Citrus Sinensis ID: 024398

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27

MYGFEAMTFNIHGGYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVCFQF

ccccccccccccccHHHHHHHHHHcccccHHHHHHHHcccccHHHHHHccccccHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHcccccccHHHHHHHHHHcHHHHHHHHHHccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHccccccccccHHHHHHHcccccHHHHHHcc

cccccEEEEEcccccHEEEEEccccccccHHHHHHccccccHHHHHHHcccccccHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHcccccccccccHEEEcccHHHHHHHHEccccccHHHHHcccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHEEEEEHHcccccccHHHHHHHcHHcccccHHHHHHHHccccHHHEEEEc

MYGFEAMTFNIHGGYLEAIVRGYRAGLLTaadynnlcqcetldDIKMHLsateygpylqnepsplhtttIVEKCTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEkchplgmfdSIATLAVAQNMRELYRLVLVdtplapyfsecitsedlddmnIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSigteltrddRRKLYSNFgllypygheelavcEDIDQVCFQF

MYGFEAMTFNIHGGYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECitsedlddmnIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITinsigteltrddrRKLYSNFGLLYPYGHEELAVCEDIDQVCFQF

**GFEAMTFNIHGGYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVCF**

*YGFEAMTFNIHGGYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVCFQF

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		268	2.2.26 [Sep-21-2011]
Q9LHA4		351	V-type proton ATPase subu	yes	no	0.985	0.752	0.946	1e-149
Q9LJI5		351	V-type proton ATPase subu	yes	no	0.985	0.752	0.946	1e-149
Q8RU33		351	Probable V-type proton AT	yes	no	0.985	0.752	0.928	1e-146
P54641		356	V-type proton ATPase subu	yes	no	0.962	0.724	0.644	1e-100
Q9W4P5		350	V-type proton ATPase subu	yes	no	0.966	0.74	0.590	8e-90
Q25531		348	V-type proton ATPase subu	N/A	no	0.955	0.735	0.582	6e-87
P51863		351	V-type proton ATPase subu	yes	no	0.985	0.752	0.564	1e-85
Q5ZHL0		351	V-type proton ATPase subu	no	no	0.985	0.752	0.556	2e-85
Q5R6I1		351	V-type proton ATPase subu	yes	no	0.985	0.752	0.560	3e-85
P61421		351	V-type proton ATPase subu	yes	no	0.985	0.752	0.560	3e-85

>sp\|Q9LHA4\|VA0D2_ARATH V-type proton ATPase subunit d2 OS=Arabidopsis thaliana GN=VHA-D2 PE=2 SV=1	Back alignment and function desciption

 Score =  527 bits (1358), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 250/264 (94%), Positives = 260/264 (98%)

Query: 1   MYGFEAMTFNIHGGYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQN 60
           MYGFEA+TFNIHGGYLEAIVRG+RAGLLT ADYNNLCQCE LDDIKMHLSAT+YGPYLQN
Sbjct: 1   MYGFEALTFNIHGGYLEAIVRGHRAGLLTTADYNNLCQCENLDDIKMHLSATKYGPYLQN 60

Query: 61  EPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLHER 120
           EPSPLHTTTIVEKCTLKLVD+YKHMLCQATEP+STFLEYI YGHMIDNVVLIVTGTLHER
Sbjct: 61  EPSPLHTTTIVEKCTLKLVDDYKHMLCQATEPMSTFLEYIRYGHMIDNVVLIVTGTLHER 120

Query: 121 DVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEI 180
           DVQEL+EKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSEC+TSEDLDDMNIEI
Sbjct: 121 DVQELIEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECLTSEDLDDMNIEI 180

Query: 181 MRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKL 240
           MRNTLYKAYLEDFY FCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTR+DR+KL
Sbjct: 181 MRNTLYKAYLEDFYNFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTREDRKKL 240

Query: 241 YSNFGLLYPYGHEELAVCEDIDQV 264
           YSNFGLLYPYGHEELA+CEDIDQV
Sbjct: 241 YSNFGLLYPYGHEELAICEDIDQV 264

Subunit of the integral membrane V0 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q9LJI5\|VA0D1_ARATH V-type proton ATPase subunit d1 OS=Arabidopsis thaliana GN=VHA-D1 PE=2 SV=1	Back alignment and function description

>sp\|Q8RU33\|VA0D_ORYSJ Probable V-type proton ATPase subunit d OS=Oryza sativa subsp. japonica GN=Os01g0587000 PE=2 SV=1	Back alignment and function description

>sp\|P54641\|VA0D_DICDI V-type proton ATPase subunit d OS=Dictyostelium discoideum GN=vatD-1 PE=1 SV=2	Back alignment and function description

>sp\|Q9W4P5\|VA0D1_DROME V-type proton ATPase subunit d 1 OS=Drosophila melanogaster GN=VhaAC39-1 PE=2 SV=1	Back alignment and function description

>sp\|Q25531\|VA0D_MANSE V-type proton ATPase subunit d OS=Manduca sexta PE=2 SV=1	Back alignment and function description

>sp\|P51863\|VA0D1_MOUSE V-type proton ATPase subunit d 1 OS=Mus musculus GN=Atp6v0d1 PE=1 SV=2	Back alignment and function description

>sp\|Q5ZHL0\|VA0D2_CHICK V-type proton ATPase subunit d 2 OS=Gallus gallus GN=ATP6V0D2 PE=2 SV=1	Back alignment and function description

>sp\|Q5R6I1\|VA0D1_PONAB V-type proton ATPase subunit d 1 OS=Pongo abelii GN=ATP6V0D1 PE=2 SV=1	Back alignment and function description

>sp\|P61421\|VA0D1_HUMAN V-type proton ATPase subunit d 1 OS=Homo sapiens GN=ATP6V0D1 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		268
449459460		351	PREDICTED: V-type proton ATPase subunit	0.985	0.752	0.984	1e-152
357501685		351	V-type proton ATPase subunit d2 [Medicag	0.985	0.752	0.977	1e-151
356531794		351	PREDICTED: V-type proton ATPase subunit	0.985	0.752	0.973	1e-150
225452712		351	PREDICTED: V-type proton ATPase subunit	0.985	0.752	0.973	1e-150
217072440		351	unknown [Medicago truncatula] gi\|3885009	0.985	0.752	0.969	1e-150
148907059		351	unknown [Picea sitchensis]	0.985	0.752	0.973	1e-149
209981405		351	vacuolar ATPase subunit d [Vigna radiata	0.985	0.752	0.965	1e-149
255561094		351	vacuolar ATP synthase subunit ac39, puta	0.985	0.752	0.965	1e-149
363814316		351	uncharacterized protein LOC100780773 [Gl	0.985	0.752	0.965	1e-148
224141359		351	predicted protein [Populus trichocarpa]	0.985	0.752	0.958	1e-148

>gi\|449459460\|ref\|XP_004147464.1\| PREDICTED: V-type proton ATPase subunit d2-like [Cucumis sativus] gi\|449518539\|ref\|XP_004166299.1\| PREDICTED: V-type proton ATPase subunit d2-like [Cucumis sativus]	Back alignment and taxonomy information

 Score =  543 bits (1398), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 260/264 (98%), Positives = 264/264 (100%)

Query: 1   MYGFEAMTFNIHGGYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQN 60
           MYGFEA+TFNIHGGYLEAIVRG+RAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQN
Sbjct: 1   MYGFEALTFNIHGGYLEAIVRGHRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQN 60

Query: 61  EPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLHER 120
           EPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLHER
Sbjct: 61  EPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLHER 120

Query: 121 DVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEI 180
           DVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEI
Sbjct: 121 DVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEI 180

Query: 181 MRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKL 240
           MRNTLYKAYLEDFY+FCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKL
Sbjct: 181 MRNTLYKAYLEDFYRFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKL 240

Query: 241 YSNFGLLYPYGHEELAVCEDIDQV 264
           YSNFGLLYPYGHEELA+CEDIDQV
Sbjct: 241 YSNFGLLYPYGHEELAICEDIDQV 264

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|357501685\|ref\|XP_003621131.1\| V-type proton ATPase subunit d2 [Medicago truncatula] gi\|124360985\|gb\|ABN08957.1\| H+-transporting two-sector ATPase, C (AC39) subunit [Medicago truncatula] gi\|355496146\|gb\|AES77349.1\| V-type proton ATPase subunit d2 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356531794\|ref\|XP_003534461.1\| PREDICTED: V-type proton ATPase subunit d2-like isoform 1 [Glycine max]	Back alignment and taxonomy information

>gi\|225452712\|ref\|XP_002282568.1\| PREDICTED: V-type proton ATPase subunit d2 [Vitis vinifera] gi\|147866282\|emb\|CAN79922.1\| hypothetical protein VITISV_042442 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|217072440\|gb\|ACJ84580.1\| unknown [Medicago truncatula] gi\|388500930\|gb\|AFK38531.1\| unknown [Medicago truncatula]	Back alignment and taxonomy information

>gi\|148907059\|gb\|ABR16673.1\| unknown [Picea sitchensis]	Back alignment and taxonomy information

>gi\|209981405\|gb\|ACJ05375.1\| vacuolar ATPase subunit d [Vigna radiata]	Back alignment and taxonomy information

>gi\|255561094\|ref\|XP_002521559.1\| vacuolar ATP synthase subunit ac39, putative [Ricinus communis] gi\|223539237\|gb\|EEF40830.1\| vacuolar ATP synthase subunit ac39, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|363814316\|ref\|NP_001242797.1\| uncharacterized protein LOC100780773 [Glycine max] gi\|255640110\|gb\|ACU20346.1\| unknown [Glycine max]	Back alignment and taxonomy information

>gi\|224141359\|ref\|XP_002324040.1\| predicted protein [Populus trichocarpa] gi\|222867042\|gb\|EEF04173.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		268
TAIR\|locus:2095492		351	AT3G28715 [Arabidopsis thalian	0.985	0.752	0.946	9.5e-137
TAIR\|locus:2095482		351	AT3G28710 [Arabidopsis thalian	0.985	0.752	0.946	2e-136
DICTYBASE\|DDB_G0273657		356	vatD-2 "vacuolar ATPase subuni	0.958	0.721	0.647	9e-93
DICTYBASE\|DDB_G0273071		356	vatD-1 "vacuolar ATPase subuni	0.958	0.721	0.647	9e-93
FB\|FBgn0028665		350	VhaAC39-1 "Vacuolar H[+] ATPas	0.955	0.731	0.597	5.6e-84
WB\|WBGene00016258		348	vha-16 [Caenorhabditis elegans	0.955	0.735	0.578	8.5e-81
ZFIN\|ZDB-GENE-030131-1531		350	atp6v0d1 "ATPase, H+ transport	0.973	0.745	0.563	1.4e-80
UNIPROTKB\|Q5ZHL0		351	ATP6V0D2 "V-type proton ATPase	0.985	0.752	0.556	2.2e-80
MGI\|MGI:1201778		351	Atp6v0d1 "ATPase, H+ transport	0.973	0.743	0.567	4.7e-80
RGD\|1306159		351	Atp6v0d1 "ATPase, H+ transport	0.973	0.743	0.567	4.7e-80

TAIR\|locus:2095492 AT3G28715 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1339 (476.4 bits), Expect = 9.5e-137, P = 9.5e-137
 Identities = 250/264 (94%), Positives = 260/264 (98%)

Query:     1 MYGFEAMTFNIHGGYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQN 60
             MYGFEA+TFNIHGGYLEAIVRG+RAGLLT ADYNNLCQCE LDDIKMHLSAT+YGPYLQN
Sbjct:     1 MYGFEALTFNIHGGYLEAIVRGHRAGLLTTADYNNLCQCENLDDIKMHLSATKYGPYLQN 60

Query:    61 EPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLHER 120
             EPSPLHTTTIVEKCTLKLVD+YKHMLCQATEP+STFLEYI YGHMIDNVVLIVTGTLHER
Sbjct:    61 EPSPLHTTTIVEKCTLKLVDDYKHMLCQATEPMSTFLEYIRYGHMIDNVVLIVTGTLHER 120

Query:   121 DVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEI 180
             DVQEL+EKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSEC+TSEDLDDMNIEI
Sbjct:   121 DVQELIEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECLTSEDLDDMNIEI 180

Query:   181 MRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKL 240
             MRNTLYKAYLEDFY FCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTR+DR+KL
Sbjct:   181 MRNTLYKAYLEDFYNFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTREDRKKL 240

Query:   241 YSNFGLLYPYGHEELAVCEDIDQV 264
             YSNFGLLYPYGHEELA+CEDIDQV
Sbjct:   241 YSNFGLLYPYGHEELAICEDIDQV 264

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015992 "proton transport" evidence=ISS

GO:0033177 "proton-transporting two-sector ATPase complex, proton-transporting domain" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=ISS

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR\|locus:2095482 AT3G28710 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0273657 vatD-2 "vacuolar ATPase subunit D" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0273071 vatD-1 "vacuolar ATPase subunit D" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

FB\|FBgn0028665 VhaAC39-1 "Vacuolar H[+] ATPase AC39 subunit 1" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

WB\|WBGene00016258 vha-16 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-030131-1531 atp6v0d1 "ATPase, H+ transporting, V0 subunit D isoform 1" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5ZHL0 ATP6V0D2 "V-type proton ATPase subunit d 2" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

MGI\|MGI:1201778 Atp6v0d1 "ATPase, H+ transporting, lysosomal V0 subunit D1" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

RGD\|1306159 Atp6v0d1 "ATPase, H+ transporting, lysosomal V0 subunit D1" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LHA4	VA0D2_ARATH	No assigned EC number	0.9469	0.9850	0.7521	yes	no
Q9LJI5	VA0D1_ARATH	No assigned EC number	0.9469	0.9850	0.7521	yes	no
O13753	VA0D_SCHPO	No assigned EC number	0.5227	0.9701	0.7580	yes	no
P61421	VA0D1_HUMAN	No assigned EC number	0.5606	0.9850	0.7521	yes	no
P54641	VA0D_DICDI	No assigned EC number	0.6447	0.9626	0.7247	yes	no
Q9W4P5	VA0D1_DROME	No assigned EC number	0.5907	0.9664	0.74	yes	no
P51863	VA0D1_MOUSE	No assigned EC number	0.5643	0.9850	0.7521	yes	no
Q8RU33	VA0D_ORYSJ	No assigned EC number	0.9280	0.9850	0.7521	yes	no
P61420	VA0D1_BOVIN	No assigned EC number	0.5606	0.9850	0.7521	yes	no
Q5R6I1	VA0D1_PONAB	No assigned EC number	0.5606	0.9850	0.7521	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00020891001	SubName- Full=Putative uncharacterized protein (Chromosome chr14 scaffold_21, whole genome shotgun sequence); (351 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00013522001	SubName- Full=Chromosome undetermined scaffold_495, whole genome shotgun sequence; (285 aa)	•		•		0.910
	GSVIVG00029599001	SubName- Full=Chromosome chr9 scaffold_49, whole genome shotgun sequence; (849 aa)			•		0.899
	GSVIVG00026188001	SubName- Full=Putative uncharacterized protein (Chromosome chr15 scaffold_37, whole genome shot [...] (222 aa)			•		0.899
	GSVIVG00024902001	SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (232 aa)			•		0.899
	GSVIVG00022618001	SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (606 aa)			•		0.899
	VPP	SubName- Full=Chromosome chr11 scaffold_170, whole genome shotgun sequence; (764 aa)			•		0.899
	GSVIVG00003295001	SubName- Full=Chromosome undetermined scaffold_141, whole genome shotgun sequence; (767 aa)			•		0.899
	GSVIVG00000475001	SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (214 aa)			•		0.899
	GSVIVG00018828001	SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (261 aa)	•	•	•	•	0.776
	GSVIVG00035934001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (822 aa)	•	•	•	•	0.696

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		268
pfam01992		335	pfam01992, vATP-synt_AC39, ATP synthase (C/AC39) s	4e-76
COG1527		346	COG1527, NtpC, Archaeal/vacuolar-type H+-ATPase su	1e-51
PRK01198		352	PRK01198, PRK01198, V-type ATP synthase subunit C;	2e-10
TIGR02923		343	TIGR02923, AhaC, ATP synthase A1, C subunit	3e-09

>gnl\|CDD\|216834 pfam01992, vATP-synt_AC39, ATP synthase (C/AC39) subunit	Back alignment and domain information

 Score =  234 bits (598), Expect = 4e-76
 Identities = 85/251 (33%), Positives = 130/251 (51%), Gaps = 5/251 (1%)

Query: 15  YLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKC 74
           Y  A VR  R+ LL   DY  L + E+L+ +++ L   +YG  L    S    + I +  
Sbjct: 1   YPNARVRAMRSRLLKEEDYRELLEMESLEILRLLLE-DDYGDELAELGSKFSVSLIEKAL 59

Query: 75  TLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLG- 133
              L   Y+ +   A   L   ++ +     I N+  ++ G L  R  +E+LE   PLG 
Sbjct: 60  NRNLAKTYELLRRIAPGSLRKLIDLLLKRWDIWNIKTLIRGKLAGRPAEEVLELLIPLGE 119

Query: 134 MFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDF 193
           +F+ +  LA A+ + E+   VL  TP AP   + +   + D+ NIEI+ NTLYK Y E+ 
Sbjct: 120 VFEKMKELADAKTIEEVVN-VLEGTPYAPPLQKAL--SEYDETNIEIIENTLYKRYYEEL 176

Query: 194 YKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHE 253
            KF +  GG  A+I+ + LA E DRR + I +   G+ L+ D+ +KLY   G L P G E
Sbjct: 177 LKFAKSRGGKEAKILREFLALEIDRRNLKIALRLKGSGLSPDEIKKLYPEGGQLVPEGLE 236

Query: 254 ELAVCEDIDQV 264
           +LA  +D D+V
Sbjct: 237 KLARADDYDEV 247

This family includes the AC39 subunit from vacuolar ATP synthase, and the C subunit from archaebacterial ATP synthase. The family also includes subunit C from the Sodium transporting ATP synthase from Enterococcus hirae. Length = 335

>gnl\|CDD\|224444 COG1527, NtpC, Archaeal/vacuolar-type H+-ATPase subunit C [Energy production and conversion]	Back alignment and domain information

>gnl\|CDD\|234917 PRK01198, PRK01198, V-type ATP synthase subunit C; Provisional	Back alignment and domain information

>gnl\|CDD\|234061 TIGR02923, AhaC, ATP synthase A1, C subunit	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		268
KOG2957		350	consensus Vacuolar H+-ATPase V0 sector, subunit d	100.0
COG1527		346	NtpC Archaeal/vacuolar-type H+-ATPase subunit C [E	100.0
PF01992		337	vATP-synt_AC39: ATP synthase (C/AC39) subunit; Int	100.0
TIGR02923		343	AhaC ATP synthase A1, C subunit. The A1/A0 ATP syn	100.0
PRK01198		352	V-type ATP synthase subunit C; Provisional	100.0
PRK01198		352	V-type ATP synthase subunit C; Provisional	99.9
TIGR02923		343	AhaC ATP synthase A1, C subunit. The A1/A0 ATP syn	99.79
PF01992		337	vATP-synt_AC39: ATP synthase (C/AC39) subunit; Int	99.57
COG1527		346	NtpC Archaeal/vacuolar-type H+-ATPase subunit C [E	99.42
KOG2957		350	consensus Vacuolar H+-ATPase V0 sector, subunit d	96.43
PF10962		271	DUF2764: Protein of unknown function (DUF2764); In	95.19

>KOG2957 consensus Vacuolar H+-ATPase V0 sector, subunit d [Energy production and conversion]	Back alignment and domain information

Probab=100.00  E-value=4.3e-85  Score=586.68  Aligned_cols=268  Identities=67%  Similarity=1.078  Sum_probs=264.8

Q ss_pred             CCCCCcccccCCCchHHHhHHhHhccCCCHHhHHHHHcCCChHHHHHhcCCCCchhhhcCCCCCCCHHHHHHHHHHhHHH
Q 024398            1 MYGFEAMTFNIHGGYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVD   80 (268)
Q Consensus         1 ~~~~~~~~fn~~~gY~~a~VRg~~~~lL~~~dY~~L~~~~tl~di~~~L~~TdY~~~l~~~~~~~~~~~Ie~~L~~~L~~   80 (268)
                      |..|+.++||++|||++|.|||.|+|+|+++||.+|+|||||||++.+|++||||.+++++++++|++.|+++|+++|+.
T Consensus         1 m~~~~~~~fn~~~GYle~lvrG~k~glL~~~dY~nL~QCE~LEDlki~Ls~Tdyg~fl~n~~s~lt~s~I~~~l~ekL~~   80 (350)
T KOG2957|consen    1 MLMMEALSFNIDYGYLEALVRGKKAGLLKQADYNNLVQCENLEDLKIHLSSTDYGNFLANEPSPLTVSVIDEKLREKLVD   80 (350)
T ss_pred             CCcccceEEeccccchHHHHhhhhhhhhhHHHHHHHHhhccHHHHHHhhcccccccccccCCCCCcHHHHHHHHHHHHHH
Confidence            66788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCccHHHHHHHHhhhhHHHHHHHHHHhhcCCCChHHHHhhccCCCCccchhHHHhhcCHHHHHHHHhcCCCC
Q 024398           81 EYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPL  160 (268)
Q Consensus        81 ~f~~l~~~a~~~l~~fl~~l~~~~~I~Nv~~llrg~~~~~~~~el~~~~~PlG~f~~l~~L~~a~~v~el~~~vL~~Tp~  160 (268)
                      +|+++|.+|.+|+++||+|+++.||||||.++|+|++++|+..+++++|||+|+|+++.+|.+|+|+.|+|++||++||+
T Consensus        81 ef~h~R~~a~epl~tfldyity~ymIdNv~lLitgtl~~r~~~ell~kChpLG~F~~l~ai~vA~n~~ely~~vlvdTpl  160 (350)
T KOG2957|consen   81 EFDHIRDQADEPLSTFLDYITYGYMIDNVILLITGTLHDRDVGELLEKCHPLGSFDQLEAIKVASNPAELYNAVLVDTPL  160 (350)
T ss_pred             HHHHHHhcccccHHHHHHHHHHHHHHhHHHHHHhccccCCCHHHHHHhcCCcCchhhhhhhhhcCCHHHHHHHHHhcCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhccccccCCccHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHhhHHHHHHHHHHHHhcCCCCCHHHHhcc
Q 024398          161 APYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKL  240 (268)
Q Consensus       161 ~~~~~~~l~~~~~~~~~ie~~~~~Ldk~Y~e~~~~~~~~l~~~~~~im~~~l~~eaD~~ni~iilns~~~~ls~~~r~~l  240 (268)
                      +|||++|+++++++++|+|++||.|+|+|+|+||+||+++||.|+++|+++|+||||||+|.|++||++++|++++|.+|
T Consensus       161 a~~F~dc~~~~dld~mniEIiRn~lYKaylE~fY~fc~~~g~~tae~M~~iL~fEaDRRai~ItiNs~gteL~~~~R~kL  240 (350)
T KOG2957|consen  161 APYFEDCLSEEDLDEMNIEIIRNTLYKAYLEDFYNFCKKLGGATAEVMCEILAFEADRRAIIITINSFGTELSKEDRAKL  240 (350)
T ss_pred             hHHHHhhcCHhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhhcccceeEEEehhhcccccChhHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCccCHHhHHhhccCCChHHHhhhC
Q 024398          241 YSNFGLLYPYGHEELAVCEDIDQVCFQF  268 (268)
Q Consensus       241 ~P~~g~L~~~~~~~L~~a~~~e~v~~~~  268 (268)
                      ||++|+|||.++..||.|+|.|+|++|+
T Consensus       241 ~P~~g~lyp~~~~~La~aed~e~vk~v~  268 (350)
T KOG2957|consen  241 YPNCGKLYPRGLELLARAEDYEQVKNVL  268 (350)
T ss_pred             CCCcCccChhHHHHHHhhhhHHHHHHHH
Confidence            9999999999999999999999999873

>COG1527 NtpC Archaeal/vacuolar-type H+-ATPase subunit C [Energy production and conversion]	Back alignment and domain information

>PF01992 vATP-synt_AC39: ATP synthase (C/AC39) subunit; InterPro: IPR002843 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>TIGR02923 AhaC ATP synthase A1, C subunit	Back alignment and domain information

>PRK01198 V-type ATP synthase subunit C; Provisional	Back alignment and domain information

>PRK01198 V-type ATP synthase subunit C; Provisional	Back alignment and domain information

>TIGR02923 AhaC ATP synthase A1, C subunit	Back alignment and domain information

>PF01992 vATP-synt_AC39: ATP synthase (C/AC39) subunit; InterPro: IPR002843 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>COG1527 NtpC Archaeal/vacuolar-type H+-ATPase subunit C [Energy production and conversion]	Back alignment and domain information

>KOG2957 consensus Vacuolar H+-ATPase V0 sector, subunit d [Energy production and conversion]	Back alignment and domain information

>PF10962 DUF2764: Protein of unknown function (DUF2764); InterPro: IPR024492 This bacterial family of proteins has no known function	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		268
1v9m_A		323	V-type ATP synthase subunit C; VOV1-ATPase, V-type	1e-43
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>1v9m_A V-type ATP synthase subunit C; VOV1-ATPase, V-type ATPase, the C subunit, thermus thermophi riken structural genomics/proteomics initiative; 1.85A {Thermus thermophilus} SCOP: f.40.1.1 PDB: 1r5z_A 3j0j_M* Length = 323	Back alignment and structure

 Score =  149 bits (378), Expect = 1e-43
 Identities = 43/252 (17%), Positives = 79/252 (31%), Gaps = 17/252 (6%)

Query: 14  GYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEK 73
            YL A VR  R  LL  + +         D +++ LS T YG  L  +  P     +   
Sbjct: 6   AYLNARVRVRRGTLLKESFFQEALDLSFADFLRL-LSETVYGGELAGQGLPD----VDRA 60

Query: 74  CTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLG 133
                      +    T      +  +   + + N+  ++      R  +E+L     L 
Sbjct: 61  VLRTQAKLVGDLPRLVTGEAREAVRLLLLRNDLHNLQALLRAKATGRPFEEVLLLPGTL- 119

Query: 134 MFDSIATLAVAQNMRELYRLVLVD-TPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLED 192
             +       AQ+   + +++ V   PLA      +     +  ++  +   L K + ED
Sbjct: 120 REEVWRQAYEAQDPAGMAQVLAVPGHPLARALRAVL----RETQDLARVEALLAKRFFED 175

Query: 193 FYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGH 252
             K  + L       + D LA E D   +       G+ L        +   G       
Sbjct: 176 VAKAAKGL---DQPALRDYLALEVDAENLRTAFKLQGSGL---APDAFFLKGGRFVDRVR 229

Query: 253 EELAVCEDIDQV 264
               +  D   +
Sbjct: 230 FARLMEGDYAVL 241

PyMOL of 1v9m

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		268
1v9m_A		323	V-type ATP synthase subunit C; VOV1-ATPase, V-type	100.0
1v9m_A		323	V-type ATP synthase subunit C; VOV1-ATPase, V-type	99.43

>1v9m_A V-type ATP synthase subunit C; VOV1-ATPase, V-type ATPase, the C subunit, thermus thermophi riken structural genomics/proteomics initiative; 1.85A {Thermus thermophilus} SCOP: f.40.1.1 PDB: 1r5z_A 3j0j_M*	Back alignment and structure

Probab=100.00  E-value=9.2e-48  Score=353.54  Aligned_cols=237  Identities=17%  Similarity=0.154  Sum_probs=211.5

Q ss_pred             CCchHHHhHHhHhccCCCHHhHHHHHcCCChHHHHHhcCCCCchhhhcCCCCCCCHHHHHHHHHHhHHHHHHHHHHhcCc
Q 024398           12 HGGYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLCQATE   91 (268)
Q Consensus        12 ~~gY~~a~VRg~~~~lL~~~dY~~L~~~~tl~di~~~L~~TdY~~~l~~~~~~~~~~~Ie~~L~~~L~~~f~~l~~~a~~   91 (268)
                      +|||++||||||+++||++++|.+|++ +|++|++.+|++|+||+++++.+    ++.||.+|+++++++|+++++++++
T Consensus         4 ~y~y~~arvR~~~~~lL~~~~~~~L~~-~sl~e~~~~L~~t~Y~~~l~~~~----~~~iE~~L~~~l~~~~~~l~~~~~~   78 (323)
T 1v9m_A            4 DFAYLNARVRVRRGTLLKESFFQEALD-LSFADFLRLLSETVYGGELAGQG----LPDVDRAVLRTQAKLVGDLPRLVTG   78 (323)
T ss_dssp             -CHHHHHHHHHHHTTSCCHHHHHHHTT-CCHHHHHHHHHTSGGGGGCCCSS----HHHHHHHHHHHHHHHTTTHHHHCCH
T ss_pred             cchhHhHHHHHHHHhccCHHHHHHHHh-CCHHHHHHHHhcCchHHHHhhcC----HHHHHHHHHHHHHHHHHHHHHHCCc
Confidence            499999999999999999999999999 99999999999999999998754    7899999999999999999999999


Q ss_pred             cHHHHHHHHhhhhHHHHHHHHHHhhcCCCChHHHHhhccCCCCccc--hhHHHhhcCHHHHHHHHhcCCCChhhhhhhcc
Q 024398           92 PLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFDS--IATLAVAQNMRELYRLVLVDTPLAPYFSECIT  169 (268)
Q Consensus        92 ~l~~fl~~l~~~~~I~Nv~~llrg~~~~~~~~el~~~~~PlG~f~~--l~~L~~a~~v~el~~~vL~~Tp~~~~~~~~l~  169 (268)
                      +.++|+++++++|||+||+.++||+.+|++.+++.  |+| |.|+.  +.++..++|++|++.. |.+|||++++..+..
T Consensus        79 ~~~~~~~~~~~~~di~Nik~ilr~~~~~~~~~~l~--~~~-g~~~~~~l~~l~~a~~~~el~~~-L~~t~y~~~l~~~~~  154 (323)
T 1v9m_A           79 EAREAVRLLLLRNDLHNLQALLRAKATGRPFEEVL--LLP-GTLREEVWRQAYEAQDPAGMAQV-LAVPGHPLARALRAV  154 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCGGGCC--CCS-CSSCHHHHHHHHHSSSHHHHHHH-HHTTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccc--cCC-CCCCHHHHHHHHhCCCHHHHHHH-HhccccchHHHHHHH
Confidence            99999999999999999999999999999999988  999 99996  9999999999999976 899999988887754


Q ss_pred             ccccCCccHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHhhHHHHHHHHHHHHhcCCCCCHHHHhccccCCCc-cC
Q 024398          170 SEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGL-LY  248 (268)
Q Consensus       170 ~~~~~~~~ie~~~~~Ldk~Y~e~~~~~~~~l~~~~~~im~~~l~~eaD~~ni~iilns~~~~ls~~~r~~l~P~~g~-L~  248 (268)
                      .  +.+.|++.+++.|||+||+++|++|+++++   ++|+++++++||++||+|++|+++++++  .+. +++.+|+ |+
T Consensus       155 ~--~~~~~~~~~e~~Ldk~y~~~~~~~~~~~~~---~~l~~~~~~~iD~~Ni~~~lr~~~~~~~--i~~-~li~~G~~l~  226 (323)
T 1v9m_A          155 L--RETQDLARVEALLAKRFFEDVAKAAKGLDQ---PALRDYLALEVDAENLRTAFKLQGSGLA--PDA-FFLKGGRFVD  226 (323)
T ss_dssp             H--TTCCCHHHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHHHHHHTTTSCCC--GGG-TCCSSCSSCC
T ss_pred             H--HHcCCcHHHHHHHHHHHHHHHHHHHhhcCh---HHHHHHHHHHHHHHHHHHHHHHHHcCCC--HHH-hccCCCCccC
Confidence            2  455589999999999999999999988765   7899999999999999999999998887  444 5555786 99


Q ss_pred             HHhHHhhccCCChHHHhhh
Q 024398          249 PYGHEELAVCEDIDQVCFQ  267 (268)
Q Consensus       249 ~~~~~~L~~a~~~e~v~~~  267 (268)
                      |++++.|+++++  ++.++
T Consensus       227 ~~~l~~l~~~~~--~~~~~  243 (323)
T 1v9m_A          227 RVRFARLMEGDY--AVLDE  243 (323)
T ss_dssp             HHHHHHHHTTCG--GGGGS
T ss_pred             HHHHHHHHhCcH--HHHHH
Confidence            999999999998  66554

PyMOL of 1v9m

>1v9m_A V-type ATP synthase subunit C; VOV1-ATPase, V-type ATPase, the C subunit, thermus thermophi riken structural genomics/proteomics initiative; 1.85A {Thermus thermophilus} SCOP: f.40.1.1 PDB: 1r5z_A 3j0j_M*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		268
d1v9ma_		319	f.40.1.1 (A:) V-type ATP synthase subunit C {Therm	5e-46

>d1v9ma_ f.40.1.1 (A:) V-type ATP synthase subunit C {Thermus thermophilus [TaxId: 274]} Length = 319	Back information, alignment and structure


class: Membrane and cell surface proteins and peptides
fold: V-type ATP synthase subunit C
superfamily: V-type ATP synthase subunit C
family: V-type ATP synthase subunit C
domain: V-type ATP synthase subunit C
species: Thermus thermophilus [TaxId: 274]

 Score =  154 bits (391), Expect = 5e-46
 Identities = 43/254 (16%), Positives = 72/254 (28%), Gaps = 21/254 (8%)

Query: 14  GYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEK 73
            YL A VR  R  LL  + +          D    LS T YG  L  +  P     +   
Sbjct: 2   AYLNARVRVRRGTLLKESFFQEALDLS-FADFLRLLSETVYGGELAGQGLPD----VDRA 56

Query: 74  CTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLG 133
                      +    T      +  +   + + N+  ++      R  +E+L      G
Sbjct: 57  VLRTQAKLVGDLPRLVTGEAREAVRLLLLRNDLHNLQALLRAKATGRPFEEVL---LLPG 113

Query: 134 MFD--SIATLAVAQNMRELYR-LVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYL 190
                       AQ+   + + L +   PLA            +  ++  +   L K + 
Sbjct: 114 TLREEVWRQAYEAQDPAGMAQVLAVPGHPLARALRAV----LRETQDLARVEALLAKRFF 169

Query: 191 EDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPY 250
           ED  K      G     + D LA E D   +       G+ L        +   G     
Sbjct: 170 EDVAKAA---KGLDQPALRDYLALEVDAENLRTAFKLQGSGL---APDAFFLKGGRFVDR 223

Query: 251 GHEELAVCEDIDQV 264
                 +  D   +
Sbjct: 224 VRFARLMEGDYAVL 237

PyMOL of d1v9ma_

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		268
d1v9ma_		319	V-type ATP synthase subunit C {Thermus thermophilu	100.0
d1v9ma_		319	V-type ATP synthase subunit C {Thermus thermophilu	99.21

>d1v9ma_ f.40.1.1 (A:) V-type ATP synthase subunit C {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: V-type ATP synthase subunit C
superfamily: V-type ATP synthase subunit C
family: V-type ATP synthase subunit C
domain: V-type ATP synthase subunit C
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.3e-41  Score=310.20  Aligned_cols=235  Identities=18%  Similarity=0.181  Sum_probs=201.3

Q ss_pred             CchHHHhHHhHhccCCCHHhHHHHHcCCChHHHHHhcCCCCchhhhcCCCCCCCHHHHHHHHHHhHHHHHHHHHHhcCcc
Q 024398           13 GGYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLCQATEP   92 (268)
Q Consensus        13 ~gY~~a~VRg~~~~lL~~~dY~~L~~~~tl~di~~~L~~TdY~~~l~~~~~~~~~~~Ie~~L~~~L~~~f~~l~~~a~~~   92 (268)
                      |||++||||||+++||++++|.+|+|| +++|++.+|++|+||+++++    .+++.||.+|+++++++|++++++++++
T Consensus         1 Y~y~~arir~~~~~lL~~~~~~~L~~~-s~~e~~~~L~~t~Y~~~l~~----~~~~~ie~~L~~~l~~~~~~l~~~~~~~   75 (319)
T d1v9ma_           1 FAYLNARVRVRRGTLLKESFFQEALDL-SFADFLRLLSETVYGGELAG----QGLPDVDRAVLRTQAKLVGDLPRLVTGE   75 (319)
T ss_dssp             CHHHHHHHHHHHTTSCCHHHHHHHTTC-CHHHHHHHHHTSGGGGGCCC----SSHHHHHHHHHHHHHHHTTTHHHHCCHH
T ss_pred             CccHHHHHHHHHHcCCCHHHHHHHHcC-CHHHHHHHHHhCCchhhhhc----cChHHHHHHHHHHHHHHHHHHHHHCCch
Confidence            899999999999999999999999999 78999999999999999976    3689999999999999999999999999


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHhhcCCCChHHHHhhccCCCCccc--hhHHHhhcCHHHHHHHH-hcCCCChhhhhhhcc
Q 024398           93 LSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFDS--IATLAVAQNMRELYRLV-LVDTPLAPYFSECIT  169 (268)
Q Consensus        93 l~~fl~~l~~~~~I~Nv~~llrg~~~~~~~~el~~~~~PlG~f~~--l~~L~~a~~v~el~~~v-L~~Tp~~~~~~~~l~  169 (268)
                      +++|+++++++|||+|||++|||+.+|++.+++   ++|.|.|+.  +..+..+++++++.+.+ ..+|||++++.++..
T Consensus        76 ~k~~~~~~~~~~~i~Nik~llr~~~~g~~~~~l---l~~~g~~~~~~l~~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  152 (319)
T d1v9ma_          76 AREAVRLLLLRNDLHNLQALLRAKATGRPFEEV---LLLPGTLREEVWRQAYEAQDPAGMAQVLAVPGHPLARALRAVLR  152 (319)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCCGGGC---CCCSCSSCHHHHHHHHHSSSHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHh---ccCCCccCHHHHHHHHhCCCHHHHHHHhcccCchHHHHHHHHhh
Confidence            999999999999999999999999999999987   789999996  77888999999999873 258999999988753


Q ss_pred             ccccCCccHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHhhHHHHHHHHHHHHhcCCCCCHHHHhccccCCC-ccC
Q 024398          170 SEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFG-LLY  248 (268)
Q Consensus       170 ~~~~~~~~ie~~~~~Ldk~Y~e~~~~~~~~l~~~~~~im~~~l~~eaD~~ni~iilns~~~~ls~~~r~~l~P~~g-~L~  248 (268)
                          +..|+..+++.|||+||+++++.++   +.+++++.++++++||+.||+|++|+++.++++++  .++| +| .+.
T Consensus       153 ----~~~d~~~ie~~Ld~~y~~~l~~~~~---~~~~~~l~~~~~~~iD~~Ni~~~~R~k~~~~~~~~--~li~-~g~~~~  222 (319)
T d1v9ma_         153 ----ETQDLARVEALLAKRFFEDVAKAAK---GLDQPALRDYLALEVDAENLRTAFKLQGSGLAPDA--FFLK-GGRFVD  222 (319)
T ss_dssp             ----TCCCHHHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHHHHHHTTTSCCCGGG--TCCS-SCSSCC
T ss_pred             ----cCCCHHHHHHHHHHHHHHHHHHHhc---cchHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHH--hcCC-CCCCCc
Confidence                3367889999999999999998754   45678999999999999999999999998888763  2455 66 556


Q ss_pred             HHhHHhhccCCChHHHhhh
Q 024398          249 PYGHEELAVCEDIDQVCFQ  267 (268)
Q Consensus       249 ~~~~~~L~~a~~~e~v~~~  267 (268)
                      .+.++.+++  +.+++...
T Consensus       223 ~~~~~~~~~--~~~~~~~~  239 (319)
T d1v9ma_         223 RVRFARLME--GDYAVLDE  239 (319)
T ss_dssp             HHHHHHHHT--TCGGGGGS
T ss_pred             HHHHHHhhc--CHHHHHHH
Confidence            677777754  44565443

PyMOL of d1v9ma_

>d1v9ma_ f.40.1.1 (A:) V-type ATP synthase subunit C {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure