Citrus Sinensis ID: 024397

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
MATDLQMSPQLEQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEKQSMIKELNSYVALRKTYMNSLGNKKVELFDMGAGVSEPTADENVQVASSMSNQELIDAGKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKVVNPNNKDIRDIPGLAPPAPARRLLSLQAPEHF
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcccccccccccccHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHEEEccccccccccccccccccccccccccccccc
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcccccccccccHHHHHHHcHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEccccccccccccccccccccEEEEEcccccc
matdlqmspqlEQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIKEMDREIkdeearnppevnkqLNDEKQSMIKELNSYVALRKTYMNslgnkkvelfdmgagvseptadenVQVASSMSNQELIDAGKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKVvnpnnkdirdipglappaparrllslqapehf
matdlqmspqLEQIHGEIRDNFRALSNGFqkldkikdsnrqtkqleeltgrmreCKRLIKEMdreikdeearnppevnkqlndEKQSMIKELNSYVALRKTYMNSLGNKKVELFDMGAGVSEPTADENVQVASSMSNQELIDAGKKTMDETDQAIKRSQMVVEQTIEVGtqtattlkgqtdqMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKVVNPNNkdirdipglappaPARRllslqapehf
MATDLQMSPQLEQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEKQSMIKELNSYVALRKTYMNSLGNKKVELFDMGAGVSEPTADENVQVASSMSNQELIDAGKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLivcgviaiivvkvvNPNNKDIRDIPGlappaparrllslqapEHF
*******************************************************************************************LNSYVALRKTYMNSLGNKKVELFD*************************************************TIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKVVNPNNKDI************************
************QIHGEIRDNFRALS*******************************LIKEM*******************************************************************************************************IEVGTQTATTLKG************D***FSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKVVNP*****************RRLLSLQ*****
MATDLQMSPQLEQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEKQSMIKELNSYVALRKTYMNSLGNKKVELFDMGAGVSEPTADENVQVASSMSNQELIDAGKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKVVNPNNKDIRDIPGLAPPAPARRLLSLQAPEHF
*****QMSPQLEQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEKQSMIKELNSYVALRKTYMNSLGNKKVELFDMGAGVSEPTADENVQVASSMSNQELIDAGKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKVVNPNNKDIRDIPGLAPPAPARRLLSLQA****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MATDLQMSPQLEQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQxxxxxxxxxxxxxxxxxxxxxxxxxxxxNPPEVxxxxxxxxxxxxxxxxxxxxxRKTYMNSLGNKKVELFDMGAGVSEPTADENVQVASSMSNQELIDAGKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKVVNPNNKDIRDIPGLAPPAPARRLLSLQAPEHF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query268 2.2.26 [Sep-21-2011]
Q9LRP1269 Novel plant SNARE 13 OS=A yes no 1.0 0.996 0.840 1e-125
Q9LNH6265 Novel plant SNARE 12 OS=A no no 0.981 0.992 0.818 1e-121
Q944A9265 Novel plant SNARE 11 OS=A no no 0.936 0.947 0.658 8e-84
Q2KIU0232 Vesicle transport through yes no 0.832 0.961 0.207 9e-05
O88384232 Vesicle transport through yes no 0.402 0.465 0.231 0.0001
P58200232 Vesicle transport through yes no 0.388 0.448 0.261 0.0007
>sp|Q9LRP1|NPS13_ARATH Novel plant SNARE 13 OS=Arabidopsis thaliana GN=NPSN13 PE=1 SV=1 Back     alignment and function desciption
 Score =  449 bits (1154), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 226/269 (84%), Positives = 251/269 (93%), Gaps = 1/269 (0%)

Query: 1   MATDLQMSPQLEQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIK 60
           MA++L MSPQLEQIHGEIRD+FRAL+NGFQ+LDKIKDS RQ+KQLEELT +MRECKRL+K
Sbjct: 1   MASNLPMSPQLEQIHGEIRDHFRALANGFQRLDKIKDSTRQSKQLEELTDKMRECKRLVK 60

Query: 61  EMDREIKDEEARNPPEVNKQLNDEKQSMIKELNSYVALRKTYMNSLGNKKVELFDMGAGV 120
           E DRE+KDEEARN PEVNKQLNDEKQSMIKELNSYVALRKTYM++LGNKKVELFDMGAGV
Sbjct: 61  EFDRELKDEEARNSPEVNKQLNDEKQSMIKELNSYVALRKTYMSTLGNKKVELFDMGAGV 120

Query: 121 S-EPTADENVQVASSMSNQELIDAGKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQ 179
           S EPTA+ENVQVASSMSNQEL+DAG K MDETDQAI+RS+ VVEQT+EVGTQTA  LKGQ
Sbjct: 121 SGEPTAEENVQVASSMSNQELVDAGMKRMDETDQAIERSKQVVEQTLEVGTQTAANLKGQ 180

Query: 180 TDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKVVNP 239
           TDQMGR+VN LDTIQFSIKKASQLVKEIGRQVATDKCIM FLFLIVCGV+AII+VK+VNP
Sbjct: 181 TDQMGRVVNHLDTIQFSIKKASQLVKEIGRQVATDKCIMGFLFLIVCGVVAIIIVKIVNP 240

Query: 240 NNKDIRDIPGLAPPAPARRLLSLQAPEHF 268
           NNKDIRDIPGLAPPA +R+LL L+  ++ 
Sbjct: 241 NNKDIRDIPGLAPPAQSRKLLYLRNQDYM 269
Vesicle trafficking protein that functions in the secretory pathway.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LNH6|NPS12_ARATH Novel plant SNARE 12 OS=Arabidopsis thaliana GN=NPSN12 PE=2 SV=1 Back     alignment and function description
>sp|Q944A9|NPS11_ARATH Novel plant SNARE 11 OS=Arabidopsis thaliana GN=NPSN11 PE=1 SV=2 Back     alignment and function description
>sp|Q2KIU0|VTI1B_BOVIN Vesicle transport through interaction with t-SNAREs homolog 1B OS=Bos taurus GN=VTI1B PE=2 SV=1 Back     alignment and function description
>sp|O88384|VTI1B_MOUSE Vesicle transport through interaction with t-SNAREs homolog 1B OS=Mus musculus GN=Vti1b PE=1 SV=1 Back     alignment and function description
>sp|P58200|VTI1B_RAT Vesicle transport through interaction with t-SNAREs homolog 1B OS=Rattus norvegicus GN=Vti1b PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query268
255556570269 novel plant snare, putative [Ricinus com 0.996 0.992 0.872 1e-128
225432169269 PREDICTED: novel plant SNARE 13 [Vitis v 1.0 0.996 0.861 1e-128
388506856269 unknown [Lotus japonicus] 1.0 0.996 0.854 1e-128
449441500268 PREDICTED: novel plant SNARE 13-like [Cu 0.996 0.996 0.869 1e-127
449484978268 PREDICTED: novel plant SNARE 13-like [Cu 0.996 0.996 0.865 1e-127
356565471269 PREDICTED: novel plant SNARE 13-like [Gl 1.0 0.996 0.850 1e-126
224106974260 predicted protein [Populus trichocarpa] 0.970 1.0 0.869 1e-124
18401508269 Novel plant SNARE 13 [Arabidopsis thalia 1.0 0.996 0.840 1e-124
297834658269 NPSN13 [Arabidopsis lyrata subsp. lyrata 1.0 0.996 0.840 1e-124
357479175269 Putative plant SNARE [Medicago truncatul 1.0 0.996 0.839 1e-123
>gi|255556570|ref|XP_002519319.1| novel plant snare, putative [Ricinus communis] gi|223541634|gb|EEF43183.1| novel plant snare, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 233/267 (87%), Positives = 252/267 (94%)

Query: 1   MATDLQMSPQLEQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIK 60
           MA DLQMSPQLEQIHGEI+DN RALSNGFQ+LDKIKDSNRQTKQLEELT +MRECKRLIK
Sbjct: 1   MAADLQMSPQLEQIHGEIKDNLRALSNGFQRLDKIKDSNRQTKQLEELTAKMRECKRLIK 60

Query: 61  EMDREIKDEEARNPPEVNKQLNDEKQSMIKELNSYVALRKTYMNSLGNKKVELFDMGAGV 120
           E DREIKDEE++NPPEVNKQLNDEKQSMIK+LNSYVALRKTYMN+LGNKK+ELFD+G G 
Sbjct: 61  EFDREIKDEESKNPPEVNKQLNDEKQSMIKDLNSYVALRKTYMNTLGNKKIELFDVGPGA 120

Query: 121 SEPTADENVQVASSMSNQELIDAGKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQT 180
           SEP A+ENVQ+AS MSNQELIDAG KTMDETDQAI+RS  VV+QTIEVGTQTA +LKGQT
Sbjct: 121 SEPLAEENVQLASEMSNQELIDAGMKTMDETDQAIERSNKVVQQTIEVGTQTAVSLKGQT 180

Query: 181 DQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKVVNPN 240
           +QMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFL+VCGVIAIIVVK+VNPN
Sbjct: 181 EQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLVVCGVIAIIVVKIVNPN 240

Query: 241 NKDIRDIPGLAPPAPARRLLSLQAPEH 267
           NKDIRDIPGLAPPAP+RRLL L+  EH
Sbjct: 241 NKDIRDIPGLAPPAPSRRLLYLRDVEH 267

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225432169|ref|XP_002267688.1| PREDICTED: novel plant SNARE 13 [Vitis vinifera] gi|297736807|emb|CBI26008.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|388506856|gb|AFK41494.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|449441500|ref|XP_004138520.1| PREDICTED: novel plant SNARE 13-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449484978|ref|XP_004157035.1| PREDICTED: novel plant SNARE 13-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356565471|ref|XP_003550963.1| PREDICTED: novel plant SNARE 13-like [Glycine max] Back     alignment and taxonomy information
>gi|224106974|ref|XP_002314329.1| predicted protein [Populus trichocarpa] gi|222863369|gb|EEF00500.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|18401508|ref|NP_566578.1| Novel plant SNARE 13 [Arabidopsis thaliana] gi|27805646|sp|Q9LRP1.1|NPS13_ARATH RecName: Full=Novel plant SNARE 13; Short=AtNPSN13 gi|11994682|dbj|BAB02920.1| unnamed protein product [Arabidopsis thaliana] gi|20466312|gb|AAM20473.1| unknown protein [Arabidopsis thaliana] gi|24899843|gb|AAN65136.1| unknown protein [Arabidopsis thaliana] gi|332642432|gb|AEE75953.1| Novel plant SNARE 13 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297834658|ref|XP_002885211.1| NPSN13 [Arabidopsis lyrata subsp. lyrata] gi|297331051|gb|EFH61470.1| NPSN13 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357479175|ref|XP_003609873.1| Putative plant SNARE [Medicago truncatula] gi|355510928|gb|AES92070.1| Putative plant SNARE [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query268
TAIR|locus:2093601269 NPSN13 "AT3G17440" [Arabidopsi 0.929 0.925 0.824 4.1e-104
TAIR|locus:2007730265 NPSN12 "AT1G48240" [Arabidopsi 0.929 0.939 0.784 1.3e-100
TAIR|locus:2063459265 NPSN11 "AT2G35190" [Arabidopsi 0.895 0.905 0.612 3.1e-74
UNIPROTKB|E1BUX5232 VTI1B "Uncharacterized protein 0.757 0.875 0.223 9.8e-10
UNIPROTKB|F1N1Z0232 VTI1B "Vesicle transport throu 0.791 0.913 0.222 6.5e-08
UNIPROTKB|Q2KIU0232 VTI1B "Vesicle transport throu 0.791 0.913 0.222 6.5e-08
UNIPROTKB|Q9UEU0232 VTI1B "Vesicle transport throu 0.791 0.913 0.213 6.5e-08
UNIPROTKB|F1SA25232 VTI1B "Uncharacterized protein 0.791 0.913 0.222 1.6e-07
MGI|MGI:1855688232 Vti1b "vesicle transport throu 0.791 0.913 0.213 9.4e-07
RGD|1560475232 RGD1560475 "similar to vesicle 0.779 0.900 0.201 2.2e-06
TAIR|locus:2093601 NPSN13 "AT3G17440" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1031 (368.0 bits), Expect = 4.1e-104, P = 4.1e-104
 Identities = 206/250 (82%), Positives = 223/250 (89%)

Query:     1 MATDLQMSPQLEQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIK 60
             MA++L MSPQLEQIHGEIRD+FRAL+NGFQ+LDKIKDS RQ+KQLEELT +MRECKRL+K
Sbjct:     1 MASNLPMSPQLEQIHGEIRDHFRALANGFQRLDKIKDSTRQSKQLEELTDKMRECKRLVK 60

Query:    61 EMDREIKDEEARNPPEVNKQLNDEKQSMIKELNSYVALRKTYMNSLGNKKVELFDMGAGV 120
             E DRE+KDEEARN PEVNKQLNDEKQSMIKELNSYVALRKTYM++LGNKKVELFDMGAGV
Sbjct:    61 EFDRELKDEEARNSPEVNKQLNDEKQSMIKELNSYVALRKTYMSTLGNKKVELFDMGAGV 120

Query:   121 S-EPTADENVQVASSMSNQELIDAGKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQ 179
             S EPTA+ENVQVASSMSNQEL+DAG K MDETDQAI+RS+ VVEQT+EVGTQTA  LKGQ
Sbjct:   121 SGEPTAEENVQVASSMSNQELVDAGMKRMDETDQAIERSKQVVEQTLEVGTQTAANLKGQ 180

Query:   180 TDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLXXXXXXXXXXXXXXNP 239
             TDQMGR+VN LDTIQFSIKKASQLVKEIGRQVATDKCIM FLFL              NP
Sbjct:   181 TDQMGRVVNHLDTIQFSIKKASQLVKEIGRQVATDKCIMGFLFLIVCGVVAIIIVKIVNP 240

Query:   240 NNKDIRDIPG 249
             NNKDIRDIPG
Sbjct:   241 NNKDIRDIPG 250
GO:0003674 "molecular_function" evidence=ND
GO:0009507 "chloroplast" evidence=ISM
GO:0005886 "plasma membrane" evidence=IDA
GO:0006944 "cellular membrane fusion" evidence=RCA
GO:0016192 "vesicle-mediated transport" evidence=RCA
TAIR|locus:2007730 NPSN12 "AT1G48240" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2063459 NPSN11 "AT2G35190" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E1BUX5 VTI1B "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1N1Z0 VTI1B "Vesicle transport through interaction with t-SNAREs homolog 1B" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q2KIU0 VTI1B "Vesicle transport through interaction with t-SNAREs homolog 1B" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UEU0 VTI1B "Vesicle transport through interaction with t-SNAREs homolog 1B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SA25 VTI1B "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1855688 Vti1b "vesicle transport through interaction with t-SNAREs 1B" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1560475 RGD1560475 "similar to vesicle transport through interaction with t-SNAREs 1B homolog" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LRP1NPS13_ARATHNo assigned EC number0.84011.00.9962yesno
Q9LNH6NPS12_ARATHNo assigned EC number0.81810.98130.9924nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00019715001
SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (269 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query268
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 7e-04
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information 
 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 45/216 (20%), Positives = 90/216 (41%), Gaps = 13/216 (6%)

Query: 10  QLEQIHGEIRDNFRALSNGFQKLD----KIKD-----SNRQTKQLEELTGRMRECKRLIK 60
           +LE++  EI +  + L    Q L+    KIKD       R  +++ EL   +   +R I 
Sbjct: 252 ELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIA 311

Query: 61  EMDREIKDEEARNP---PEVNKQLNDEKQSMIKELNSYVALRKTYMNSLGNKKVELFDMG 117
           E +RE++D E R      E++K L  E + + +E+      R          K EL D+ 
Sbjct: 312 EKERELEDAEERLAKLEAEIDKLL-AEIEELEREIEEERKRRDKLTEEYAELKEELEDLR 370

Query: 118 AGVSEPTADENVQVASSMSNQELIDAGKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLK 177
           A + E   +           +E ++  K+ ++E  + + R Q  +++  E        + 
Sbjct: 371 AELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIA 430

Query: 178 GQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVAT 213
           G   ++  +  E +     IKK    ++++   ++ 
Sbjct: 431 GIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSK 466

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 268
KOG1666220 consensus V-SNARE [Intracellular trafficking, secr 100.0
KOG3251213 consensus Golgi SNAP receptor complex member [Intr 99.62
KOG3202235 consensus SNARE protein TLG1/Syntaxin 6 [Intracell 99.57
PF0390892 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membr 99.45
PF1235266 V-SNARE_C: Snare region anchored in the vesicle me 99.3
PF0500879 V-SNARE: Vesicle transport v-SNARE protein N-termi 99.07
KOG3208231 consensus SNARE protein GS28 [Intracellular traffi 98.92
KOG0810297 consensus SNARE protein Syntaxin 1 and related pro 98.7
KOG0812311 consensus SNARE protein SED5/Syntaxin 5 [Intracell 98.61
COG5074280 t-SNARE complex subunit, syntaxin [Intracellular t 98.54
KOG3385118 consensus V-SNARE [Intracellular trafficking, secr 98.19
KOG0811269 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt 98.15
smart0039766 t_SNARE Helical region found in SNAREs. All alpha- 98.06
PF0573963 SNARE: SNARE domain; InterPro: IPR000727 The proce 97.95
KOG0809305 consensus SNARE protein TLG2/Syntaxin 16 [Intracel 97.89
PF09753251 Use1: Membrane fusion protein Use1; InterPro: IPR0 97.7
PF0095789 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 97.55
COG5325283 t-SNARE complex subunit, syntaxin [Intracellular t 97.53
cd0019360 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fu 97.46
KOG3065273 consensus SNAP-25 (synaptosome-associated protein) 97.41
KOG0860116 consensus Synaptobrevin/VAMP-like protein [Intrace 97.03
KOG3894316 consensus SNARE protein Syntaxin 18/UFE1 [Intracel 96.27
PF0917797 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IP 96.26
KOG3065273 consensus SNAP-25 (synaptosome-associated protein) 96.11
PRK10884206 SH3 domain-containing protein; Provisional 96.1
KOG2678244 consensus Predicted membrane protein [Function unk 94.74
KOG1666220 consensus V-SNARE [Intracellular trafficking, secr 94.0
PF05478 806 Prominin: Prominin; InterPro: IPR008795 The promin 93.8
KOG0860116 consensus Synaptobrevin/VAMP-like protein [Intrace 93.66
PF0421070 MtrG: Tetrahydromethanopterin S-methyltransferase, 93.02
PF0095789 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 92.89
PF06008264 Laminin_I: Laminin Domain I; InterPro: IPR009254 L 92.42
TIGR0114970 mtrG N5-methyltetrahydromethanopterin:coenzyme M m 92.24
KOG3202235 consensus SNARE protein TLG1/Syntaxin 6 [Intracell 92.2
PRK0102677 tetrahydromethanopterin S-methyltransferase subuni 91.52
KOG0810297 consensus SNARE protein Syntaxin 1 and related pro 91.05
PF1291156 OppC_N: N-terminal TM domain of oligopeptide trans 90.43
KOG0859217 consensus Synaptobrevin/VAMP-like protein [Intrace 90.04
PF12273130 RCR: Chitin synthesis regulation, resistance to Co 89.66
COG406475 MtrG Tetrahydromethanopterin S-methyltransferase, 89.43
PF1077971 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemoly 88.92
PHA0304968 IMV membrane protein; Provisional 86.97
KOG0811269 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt 86.72
PF0596168 Chordopox_A13L: Chordopoxvirus A13L protein; Inter 86.5
PF09753251 Use1: Membrane fusion protein Use1; InterPro: IPR0 85.32
KOG0862216 consensus Synaptobrevin/VAMP-like protein SEC22 [I 85.32
PF0246843 PsbN: Photosystem II reaction centre N protein (ps 84.09
PF0988959 DUF2116: Uncharacterized protein containing a Zn-r 83.71
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=4.8e-40  Score=276.88  Aligned_cols=217  Identities=16%  Similarity=0.273  Sum_probs=189.8

Q ss_pred             ccHHHHHHHHHHHHHHHHHHhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhhHHHHHHHH
Q 024397            7 MSPQLEQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEKQ   86 (268)
Q Consensus         7 ~s~~~~~ye~ei~~~~~~l~~~~~~l~~~~~~~~r~~~i~~~~~~l~ea~~ll~~me~Ei~~~~~~~~~~~r~~~~~r~r   86 (268)
                      ||+.|+.||++|+.+.++|+++|+++.+++ +++|+..+.+++..++||+++|++||.|++++    |+.+|..|..|++
T Consensus         1 ms~~fe~yEqqy~~l~a~it~k~~~~~~~~-~~ekk~~l~~i~~~leEa~ell~qMdlEvr~l----p~~~Rs~~~~KlR   75 (220)
T KOG1666|consen    1 MSSLFEGYEQQYRELSAEITKKIGRALSLP-GSEKKQLLSEIDSKLEEANELLDQMDLEVREL----PPNFRSSYLSKLR   75 (220)
T ss_pred             CchHHHHHHHHHHHHHHHHHHhHHHHhcCC-chHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC----CchhhhHHHHHHH
Confidence            899999999999999999999999999965 89999999999999999999999999999997    5688999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhh--ccchhhhccCCCCCCCCCcchhhhhhccccHHHHHHhchhhhHHHHHHHHHHHHHHHH
Q 024397           87 SMIKELNSYVALRKTYMNSL--GNKKVELFDMGAGVSEPTADENVQVASSMSNQELIDAGKKTMDETDQAIKRSQMVVEQ  164 (268)
Q Consensus        87 ~~~~~l~~~~~l~k~~~~~~--~~~R~~L~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~~~~l~~~~~~L~~~~~~~~e  164 (268)
                      .|+++|+.++.-.+...+..  ..+|+++++...+.+         .....|||++++.+++.+.+++++|.++++++.|
T Consensus        76 ~yksdl~~l~~e~k~~~~~~~~~~~rde~~~~~~add---------~~~~~dQR~rLl~nTerLeRst~rl~ds~Ria~E  146 (220)
T KOG1666|consen   76 EYKSDLKKLKRELKRTTSRNLNAGDRDELLEALEADD---------QNISADQRARLLQNTERLERSTDRLKDSQRIALE  146 (220)
T ss_pred             HHHHHHHHHHHHHHHhhccccccchHHHHHhhhhccc---------cccchhHHHHHHhhhHHHHHhHHHHHHHHHHHHH
Confidence            99999998655444443111  225778876554321         1234689999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHH-HHHHHhhc
Q 024397          165 TIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVI-AIIVVKVV  237 (268)
Q Consensus       165 te~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~rr~~~dK~il~~iili~i~iI-~~i~~k~~  237 (268)
                      ||+||.+|+++|+.|||+|.+.++.+.+++++|++|+++|+.|.||+.+|||++.+||++++++| +++|+||+
T Consensus       147 TEqIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~~nk~~~~aii~~l~~~il~ilY~kf~  220 (220)
T KOG1666|consen  147 TEQIGSEILEDLHGQREQLERARERLRETDANLGKSRKILTTMTRRLIRNKFTLTAIIALLVLAILLILYSKFT  220 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999998888777666 55666663

>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway Back     alignment and domain information
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C Back     alignment and domain information
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles Back     alignment and domain information
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00397 t_SNARE Helical region found in SNAREs Back     alignment and domain information
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ] Back     alignment and domain information
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport Back     alignment and domain information
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis Back     alignment and domain information
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent Back     alignment and domain information
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle Back     alignment and domain information
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>KOG2678 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology Back     alignment and domain information
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea Back     alignment and domain information
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis Back     alignment and domain information
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells Back     alignment and domain information
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G Back     alignment and domain information
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional Back     alignment and domain information
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C Back     alignment and domain information
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls Back     alignment and domain information
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism] Back     alignment and domain information
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [] Back     alignment and domain information
>PHA03049 IMV membrane protein; Provisional Back     alignment and domain information
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses Back     alignment and domain information
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport Back     alignment and domain information
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae Back     alignment and domain information
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query268
2nps_C81 Vesicle transport through interaction with T- snar 3e-07
1l4a_C83 S-SNAP25 fusion protein; snare, snare complex, mem 5e-04
1n7s_C79 SNAP-25A; neuronal snare protein complex, four hel 8e-04
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Length = 81 Back     alignment and structure
 Score = 46.3 bits (110), Expect = 3e-07
 Identities = 8/72 (11%), Positives = 34/72 (47%)

Query: 144 GKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQL 203
             + ++ + + ++    +  +T ++G +    L    +++ R    L     ++ K+S++
Sbjct: 10  NTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRI 69

Query: 204 VKEIGRQVATDK 215
           +  + R++  ++
Sbjct: 70  LTGMLRRIIQNR 81
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Length = 83 Back     alignment and structure
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A Length = 79 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query268
2nps_C81 Vesicle transport through interaction with T- snar 99.74
2qyw_A102 Vesicle transport through interaction with T-SNAR 99.71
1vcs_A102 Vesicle transport through interaction with T- snar 99.59
3onj_A97 T-snare VTI1; helix, HABC, protein transport; 1.92 99.56
1gl2_C65 VTI1B, vesicle transport V-snare protein VTI1-like 99.5
1n7s_C79 SNAP-25A; neuronal snare protein complex, four hel 99.39
1nhl_A54 Synaptosomal-associated protein 23; snare, coiled- 98.98
1l4a_C83 S-SNAP25 fusion protein; snare, snare complex, mem 98.83
3b5n_C70 Protein transport protein SEC9; snare complex, syn 98.69
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 98.5
2nps_D82 Syntaxin-6; vesicle fusion, snare complex, early e 98.42
1gl2_D65 Syntaxin 8, vesicle transport V-snare protein VTI1 98.28
1sfc_D87 Protein (SNAP-25B), protein (synaptobrevin 2); mem 98.12
1n7s_D66 SNAP-25A; neuronal snare protein complex, four hel 98.06
3b5n_D64 Protein transport protein SEC9; snare complex, syn 98.0
1l4a_D87 S-SNAP25 fusion protein; snare, snare complex, mem 97.92
3hd7_A91 Vesicle-associated membrane protein 2; membrane pr 97.57
4dnd_A130 Syntaxin-10, SYN10; structural genomics, protein s 96.25
2kog_A119 Vesicle-associated membrane protein 2; synaptobrev 95.91
1jth_B77 Syntaxin 1A; coiled-coil, polar layer, endocytosis 95.77
1dn1_B267 Syntaxin 1A, syntaxin binding protein 1; protein-p 95.04
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 94.94
2nps_B71 Syntaxin 13, vesicle-associated membrane protein 4 94.76
3hd7_A91 Vesicle-associated membrane protein 2; membrane pr 94.15
1n7s_B68 Syntaxin 1A; neuronal snare protein complex, four 94.13
3b5n_B69 Protein SSO1; snare complex, syntaxin, synaptobrev 94.13
1gl2_B65 Syntaxin 7; membrane protein, membrane fusion prot 93.98
1sfc_B83 Protein (syntaxin 1A), protein (synaptobrevin 2); 92.03
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 86.15
2xhe_B279 Syntaxin1; exocytosis, exocytosis complex, snare, 85.33
2c5k_T95 Syntaxin TLG1, T-snare affecting A late golgi comp 84.61
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Back     alignment and structure
Probab=99.74  E-value=1.1e-17  Score=122.75  Aligned_cols=80  Identities=11%  Similarity=0.268  Sum_probs=75.9

Q ss_pred             cHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHhhhch
Q 024397          136 SNQELIDAGKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDK  215 (268)
Q Consensus       136 ~~r~~l~~~~~~l~~~~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~rr~~~dK  215 (268)
                      ++|+.++.+++.+++++++|.++.+++.|||+||.+|+++|..|+|+|.++++.|+++|+++++|.++|+.|.||+++||
T Consensus         2 ~qR~~Ll~~t~~L~rt~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~rr~~~nK   81 (81)
T 2nps_C            2 SMRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRRIIQNR   81 (81)
T ss_dssp             TTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred             cHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhCC
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999987
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V Back     alignment and structure
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1 Back     alignment and structure
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C Back     alignment and structure
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Back     alignment and structure
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A Back     alignment and structure
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1 Back     alignment and structure
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Back     alignment and structure
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens} Back     alignment and structure
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B Back     alignment and structure
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A Back     alignment and structure
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A Back     alignment and structure
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus} Back     alignment and structure
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Back     alignment and structure
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Back     alignment and structure
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A Back     alignment and structure
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B Back     alignment and structure
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Back     alignment and structure
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Back     alignment and structure
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Back     alignment and structure
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query268
d1vcsa189 Vesicle transport v-SNARE protein Vti1-like 2 {Mou 99.49
d1lvfa_106 Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicu 96.38
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Vesicle transport v-SNARE protein Vti1-like 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=5.6e-14  Score=102.78  Aligned_cols=80  Identities=13%  Similarity=0.312  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhhHHHHHHHHHHHHH
Q 024397           12 EQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEKQSMIKE   91 (268)
Q Consensus        12 ~~ye~ei~~~~~~l~~~~~~l~~~~~~~~r~~~i~~~~~~l~ea~~ll~~me~Ei~~~~~~~~~~~r~~~~~r~r~~~~~   91 (268)
                      |+||.+|+.++.+|+.++.+++. ..|++|++.+++++..+++|.++|++|++|++++    |+.+|..|++|++.|+.+
T Consensus         1 E~YE~~y~~l~a~i~~kl~~i~~-~~geerk~~l~~ie~~leEA~ell~qMelEvr~~----p~s~R~~~~~klr~Yk~d   75 (89)
T d1vcsa1           1 EGYEQDFAVLTAEITSKIARVPR-LPPDEKKQMVANVEKQLEEARELLEQMDLEVREI----PPQSRGMYSNRMRSYKQE   75 (89)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHGGG-SCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----CTTTHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC----CHHHHHHHHHHHHHHHHH
Confidence            47999999999999999999988 4789999999999999999999999999999998    457899999999999999


Q ss_pred             HHHHH
Q 024397           92 LNSYV   96 (268)
Q Consensus        92 l~~~~   96 (268)
                      |+.++
T Consensus        76 l~~lk   80 (89)
T d1vcsa1          76 MGKLE   80 (89)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88843
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure