEEEEEEEcC
Confidence            9999999999999999999999999999999999999999999999999999999987 99999999999999964

>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1

Probab=100.00  E-value=2.7e-46  Score=320.72  Aligned_cols=150  Identities=53%  Similarity=0.805  Sum_probs=141.5

Q ss_pred             EECCeeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCCCccccCCCCCCCcc-
Q 024387          109 DIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESF-  187 (268)
Q Consensus       109 ~i~~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~~de~~-  187 (268)
                      .+.+|++|+|+||||+++||++|+||++||+.|+    |+|+.||||+|+|||||||+. ++|.|+.++||..|++|.. 
T Consensus        24 v~~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~g~----Y~g~~FhRvi~~f~iQgGd~~-~~g~gg~si~g~~~~dE~~~   98 (176)
T 2a2n_A           24 AIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGY----YNGHTFHRIIKGFMIQTGDPT-GTGMGGESIWGGEFEDEFHS   98 (176)
T ss_dssp             EEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTT----TTTCBCCEEETTTEEEECCTT-SSSSCCCCTTSSCBCCCCCT
T ss_pred             EEEEecCccEEEEEeCCCChHHHHHHHHHhhcCc----cCCCEEEEEECCcEEEccCCC-CCCCCCCcccCCcccccccc
Confidence            3446788999999999999999999999999666    999999999999999999986 7889999999999999987 


Q ss_pred             ccccCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCC-CCCCCCCCeEEEeeeE
Q 024387          188 VLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETS-RTDYPKVPCRIINSGE  263 (268)
Q Consensus       188 ~l~h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td-~~~~P~~~I~I~~cGv  263 (268)
                      .++|.++|+|+||+.+|++++|||||++.+++|||++|+|||+|++|||||++|++++++ .+++|.++|+|.+|.+
T Consensus        99 ~l~h~~~G~lsmA~~gp~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~~P~~~v~I~~v~v  175 (176)
T 2a2n_A           99 TLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITV  175 (176)
T ss_dssp             TCCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTTCCBSSCCBEEEEEE
T ss_pred             ccccCCceEEEEEeCCCCCcccEEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHcCCccCCCCccCCCeEEEEEEE
Confidence            689999999999999999999999999999999999999999999999999999999998 7899999999999875

>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}

Probab=100.00  E-value=1.1e-45  Score=323.04  Aligned_cols=149  Identities=37%  Similarity=0.606  Sum_probs=136.0

Q ss_pred             eeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeC-----CCcCCCCCCCcccc-------CC
Q 024387          113 KPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGG-----DFTEGDGTGGISIY-------GS  180 (268)
Q Consensus       113 t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgG-----d~~~~~g~gg~s~~-------g~  180 (268)
                      |+.|+|+||||++.||+||+||++||+.|+    |+|+.||||+++||||||     |++ ++|.|+.++|       +.
T Consensus        13 T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~----Ydg~~FhRvi~~f~iQgG~~~~~Dp~-~~g~gg~si~~~~~~~~g~   87 (201)
T 3bo7_A           13 TTQGSLNIELHADMAPRACDSFLRLCAVKY----FDDTIFHRCIRNFMIQGGRAELRQPS-KKKEVQQSPRSISGFPGGA   87 (201)
T ss_dssp             ETTEEEEEEECTTTCHHHHHHHHHHHHTTT----TTTCBEEEEETTTEEEECCGGGCCC--------CCSSCCCSSTTCC
T ss_pred             eCCCCEEEEEcCCCCcHHHHHHHHHHhcCc----cCCCEEEEeeCCCEEEcCcccccCCC-CCCCCCccccccccccCCC
Confidence            668999999999999999999999999666    999999999999999999     986 7888999999       88


Q ss_pred             CCCCC-ccccccCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEE
Q 024387          181 SFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRII  259 (268)
Q Consensus       181 ~~~de-~~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td~~~~P~~~I~I~  259 (268)
                      .|++| +..++|+.+|+|+||+.+|++++|||||++.++++||++|+|||+|++|||||++|++++++.+++|.++|+|.
T Consensus        88 ~f~dE~~~~l~h~~~G~lsmA~~gp~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~i~I~  167 (201)
T 3bo7_A           88 PFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNNKHTIFGRVVGGLDVLRQWEKLETDKKDKPLKPPKVE  167 (201)
T ss_dssp             CBCCCCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHTTCCBCTTSCBSSCCBEE
T ss_pred             cccCcccCCCCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEecCHHHHHHHHhCCcCCCCCcCCCeEEE
Confidence            99999 47889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeEecC
Q 024387          260 NSGELPL  266 (268)
Q Consensus       260 ~cGvL~~  266 (268)
                      +|++|..
T Consensus       168 ~~~v~~d  174 (201)
T 3bo7_A          168 EIIVFKN  174 (201)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEcC
Confidence            9999964

>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens}

Probab=100.00  E-value=1.3e-45  Score=322.55  Aligned_cols=156  Identities=49%  Similarity=0.814  Sum_probs=146.0

Q ss_pred             cceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCCCccccCC
Q 024387          101 TTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGS  180 (268)
Q Consensus       101 ~~~v~fDi~i~~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~  180 (268)
                      +++|.|+     |++|+|+||||+++||++|+||++||+.|+    |+|+.||||+|+|||||||+. +++.++.++|+.
T Consensus        11 ~~~V~l~-----T~~G~I~ieL~~d~aP~tv~NF~~L~~~g~----Ydg~~FhRVi~~F~iQgGd~~-~~g~gg~si~g~   80 (203)
T 2k7n_A           11 PPNVYLE-----TSMGIIVLELYWKHAPKTCKNFAELARRGY----YNGTKFHRIIKDFMIQGGDPT-GTGRGGASIYGK   80 (203)
T ss_dssp             CSEEEEE-----ESSCEEEEEECTTTCTTHHHHHHHHHHHTC----GGGCEEEEEETTTEEEEECSS-SSSSCCCTTSCS
T ss_pred             CCEEEEE-----eCCCcEEEEEccCCCcHHHHHHHHHHhcCc----cCCCEEEEEeCCcEEEcCCCC-CCCCCCCccCCC
Confidence            4566664     457999999999999999999999999766    999999999999999999987 788899999999


Q ss_pred             CCCCCc-cccccCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEE
Q 024387          181 SFEDES-FVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRII  259 (268)
Q Consensus       181 ~~~de~-~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td~~~~P~~~I~I~  259 (268)
                      .|++|. ..++|.++|+|+|||.+||+++|||||++.++++||++|+|||+|++|||||++|++++++++++|.++|+|.
T Consensus        81 ~f~dE~~~~l~h~~~G~lsMAn~gpnsngSQFFIt~~~~~~LDg~~tVFG~VveGmdvv~kI~~~~t~~~~~P~~~V~I~  160 (203)
T 2k7n_A           81 QFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKII  160 (203)
T ss_dssp             CBCCCCCCSSCCCSSCEEEEEESSTTCEEEEEEEESSCCCSSTTTSCEEEEEESCHHHHHHHHSCCEEETTEECCCCBEE
T ss_pred             cccccccccccCCCCeEEEEeeCCCCCcccEEEEEcCCCCccCCCeeEEEEEEcCHHHHHHHHcCCcCCCCCcCCCeEEE
Confidence            999998 5899988999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeEecC
Q 024387          260 NSGELPL  266 (268)
Q Consensus       260 ~cGvL~~  266 (268)
                      +|++++.
T Consensus       161 ~~~v~~~  167 (203)
T 2k7n_A          161 KAYPSGG  167 (203)
T ss_dssp             EEEECCC
T ss_pred             EEEEEec
Confidence            9999864

>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1

Probab=100.00  E-value=5.9e-45  Score=316.01  Aligned_cols=147  Identities=48%  Similarity=0.747  Sum_probs=135.9

Q ss_pred             CeeeeeEEEEEcCCCChHHHHHHHHHHhcCCC-------------CcccCCCEEEEEEcCceeeeCCCcCCCCCCCcccc
Q 024387          112 GKPAGRIVMGLFGDVVPKTAENFRALCTAGEK-------------GYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIY  178 (268)
Q Consensus       112 ~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~k-------------g~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~  178 (268)
                      .|+.|+|+||||++.||+||+||++||+ |.+             ++ |+|+.||||+|+|||||||+. ++|+|+   +
T Consensus        29 ~t~~G~I~ieL~~~~aP~tv~NF~~L~t-G~~~~~~~~~g~~~~~~~-Y~g~~FhRVi~~fmiQgGd~~-g~G~gg---~  102 (191)
T 1w74_A           29 HTNRGDIKIALFGNHAPKTVANFVGLAQ-GTKDYSTQNASGGPSGPF-YDGAVFHRVIQGFMIQGGDPT-GTGRGG---P  102 (191)
T ss_dssp             EETTEEEEEEECTTTSHHHHHHHHHHHH-TCSCCSSCCTTBSSSSCS-STTEEEEEEETTTEEEECCTT-SSSSCC---S
T ss_pred             EecceeEEEEEcCCCChHHHHHHHHHhc-CCcccccccccccccCCc-cCCCEEEEEeCCCEEecCCCC-CCCCCC---C
Confidence            3678999999999999999999999996 322             34 999999999999999999975 677777   4


Q ss_pred             CCCCCCC-ccccccCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEc--CHHHHHHhhcCCCCCCCCCCCC
Q 024387          179 GSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVID--GMDVVRKLESVETSRTDYPKVP  255 (268)
Q Consensus       179 g~~~~de-~~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~Vve--GmdvL~~I~~~~td~~~~P~~~  255 (268)
                      |..|++| ++.++|.++|+|+|||.+|++++||||||+.+.+|||++|+|||+|++  |||||++|++++++.+++|.++
T Consensus       103 g~~f~dE~~~~l~h~~~G~lsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~~~Gmdvv~~I~~~~t~~~~~P~~~  182 (191)
T 1w74_A          103 GYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDP  182 (191)
T ss_dssp             SCCBCCCCCTTCCSCSSSEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEECSHHHHHHHHHHHTSCBCTTSCBSSC
T ss_pred             CCccccccccCCCcCCCcEEEEeeCCCCCccceEEEEcCCCcccCCCeeEEEEEEECCCHHHHHHHHcCCcCCCCCcCCC
Confidence            8889999 478999999999999999999999999999999999999999999999  9999999999999999999999


Q ss_pred             eEEEeeeEe
Q 024387          256 CRIINSGEL  264 (268)
Q Consensus       256 I~I~~cGvL  264 (268)
                      |+|.+|+++
T Consensus       183 v~I~~~~i~  191 (191)
T 1w74_A          183 VVIESITIS  191 (191)
T ss_dssp             CEEEEEEEC
T ss_pred             eEEEEEEEC
Confidence            999999985

>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens}

Probab=100.00  E-value=9.6e-45  Score=313.30  Aligned_cols=161  Identities=37%  Similarity=0.642  Sum_probs=147.4

Q ss_pred             cccccccceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCCC
Q 024387           95 ELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGG  174 (268)
Q Consensus        95 ~~~~~~~~~v~fDi~i~~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg  174 (268)
                      ...+..+.+|+|++     ++|+|+||||+++||++|+||++||+.|+    |+|+.||||+|+|||||||+. ++|.|+
T Consensus        18 ~~~~~~~~~V~l~T-----~~G~I~ieL~~~~aP~tv~NF~~L~~~g~----Y~g~~FhRvi~~f~iQgGd~~-~~g~gg   87 (185)
T 2hq6_A           18 GSEPPTNGKVLLKT-----TAGDIDIELWSKEAPKACRNFIQLCLEAY----YDNTIFHRVVPGFIVQGGDPT-GTGSGG   87 (185)
T ss_dssp             TCCCCCBCEEEEEE-----TTEEEEEEEBTTTCHHHHHHHHHHHHTTT----TTTEECCEEETTTEEEECCTT-SSSSCC
T ss_pred             ccCCCCCCEEEEEe-----CCccEEEEEeCCCCcHHHHHHHHHhhcCc----cCCCEEEEEECCCEEEcCCCC-CCCCCC
Confidence            34455677888865     46999999999999999999999999666    999999999999999999986 788999


Q ss_pred             ccccCCCCCCCcc-ccccCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHH--HHHhhcCCCCCCCC
Q 024387          175 ISIYGSSFEDESF-VLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDV--VRKLESVETSRTDY  251 (268)
Q Consensus       175 ~s~~g~~~~de~~-~l~h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdv--L~~I~~~~td~~~~  251 (268)
                      .++||..|++|.. .++|+++|+|+|||.++++++|||||++.++++||++|+|||+|+ ||++  +++|++++++++++
T Consensus        88 ~si~g~~~~dE~~~~l~h~~~G~lsMA~~g~~s~gSQFFIt~~~~~~LDg~~tVFG~V~-G~~v~~~~~i~~~~~~~~~~  166 (185)
T 2hq6_A           88 ESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVT-GDTVYNMLRLSEVDIDDDER  166 (185)
T ss_dssp             CCTTSSCBCCCCBTTBCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEC-GGGHHHHHHTTCSCBCTTSC
T ss_pred             CcccCCccccccccCcccCCCeEEEEccCCCCCccceEEEECCCCCccCCCceEEEEEE-eCeeehhhHHhhCCcCCCCC
Confidence            9999999999985 688989999999999999999999999999999999999999999 8876  47899999999999


Q ss_pred             CCCCeEEEeeeEecC
Q 024387          252 PKVPCRIINSGELPL  266 (268)
Q Consensus       252 P~~~I~I~~cGvL~~  266 (268)
                      |.++|+|.+|++|+.
T Consensus       167 P~~~v~I~~~~v~~~  181 (185)
T 2hq6_A          167 PHNPHKIKSCEVLFN  181 (185)
T ss_dssp             BSSCCEEEEEEEEEC
T ss_pred             CCCCeEEEEEEEeCC
Confidence            999999999999964

>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A

Probab=100.00  E-value=2.7e-44  Score=305.53  Aligned_cols=154  Identities=32%  Similarity=0.512  Sum_probs=136.4

Q ss_pred             ccceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCCCccccC
Q 024387          100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYG  179 (268)
Q Consensus       100 ~~~~v~fDi~i~~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g  179 (268)
                      -+++|+|+     |++|+|+||||+++||+||+||++||+.|+    |+|+.||||+|+|||||||++...+   ...++
T Consensus         3 ~~~~v~~~-----t~~G~i~ieL~~~~aP~t~~NF~~L~~~g~----Y~g~~FhRvi~~f~iQgGd~~~~~~---~~~~g   70 (166)
T 1v9t_A            3 GDPHVLLT-----TSAGNIELELDKQKAPVSVQNFVDYVNSGF----YNNTTFHRVIPGFMIQGGGFTEQMQ---QKKPN   70 (166)
T ss_dssp             CSCEEEEE-----ETTEEEEEEECTTTCHHHHHHHHHHHHTTT----TTTCBEEEEETTTEEEESSBCTTCC---BCCCC
T ss_pred             CCeEEEEE-----eCCccEEEEEcCCCCcHHHHHHHHHhccCC----CCCCEEEEEECCcEEEcCCcCcCCC---CCCCC
Confidence            35677776     678999999999999999999999999666    9999999999999999999875432   23357


Q ss_pred             CCCCCCccccccCCCeEEEEecC-CCCCCCccceEEecCCCCCCCC-----ceEEEEEEcCHHHHHHhhcCCCCC----C
Q 024387          180 SSFEDESFVLKHVGPGVLSMANA-GPNTNGSQFFICTVKTPWLDNR-----HVVFGHVIDGMDVVRKLESVETSR----T  249 (268)
Q Consensus       180 ~~~~de~~~l~h~~~G~lsma~~-gp~s~gSqFfItl~~~~~LDg~-----~~VFG~VveGmdvL~~I~~~~td~----~  249 (268)
                      .+|++|.....|+.+|+|+|||. +|++++|||||++.+.+|||++     |+|||+|++|||||++|++++++.    +
T Consensus        71 ~~~~dE~~~~l~~~~G~lsmA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~tvFG~Vv~G~dvv~~I~~~~~~~~~~~~  150 (166)
T 1v9t_A           71 PPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQ  150 (166)
T ss_dssp             CCBCCCGGGSCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSCCCCCEEEEEEECHHHHHHHHTSCEEEETTEE
T ss_pred             CcccccccccccCCceEEEEeecCCCCCccceEEEEeCCccccCCccCcCCeeEEEEEecCHHHHHHHHhCCCCCCCccC
Confidence            78999986655557999999996 6999999999999999999998     999999999999999999999986    5


Q ss_pred             CCCCCCeEEEeeeEec
Q 024387          250 DYPKVPCRIINSGELP  265 (268)
Q Consensus       250 ~~P~~~I~I~~cGvL~  265 (268)
                      ++|.++|+|.+|++++
T Consensus       151 ~~P~~~v~I~~~~v~~  166 (166)
T 1v9t_A          151 NVPSKPVVILSATVLP  166 (166)
T ss_dssp             EEESSCCBEEEEEECC
T ss_pred             CCcCCCeEEEEEEEeC
Confidence            7999999999999974

>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A

Probab=100.00  E-value=3.7e-44  Score=304.17  Aligned_cols=146  Identities=37%  Similarity=0.579  Sum_probs=133.0

Q ss_pred             CeeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCCCccccCCCCCCCccc-cc
Q 024387          112 GKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFV-LK  190 (268)
Q Consensus       112 ~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~~de~~~-l~  190 (268)
                      .|++|+|+||||+++||+||+||++||+.|+    |+|+.||||+|+|||||||++.+.   +.++++..|++|... ++
T Consensus         5 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~----Y~g~~FhRvi~~f~iQgGd~~~~~---g~~~~g~~~~dE~~~~l~   77 (164)
T 1lop_A            5 HTNHGDIVIKTFDDKAPETVKNFLDYCREGF----YNNTIFHRVINGFMIQGGGFEPGM---KQKATKEPIKNEANNGLK   77 (164)
T ss_dssp             EETTEEEEEEECTTTSHHHHHHHHHHHHTTT----TTTEECCEEETTTEEEESSEETTT---EECCCCCCBCCCCCSSCC
T ss_pred             EeCCCCEEEEEeCCCCcHHHHHHHHHHhcCC----CCCCEEEEEeCCceEecCCcccCC---CcCCCCCccccccccccc
Confidence            4778999999999999999999999999666    999999999999999999997543   355678999999864 66


Q ss_pred             cCCCeEEEEecC-CCCCCCccceEEecCCCCCCCC--------ceEEEEEEcCHHHHHHhhcCCCCC----CCCCCCCeE
Q 024387          191 HVGPGVLSMANA-GPNTNGSQFFICTVKTPWLDNR--------HVVFGHVIDGMDVVRKLESVETSR----TDYPKVPCR  257 (268)
Q Consensus       191 h~~~G~lsma~~-gp~s~gSqFfItl~~~~~LDg~--------~~VFG~VveGmdvL~~I~~~~td~----~~~P~~~I~  257 (268)
                      | .+|+|+||+. +|++++|||||++.+.++||++        |+|||+|++|||||++|++++++.    +++|.++|+
T Consensus        78 ~-~~G~lsmA~~~~p~s~gSQFfI~~~~~~~Ld~~~~~~~~~~~tvFG~Vv~G~dvv~~I~~~~t~~~~~~~~~P~~~v~  156 (164)
T 1lop_A           78 N-TRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVI  156 (164)
T ss_dssp             C-CTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTSCCCEEEEEEECHHHHHHHHTSCEEEETTEEEEESSCCE
T ss_pred             c-CccEEEEeecCCCCCccceEEEEcCCccccCCccccccCCceEEEEEEecCHHHHHHHHhCCcCCccccCCCcCCCeE
Confidence            6 6999999974 8999999999999999999998        999999999999999999999875    589999999


Q ss_pred             EEeeeEec
Q 024387          258 IINSGELP  265 (268)
Q Consensus       258 I~~cGvL~  265 (268)
                      |.+|++++
T Consensus       157 I~~~~v~~  164 (164)
T 1lop_A          157 IESVTVSE  164 (164)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEEeC
Confidence            99999985

>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=100.00  E-value=1.5e-43  Score=315.47  Aligned_cols=162  Identities=35%  Similarity=0.571  Sum_probs=145.6

Q ss_pred             ccccccccceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCC
Q 024387           94 VELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTG  173 (268)
Q Consensus        94 ~~~~~~~~~~v~fDi~i~~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~g  173 (268)
                      ....+..+.+|+|+.     ++|+|+||||++.||+||+||++||+.|+    |+|+.||||+++|||||||++ ++|+|
T Consensus        14 ~~~~p~~~~~V~l~T-----~~G~I~ieL~~d~aP~tv~NF~~L~~~g~----Ydgt~FhRVi~~FmiQgGdp~-~~G~G   83 (232)
T 3bkp_A           14 LYFQGSTRGKVVLHT-----SLGDLDVELWARECPLACRNFVQLCLEGY----YVNTIFHRVVKDFIVQGGDPT-GTGRG   83 (232)
T ss_dssp             GGCCCSCBCEEEEEE-----TTEEEEEEEBTTTCHHHHHHHHHHHHHTT----TTTCBEEEEETTTEEEECCTT-SSSSC
T ss_pred             ccccCCCCCEEEEEE-----CCCcEEEEEcCCCCcHHHHHHHHHhhcCc----cCCCEEEEEeCCCEEEcCCCC-CCCCC
Confidence            344555677887754     56999999999999999999999999776    999999999999999999987 78999


Q ss_pred             Ccccc--CCCCCCCcc-ccccCCCeEEEEecCCC--------------CCCCccceEEecCCCCCCCCceEEEEEEcCHH
Q 024387          174 GISIY--GSSFEDESF-VLKHVGPGVLSMANAGP--------------NTNGSQFFICTVKTPWLDNRHVVFGHVIDGMD  236 (268)
Q Consensus       174 g~s~~--g~~~~de~~-~l~h~~~G~lsma~~gp--------------~s~gSqFfItl~~~~~LDg~~~VFG~VveGmd  236 (268)
                      +.++|  |..|++|.. .++|+.+|+|+||+.++              ++++||||||+.+.++||++|+|||+|+ ||+
T Consensus        84 g~si~~~g~~f~dE~~~~l~h~~~G~lsMA~~g~~~~~~~n~e~g~~~~sngSQFFIt~~~~p~LDg~~tVFG~Vv-g~~  162 (232)
T 3bkp_A           84 GADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLARADVLNNAYTLFGKVT-GHT  162 (232)
T ss_dssp             CCCCTTTTCCBCCCCCTTCCCCSTTEEEECCCC----------------CBCSCEEEESSCCGGGTTTSCEEEEEC-GGG
T ss_pred             CCccccCCCccCCccccCcCcCCCeEEEEeccCCcccccccccccccCCCcCCEEEEECCCCcccCCCccEEEEEE-eCc
Confidence            99999  899999985 78899999999999987              6999999999999999999999999999 776


Q ss_pred             H--HHHhhcCCCCCCCCCCCCeEEEeeeEecC
Q 024387          237 V--VRKLESVETSRTDYPKVPCRIINSGELPL  266 (268)
Q Consensus       237 v--L~~I~~~~td~~~~P~~~I~I~~cGvL~~  266 (268)
                      |  |++|++++++.+++|.++|+|.+|++|..
T Consensus       163 v~~v~kI~~~~t~~~~~P~~~i~I~~~~vl~d  194 (232)
T 3bkp_A          163 LYNLMKFNDLEVGKEDRPMTPPFIKSVDVLWN  194 (232)
T ss_dssp             HHHHHHHTTSCBCGGGCBSSCCBEEEEEEEEC
T ss_pred             hHHHHHHHcCCcCCCCCcCCCeEEEEEEEEcC
Confidence            5  89999999999999999999999999963

>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} SCOP: b.62.1.1 PDB: 3t1u_A*

Probab=100.00  E-value=3.5e-43  Score=298.86  Aligned_cols=145  Identities=33%  Similarity=0.519  Sum_probs=130.7

Q ss_pred             CeeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCCCccccCCCCCCCcc-ccc
Q 024387          112 GKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESF-VLK  190 (268)
Q Consensus       112 ~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~~de~~-~l~  190 (268)
                      .|++|+|+||||++.||+||+||++||+.|+    |+|+.|||++++|||||||++...+   ...++..+++|.. .++
T Consensus         9 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~----Y~g~~FhRvi~~f~iQgGd~~~~~~---~~~~~~~~~~E~~~~l~   81 (167)
T 3s6m_A            9 HTNHGVIKLELDEAKAPKTVENFLNYVKKGH----YDGTIFHRVINGFMIQGGGFEPGLK---QKPTDAPIANEANNGLK   81 (167)
T ss_dssp             EETTEEEEEEECTTTCHHHHHHHHHHHHHTT----TTTEECCEEETTTEEEESSEETTTE---ECCCCCCBCCCGGGCCC
T ss_pred             EeCCceEEEEEeCCCCcHHHHHHHHHhhhcc----cCCCEeEEecCCcEEEeccccCCCC---CCCCCCccCCccccccc
Confidence            3788999999999999999999999999776    9999999999999999999875432   2345777888864 455


Q ss_pred             cCCCeEEEEec-CCCCCCCccceEEecCCCCCCCC--------ceEEEEEEcCHHHHHHhhcCCCCC----CCCCCCCeE
Q 024387          191 HVGPGVLSMAN-AGPNTNGSQFFICTVKTPWLDNR--------HVVFGHVIDGMDVVRKLESVETSR----TDYPKVPCR  257 (268)
Q Consensus       191 h~~~G~lsma~-~gp~s~gSqFfItl~~~~~LDg~--------~~VFG~VveGmdvL~~I~~~~td~----~~~P~~~I~  257 (268)
                      | .+|+|+||| .+|++++|||||++.+.+|||++        |+|||+|++|||||++|++++++.    +++|.++|+
T Consensus        82 ~-~~G~lsmA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~~~~~VFG~Vv~G~dvv~~I~~~~t~~~~~~~~~P~~~v~  160 (167)
T 3s6m_A           82 N-DTYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGWGYAVFGKVVEGQDIVDKIKAVKTGSKGFHQDVPNDDVV  160 (167)
T ss_dssp             C-CTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTCCCCEEEEEEECHHHHHHHTTSCBBC---CBTCBSSCCE
T ss_pred             C-CccEEEEecCCCCCCccceEEEEcCCchhcCCcccccCCCCceEEEEEEcCHHHHHHHHcCCcCCCcccCCCcCCCeE
Confidence            5 799999999 68999999999999999999998        999999999999999999999987    689999999


Q ss_pred             EEeeeEe
Q 024387          258 IINSGEL  264 (268)
Q Consensus       258 I~~cGvL  264 (268)
                      |.+|.+|
T Consensus       161 I~~~~il  167 (167)
T 3s6m_A          161 IEKAVVV  167 (167)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEC
Confidence            9999886

>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}

Probab=100.00  E-value=1.1e-36  Score=286.33  Aligned_cols=141  Identities=28%  Similarity=0.383  Sum_probs=120.5

Q ss_pred             ccccceEEEEEEEC--C---eeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCC
Q 024387           98 AKVTTKVFFDVDIG--G---KPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGT  172 (268)
Q Consensus        98 ~~~~~~v~fDi~i~--~---t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~  172 (268)
                      |..+.++++++.+.  +   +..|+|+||||++.||+||+||++||+.|+    |+|+.|||+ ++|||||||++ ++|+
T Consensus       165 P~l~gra~V~m~t~~~~~~~~~~G~I~IeL~~d~AP~Tv~NFl~L~~~Gf----YdGt~FHRV-~gFmIQgGDp~-g~G~  238 (369)
T 3rfy_A          165 PLLKGRASVDMKVKIKDNPNIEDCVFRIVLDGYNAPVTAGNFVDLVERHF----YDGMEIQRS-DGFVVQTGDPE-GPAE  238 (369)
T ss_dssp             CEECSEEEEEEEEECCSCSSCSEEEEEEEEETTTCHHHHHHHHHHHHTTT----TTTEECEEE-EEEEECCCCCC-CCCS
T ss_pred             ccCCCCeEEEEEEeccCCCcccceEEEEEEeCCCCcHHHHHHHHHhhcCC----cCCCeeeee-CCeeEecCCCC-CCCC
Confidence            34455555555553  2   468999999999999999999999999666    999999999 99999999997 5555


Q ss_pred             C---------------------CccccCCCCCCCcc-----ccccCCCeEEEEecC--CCCCCCccceEEec-------C
Q 024387          173 G---------------------GISIYGSSFEDESF-----VLKHVGPGVLSMANA--GPNTNGSQFFICTV-------K  217 (268)
Q Consensus       173 g---------------------g~s~~g~~~~de~~-----~l~h~~~G~lsma~~--gp~s~gSqFfItl~-------~  217 (268)
                      |                     +.++|+..|++|++     .++|+.+|+|+|||.  +||+++|||||++.       +
T Consensus       239 G~~~~~~g~~~~iP~E~~~~G~g~piyg~~fedegf~~~~~~L~h~~~G~LsMAns~~gPnSngSQFFItl~d~~L~~~~  318 (369)
T 3rfy_A          239 GFIDPSTEKTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMAREEFENDSGSSQVFWLLKESELTPSN  318 (369)
T ss_dssp             CCCSCCCCCCCSSSSSSCSSSSCCSCCCSSTGGGTEEEEEEEECCCCCCCCCCSSCCCCCCCSSCCCCCCCEEEEECSCC
T ss_pred             CccCcccCcCcccCccccccCCCCCcCCCccccccccccccccccCCCceEEEeecCCCCCCccceEEEEecccccCCCC
Confidence            5                     35677878888754     678889999999997  89999999999994       6


Q ss_pred             CCCCCCCceEEEEEEcCHHHHHHhhcC
Q 024387          218 TPWLDNRHVVFGHVIDGMDVVRKLESV  244 (268)
Q Consensus       218 ~~~LDg~~~VFG~VveGmdvL~~I~~~  244 (268)
                      .+|||++|+|||+|++|||||++|++.
T Consensus       319 ~~~LDgkytVFG~VveGmdVVdkI~~G  345 (369)
T 3rfy_A          319 SNILDGRYAVFGYVTDNEDFLADLKVG  345 (369)
T ss_dssp             CSSSCSCEEEEEEEEESTTGGGGCCTT
T ss_pred             CcccCCCeeEEEEEecCHHHHHHHhCC
Confidence            899999999999999999999999884

>3kop_A Uncharacterized protein; protein with A cyclophilin-like fold, structural genomics, J center for structural genomics, JCSG; 1.90A {Arthrobacter SP}

Probab=94.50  E-value=0.17  Score=42.82  Aligned_cols=33  Identities=18%  Similarity=0.354  Sum_probs=26.0

Q ss_pred             EEEEEECCeeee-eEEEEEcCCCChHHHHHHHHHHh
Q 024387          105 FFDVDIGGKPAG-RIVMGLFGDVVPKTAENFRALCT  139 (268)
Q Consensus       105 ~fDi~i~~t~~G-rIvIeL~~d~aP~tv~nF~~Lc~  139 (268)
                      |+.|++..  .| .++.+|..+.||+||+.|+++--
T Consensus        23 ~i~itl~~--~g~~~~A~Lldd~APkTcaA~~~~LP   56 (188)
T 3kop_A           23 YINITLEK--RGVTCKALLLDDVAPRTSKAVWDALP   56 (188)
T ss_dssp             EEEEEETT--TTEEEEEEECTTTSHHHHHHHHHHCC
T ss_pred             EEEEEEec--CCeEEEEEEccccChHHHHHHHHhCC
Confidence            56677642  34 38899999999999999999754

>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus}

Probab=90.95  E-value=0.24  Score=40.80  Aligned_cols=105  Identities=18%  Similarity=0.187  Sum_probs=59.4

Q ss_pred             EEEECCeeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCCCccccCCCCCCCc
Q 024387          107 DVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDES  186 (268)
Q Consensus       107 Di~i~~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~~de~  186 (268)
                      .|.+++   ..++++|+.+.||+||+.|+++.=       +... +.+. .+- +-+ +...          .-..+ |+
T Consensus        33 ~i~~~~---~~~~a~L~D~~aP~Ta~~f~~~LP-------l~~~-~~~~-g~E-~y~-~lp~----------~l~~~-en   87 (153)
T 2nnz_A           33 RIRFES---AECEVELYEEWAPETVRAIADALP-------IKST-ANRW-GDE-IYF-TTQV----------AVEKE-EN   87 (153)
T ss_dssp             EEEETT---EEEEECCCTTSCHHHHHHHHHTCS-------EEEE-EEEE-TTE-EEE-CCSC----------CCCCS-SC
T ss_pred             EEEECC---EEEEEEEcCCCCHHHHHHHHHhCC-------cEEE-HHhh-CCc-EEE-ECCC----------CCCCC-CC
Confidence            455665   669999999999999999999754       2221 1121 110 000 1110          00111 22


Q ss_pred             cccccCCCeEEEEecCCCCCCCccceEEecCCCCCCC------CceEEEEEEcCHHHHHHhh
Q 024387          187 FVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDN------RHVVFGHVIDGMDVVRKLE  242 (268)
Q Consensus       187 ~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg------~~~VFG~VveGmdvL~~I~  242 (268)
                      . .....+|-|++-..+.     .+.|-.++.+...+      .-.+||+|++|++.|.++.
T Consensus        88 ~-~~~~~~GDI~Yy~pg~-----~LaIFYg~~p~s~~e~~~as~~~~lG~I~~gle~L~~~~  143 (153)
T 2nnz_A           88 S-KDVVELGDVAYWIPGK-----AICLFFGKTPISDDKIRPASAVNVIGRIVNSMEGLKGVA  143 (153)
T ss_dssp             C-BCCCCTTEEEEETTTT-----EEEEESSCCTTCTTSCCCCSSEEEEEECCSCCCCGGGCC
T ss_pred             C-cccCCCCeEEEeCCCC-----EEEEEECCccccccccccccccEEEEEEccCHHHHhhCC
Confidence            2 2334678888765432     26666666543222      2588999999988776653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	268
d1a33a_	174	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (	2e-62
d2cfea1	162	b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s	2e-61
d2rmca_	182	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus	2e-61
d1h0pa_	182	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabd	4e-60
d1qnga_	170	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium	2e-58
d2igva1	172	b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caeno	2e-57
d2z6wa1	164	b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl c	4e-56
d1xo7a_	166	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosom	5e-56
d1ihga2	195	b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain	2e-55
d1qoia_	173	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Hom	2e-54
d2c3ba1	171	b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Asper	1e-52
d2r99a1	161	b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl	9e-52
d1z81a1	186	b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plas	9e-50
d1zkca1	178	b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans iso	2e-49
d1xwna1	166	b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isome	3e-48
d2ok3a1	159	b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B	6e-40
d1w74a_	171	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	3e-39
d2b71a1	169	b.62.1.1 (A:23-191) Cyclophilin-like protein PY006	2e-37
d2a2na1	164	b.62.1.1 (A:483-646) Peptidylprolyl isomerase doma	2e-36
d2fu0a1	155	b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {	2e-36
d1lopa_	164	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	1e-30
d1v9ta_	166	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	2e-30

>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]} Length = 174

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]

 Score =  192 bits (488), Expect = 2e-62
 Identities = 96/173 (55%), Positives = 116/173 (67%), Gaps = 7/173 (4%)

Query: 99  KVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGE-------KGYGYKGCS 151
           K   +VF DV I G  AGRIVM L+ D+ P+T  NF  LCT          K   YKG +
Sbjct: 1   KDRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGST 60

Query: 152 FHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQF 211
           FHR+IK+FMIQGGDFT+GDGTGG SIYG  F+DE FV+KH  P V+SMAN GPNTNGSQF
Sbjct: 61  FHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQF 120

Query: 212 FICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
           FI T   P L+N HVVFG V+ G +VV K+E ++T+  + P     I+N GEL
Sbjct: 121 FITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGEL 173

>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]} Length = 162

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]

 Score =  189 bits (481), Expect = 2e-61
 Identities = 101/161 (62%), Positives = 118/161 (73%), Gaps = 2/161 (1%)

Query: 102 TKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMI 161
           + VFFD+   G P G I   LF DVVPKTA NFRALCT GEKG+GY G  FHR+I DFM+
Sbjct: 2   SNVFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCT-GEKGFGYAGSHFHRVIPDFML 60

Query: 162 QGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWL 221
           QGGDFT G+GTGG SIYG+ F DE+F LKH  PG+LSMANAGPNTNGSQFFI TV T WL
Sbjct: 61  QGGDFTAGNGTGGKSIYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFITTVVTSWL 120

Query: 222 DNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSG 262
           D +HVVFG VIDGM+VV+ +E+  +  +  P+    I   G
Sbjct: 121 DGKHVVFGEVIDGMNVVKAIEAEGS-GSGKPRSRIEIAKCG 160

>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]} Length = 182

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]

 Score =  189 bits (481), Expect = 2e-61
 Identities = 111/169 (65%), Positives = 126/169 (74%), Gaps = 1/169 (0%)

Query: 99  KVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKD 158
            VT KVFFDV IG K  GRIV+GLFG+VVPKT ENF AL T GEKGYGYKG  FHR+IKD
Sbjct: 5   SVTDKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALAT-GEKGYGYKGSIFHRVIKD 63

Query: 159 FMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKT 218
           FMIQGGDFT  DGTGG+SIYG +F DE+F LKH G G +SMANAGP+TNGSQFFI   K 
Sbjct: 64  FMIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKP 123

Query: 219 PWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLD 267
            WLD +HVVFG V+DGM VV  +E   T   D P   C I+NSG++ + 
Sbjct: 124 TWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTIVNSGKIDVK 172

>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]} Length = 182

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]

 Score =  186 bits (473), Expect = 4e-60
 Identities = 110/169 (65%), Positives = 124/169 (73%), Gaps = 1/169 (0%)

Query: 99  KVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKD 158
           KVT +V+FD++IGGKP GRIV+GLFG  VPKTA NF  L     KG GY G  FHR+I D
Sbjct: 4   KVTDRVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAK-KPKGEGYPGSKFHRVIAD 62

Query: 159 FMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKT 218
           FMIQGGDFT GDGTGG SIYG  F DE+F LKH G G LSMANAG +TNGSQFFI TVKT
Sbjct: 63  FMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTVKT 122

Query: 219 PWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLD 267
           PWLD RHVVFG +++GMDVVRK+E  E    D PK    I  SG + +D
Sbjct: 123 PWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHIAVD 171

>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]} Length = 170

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]

 Score =  181 bits (461), Expect = 2e-58
 Identities = 95/168 (56%), Positives = 114/168 (67%), Gaps = 6/168 (3%)

Query: 102 TKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGE-----KGYGYKGCSFHRII 156
           +KVFFD+ I    AGRI+  LF D+ P+T ENFRALCT  +     K   YK   FHRII
Sbjct: 4   SKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRII 63

Query: 157 KDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTV 216
             FM QGGD T G+G+GG SIYG SF DE+F +KH  PG+LSMANAGPNTN SQFFI  V
Sbjct: 64  PQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLV 123

Query: 217 KTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
             PWLD +HVVFG VI+GM+VVR++E     ++ Y K    I + GEL
Sbjct: 124 PCPWLDGKHVVFGKVIEGMNVVREMEKEGA-KSGYVKRSVVITDCGEL 170

>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]} Length = 172

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]

 Score =  179 bits (454), Expect = 2e-57
 Identities = 106/171 (61%), Positives = 126/171 (73%), Gaps = 7/171 (4%)

Query: 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGE------KGYGYKGCSFH 153
             +KVFFD+ IGGK +GRIVM L+ DVVPKTA NFRALCT         K   +KG  FH
Sbjct: 2   SRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFH 61

Query: 154 RIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFI 213
           RII +FMIQGGDFT G+GTGG SIYG  F DE+F  KH GPGVLSMANAGPNTNGSQFF+
Sbjct: 62  RIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFL 121

Query: 214 CTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
           CTVKT WLD +HVVFG V++G+DVV+ +ES  + ++  P   C I + G+L
Sbjct: 122 CTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGS-QSGKPVKDCMIADCGQL 171

>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  175 bits (445), Expect = 4e-56
 Identities = 109/162 (67%), Positives = 127/162 (78%), Gaps = 2/162 (1%)

Query: 103 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQ 162
            V+ DVD  GKP GR+V+ L  DVVPKTAENFRALCT GEKG+GYKG +FHR+I  FM Q
Sbjct: 4   LVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCT-GEKGFGYKGSTFHRVIPSFMCQ 62

Query: 163 GGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLD 222
            GDFT  +GTGG SIYGS F DE+F LKHVGPGVLSMANAGPNTNGSQFFICT+KT WLD
Sbjct: 63  AGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLD 122

Query: 223 NRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
            +HVVFGHVI+GMDVV+K+ES  + ++        I + G+L
Sbjct: 123 GKHVVFGHVIEGMDVVKKIESFGS-KSGRTSKKIVITDCGQL 163

>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]

 Score =  175 bits (444), Expect = 5e-56
 Identities = 100/166 (60%), Positives = 127/166 (76%), Gaps = 2/166 (1%)

Query: 99  KVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKD 158
            VT KV+FD+ IG +P GR+V+GLFG+ VPKT ENF+ L + GE G+GYKG  FHR+I++
Sbjct: 3   VVTDKVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLAS-GENGFGYKGSIFHRVIRN 61

Query: 159 FMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKT 218
           FMIQGGDFT  DGTGG SIYG+ F+DE+  +KH   G +SMANAGPN+NGSQFF+ T  T
Sbjct: 62  FMIQGGDFTNFDGTGGKSIYGTRFDDENLKIKHF-VGAVSMANAGPNSNGSQFFVTTAPT 120

Query: 219 PWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
           PWLD RHVVFG V++GMDVV+K+E+ +T   D PK   +I + G L
Sbjct: 121 PWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKINDCGVL 166

>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]} Length = 195

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  175 bits (443), Expect = 2e-55
 Identities = 105/170 (61%), Positives = 120/170 (70%), Gaps = 8/170 (4%)

Query: 103 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGE-------KGYGYKGCSFHRI 155
           +VFFDVDIGG+  GRIV+ LF D+VPKTAENFRALCT  +       K   +KGC FHRI
Sbjct: 16  RVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRI 75

Query: 156 IKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICT 215
           IK FMIQGGDF+  +GTGG SIYG  FEDE+F  KH   G+LSMANAG NTNGSQFFI T
Sbjct: 76  IKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITT 135

Query: 216 VKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELP 265
           V TP LD +HVVFG VI GM V + LE+VE  + + P   C I   GEL 
Sbjct: 136 VPTPHLDGKHVVFGQVIKGMGVAKILENVEV-KGEKPAKLCVIAECGELK 184

>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]} Length = 173

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]

 Score =  171 bits (435), Expect = 2e-54
 Identities = 98/171 (57%), Positives = 118/171 (69%), Gaps = 4/171 (2%)

Query: 98  AKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGE----KGYGYKGCSFH 153
           + V   VFFDV IGG+  GR+ + LF DVVPKTAENFR  CT          GYKG +FH
Sbjct: 3   SPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFH 62

Query: 154 RIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFI 213
           R+IKDFMIQGGDF  GDGTG  SIY   F DE+F L+H  PG+LSMAN+GP+TNG QFFI
Sbjct: 63  RVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFI 122

Query: 214 CTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
              K  WLD +HVVFG +IDG+ V+RK+E+V T   + PK+P  I   GE+
Sbjct: 123 TCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 173

>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]} Length = 171

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]

 Score =  166 bits (422), Expect = 1e-52
 Identities = 92/171 (53%), Positives = 112/171 (65%), Gaps = 9/171 (5%)

Query: 102 TKVFFDVD-----IGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRII 156
           ++VFFDV+           GRIV  LF   VPKTA+NFR LC     G GY+  +FHRII
Sbjct: 2   SQVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCK-RPAGEGYRESTFHRII 60

Query: 157 KDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTV 216
            +FMIQGGDFT G+GTGG SIYG  F DE+F  KH   G+LSMANAGPNTNGSQFFI T 
Sbjct: 61  PNFMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTA 120

Query: 217 KTPWLDNRHVVFGHVID--GMDVVRKLESVET-SRTDYPKVPCRIINSGEL 264
            T WLD +HVVFG V D     VV+++E++ + S +       +I+N GEL
Sbjct: 121 VTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGEL 171

>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  164 bits (416), Expect = 9e-52
 Identities = 100/161 (62%), Positives = 121/161 (75%), Gaps = 2/161 (1%)

Query: 103 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQ 162
           +V+ D+ IG KPAGRI M L  DVVP TAENFR LCT  EKG+G+KG SFHRII  FM Q
Sbjct: 3   QVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCT-HEKGFGFKGSSFHRIIPQFMCQ 61

Query: 163 GGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLD 222
           GGDFT  +GTGG SIYG  F+DE+F+LKH GPG+LSMAN+GPNTNGSQFF+   KT WLD
Sbjct: 62  GGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLD 121

Query: 223 NRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGE 263
            +HVVFG V +G+DV+R++E+   S+   PK    I + GE
Sbjct: 122 GKHVVFGEVTEGLDVLRQIEAQ-GSKDGKPKQKVIIADCGE 161

>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]} Length = 186

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]

 Score =  160 bits (405), Expect = 9e-50
 Identities = 81/169 (47%), Positives = 110/169 (65%), Gaps = 7/169 (4%)

Query: 103 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAG----EKGYGYKGCSFHRIIKD 158
            VF D+++G    G+    LF ++VPKT+ENFR  CT          GYK   FHR+IK+
Sbjct: 18  VVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKE 77

Query: 159 FMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKT 218
           FMIQGGDF   +G+G +SIYG  F+DE+F +KH   G+LSMAN+GPNTNG QFFI T K 
Sbjct: 78  FMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKC 137

Query: 219 PWLDNRHVVFGHVIDG--MDVVRKLESVET-SRTDYPKVPCRIINSGEL 264
            WLD ++VVFG +ID   + +++K+E+V        PK+P  ++  GEL
Sbjct: 138 EWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGEL 186

>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]} Length = 178

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  159 bits (402), Expect = 2e-49
 Identities = 71/147 (48%), Positives = 92/147 (62%), Gaps = 7/147 (4%)

Query: 116 GRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGI 175
           G + + L  D+ PKT ENF  LC    K + Y G  FHR I++F+IQGGD T G GTGG 
Sbjct: 10  GDLNLELHCDLTPKTCENFIRLC----KKHYYDGTIFHRSIRNFVIQGGDPT-GTGTGGE 64

Query: 176 SIYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDG 234
           S +G  F+DE    L H G G+LSMAN+GPN+N SQFFI      +LD +H +FG V+ G
Sbjct: 65  SYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGG 124

Query: 235 MDVVRKLESVET-SRTDYPKVPCRIIN 260
            DV+  +E+VE+  +TD PK   RI  
Sbjct: 125 FDVLTAMENVESDPKTDRPKEEIRIDA 151

>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  155 bits (393), Expect = 3e-48
 Identities = 76/160 (47%), Positives = 95/160 (59%), Gaps = 11/160 (6%)

Query: 103 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQ 162
            V+ +  +G      IV+ L+    PKT +NF  L   G     Y G  FHRIIKDFMIQ
Sbjct: 13  NVYLETSMG-----IIVLELYWKHAPKTCKNFAELARRGY----YNGTKFHRIIKDFMIQ 63

Query: 163 GGDFTEGDGTGGISIYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWL 221
           GGD T G G GG SIYG  FEDE    LK  G G+L+MANAGP+TNGSQFF+    T WL
Sbjct: 64  GGDPT-GTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWL 122

Query: 222 DNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINS 261
           D +H +FG V  G+ +V ++  VET+  D P    +II +
Sbjct: 123 DGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKA 162

>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  134 bits (337), Expect = 6e-40
 Identities = 64/146 (43%), Positives = 80/146 (54%), Gaps = 5/146 (3%)

Query: 116 GRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGI 175
           G I + +F +  PKT ENF ALC        Y GC FHR IK FM+Q GD T     G  
Sbjct: 10  GDIKIEVFCERTPKTCENFLALC----ASNYYNGCIFHRNIKGFMVQTGDPTGTGRGGNS 65

Query: 176 SIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGM 235
                  ++ S  LKH   GV+SMAN GPNTNGSQFFI   K P LD ++ VFG VIDG+
Sbjct: 66  IWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGL 125

Query: 236 DVVRKLESVET-SRTDYPKVPCRIIN 260
           + + +LE +    +T  P     I +
Sbjct: 126 ETLDELEKLPVNEKTYRPLNDVHIKD 151

>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 171

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  132 bits (333), Expect = 3e-39
 Identities = 65/158 (41%), Positives = 78/158 (49%), Gaps = 16/158 (10%)

Query: 116 GRIVMGLFGDVVPKTAENFRALCTAG-----------EKGYGYKGCSFHRIIKDFMIQGG 164
           G I + LFG+  PKT  NF  L                 G  Y G  FHR+I+ FMIQGG
Sbjct: 13  GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGG 72

Query: 165 DFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNR 224
           D T G G GG        ++    L+   P +L+MANAGP TNGSQFFI   KTP L+ R
Sbjct: 73  DPT-GTGRGGPGYK--FADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRR 129

Query: 225 HVVFGHVID--GMDVVRKLESVETSRTDYPKVPCRIIN 260
           H +FG VID     VV  +    T   D P  P  I +
Sbjct: 130 HTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIES 167

>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]} Length = 169

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]

 Score =  128 bits (321), Expect = 2e-37
 Identities = 55/147 (37%), Positives = 75/147 (51%), Gaps = 4/147 (2%)

Query: 116 GRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGI 175
           G   + L+    PKT  NF  LC  G     Y    FHR+I +F+IQGGD T     G  
Sbjct: 26  GDFEVELYWYHSPKTCLNFYTLCEMGF----YDNTIFHRVIPNFVIQGGDPTGTGKGGKS 81

Query: 176 SIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGM 235
                  ++ +  LKH G G+LSM+N GPNTN SQFFI     P LD +H +F  V   M
Sbjct: 82  IYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNM 141

Query: 236 DVVRKLESVETSRTDYPKVPCRIINSG 262
             +  + SV+T+ T+ P    +I+ + 
Sbjct: 142 TCIENIASVQTTATNKPIFDLKILRTS 168

>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (314), Expect = 2e-36
 Identities = 72/159 (45%), Positives = 85/159 (53%), Gaps = 5/159 (3%)

Query: 103 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQ 162
           K   D  I     G I   LF    PKT ENF        +   Y G +FHRIIK FMIQ
Sbjct: 6   KRVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHS----RNGYYNGHTFHRIIKGFMIQ 61

Query: 163 GGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLD 222
            GD T     G     G   ++    L+H  P  LSMANAG NTNGSQFFI  V TPWLD
Sbjct: 62  TGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLD 121

Query: 223 NRHVVFGHVIDGMDVVRKLESVET-SRTDYPKVPCRIIN 260
           N+H VFG V  GM+VV+++ +V+   +TD P     IIN
Sbjct: 122 NKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIIN 160

>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]} Length = 155

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]

 Score =  124 bits (312), Expect = 2e-36
 Identities = 73/146 (50%), Positives = 88/146 (60%), Gaps = 6/146 (4%)

Query: 116 GRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGI 175
           G I + LF     KT +NF      G     Y  C FHR+IK FM+Q GD + GDGTGG 
Sbjct: 11  GDIHISLFYKECKKTVQNFSVHSINGY----YNNCIFHRVIKHFMVQTGDPS-GDGTGGE 65

Query: 176 SIYGSSFEDESF-VLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDG 234
           SI+G+ FEDE F  L H  P ++SMAN GPNTNGSQFFI TV  PWLD +H VFG V  G
Sbjct: 66  SIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQG 125

Query: 235 MDVVRKLESVETSRTDYPKVPCRIIN 260
             +V  +E V T + D P    +I+N
Sbjct: 126 SKIVLDIEKVRTDKRDKPLEDIKILN 151

>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

 Score =  110 bits (275), Expect = 1e-30
 Identities = 49/159 (30%), Positives = 66/159 (41%), Gaps = 20/159 (12%)

Query: 115 AGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGG 174
            G IV+  F D  P+T +NF   C  G     Y    FHR+I  FMIQGG F  G     
Sbjct: 8   HGDIVIKTFDDKAPETVKNFLDYCREGF----YNNTIFHRVINGFMIQGGGFEPGMKQK- 62

Query: 175 ISIYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVK--------TPWLDNRH 225
                   ++E +  LK+    +       P++  +QFFI  V                +
Sbjct: 63  --ATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGY 120

Query: 226 VVFGHVIDGMDVVRKLESVETSR----TDYPKVPCRIIN 260
            VF  V+DGMD V K++ V T R     D PK    I +
Sbjct: 121 CVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVIIES 159

>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

 Score =  110 bits (274), Expect = 2e-30
 Identities = 51/177 (28%), Positives = 73/177 (41%), Gaps = 20/177 (11%)

Query: 98  AKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIK 157
           AK    V          AG I + L     P + +NF     +G     Y   +FHR+I 
Sbjct: 1   AKGDPHVLLTTS-----AGNIELELDKQKAPVSVQNFVDYVNSGF----YNNTTFHRVIP 51

Query: 158 DFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVK 217
            FMIQGG FTE       +    +  D    L++    +     A  ++  SQFFI    
Sbjct: 52  GFMIQGGGFTEQMQQKKPNPPIKNEADNG--LRNTRGTIAMARTADKDSATSQFFINVAD 109

Query: 218 TPWLDNR-----HVVFGHVIDGMDVVRKLESVET----SRTDYPKVPCRIINSGELP 265
             +LD+      + VFG V+ GMDV  K+  V T       + P  P  I+++  LP
Sbjct: 110 NAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSATVLP 166

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	268
d1h0pa_	182	Cyclophilin (eukaryotic) {Caenorhabditis elegans,	100.0
d2rmca_	182	Cyclophilin (eukaryotic) {Mouse (Mus musculus), va	100.0
d1xo7a_	166	Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId	100.0
d2z6wa1	164	Mitochondrial peptidyl-prolyl cis-trans isomerase,	100.0
d2r99a1	161	Mitochondrial peptidyl-prolyl cis-trans isomerase,	100.0
d1qoia_	173	Cyclophilin (eukaryotic) {Human (Homo sapiens), U4	100.0
d2igva1	172	Cyclophilin (eukaryotic) {Caenorhabditis elegans,	100.0
d1qnga_	170	Cyclophilin (eukaryotic) {Plasmodium falciparum [T	100.0
d2cfea1	162	Cyclophilin-like allergen Mal s 6 {Malassezia symp	100.0
d1a33a_	174	Cyclophilin (eukaryotic) {Nematode (Brugia malayi)	100.0
d1ihga2	195	Cyclophilin 40 isomerase domain {Cow (Bos taurus)	100.0
d1z81a1	186	Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId	100.0
d2c3ba1	171	Cyclophilin (eukaryotic) {Aspergillus fumigatus [T	100.0
d2ok3a1	159	Cyclophilin-like protein PPIL3B {Human (Homo sapie	100.0
d1zkca1	178	Peptidyl-prolyl cis-trans isomerase-like 2, Cyclop	100.0
d2fu0a1	155	Putative cyclophilin PFE0505w {Plasmodium falcipar	100.0
d1xwna1	166	Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1	100.0
d2b71a1	169	Cyclophilin-like protein PY00693 {Plasmodium yoeli	100.0
d1v9ta_	166	Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche	100.0
d2a2na1	164	Peptidylprolyl isomerase domain and WD repeat-cont	100.0
d1w74a_	171	Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycob	100.0
d1lopa_	164	Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche	100.0

>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]

Probab=100.00  E-value=1.2e-47  Score=327.61  Aligned_cols=170  Identities=63%  Similarity=1.044  Sum_probs=160.6

Q ss_pred             cccccceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCCCcc
Q 024387           97 QAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGIS  176 (268)
Q Consensus        97 ~~~~~~~v~fDi~i~~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s  176 (268)
                      .|++|++|||||+++++++|+|+||||.+.||++|+||++||+.+..++ |+|+.|||++++|++|+|+...+++.++..
T Consensus         2 ~p~~t~~vy~di~i~~~~~G~i~IeL~~d~aP~tv~nF~~l~~~g~~~~-y~g~~f~rv~~~~~iq~G~~~~~~~~g~~~   80 (182)
T d1h0pa_           2 GPKVTDRVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEG-YPGSKFHRVIADFMIQGGDFTRGDGTGGRS   80 (182)
T ss_dssp             CCEEEEEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHSCTTTS-STTCBCCEEETTTEEEECCTTTSSSSCCCB
T ss_pred             cCCCCCeEEEEEEECCEECeEEEEEECCCCChHHHHHHHHHHHhcccCC-cCCceEEEEEecceEEcCCCCCCCCCCCCC
Confidence            3778999999999999999999999999999999999999998543334 999999999999999999999889999999


Q ss_pred             ccCCCCCCCccccccCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCCCCCCCCCCe
Q 024387          177 IYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPC  256 (268)
Q Consensus       177 ~~g~~~~de~~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td~~~~P~~~I  256 (268)
                      .++..+.++.....|..+|+++|++.++++++|||||++.+.++||++|+|||+|++|||+|++|++.+++++++|.++|
T Consensus        81 ~~~~~~~~~~~~~~~~~~G~~~~a~~g~~s~~sqFfIt~~~~~~ldg~ytvFG~Vi~G~dvl~~I~~~~~~~~~~P~~~v  160 (182)
T d1h0pa_          81 IYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDV  160 (182)
T ss_dssp             TTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEETTTEESSCE
T ss_pred             CCCCccCcccccccccCCceeeecccCCCCcCccccccccccccccccceeEEEEeehHHHHHHHHhcCCCCCCCCCCCE
Confidence            99999999999899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeeEecCC
Q 024387          257 RIINSGELPLD  267 (268)
Q Consensus       257 ~I~~cGvL~~~  267 (268)
                      +|.+||+|..+
T Consensus       161 ~I~~cG~l~~~  171 (182)
T d1h0pa_         161 IIAASGHIAVD  171 (182)
T ss_dssp             EEEEEEEEEEE
T ss_pred             EEEECCeEeCC
Confidence            99999999753

>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]

Probab=100.00  E-value=3.2e-47  Score=325.06  Aligned_cols=169  Identities=64%  Similarity=1.075  Sum_probs=160.0

Q ss_pred             cccccceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCCCcc
Q 024387           97 QAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGIS  176 (268)
Q Consensus        97 ~~~~~~~v~fDi~i~~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s  176 (268)
                      .|++|.+|||||+++++++|+|+||||.+.||++|+||++||+.++ +..|+|+.|||+++++++|+|++...++.++..
T Consensus         3 ~p~~t~~vy~di~i~~~~~G~ivieL~~d~aP~tv~nF~~l~~~~k-~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~   81 (182)
T d2rmca_           3 GPSVTDKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEK-GYGYKGSIFHRVIKDFMIQGGDFTARDGTGGMS   81 (182)
T ss_dssp             SCEEEEEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTT-SCSSTTCBEEEEETTTEEEECCCSSSSSSCCCB
T ss_pred             CCccCCeEEEEEEECCEECcEEEEEEcCCCCcHHHHHHHHhhhcCC-CccccCceeeeeecCceEEcCCCCCCCCCCCCC
Confidence            4789999999999999999999999999999999999999998543 334999999999999999999998888888899


Q ss_pred             ccCCCCCCCccccccCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCCCCCCCCCCe
Q 024387          177 IYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPC  256 (268)
Q Consensus       177 ~~g~~~~de~~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td~~~~P~~~I  256 (268)
                      .++..+++++....|..+|+|+|++.++++++|||||++.+.++||++|+|||+|++|||||++|++++++++++|.++|
T Consensus        82 ~~~~~~~~~~~~~~~~~~G~lsma~~~~~s~~sqFfI~~~~~~~ld~~~~vFG~Vi~G~dvl~~I~~~~~~~~~~P~~~v  161 (182)
T d2rmca_          82 IYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDC  161 (182)
T ss_dssp             TTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCE
T ss_pred             CcCCcccccccccccCCCccEehhhcCCCccCccccccccCCchhcccceEEEEEechHHHHHHHHhCCcCCCCcCCCCe
Confidence            99999999999889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeeEecC
Q 024387          257 RIINSGELPL  266 (268)
Q Consensus       257 ~I~~cGvL~~  266 (268)
                      +|.+||+|+.
T Consensus       162 ~I~~~g~l~~  171 (182)
T d2rmca_         162 TIVNSGKIDV  171 (182)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEeeEEeC
Confidence            9999999974

>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=100.00  E-value=3.2e-47  Score=320.27  Aligned_cols=165  Identities=59%  Similarity=1.061  Sum_probs=153.8

Q ss_pred             ccccceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCCCccc
Q 024387           98 AKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISI  177 (268)
Q Consensus        98 ~~~~~~v~fDi~i~~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~  177 (268)
                      |++|++|||||+++++.+|+|+||||.+.||++|+||++||+.+ .+.+|+|+.|||+++++++|+|+....++.++...
T Consensus         2 p~~t~~V~~di~i~~~~~G~i~ieL~~~~aP~t~~nF~~l~~~~-~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~   80 (166)
T d1xo7a_           2 PVVTDKVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGE-NGFGYKGSIFHRVIRNFMIQGGDFTNFDGTGGKSI   80 (166)
T ss_dssp             CCCCEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTT-TSCCSTTCBEEEEETTTEEEECCTTTSSSSCCCBT
T ss_pred             CCCCCeEEEEEEECCEECcEEEEEECCCCChHHHHHHHHhhccc-ccccccCcEEEEEcCCCEEEeCCCCCCCCCCCCCC
Confidence            67899999999999999999999999999999999999999944 45569999999999999999999998888888887


Q ss_pred             cCCCCCCCccccccCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeE
Q 024387          178 YGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCR  257 (268)
Q Consensus       178 ~g~~~~de~~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td~~~~P~~~I~  257 (268)
                      ++..++++.....| .+|+|+|++.++++++|||||+++++++||++|+|||+|++|||+|++|++++++.+++|.++|+
T Consensus        81 ~~~~~~~~~~~~~~-~~G~l~~a~~g~~s~~sqFfIt~~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~  159 (166)
T d1xo7a_          81 YGTRFDDENLKIKH-FVGAVSMANAGPNSNGSQFFVTTAPTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVK  159 (166)
T ss_dssp             TBSCBCCCCCCSCC-CTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSSCEE
T ss_pred             CCcccccccccccc-cccceeecccCCCCCCCeeEEccCCccccCccceeeeEEeeHHHHHHHHHcCCCCCCCCCCCCEE
Confidence            77777777765555 69999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeeEe
Q 024387          258 IINSGEL  264 (268)
Q Consensus       258 I~~cGvL  264 (268)
                      |.+||+|
T Consensus       160 I~~cgvl  166 (166)
T d1xo7a_         160 INDCGVL  166 (166)
T ss_dssp             EEEEEEC
T ss_pred             EEeeEeC
Confidence            9999997

>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-46  Score=315.53  Aligned_cols=163  Identities=65%  Similarity=1.118  Sum_probs=152.7

Q ss_pred             cceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCCCccccCC
Q 024387          101 TTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGS  180 (268)
Q Consensus       101 ~~~v~fDi~i~~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~  180 (268)
                      +++|||||+++++++|+|+||||++.||++|+||++||+.++ +..|+|+.|||+++++++|+|++...++.++...++.
T Consensus         2 n~~v~~Di~i~~~~~G~i~ieL~~~~aP~tv~nF~~l~~~~~-~~~Y~g~~f~rv~~~~~iq~g~~~~~~~~~~~~~~~~   80 (164)
T d2z6wa1           2 NPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEK-GFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGS   80 (164)
T ss_dssp             CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTT-SCCSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBS
T ss_pred             CCeEEEEEEECCEeceEEEEEECCCcCcHHHHHHHHHHhcCC-CcccCCcEEEEecccceEecCCccCCCCCCCccccCC
Confidence            679999999999999999999999999999999999998553 3339999999999999999999988888888888999


Q ss_pred             CCCCCccccccCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEe
Q 024387          181 SFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIIN  260 (268)
Q Consensus       181 ~~~de~~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td~~~~P~~~I~I~~  260 (268)
                      .++++.....|..+|+|+||+.++++++|||||++.+.++||++|+|||+|++|||||++|+++++ ++++|.++|+|.+
T Consensus        81 ~~~~~~~~~~~~~~G~lsma~~~~~s~~sqFfi~~~~~~~ldg~ytVFG~Vv~G~dvl~~I~~~~~-~~~~P~~~i~I~~  159 (164)
T d2z6wa1          81 RFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGS-KSGRTSKKIVITD  159 (164)
T ss_dssp             CBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCC-TTSCCSSCEEEEE
T ss_pred             cCCccccccccCCccEEEEecCCCCCCCcceeccccCCCcccccceEEEEecccHHHHHHHHhCCC-CCCCCCCCEEEEe
Confidence            999999889999999999999999999999999999999999999999999999999999999876 4789999999999


Q ss_pred             eeEec
Q 024387          261 SGELP  265 (268)
Q Consensus       261 cGvL~  265 (268)
                      ||+|.
T Consensus       160 cG~l~  164 (164)
T d2z6wa1         160 CGQLS  164 (164)
T ss_dssp             EEECC
T ss_pred             CeecC
Confidence            99983

>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-46  Score=314.47  Aligned_cols=161  Identities=60%  Similarity=1.004  Sum_probs=150.7

Q ss_pred             cceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCCCccccCC
Q 024387          101 TTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGS  180 (268)
Q Consensus       101 ~~~v~fDi~i~~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~  180 (268)
                      +|+|||||+++++.+|+|+||||.++||+||+||++||+..+.++ |+|+.|||++|++++|+|++...++.+++..++.
T Consensus         1 np~vy~di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~-Y~g~~f~Rv~~~~~iq~G~~~~~~~~~~~~~~~~   79 (161)
T d2r99a1           1 NPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG-FKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGK   79 (161)
T ss_dssp             CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCC-STTCBEEEEETTTEEEECCTTTSSSSCCCBTTBS
T ss_pred             CCEEEEEEEECCEeceEEEEEEcCCCCcHHHHHHHHhhhhccccc-cCCcEEEEEEEeeeEEeeeccCCCCCCCccccCc
Confidence            579999999999999999999999999999999999998433344 9999999999999999999998888888888898


Q ss_pred             CCCCCccccccCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEe
Q 024387          181 SFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIIN  260 (268)
Q Consensus       181 ~~~de~~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td~~~~P~~~I~I~~  260 (268)
                      .++++....+|..+|+|+|++.+|++++|||||++.+.++||++|+|||+|++|||||++|+.. .+++++|.++|+|.+
T Consensus        80 ~~~~~~~~~~~~~~G~ls~~~~~~~s~~sqFfI~~~~~~~Ldg~~tvFG~Vv~G~dvl~~I~~~-~~~~~~P~~~i~I~~  158 (161)
T d2r99a1          80 KFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQ-GSKDGKPKQKVIIAD  158 (161)
T ss_dssp             CBCCCCCCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTT-CCTTCCCSSCEEEEE
T ss_pred             cccccccccccccceeeeecccCCCCcCcceEeccCCccccCCcceEEEEEeehHHHHHHHHcc-CCCCCcCCCCEEEEe
Confidence            8899999999999999999999999999999999999999999999999999999999999876 567899999999999


Q ss_pred             eeE
Q 024387          261 SGE  263 (268)
Q Consensus       261 cGv  263 (268)
                      ||+
T Consensus       159 CGe  161 (161)
T d2r99a1         159 CGE  161 (161)
T ss_dssp             EEE
T ss_pred             CCC
Confidence            997

>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]

Probab=100.00  E-value=1.2e-46  Score=318.24  Aligned_cols=165  Identities=59%  Similarity=1.032  Sum_probs=153.9

Q ss_pred             ccceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHHhcCC----CCcccCCCEEEEEEcCceeeeCCCcCCCCCCCc
Q 024387          100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGE----KGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGI  175 (268)
Q Consensus       100 ~~~~v~fDi~i~~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~----kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~  175 (268)
                      ++|+|||||+++++.+|+|+||||.+.||++|+||++||+.|+    ++.+|+++.|||+++++++|+|+...+.+....
T Consensus         5 ~np~v~~di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~~~~~~y~~~~f~rv~~~~~~q~G~~~~~~~~~~~   84 (173)
T d1qoia_           5 VNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVA   84 (173)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHSCCEETTEECSSTTCBCCEEETTTEEEECCTTTSSSCCCC
T ss_pred             CCCEEEEEEEECCEeCeEEEEEEcCCCCcHHHHHHHHhhcccccccCCCCCcCCcccceeccceeeccCCcccCCcceee
Confidence            5899999999999999999999999999999999999999664    345699999999999999999999877776666


Q ss_pred             cccCCCCCCCccccccCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCCCCCCCCCC
Q 024387          176 SIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVP  255 (268)
Q Consensus       176 s~~g~~~~de~~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td~~~~P~~~  255 (268)
                      ..++..++++.....|..+|+|+|++.++++++|||||++.+.++||++|+|||+|++|||||++|++++++++++|.++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~G~l~ma~~~~~s~~sqFfI~~~~~~~ldg~~tvFG~Vi~G~dvl~~I~~~~t~~~~~P~~~  164 (173)
T d1qoia_          85 SIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLP  164 (173)
T ss_dssp             CTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSSC
T ss_pred             cccCCcccccccccccCCCcEEEeeecCCCCCCceeeeeccCCccCCcceeEEEEEechHHHHHHHHhCCcCCCCcCCCC
Confidence            66777788888888888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEeeeEe
Q 024387          256 CRIINSGEL  264 (268)
Q Consensus       256 I~I~~cGvL  264 (268)
                      |+|.+||+|
T Consensus       165 i~I~~cGel  173 (173)
T d1qoia_         165 VVISQCGEM  173 (173)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEcccCC
Confidence            999999997

>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]

Probab=100.00  E-value=5.9e-46  Score=314.37  Aligned_cols=164  Identities=65%  Similarity=1.106  Sum_probs=153.1

Q ss_pred             ccceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHHhcC-------CCCcccCCCEEEEEEcCceeeeCCCcCCCCC
Q 024387          100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAG-------EKGYGYKGCSFHRIIKDFMIQGGDFTEGDGT  172 (268)
Q Consensus       100 ~~~~v~fDi~i~~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G-------~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~  172 (268)
                      .+++|||||+++++++|+|+||||.+.||+||+||++||+..       ..++ |+|+.|||+++++++|+|+...+++.
T Consensus         2 ~~~~v~~Di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~~~~k~~~-y~~~~f~rv~~~~~i~~G~~~~~~~~   80 (172)
T d2igva1           2 SRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLH-FKGSKFHRIIPNFMIQGGDFTRGNGT   80 (172)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSC-CTTCBCCEEETTTEEEECCTTTSSSS
T ss_pred             CCCEEEEEEEECCEeccEEEEEEcCCCCcHHHHHHHHHHhccccccccCcccc-cCCcceeEEEecceEEcCCccCCCCC
Confidence            478999999999999999999999999999999999999831       1234 99999999999999999999988999


Q ss_pred             CCccccCCCCCCCccccccCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCCCCCCC
Q 024387          173 GGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYP  252 (268)
Q Consensus       173 gg~s~~g~~~~de~~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td~~~~P  252 (268)
                      ++..+++..+++|.....|..+|+|+|++.+|++++|||||++.+.++||++|+|||+|++|||||++|++.+ +++++|
T Consensus        81 ~~~~~~~~~~~~e~~~~~~~~~G~lsma~~~~~~~~sqFfIt~~~~~~ld~~~~vFG~Vv~Gmdvl~~I~~~~-~~~g~P  159 (172)
T d2igva1          81 GGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNG-SQSGKP  159 (172)
T ss_dssp             CCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTC-CTTSCC
T ss_pred             CCcccCCCccCccccccccCCCcEEEEeecCCCCcCceeEeeecCCcccCCceeEEEEEeccHHHHHHHHcCC-CCCCCC
Confidence            9999999999999998899999999999999999999999999999999999999999999999999999975 467899


Q ss_pred             CCCeEEEeeeEec
Q 024387          253 KVPCRIINSGELP  265 (268)
Q Consensus       253 ~~~I~I~~cGvL~  265 (268)
                      .++|+|.+||+|+
T Consensus       160 ~~~i~I~~cG~l~  172 (172)
T d2igva1         160 VKDCMIADCGQLK  172 (172)
T ss_dssp             SSCEEEEEEEEEC
T ss_pred             CCCeEEEeccccC
Confidence            9999999999995

>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]

Probab=100.00  E-value=6.9e-46  Score=313.23  Aligned_cols=162  Identities=58%  Similarity=0.995  Sum_probs=151.5

Q ss_pred             cceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHHhcC------CCCcccCCCEEEEEEcCceeeeCCCcCCCCCCC
Q 024387          101 TTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAG------EKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGG  174 (268)
Q Consensus       101 ~~~v~fDi~i~~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G------~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg  174 (268)
                      +++|||||+++++++|+|+||||++.||++|+||++||+..      ..++ |+|+.|||+++++++|+|+...+++.++
T Consensus         3 r~~vy~Di~i~~t~~G~ivIeL~~~~aP~tv~nF~~l~~~~~~~~~~~~~~-y~g~~~~rv~~~~~iq~g~~~~~~~~~~   81 (170)
T d1qnga_           3 RSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLH-YKNSIFHRIIPQFMCQGGDITNGNGSGG   81 (170)
T ss_dssp             SCEEEEEEEESSSEEEEEEEEECTTTCHHHHHHHHHHHHTCEECTTSSEEC-CTTCBCCEEETTTEEEECCTTTSSSSCC
T ss_pred             CCEEEEEEEECCEEccEEEEEECCCCChHHHHHHHhhhccccccccCccCc-cCcccceEEEeCceEEecCccCCCCCCC
Confidence            67999999999999999999999999999999999999831      1234 9999999999999999999998888888


Q ss_pred             ccccCCCCCCCccccccCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCCCCCCCCC
Q 024387          175 ISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKV  254 (268)
Q Consensus       175 ~s~~g~~~~de~~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td~~~~P~~  254 (268)
                      ...++..++++...+.|+.+|+|+|++.++++++|||||++.++++||++|+|||+|++|||||++|++.+++ +++|.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~G~lsma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~Vv~Gmdvl~~I~~~~~~-~g~P~~  160 (170)
T d1qnga_          82 ESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGAK-SGYVKR  160 (170)
T ss_dssp             CBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TCCCSS
T ss_pred             cccCCCccccccccccCCCCeEEEEeecCCCCccccceeccCCcccccccccEEeEEeccHHHHHHHHhcCCC-CcCCcc
Confidence            8899999999999999999999999999999999999999999999999999999999999999999998664 678999


Q ss_pred             CeEEEeeeEe
Q 024387          255 PCRIINSGEL  264 (268)
Q Consensus       255 ~I~I~~cGvL  264 (268)
                      +|+|.+||+|
T Consensus       161 ~i~I~~CG~l  170 (170)
T d1qnga_         161 SVVITDCGEL  170 (170)
T ss_dssp             CEEEEEEEEC
T ss_pred             CEEEEeeEcC
Confidence            9999999997

>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]

Probab=100.00  E-value=1.7e-45  Score=308.86  Aligned_cols=160  Identities=62%  Similarity=1.071  Sum_probs=150.4

Q ss_pred             ceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCCCccccCCC
Q 024387          102 TKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSS  181 (268)
Q Consensus       102 ~~v~fDi~i~~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~  181 (268)
                      .+|||||+++++++|+|+||||+++||++|+||++||+.+. +.+|+|+.|||+++++++|+|++..+++.++...+...
T Consensus         2 ~~V~fDi~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~-~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~   80 (162)
T d2cfea1           2 SNVFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEK-GFGYAGSHFHRVIPDFMLQGGDFTAGNGTGGKSIYGAK   80 (162)
T ss_dssp             CCEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTT-SCCSTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSC
T ss_pred             CeEEEEEEECCEEeeEEEEEEcCCCChHHHHHHHHHHhhcc-CCccCCCEEEEEEecceEecCCCCCCCCCCCcccCCCc
Confidence            37899999999999999999999999999999999999543 44599999999999999999999988888888888999


Q ss_pred             CCCCccccccCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEee
Q 024387          182 FEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINS  261 (268)
Q Consensus       182 ~~de~~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td~~~~P~~~I~I~~c  261 (268)
                      +.+|+..+.|..+|+|+|++.++++++|||||++.+.++||++|+|||+|++|||||++|+.. .+++++|.++|+|.+|
T Consensus        81 ~~~e~~~~~h~~~G~vsm~~~~~~s~~sqF~I~~~~~~~ld~~~~vFG~Vi~G~dvl~~I~~~-~~~~~~P~~~i~I~~c  159 (162)
T d2cfea1          81 FADENFQLKHNKPGLLSMANAGPNTNGSQFFITTVVTSWLDGKHVVFGEVIDGMNVVKAIEAE-GSGSGKPRSRIEIAKC  159 (162)
T ss_dssp             BCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTT-CCTTSCCSSCEEEEEE
T ss_pred             cccccCCCCCCCceEEEEeecCCCCCCcceEEeecCCccccccceEEEEEEehHHHHHHHhcC-CCCCCCCCCCeEEEee
Confidence            999999999999999999999999999999999999999999999999999999999999875 5679999999999999


Q ss_pred             eE
Q 024387          262 GE  263 (268)
Q Consensus       262 Gv  263 (268)
                      ||
T Consensus       160 gv  161 (162)
T d2cfea1         160 GV  161 (162)
T ss_dssp             EE
T ss_pred             Ec
Confidence            97

>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]

Probab=100.00  E-value=2.7e-45  Score=310.19  Aligned_cols=163  Identities=58%  Similarity=0.957  Sum_probs=153.2

Q ss_pred             cceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHHhcCC--------CCcccCCCEEEEEEcCceeeeCCCcCCCCC
Q 024387          101 TTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGE--------KGYGYKGCSFHRIIKDFMIQGGDFTEGDGT  172 (268)
Q Consensus       101 ~~~v~fDi~i~~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~--------kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~  172 (268)
                      +++|||||+++++.+|+|+||||.+.||++|+||++||+.+.        .++ |+|+.|||+++++++|+|+...+++.
T Consensus         3 ~~~v~~di~i~~~~~G~I~ieL~~d~aP~tv~nF~~l~~~~~~~~~~~~k~~~-Y~~~~f~Rv~~~~~iq~g~~~~~~~~   81 (174)
T d1a33a_           3 RRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLH-YKGSTFHRVIKNFMIQGGDFTKGDGT   81 (174)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCC-CTTCBEEEEETTTEEEECCTTTSSSS
T ss_pred             CCEEEEEEEECCEeceEEEEEECCCCChHHHHHHHHHHhcccCCCcccCccce-eCCceeeEEEeCCEEeeCCCCCCCCC
Confidence            679999999999999999999999999999999999998421        134 99999999999999999999888888


Q ss_pred             CCccccCCCCCCCccccccCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCCCCCCC
Q 024387          173 GGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYP  252 (268)
Q Consensus       173 gg~s~~g~~~~de~~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td~~~~P  252 (268)
                      ++.+.++....++....+|.++|+|+|++.+|++++|||||++.+.|+||++|+|||+|++|||||++|++++++++++|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~s~~sqFfI~~~~~p~ld~~~~vFG~VveG~dvl~~I~~~~t~~~~~P  161 (174)
T d1a33a_          82 GGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRP  161 (174)
T ss_dssp             CCCCTTSSCBCCCCSCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCB
T ss_pred             CCCCccCccccccccccccCcceeeeeeccCCCCCCcccccccCCcccccccceeEEEEechHHHHHHHHhCCcCCCCCC
Confidence            88888888888888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEeeeEe
Q 024387          253 KVPCRIINSGEL  264 (268)
Q Consensus       253 ~~~I~I~~cGvL  264 (268)
                      .++|+|.+||+|
T Consensus       162 ~~~i~I~~cGel  173 (174)
T d1a33a_         162 LADVVILNCGEL  173 (174)
T ss_dssp             SSCEEEEEEEEC
T ss_pred             CCCEEEEeeEEE
Confidence            999999999997

>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7.2e-45  Score=313.66  Aligned_cols=165  Identities=63%  Similarity=1.026  Sum_probs=154.1

Q ss_pred             ccceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHHhcCC--------CCcccCCCEEEEEEcCceeeeCCCcCCCC
Q 024387          100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGE--------KGYGYKGCSFHRIIKDFMIQGGDFTEGDG  171 (268)
Q Consensus       100 ~~~~v~fDi~i~~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~--------kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g  171 (268)
                      .+++|||||+++++.+|+|+||||.+.||++|+||++||+.+.        .++ |+|+.|||+++++++|+|+.....+
T Consensus        13 ~np~v~~Di~i~~~~~G~I~IeL~~d~aP~tv~nF~~L~~~~~~~~~~~~~~~~-y~g~~f~rv~~~~~i~~G~~~~~~~   91 (195)
T d1ihga2          13 SNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLH-FKGCPFHRIIKKFMIQGGDFSNQNG   91 (195)
T ss_dssp             TSCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSC-CTTCBEEEEETTTEEEECCTTTSSS
T ss_pred             CCCEEEEEEEECCEeeeEEEEEECCCCChHHHHHHHHHhccccccccccCCccc-cCCceeeEEEcCceeecCCccCCCC
Confidence            3899999999999999999999999999999999999998432        123 9999999999999999999988888


Q ss_pred             CCCccccCCCCCCCccccccCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCCCCCC
Q 024387          172 TGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDY  251 (268)
Q Consensus       172 ~gg~s~~g~~~~de~~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td~~~~  251 (268)
                      .++...++..+++|.....|..+|+|+|++.++++++|||||+|++.++||++|+|||+|++|||||++|++++++ +++
T Consensus        92 ~~~~~~~~~~~~~~~~~~~h~~~G~lsm~~~~~~s~~SqFfItl~~~~~LDg~ytVFG~Vv~Gmdvl~~I~~~~t~-~~~  170 (195)
T d1ihga2          92 TGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVK-GEK  170 (195)
T ss_dssp             SCCCBTTBSCBCCCCCCBCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEE-TTE
T ss_pred             CCCccCCCCcccccccCcccCcceEEeeeecCCCCCCceeEeeccCCcccCCcceEEEEEecCHHHHHHHHcCCCC-CCC
Confidence            8888888999999999999999999999999999999999999999999999999999999999999999998875 789


Q ss_pred             CCCCeEEEeeeEecC
Q 024387          252 PKVPCRIINSGELPL  266 (268)
Q Consensus       252 P~~~I~I~~cGvL~~  266 (268)
                      |.++|+|.+||+|+.
T Consensus       171 P~~~i~I~~cG~l~~  185 (195)
T d1ihga2         171 PAKLCVIAECGELKE  185 (195)
T ss_dssp             ESSCEEEEEEEEECT
T ss_pred             cCCCeEEEECcccCC
Confidence            999999999999964

>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]

Probab=100.00  E-value=7e-45  Score=311.46  Aligned_cols=164  Identities=49%  Similarity=0.920  Sum_probs=154.2

Q ss_pred             cceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHHhcCC----CCcccCCCEEEEEEcCceeeeCCCcCCCCCCCcc
Q 024387          101 TTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGE----KGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGIS  176 (268)
Q Consensus       101 ~~~v~fDi~i~~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~----kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s  176 (268)
                      +++|||||+++++.+|+|+||||.+.||++|+||++||+.++    +.++|+|+.|||+++++++|+|+....++.+...
T Consensus        16 np~V~~di~i~~~~~G~I~ieL~~d~aP~tv~nF~~L~~~~~~~~~~~~~Y~g~~f~rv~~~~~i~~G~~~~~~~~~~~~   95 (186)
T d1z81a1          16 NPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFINHNGSGSLS   95 (186)
T ss_dssp             CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCBSSSSBCSSTTEECCEEETTTEEEECCTTTSSSCCCCB
T ss_pred             CCEEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHHhcccccCCcccccCCCeeeeeecceeeecCCccccCCccccc
Confidence            789999999999999999999999999999999999999654    2345999999999999999999998888888888


Q ss_pred             ccCCCCCCCccccccCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcC--HHHHHHhhcCCCCC-CCCCC
Q 024387          177 IYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDG--MDVVRKLESVETSR-TDYPK  253 (268)
Q Consensus       177 ~~g~~~~de~~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveG--mdvL~~I~~~~td~-~~~P~  253 (268)
                      .++..++++....+|.++|+++|++.++++++|||||++++.++||++|+|||+|++|  ||+|++|+++++++ +++|.
T Consensus        96 ~~~~~~~~~~~~~~~~~~G~~~~~~~g~~~~~sqFfIt~~~~p~Ldg~~tVFG~Vv~G~~mdvv~kI~~~~~~~~~~~P~  175 (186)
T d1z81a1          96 IYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPK  175 (186)
T ss_dssp             TTBSCCCCCCCCSCCCSTTEEEECCSSSSCCCSCEEEESSCCGGGBTTBCEEEEECSHHHHHHHHHHHHSCBCTTTCCBS
T ss_pred             ccCCcccccccccccCCCccchhhhcCCCccccceeeecccccccCCCccEEEEEEeCccHHHHHHHhccCCCCCCCccC
Confidence            8899999999999999999999999999999999999999999999999999999998  99999999999875 78999


Q ss_pred             CCeEEEeeeEe
Q 024387          254 VPCRIINSGEL  264 (268)
Q Consensus       254 ~~I~I~~cGvL  264 (268)
                      ++|+|.+||+|
T Consensus       176 ~~i~I~~CGel  186 (186)
T d1z81a1         176 IPINVVECGEL  186 (186)
T ss_dssp             SCEEEEEEEEC
T ss_pred             CCEEEEeCCcC
Confidence            99999999997

>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]

Probab=100.00  E-value=1e-43  Score=300.47  Aligned_cols=162  Identities=57%  Similarity=0.965  Sum_probs=121.4

Q ss_pred             ceEEEEEE-----ECCeeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCCCcc
Q 024387          102 TKVFFDVD-----IGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGIS  176 (268)
Q Consensus       102 ~~v~fDi~-----i~~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s  176 (268)
                      ++|||||+     +++|++|+|+||||.++||++|+||++||+.++ +.+|+++.|||+++++++|+||+..+++.++..
T Consensus         2 ~~v~~di~~~~~~~~~T~~G~i~IeL~~~~aP~tv~nF~~l~~~~~-~~~y~~~~f~ri~~~~~iq~G~~~~~~~~~~~~   80 (171)
T d2c3ba1           2 SQVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPA-GEGYRESTFHRIIPNFMIQGGDFTRGNGTGGRS   80 (171)
T ss_dssp             CCEEEEEEECCTTCSCCEEEEEEEEECTTTSHHHHHHHHHHHHSCT-TTSSTTCBCCEEETTTEEEECC-----------
T ss_pred             CeEEEeeeccccccccceeeEEEEEEcCCCChHHHHHHHHHhhhcc-cccccCceeeEEEEEEeeEcCCccCCCCCCCCc
Confidence            57999998     567899999999999999999999999999543 445999999999999999999998888888888


Q ss_pred             ccCCCCCCCccccccCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEc--CHHHHHHhhcCCCCC-CCCCC
Q 024387          177 IYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVID--GMDVVRKLESVETSR-TDYPK  253 (268)
Q Consensus       177 ~~g~~~~de~~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~Vve--GmdvL~~I~~~~td~-~~~P~  253 (268)
                      .++..+.++...+.|..+|+|+||+.+|++++|||||++.+.++||++|+|||+|+|  |||||++|++++++. +.+|.
T Consensus        81 ~~~~~~~~~~~~~~~~~~G~lsma~~~~~s~~sqFfI~~~~~~~ldg~~tvFG~Vie~~G~dvl~~I~~~~t~~g~~~p~  160 (171)
T d2c3ba1          81 IYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSN  160 (171)
T ss_dssp             -----------CHHHHHTCEEEEC---------CEEEECSCCTTCCSCCEEEEEECSHHHHHHHHHHHTTCCTTSCCCSS
T ss_pred             CCCCccccccccccCCCCceEEeeecCCCCCCcceeeccCCccccCCCceEEEEEEeccCHHHHHHHHcCCCCCCCcCCC
Confidence            888888888888999899999999999999999999999999999999999999995  999999999999877 44799


Q ss_pred             CCeEEEeeeEe
Q 024387          254 VPCRIINSGEL  264 (268)
Q Consensus       254 ~~I~I~~cGvL  264 (268)
                      ++|+|.+||+|
T Consensus       161 ~~v~I~~cGel  171 (171)
T d2c3ba1         161 TRPKIVNCGEL  171 (171)
T ss_dssp             SCCEEEEEEEC
T ss_pred             CCEEEEeCccC
Confidence            99999999997

>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-41  Score=284.23  Aligned_cols=150  Identities=48%  Similarity=0.716  Sum_probs=135.3

Q ss_pred             CeeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCCCccccCCCCCCCc-cccc
Q 024387          112 GKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDES-FVLK  190 (268)
Q Consensus       112 ~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~~de~-~~l~  190 (268)
                      .|+.|+|+||||.+.||++|+||++||+.|+    |+|+.|||++++|+||+||+... +.++...++..+++|. ..++
T Consensus         6 ~T~~G~i~ieL~~~~aP~tv~nF~~L~~~g~----Y~~~~f~rv~~~~~iq~Gd~~~~-~~~~~~~~~~~~~~e~~~~~~   80 (159)
T d2ok3a1           6 HTDVGDIKIEVFCERTPKTCENFLALCASNY----YNGCIFHRNIKGFMVQTGDPTGT-GRGGNSIWGKKFEDEYSEYLK   80 (159)
T ss_dssp             EETTEEEEEEECTTTCHHHHHHHHHHHHTTT----TTTCBCCEEETTTEEEECCTTSS-SSCCCCTTSSCBCCCCCTTCC
T ss_pred             EeCCeEEEEEEcCCCChHHHHHHHHHHhhhc----ccceeEecccCCeEEEeCCcccc-CCCCcccCCCccccccccCCC
Confidence            4778999999999999999999999999777    99999999999999999998743 4444556677777664 4678


Q ss_pred             cCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCCC-CCCCCCCeEEEeeeEecC
Q 024387          191 HVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSR-TDYPKVPCRIINSGELPL  266 (268)
Q Consensus       191 h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td~-~~~P~~~I~I~~cGvL~~  266 (268)
                      |.++|+|+|++.++++++|||||++.+.++||++|+|||+|++|||+|++|+++++++ +++|.++|+|.+|++|..
T Consensus        81 ~~~~G~lsma~~~~~s~~sqFfIt~~~~p~ld~~~tvFG~V~~G~~vl~~I~~~~~~~~~~~P~~~i~I~~v~i~~~  157 (159)
T d2ok3a1          81 HNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIHAN  157 (159)
T ss_dssp             SCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTTCCBSSCCBEEEEEEECC
T ss_pred             CCCCeEEEEeeCCCCCcCcceEeeeccCcccccceEEEEecccchHHHHHHHcCcCCCCCCCcCCCcEEEEEEEEeC
Confidence            9899999999999999999999999999999999999999999999999999999876 578999999999999864

>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-40  Score=283.65  Aligned_cols=149  Identities=47%  Similarity=0.776  Sum_probs=138.7

Q ss_pred             eeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCCCccccCCCCCCCc-ccccc
Q 024387          113 KPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDES-FVLKH  191 (268)
Q Consensus       113 t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~~de~-~~l~h  191 (268)
                      |+.|+|+||||.+.||++|+||++||+.|+    |+|+.|||+++++++|+||+. .++.++...++..+++|. ..++|
T Consensus         7 T~~G~i~IeL~~~~aP~tv~nF~~L~~~~~----Y~g~~f~rv~~~~~iq~Gd~~-~~~~~~~~~~~~~~~~E~~~~l~~   81 (178)
T d1zkca1           7 TNKGDLNLELHCDLTPKTCENFIRLCKKHY----YDGTIFHRSIRNFVIQGGDPT-GTGTGGESYWGKPFKDEFRPNLSH   81 (178)
T ss_dssp             ETTEEEEEEECTTTSHHHHHHHHHHHHTTT----TTTEEEEEEETTTEEEECCTT-SSSSCCCBTTBSCBCCCCCTTCCS
T ss_pred             eCCEEEEEEEcCCCChHHHHHHHHHHhcCC----cCceEeeeccceeEEecCCcc-CCCCCCcccCCCCcCCccccccCC
Confidence            678999999999999999999999999777    999999999999999999976 567788888888898875 46889


Q ss_pred             CCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCC-CCCCCCCCeEEEeeeEecC
Q 024387          192 VGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETS-RTDYPKVPCRIINSGELPL  266 (268)
Q Consensus       192 ~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td-~~~~P~~~I~I~~cGvL~~  266 (268)
                      ..+|+|+|++.++++++|||||++.+.++||++|+|||+|++|||+|++|++++++ .+++|.++|+|.+|.+|.+
T Consensus        82 ~~~G~lsma~~~~~s~~sqF~It~~~~~~ld~~~~vFG~Vv~G~dvl~~I~~~~t~~~~~~P~~~v~I~~~~Il~~  157 (178)
T d1zkca1          82 TGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATTVFVD  157 (178)
T ss_dssp             CSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTTCCBSSCCEEEEEEEEEC
T ss_pred             CCCeEEEEeecCCCCccceeeccccCCcccCCcceEEEEeeCcHHHHHHHHcCCCCCCCCccCCCeEEEEEEEEcC
Confidence            89999999999999999999999999999999999999999999999999999997 4789999999999999864

>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]

Probab=100.00  E-value=7.7e-41  Score=278.02  Aligned_cols=147  Identities=50%  Similarity=0.804  Sum_probs=136.8

Q ss_pred             CeeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCCCccccCCCCCCCcc-ccc
Q 024387          112 GKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESF-VLK  190 (268)
Q Consensus       112 ~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~~de~~-~l~  190 (268)
                      .|++|+|+||||.+.||++|+||++||+.|+    |+|+.|||+++++++|+||+. +.+.++.+.++..+++|.. .+.
T Consensus         7 ~T~~G~i~ieL~~~~aP~tv~nF~~l~~~g~----Y~g~~f~rv~~~~~iq~Gd~~-~~~~~~~~~~~~~~~~~~~~~~~   81 (155)
T d2fu0a1           7 YTTMGDIHISLFYKECKKTVQNFSVHSINGY----YNNCIFHRVIKHFMVQTGDPS-GDGTGGESIWGNEFEDEFFDHLN   81 (155)
T ss_dssp             EETTEEEEEEECTTTCHHHHHHHHHHHHTTT----TTTCBCCEEETTTEEEECCTT-SSSSCCCCTTSSCBCCCCBTTBC
T ss_pred             EEcccEEEEEEcCCCChHHHHHHhhHhhCCc----cccceeeeeeecceeeccCCC-CCCcCCcccCCCccccccccccc
Confidence            5789999999999999999999999999777    999999999999999999986 5566777888888888765 578


Q ss_pred             cCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEeeeE
Q 024387          191 HVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGE  263 (268)
Q Consensus       191 h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td~~~~P~~~I~I~~cGv  263 (268)
                      |.++|+++|++.++++++|||||++.+.++||++|+|||+|++|||||++|++++++++++|.++|+|.+|.+
T Consensus        82 ~~~~~~~~~~~~~~~s~~sqFfI~~~~~~~ld~~~tvFG~Vi~G~~vv~~I~~~~t~~~~~P~~~i~I~~v~i  154 (155)
T d2fu0a1          82 HSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILNIKI  154 (155)
T ss_dssp             SSSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCCBEEEEEE
T ss_pred             cCCccEEEecccCCCCCCccceecccCccccccceEEEEEEeccHHHHHHHHhCCCCCCCCcCCCcEEEEEEE
Confidence            8889999999999999999999999999999999999999999999999999999999999999999999854

>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.4e-41  Score=281.94  Aligned_cols=152  Identities=50%  Similarity=0.854  Sum_probs=139.2

Q ss_pred             cceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCCCccccCC
Q 024387          101 TTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGS  180 (268)
Q Consensus       101 ~~~v~fDi~i~~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~  180 (268)
                      .++|+|+..     +|+|+||||.+.||++|+||++||+.|+    |+|+.|||++++|++|+||+. +++.++...++.
T Consensus        11 ~p~v~~~T~-----~G~i~ieL~~~~aP~tv~nF~~L~~~g~----Y~g~~f~rv~~~~~iq~Gd~~-~~~~~~~~~~~~   80 (166)
T d1xwna1          11 PPNVYLETS-----MGIIVLELYWKHAPKTCKNFAELARRGY----YNGTKFHRIIKDFMIQGGDPT-GTGRGGASIYGK   80 (166)
T ss_dssp             CCEEEEEES-----SCEEEEEECTTTCHHHHHHHHHHHHHTS----STTCCEEEEETTTEEEECCST-TTTSSCCCSSCS
T ss_pred             CCEEEEEEC-----ceeEEEEEcCCCChHHHHHHHHHHhcCC----cCceeeeEEcccEEEEeCCCC-CCCCCCccCCCC
Confidence            457777655     4999999999999999999999999777    999999999999999999986 667777778888


Q ss_pred             CCCCCc-cccccCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEE
Q 024387          181 SFEDES-FVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRII  259 (268)
Q Consensus       181 ~~~de~-~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td~~~~P~~~I~I~  259 (268)
                      .+++|. ..+.|.++|+|+|++.++++++|||||++.+.++||++|+|||+|++|||||++|++++++++++|.++|+|.
T Consensus        81 ~~~~e~~~~~~~~~~G~lsm~~~~~~s~~sqFfI~~~~~~~ld~~~tvFG~Vi~G~dvl~~I~~~~t~~~~~P~~~I~I~  160 (166)
T d1xwna1          81 QFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKII  160 (166)
T ss_dssp             CCCCCCCTTCCSCSSSEEEEEEEETTEEEEEEEEECSCCSTTTTTSEEEEECSSCHHHHHHHHHSCBCSSSCBSSCCCEE
T ss_pred             ccccccCCCCCCCCCeEEEecccCCCCCCcceEEeecChhhccccceEEEEEechHHHHHHHHhCCCCCCCCCCCCeEEE
Confidence            888774 5678889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eee
Q 024387          260 NSG  262 (268)
Q Consensus       260 ~cG  262 (268)
                      ++-
T Consensus       161 ~a~  163 (166)
T d1xwna1         161 KAY  163 (166)
T ss_dssp             EEE
T ss_pred             Eee
Confidence            864

>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]

Probab=100.00  E-value=3.2e-40  Score=278.38  Aligned_cols=152  Identities=43%  Similarity=0.733  Sum_probs=136.2

Q ss_pred             eEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCCCccccCCCC
Q 024387          103 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSF  182 (268)
Q Consensus       103 ~v~fDi~i~~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~  182 (268)
                      +.|+.+.   |++|+|+||||++.||++|+||++||+.|+    |+|+.|||+++++++|||+.. +.+.++.......+
T Consensus        16 ~~~V~l~---T~~G~i~IeL~~d~aP~tv~nF~~L~~~g~----Y~~~~f~rv~~~~~iq~g~~~-~~~~~~~~~~~~~~   87 (169)
T d2b71a1          16 RGYITIY---TNLGDFEVELYWYHSPKTCLNFYTLCEMGF----YDNTIFHRVIPNFVIQGGDPT-GTGKGGKSIYGEYF   87 (169)
T ss_dssp             SCEEEEE---ETTEEEEEEECTTTSHHHHHHHHHHHHTTT----TTTEEEEEEETTTEEEEEETT-SSSSCCCBTTBSCB
T ss_pred             ccEEEEE---eCceeEEEEEeCCCCcHHHHHHHHHhhCCc----cceeeeccccceeeEeccccc-cccCCCcccccccc
Confidence            3454444   458999999999999999999999999777    999999999999999999986 44455666667777


Q ss_pred             CCCc-cccccCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEee
Q 024387          183 EDES-FVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINS  261 (268)
Q Consensus       183 ~de~-~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td~~~~P~~~I~I~~c  261 (268)
                      ++|. ..++|.++|+|+|++.+|++++|||||++++.++||++|+|||+|++|||||++|++++++++++|.++|+|.++
T Consensus        88 ~~e~~~~l~h~~~g~ls~~~~~p~s~~sqFfIt~~~~~~ld~~~tvFG~Vv~G~dvl~~I~~~~~~~~~~P~~~i~I~~~  167 (169)
T d2b71a1          88 EDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQTTATNKPIFDLKILRT  167 (169)
T ss_dssp             CCCCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTCCBSSCCEEEEE
T ss_pred             ccccccccCCCCcEEEEhhhCCCCCCCCEEEEecCCcchhhhhcceeeEEeccHHHHHHHHhCCCCCCCCCCCCeEEEEc
Confidence            7764 468899999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             e
Q 024387          262 G  262 (268)
Q Consensus       262 G  262 (268)
                      +
T Consensus       168 ~  168 (169)
T d2b71a1         168 S  168 (169)
T ss_dssp             E
T ss_pred             c
Confidence            6

>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7.6e-40  Score=275.01  Aligned_cols=154  Identities=33%  Similarity=0.519  Sum_probs=133.7

Q ss_pred             ccceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCCCccccC
Q 024387          100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYG  179 (268)
Q Consensus       100 ~~~~v~fDi~i~~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g  179 (268)
                      -+++|.|+.     +.|+|+||||.++||++|+||++||+.|+    |+|+.|||++++|++|+|+.....+.+.   ++
T Consensus         3 g~~~V~l~T-----~~G~i~ieL~~~~aP~tv~nF~~L~~~~~----Y~g~~fhRv~~~~~iq~G~~~~~~~~~~---~~   70 (166)
T d1v9ta_           3 GDPHVLLTT-----SAGNIELELDKQKAPVSVQNFVDYVNSGF----YNNTTFHRVIPGFMIQGGGFTEQMQQKK---PN   70 (166)
T ss_dssp             CSCEEEEEE-----TTEEEEEEECTTTCHHHHHHHHHHHHTTT----TTTCBEEEEETTTEEEESSBCTTCCBCC---CC
T ss_pred             CCCEEEEEE-----CCeeEEEEEeCCCChHHHHHHHHHhhCCc----cccceeeEEEEEeecccCCcCCcccccC---CC
Confidence            456776654     56999999999999999999999999777    9999999999999999999876555443   46


Q ss_pred             CCCCCCccccccCCCeEEEEec-CCCCCCCccceEEecCCCCCCCC-----ceEEEEEEcCHHHHHHhhcCCCCCC----
Q 024387          180 SSFEDESFVLKHVGPGVLSMAN-AGPNTNGSQFFICTVKTPWLDNR-----HVVFGHVIDGMDVVRKLESVETSRT----  249 (268)
Q Consensus       180 ~~~~de~~~l~h~~~G~lsma~-~gp~s~gSqFfItl~~~~~LDg~-----~~VFG~VveGmdvL~~I~~~~td~~----  249 (268)
                      ..+++|.....|..+|.|+|++ .++++++|||||++.+.++||+.     |+|||+|++|||+|++|+++++++.    
T Consensus        71 ~~~~~e~~~~~~~~rg~v~~~~~~~~~s~~sqFfI~~~~~~~ld~~~~~~~~tvfG~VveG~dvl~~I~~~~~~~~~~~~  150 (166)
T d1v9ta_          71 PPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQ  150 (166)
T ss_dssp             CCBCCCGGGSCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSCCCCCEEEEEEECHHHHHHHHTSCEEEETTEE
T ss_pred             CCccccccccccccCCEEEEEeeecCCCcccccccccCCccccccccccCCEEEeeEEeccHHHHHHHHhCcccCCCCCC
Confidence            7788887655555799999998 56899999999999999998864     8999999999999999999998763    


Q ss_pred             CCCCCCeEEEeeeEec
Q 024387          250 DYPKVPCRIINSGELP  265 (268)
Q Consensus       250 ~~P~~~I~I~~cGvL~  265 (268)
                      ++|.++|+|.+|++||
T Consensus       151 ~~P~~~v~I~~~~vlp  166 (166)
T d1v9ta_         151 NVPSKPVVILSATVLP  166 (166)
T ss_dssp             EEESSCCBEEEEEECC
T ss_pred             CccCCCeEEEEEEEcC
Confidence            4899999999999997

>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-39  Score=269.75  Aligned_cols=148  Identities=47%  Similarity=0.657  Sum_probs=131.4

Q ss_pred             CeeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCCCccccCCCCCCCcccccc
Q 024387          112 GKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKH  191 (268)
Q Consensus       112 ~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~~de~~~l~h  191 (268)
                      .|+.|+|+||||.+.||++|+||++||+.|+    |+|+.|||+++++++|+|++......+.....+....++...++|
T Consensus        15 ~T~~G~i~ieL~~~~aP~tv~nF~~l~~~g~----Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (164)
T d2a2na1          15 HTSMGDIHTKLFPVECPKTVENFCVHSRNGY----YNGHTFHRIIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLRH   90 (164)
T ss_dssp             EETTEEEEEEECTTTCHHHHHHHHHHHHTTT----TTTCBCCEEETTTEEEECCTTSSSSCCCCTTSSCBCCCCCTTCCS
T ss_pred             EeceeEEEEEEcCCCChHHHHHHHHHHhCCC----cccceeeEEeeeeeEeecccccccCCCceeeeccccccccccccc
Confidence            5788999999999999999999999999777    999999999999999999987554444443334333445667889


Q ss_pred             CCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEEcCHHHHHHhhcCCCCC-CCCCCCCeEEEeeeE
Q 024387          192 VGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSR-TDYPKVPCRIINSGE  263 (268)
Q Consensus       192 ~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~VveGmdvL~~I~~~~td~-~~~P~~~I~I~~cGv  263 (268)
                      .++|+++|++.++++++|||||++++.++||++|+|||+|++|||||++|++++++. +++|.++|+|.++.+
T Consensus        91 ~~~~~l~~~~~~~~s~~sqFfI~~~~~~~ld~~~tVFG~V~~G~dvv~~I~~~~~~~~~~~P~~~V~I~~v~i  163 (164)
T d2a2na1          91 DRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITV  163 (164)
T ss_dssp             CSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTTCCBSSCCBEEEEEE
T ss_pred             CccceeehhhcCCCCCcccceecccCccccccceeEEEEecChHHHHHHHHcCCcCCCCCCcCCCcEEEEEEE
Confidence            999999999999999999999999999999999999999999999999999999985 689999999999875

>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=5.3e-38  Score=264.48  Aligned_cols=148  Identities=45%  Similarity=0.678  Sum_probs=128.0

Q ss_pred             CeeeeeEEEEEcCCCChHHHHHHHHHHhcCC-----------CCcccCCCEEEEEEcCceeeeCCCcCCCCCCCccccCC
Q 024387          112 GKPAGRIVMGLFGDVVPKTAENFRALCTAGE-----------KGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGS  180 (268)
Q Consensus       112 ~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~-----------kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~  180 (268)
                      .|+.|+|+||||++.||++|+||++||+.|.           +...|+|+.|||+++++++|+|++.. .+.++.   ..
T Consensus         9 ~T~~G~I~ieL~~d~aP~tv~nF~~L~~~~~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~g~~~~-~~~~~~---~~   84 (171)
T d1w74a_           9 HTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPTG-TGRGGP---GY   84 (171)
T ss_dssp             EETTEEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCSSTTEEEEEEETTTEEEECCTTS-SSSCCS---SC
T ss_pred             EECCEEEEEEEcCCCChHHHHHHHHHHhcCCccccccccccccCceECCeecccccCCceeEcccccC-CCCCCc---cc
Confidence            5778999999999999999999999999541           01129999999999999999999863 333332   22


Q ss_pred             CCCC-CccccccCCCeEEEEecCCCCCCCccceEEecCCCCCCCCceEEEEEE--cCHHHHHHhhcCCCCCCCCCCCCeE
Q 024387          181 SFED-ESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVI--DGMDVVRKLESVETSRTDYPKVPCR  257 (268)
Q Consensus       181 ~~~d-e~~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~~~LDg~~~VFG~Vv--eGmdvL~~I~~~~td~~~~P~~~I~  257 (268)
                      .+++ +...++|.++|+|+|++.++++++|||||++.+.|+||++|+|||+|+  ||||||++|++++++++++|.++|+
T Consensus        85 ~~~~e~~~~~~~~~~g~v~~~~~~~~s~~sqFfIt~~~~p~ld~~~tVFG~Vv~geGmdvl~~I~~~~~~~~~~P~~~i~  164 (171)
T d1w74a_          85 KFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVV  164 (171)
T ss_dssp             CBCCCCCTTCCSCSSSEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEECSHHHHHHHHHHHTSCBCTTSCBSSCCE
T ss_pred             ccccccCCCcCCCCCEEEEEEecCCCCCCcceEeeccCCCccccccEEEEEEeccccHHHHHHHHcCCcCCCCccCCCcE
Confidence            2333 456788999999999999999999999999999999999999999999  5999999999999999999999999


Q ss_pred             EEeeeE
Q 024387          258 IINSGE  263 (268)
Q Consensus       258 I~~cGv  263 (268)
                      |.++.+
T Consensus       165 I~~v~i  170 (171)
T d1w74a_         165 IESITI  170 (171)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999875

>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=8.4e-38  Score=261.98  Aligned_cols=146  Identities=36%  Similarity=0.543  Sum_probs=126.4

Q ss_pred             CeeeeeEEEEEcCCCChHHHHHHHHHHhcCCCCcccCCCEEEEEEcCceeeeCCCcCCCCCCCccccCCCCCCCcc-ccc
Q 024387          112 GKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESF-VLK  190 (268)
Q Consensus       112 ~t~~GrIvIeL~~d~aP~tv~nF~~Lc~~G~kg~gY~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~~de~~-~l~  190 (268)
                      .|+.|+|+||||.+.||++|+||++||+.|+    |+|+.|||++++|++|+|++....+.+   .++.++++|.. .+.
T Consensus         5 ~T~~G~i~ieL~~~~aP~t~~nF~~l~~~g~----Y~g~~fhrv~~~~~iq~G~~~~~~~~~---~~~~~~~~e~~~~~~   77 (164)
T d1lopa_           5 HTNHGDIVIKTFDDKAPETVKNFLDYCREGF----YNNTIFHRVINGFMIQGGGFEPGMKQK---ATKEPIKNEANNGLK   77 (164)
T ss_dssp             EETTEEEEEEECTTTSHHHHHHHHHHHHTTT----TTTEECCEEETTTEEEESSEETTTEEC---CCCCCBCCCCCSSCC
T ss_pred             EeCCeEEEEEEcCCCCHHHHHHHHHHHHccC----cCCceeeEEcCCceeeeeccccCCcCC---ccCCCcccccccccc
Confidence            4788999999999999999999999999777    999999999999999999986544333   23666777754 555


Q ss_pred             cCCCeEEEEecC-CCCCCCccceEEecCC--------CCCCCCceEEEEEEcCHHHHHHhhcCCCCCCC----CCCCCeE
Q 024387          191 HVGPGVLSMANA-GPNTNGSQFFICTVKT--------PWLDNRHVVFGHVIDGMDVVRKLESVETSRTD----YPKVPCR  257 (268)
Q Consensus       191 h~~~G~lsma~~-gp~s~gSqFfItl~~~--------~~LDg~~~VFG~VveGmdvL~~I~~~~td~~~----~P~~~I~  257 (268)
                      | .+|.|+|++. ++++++|||||++.+.        +++|++|+|||+|++|||||++|+++++++.+    +|.++|+
T Consensus        78 h-~~g~l~~~~~~~~~~~~sqFfi~~~~~~~~~~~~~~~~~~~ytvFG~Vv~G~dvl~~I~~~~t~~~~~~~~~P~~~v~  156 (164)
T d1lopa_          78 N-TRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVI  156 (164)
T ss_dssp             C-CTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTSCCCEEEEEEECHHHHHHHHTSCEEEETTEEEEESSCCE
T ss_pred             c-eeeEEEEeccCCCCCccceeeeeccccccccccCCCcCCCceeecCEEeccHHHHHHHHhCCcCCCCCcCCCcCCCeE
Confidence            5 6899999974 7999999999999865        78899999999999999999999999987654    8999999


Q ss_pred             EEeeeEec
Q 024387          258 IINSGELP  265 (268)
Q Consensus       258 I~~cGvL~  265 (268)
                      |.++.+++
T Consensus       157 I~~v~I~e  164 (164)
T d1lopa_         157 IESVTVSE  164 (164)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEEeC
Confidence            99998764