Citrus Sinensis ID: 024391

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
MFQATKDIFREEGLWGFWRGNVPALLMVMPYTAIQFTVLHKLKTFAAGSSKAENHINLSAYLSYVSGALAGCAATVGSYPFDLLRTILASQGEPKVYPTMRSAFVDIISTRGFRGLYAGLSPTLVEIIPYAGLQFGTYDTFKRWTMDWNRIRSSNTSSTGADNNLSSFQLFVCGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPKYGARVEHRAYRNMSDALSRIVQAEGWAGLYKGIVPSTVKAAPAGAVTFVAYEYASDWLESILT
cHHHHHHHHHHccccHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
cHHHHHHHHHHcccHHHHcccHHHHHHHccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccccccccHHHHHHHHHHHcccHHHHccccHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHcccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
MFQATKDIFREeglwgfwrgnvpalLMVMPYTAIQFTVLHKLKtfaagsskaenHINLSAYLSYVSGALAGCAATVGSYPFDLLRTILasqgepkvyptMRSAFVDIISTrgfrglyaglspTLVEIipyaglqfgtydtFKRWTmdwnrirssntsstgadnnlssFQLFVCGLAAGTCAKLVCHPLDVVKKRFqieglqrhpkygarvEHRAYRNMSDALSRIVQAEGWaglykgivpstvkaapagaVTFVAYEYASDWLESILT
MFQATKDifreeglwgFWRGNVPALLMVMPYTAIQFTVLHKLKTFAAGSSKAENHINLSAYLSYVSGALAGCAATVGSYPFDLLRTILASqgepkvypTMRSAFVDIISTRGFRGLYAGLSPTLVEIIPYAGLQFGTYDTFKRWTMDWNRIRSSntsstgadnnLSSFQLFVCGLAAGTCAKLVCHPLDVVKKRfqieglqrhpkygarveHRAYRNMSDALSRIVQAEGWAGLYKGIVPSTVKAAPAGAVTFVAYEYASDWLESILT
MFQATKDIFREEGLWGFWRGNVPALLMVMPYTAIQFTVLHKLKTFAAGSSKAENHINLSAYLSYVSGALAGCAATVGSYPFDLLRTILASQGEPKVYPTMRSAFVDIISTRGFRGLYAGLSPTLVEIIPYAGLQFGTYDTFKRWTMDWNRIRSSNTSSTGADNNLSSFQLFVCGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPKYGARVEHRAYRNMSDALSRIVQAEGWAGLYKGIVPSTVKAAPAGAVTFVAYEYASDWLESILT
******DIFREEGLWGFWRGNVPALLMVMPYTAIQFTVLHKLKTFAAGSSKAENHINLSAYLSYVSGALAGCAATVGSYPFDLLRTILASQGEPKVYPTMRSAFVDIISTRGFRGLYAGLSPTLVEIIPYAGLQFGTYDTFKRWTMDWNRIR***********NLSSFQLFVCGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPKYGARVEHRAYRNMSDALSRIVQAEGWAGLYKGIVPSTVKAAPAGAVTFVAYEYASDWLES***
MFQATKDIFREEGLWGFWRGNVPALLMVMPYTAIQFTVLHKLKTFAAGSS*******LSAYLSYVSGALAGCAATVGSYPFDLLRTILASQGEPKVYPTMRSAFVDIISTRGFRGLYAGLSPTLVEIIPYAGLQFGTYDTFKRWTMDWNRI***********NNLSSFQLFVCGLAAGTCAKLVCHPLDVVKKRFQIEGLQ********VEHRAYRNMSDALSRIVQAEGWAGLYKGIVPSTVKAAPAGAVTFVAYEYASDWLESILT
MFQATKDIFREEGLWGFWRGNVPALLMVMPYTAIQFTVLHKLKTFAAGSSKAENHINLSAYLSYVSGALAGCAATVGSYPFDLLRTILASQGEPKVYPTMRSAFVDIISTRGFRGLYAGLSPTLVEIIPYAGLQFGTYDTFKRWTMDWNRIRSSNTSSTGADNNLSSFQLFVCGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPKYGARVEHRAYRNMSDALSRIVQAEGWAGLYKGIVPSTVKAAPAGAVTFVAYEYASDWLESILT
MFQATKDIFREEGLWGFWRGNVPALLMVMPYTAIQFTVLHKLKTFAAGSSKAENHINLSAYLSYVSGALAGCAATVGSYPFDLLRTILASQGEPKVYPTMRSAFVDIISTRGFRGLYAGLSPTLVEIIPYAGLQFGTYDTFKRWTMDWNR************NNLSSFQLFVCGLAAGTCAKLVCHPLDVVKKRFQIEGLQR**********RAYRNMSDALSRIVQAEGWAGLYKGIVPSTVKAAPAGAVTFVAYEYASDWLESILT
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooo
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MFQATKDIFREEGLWGFWRGNVPALLMVMPYTAIQFTVLHKLKTFAAGSSKAENHINLSAYLSYVSGALAGCAATVGSYPFDLLRTILASQGEPKVYPTMRSAFVDIISTRGFRGLYAGLSPTLVEIIPYAGLQFGTYDTFKRWTMDWNRIRSSNTSSTGADNNLSSFQLFVCGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPKYGARVEHRAYRNMSDALSRIVQAEGWAGLYKGIVPSTVKAAPAGAVTFVAYEYASDWLESILT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query268 2.2.26 [Sep-21-2011]
Q9DAM5318 Mitochondrial thiamine py yes no 0.940 0.792 0.368 8e-42
Q5IS35320 Mitochondrial thiamine py N/A no 0.899 0.753 0.363 2e-41
Q29RM1318 Mitochondrial thiamine py yes no 0.940 0.792 0.345 4e-40
Q9HC21320 Mitochondrial thiamine py yes no 0.899 0.753 0.356 5e-40
Q5NVC1320 Mitochondrial thiamine py yes no 0.899 0.753 0.348 4e-38
A7ER02322 Mitochondrial thiamine py N/A no 0.861 0.717 0.372 1e-37
A6SL61322 Mitochondrial thiamine py N/A no 0.861 0.717 0.368 7e-37
Q7S2H8333 Mitochondrial thiamine py N/A no 0.880 0.708 0.375 2e-35
Q1E7P0319 Mitochondrial thiamine py N/A no 0.869 0.730 0.357 7e-35
Q5AVW1328 Mitochondrial thiamine py yes no 0.910 0.743 0.358 5e-34
>sp|Q9DAM5|TPC_MOUSE Mitochondrial thiamine pyrophosphate carrier OS=Mus musculus GN=Slc25a19 PE=2 SV=1 Back     alignment and function desciption
 Score =  170 bits (431), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 98/266 (36%), Positives = 145/266 (54%), Gaps = 14/266 (5%)

Query: 1   MFQATKDIFREEGLWGFWRGNVPALLMVMPYTAIQFTVLHKLKTFAAGSSKAENHINLSA 60
           +FQA K I +EEG   FW+G+VPA ++ + Y A+QF    +L      ++  + H   SA
Sbjct: 62  IFQAAKQILQEEGPRAFWKGHVPAQILSIGYGAVQFLAFEELTELLYQANLYQTH-QFSA 120

Query: 61  YLSYVSGALAGCAATVGSYPFDLLRTILASQGEPKVYPTMRSAFVDIISTRGFRGLYAGL 120
           +  +V G L+   AT+  +P D+LRT LA+QGEPK+Y  +R A   +  T G    Y GL
Sbjct: 121 H--FVCGGLSAGTATLTVHPVDVLRTRLAAQGEPKIYNNLREAIRTMYKTEGPFVFYKGL 178

Query: 121 SPTLVEIIPYAGLQFGTYDTFKRWTMDWNRIRSSNTSSTGADNNLSSFQLFVCGLAAGTC 180
           +PT++ I PYAGLQF  Y + KR   DW  +   +   TG   NL      +CG  +G  
Sbjct: 179 TPTVIAIFPYAGLQFSCYRSLKR-AYDW--LIPPDGKQTGNLKNL------LCGCGSGVI 229

Query: 181 AKLVCHPLDVVKKRFQIEGLQRHPKYGARVEHRAYRNMSDALSRIVQAEGWAGLYKGIVP 240
           +K   +PLD++KKR Q+ G +       +V  R+YR + D   +++Q EG  G +KG+ P
Sbjct: 230 SKTFTYPLDLIKKRLQVGGFEHARSAFGQV--RSYRGLLDLTQQVLQEEGTRGFFKGLSP 287

Query: 241 STVKAAPAGAVTFVAYEYASDWLESI 266
           S +KAA +    F  YE   +    I
Sbjct: 288 SLMKAALSTGFMFFWYELFCNLFHCI 313
Mitochondrial transporter mediating uptake of thiamine pyrophosphate (ThPP) into mitochondria.
Mus musculus (taxid: 10090)
>sp|Q5IS35|TPC_MACFA Mitochondrial thiamine pyrophosphate carrier OS=Macaca fascicularis GN=SLC25A19 PE=2 SV=1 Back     alignment and function description
>sp|Q29RM1|TPC_BOVIN Mitochondrial thiamine pyrophosphate carrier OS=Bos taurus GN=SLC25A19 PE=2 SV=1 Back     alignment and function description
>sp|Q9HC21|TPC_HUMAN Mitochondrial thiamine pyrophosphate carrier OS=Homo sapiens GN=SLC25A19 PE=1 SV=1 Back     alignment and function description
>sp|Q5NVC1|TPC_PONAB Mitochondrial thiamine pyrophosphate carrier OS=Pongo abelii GN=SLC25A19 PE=2 SV=1 Back     alignment and function description
>sp|A7ER02|TPC1_SCLS1 Mitochondrial thiamine pyrophosphate carrier 1 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=tpc1 PE=3 SV=1 Back     alignment and function description
>sp|A6SL61|TPC1_BOTFB Mitochondrial thiamine pyrophosphate carrier 1 OS=Botryotinia fuckeliana (strain B05.10) GN=tpc1 PE=3 SV=1 Back     alignment and function description
>sp|Q7S2H8|TPC1_NEUCR Mitochondrial thiamine pyrophosphate carrier 1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=tpc-1 PE=3 SV=1 Back     alignment and function description
>sp|Q1E7P0|TPC1_COCIM Mitochondrial thiamine pyrophosphate carrier 1 OS=Coccidioides immitis (strain RS) GN=TPC1 PE=3 SV=1 Back     alignment and function description
>sp|Q5AVW1|TPC1_EMENI Mitochondrial thiamine pyrophosphate carrier 1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=tpc1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query268
224107339339 predicted protein [Populus trichocarpa] 0.876 0.693 0.895 1e-137
224123216329 predicted protein [Populus trichocarpa] 0.869 0.708 0.883 1e-137
356529708328 PREDICTED: mitochondrial thiamine pyroph 0.985 0.804 0.861 1e-136
255551717331 Mitochondrial deoxynucleotide carrier, p 0.861 0.697 0.895 1e-135
356521873331 PREDICTED: mitochondrial thiamine pyroph 0.973 0.788 0.867 1e-134
356556120328 PREDICTED: mitochondrial thiamine pyroph 0.985 0.804 0.850 1e-132
363814342327 uncharacterized protein LOC100805353 [Gl 0.973 0.798 0.864 1e-132
225432282330 PREDICTED: mitochondrial thiamine pyroph 0.996 0.809 0.843 1e-131
15239754339 Mitochondrial substrate carrier family p 0.869 0.687 0.823 1e-129
449450672340 PREDICTED: mitochondrial thiamine pyroph 0.876 0.691 0.824 1e-129
>gi|224107339|ref|XP_002314452.1| predicted protein [Populus trichocarpa] gi|222863492|gb|EEF00623.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 240/268 (89%), Positives = 249/268 (92%)

Query: 1   MFQATKDIFREEGLWGFWRGNVPALLMVMPYTAIQFTVLHKLKTFAAGSSKAENHINLSA 60
           M QATKDIFREEGL GFWRGNVPALLMVMPYTAIQF VLHKLKTFAAGSSK E+HI LS 
Sbjct: 72  MLQATKDIFREEGLPGFWRGNVPALLMVMPYTAIQFAVLHKLKTFAAGSSKTEDHIQLSP 131

Query: 61  YLSYVSGALAGCAATVGSYPFDLLRTILASQGEPKVYPTMRSAFVDIISTRGFRGLYAGL 120
           YLSY SGALAGCAATVGSYPFDLLRTILASQGEPKVYPTMRSAFVDI+ TRGFRGLYAGL
Sbjct: 132 YLSYASGALAGCAATVGSYPFDLLRTILASQGEPKVYPTMRSAFVDIVRTRGFRGLYAGL 191

Query: 121 SPTLVEIIPYAGLQFGTYDTFKRWTMDWNRIRSSNTSSTGADNNLSSFQLFVCGLAAGTC 180
           SPTLVEI+PYAGLQFGTYDTFKRWTM WN  +SS+TSS   D+NLSSFQLF+CGLAAGTC
Sbjct: 192 SPTLVEIVPYAGLQFGTYDTFKRWTMAWNHHKSSSTSSISTDDNLSSFQLFICGLAAGTC 251

Query: 181 AKLVCHPLDVVKKRFQIEGLQRHPKYGARVEHRAYRNMSDALSRIVQAEGWAGLYKGIVP 240
           AKLVCHPLDVVKKRFQIEGLQRHPKYG RVEHRAYRNM DAL RI+Q EGWAGLYKGIVP
Sbjct: 252 AKLVCHPLDVVKKRFQIEGLQRHPKYGGRVEHRAYRNMFDALRRILQTEGWAGLYKGIVP 311

Query: 241 STVKAAPAGAVTFVAYEYASDWLESILT 268
           STVKAAPAGAVTFVAYE+ SDWLESILT
Sbjct: 312 STVKAAPAGAVTFVAYEFTSDWLESILT 339

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224123216|ref|XP_002330367.1| predicted protein [Populus trichocarpa] gi|222871571|gb|EEF08702.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356529708|ref|XP_003533430.1| PREDICTED: mitochondrial thiamine pyrophosphate carrier-like [Glycine max] Back     alignment and taxonomy information
>gi|255551717|ref|XP_002516904.1| Mitochondrial deoxynucleotide carrier, putative [Ricinus communis] gi|223543992|gb|EEF45518.1| Mitochondrial deoxynucleotide carrier, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356521873|ref|XP_003529575.1| PREDICTED: mitochondrial thiamine pyrophosphate carrier-like [Glycine max] Back     alignment and taxonomy information
>gi|356556120|ref|XP_003546375.1| PREDICTED: mitochondrial thiamine pyrophosphate carrier-like [Glycine max] Back     alignment and taxonomy information
>gi|363814342|ref|NP_001242812.1| uncharacterized protein LOC100805353 [Glycine max] gi|255637169|gb|ACU18915.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|225432282|ref|XP_002272682.1| PREDICTED: mitochondrial thiamine pyrophosphate carrier [Vitis vinifera] gi|297736865|emb|CBI26066.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|15239754|ref|NP_199708.1| Mitochondrial substrate carrier family protein [Arabidopsis thaliana] gi|10177187|dbj|BAB10321.1| mitochondrial carrier protein-like [Arabidopsis thaliana] gi|26449838|dbj|BAC42042.1| putative mitochondrial carrier protein [Arabidopsis thaliana] gi|30017309|gb|AAP12888.1| At5g48970 [Arabidopsis thaliana] gi|332008368|gb|AED95751.1| Mitochondrial substrate carrier family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449450672|ref|XP_004143086.1| PREDICTED: mitochondrial thiamine pyrophosphate carrier-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query268
TAIR|locus:2154374339 AT5G48970 [Arabidopsis thalian 0.992 0.784 0.823 6.9e-118
TAIR|locus:2089453335 AT3G21390 "AT3G21390" [Arabido 1.0 0.8 0.795 7.1e-116
UNIPROTKB|E1C309309 SLC25A19 "Uncharacterized prot 0.906 0.786 0.377 3.3e-40
MGI|MGI:1914533318 Slc25a19 "solute carrier famil 0.906 0.764 0.381 5.3e-40
RGD|1359554318 Slc25a19 "solute carrier famil 0.906 0.764 0.381 1.1e-39
UNIPROTKB|Q29RM1318 SLC25A19 "Mitochondrial thiami 0.902 0.761 0.360 1.3e-38
UNIPROTKB|Q9HC21320 SLC25A19 "Mitochondrial thiami 0.910 0.762 0.368 2.6e-38
UNIPROTKB|E2RFK6318 SLC25A19 "Uncharacterized prot 0.906 0.764 0.377 4.3e-38
UNIPROTKB|C8C419318 SLC25A19 "Solute carrier famil 0.902 0.761 0.360 2.4e-37
ZFIN|ZDB-GENE-050417-292313 slc25a19 "solute carrier famil 0.895 0.766 0.370 6.3e-37
TAIR|locus:2154374 AT5G48970 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1161 (413.8 bits), Expect = 6.9e-118, P = 6.9e-118
 Identities = 219/266 (82%), Positives = 238/266 (89%)

Query:     1 MFQATKDIFREEGLWGFWRGNVPALLMVMPYTAIQFTVLHKLKTFAAGSSKAENHINLSA 60
             M QATKDIFREEG  GFWRGNVPALLMVMPYT+IQFTVLHKLK+FA+GS+K E+HI+LS 
Sbjct:    72 MVQATKDIFREEGFRGFWRGNVPALLMVMPYTSIQFTVLHKLKSFASGSTKTEDHIHLSP 131

Query:    61 YLSYVSGALAGCAATVGSYPFDLLRTILASQGEPKVYPTMRSAFVDIISTRGFRGLYAGL 120
             YLS+VSGALAGCAAT+GSYPFDLLRTILASQGEPKVYPTMRSAFVDII +RG RGLY GL
Sbjct:   132 YLSFVSGALAGCAATLGSYPFDLLRTILASQGEPKVYPTMRSAFVDIIQSRGIRGLYNGL 191

Query:   121 SPTLVEIIPYAGLQFGTYDTFKRWTMDWNRIRSSNTSSTGADNNLSSFQLFVCGLAAGTC 180
             +PTLVEI+PYAGLQFGTYD FKRW MDWNR + S+      D NLSSFQLF+CGL AGT 
Sbjct:   192 TPTLVEIVPYAGLQFGTYDMFKRWMMDWNRYKLSSKIPINVDTNLSSFQLFICGLGAGTS 251

Query:   181 AKLVCHPLDVVKKRFQIEGLQRHPKYGARVEHRAYRNMSDALSRIVQAEGWAGLYKGIVP 240
             AKLVCHPLDVVKKRFQIEGLQRHP+YGARVE RAYRNM D L +I+ +EGW GLYKGIVP
Sbjct:   252 AKLVCHPLDVVKKRFQIEGLQRHPRYGARVERRAYRNMLDGLRQIMISEGWHGLYKGIVP 311

Query:   241 STVKAAPAGAVTFVAYEYASDWLESI 266
             STVKAAPAGAVTFVAYE+ SDWLESI
Sbjct:   312 STVKAAPAGAVTFVAYEFTSDWLESI 337
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0005743 "mitochondrial inner membrane" evidence=ISS
GO:0006810 "transport" evidence=ISS
GO:0006839 "mitochondrial transport" evidence=ISS
GO:0030974 "thiamine pyrophosphate transport" evidence=IGI
GO:0090422 "thiamine pyrophosphate transporter activity" evidence=IGI
TAIR|locus:2089453 AT3G21390 "AT3G21390" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E1C309 SLC25A19 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:1914533 Slc25a19 "solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1359554 Slc25a19 "solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q29RM1 SLC25A19 "Mitochondrial thiamine pyrophosphate carrier" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9HC21 SLC25A19 "Mitochondrial thiamine pyrophosphate carrier" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RFK6 SLC25A19 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|C8C419 SLC25A19 "Solute carrier family 25 member 19" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050417-292 slc25a19 "solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.132.79.1
hypothetical protein (329 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query268
pfam0015396 pfam00153, Mito_carr, Mitochondrial carrier protei 1e-23
pfam0015396 pfam00153, Mito_carr, Mitochondrial carrier protei 8e-22
PTZ00169300 PTZ00169, PTZ00169, ADP/ATP transporter on adenyla 2e-17
pfam0015396 pfam00153, Mito_carr, Mitochondrial carrier protei 2e-09
PTZ00168259 PTZ00168, PTZ00168, mitochondrial carrier protein; 4e-04
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein Back     alignment and domain information 
 Score = 91.5 bits (228), Expect = 1e-23
 Identities = 36/101 (35%), Positives = 49/101 (48%), Gaps = 9/101 (8%)

Query: 163 NNLSSFQLFVCGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPKYGARVEHRAYRNMSDAL 222
           + LS     + G  AG  A  V +PLDVVK R Q           A    R Y+ + D  
Sbjct: 1   SPLSFLASLLAGGIAGAIAATVTYPLDVVKTRLQS---------SAAGGSRKYKGILDCF 51

Query: 223 SRIVQAEGWAGLYKGIVPSTVKAAPAGAVTFVAYEYASDWL 263
            +I + EG  GLYKG++P+ ++ APA A+ F  YE     L
Sbjct: 52  KKIYKEEGIRGLYKGLLPNLLRVAPAAAIYFGTYETLKKLL 92

Length = 96
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein Back     alignment and domain information
>gnl|CDD|240302 PTZ00169, PTZ00169, ADP/ATP transporter on adenylate translocase; Provisional Back     alignment and domain information
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein Back     alignment and domain information
>gnl|CDD|185494 PTZ00168, PTZ00168, mitochondrial carrier protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 268
KOG0752320 consensus Mitochondrial solute carrier protein [En 100.0
KOG0764299 consensus Mitochondrial FAD carrier protein [Energ 100.0
KOG0753317 consensus Mitochondrial fatty acid anion carrier p 100.0
PTZ00169300 ADP/ATP transporter on adenylate translocase; Prov 100.0
KOG0757319 consensus Mitochondrial carrier protein - Rim2p/Mr 100.0
KOG0760302 consensus Mitochondrial carrier protein MRS3/4 [En 100.0
KOG0758297 consensus Mitochondrial carnitine-acylcarnitine ca 100.0
KOG0759286 consensus Mitochondrial oxoglutarate/malate carrie 100.0
KOG0762311 consensus Mitochondrial carrier protein [Energy pr 100.0
KOG0754294 consensus Mitochondrial oxodicarboxylate carrier p 100.0
PTZ00168259 mitochondrial carrier protein; Provisional 100.0
KOG0768323 consensus Mitochondrial carrier protein PET8 [Ener 100.0
KOG0761361 consensus Mitochondrial carrier protein CGI-69 [En 100.0
KOG0751694 consensus Mitochondrial aspartate/glutamate carrie 100.0
KOG0749298 consensus Mitochondrial ADP/ATP carrier proteins [ 100.0
KOG0764 299 consensus Mitochondrial FAD carrier protein [Energ 100.0
KOG0766297 consensus Predicted mitochondrial carrier protein 100.0
KOG0036463 consensus Predicted mitochondrial carrier protein 100.0
KOG0765333 consensus Predicted mitochondrial carrier protein 100.0
KOG0756299 consensus Mitochondrial tricarboxylate/dicarboxyla 100.0
KOG0763301 consensus Mitochondrial ornithine transporter [Ene 100.0
KOG0770353 consensus Predicted mitochondrial carrier protein 100.0
PTZ00169300 ADP/ATP transporter on adenylate translocase; Prov 100.0
KOG0752 320 consensus Mitochondrial solute carrier protein [En 100.0
KOG0750304 consensus Mitochondrial solute carrier protein [En 100.0
KOG0769308 consensus Predicted mitochondrial carrier protein 100.0
KOG0755320 consensus Mitochondrial oxaloacetate carrier prote 100.0
KOG0757 319 consensus Mitochondrial carrier protein - Rim2p/Mr 100.0
KOG0758297 consensus Mitochondrial carnitine-acylcarnitine ca 100.0
KOG0753317 consensus Mitochondrial fatty acid anion carrier p 100.0
KOG0762 311 consensus Mitochondrial carrier protein [Energy pr 100.0
KOG0760 302 consensus Mitochondrial carrier protein MRS3/4 [En 100.0
KOG0767333 consensus Mitochondrial phosphate carrier protein 100.0
PTZ00168259 mitochondrial carrier protein; Provisional 100.0
KOG0754294 consensus Mitochondrial oxodicarboxylate carrier p 99.98
KOG0759286 consensus Mitochondrial oxoglutarate/malate carrie 99.98
KOG0770 353 consensus Predicted mitochondrial carrier protein 99.97
KOG0761 361 consensus Mitochondrial carrier protein CGI-69 [En 99.97
KOG0769 308 consensus Predicted mitochondrial carrier protein 99.96
KOG0751 694 consensus Mitochondrial aspartate/glutamate carrie 99.96
KOG0766 297 consensus Predicted mitochondrial carrier protein 99.95
KOG0765333 consensus Predicted mitochondrial carrier protein 99.95
KOG0036463 consensus Predicted mitochondrial carrier protein 99.94
KOG0767 333 consensus Mitochondrial phosphate carrier protein 99.94
KOG0768 323 consensus Mitochondrial carrier protein PET8 [Ener 99.94
KOG0755320 consensus Mitochondrial oxaloacetate carrier prote 99.93
KOG0763301 consensus Mitochondrial ornithine transporter [Ene 99.93
KOG1519297 consensus Predicted mitochondrial carrier protein 99.92
KOG0749298 consensus Mitochondrial ADP/ATP carrier proteins [ 99.91
KOG2745321 consensus Mitochondrial carrier protein [General f 99.9
KOG0750304 consensus Mitochondrial solute carrier protein [En 99.9
KOG0756299 consensus Mitochondrial tricarboxylate/dicarboxyla 99.88
PF0015395 Mito_carr: Mitochondrial carrier protein; InterPro 99.79
PF0015395 Mito_carr: Mitochondrial carrier protein; InterPro 99.75
KOG2745321 consensus Mitochondrial carrier protein [General f 99.73
KOG2954427 consensus Mitochondrial carrier protein [General f 99.67
KOG1519297 consensus Predicted mitochondrial carrier protein 99.29
KOG2954427 consensus Mitochondrial carrier protein [General f 98.79
>KOG0752 consensus Mitochondrial solute carrier protein [Energy production and conversion] Back     alignment and domain information 
Probab=100.00  E-value=1e-52  Score=341.61  Aligned_cols=246  Identities=44%  Similarity=0.774  Sum_probs=217.3

Q ss_pred             ChHHHHHHHHhcCcccccccchhhhhhhcchhhHHHHHhHHHHHHHccCCCccccCChhHHHHHHHHHHHHHHHHHhccc
Q 024391            1 MFQATKDIFREEGLWGFWRGNVPALLMVMPYTAIQFTVLHKLKTFAAGSSKAENHINLSAYLSYVSGALAGCAATVGSYP   80 (268)
Q Consensus         1 ~~~~~~~i~~~eG~~~l~~G~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~P   80 (268)
                      +++.+++|+++||++|||||+.+.+++.+|+.++.|.+||..++.....++.   ...++..+++||++||++++++++|
T Consensus        70 ~~~~~~~I~~eEG~~g~wkGn~~~~~r~~pY~avqf~aye~~k~~~~~~~~~---~~~~~~~~l~aGalAG~~a~~~tyP  146 (320)
T KOG0752|consen   70 VIQAFKSIYREEGLRGFWKGNGPAQIRIIPYGAVQFSAYEQYKKLVLGVDPN---GSLSPLVRLVAGALAGMTATLATYP  146 (320)
T ss_pred             HHHHHHHHHHHhchhhhhcCcccceeeeeecchhhhhHHHHhhhhhhccCcc---cccchhHHHHHHHHHHHHHHHhcCc
Confidence            3688999999999999999999999999999999999999999865443221   1667888999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCCcHHHHHHHHHhhhCccccccchhHHHHhHhhhhhhHHHHHHHHHHHHhhhhhcccCCCCCCC
Q 024391           81 FDLLRTILASQGEPKVYPTMRSAFVDIISTRGFRGLYAGLSPTLVEIIPYAGLQFGTYDTFKRWTMDWNRIRSSNTSSTG  160 (268)
Q Consensus        81 ld~ik~r~q~~~~~~~~~~~~~~~~~i~~~~G~~gly~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (268)
                      ||++|+|+.++.+...|++..+++++|+++||++|||||+.|++++.+|+.++.|.+||.+|++.....          .
T Consensus       147 LDlvRtRLa~q~~~~~y~~l~~a~~~I~~~eGi~gfYrGl~ptllgi~Pyag~~F~~Yd~lk~~~~~~~----------~  216 (320)
T KOG0752|consen  147 LDLLRTRLAVQGELKVYRGLLHAFKTIYREEGIRGFYRGLGPTLLGIAPYAGINFFAYDTLKKWQYLKS----------S  216 (320)
T ss_pred             HHHhhhheeeecccccCCcHHHHHHHHHHhcchhhhhcCcchhhheehhhhhhHHHHHHHHHHhhcccc----------c
Confidence            999999999997766899999999999999999999999999999999999999999999999611110          0


Q ss_pred             CCCCcchHHHHHHHHHHhhhhhhhccchhHHHHHHHhcccCCCCCccccccccccCCHHHHHHHHHHhhchhhhccchhh
Q 024391          161 ADNNLSSFQLFVCGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPKYGARVEHRAYRNMSDALSRIVQAEGWAGLYKGIVP  240 (268)
Q Consensus       161 ~~~~~~~~~~~~~~~~a~~~~~~~~~P~d~v~~r~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~gly~G~~~  240 (268)
                      .+...+.+..+++|++||+++..++||||+||+|||+.+.....+      ..++.+++||+++|+++||++|||||+.+
T Consensus       217 ~~~~~~~~~~l~~GalAG~~aqti~yPlD~vRrrmQ~~~~~~~~~------~~~~~~~~~~~~~i~~~EG~~gLYkGl~p  290 (320)
T KOG0752|consen  217 GNKELSNFERLLCGALAGAVAQTITYPLDTVRRRMQLGGLKYFGG------GFRYKGVLDAFRQIVKTEGVKGLYKGLSP  290 (320)
T ss_pred             ccchhhhHHHHHHHHHHHHHHhhhcccHHHHHHHHhccCcccccc------ccccccHHHHHHHHHHHhhhhhhhccccH
Confidence            113567788999999999999999999999999999998642221      23458999999999999999999999999


Q ss_pred             hhhhcccchhHHHHHHHHHHHHHHh
Q 024391          241 STVKAAPAGAVTFVAYEYASDWLES  265 (268)
Q Consensus       241 ~~~~~~~~~~i~~~~ye~~~~~l~~  265 (268)
                      +++..+|..++.|.+||.+|+++..
T Consensus       291 ~~lK~~P~~ai~F~~Ye~~k~~l~~  315 (320)
T KOG0752|consen  291 NLLKVVPSVAISFTTYEILKDLLRL  315 (320)
T ss_pred             HHHHhcccceeeeehHHHHHHHhhc
Confidence            9999999999999999999987754

>KOG0764 consensus Mitochondrial FAD carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0753 consensus Mitochondrial fatty acid anion carrier protein/Uncoupling protein [Energy production and conversion] Back     alignment and domain information
>PTZ00169 ADP/ATP transporter on adenylate translocase; Provisional Back     alignment and domain information
>KOG0757 consensus Mitochondrial carrier protein - Rim2p/Mrs12p [Energy production and conversion] Back     alignment and domain information
>KOG0760 consensus Mitochondrial carrier protein MRS3/4 [Energy production and conversion] Back     alignment and domain information
>KOG0758 consensus Mitochondrial carnitine-acylcarnitine carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0759 consensus Mitochondrial oxoglutarate/malate carrier proteins [Energy production and conversion] Back     alignment and domain information
>KOG0762 consensus Mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0754 consensus Mitochondrial oxodicarboxylate carrier protein [Energy production and conversion] Back     alignment and domain information
>PTZ00168 mitochondrial carrier protein; Provisional Back     alignment and domain information
>KOG0768 consensus Mitochondrial carrier protein PET8 [Energy production and conversion] Back     alignment and domain information
>KOG0761 consensus Mitochondrial carrier protein CGI-69 [Energy production and conversion] Back     alignment and domain information
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion] Back     alignment and domain information
>KOG0749 consensus Mitochondrial ADP/ATP carrier proteins [Energy production and conversion] Back     alignment and domain information
>KOG0764 consensus Mitochondrial FAD carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0766 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG0765 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0756 consensus Mitochondrial tricarboxylate/dicarboxylate carrier proteins [Energy production and conversion] Back     alignment and domain information
>KOG0763 consensus Mitochondrial ornithine transporter [Energy production and conversion] Back     alignment and domain information
>KOG0770 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>PTZ00169 ADP/ATP transporter on adenylate translocase; Provisional Back     alignment and domain information
>KOG0752 consensus Mitochondrial solute carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0750 consensus Mitochondrial solute carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0769 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0755 consensus Mitochondrial oxaloacetate carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0757 consensus Mitochondrial carrier protein - Rim2p/Mrs12p [Energy production and conversion] Back     alignment and domain information
>KOG0758 consensus Mitochondrial carnitine-acylcarnitine carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0753 consensus Mitochondrial fatty acid anion carrier protein/Uncoupling protein [Energy production and conversion] Back     alignment and domain information
>KOG0762 consensus Mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0760 consensus Mitochondrial carrier protein MRS3/4 [Energy production and conversion] Back     alignment and domain information
>KOG0767 consensus Mitochondrial phosphate carrier protein [Energy production and conversion] Back     alignment and domain information
>PTZ00168 mitochondrial carrier protein; Provisional Back     alignment and domain information
>KOG0754 consensus Mitochondrial oxodicarboxylate carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0759 consensus Mitochondrial oxoglutarate/malate carrier proteins [Energy production and conversion] Back     alignment and domain information
>KOG0770 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0761 consensus Mitochondrial carrier protein CGI-69 [Energy production and conversion] Back     alignment and domain information
>KOG0769 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion] Back     alignment and domain information
>KOG0766 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0765 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG0767 consensus Mitochondrial phosphate carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0768 consensus Mitochondrial carrier protein PET8 [Energy production and conversion] Back     alignment and domain information
>KOG0755 consensus Mitochondrial oxaloacetate carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0763 consensus Mitochondrial ornithine transporter [Energy production and conversion] Back     alignment and domain information
>KOG1519 consensus Predicted mitochondrial carrier protein [General function prediction only] Back     alignment and domain information
>KOG0749 consensus Mitochondrial ADP/ATP carrier proteins [Energy production and conversion] Back     alignment and domain information
>KOG2745 consensus Mitochondrial carrier protein [General function prediction only] Back     alignment and domain information
>KOG0750 consensus Mitochondrial solute carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0756 consensus Mitochondrial tricarboxylate/dicarboxylate carrier proteins [Energy production and conversion] Back     alignment and domain information
>PF00153 Mito_carr: Mitochondrial carrier protein; InterPro: IPR018108 A variety of substrate carrier proteins that are involved in energy transfer are found in the inner mitochondrial membrane or integral to the membrane of other eukaryotic organelles such as the peroxisome [, , , , , ] Back     alignment and domain information
>PF00153 Mito_carr: Mitochondrial carrier protein; InterPro: IPR018108 A variety of substrate carrier proteins that are involved in energy transfer are found in the inner mitochondrial membrane or integral to the membrane of other eukaryotic organelles such as the peroxisome [, , , , , ] Back     alignment and domain information
>KOG2745 consensus Mitochondrial carrier protein [General function prediction only] Back     alignment and domain information
>KOG2954 consensus Mitochondrial carrier protein [General function prediction only] Back     alignment and domain information
>KOG1519 consensus Predicted mitochondrial carrier protein [General function prediction only] Back     alignment and domain information
>KOG2954 consensus Mitochondrial carrier protein [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query268
1okc_A297 Structure Of Mitochondrial AdpATP CARRIER IN COMPLE 3e-14
2lck_A 303 Structure Of The Mitochondrial Uncoupling Protein 2 2e-11
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH Carboxyatractyloside Length = 297 Back     alignment and structure 
Iteration: 1

 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 99/254 (38%), Gaps = 30/254 (11%)
Query: 10  REEGLWGFWRGNVPALLMVMPYTAIQFTVLHKLKTFAAGSSKAENHINLSAYLS--YVSG 67
           +E+G   FWRGN+  ++   P  A+ F    K K    G    + H     Y +    SG
Sbjct: 62  KEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGG--VDRHKQFWRYFAGNLASG 119
Query: 68  ALAGCAATVGSYPFDLLRTILASQ----GEPKVYPTMRSAFVDIISTRGFRGLYAGLSPT 123
             AG  +    YP D  RT LA+        + +  + +    I  + G RGLY G + +
Sbjct: 120 GAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVS 179
Query: 124 LVEIIPYAGLQFGTYDTFKRWTMDWNRIRSSNTSSTGADNNLSSFQLFVCGLAAGTCAKL 183
           +  II Y    FG YDT K    D                N+     ++        A L
Sbjct: 180 VQGIIIYRAAYFGVYDTAKGMLPD--------------PKNVHIIVSWMIAQTVTAVAGL 225
Query: 184 VCHPLDVVKKRFQIEGLQRHPKYGARVEHRAYRNMSDALSRIVQAEGWAGLYKGIVPSTV 243
           V +P D V++R  ++  ++    GA +    Y    D   +I + EG    +KG   S V
Sbjct: 226 VSYPFDTVRRRMMMQSGRK----GADI---MYTGTVDCWRKIAKDEGPKAFFKG-AWSNV 277
Query: 244 KAAPAGAVTFVAYE 257
                GA   V Y+
Sbjct: 278 LRGMGGAFVLVLYD 291
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2 Determined By Nmr Molecular Fragment Replacement Length = 303 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query268
1okc_A297 ADP, ATP carrier protein heart isoform T1; mitocho 3e-82
1okc_A297 ADP, ATP carrier protein heart isoform T1; mitocho 3e-34
1okc_A 297 ADP, ATP carrier protein heart isoform T1; mitocho 7e-18
2lck_A303 Mitochondrial uncoupling protein 2; membrane prote 1e-48
2lck_A 303 Mitochondrial uncoupling protein 2; membrane prote 1e-42
2lck_A303 Mitochondrial uncoupling protein 2; membrane prote 1e-20
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Length = 297 Back     alignment and structure
 Score =  247 bits (634), Expect = 3e-82
 Identities = 62/267 (23%), Positives = 98/267 (36%), Gaps = 26/267 (9%)

Query: 1   MFQATKDIFREEGLWGFWRGNVPALLMVMPYTAIQFTVLHKLKTFAAGSSKAENHINLSA 60
           +      I +E+G   FWRGN+  ++   P  A+ F    K K    G            
Sbjct: 53  IIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYF 112

Query: 61  YLSYVSGALAGCAATVGSYPFDLLRTILASQ----GEPKVYPTMRSAFVDIISTRGFRGL 116
             +  SG  AG  +    YP D  RT LA+        + +  + +    I  + G RGL
Sbjct: 113 AGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGL 172

Query: 117 YAGLSPTLVEIIPYAGLQFGTYDTFKRWTMDWNRIRSSNTSSTGADNNLSSFQLFVCGLA 176
           Y G + ++  II Y    FG YDT K    D                N+     ++    
Sbjct: 173 YQGFNVSVQGIIIYRAAYFGVYDTAKGMLPD--------------PKNVHIIVSWMIAQT 218

Query: 177 AGTCAKLVCHPLDVVKKRFQIEGLQRHPKYGARVEHRAYRNMSDALSRIVQAEGWAGLYK 236
               A LV +P D V++R  ++        G +     Y    D   +I + EG    +K
Sbjct: 219 VTAVAGLVSYPFDTVRRRMMMQS-------GRKGADIMYTGTVDCWRKIAKDEGPKAFFK 271

Query: 237 GIVPSTVKAAPAGAVTFVAYEYASDWL 263
           G   + ++    GA   V Y+    ++
Sbjct: 272 GAWSNVLRGMG-GAFVLVLYDEIKKFV 297
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Length = 297 Back     alignment and structure
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Length = 297 Back     alignment and structure
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Length = 303 Back     alignment and structure
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Length = 303 Back     alignment and structure
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Length = 303 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query268
1okc_A297 ADP, ATP carrier protein heart isoform T1; mitocho 100.0
2lck_A303 Mitochondrial uncoupling protein 2; membrane prote 100.0
1okc_A297 ADP, ATP carrier protein heart isoform T1; mitocho 100.0
2lck_A 303 Mitochondrial uncoupling protein 2; membrane prote 100.0
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Back     alignment and structure
Probab=100.00  E-value=2.4e-49  Score=330.68  Aligned_cols=240  Identities=25%  Similarity=0.439  Sum_probs=204.1

Q ss_pred             hHHHHHHHHhcCcccccccchhhhhhhcchhhHHHHHhHHHHHHHccCCCccccCChhHHHHHHHHHHHHHHHHHhcccH
Q 024391            2 FQATKDIFREEGLWGFWRGNVPALLMVMPYTAIQFTVLHKLKTFAAGSSKAENHINLSAYLSYVSGALAGCAATVGSYPF   81 (268)
Q Consensus         2 ~~~~~~i~~~eG~~~l~~G~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~Pl   81 (268)
                      ++++++++++||++|||||+.+++++.++..+++|.+||.+++.+......++....+....+++|++|++++.++++|+
T Consensus        54 ~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pl  133 (297)
T 1okc_A           54 IDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPL  133 (297)
T ss_dssp             HHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccchhheecccHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence            68999999999999999999999999999999999999999995443221111112345778999999999999999999


Q ss_pred             HHHHHHHhhcCC----CCCCCcHHHHHHHHHhhhCccccccchhHHHHhHhhhhhhHHHHHHHHHHHHhhhhhcccCCCC
Q 024391           82 DLLRTILASQGE----PKVYPTMRSAFVDIISTRGFRGLYAGLSPTLVEIIPYAGLQFGTYDTFKRWTMDWNRIRSSNTS  157 (268)
Q Consensus        82 d~ik~r~q~~~~----~~~~~~~~~~~~~i~~~~G~~gly~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (268)
                      |++|+|+|++..    ...|++.++++++++++||++|||||+.+.+++++++.+++|.+||.+|+.+.+..        
T Consensus       134 d~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~--------  205 (297)
T 1okc_A          134 DFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPK--------  205 (297)
T ss_dssp             HHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGG--------
T ss_pred             HHHHHHHhccccCCCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCC--------
Confidence            999999999843    35689999999999999999999999999999999999999999999998654321        


Q ss_pred             CCCCCCCcchHHHHHHHHHHhhhhhhhccchhHHHHHHHhcccCCCCCccccccccccCCHHHHHHHHHHhhchhhhccc
Q 024391          158 STGADNNLSSFQLFVCGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPKYGARVEHRAYRNMSDALSRIVQAEGWAGLYKG  237 (268)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~P~d~v~~r~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~gly~G  237 (268)
                            ..+....+++|++||+++.++++|+|+||+|+|.+.....       ....|+++++|+++|+++||++|||||
T Consensus       206 ------~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~~-------~~~~y~~~~~~~~~i~~~eG~~glyrG  272 (297)
T 1okc_A          206 ------NVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKG-------ADIMYTGTVDCWRKIAKDEGPKAFFKG  272 (297)
T ss_dssp             ------CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCG-------GGCSCSSHHHHHHHHHHHHCGGGGGTT
T ss_pred             ------CccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCC-------CCCCCCCHHHHHHHHHHHcCcCeEecc
Confidence                  2356778899999999999999999999999999753211       134689999999999999999999999


Q ss_pred             hhhhhhhcccchhHHHHHHHHHHHHH
Q 024391          238 IVPSTVKAAPAGAVTFVAYEYASDWL  263 (268)
Q Consensus       238 ~~~~~~~~~~~~~i~~~~ye~~~~~l  263 (268)
                      +.++++|. +..+++|.+||.+|+++
T Consensus       273 ~~~~~~r~-~~~~~~f~~ye~~k~~l  297 (297)
T 1okc_A          273 AWSNVLRG-MGGAFVLVLYDEIKKFV  297 (297)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHTC----
T ss_pred             hHHHHHhh-ccceeeehHHHHHHhhC
Confidence            99999996 57899999999998764
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Back     alignment and structure
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Back     alignment and structure
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 268
d1okca_292 f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos ta 8e-23
d1okca_292 f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos ta 1e-12
d1okca_ 292 f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos ta 3e-09
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Length = 292 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Mitochondrial carrier
superfamily: Mitochondrial carrier
family: Mitochondrial carrier
domain: ADP,ATP carrier protein
species: Cow (Bos taurus), heart isoform t1 [TaxId: 9913]

 Score = 92.9 bits (229), Expect = 8e-23
 Identities = 61/262 (23%), Positives = 96/262 (36%), Gaps = 26/262 (9%)

Query: 1   MFQATKDIFREEGLWGFWRGNVPALLMVMPYTAIQFTVLHKLKTFAAGSSKAENHINLSA 60
           +      I +E+G   FWRGN+  ++   P  A+ F    K K    G            
Sbjct: 52  IIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYF 111

Query: 61  YLSYVSGALAGCAATVGSYPFDLLRTILASQGEP----KVYPTMRSAFVDIISTRGFRGL 116
             +  SG  AG  +    YP D  RT LA+        + +  + +    I  + G RGL
Sbjct: 112 AGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGL 171

Query: 117 YAGLSPTLVEIIPYAGLQFGTYDTFKRWTMDWNRIRSSNTSSTGADNNLSSFQLFVCGLA 176
           Y G + ++  II Y    FG YDT K    D   +    +              ++    
Sbjct: 172 YQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVS--------------WMIAQT 217

Query: 177 AGTCAKLVCHPLDVVKKRFQIEGLQRHPKYGARVEHRAYRNMSDALSRIVQAEGWAGLYK 236
               A LV +P D V++R  ++        G +     Y    D   +I + EG    +K
Sbjct: 218 VTAVAGLVSYPFDTVRRRMMMQS-------GRKGADIMYTGTVDCWRKIAKDEGPKAFFK 270

Query: 237 GIVPSTVKAAPAGAVTFVAYEY 258
           G   + ++    GA   V Y+ 
Sbjct: 271 GAWSNVLRGMG-GAFVLVLYDE 291
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Length = 292 Back     information, alignment and structure
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Length = 292 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query268
d1okca_292 ADP,ATP carrier protein {Cow (Bos taurus), heart i 100.0
d1okca_292 ADP,ATP carrier protein {Cow (Bos taurus), heart i 100.0
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Mitochondrial carrier
superfamily: Mitochondrial carrier
family: Mitochondrial carrier
domain: ADP,ATP carrier protein
species: Cow (Bos taurus), heart isoform t1 [TaxId: 9913]

Probab=100.00  E-value=3.5e-44  Score=296.89  Aligned_cols=236  Identities=26%  Similarity=0.438  Sum_probs=209.6

Q ss_pred             hHHHHHHHHhcCcccccccchhhhhhhcchhhHHHHHhHHHHHHHccCCCccccCChhHHHHHHHHHHHHHHHHHhcccH
Q 024391            2 FQATKDIFREEGLWGFWRGNVPALLMVMPYTAIQFTVLHKLKTFAAGSSKAENHINLSAYLSYVSGALAGCAATVGSYPF   81 (268)
Q Consensus         2 ~~~~~~i~~~eG~~~l~~G~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~Pl   81 (268)
                      ++++++++++||+++||||+.+.++...+...++|.+|+.++..+.......+.........+.+|.+|++++.++.+|+
T Consensus        53 ~~~~~~i~~~~G~~~ly~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~P~  132 (292)
T d1okca_          53 IDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPL  132 (292)
T ss_dssp             HHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhhhhhccchhhhhhhcccchhHHHHHHHHHHHhcccccccccchhhhhhhhhhhhhhhhHHhhhhhh
Confidence            68899999999999999999999999999999999999999999988765545555666778899999999999999999


Q ss_pred             HHHHHHHhhcCC----CCCCCcHHHHHHHHHhhhCccccccchhHHHHhHhhhhhhHHHHHHHHHHHHhhhhhcccCCCC
Q 024391           82 DLLRTILASQGE----PKVYPTMRSAFVDIISTRGFRGLYAGLSPTLVEIIPYAGLQFGTYDTFKRWTMDWNRIRSSNTS  157 (268)
Q Consensus        82 d~ik~r~q~~~~----~~~~~~~~~~~~~i~~~~G~~gly~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (268)
                      |++|+|+|.+..    ...+.+..+.+++++++||+++||+|+.+.+++++++.+++|..||.+|+.+.+..        
T Consensus       133 ~~ik~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~G~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~--------  204 (292)
T d1okca_         133 DFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPK--------  204 (292)
T ss_dssp             HHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGG--------
T ss_pred             hhhheeeeccccccccccccccHHHHHHHhhhccchhhhhccccccccceehHhhhhhhhccchhhhccccc--------
Confidence            999999999843    34678999999999999999999999999999999999999999999998764432        


Q ss_pred             CCCCCCCcchHHHHHHHHHHhhhhhhhccchhHHHHHHHhcccCCCCCccccccccccCCHHHHHHHHHHhhchhhhccc
Q 024391          158 STGADNNLSSFQLFVCGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPKYGARVEHRAYRNMSDALSRIVQAEGWAGLYKG  237 (268)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~P~d~v~~r~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~gly~G  237 (268)
                            .......++++++++++++++++|+|+||+|||.+.....       ....|.++++|+++++++||++|||||
T Consensus       205 ------~~~~~~~~~~~~~~~~~a~~~t~P~dvvktR~q~~~~~~~-------~~~~y~~~~~~~~~i~~~eG~~~lyrG  271 (292)
T d1okca_         205 ------NVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKG-------ADIMYTGTVDCWRKIAKDEGPKAFFKG  271 (292)
T ss_dssp             ------CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCG-------GGCSCSSHHHHHHHHHHHHCGGGGGTT
T ss_pred             ------ccchHHHHHHHHHHHHHHhhccccHHHHHHHHHhcCCCCC-------CCCCCCCHHHHHHHHHHhcCcCccccc
Confidence                  4567788999999999999999999999999999873221       234689999999999999999999999


Q ss_pred             hhhhhhhcccchhHHHHHHHHH
Q 024391          238 IVPSTVKAAPAGAVTFVAYEYA  259 (268)
Q Consensus       238 ~~~~~~~~~~~~~i~~~~ye~~  259 (268)
                      +.+++++.+| .++.|.+||.+
T Consensus       272 ~~~~~~r~i~-~~i~~~~ye~l  292 (292)
T d1okca_         272 AWSNVLRGMG-GAFVLVLYDEI  292 (292)
T ss_dssp             HHHHHHHHHH-HHHHHHHHHTC
T ss_pred             HHHHHHHHHH-HHhhhhHhhcC
Confidence            9999999865 68899999963
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Back     information, alignment and structure